HHsearch alignment for GI: 254780975 and conserved domain: cd00003
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=97.24 E-value=0.02 Score=35.80 Aligned_cols=194 Identities=15% Similarity=0.265 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCEECCCC-CCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECC
Q ss_conf 89999999999965998999973426345843-41789999864125641685678851203367640477607999706
Q gi|254780975|r 16 FSRLGEEISNITKAGAKQIHFDVMDGCFVPNI-SFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPE 94 (224)
Q Consensus 16 ~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~-~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E 94 (224)
T Consensus 20 ~Pd~~~~a~~~~~~GadgITvHlR-----~DrRHI~~~Dv~~l~~~~~~~lNlE--~a~~~emi~ia~~~kP~~vtLVPe 92 (234)
T cd00003 20 YPDPVEAALLAEKAGADGITVHLR-----EDRRHIQDRDVRLLRELVRTELNLE--MAPTEEMLEIALEVKPHQVTLVPE 92 (234)
T ss_pred CCCHHHHHHHHHHCCCCEEEECCC-----CCCCCCCCHHHHHHHHHCCCCEEEC--CCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 999999999999839985895248-----8766675457999998658554661--279389999999849987898788
Q ss_pred CC---------------CCHHHHHHHHHHCCCEEEEEEECCCC-HHHHHHHHHHCCEEEEEEEE-CCCCCCCCCCHHHHH
Q ss_conf 64---------------21589998677649825998523334-47899886201402899830-677653322013577
Q gi|254780975|r 95 SS---------------PHIRRSLRTIHAMGKKTGVAINPETP-VAILEDVIDEIDMILIMTVN-PGFGGQQLIESTIPK 157 (224)
Q Consensus 95 ~~---------------~~~~~~i~~i~~~g~k~Giai~p~T~-~~~i~~~l~~~D~vliM~V~-PG~~Gq~f~~~~l~k 157 (224)
T Consensus 93 ~r~elTTegGld~~~~~~~L~~~i~~lk~~~IrvSLFIDPd~~qi~~a~~~--Gad~VElhTG~Ya~a~~~~~~~~el~~ 170 (234)
T cd00003 93 KREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEV--GADRVELHTGPYANAYDKAEREAELER 170 (234)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH--CCCEEEEECHHHHHHCCCHHHHHHHHH
T ss_conf 878641788926654788999999999865982799727987899999984--939999824787863481039999999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHC-CCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 89986543138652698158998899999967-99899974266378998999999999999
Q gi|254780975|r 158 IRQAKALIGKRSISLEVDGGVTSRNIKSLVQA-GADLLVVGSSFFNQKGEISYAKRLNDLKK 218 (224)
Q Consensus 158 I~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~-Gad~~V~Gsaif~~~d~~~~~~~l~~l~~ 218 (224)
T Consensus 171 i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~ip~i~EvnIGHaiI~esl~~Gl~~aV~~~~~ 232 (234)
T cd00003 171 IAKAAKLARELGLGVNAGHGLNYENVKPIAKIPGIAELNIGHAIISRALFVGLEEAVREMKD 232 (234)
T ss_pred HHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999985987854789887679998558997288557999999999749999999997