HHsearch alignment for GI: 254780975 and conserved domain: TIGR03471
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=96.28 E-value=0.072 Score=32.26 Aligned_cols=130 Identities=17% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHHC--CCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf 25889999999999965--9989999734263458434178999986412564168567885120336764047760799
Q gi|254780975|r 13 AADFSRLGEEISNITKA--GAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIIT 90 (224)
Q Consensus 13 ~~d~~~l~~~i~~l~~~--~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~ 90 (224)
T Consensus 226 ~RSpe~VvdEIe~l~~~y~gv~~~--~f~DD~Ft~~~~r~~eic~~i~~l-~i~W~~~~Rv~~d~E~l~~mk~AGc~~v~ 302 (472)
T TIGR03471 226 TRSAESVIEEVKYALENFPEVREF--FFDDDTFTDDKPRAEEIARKLGPL-GVTWSCNARANVDYETLKVMKENGLRLLL 302 (472)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHC-CCEEEEEEECCCCHHHHHHHHHHCCEEEE
T ss_conf 159999999999999866897589--994776678999999999999876-98278763034899999999983984899
Q ss_pred EECCCCC--------------CHHHHHHHHHHCCCEEEEEEE---CCCCHHHHHHHHH-----HCCEEEEEEEE--CCC
Q ss_conf 9706642--------------158999867764982599852---3334478998862-----01402899830--677
Q gi|254780975|r 91 FHPESSP--------------HIRRSLRTIHAMGKKTGVAIN---PETPVAILEDVID-----EIDMILIMTVN--PGF 145 (224)
Q Consensus 91 ~H~E~~~--------------~~~~~i~~i~~~g~k~Giai~---p~T~~~~i~~~l~-----~~D~vliM~V~--PG~ 145 (224)
T Consensus 303 ~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~GI~v~~~FIiG~PgET~Eti~~Ti~fa~~l~~d~~~~si~tPyPGT 381 (472)
T TIGR03471 303 VGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGT 381 (472)
T ss_pred EECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 8037589999998538998999999999887579879999987799998899999999999759890899872588996