HHsearch alignment for GI: 254780975 and conserved domain: TIGR00381

>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=93.13  E-value=0.099  Score=31.36  Aligned_cols=134  Identities=19%  Similarity=0.287  Sum_probs=78.5

Q ss_pred             CCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf             98999973426345843417899998641256416856788512033676404-77607999706642158999867764
Q gi|254780975|r   31 AKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIAD-AGCDIITFHPESSPHIRRSLRTIHAM  109 (224)
Q Consensus        31 ~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~-~g~d~i~~H~E~~~~~~~~i~~i~~~  109 (224)
T Consensus       115 pPvvtfDvFDiP---~----PgLpkpiR~h---f~DV---medP~eWArKcVK~fGAdmvTiHlIsTdPk~------~Dk  175 (401)
T TIGR00381       115 PPVVTFDVFDIP---M----PGLPKPIREH---FEDV---MEDPAEWARKCVKEFGADMVTIHLISTDPKV------KDK  175 (401)
T ss_pred             CCEEEEEECCCC---C----CCCCHHHHHH---HHHH---HCCHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCC
T ss_conf             687787513687---5----7876677776---5663---0283358888887627663886443378854------688


Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHH----HHHCCCCEEEEECCCCHHHHHH
Q ss_conf             982599852333447899886201402899830677653322013577899865----4313865269815899889999
Q gi|254780975|r  110 GKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKA----LIGKRSISLEVDGGVTSRNIKS  185 (224)
Q Consensus       110 g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~----~~~~~~~~I~vDGGvn~~~i~~  185 (224)
T Consensus       176 --------sp~EAaK~~EdvLQAVdvP~viG---GSGnpeKDPlVLEkaAEvAEGeR~lLASAnLd--l----Dy~kia~  238 (401)
T TIGR00381       176 --------SPKEAAKVLEDVLQAVDVPLVIG---GSGNPEKDPLVLEKAAEVAEGERCLLASANLD--L----DYKKIAN  238 (401)
T ss_pred             --------CHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCC--C----CHHHHHH
T ss_conf             --------72247889998763406775774---78888667578998843113621645413513--4----5789999


Q ss_pred             HHHCCCCEEEECHHHH
Q ss_conf             9967998999742663
Q gi|254780975|r  186 LVQAGADLLVVGSSFF  201 (224)
Q Consensus       186 l~~~Gad~~V~Gsaif  201 (224)
T Consensus       239 AA~-ky~H~VLsW~~m  253 (401)
T TIGR00381       239 AAL-KYDHVVLSWAIM  253 (401)
T ss_pred             HHH-HCCCEEEEHHHC
T ss_conf             985-349807761112