HHsearch alignment for GI: 254780975 and conserved domain: cd06824
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=93.95 E-value=0.13 Score=30.54 Aligned_cols=136 Identities=13% Similarity=0.227 Sum_probs=74.1
Q ss_pred EEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH-HCCC--EEEEEEECC-------CCHHHHHHHHH--
Q ss_conf 16856788512033676404776079997066421589998677-6498--259985233-------34478998862--
Q gi|254780975|r 64 VFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIH-AMGK--KTGVAINPE-------TPVAILEDVID-- 131 (224)
Q Consensus 64 ~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~-~~g~--k~Giai~p~-------T~~~~i~~~l~-- 131 (224)
T Consensus 72 ~i~wHfIG~LQsNKvk~i~~~-~~~--IhSvDs~kla~~l~~~~~~~~~~~~vliQVN~s~E~~K~G~~~~e~~~~~~~i 148 (224)
T cd06824 72 DIEWHFIGPIQSNKTKLIAEN-FDW--VHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISGEDSKSGVAPEDAAELAEAI 148 (224)
T ss_pred CCEEEEECCCCHHHHHHHHHH-HHH--HHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 955999775520167999985-218--97645099999999999972998628999853785002698999999999999
Q ss_pred ----HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf ----0140289983067765332201357789986543138652-69815899889999996799899974266378
Q gi|254780975|r 132 ----EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS-LEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQ 203 (224)
Q Consensus 132 ----~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~-I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~ 203 (224)
T Consensus 149 ~~~~~l~i~GLMti~p~~~d~~~~r~~F~~l~~l~~~l~~~~~~~~~LSMGMS-~Dye~AI~~GsT~VRIGsaIFGa 224 (224)
T cd06824 149 SQLPNLRLRGLMAIPAPTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMGMS-GDLEAAIAAGSTMVRIGTAIFGA 224 (224)
T ss_pred HHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCH-HHHHHHHHCCCCEEEECCHHHCC
T ss_conf 95699842667765799988578999999999999999851799895777054-54999998799979818364196