HHsearch alignment for GI: 254780975 and conserved domain: cd02809

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.11  E-value=0.77  Score=25.69  Aligned_cols=145  Identities=15%  Similarity=0.201  Sum_probs=89.0

Q ss_pred             HHHHHHCCCCEEEEEEEEEE-CC---HHHHHHCCCCCCEEEEECCCCCCH----HHHHHHHHHCCCEEEEEEECCCCHHH
Q ss_conf             99864125641685678851-20---336764047760799970664215----89998677649825998523334478
Q gi|254780975|r   54 IRSLRSYSDSVFDCHLMISS-ID---SHINIIADAGCDIITFHPESSPHI----RRSLRTIHAMGKKTGVAINPETPVAI  125 (224)
Q Consensus        54 i~~i~~~t~~~~dvHLMv~~-P~---~~i~~~~~~g~d~i~~H~E~~~~~----~~~i~~i~~~g~k~Giai~p~T~~~~  125 (224)
T Consensus       107 lEei~~~~~~~~wfQLY~~~d~~~~~~li~rA~~aG~~al~lTvD~p~~g~R~~w~~i~~l~~~~~~p-~i~KGi~~~~D  185 (299)
T cd02809         107 LEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGP-LILKGILTPED  185 (299)
T ss_pred             HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC-EEEECCCCHHH
T ss_conf             89999744898467764369999999999999985999899970589878879999999999866998-79972788999


Q ss_pred             HHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECH-HHHC
Q ss_conf             9988620-140289983067765332201357789986543138652698158998-899999967998999742-6637
Q gi|254780975|r  126 LEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGS-SFFN  202 (224)
Q Consensus       126 i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gs-aif~  202 (224)
T Consensus       186 A~~a~~~G~dgI~V-S-NHGGRqlD~~p~~i~~L~~i~~~v~-~~~~v~~DgGvR~G~Dv~KAlaLGA~~V~iGRp~l~~  262 (299)
T cd02809         186 ALRAVDAGADGIVV-S-NHGGRQLDGAPATIDALPEIVAAVG-GRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYG  262 (299)
T ss_pred             HHHHHHCCCCEEEE-C-CCCCCCCCCCCCHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf             99999859988997-2-8873336888778999999999854-6728997188475368999997699889877899999