HHsearch alignment for GI: 254780975 and conserved domain: PRK11815
>PRK11815 tRNA-dihydrouridine synthase A; Provisional.
Probab=96.18 E-value=0.083 Score=31.86 Aligned_cols=129 Identities=16% Similarity=0.267 Sum_probs=86.2
Q ss_pred ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCC---CCCC------H----HHHHHHHHCCCCEEEEEEEE--
Q ss_conf 8170632588999999999996599899997342634584---3417------8----99998641256416856788--
Q gi|254780975|r 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPN---ISFG------A----DVIRSLRSYSDSVFDCHLMI-- 71 (224)
Q Consensus 7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn---~~~~------~----~~i~~i~~~t~~~~dvHLMv-- 71 (224)
T Consensus 67 v~vQl~G~dp~~la~Aa~i~~~~g~d~--IDlN~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a~~~PVTvK~RlG~ 144 (333)
T PRK11815 67 VALQLGGSDPADLAEAAKLAEDWGYDE--INLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGI 144 (333)
T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCE--ECCCCCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 799974799999999999998739885--352389986887327801787079999999999998734885357863167
Q ss_pred E--ECC----HHHHHHCCCCCCEEEEECCCC--------C-------CHHHHHHHHHHCCCEEEEEEECC-CCHHHHHHH
Q ss_conf 5--120----336764047760799970664--------2-------15899986776498259985233-344789988
Q gi|254780975|r 72 S--SID----SHINIIADAGCDIITFHPESS--------P-------HIRRSLRTIHAMGKKTGVAINPE-TPVAILEDV 129 (224)
Q Consensus 72 ~--~P~----~~i~~~~~~g~d~i~~H~E~~--------~-------~~~~~i~~i~~~g~k~Giai~p~-T~~~~i~~~ 129 (224)
T Consensus 145 d~~d~~~~l~~f~~~~~~aG~~~i~vH~R~a~l~Glspk~nR~ippl~~-~~v~~lk~~~p~ipvi~NGdI~s~~~~~~~ 223 (333)
T PRK11815 145 DDQDSYEFLCDFVDTVAEAGCDRFIVHARKAWLKGLSPKENREIPPLDY-DRVYRLKRDFPHLTIEINGGIKTLEEAKEH 223 (333)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCHHHHCCCCCHHH-HHHHHHHHHCCCCEEEECCCCCCHHHHHHH
T ss_conf 7775289999999999975998899960278772678777505873048-999999976678718845996999999999
Q ss_pred HHHCCEEEE
Q ss_conf 620140289
Q gi|254780975|r 130 IDEIDMILI 138 (224)
Q Consensus 130 l~~~D~vli 138 (224)
T Consensus 224 l~~~DGVMi 232 (333)
T PRK11815 224 LQHVDGVMI 232 (333)
T ss_pred HHCCCEEEE
T ss_conf 855996211