HHsearch alignment for GI: 254780975 and conserved domain: cd06822
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=93.07 E-value=0.78 Score=25.66 Aligned_cols=152 Identities=16% Similarity=0.272 Sum_probs=80.0
Q ss_pred CCHHHHHHHH-HCCCCE--EEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHH-HHHCCC----EEEEEEEC-
Q ss_conf 1789999864-125641--68567885120336764047760799970664215899986-776498----25998523-
Q gi|254780975|r 49 FGADVIRSLR-SYSDSV--FDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRT-IHAMGK----KTGVAINP- 119 (224)
Q Consensus 49 ~~~~~i~~i~-~~t~~~--~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~-i~~~g~----k~Giai~p- 119 (224)
T Consensus 49 fGENrvQE~~~K~~~l~~~i~WHfIG~LQsNKvk~i~~~-~~~~~IhSvDs~kla~~l~~~~~~~~~~~~l~vliQVNi~ 127 (227)
T cd06822 49 FGENYVQELIEKAPDLPIDIKWHFIGHLQSNKVKKLLKV-PNLYMVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTS 127 (227)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC-CCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 288609999999984532545999645324348999706-7744664157499999999999973688870699997027
Q ss_pred ------CCCHHHHHHHH-------HHCCEEEEEEEEC-CCCCCCCCCHHHHHHHHHHHHHH-CCCCE---EEEECCCCHH
Q ss_conf ------33447899886-------2014028998306-77653322013577899865431-38652---6981589988
Q gi|254780975|r 120 ------ETPVAILEDVI-------DEIDMILIMTVNP-GFGGQQLIESTIPKIRQAKALIG-KRSIS---LEVDGGVTSR 181 (224)
Q Consensus 120 ------~T~~~~i~~~l-------~~~D~vliM~V~P-G~~Gq~f~~~~l~kI~~l~~~~~-~~~~~---I~vDGGvn~~ 181 (224)
T Consensus 128 ~E~~K~G~~~~e~~~~~~~i~~~~~~l~i~GLMti~p~~~~~~~~~~~~F~~l~~l~~~l~~~~~~~~~~~eLSMGMS-~ 206 (227)
T cd06822 128 GEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGMS-A 206 (227)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHH-H
T ss_conf 864568989999999999999868997688999869899880022139999999999999997499999798868536-5
Q ss_pred HHHHHHHCCCCEEEECHHHHC
Q ss_conf 999999679989997426637
Q gi|254780975|r 182 NIKSLVQAGADLLVVGSSFFN 202 (224)
Q Consensus 182 ~i~~l~~~Gad~~V~Gsaif~ 202 (224)
T Consensus 207 Dye~AIe~GsT~VRIGs~IFG 227 (227)
T cd06822 207 DFEHAIEMGSTNVRVGSAIFG 227 (227)
T ss_pred HHHHHHHCCCCEEECCCHHCC
T ss_conf 799999879997983713109