HHsearch alignment for GI: 254780975 and conserved domain: TIGR00381
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=93.13 E-value=0.099 Score=31.36 Aligned_cols=134 Identities=19% Similarity=0.287 Sum_probs=78.5
Q ss_pred CCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 98999973426345843417899998641256416856788512033676404-77607999706642158999867764
Q gi|254780975|r 31 AKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIAD-AGCDIITFHPESSPHIRRSLRTIHAM 109 (224)
Q Consensus 31 ~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~-~g~d~i~~H~E~~~~~~~~i~~i~~~ 109 (224)
T Consensus 115 pPvvtfDvFDiP---~----PgLpkpiR~h---f~DV---medP~eWArKcVK~fGAdmvTiHlIsTdPk~------~Dk 175 (401)
T TIGR00381 115 PPVVTFDVFDIP---M----PGLPKPIREH---FEDV---MEDPAEWARKCVKEFGADMVTIHLISTDPKV------KDK 175 (401)
T ss_pred CCEEEEEECCCC---C----CCCCHHHHHH---HHHH---HCCHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCC
T ss_conf 687787513687---5----7876677776---5663---0283358888887627663886443378854------688
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHH----HHHCCCCEEEEECCCCHHHHHH
Q ss_conf 982599852333447899886201402899830677653322013577899865----4313865269815899889999
Q gi|254780975|r 110 GKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKA----LIGKRSISLEVDGGVTSRNIKS 185 (224)
Q Consensus 110 g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~----~~~~~~~~I~vDGGvn~~~i~~ 185 (224)
T Consensus 176 --------sp~EAaK~~EdvLQAVdvP~viG---GSGnpeKDPlVLEkaAEvAEGeR~lLASAnLd--l----Dy~kia~ 238 (401)
T TIGR00381 176 --------SPKEAAKVLEDVLQAVDVPLVIG---GSGNPEKDPLVLEKAAEVAEGERCLLASANLD--L----DYKKIAN 238 (401)
T ss_pred --------CHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCC--C----CHHHHHH
T ss_conf --------72247889998763406775774---78888667578998843113621645413513--4----5789999
Q ss_pred HHHCCCCEEEECHHHH
Q ss_conf 9967998999742663
Q gi|254780975|r 186 LVQAGADLLVVGSSFF 201 (224)
Q Consensus 186 l~~~Gad~~V~Gsaif 201 (224)
T Consensus 239 AA~-ky~H~VLsW~~m 253 (401)
T TIGR00381 239 AAL-KYDHVVLSWAIM 253 (401)
T ss_pred HHH-HCCCEEEEHHHC
T ss_conf 985-349807761112