HHsearch alignment for GI: 254780975 and conserved domain: cd04731

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.85  E-value=3e-06  Score=60.26  Aligned_cols=185  Identities=16%  Similarity=0.150  Sum_probs=123.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEE
Q ss_conf             25889999999999965998999973426345843417899998641256416856788512033676404776079997
Q gi|254780975|r   13 AADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFH   92 (224)
Q Consensus        13 ~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H   92 (224)
T Consensus        26 ~gdP~~~---a~~~~~~gadelhivDld~a~-~g~~~n~~~i~~i~~~~~~pi~vGGGIrs-~~~~~~~l~~GadkVvig  100 (243)
T cd04731          26 AGDPVEL---AKRYNEQGADELVFLDITASS-EGRETMLDVVERVAEEVFIPLTVGGGIRS-LEDARRLLRAGADKVSIN  100 (243)
T ss_pred             CCCHHHH---HHHHHHCCCCEEEEECCCCCC-CCCCCHHHHHHHHHHHCCCCEEEEEEEEE-HHHHHHHHHCCCCEEEEC
T ss_conf             8899999---999998699999997067320-37700799999999867986899850664-799999997799789989


Q ss_pred             CCCCCCHHHHHHHHHHCCCE-EEEEEECC--------------------CCHHHHHHHHHH-CCEEEEEEEECCCCCCCC
Q ss_conf             06642158999867764982-59985233--------------------344789988620-140289983067765332
Q gi|254780975|r   93 PESSPHIRRSLRTIHAMGKK-TGVAINPE--------------------TPVAILEDVIDE-IDMILIMTVNPGFGGQQL  150 (224)
Q Consensus        93 ~E~~~~~~~~i~~i~~~g~k-~Giai~p~--------------------T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f  150 (224)
T Consensus       101 s~~~~n~~~~~~~~~~~Gsq~Iv~siD~k~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~G~geil~tdI~~DGt~~G~  180 (243)
T cd04731         101 SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY  180 (243)
T ss_pred             CCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf             84423771435788756993099999976537896289846984412678999999998469878999872576856657


Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHH-HHHCCCCEEEECHHHHCCCCHHH
Q ss_conf             2013577899865431386526981589-9889999-99679989997426637899899
Q gi|254780975|r  151 IESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKS-LVQAGADLLVVGSSFFNQKGEIS  208 (224)
Q Consensus       151 ~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~-l~~~Gad~~V~Gsaif~~~d~~~  208 (224)
T Consensus       181 d~~l~~~i~~------~~~~piI~sGGi~~~~di~~~l~~~~~~gv~~g~~~~~~~~~l~  234 (243)
T cd04731         181 DLELIRAVSS------AVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIA  234 (243)
T ss_pred             CHHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCCHH
T ss_conf             9999999998------68999999889999999999998789829988227676998999