HHsearch alignment for GI: 254780975 and conserved domain: cd02812
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=96.15 E-value=0.018 Score=36.18 Aligned_cols=165 Identities=17% Similarity=0.239 Sum_probs=91.4
Q ss_pred HHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCC-CCHHHH
Q ss_conf 9999659989999734263458434178999986412564168567885120336764047760799970664-215899
Q gi|254780975|r 24 SNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESS-PHIRRS 102 (224)
Q Consensus 24 ~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~-~~~~~~ 102 (224)
T Consensus 19 ~~~~~sgtDai~VGGS~~~---~~~~-~~~v~~ik~~~~-~~PvilfPg~~~~i-----s~~aDa~lf~sllNs~n~~~l 88 (219)
T cd02812 19 KLAEESGTDAIMVGGSDGV---SSTL-DNVVRLIKRIRR-PVPVILFPSNPEAV-----SPGADAYLFPSVLNSGDPYWI 88 (219)
T ss_pred HHHHHHCCCEEEECCCCCC---HHHH-HHHHHHHHHHCC-CCCEEEECCCHHHC-----CCCCCEEEEEEEECCCCCHHH
T ss_conf 9999769999999375574---4779-999999997378-99989957986656-----867786886875338992367
Q ss_pred H-------HHHHH----------------CCCEEEEEE--ECCCCHHHHHHHHHHCCEEE--EEEEECCCCCCCCCCHHH
Q ss_conf 9-------86776----------------498259985--23334478998862014028--998306776533220135
Q gi|254780975|r 103 L-------RTIHA----------------MGKKTGVAI--NPETPVAILEDVIDEIDMIL--IMTVNPGFGGQQLIESTI 155 (224)
Q Consensus 103 i-------~~i~~----------------~g~k~Giai--~p~T~~~~i~~~l~~~D~vl--iM~V~PG~~Gq~f~~~~l 155 (224)
T Consensus 89 ig~~~~aa~~~~~~~~~~e~ip~gYiv~~~g~~v~~v~~a~~~~~~~~~~ayAlaae~lg~~~iYLE--gSGa~---v~~ 163 (219)
T cd02812 89 IGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAEYLGMPIVYLE--YSGAY---GPP 163 (219)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE--CCCCC---CCH
T ss_conf 7889999998743167632200578998799814888246479998999999999998299389995--68997---999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 778998654313865269815899-88999999679989997426637899
Q gi|254780975|r 156 PKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 156 ~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
T Consensus 164 e~V~~vk~~l~--~~~LivGGGIrs~e~a~~~~~AgAD~IVvGn~iee~~~ 212 (219)
T cd02812 164 EVVRAVKKVLG--DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPN 212 (219)
T ss_pred HHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHCCCCEEEECCCEEECHH
T ss_conf 99999998467--97099928979999999999869999998872240689