HHsearch alignment for GI: 254780975 and conserved domain: TIGR03471

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=96.28  E-value=0.072  Score=32.26  Aligned_cols=130  Identities=17%  Similarity=0.244  Sum_probs=85.7

Q ss_pred             CCCHHHHHHHHHHHHHC--CCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf             25889999999999965--9989999734263458434178999986412564168567885120336764047760799
Q gi|254780975|r   13 AADFSRLGEEISNITKA--GAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIIT   90 (224)
Q Consensus        13 ~~d~~~l~~~i~~l~~~--~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~   90 (224)
T Consensus       226 ~RSpe~VvdEIe~l~~~y~gv~~~--~f~DD~Ft~~~~r~~eic~~i~~l-~i~W~~~~Rv~~d~E~l~~mk~AGc~~v~  302 (472)
T TIGR03471       226 TRSAESVIEEVKYALENFPEVREF--FFDDDTFTDDKPRAEEIARKLGPL-GVTWSCNARANVDYETLKVMKENGLRLLL  302 (472)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHC-CCEEEEEEECCCCHHHHHHHHHHCCEEEE
T ss_conf             159999999999999866897589--994776678999999999999876-98278763034899999999983984899


Q ss_pred             EECCCCC--------------CHHHHHHHHHHCCCEEEEEEE---CCCCHHHHHHHHH-----HCCEEEEEEEE--CCC
Q ss_conf             9706642--------------158999867764982599852---3334478998862-----01402899830--677
Q gi|254780975|r   91 FHPESSP--------------HIRRSLRTIHAMGKKTGVAIN---PETPVAILEDVID-----EIDMILIMTVN--PGF  145 (224)
Q Consensus        91 ~H~E~~~--------------~~~~~i~~i~~~g~k~Giai~---p~T~~~~i~~~l~-----~~D~vliM~V~--PG~  145 (224)
T Consensus       303 ~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~GI~v~~~FIiG~PgET~Eti~~Ti~fa~~l~~d~~~~si~tPyPGT  381 (472)
T TIGR03471       303 VGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGT  381 (472)
T ss_pred             EECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf             8037589999998538998999999999887579879999987799998899999999999759890899872588996