HHsearch alignment for GI: 254780975 and conserved domain: cd02809
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.11 E-value=0.77 Score=25.69 Aligned_cols=145 Identities=15% Similarity=0.201 Sum_probs=89.0
Q ss_pred HHHHHHCCCCEEEEEEEEEE-CC---HHHHHHCCCCCCEEEEECCCCCCH----HHHHHHHHHCCCEEEEEEECCCCHHH
Q ss_conf 99864125641685678851-20---336764047760799970664215----89998677649825998523334478
Q gi|254780975|r 54 IRSLRSYSDSVFDCHLMISS-ID---SHINIIADAGCDIITFHPESSPHI----RRSLRTIHAMGKKTGVAINPETPVAI 125 (224)
Q Consensus 54 i~~i~~~t~~~~dvHLMv~~-P~---~~i~~~~~~g~d~i~~H~E~~~~~----~~~i~~i~~~g~k~Giai~p~T~~~~ 125 (224)
T Consensus 107 lEei~~~~~~~~wfQLY~~~d~~~~~~li~rA~~aG~~al~lTvD~p~~g~R~~w~~i~~l~~~~~~p-~i~KGi~~~~D 185 (299)
T cd02809 107 LEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGP-LILKGILTPED 185 (299)
T ss_pred HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC-EEEECCCCHHH
T ss_conf 89999744898467764369999999999999985999899970589878879999999999866998-79972788999
Q ss_pred HHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECH-HHHC
Q ss_conf 9988620-140289983067765332201357789986543138652698158998-899999967998999742-6637
Q gi|254780975|r 126 LEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGS-SFFN 202 (224)
Q Consensus 126 i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gs-aif~ 202 (224)
T Consensus 186 A~~a~~~G~dgI~V-S-NHGGRqlD~~p~~i~~L~~i~~~v~-~~~~v~~DgGvR~G~Dv~KAlaLGA~~V~iGRp~l~~ 262 (299)
T cd02809 186 ALRAVDAGADGIVV-S-NHGGRQLDGAPATIDALPEIVAAVG-GRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYG 262 (299)
T ss_pred HHHHHHCCCCEEEE-C-CCCCCCCCCCCCHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 99999859988997-2-8873336888778999999999854-6728997188475368999997699889877899999