HHsearch alignment for GI: 254780975 and conserved domain: cd00564

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.78  E-value=6.6e-07  Score=64.46  Aligned_cols=190  Identities=19%  Similarity=0.155  Sum_probs=119.7

Q ss_pred             ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf             81706325889999999999965998999973426345843417899998641256416856788512033676404776
Q gi|254780975|r    7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC   86 (224)
Q Consensus         7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~   86 (224)
T Consensus         4 IT~~~~~--~~~~~~~l~~~l~~gv~~iqlR~k~~~~~~----~~~~a~~~~~~~~-~~~~~liInd~~~lA---~~~~~   73 (196)
T cd00564           4 ITDRRLD--GEDLLEVVEAALKGGVTLVQLREKDLSARE----LLELARALRELCR-KYGVPLIINDRVDLA---LAVGA   73 (196)
T ss_pred             ECCCCCC--CCHHHHHHHHHHHCCCCEEEECCCCCCHHH----HHHHHHHHHHHHH-HHCCEEEECCHHHHH---HHHCC
T ss_conf             8898646--514999999999859999998679989999----9999999999999-809979978869999---97399


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCC-CCHHHHHHHHHHHH
Q ss_conf             079997066421589998677649825998523334478998862-0140289983067765332-20135778998654
Q gi|254780975|r   87 DIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQL-IESTIPKIRQAKAL  164 (224)
Q Consensus        87 d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f-~~~~l~kI~~l~~~  164 (224)
T Consensus        74 d--GvHl~~~d~~~~~~r~~~~~~~iiG~S~h--~-~~e~~~a~~~g~DYi~~gpvf~T~tK~~~~~~~g~~~l~~~~~~  148 (196)
T cd00564          74 D--GVHLGQDDLPVAEARALLGPDLIIGVSTH--S-LEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL  148 (196)
T ss_pred             C--EEECCCCCCCHHHHHHHHCCCCEEEECCC--C-HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             8--79558466899999987288975882478--8-99999988709993886465578988887787788999999986


Q ss_pred             HHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf             31386526981589988999999679989997426637899899999999
Q gi|254780975|r  165 IGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLN  214 (224)
Q Consensus       165 ~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~  214 (224)
T Consensus       149 ---~~~Pv~AiGGI~~~ni~~~~~~G~~giAv~s~i~~~~dp~~~~~~l~  195 (196)
T cd00564         149 ---VEIPVVAIGGITPENAAEVLAAGADGVAVISAITGADDPAAAARELL  195 (196)
T ss_pred             ---CCCCEEEECCCCHHHHHHHHHCCCCEEEEHHHHHCCCCHHHHHHHHH
T ss_conf             ---79998998589999999999809999997299777999999999972