Query         gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate 3-epimerase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 224
No_of_seqs    118 out of 2458
Neff          6.5 
Searched_HMMs 39220
Date          Mon May 30 02:40:08 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780975.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01163 rpe ribulose-phospha 100.0       0       0  561.8  20.1  209    6-214     1-216 (216)
  2 PRK08745 ribulose-phosphate 3- 100.0       0       0  494.4  25.1  220    1-224     1-223 (223)
  3 PRK05581 ribulose-phosphate 3- 100.0       0       0  492.8  24.4  214    2-215     1-216 (220)
  4 COG0036 Rpe Pentose-5-phosphat 100.0       0       0  493.0  22.4  215    3-217     2-217 (220)
  5 PRK08005 ribulose-phosphate 3- 100.0       0       0  489.7  22.4  210    5-216     1-210 (210)
  6 PRK08091 ribulose-phosphate 3- 100.0       0       0  490.2  21.1  216    1-218     9-235 (235)
  7 PRK08883 ribulose-phosphate 3- 100.0       0       0  484.5  24.4  208    7-214     2-212 (220)
  8 PRK09722 allulose-6-phosphate  100.0       0       0  481.5  23.1  215    5-220     1-220 (227)
  9 PTZ00170 D-ribulose-5-phosphat 100.0       0       0  480.2  23.6  211    3-216     1-217 (224)
 10 cd00429 RPE Ribulose-5-phospha 100.0       0       0  477.7  22.0  208    6-213     1-210 (211)
 11 pfam00834 Ribul_P_3_epim Ribul 100.0       0       0  479.1  20.9  199    6-204     1-201 (201)
 12 KOG3111 consensus              100.0       0       0  438.5  22.0  217    1-219     1-219 (224)
 13 TIGR03128 RuMP_HxlA 3-hexulose  99.7   1E-14 2.7E-19  114.3  17.5  196   12-216     4-205 (206)
 14 PRK07028 bifunctional hexulose  99.7 5.7E-14 1.4E-18  109.6  19.2  197   12-220     8-213 (429)
 15 PRK13306 ulaD 3-keto-L-gulonat  99.6 8.4E-14 2.1E-18  108.5  17.2  197   12-217     8-211 (216)
 16 PRK13305 sgbH 3-keto-L-gulonat  99.6 3.3E-13 8.5E-18  104.7  17.3  197   12-217     8-211 (220)
 17 COG0269 SgbH 3-hexulose-6-phos  99.5 2.7E-12 6.8E-17   98.9  17.3  197   12-217     8-212 (217)
 18 PRK13307 bifunctional formalde  99.5 1.5E-11 3.8E-16   94.1  18.4  192   13-216   181-377 (392)
 19 PRK13813 orotidine 5'-phosphat  99.4 2.4E-12 6.2E-17   99.2   8.6  201    1-216     1-211 (215)
 20 cd04726 KGPDC_HPS 3-Keto-L-gul  99.4 3.5E-11 8.9E-16   91.8  13.6  190   12-213     5-202 (202)
 21 PRK13127 consensus              99.0 1.5E-07 3.9E-12   68.5  19.3  206    7-218    13-252 (262)
 22 CHL00200 trpA tryptophan synth  99.0 1.8E-07 4.6E-12   68.0  18.7  190    7-202    17-236 (263)
 23 PRK13122 consensus              99.0 1.6E-07 4.1E-12   68.4  18.1  208    1-219     1-239 (242)
 24 PRK13111 trpA tryptophan synth  99.0 7.1E-07 1.8E-11   64.3  21.1  203    7-216    11-246 (256)
 25 cd04722 TIM_phosphate_binding   99.0 4.1E-08   1E-12   72.2  14.7  176   20-198    15-200 (200)
 26 PRK00043 thiE thiamine-phospha  99.0   2E-07   5E-12   67.8  17.1  196    7-219    12-208 (210)
 27 PRK03220 consensus              99.0   3E-07 7.7E-12   66.6  18.0  199    1-207     1-242 (257)
 28 PRK13129 consensus              99.0 3.3E-07 8.4E-12   66.4  18.1  190    7-202    21-240 (267)
 29 cd04724 Tryptophan_synthase_al  98.9 9.8E-07 2.5E-11   63.4  19.6  198   15-219    12-240 (242)
 30 PRK13117 consensus              98.9 1.7E-06 4.3E-11   61.8  20.1  191    7-202    19-239 (268)
 31 PRK02621 consensus              98.9 5.6E-07 1.4E-11   64.9  17.4  202    1-211     1-242 (254)
 32 PRK00748 1-(5-phosphoribosyl)-  98.9 1.7E-06 4.2E-11   61.9  18.9  186   11-207    26-231 (241)
 33 pfam00977 His_biosynth Histidi  98.9 1.3E-06 3.4E-11   62.5  18.3  184   10-204    25-227 (229)
 34 PRK13131 consensus              98.9 1.9E-06 4.9E-11   61.5  19.0  208    5-218    11-253 (257)
 35 pfam00290 Trp_syntA Tryptophan  98.8 2.6E-06 6.7E-11   60.6  19.6  203    7-216    11-249 (258)
 36 cd04731 HisF The cyclase subun  98.8   3E-06 7.6E-11   60.3  19.9  185   13-208    26-234 (243)
 37 PRK13118 consensus              98.8 1.4E-06 3.5E-11   62.4  17.7  191    7-202    19-238 (269)
 38 PRK13125 trpA tryptophan synth  98.8 1.7E-06 4.4E-11   61.8  17.8  211    1-219     2-242 (247)
 39 PRK13585 1-(5-phosphoribosyl)-  98.8 2.9E-06 7.4E-11   60.4  18.9  180   15-205    32-229 (240)
 40 PRK13136 consensus              98.8 5.3E-07 1.4E-11   65.0  15.1  191    7-203    14-232 (253)
 41 PRK02145 consensus              98.8 1.9E-06 4.7E-11   61.6  17.7  204    1-213     2-248 (257)
 42 PRK01659 consensus              98.8 2.8E-06 7.2E-11   60.4  18.4  204    1-213     1-244 (252)
 43 cd04723 HisA_HisF Phosphoribos  98.8 2.5E-06 6.5E-11   60.7  18.1  182   10-204    31-225 (233)
 44 PRK13139 consensus              98.8 2.8E-06 7.2E-11   60.4  18.0  193    4-203    15-237 (254)
 45 cd00564 TMP_TenI Thiamine mono  98.8 6.6E-07 1.7E-11   64.5  14.7  190    7-214     4-195 (196)
 46 PRK13135 consensus              98.8 2.4E-06 6.1E-11   60.9  17.4  191    7-202    19-237 (267)
 47 cd04732 HisA HisA.  Phosphorib  98.8 2.7E-06 6.9E-11   60.5  17.6  183   11-204    26-226 (234)
 48 PRK07695 transcriptional regul  98.8 3.9E-06   1E-10   59.5  18.4  191    7-218     7-198 (202)
 49 PRK13119 consensus              98.8 6.4E-06 1.6E-10   58.1  19.1  189    7-202    17-236 (261)
 50 PRK13113 consensus              98.8   1E-05 2.6E-10   56.8  20.0  210    7-222    19-262 (263)
 51 PRK13597 imidazole glycerol ph  98.7 8.1E-06 2.1E-10   57.5  19.2  187   19-213    33-241 (252)
 52 PRK04281 consensus              98.7 1.1E-05 2.8E-10   56.7  19.8  188   19-214    32-246 (254)
 53 PRK13140 consensus              98.7 5.3E-06 1.4E-10   58.7  18.1  203    7-217    16-256 (257)
 54 PRK02747 consensus              98.7 6.7E-06 1.7E-10   58.0  18.6  204    1-213     1-247 (257)
 55 PRK13134 consensus              98.7 4.9E-06 1.3E-10   58.9  17.8  201    7-214    21-255 (257)
 56 COG0352 ThiE Thiamine monophos  98.7 2.3E-06 5.8E-11   61.0  15.8  183   20-218    24-207 (211)
 57 PRK03512 thiamine-phosphate py  98.7 6.3E-06 1.6E-10   58.2  18.0  182   21-218    23-207 (211)
 58 PRK13124 consensus              98.7 1.2E-05 3.1E-10   56.3  18.9  202    7-216    11-246 (257)
 59 PRK13116 consensus              98.7   8E-06   2E-10   57.5  17.2  192    7-202    19-240 (278)
 60 PRK02615 thiamine-phosphate py  98.6 8.5E-06 2.2E-10   57.4  16.9  188   17-219   155-342 (345)
 61 PRK13587 1-(5-phosphoribosyl)-  98.6   1E-05 2.6E-10   56.9  17.2  176   21-204    35-228 (234)
 62 PRK13121 consensus              98.6 1.6E-05 4.2E-10   55.5  17.8  191    7-202    19-238 (265)
 63 TIGR03572 WbuZ glycosyl amidat  98.6 1.4E-05 3.6E-10   56.0  17.0  176   14-200    30-230 (232)
 64 PRK02083 imidazole glycerol ph  98.6 3.5E-05 8.8E-10   53.5  19.0  186   19-213    32-244 (253)
 65 PRK13114 consensus              98.6 5.1E-05 1.3E-09   52.4  19.7  191    7-202    15-234 (266)
 66 PRK13112 consensus              98.6 1.3E-05 3.2E-10   56.2  16.5  191    7-202    20-239 (279)
 67 PRK13586 1-(5-phosphoribosyl)-  98.6 1.6E-05 4.1E-10   55.6  16.7  178   14-204    29-224 (231)
 68 COG0159 TrpA Tryptophan syntha  98.6 3.8E-05 9.8E-10   53.2  18.5  209    6-220    18-259 (265)
 69 PRK05211 consensus              98.5 2.7E-05 6.9E-10   54.1  17.3  187   14-211    21-236 (248)
 70 PRK00830 consensus              98.5 5.2E-05 1.3E-09   52.3  18.6  188   17-212    34-263 (273)
 71 PRK01033 imidazole glycerol ph  98.5 1.7E-05 4.2E-10   55.5  15.9  180   18-205    31-235 (253)
 72 PRK13138 consensus              98.5 8.6E-05 2.2E-09   50.9  19.2  188    7-201    15-235 (264)
 73 cd04730 NPD_like 2-Nitropropan  98.5 9.6E-06 2.5E-10   57.0  14.2  145   52-205    43-193 (236)
 74 PRK13115 consensus              98.5 4.8E-05 1.2E-09   52.6  17.3  206    6-219    25-263 (269)
 75 PRK13133 consensus              98.5 5.4E-05 1.4E-09   52.2  17.6  206    7-219    17-265 (267)
 76 PRK13123 consensus              98.5 7.1E-05 1.8E-09   51.5  18.2  206    7-220    17-254 (256)
 77 COG0106 HisA Phosphoribosylfor  98.5 0.00016   4E-09   49.2  19.6  180   14-205    31-229 (241)
 78 PRK13120 consensus              98.4 5.3E-05 1.4E-09   52.3  16.4  189    7-202    23-242 (285)
 79 PRK13126 consensus              98.4 2.2E-05 5.5E-10   54.7  13.9  206    7-219     8-232 (237)
 80 PRK01222 N-(5'-phosphoribosyl)  98.4 0.00014 3.6E-09   49.5  18.0  188   17-222    11-211 (212)
 81 PRK12290 thiE thiamine-phospha  98.4 3.5E-05 8.9E-10   53.4  14.8  181   22-216   224-413 (439)
 82 pfam00215 OMPdecase Orotidine   98.4 1.1E-06 2.8E-11   63.1   7.0  199   11-213     4-218 (218)
 83 PRK06512 thiamine-phosphate py  98.4 0.00011 2.9E-09   50.2  17.3  194    7-218    18-213 (221)
 84 PRK00230 orotidine 5'-phosphat  98.4 5.1E-06 1.3E-10   58.8  10.2  199    1-215     1-226 (231)
 85 PRK13132 consensus              98.4 0.00019 4.7E-09   48.8  17.7  200    7-216    13-245 (246)
 86 PRK13137 consensus              98.3 0.00014 3.7E-09   49.5  16.0  200    7-214    27-261 (266)
 87 PRK01130 N-acetylmannosamine-6  98.3 0.00012 3.1E-09   50.0  15.2  178   17-217    23-220 (222)
 88 pfam00697 PRAI N-(5'phosphorib  98.3  0.0002   5E-09   48.6  16.1  166   21-204    10-181 (195)
 89 cd04725 OMP_decarboxylase_like  98.3 4.5E-06 1.2E-10   59.1   7.7  190   12-213     3-216 (216)
 90 pfam04131 NanE Putative N-acet  98.2 0.00026 6.7E-09   47.8  15.9  157   50-218    20-191 (192)
 91 PRK07565 dihydroorotate dehydr  98.2 0.00018 4.6E-09   48.9  14.8  149   54-205    93-277 (333)
 92 cd00405 PRAI Phosphoribosylant  98.2 0.00027   7E-09   47.7  15.6  170   21-204    10-188 (203)
 93 PRK13958 N-(5'-phosphoribosyl)  98.2 0.00085 2.2E-08   44.6  17.6  171   21-208    12-195 (207)
 94 PRK07455 keto-hydroxyglutarate  98.1 0.00021 5.4E-09   48.4  14.2  173    6-205    14-189 (210)
 95 cd04729 NanE N-acetylmannosami  98.1 0.00019 4.7E-09   48.8  13.5  166   17-201    27-210 (219)
 96 PRK04128 1-(5-phosphoribosyl)-  98.1   0.001 2.7E-08   44.0  17.0  175   14-207    30-221 (228)
 97 PRK09427 bifunctional indole-3  98.1 0.00048 1.2E-08   46.1  14.9  163   21-204   269-441 (459)
 98 pfam03060 NPD 2-nitropropane d  98.1 0.00024 6.1E-09   48.1  13.3  124   74-205   103-229 (330)
 99 PRK00278 trpC indole-3-glycero  98.1 0.00028 7.2E-09   47.6  13.6  191    7-214    59-257 (261)
100 COG0135 TrpF Phosphoribosylant  98.1  0.0013 3.3E-08   43.5  17.0  176   17-210    10-199 (208)
101 PRK00748 1-(5-phosphoribosyl)-  98.0 3.5E-05   9E-10   53.4   8.4   37  169-205    73-110 (241)
102 pfam01081 Aldolase KDPG and KH  98.0 0.00024 6.2E-09   48.0  12.6  175    3-205     6-184 (196)
103 pfam02581 TMP-TENI Thiamine mo  98.0  0.0003 7.6E-09   47.5  12.9  176    7-200     4-180 (180)
104 PRK09140 2-dehydro-3-deoxy-6-p  98.0 0.00064 1.6E-08   45.4  14.6  173    6-205    11-187 (206)
105 PRK07259 dihydroorotate dehydr  98.0 0.00015 3.8E-09   49.4  11.2  154   60-218    89-282 (301)
106 PRK09517 multifunctional thiam  98.0 0.00075 1.9E-08   44.9  14.7  188   17-218    18-207 (738)
107 TIGR00007 TIGR00007 phosphorib  98.0  0.0018 4.5E-08   42.6  17.0  176   20-204    31-235 (241)
108 PRK02621 consensus              98.0 5.5E-05 1.4E-09   52.2   8.4   38  169-206    74-112 (254)
109 PRK06857 consensus              98.0 0.00069 1.8E-08   45.2  13.8  171    6-205    13-188 (209)
110 pfam00218 IGPS Indole-3-glycer  98.0 0.00094 2.4E-08   44.3  14.5  192    7-212    57-253 (254)
111 cd00331 IGPS Indole-3-glycerol  98.0  0.0005 1.3E-08   46.1  12.9  192    7-212    20-216 (217)
112 PRK08904 consensus              98.0 0.00087 2.2E-08   44.5  14.2  187    6-221    11-203 (207)
113 TIGR03572 WbuZ glycosyl amidat  97.9 8.4E-05 2.1E-09   51.0   8.7   39  168-206    73-112 (232)
114 PRK06015 keto-hydroxyglutarate  97.9 0.00076 1.9E-08   44.9  13.5  170    6-204    16-190 (212)
115 COG0134 TrpC Indole-3-glycerol  97.9 0.00076 1.9E-08   44.9  13.5  193    6-213    54-252 (254)
116 PRK02747 consensus              97.9 9.2E-05 2.3E-09   50.8   8.7   41  167-207    72-113 (257)
117 PRK13597 imidazole glycerol ph  97.9   1E-04 2.5E-09   50.5   8.7   69  133-207    45-114 (252)
118 PRK01033 imidazole glycerol ph  97.9 0.00012 3.1E-09   50.0   8.9   41  167-207    72-113 (253)
119 COG3010 NanE Putative N-acetyl  97.9  0.0015 3.8E-08   43.0  14.5  175   24-220    40-229 (229)
120 cd04740 DHOD_1B_like Dihydroor  97.9 0.00061 1.5E-08   45.5  12.5  160   53-217    77-278 (296)
121 PRK13585 1-(5-phosphoribosyl)-  97.9 0.00011 2.9E-09   50.2   8.7   36  170-205    76-112 (240)
122 cd01572 QPRTase Quinolinate ph  97.9  0.0002   5E-09   48.6   9.9  104   87-204   153-261 (268)
123 PRK05211 consensus              97.9 0.00018 4.6E-09   48.9   9.4   38  169-206    65-103 (248)
124 cd04739 DHOD_like Dihydroorota  97.9 0.00084 2.1E-08   44.6  12.8  151   53-206    90-276 (325)
125 PRK06552 keto-hydroxyglutarate  97.9   0.002 5.1E-08   42.2  14.7  184    6-220    14-202 (209)
126 PRK04281 consensus              97.9 0.00012 3.1E-09   50.0   8.4   40  167-206    72-112 (254)
127 PRK03220 consensus              97.9 0.00013 3.3E-09   49.8   8.6   81  121-207    32-114 (257)
128 PRK02145 consensus              97.9 0.00013 3.3E-09   49.8   8.6   81  121-207    32-114 (257)
129 PRK02083 imidazole glycerol ph  97.9 0.00015 3.8E-09   49.4   8.8   40   36-91     10-49  (253)
130 pfam00977 His_biosynth Histidi  97.8 0.00015 3.8E-09   49.4   8.7   35  170-204    74-109 (229)
131 TIGR03151 enACPred_II putative  97.8  0.0017 4.3E-08   42.7  14.1  142   52-205    52-198 (307)
132 TIGR00693 thiE thiamine-phosph  97.8  0.0032 8.3E-08   40.9  15.5  199    8-213     6-210 (210)
133 COG0284 PyrF Orotidine-5'-phos  97.8 0.00056 1.4E-08   45.7  11.5  197   11-217    15-234 (240)
134 PRK00830 consensus              97.8 9.9E-05 2.5E-09   50.5   7.6   82  120-207    34-117 (273)
135 PRK05567 inositol-5'-monophosp  97.8  0.0027 6.8E-08   41.4  14.8  125   75-205   230-368 (486)
136 PRK08104 consensus              97.8  0.0035   9E-08   40.6  16.5  172    5-204    15-190 (212)
137 PRK01659 consensus              97.8 0.00012   3E-09   50.1   7.7   38  169-206    74-112 (252)
138 PRK07428 nicotinate-nucleotide  97.8 0.00039   1E-08   46.7  10.2  106   86-204   163-275 (285)
139 cd01568 QPRTase_NadC Quinolina  97.8  0.0004   1E-08   46.7  10.2  105   87-204   152-262 (269)
140 PRK08782 consensus              97.8 0.00078   2E-08   44.8  11.5  171    5-204    17-192 (219)
141 PRK04128 1-(5-phosphoribosyl)-  97.8  0.0002   5E-09   48.6   8.4   76  121-202    31-107 (228)
142 PRK05718 keto-hydroxyglutarate  97.8  0.0018 4.7E-08   42.4  13.3  170    6-204    16-190 (212)
143 PRK07896 nicotinate-nucleotide  97.8 0.00041 1.1E-08   46.6   9.8  117   75-204   148-280 (288)
144 PRK05848 nicotinate-nucleotide  97.7 0.00043 1.1E-08   46.5   9.7  102   92-204   160-263 (272)
145 cd04731 HisF The cyclase subun  97.7 0.00024 6.1E-09   48.1   8.4   41   35-91      6-46  (243)
146 pfam03932 CutC CutC family. Co  97.7  0.0048 1.2E-07   39.8  15.4  167   22-200    12-201 (202)
147 pfam04481 DUF561 Protein of un  97.7   0.005 1.3E-07   39.7  16.2  201    3-220    13-237 (243)
148 pfam01729 QRPTase_C Quinolinat  97.7 0.00048 1.2E-08   46.2   9.3   95   97-204    64-162 (169)
149 cd02810 DHOD_DHPD_FMN Dihydroo  97.7 0.00034 8.6E-09   47.1   8.2  144   60-204    96-280 (289)
150 PRK13803 bifunctional phosphor  97.7   0.006 1.5E-07   39.1  15.1  158   21-189    16-184 (611)
151 PRK05742 nicotinate-nucleotide  97.7 0.00066 1.7E-08   45.3   9.6  104   87-204   161-268 (277)
152 PTZ00314 inosine-5'-monophosph  97.6  0.0063 1.6E-07   39.0  15.2  125   75-205   240-378 (499)
153 PRK05265 pyridoxine 5'-phospha  97.6  0.0062 1.6E-07   39.1  14.4  195   15-218    22-235 (240)
154 cd04723 HisA_HisF Phosphoribos  97.6 0.00032 8.1E-09   47.3   7.7   48   36-90      6-53  (233)
155 PRK08072 nicotinate-nucleotide  97.6 0.00081 2.1E-08   44.7   9.7  104   87-204   159-267 (277)
156 PRK06096 molybdenum transport   97.6 0.00079   2E-08   44.8   9.6  106   86-204   157-270 (284)
157 PRK08385 nicotinate-nucleotide  97.6  0.0013 3.3E-08   43.4  10.1   94   98-204   169-267 (279)
158 cd00381 IMPDH IMPDH: The catal  97.6  0.0031 7.9E-08   41.0  12.0  129   75-205    96-234 (325)
159 pfam03740 PdxJ Pyridoxal phosp  97.6  0.0058 1.5E-07   39.2  13.3  193   17-218    22-235 (239)
160 TIGR01334 modD modD protein; I  97.6 0.00067 1.7E-08   45.2   8.5   99   97-205   173-271 (277)
161 PRK07114 keto-hydroxyglutarate  97.5  0.0024   6E-08   41.7  11.2  172    6-204    17-196 (223)
162 PRK08318 dihydropyrimidine deh  97.5  0.0084 2.1E-07   38.2  13.9  152   53-204    89-289 (413)
163 PRK06978 nicotinate-nucleotide  97.5  0.0012 3.1E-08   43.6   9.5   99   92-204   179-278 (288)
164 cd01573 modD_like ModD; Quinol  97.5  0.0016 4.1E-08   42.8  10.2   91  100-204   171-264 (272)
165 PRK13586 1-(5-phosphoribosyl)-  97.5 0.00095 2.4E-08   44.3   8.9   80  121-207    30-111 (231)
166 PRK06559 nicotinate-nucleotide  97.5  0.0014 3.4E-08   43.3   9.5  116   75-204   146-276 (290)
167 cd00452 KDPG_aldolase KDPG and  97.5   0.007 1.8E-07   38.7  13.1  169    5-201     4-175 (190)
168 TIGR00007 TIGR00007 phosphorib  97.5 0.00033 8.5E-09   47.2   6.3   90  119-216    27-119 (241)
169 PRK06843 inositol-5-monophosph  97.5   0.004   1E-07   40.3  11.8  128   76-205   156-293 (404)
170 cd04732 HisA HisA.  Phosphorib  97.5 0.00091 2.3E-08   44.4   8.4   27  172-198   168-198 (234)
171 PRK13587 1-(5-phosphoribosyl)-  97.5 0.00097 2.5E-08   44.2   8.5   27  172-198   170-200 (234)
172 pfam00478 IMPDH IMP dehydrogen  97.5   0.011 2.8E-07   37.5  14.5  125   75-205   225-363 (467)
173 PRK13957 indole-3-glycerol-pho  97.4   0.014 3.5E-07   36.9  15.8  192    7-213    50-246 (247)
174 PRK04302 triosephosphate isome  97.4   0.008   2E-07   38.3  12.0  161   40-214    38-219 (223)
175 PRK06106 nicotinate-nucleotide  97.4  0.0029 7.3E-08   41.2   9.6  115   76-204   142-271 (281)
176 pfam01884 PcrB PcrB family. Th  97.3   0.015 3.9E-07   36.5  13.8  187   11-214    13-228 (231)
177 PRK09016 quinolinate phosphori  97.3  0.0031 7.8E-08   41.0   9.4  115   75-203   158-286 (296)
178 PRK11572 copper homeostasis pr  97.3   0.018 4.6E-07   36.1  15.1  166   19-197    11-198 (248)
179 PRK07807 inositol-5-monophosph  97.3  0.0087 2.2E-07   38.1  11.4  178   18-205   166-367 (479)
180 PRK13802 bifunctional indole-3  97.3   0.018 4.7E-07   36.1  13.0  196    7-215    59-258 (695)
181 PRK10128 putative aldolase; Pr  97.2    0.02 5.1E-07   35.8  13.1  181   23-217    15-238 (250)
182 cd00003 PNPsynthase Pyridoxine  97.2    0.02 5.1E-07   35.8  15.0  194   16-218    20-232 (234)
183 PRK06256 biotin synthase; Vali  97.2   0.021 5.3E-07   35.7  14.3  188   15-206    91-308 (325)
184 TIGR03239 GarL 2-dehydro-3-deo  97.2   0.022 5.6E-07   35.5  12.8  172   23-200    26-233 (249)
185 PRK06543 nicotinate-nucleotide  97.1   0.006 1.5E-07   39.2   9.1   92   99-204   179-272 (281)
186 COG0106 HisA Phosphoribosylfor  97.1  0.0052 1.3E-07   39.5   8.6   79  121-205    32-112 (241)
187 TIGR01740 pyrF orotidine 5'-ph  97.0  0.0036 9.3E-08   40.5   7.2  194   11-214     2-233 (233)
188 PRK10558 alpha-dehydro-beta-de  97.0   0.034 8.7E-07   34.3  13.1  171   23-199    33-239 (256)
189 PRK05096 guanosine 5'-monophos  96.9   0.021 5.4E-07   35.6  10.6  124   78-205   113-250 (347)
190 pfam01180 DHO_dh Dihydroorotat  96.9   0.015 3.8E-07   36.6   9.8  154   62-218    93-288 (290)
191 PRK08649 inositol-5-monophosph  96.9   0.021 5.5E-07   35.6  10.3  130   73-205   141-292 (368)
192 PRK09853 putative selenate red  96.9   0.044 1.1E-06   33.6  11.8  146   50-205   232-394 (1032)
193 TIGR01302 IMP_dehydrog inosine  96.9   0.034 8.6E-07   34.3  11.2  181   17-205   173-379 (476)
194 PRK00957 methionine synthase;   96.8   0.048 1.2E-06   33.4  11.9   91   19-116   148-245 (307)
195 TIGR03315 Se_ygfK putative sel  96.8   0.045 1.1E-06   33.6  11.5  155   41-205   204-381 (1012)
196 KOG4175 consensus               96.8    0.04   1E-06   33.9  11.0  190    7-201    20-239 (268)
197 PRK09282 pyruvate carboxylase   96.8   0.051 1.3E-06   33.2  11.5  207    1-214     1-251 (580)
198 cd04738 DHOD_2_like Dihydrooro  96.8    0.05 1.3E-06   33.3  11.4  194   12-207    54-320 (327)
199 COG0157 NadC Nicotinate-nucleo  96.7   0.022 5.5E-07   35.6   9.4  117   75-204   137-269 (280)
200 PRK07107 inositol-5-monophosph  96.7   0.059 1.5E-06   32.8  14.2  184   18-205   181-389 (497)
201 PRK12330 oxaloacetate decarbox  96.7   0.045 1.2E-06   33.5  10.8  194    1-199     1-234 (499)
202 cd02940 DHPD_FMN Dihydropyrimi  96.6   0.033 8.3E-07   34.4   9.7  143   61-204    98-289 (299)
203 COG0800 Eda 2-keto-3-deoxy-6-p  96.6   0.074 1.9E-06   32.2  12.3  185    6-221    14-206 (211)
204 COG1646 Predicted phosphate-bi  96.5    0.06 1.5E-06   32.8  10.5  171   17-205    28-228 (240)
205 PRK02506 dihydroorotate dehydr  96.5    0.08   2E-06   32.0  13.4  198    5-207    15-279 (308)
206 cd00311 TIM Triosephosphate is  96.4   0.084 2.1E-06   31.8  10.8  126   78-204    77-235 (242)
207 pfam01207 Dus Dihydrouridine s  96.3   0.097 2.5E-06   31.4  13.4   49  154-205   171-221 (309)
208 TIGR03471 HpnJ hopanoid biosyn  96.3   0.072 1.8E-06   32.3   9.8  130   13-145   226-381 (472)
209 PRK09427 bifunctional indole-3  96.3    0.11 2.7E-06   31.1  15.5  183   15-214    72-256 (459)
210 PRK04169 geranylgeranylglycery  96.2   0.014 3.4E-07   36.9   5.8  164   23-204    24-221 (229)
211 TIGR02129 hisA_euk phosphoribo  96.2  0.0092 2.3E-07   38.0   4.9   71  135-217    61-134 (274)
212 PRK11815 tRNA-dihydrouridine s  96.2   0.083 2.1E-06   31.9   9.6  129    7-138    67-232 (333)
213 cd02812 PcrB_like PcrB_like pr  96.2   0.018 4.5E-07   36.2   6.1  165   24-205    19-212 (219)
214 pfam03437 BtpA BtpA family. Th  96.1    0.13 3.3E-06   30.6  17.2  173   17-201    29-231 (254)
215 TIGR01303 IMP_DH_rel_1 IMP deh  96.1   0.097 2.5E-06   31.4   9.7  129   74-206   227-370 (476)
216 cd04741 DHOD_1A_like Dihydroor  96.0    0.14 3.6E-06   30.4  11.5  152   62-217    91-291 (294)
217 TIGR01108 oadA oxaloacetate de  96.0   0.027 6.8E-07   35.0   6.3  145   50-196    57-225 (616)
218 TIGR01182 eda 2-dehydro-3-deox  95.9    0.16 4.2E-06   30.0  10.6  189    3-222     6-203 (205)
219 TIGR01768 GGGP-family geranylg  95.7   0.037 9.5E-07   34.1   6.1  187   17-210    14-237 (242)
220 PRK12581 oxaloacetate decarbox  95.7    0.11 2.7E-06   31.2   8.4  189    1-197     9-238 (468)
221 cd02801 DUS_like_FMN Dihydrour  95.7     0.2   5E-06   29.5  14.7  175   26-207    19-223 (231)
222 cd01571 NAPRTase_B Nicotinate   95.6   0.036 9.1E-07   34.2   5.8   51  154-204   227-280 (302)
223 cd00516 PRTase_typeII Phosphor  95.6   0.044 1.1E-06   33.6   6.1   72  123-203   194-273 (281)
224 TIGR00262 trpA tryptophan synt  95.6    0.16   4E-06   30.1   8.9  185   15-203    22-233 (262)
225 COG0167 PyrD Dihydroorotate de  95.5    0.22 5.6E-06   29.2  11.7  130   76-206   113-280 (310)
226 cd03311 CIMS_C_terminal_like C  95.5    0.23 5.8E-06   29.1  11.0  144   18-164   156-329 (332)
227 COG3142 CutC Uncharacterized p  95.4    0.24 6.2E-06   28.9  12.6  162   23-198    14-201 (241)
228 PRK05286 dihydroorotate dehydr  95.4     0.1 2.6E-06   31.3   7.3  167   39-207   105-325 (336)
229 TIGR00078 nadC nicotinate-nucl  95.3    0.26 6.6E-06   28.7   9.8  121   66-201   122-265 (276)
230 PRK07188 nicotinate phosphorib  95.2    0.15 3.9E-06   30.1   7.8   95   99-204   222-323 (355)
231 PRK00042 tpiA triosephosphate   94.9    0.34 8.7E-06   27.9  16.2  194    1-204     1-240 (251)
232 PRK05458 guanosine 5'-monophos  94.9    0.35 8.9E-06   27.9  10.9  122   76-205   100-238 (326)
233 PRK05692 hydroxymethylglutaryl  94.8    0.37 9.3E-06   27.7  13.2  165   21-196    30-230 (287)
234 COG0107 HisF Imidazoleglycerol  94.7    0.35 8.8E-06   27.9   8.6  171   21-200    34-232 (256)
235 COG0325 Predicted enzyme with   94.7    0.39   1E-05   27.6  12.7  145   57-205    65-227 (228)
236 cd04727 pdxS PdxS is a subunit  94.6    0.14 3.7E-06   30.3   6.5   61  154-215   182-243 (283)
237 cd00003 PNPsynthase Pyridoxine  94.6    0.41 1.1E-05   27.4  13.0  143   73-221    22-176 (234)
238 COG2070 Dioxygenases related t  94.6    0.41 1.1E-05   27.4  12.0  147   52-205    55-221 (336)
239 PRK04180 pyridoxine biosynthes  94.6    0.13 3.3E-06   30.6   6.1   61  154-215   191-252 (293)
240 cd02931 ER_like_FMN Enoate red  94.5    0.43 1.1E-05   27.3  10.1  124   80-209   158-347 (382)
241 COG0214 SNZ1 Pyridoxine biosyn  94.5    0.16   4E-06   30.1   6.3   92  124-216   164-256 (296)
242 COG5016 Pyruvate/oxaloacetate   94.4   0.094 2.4E-06   31.5   5.2  172   23-197    34-231 (472)
243 COG0149 TpiA Triosephosphate i  94.4    0.46 1.2E-05   27.1  12.8  137   77-214    80-248 (251)
244 PRK10415 tRNA-dihydrouridine s  94.3    0.47 1.2E-05   27.0  13.8  172   26-206    29-233 (321)
245 PRK07094 biotin synthase; Prov  94.3    0.48 1.2E-05   27.0  13.0  180   14-197    70-280 (323)
246 PRK12331 oxaloacetate decarbox  94.2    0.34 8.6E-06   28.0   7.5  191   17-213    26-249 (463)
247 cd06824 PLPDE_III_Yggs_like Py  94.0    0.13 3.4E-06   30.5   5.1  136   64-203    72-224 (224)
248 PRK08195 4-hydroxy-2-ketovaler  93.8    0.59 1.5E-05   26.4  14.5  179   14-196    22-220 (337)
249 TIGR03470 HpnH hopanoid biosyn  93.8    0.59 1.5E-05   26.4  10.9  124   17-148    59-204 (318)
250 pfam00682 HMGL-like HMGL-like.  93.8     0.6 1.5E-05   26.4  13.3  171   16-196    13-212 (237)
251 TIGR00734 hisAF_rel hisA/hisF   93.8     0.6 1.5E-05   26.4  11.7  179   10-203    32-228 (230)
252 COG2108 Uncharacterized conser  93.7    0.61 1.6E-05   26.3  11.8  156   52-220    98-272 (353)
253 smart00812 Alpha_L_fucos Alpha  93.7    0.61 1.6E-05   26.3   9.4  118   71-197    80-233 (384)
254 COG0502 BioB Biotin synthase a  93.7    0.62 1.6E-05   26.3   9.6  196   15-216    85-315 (335)
255 PRK04452 acetyl-CoA decarbonyl  93.6    0.15 3.9E-06   30.1   4.9   27   71-97     74-101 (322)
256 cd02933 OYE_like_FMN Old yello  93.5    0.66 1.7E-05   26.1  11.1  123   80-208   160-325 (338)
257 PRK08662 nicotinate phosphorib  93.5    0.63 1.6E-05   26.2   8.0   50  154-204   243-295 (343)
258 PRK12857 putative aldolase; Re  93.5    0.66 1.7E-05   26.1  11.8  184    9-202    21-237 (284)
259 pfam05690 ThiG Thiazole biosyn  93.5    0.66 1.7E-05   26.1  10.2  187   16-216    18-222 (246)
260 cd04733 OYE_like_2_FMN Old yel  93.5    0.67 1.7E-05   26.1   9.9  124   82-208   159-333 (338)
261 PRK05265 pyridoxine 5'-phospha  93.5    0.67 1.7E-05   26.1  13.0  158   47-221     5-179 (240)
262 TIGR03217 4OH_2_O_val_ald 4-hy  93.5    0.68 1.7E-05   26.0  15.0  177   15-195    22-218 (333)
263 PRK09121 5-methyltetrahydropte  93.2    0.73 1.9E-05   25.8   8.3   90   18-115   157-272 (339)
264 TIGR00381 cdhD CO dehydrogenas  93.1   0.099 2.5E-06   31.4   3.3  134   31-201   115-253 (401)
265 cd02803 OYE_like_FMN_family Ol  93.1    0.76 1.9E-05   25.7   9.7  123   80-208   149-322 (327)
266 cd02809 alpha_hydroxyacid_oxid  93.1    0.77   2E-05   25.7  15.4  145   54-202   107-262 (299)
267 cd06822 PLPDE_III_YBL036c_euk   93.1    0.78   2E-05   25.7  11.1  152   49-202    49-227 (227)
268 PRK08227 aldolase; Validated    93.1    0.78   2E-05   25.6   9.1  142   60-217    99-273 (291)
269 CHL00162 thiG thiamin biosynth  93.0    0.78   2E-05   25.6   9.8  113   97-216   121-237 (267)
270 PRK08999 hypothetical protein;  92.9    0.81 2.1E-05   25.5  12.6  175    6-200   134-311 (312)
271 pfam01645 Glu_synthase Conserv  92.8    0.86 2.2E-05   25.4   8.4  118   84-201   170-307 (367)
272 pfam00121 TIM Triosephosphate   92.7    0.87 2.2E-05   25.3  15.1  184   15-206    12-239 (243)
273 PRK00208 thiG thiazole synthas  92.6     0.9 2.3E-05   25.3   9.6  185   18-216    22-224 (256)
274 KOG3055 consensus               92.5    0.25 6.3E-06   28.8   4.6   31  172-202    85-115 (263)
275 smart00729 Elp3 Elongator prot  92.4    0.78   2E-05   25.7   7.1  105   11-115    27-155 (216)
276 cd04728 ThiG Thiazole synthase  92.3    0.97 2.5E-05   25.0  10.1  185   18-216    21-223 (248)
277 pfam04055 Radical_SAM Radical   92.3    0.98 2.5E-05   25.0   9.8   84   13-98     27-113 (165)
278 TIGR01769 GGGP geranylgeranylg  92.1    0.29 7.3E-06   28.4   4.6  170   16-197    12-212 (212)
279 PRK04326 methionine synthase;   92.0     1.1 2.7E-05   24.8  11.7   90   18-115   162-260 (330)
280 PRK06267 hypothetical protein;  91.8     1.1 2.9E-05   24.6  12.3  192    9-216    58-282 (324)
281 pfam01717 Meth_synt_2 Cobalami  91.7     1.1 2.9E-05   24.6  11.0  137   19-163   156-320 (324)
282 PRK12737 gatY tagatose-bisphos  91.6     1.2   3E-05   24.5  11.8  185    9-201    21-236 (284)
283 PRK12331 oxaloacetate decarbox  91.5    0.88 2.3E-05   25.3   6.5  106   16-123   153-266 (463)
284 PRK08367 porA pyruvate ferredo  91.5    0.66 1.7E-05   26.1   5.9   65   83-148   259-330 (395)
285 TIGR02176 pyruv_ox_red pyruvat  91.4    0.62 1.6E-05   26.3   5.6  142   15-161   147-347 (1194)
286 PRK06806 fructose-bisphosphate  91.3     1.3 3.2E-05   24.3  13.8  186    9-202    21-235 (281)
287 KOG2550 consensus               91.3     1.3 3.2E-05   24.3   9.3  121   77-203   255-389 (503)
288 COG1856 Uncharacterized homolo  91.3     1.3 3.2E-05   24.3  14.9  199   10-216    35-266 (275)
289 PRK09627 oorA 2-oxoglutarate-a  91.2     1.3 3.3E-05   24.3   7.5   61   84-148   273-338 (375)
290 TIGR01304 IMP_DH_rel_2 IMP deh  91.1   0.071 1.8E-06   32.3   0.6  145   52-205   124-297 (376)
291 cd02808 GltS_FMN Glutamate syn  90.9     1.4 3.5E-05   24.1   8.8  106   96-201   198-319 (392)
292 PRK08366 vorA 2-ketoisovalerat  90.9    0.89 2.3E-05   25.3   6.1   63   85-148   263-332 (394)
293 PRK09622 porA pyruvate flavodo  90.9    0.76 1.9E-05   25.7   5.7   64   84-148   266-336 (407)
294 PRK01362 putative translaldola  90.8     1.4 3.6E-05   24.0  14.9  155   51-214    40-206 (214)
295 pfam01120 Alpha_L_fucos Alpha-  90.7     1.4 3.6E-05   24.0   8.8  117   71-200    91-242 (344)
296 cd04736 MDH_FMN Mandelate dehy  90.7     1.4 3.7E-05   23.9  11.9  113  102-220   227-343 (361)
297 cd00956 Transaldolase_FSA Tran  90.6     1.5 3.7E-05   23.9  15.7  159   51-215    40-207 (211)
298 PRK12738 kbaY tagatose-bisphos  90.0     1.6 4.2E-05   23.6  10.3  180    9-200    21-235 (286)
299 cd06811 PLPDE_III_yhfX_like Ty  89.5     1.8 4.6E-05   23.3   8.4  173   21-203    44-262 (382)
300 TIGR00735 hisF imidazoleglycer  89.4     1.8 4.6E-05   23.3   6.9   89  118-212    40-144 (312)
301 KOG1606 consensus               89.3     1.6   4E-05   23.7   6.2   42  174-215   214-256 (296)
302 TIGR01371 met_syn_B12ind 5-met  89.2     1.3 3.4E-05   24.2   5.8  123   17-146   602-752 (778)
303 PRK13523 NADPH dehydrogenase N  89.1     1.9 4.9E-05   23.1   9.3  123   81-208   151-316 (337)
304 PRK10605 N-ethylmaleimide redu  88.6     2.1 5.2E-05   23.0  12.4  121   82-210   169-334 (362)
305 PRK02227 hypothetical protein;  88.6     2.1 5.3E-05   22.9  20.3  180   18-204     9-215 (239)
306 TIGR00343 TIGR00343 pyridoxine  88.4     1.5 3.9E-05   23.8   5.7   43  174-216   210-253 (298)
307 PRK11840 bifunctional sulfur c  88.2     2.2 5.6E-05   22.8  10.2  113   97-216   182-298 (327)
308 COG1692 Calcineurin-like phosp  88.0     1.5 3.8E-05   23.8   5.4   60   70-132   124-189 (266)
309 pfam06073 DUF934 Bacterial pro  87.7     2.3   6E-05   22.6   7.9   76  114-198     1-78  (110)
310 COG0069 GltB Glutamate synthas  86.9     2.6 6.7E-05   22.3   8.1  131   68-199   253-405 (485)
311 PRK11197 lldD L-lactate dehydr  86.9     2.6 6.7E-05   22.3  11.6  113  102-220   236-354 (381)
312 TIGR01418 PEP_synth phosphoeno  86.8     2.7 6.8E-05   22.2  10.0   32   65-99    755-788 (877)
313 cd04737 LOX_like_FMN L-Lactate  86.7     2.7 6.8E-05   22.2  11.5   97  102-202   212-311 (351)
314 PRK08508 biotin synthase; Prov  86.4     2.8 7.1E-05   22.1  14.6  189   15-207    41-260 (279)
315 cd04735 OYE_like_4_FMN Old yel  86.4     2.8 7.1E-05   22.1  10.5  126   81-209   153-325 (353)
316 TIGR01859 fruc_bis_ald_ fructo  86.3     1.1 2.7E-05   24.8   3.9  135   17-161   164-324 (339)
317 cd00947 TBP_aldolase_IIB Tagat  86.3     2.8 7.2E-05   22.1  15.8  183    9-202    16-231 (276)
318 COG0320 LipA Lipoate synthase   86.2     2.8 7.2E-05   22.1   8.8  129   71-203    99-254 (306)
319 COG1891 Uncharacterized protei  86.2     2.8 7.3E-05   22.1  12.8  186   15-206     6-217 (235)
320 pfam01070 FMN_dh FMN-dependent  86.1     2.9 7.3E-05   22.0  15.3  143   54-202   100-259 (301)
321 cd02930 DCR_FMN 2,4-dienoyl-Co  86.0     2.9 7.4E-05   22.0   9.9  122   81-208   146-317 (353)
322 PRK10550 tRNA-dihydrouridine s  85.8       3 7.6E-05   21.9  12.7  141   62-206    62-233 (312)
323 cd03332 LMO_FMN L-Lactate 2-mo  85.7       3 7.7E-05   21.9  11.6  115  102-220   244-362 (383)
324 PRK12999 pyruvate carboxylase;  85.6       3 7.8E-05   21.9   7.0  143   50-197   594-767 (1147)
325 pfam00224 PK Pyruvate kinase,   85.6     3.1 7.8E-05   21.9  12.9  147   70-222   174-340 (348)
326 pfam04476 DUF556 Protein of un  85.3     3.1   8E-05   21.8  17.5  181   18-205     9-216 (235)
327 pfam01791 DeoC DeoC/LacD famil  84.5     3.4 8.7E-05   21.5  10.8  168   16-202    18-230 (231)
328 cd02932 OYE_YqiM_FMN Old yello  84.1     3.5   9E-05   21.4  10.3  121   82-208   164-331 (336)
329 PRK13209 L-xylulose 5-phosphat  83.8     3.4 8.8E-05   21.5   5.6  198   17-217    21-273 (283)
330 COG0191 Fba Fructose/tagatose   83.6     2.5 6.3E-05   22.4   4.7  181    9-200    21-237 (286)
331 COG0620 MetE Methionine syntha  83.4     3.8 9.7E-05   21.3  11.4  153    8-164   148-323 (330)
332 COG2022 ThiG Uncharacterized e  82.9       4  0.0001   21.1   9.3  124   85-215    97-229 (262)
333 cd00635 PLPDE_III_YBL036c_like  82.9       4  0.0001   21.1  13.0  150   49-202    51-222 (222)
334 COG1411 Uncharacterized protei  82.5     4.1  0.0001   21.0  11.5  177   13-210    35-223 (229)
335 cd00717 URO-D Uroporphyrinogen  81.8     3.4 8.6E-05   21.6   4.9   16   76-91    181-196 (335)
336 PRK06801 hypothetical protein;  81.7     4.4 0.00011   20.9  12.7  185    9-201    21-237 (286)
337 pfam01116 F_bP_aldolase Fructo  81.3     4.5 0.00012   20.8  12.7  185    9-201    19-235 (283)
338 COG2069 CdhD CO dehydrogenase/  81.1     1.7 4.4E-05   23.5   3.2  118   71-197   149-285 (403)
339 TIGR00010 TIGR00010 hydrolase,  80.7     4.2 0.00011   21.0   5.0  130   30-166   101-252 (269)
340 PRK12484 nicotinate phosphorib  79.8     4.1  0.0001   21.0   4.8   51  155-205   262-317 (443)
341 PRK09195 gatY tagatose-bisphos  79.7     5.1 0.00013   20.4  13.7  181   10-201    22-236 (284)
342 PRK08659 2-oxoglutarate ferred  79.6     5.2 0.00013   20.4   7.7   61   85-148   273-337 (377)
343 TIGR01037 pyrD_sub1_fam dihydr  79.2     4.1  0.0001   21.0   4.6  168    4-204    93-277 (308)
344 PRK07998 gatY putative fructos  79.0     5.4 0.00014   20.3  12.9  186    9-201    21-233 (283)
345 COG0434 SgcQ Predicted TIM-bar  78.9     5.4 0.00014   20.3  16.1  174   18-203    35-238 (263)
346 cd00288 Pyruvate_Kinase Pyruva  78.5     5.6 0.00014   20.2  11.8  152   65-222   167-338 (480)
347 pfam09370 TIM-br_sig_trns TIM-  77.8     5.8 0.00015   20.1   6.6   53  151-203   194-252 (268)
348 TIGR01036 pyrD_sub2 dihydrooro  77.7     5.9 0.00015   20.1   5.2   81  136-217   266-353 (370)
349 PRK00125 pyrF orotidine 5'-pho  77.4       6 0.00015   20.0   8.6   50  156-205   199-253 (277)
350 PRK00366 ispG 4-hydroxy-3-meth  77.4       6 0.00015   20.0   7.9  100   10-120    32-139 (367)
351 pfam04551 GcpE GcpE protein. I  77.2       6 0.00015   20.0   8.1  100   10-120    21-128 (345)
352 cd01335 Radical_SAM Radical SA  77.2     6.1 0.00015   20.0   8.7   98   17-118    31-146 (204)
353 KOG4201 consensus               76.5     6.3 0.00016   19.8  11.1  192   10-215    85-284 (289)
354 TIGR01919 hisA-trpF bifunction  75.8     6.6 0.00017   19.7  14.2  177   19-205    35-236 (246)
355 PRK05835 fructose-bisphosphate  75.6     2.5 6.3E-05   22.4   2.6  182    9-200    20-258 (307)
356 TIGR01858 tag_bisphos_ald clas  75.5     2.4 6.2E-05   22.5   2.6  178   11-200    18-233 (282)
357 pfam01208 URO-D Uroporphyrinog  75.2     6.9 0.00017   19.6   7.2   16   76-91    183-198 (337)
358 COG0042 tRNA-dihydrouridine sy  74.7       7 0.00018   19.5  12.9  139   62-206    66-237 (323)
359 pfam09587 PGA_cap Bacterial ca  74.6     7.1 0.00018   19.5   7.3  123   71-199    61-212 (237)
360 TIGR02708 L_lactate_ox L-lacta  74.6       6 0.00015   20.0   4.4   54  151-205   267-322 (368)
361 cd04743 NPD_PKS 2-Nitropropane  74.5     7.1 0.00018   19.5  14.1  147   52-205    44-211 (320)
362 PRK09243 nicotinate phosphorib  74.5     5.9 0.00015   20.0   4.3   50  154-203   268-322 (466)
363 pfam05582 Peptidase_U57 YabG p  74.5     7.1 0.00018   19.5   9.3  116   90-206   108-237 (287)
364 CHL00197 carA carbamoyl-phosph  74.4     7.2 0.00018   19.5   8.3   96   98-197   117-223 (383)
365 PRK07709 fructose-bisphosphate  74.4     7.2 0.00018   19.5  13.8  185    9-200    21-236 (285)
366 pfam05853 DUF849 Prokaryotic p  74.3     7.2 0.00018   19.5  14.9  184   15-204    24-237 (274)
367 PRK13352 thiamine biosynthesis  74.2     7.2 0.00018   19.5  10.2  186    5-200    62-299 (433)
368 COG1830 FbaB DhnA-type fructos  74.2     7.3 0.00018   19.5  12.3  175   15-216    41-256 (265)
369 COG0821 gcpE 1-hydroxy-2-methy  74.0     7.3 0.00019   19.4  13.5   96   14-120    33-133 (361)
370 pfam01168 Ala_racemase_N Alani  73.4     7.6 0.00019   19.3  14.8  147   51-203    55-214 (216)
371 KOG3157 consensus               73.4     7.6 0.00019   19.3   6.3  154   48-206    56-239 (244)
372 cd00740 MeTr MeTr subgroup of   73.4     7.6 0.00019   19.3   8.3  109    6-119    15-129 (252)
373 PTZ00333 triosephosphate isome  73.2     7.6  0.0002   19.3  16.9  124   78-202    82-240 (252)
374 COG0280 Pta Phosphotransacetyl  73.1     7.7  0.0002   19.3   6.6  198    7-207    38-271 (327)
375 PRK07226 fructose-bisphosphate  73.0     7.7  0.0002   19.3  12.1  175   16-217    38-251 (266)
376 PRK10076 pyruvate formate lyas  72.7     7.8  0.0002   19.2   4.8   21  154-174   191-211 (213)
377 cd06591 GH31_xylosidase_XylS X  72.4       8  0.0002   19.2   8.1   26   95-120    64-89  (319)
378 pfam02593 DUF166 Uncharacteriz  72.2     8.1 0.00021   19.2  10.0  124   49-179     8-141 (215)
379 TIGR03569 NeuB_NnaB N-acetylne  72.1     8.1 0.00021   19.1  15.0  198   13-220    12-255 (329)
380 cd06502 TA_like Low-specificit  71.4     8.4 0.00021   19.0   6.1   72  138-216   130-222 (338)
381 PRK00694 4-hydroxy-3-methylbut  71.3     8.5 0.00022   19.0   9.9   52   15-69     43-97  (606)
382 TIGR01235 pyruv_carbox pyruvat  70.9     3.4 8.7E-05   21.6   2.4  141   50-197   611-785 (1169)
383 cd04734 OYE_like_3_FMN Old yel  70.6     8.8 0.00022   18.9  10.5  138   68-208   129-326 (343)
384 TIGR03527 selenium_YedF seleni  70.4     8.9 0.00023   18.9   7.4   74  133-206    84-169 (194)
385 cd02929 TMADH_HD_FMN Trimethyl  70.1       9 0.00023   18.9  10.3  139   67-208   137-330 (370)
386 smart00854 PGA_cap Bacterial c  69.9     9.1 0.00023   18.8   9.3  126   71-199    59-214 (239)
387 PRK12656 fructose-6-phosphate   69.5     9.3 0.00024   18.8  15.2  155   52-214    42-210 (222)
388 KOG0538 consensus               68.7     9.6 0.00025   18.7   9.0  111   88-202   201-313 (363)
389 TIGR00433 bioB biotin synthase  68.5     7.1 0.00018   19.5   3.6  130   76-207   167-337 (350)
390 pfam07722 Peptidase_C26 Peptid  68.1     9.9 0.00025   18.6   4.5   51  102-153    29-83  (219)
391 pfam01964 ThiC ThiC family. Th  68.0     9.9 0.00025   18.6   9.6  186    5-200    60-294 (421)
392 PRK12655 fructose-6-phosphate   67.1      10 0.00026   18.5  16.0  156   51-215    40-209 (220)
393 pfam03102 NeuB NeuB family. Ne  67.0      10 0.00027   18.5  12.6  190   23-221     2-234 (240)
394 PRK06739 pyruvate kinase; Vali  66.6      11 0.00027   18.4  13.2  154   64-223   157-331 (352)
395 PRK06520 5-methyltetrahydropte  66.6      11 0.00027   18.4  11.1   99   17-115   170-299 (370)
396 TIGR02494 PFLE_PFLC glycyl-rad  66.5     4.7 0.00012   20.7   2.4   97   99-218   147-250 (305)
397 cd02922 FCB2_FMN Flavocytochro  66.3      11 0.00027   18.4   9.3   98  102-202   204-306 (344)
398 KOG2335 consensus               66.0      11 0.00028   18.3  10.3  140   62-203    73-239 (358)
399 COG4981 Enoyl reductase domain  65.9      11 0.00028   18.3   8.7  139   63-203    90-259 (717)
400 TIGR01161 purK phosphoribosyla  65.9      11 0.00028   18.3   7.8  113   65-181    44-188 (386)
401 cd00957 Transaldolase_TalAB Tr  65.6     7.9  0.0002   19.2   3.4  150   49-202    79-248 (313)
402 TIGR00583 mre11 DNA repair pro  65.6      11 0.00028   18.3   4.7   38  181-218    33-72  (424)
403 PRK13962 bifunctional phosphog  65.4      11 0.00028   18.3  15.5  183   20-206   421-644 (653)
404 cd00958 DhnA Class I fructose-  65.3      11 0.00029   18.2  16.3  175   15-216    19-233 (235)
405 PRK11858 aksA trans-homoaconit  65.2      11 0.00029   18.2  14.4  167   17-195    26-218 (378)
406 cd00377 ICL_PEPM Members of th  64.8      11 0.00029   18.2   4.1  138   51-203    58-232 (243)
407 cd06589 GH31 The enzymes of gl  64.8      11 0.00029   18.2   5.1   65   52-123    28-92  (265)
408 COG1038 PycA Pyruvate carboxyl  64.4      12  0.0003   18.1   4.3  144   51-199   597-771 (1149)
409 PRK10063 predicted glycosyl tr  64.3      11 0.00028   18.3   3.9   70   15-92     12-89  (248)
410 PRK06846 deaminase; Validated   64.2      12  0.0003   18.1  15.7  182   18-213   115-332 (410)
411 PRK09240 thiH thiamine biosynt  64.1      12  0.0003   18.1   4.8  178   14-200   104-322 (371)
412 COG0826 Collagenase and relate  64.0      12  0.0003   18.1   7.7  123   75-198    82-250 (347)
413 pfam01487 DHquinase_I Type I 3  63.9      12  0.0003   18.1  10.1  120    9-132     2-137 (222)
414 PRK09230 cytosine deaminase; P  63.8      12  0.0003   18.1  14.2  182   19-212   104-333 (426)
415 PRK07535 methyltetrahydrofolat  63.5      12 0.00031   18.0  10.3  177    7-197    15-228 (268)
416 PRK08654 pyruvate carboxylase   63.3     7.6 0.00019   19.3   3.0  128   21-151    16-169 (497)
417 COG3749 Uncharacterized protei  62.9      12 0.00032   18.0   4.8   83  106-197    48-132 (167)
418 COG0074 SucD Succinyl-CoA synt  62.7      13 0.00032   17.9   6.4   58   52-111    55-117 (293)
419 COG0635 HemN Coproporphyrinoge  62.2      12  0.0003   18.1   3.8  174   17-199    69-300 (416)
420 KOG0053 consensus               62.1      13 0.00033   17.9   7.0  131   78-219   109-253 (409)
421 PRK08185 hypothetical protein;  62.1      13 0.00033   17.9  12.4  183    9-201    16-232 (283)
422 PRK13347 coproporphyrinogen II  60.8      14 0.00034   17.7   6.4  153   17-175    85-287 (453)
423 PRK12679 cbl transcriptional r  60.5      14 0.00035   17.7   5.2  139   51-203   109-250 (316)
424 PRK05301 pyrroloquinoline quin  60.5      14 0.00035   17.7   9.5  123   14-145    47-197 (375)
425 PRK08591 acetyl-CoA carboxylas  60.5      14 0.00035   17.7   3.9   79   70-150    85-168 (449)
426 cd00019 AP2Ec AP endonuclease   60.3      14 0.00035   17.7   9.9  201   17-218    10-278 (279)
427 cd06549 GH18_trifunctional GH1  59.7      14 0.00036   17.6   7.1  127   32-158    30-194 (298)
428 cd03310 CIMS_like CIMS - Cobal  59.1      14 0.00037   17.5  12.6   68   17-93    151-229 (321)
429 PRK13479 2-aminoethylphosphona  59.0      15 0.00037   17.5   6.4   24   89-112   136-163 (368)
430 COG1488 PncB Nicotinic acid ph  58.9      15 0.00037   17.5   9.2   98  102-205   224-331 (405)
431 COG1603 RPP1 RNase P/RNase MRP  58.8      15 0.00037   17.5  13.6  138   68-220     4-158 (229)
432 TIGR00742 yjbN TIM-barrel prot  58.7      13 0.00033   17.8   3.5  129   10-138    60-230 (326)
433 PRK13237 tyrosine phenol-lyase  58.5      15 0.00038   17.5   6.3  160   16-187    21-229 (459)
434 TIGR02090 LEU1_arch isopropylm  58.2      15 0.00038   17.5   4.6  140   51-195    51-218 (371)
435 PRK00507 deoxyribose-phosphate  58.2      15 0.00038   17.4   4.4  164   15-199    20-210 (221)
436 cd00423 Pterin_binding Pterin   57.9      15 0.00039   17.4  13.5  145   13-165    20-195 (258)
437 PRK07119 2-ketoisovalerate fer  57.6      15 0.00039   17.4   8.2   61   84-148   244-309 (350)
438 PRK13210 putative L-xylulose 5  57.4      15 0.00039   17.4   6.6  197   17-215    16-272 (284)
439 smart00518 AP2Ec AP endonuclea  56.6      16  0.0004   17.3  11.8   77   19-95     12-107 (273)
440 COG3669 Alpha-L-fucosidase [Ca  56.4      16 0.00041   17.3   4.2   88   20-118    13-122 (430)
441 PRK07178 acetyl-CoA carboxylas  56.4      13 0.00033   17.9   3.1   79   70-150    84-167 (471)
442 cd07205 Pat_PNPLA6_PNPLA7_NTE1  56.3      12 0.00032   17.9   3.1   26  171-196   146-172 (175)
443 PRK05481 lipoyl synthase; Prov  56.1      16 0.00041   17.2   9.1  129   71-203    81-237 (289)
444 PRK12376 putative translaldola  55.8      16 0.00042   17.2  11.8  145   52-204    49-208 (238)
445 pfam04263 TPK_catalytic Thiami  55.8       9 0.00023   18.9   2.3  112   51-176     5-122 (122)
446 cd01570 NAPRTase_A Nicotinate   55.8      16 0.00042   17.2   5.5   52  154-205   260-316 (327)
447 KOG4202 consensus               54.4      17 0.00044   17.1   7.5  124   63-200    92-219 (227)
448 TIGR00875 talC transaldolase,   54.4      17 0.00044   17.1   9.0  176   15-214     6-209 (216)
449 COG0380 OtsA Trehalose-6-phosp  54.3      17 0.00044   17.0   4.1   83   84-175   202-289 (486)
450 PRK09454 ugpQ cytoplasmic glyc  53.8      18 0.00045   17.0   6.3   27   18-44     23-52  (249)
451 PRK05437 isopentenyl pyrophosp  53.7      18 0.00045   17.0   5.1  115   81-201   144-294 (351)
452 TIGR01678 FAD_lactone_ox sugar  53.7      15 0.00039   17.4   3.2  103   88-191    16-124 (505)
453 pfam00724 Oxidored_FMN NADH:fl  53.4      18 0.00046   16.9   9.4  127   81-208   152-327 (336)
454 PRK09432 metF 5,10-methylenete  53.3      18 0.00046   16.9  12.6  109    9-119    31-153 (296)
455 pfam07287 DUF1446 Protein of u  52.5      18 0.00047   16.9   8.7   99   99-204    60-177 (362)
456 cd01989 STK_N The N-terminal d  52.4      19 0.00047   16.9   7.8   42  161-202    70-115 (146)
457 TIGR03326 rubisco_III ribulose  52.3      19 0.00047   16.8  13.0  199   15-218   158-387 (412)
458 KOG0369 consensus               52.1      19 0.00048   16.8   4.5  145   51-196   621-793 (1176)
459 PRK06851 hypothetical protein;  51.8      19 0.00048   16.8   4.7   65  112-183   193-258 (368)
460 cd07228 Pat_NTE_like_bacteria   51.1      19  0.0005   16.7   3.5   26  171-196   146-172 (175)
461 PRK12928 lipoyl synthase; Prov  51.1      19  0.0005   16.7   9.4  130   71-204    89-246 (290)
462 COG1954 GlpP Glycerol-3-phosph  51.1      12 0.00031   18.0   2.3  137   10-196    28-172 (181)
463 KOG3974 consensus               50.6      20  0.0005   16.7   6.5   83   81-176    53-139 (306)
464 TIGR02146 LysS_fung_arch homoc  50.5      20 0.00051   16.7   7.3  161   23-195    26-220 (355)
465 COG1902 NemA NADH:flavin oxido  50.4      20 0.00051   16.6   7.8  124   82-210   159-331 (363)
466 TIGR02855 spore_yabG sporulati  50.1      20 0.00051   16.6   8.1  116   91-207   117-246 (292)
467 cd06593 GH31_xylosidase_YicI Y  49.8      20 0.00052   16.6   5.5   24   15-38     22-47  (308)
468 smart00052 EAL Putative diguan  49.7      20 0.00052   16.6   7.3  100   99-206   135-238 (241)
469 PRK05500 bifunctional orotidin  49.6      21 0.00052   16.6   7.1   99  114-216   118-257 (478)
470 cd02874 GH18_CFLE_spore_hydrol  49.4      21 0.00053   16.6   5.9  120   17-142    17-178 (313)
471 PRK05093 argD bifunctional N-s  49.3      21 0.00053   16.5   7.9  163   36-200    43-255 (403)
472 PRK11449 putative deoxyribonuc  49.1      21 0.00053   16.5   7.2   55   59-116   124-179 (258)
473 COG2513 PrpB PEP phosphonomuta  49.0      21 0.00053   16.5   4.6  149   51-204    67-241 (289)
474 PRK13238 tnaA tryptophanase; P  48.5      21 0.00054   16.5   6.3   65  119-186   159-228 (461)
475 PRK08255 salicylyl-CoA 5-hydro  48.0      22 0.00055   16.4   7.8  120   81-206   565-731 (770)
476 COG4992 ArgD Ornithine/acetylo  47.8      22 0.00056   16.4   9.7  165   35-203    44-258 (404)
477 cd03308 CmuA_CmuC_like CmuA_Cm  47.5      22 0.00056   16.4   8.3   42  149-191   248-291 (378)
478 KOG2672 consensus               47.4      22 0.00056   16.4   5.5   41   72-112   142-190 (360)
479 pfam10566 Glyco_hydro_97 Glyco  47.4      21 0.00054   16.5   3.1   40  158-197   353-398 (643)
480 TIGR00677 fadh2_euk methylenet  47.3      22 0.00057   16.3   3.9   84   99-196    82-192 (312)
481 PRK09249 coproporphyrinogen II  47.0      22 0.00057   16.3   4.2  193   16-214    85-351 (456)
482 TIGR01179 galE UDP-glucose 4-e  46.9      12  0.0003   18.1   1.7   15  140-154   185-201 (341)
483 COG0119 LeuA Isopropylmalate/h  46.7      23 0.00058   16.3  13.2  172   18-196    25-222 (409)
484 TIGR00874 talAB transaldolase;  46.5      12 0.00032   18.0   1.8   69   49-117    83-160 (324)
485 TIGR01513 NAPRTase_put putativ  46.5      23 0.00058   16.3   3.4  101   99-205   236-354 (523)
486 PRK05826 pyruvate kinase; Prov  46.3      23 0.00059   16.2  12.4  145   71-221   172-337 (461)
487 cd06598 GH31_transferase_CtsZ   46.1      23 0.00059   16.2   5.3   24   15-38     22-47  (317)
488 pfam01212 Beta_elim_lyase Beta  45.3      24 0.00061   16.2   7.8   91  122-216   110-225 (288)
489 PRK05678 succinyl-CoA syntheta  45.2      24 0.00061   16.1   4.7   28    9-36     68-95  (289)
490 TIGR02346 chap_CCT_theta T-com  44.8      19 0.00049   16.7   2.5   22  174-197   395-416 (554)
491 PRK08610 fructose-bisphosphate  44.7      24 0.00062   16.1  16.0  184    9-201    21-237 (286)
492 cd07376 PLPDE_III_DSD_D-TA_lik  44.6      24 0.00062   16.1   8.3  171   11-206    44-227 (345)
493 PRK07534 methionine synthase I  44.0      25 0.00064   16.0   7.6  116   78-195   137-276 (335)
494 TIGR00873 gnd 6-phosphoglucona  43.3      26 0.00065   16.0   8.4  120   88-222    24-160 (480)
495 PRK05660 coproporphyrinogen II  43.1      26 0.00066   15.9   3.8  122   76-199   108-267 (378)
496 pfam12617 LdpA_C Iron-Sulfur b  42.9      26 0.00066   15.9   9.2  110   80-190     2-124 (182)
497 PRK05586 biotin carboxylase; V  42.7      26 0.00067   15.9   3.2   79   70-150    85-168 (447)
498 PTZ00187 succinyl-CoA syntheta  42.3      26 0.00067   15.9   5.7   13   84-96    103-115 (309)
499 TIGR02635 RhaI_grampos L-rhamn  42.3      15 0.00037   17.5   1.6  103   17-130   116-228 (382)
500 PRK08223 hypothetical protein;  42.2      27 0.00068   15.9   5.7   29   61-91     95-123 (287)

No 1  
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=100.00  E-value=0  Score=561.85  Aligned_cols=209  Identities=47%  Similarity=0.825  Sum_probs=203.2

Q ss_pred             EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC-CCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             8817063258899999999999659989999734263458434178999986412-564168567885120336764047
Q gi|254780975|r    6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY-SDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      +|+||||+|||.+|.+|++.++++|+||+|+|+||||||||+||||..++.||++ |++|+||||||++|++|++.|+++
T Consensus         1 ~iAPSILsADf~rLgee~~~v~~AGaD~iH~DVMDGHFVPNlT~Gp~v~~~~r~~g~~~P~DVHLMv~~pd~~~~~Fa~a   80 (216)
T TIGR01163         1 LIAPSILSADFARLGEEVKAVEEAGADLIHVDVMDGHFVPNLTFGPPVLEALRKYGTKLPIDVHLMVENPDRYIEDFAEA   80 (216)
T ss_pred             CCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf             96512555047779999999996699789986247971771002778999887407952126630357857778899970


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             76079997066421589998677649825998523334478998862014028998306776533220135778998654
Q gi|254780975|r   85 GCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKAL  164 (224)
Q Consensus        85 g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~  164 (224)
                      |||+|+||+|++.+++|++++||+.|+++||++||+||+|.++++|+++|.||+||||||||||+|+|.+++|||++|++
T Consensus        81 GA~~I~vH~Ea~~h~~R~l~~Ik~~G~~AG~v~NP~TPl~~~~~~L~~~D~VLlMSVnPGFgGQkFIP~~~~Kir~~R~~  160 (216)
T TIGR01163        81 GADIITVHAEATEHIHRLLQLIKELGAKAGIVLNPATPLEALEYVLEDVDLVLLMSVNPGFGGQKFIPETLEKIRELRKM  160 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             89989984377626799999999718970688679999878998987629899887607998841105789999999999


Q ss_pred             HH--CCC--CEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHHHH
Q ss_conf             31--386--52698158998899999967998999742663789--9899999999
Q gi|254780975|r  165 IG--KRS--ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK--GEISYAKRLN  214 (224)
Q Consensus       165 ~~--~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~--d~~~~~~~l~  214 (224)
                      ++  +.+  +.||||||||.+|+..+.+||||++|+|||||+++  |..+.++.|+
T Consensus       161 id~~~~~~~~~ieVDGGv~~~ni~~~~~AGAD~~VaGSaiF~~~s~d~~~~i~~lr  216 (216)
T TIGR01163       161 IDKLELGLSILIEVDGGVNEDNIAEVAEAGADILVAGSAIFGADSLDYKEAIRSLR  216 (216)
T ss_pred             HHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHCC
T ss_conf             98602799558997179897679999975898999831020888668799997339


No 2  
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00  E-value=0  Score=494.43  Aligned_cols=220  Identities=44%  Similarity=0.774  Sum_probs=207.9

Q ss_pred             CCCCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC-CCCEEEEEEEEEECCHHHH
Q ss_conf             979818817063258899999999999659989999734263458434178999986412-5641685678851203367
Q gi|254780975|r    1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY-SDSVFDCHLMISSIDSHIN   79 (224)
Q Consensus         1 M~k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~~P~~~i~   79 (224)
                      |.+ ++|||||+|+||++|++++++++++|+||+|+|||||+||||+||||++++++|+. |++|+||||||++|++|++
T Consensus         1 m~~-~~IspSil~ad~~~L~~ei~~l~~~g~d~iHiDImDG~FVpN~t~g~~~i~~ir~~~~~~plDvHLMv~~P~~~i~   79 (223)
T PRK08745          1 MQP-TAIAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVP   79 (223)
T ss_pred             CCC-CEEEHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHH
T ss_conf             999-7986866515999999999999976999899827679707755709599999996189975377898339899999


Q ss_pred             HHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             64047760799970664215899986776498259985233344789988620140289983067765332201357789
Q gi|254780975|r   80 IIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIR  159 (224)
Q Consensus        80 ~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~  159 (224)
                      .|.++|+|+|+||+|++.++.+++++||++|+++|+||||+||++.+++|++.+|+||+|||+|||+||+|+|.+++||+
T Consensus        80 ~~~~aGad~i~~H~Ea~~~~~~~i~~ik~~g~k~GlalnP~T~~~~l~~~l~~~D~VliMtV~PGf~GQ~f~~~~l~KI~  159 (223)
T PRK08745         80 DFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLR  159 (223)
T ss_pred             HHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHH
T ss_conf             99973997899960644299999999998398446774699987999998864798999875699887545688999999


Q ss_pred             HHHHHHHCC--CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             986543138--65269815899889999996799899974266378998999999999999786279
Q gi|254780975|r  160 QAKALIGKR--SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSALAID  224 (224)
Q Consensus       160 ~l~~~~~~~--~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~~a~a~~  224 (224)
                      ++|+++++.  ++.|+||||||.+|++.+.++|||++|+||+||+++|+.   +.+++||.+..|+.
T Consensus       160 ~l~~~~~~~~~~~~I~VDGGI~~~ti~~l~~aGad~~V~GSaiF~~~d~~---~~i~~lr~~~~~~~  223 (223)
T PRK08745        160 AIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYA---QVIAQMRAAVAAVR  223 (223)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH---HHHHHHHHHHHHCC
T ss_conf             99999986499945999788798999999986999999741775799999---99999999998659


No 3  
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=100.00  E-value=0  Score=492.79  Aligned_cols=214  Identities=46%  Similarity=0.759  Sum_probs=204.8

Q ss_pred             CCCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHH
Q ss_conf             79818817063258899999999999659989999734263458434178999986412564168567885120336764
Q gi|254780975|r    2 TPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINII   81 (224)
Q Consensus         2 ~k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~   81 (224)
                      +|+++|||||+|+|+.+|++++++++++|+||+|+|||||+||||+|||++++++||++|++|+||||||++|++|+++|
T Consensus         1 m~~~~IspSil~ad~~~l~~~i~~l~~~g~~~lHiDImDG~FVpn~t~g~~~v~~i~~~t~~~~DvHLMv~~P~~~i~~~   80 (220)
T PRK05581          1 MKMVLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDF   80 (220)
T ss_pred             CCCCEEEHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECHHHHHHHH
T ss_conf             99759868774079999999999999769998999575784477556399999999841899647899971888879999


Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             04776079997066421589998677649825998523334478998862014028998306776533220135778998
Q gi|254780975|r   82 ADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQA  161 (224)
Q Consensus        82 ~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l  161 (224)
                      .++|+|+|+||+|+++++.+++++||++|+++||||||+||++.+++|++.+|+||+|||+|||+||+|++.+++||+++
T Consensus        81 ~~~g~d~I~~H~Ea~~~~~~~i~~ik~~g~k~Glalnp~T~~~~l~~~l~~iD~VlvMtV~PGf~GQ~f~~~~l~ki~~l  160 (220)
T PRK05581         81 AKAGADIITFHVEASEHIHRLLQLIKEAGIKAGLVLNPATPLEYLEYVLPLLDLVLLMSVNPGFGGQKFIPEVLEKIREV  160 (220)
T ss_pred             HHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             97399889981675027999999999749970467669999899999987415258998658878764556699999999


Q ss_pred             HHHHHCCC--CEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf             65431386--5269815899889999996799899974266378998999999999
Q gi|254780975|r  162 KALIGKRS--ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND  215 (224)
Q Consensus       162 ~~~~~~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~  215 (224)
                      |+++.+++  +.|+||||||.+|++.+.++|||++|+||+||+++|+.+.+++|++
T Consensus       161 ~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~GS~iF~~~d~~~~i~~lk~  216 (220)
T PRK05581        161 RKLIDERGLDILIEVDGGVNAENIKECAEAGADVFVAGSAVFGAPDYKEAIDELRA  216 (220)
T ss_pred             HHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
T ss_conf             99998459975599978989899999997799999979488579999999999999


No 4  
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=100.00  E-value=0  Score=492.99  Aligned_cols=215  Identities=47%  Similarity=0.826  Sum_probs=204.0

Q ss_pred             CCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHC
Q ss_conf             98188170632588999999999996599899997342634584341789999864125641685678851203367640
Q gi|254780975|r    3 PSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIA   82 (224)
Q Consensus         3 k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~   82 (224)
                      ++++|+|||||+||.+|++++++++++|+||+|+||||||||||+||||+.++++|+.|++|+||||||++|++|++.|+
T Consensus         2 ~~~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa   81 (220)
T COG0036           2 KMMKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFA   81 (220)
T ss_pred             CCCEEEEEHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
T ss_conf             97466415642777679999999997699879996457876787334899999886368973589973289899999999


Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf             47760799970664215899986776498259985233344789988620140289983067765332201357789986
Q gi|254780975|r   83 DAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK  162 (224)
Q Consensus        83 ~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~  162 (224)
                      ++|+|+|+||+|++.++.+++++||+.|+++|++|||+||++.++++++++|+||+|||+|||+||+|++.+++||+++|
T Consensus        82 ~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr  161 (220)
T COG0036          82 KAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELR  161 (220)
T ss_pred             HHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             81999899971277689999999997598577997899977899989865789999857799866314799999999999


Q ss_pred             HHHHCC-CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf             543138-6526981589988999999679989997426637899899999999999
Q gi|254780975|r  163 ALIGKR-SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK  217 (224)
Q Consensus       163 ~~~~~~-~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~  217 (224)
                      ++++++ ++.|+||||||.+|++.+.++|||++|+||++|+++|..+..+.++.+.
T Consensus       162 ~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~~  217 (220)
T COG0036         162 AMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGADDYKATIRELRGEL  217 (220)
T ss_pred             HHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHH
T ss_conf             97402477599996896988899999739999999777867811999999999876


No 5  
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=100.00  E-value=0  Score=489.73  Aligned_cols=210  Identities=30%  Similarity=0.459  Sum_probs=203.4

Q ss_pred             EEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             18817063258899999999999659989999734263458434178999986412564168567885120336764047
Q gi|254780975|r    5 IQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         5 ~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      |+|||||+|+|+++|++++++++++|+||+|+|||||+||||+||||++++++|++|+.|+||||||++|++|+++|.++
T Consensus         1 m~IsPSil~ad~~~L~~ei~~l~~~g~d~lHiDIMDG~FVPNitfg~~~v~~ir~~t~~p~DvHLMv~~P~~~i~~~~~~   80 (210)
T PRK08005          1 MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQYTRHPLSFHLMVSSPQRWLPWLAAI   80 (210)
T ss_pred             CEEEHHHHHHCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHC
T ss_conf             98865565448999999999999779998998288898277456298999999861899807999868889999999972


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             76079997066421589998677649825998523334478998862014028998306776533220135778998654
Q gi|254780975|r   85 GCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKAL  164 (224)
Q Consensus        85 g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~  164 (224)
                      |+|+|+||+|++.++.++++.||++|+++||||||+||++.+++|++.+|+||+|||+|||+||+|++.+++||+++|+.
T Consensus        81 g~d~it~H~Ea~~~~~~~i~~Ik~~g~k~GlAlnP~T~i~~~~~~l~~vD~VLvMtV~PGf~GQ~Fi~~~~~KI~~~r~~  160 (210)
T PRK08005         81 RPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREH  160 (210)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99859993567769999999999749807888379998799873040079899987789998721178899999999962


Q ss_pred             HHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf             3138652698158998899999967998999742663789989999999999
Q gi|254780975|r  165 IGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       165 ~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l  216 (224)
                      +++  ..|+||||||.+|++.+.++|||++|+||++|+++|+.+++.+++.|
T Consensus       161 ~~~--~~I~vDGGIn~~t~~~~~~aGad~~V~GSaiF~~~d~~~~i~~lr~l  210 (210)
T PRK08005        161 FPA--AECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFTAL  210 (210)
T ss_pred             CCC--CCEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHCC
T ss_conf             877--88899788788999999986999999790653699999999998639


No 6  
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=100.00  E-value=0  Score=490.23  Aligned_cols=216  Identities=23%  Similarity=0.427  Sum_probs=205.3

Q ss_pred             CCCCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHH
Q ss_conf             97981881706325889999999999965998999973426345843417899998641256416856788512033676
Q gi|254780975|r    1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINI   80 (224)
Q Consensus         1 M~k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~   80 (224)
                      |+|+.||||||||+||++|++++++++++|+||+|+||||||||||+||||+.+++++  ++.++||||||++|++|++.
T Consensus         9 ~m~~~kIspSIL~aD~~~L~~ei~~l~~~g~d~lHiDIMDG~FVPNitfg~~~v~~l~--~~~~~DvHLMV~~P~~~i~~   86 (235)
T PRK08091          9 LLKSQPLSVGILAGQWLALHRYLQQLEALNQPLLHFDIMDGQFSPQFTVGPWAVGQFP--QTFIKDVHLMVADQWTVAKA   86 (235)
T ss_pred             HHHCCCEEHHHHHHCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHC--CCCCCCEEEEECCHHHHHHH
T ss_conf             8523753599875189999999999997799999981858876784322899999737--49997266433888999999


Q ss_pred             HCCCCCCEEEEECCCCCCHHHHHHHHHHC---------CCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCC
Q ss_conf             40477607999706642158999867764---------982599852333447899886201402899830677653322
Q gi|254780975|r   81 IADAGCDIITFHPESSPHIRRSLRTIHAM---------GKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLI  151 (224)
Q Consensus        81 ~~~~g~d~i~~H~E~~~~~~~~i~~i~~~---------g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~  151 (224)
                      |.++|+|+|+||+|++.++.+++++||+.         |+++||||||+||++.+++|++.+|+||+|||+|||+||+|+
T Consensus        87 ~~~aGad~it~H~Ea~~~~~~~i~~i~~~~~~~~~~~~~~~~GlAlnP~Tpve~l~~~L~~vD~VLvMtV~PGfgGQ~fi  166 (235)
T PRK08091         87 CVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVLRGISLCPATPLDVLIPYLSDVDVIQLLTLDPRYGSKMRS  166 (235)
T ss_pred             HHHCCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCC
T ss_conf             99759989997545555889999999983420222220750138979999889999987053999998766898888678


Q ss_pred             CHHHHHHHHHHHHHHCCCC--EEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             0135778998654313865--269815899889999996799899974266378998999999999999
Q gi|254780975|r  152 ESTIPKIRQAKALIGKRSI--SLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       152 ~~~l~kI~~l~~~~~~~~~--~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
                      +++++||+++|+++++++.  .|+||||||.+|++.+.++|||++|+||++|+++|+.+.++++++|.|
T Consensus       167 ~~~l~KI~~l~~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGad~~V~GS~iF~~~d~~e~i~~lk~l~~  235 (235)
T PRK08091        167 SDLHERVAQLLCLLGDKREGKLIVIDGSMTQDQLPSLIAQGIDWVVSGSALFSDDRLVENLRSWKAMFK  235 (235)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHCCCCCHHHHHHHHHHHHC
T ss_conf             789999999999999649991599848989888999998399999978243379999999999998529


No 7  
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00  E-value=0  Score=484.50  Aligned_cols=208  Identities=46%  Similarity=0.820  Sum_probs=201.4

Q ss_pred             ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC-CCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf             817063258899999999999659989999734263458434178999986412-5641685678851203367640477
Q gi|254780975|r    7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY-SDSVFDCHLMISSIDSHINIIADAG   85 (224)
Q Consensus         7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~~P~~~i~~~~~~g   85 (224)
                      |||||+|+|+.+|++++++++++|+||+|+|||||+||||+|||+++++++|++ |+.|+||||||++|++|+++|.++|
T Consensus         2 IspSil~ad~~~L~~ei~~l~~~g~d~lHiDIMDG~FVPNitfg~~~v~~ir~~~t~~~~DvHLMv~~P~~~i~~~~~aG   81 (220)
T PRK08883          2 IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAG   81 (220)
T ss_pred             EEHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCC
T ss_conf             50776432999999999999976999899817789858865669899999996589987578998338888899999759


Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             60799970664215899986776498259985233344789988620140289983067765332201357789986543
Q gi|254780975|r   86 CDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI  165 (224)
Q Consensus        86 ~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~  165 (224)
                      +|+|+||+|+++++.+++++||++|+++|+||||+||++.+++|++.+|+||+|||+|||+||+|++.+++||+++|+++
T Consensus        82 ad~I~~H~Ea~~~~~~~i~~Ik~~g~k~GlalnP~T~~~~l~~~l~~~D~VLvMtV~PGf~GQ~f~~~~l~Ki~~l~~~~  161 (220)
T PRK08883         82 ASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLAHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMI  161 (220)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             98899857765499999999998599668884799987999999974697999874589887545577999999999988


Q ss_pred             HCCC--CEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf             1386--526981589988999999679989997426637899899999999
Q gi|254780975|r  166 GKRS--ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLN  214 (224)
Q Consensus       166 ~~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~  214 (224)
                      ++++  +.|+||||||.+|++.+.++|||++|+||++|+++|+.+.+++++
T Consensus       162 ~~~~~~~~I~VDGGI~~~ti~~l~~aGad~~V~GS~iF~~~d~~~~i~~lr  212 (220)
T PRK08883        162 DASGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMR  212 (220)
T ss_pred             HHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
T ss_conf             744998079998987899999999879999996826748999999999999


No 8  
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=100.00  E-value=0  Score=481.46  Aligned_cols=215  Identities=34%  Similarity=0.604  Sum_probs=197.8

Q ss_pred             EEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             18817063258899999999999659989999734263458434178999986412564168567885120336764047
Q gi|254780975|r    5 IQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         5 ~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      |||||||||+|+.+|+++++.++ .++||+|+|||||+||||+||||++++.+|++|++|+||||||++|++|+++|.++
T Consensus         1 ~kI~PSil~aD~~~L~~~i~~~~-~~~d~iHiDIMDG~FVPN~tfgp~~v~~ir~~t~~p~DvHLMv~~P~~~i~~~~~~   79 (227)
T PRK09722          1 MKISPSLMCMDLLKFKEQIEFLD-SKADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDCHLMVTRPQDYIAQLADA   79 (227)
T ss_pred             CEEEHHHHHCCHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHC
T ss_conf             98768676308999999999997-48988999561686078545186599999744899647899965888889999854


Q ss_pred             CCCEEEEECCCC-CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf             760799970664-2158999867764982599852333447899886201402899830677653322013577899865
Q gi|254780975|r   85 GCDIITFHPESS-PHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKA  163 (224)
Q Consensus        85 g~d~i~~H~E~~-~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~  163 (224)
                      |+|+|+||+|+. .++.+++++||+.|+++||||||+||++.+++|++++|+||+|||+|||+||+|++++++||+++|+
T Consensus        80 gad~It~H~Ea~~~~~~~~i~~Ik~~g~k~GlAlnP~Tpi~~i~~~l~~vD~VLvMsV~PGf~GQ~Fi~~~l~KI~~lr~  159 (227)
T PRK09722         80 GADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVEAIKYYIHLADKVTVMTVDPGFAGQPFIPEMLDKIAELKA  159 (227)
T ss_pred             CCCEEEECHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99899956565056599999999986997223338999866887667437989999888999876566889999999999


Q ss_pred             HHHCCC--CEEEEECCCCHHHHHHHHHCCCCEEEEC-HHHHCCCCHH-HHHHHHHHHHHHH
Q ss_conf             431386--5269815899889999996799899974-2663789989-9999999999978
Q gi|254780975|r  164 LIGKRS--ISLEVDGGVTSRNIKSLVQAGADLLVVG-SSFFNQKGEI-SYAKRLNDLKKSA  220 (224)
Q Consensus       164 ~~~~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~G-saif~~~d~~-~~~~~l~~l~~~a  220 (224)
                      ++++++  +.|+||||||.+|++.+.++|||++|+| |+||++++.. +..+.++.-.++|
T Consensus       160 ~~~~~~~~~~I~VDGGI~~~~i~~~~~aGAd~~V~GssaiF~~~~~i~~~~~~l~~~~~~~  220 (227)
T PRK09722        160 WREREGLEYEIEVDGSCNQKTYEKLMAAGADVFIVGTSGLFNHAENIDEAWDIMTAQILAA  220 (227)
T ss_pred             HHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9982599826999898889999999986999999774897489999999999999999998


No 9  
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=100.00  E-value=0  Score=480.23  Aligned_cols=211  Identities=40%  Similarity=0.698  Sum_probs=197.6

Q ss_pred             CCEEECHHHHCCCHHHHHHHHHHHHH---CCCCEEEEEEECCEECCCCCCCHHHHHHHHHCC-CCEEEEEEEEEECCHHH
Q ss_conf             98188170632588999999999996---599899997342634584341789999864125-64168567885120336
Q gi|254780975|r    3 PSIQIVPSILAADFSRLGEEISNITK---AGAKQIHFDVMDGCFVPNISFGADVIRSLRSYS-DSVFDCHLMISSIDSHI   78 (224)
Q Consensus         3 k~~~IspSil~~d~~~l~~~i~~l~~---~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t-~~~~dvHLMv~~P~~~i   78 (224)
                      |++ |||||+|||+++|+++++++++   +|+||+|+|||||+||||+||||++++++|+++ +.|+||||||++|++|+
T Consensus         1 ~~~-I~pSil~aD~~~L~~ei~~~~~~~~~g~d~lHiDImDG~FVpN~t~g~~~v~~ir~~~~~~~lDvHLMv~~P~~~i   79 (224)
T PTZ00170          1 KPI-IAPSILAADFTKLLDESQDVLSPEGGGADWLHVDVMDGHFVPNLSFGPPVVSSLRKHLPNTFLDVHLMVSDPERWV   79 (224)
T ss_pred             CCE-EEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHH
T ss_conf             976-6487766469999999999986340599789994405850776574978999999717998646899863888879


Q ss_pred             HHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH--CCEEEEEEEECCCCCCCCCCHHHH
Q ss_conf             764047760799970664215899986776498259985233344789988620--140289983067765332201357
Q gi|254780975|r   79 NIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDE--IDMILIMTVNPGFGGQQLIESTIP  156 (224)
Q Consensus        79 ~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~--~D~vliM~V~PG~~Gq~f~~~~l~  156 (224)
                      ++|.++|+|+|+||+|++.++.+++++||++|+++||||||+||++.+++|++.  +|+||+|||+|||+||+|++.+++
T Consensus        80 ~~~~~~gad~I~~H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T~i~~l~~~l~~~~iD~VLlMsV~PGf~GQ~Fi~~~l~  159 (224)
T PTZ00170         80 DSFAKAGASQFTFHIEATEDPKAVARKIRAAGMQVGVALKPKTPAEELFPLIDAGLVDMVLVMTVEPGFGGQSFMHDMMP  159 (224)
T ss_pred             HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf             99986289679985001339999999999714764556079998799999971144578999855699876214588999


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf             789986543138652698158998899999967998999742663789989999999999
Q gi|254780975|r  157 KIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       157 kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l  216 (224)
                      ||+++|+.++  ++.|+||||||.+|++.+.++|||++|+||++|+++|+.+++++|++-
T Consensus       160 KI~~lr~~~~--~~~I~VDGGIn~~ti~~l~~aGad~~V~GSaiF~~~d~~~~i~~lr~~  217 (224)
T PTZ00170        160 KVRQLRQRYP--HLNIQVDGGINPDTIDLAAEAGANVIVAGTSIFKANDRKESIETLRRS  217 (224)
T ss_pred             HHHHHHHCCC--CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
T ss_conf             9999985489--975999589998999999986999999785886799999999999999


No 10 
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=100.00  E-value=0  Score=477.67  Aligned_cols=208  Identities=48%  Similarity=0.839  Sum_probs=201.8

Q ss_pred             EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf             88170632588999999999996599899997342634584341789999864125641685678851203367640477
Q gi|254780975|r    6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAG   85 (224)
Q Consensus         6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g   85 (224)
                      +|||||+|+|+.+|++++++++++|+||+|+|||||+||||+|||++.+++||++|++|+||||||++|++|+++|.++|
T Consensus         1 ~IspSil~ad~~~l~~~i~~~~~~g~d~lHiDimDG~Fvpn~t~g~~~v~~i~~~t~~~~DvHLMv~~P~~~i~~~~~~g   80 (211)
T cd00429           1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAG   80 (211)
T ss_pred             CEEHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHC
T ss_conf             91573531799999999999997699989995757972786675989999998757997058998718877699999709


Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             60799970664215899986776498259985233344789988620140289983067765332201357789986543
Q gi|254780975|r   86 CDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI  165 (224)
Q Consensus        86 ~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~  165 (224)
                      +|+|+||+|++.++.+++++||++|+++|||+||+||++.+++|++.+|+||+|||+|||+||+|++++++||+++|+++
T Consensus        81 ~d~I~~H~E~~~~~~~~i~~ik~~g~~~Glal~p~T~~~~l~~~l~~~D~vliMtV~PGf~GQ~f~~~~~~ki~~l~~~~  160 (211)
T cd00429          81 ADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELI  160 (211)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             98899864322089999999997398723575489998999999975152279874688788754567999999999999


Q ss_pred             HCC--CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf             138--652698158998899999967998999742663789989999999
Q gi|254780975|r  166 GKR--SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL  213 (224)
Q Consensus       166 ~~~--~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l  213 (224)
                      ++.  ++.|+||||||.+|++++.++|||++|+||++|+++|+.++++++
T Consensus       161 ~~~~~~~~I~vDGGI~~~~i~~l~~~Gad~~V~GS~iF~~~d~~~~i~~l  210 (211)
T cd00429         161 PENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL  210 (211)
T ss_pred             HHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
T ss_conf             86499859999678598999999985999999793775899999999971


No 11 
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=100.00  E-value=0  Score=479.09  Aligned_cols=199  Identities=46%  Similarity=0.827  Sum_probs=195.0

Q ss_pred             EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf             88170632588999999999996599899997342634584341789999864125641685678851203367640477
Q gi|254780975|r    6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAG   85 (224)
Q Consensus         6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g   85 (224)
                      ||||||+|+|+++|++++++++++|+||+|+|||||+||||+|||+++++++|++|++|+||||||++|++|+++|.++|
T Consensus         1 kIspSil~ad~~~l~~~i~~l~~~g~d~iHiDimDG~FVpn~t~g~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~~g   80 (201)
T pfam00834         1 KIAPSLLSADFAHLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTELPLDVHLMVEEPDRIIPDFAEAG   80 (201)
T ss_pred             CEEHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHCC
T ss_conf             91565741689999999999997699989982767972775555877999998638996389999837766399998739


Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             60799970664215899986776498259985233344789988620140289983067765332201357789986543
Q gi|254780975|r   86 CDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI  165 (224)
Q Consensus        86 ~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~  165 (224)
                      +|+|+||+|+++++.+++++||++|+++||||||+||++.+++|++++|+||+|||+|||+||+|++.+++||+++|+++
T Consensus        81 ~d~i~~H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T~~~~l~~~l~~iD~VLvMtV~PGf~GQ~f~~~~l~KI~~lr~~~  160 (201)
T pfam00834        81 ADIISFHAEASDHPHRTIQLIKEAGAKAGLVLNPATPLDAIEYLLDDLDLVLLMSVNPGFGGQSFIPSVLPKIRKVRKMI  160 (201)
T ss_pred             CCEEEECHHHHHCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             98899754441379999999986497268885699860288876742798999886689887645677999999999999


Q ss_pred             HCCC--CEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             1386--52698158998899999967998999742663789
Q gi|254780975|r  166 GKRS--ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       166 ~~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      ++++  +.|+||||||.+|++.+.++|||++|+||++|++|
T Consensus       161 ~~~~~~~~I~vDGGIn~~ti~~l~~~Gad~~V~GSaiF~sp  201 (201)
T pfam00834       161 DEGGLDTLIEVDGGVNLDNIPQIAEAGADVLVAGSAVFGAP  201 (201)
T ss_pred             HHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCEECCCC
T ss_conf             82699807999898889999999987999999780024598


No 12 
>KOG3111 consensus
Probab=100.00  E-value=0  Score=438.53  Aligned_cols=217  Identities=38%  Similarity=0.670  Sum_probs=205.3

Q ss_pred             CCCCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCE--EEEEEEEEECCHHH
Q ss_conf             9798188170632588999999999996599899997342634584341789999864125641--68567885120336
Q gi|254780975|r    1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSV--FDCHLMISSIDSHI   78 (224)
Q Consensus         1 M~k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~--~dvHLMv~~P~~~i   78 (224)
                      |.-+.+|+||||++|+.||+.|.+++..+|+||||+|+||||||||+|||+..++++|+.+..+  +|+||||.+|++|+
T Consensus         1 ~~~~~~I~pSIL~~dfanL~~E~~~~~~~GadwlHlDVMDg~FVpNiT~G~pvV~slr~~~~~~~ffD~HmMV~~Peq~v   80 (224)
T KOG3111           1 MMVKPKIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWV   80 (224)
T ss_pred             CCCCCEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHHH
T ss_conf             98676325366513067899999999974987587860147104774336188999985258885236787646988876


Q ss_pred             HHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf             76404776079997066421589998677649825998523334478998862014028998306776533220135778
Q gi|254780975|r   79 NIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKI  158 (224)
Q Consensus        79 ~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI  158 (224)
                      ++++++|++.+|||+|++.++.+++++||+.|+++|+||+|+||++.++++++.+|++|+|||+|||+||+|.|+++.|+
T Consensus        81 ~~~a~agas~~tfH~E~~q~~~~lv~~ir~~gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV  160 (224)
T KOG3111          81 DQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKV  160 (224)
T ss_pred             HHHHHCCCCEEEEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             79986477569998643257899999999749756687489995899997641025799998548975045789998999


Q ss_pred             HHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             9986543138652698158998899999967998999742663789989999999999997
Q gi|254780975|r  159 RQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKS  219 (224)
Q Consensus       159 ~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~~  219 (224)
                      +.+|+.++  +..|+||||+..+|+..+.++|||.+|+||++|++.|+.+.++-|++-...
T Consensus       161 ~~lR~kyp--~l~ieVDGGv~p~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~  219 (224)
T KOG3111         161 EWLREKYP--NLDIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEK  219 (224)
T ss_pred             HHHHHHCC--CCEEEECCCCCCCHHHHHHHCCCCEEEECCEEECCCCHHHHHHHHHHHHHH
T ss_conf             99998689--843885488682137799875888798633345279989999999999866


No 13 
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.68  E-value=1e-14  Score=114.31  Aligned_cols=196  Identities=18%  Similarity=0.284  Sum_probs=145.4

Q ss_pred             HCCCHHHHHHHHHHHHHC--CCCEEEEEEECCEECCC-CCCCHHHHHHHHH-CCCCEEEEEEEEEE-CCHHHHHHCCCCC
Q ss_conf             325889999999999965--99899997342634584-3417899998641-25641685678851-2033676404776
Q gi|254780975|r   12 LAADFSRLGEEISNITKA--GAKQIHFDVMDGCFVPN-ISFGADVIRSLRS-YSDSVFDCHLMISS-IDSHINIIADAGC   86 (224)
Q Consensus        12 l~~d~~~l~~~i~~l~~~--~~d~iHiDImDg~fvpn-~~~~~~~i~~i~~-~t~~~~dvHLMv~~-P~~~i~~~~~~g~   86 (224)
                      ++.|..++++.++.+++.  +++|+-+    |.  |- .+.|++.++.+|+ .++.++=+.|-+-| +..-.+...++|+
T Consensus         4 vALD~~~~~~A~~i~~~~~~~v~~ikv----G~--~L~~~~G~~~v~~lk~~~p~~~I~~DlK~~D~g~~~~~~~~~~Ga   77 (206)
T TIGR03128         4 LALDLLDIEEALELAEKVADYVDIIEI----GT--PLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGA   77 (206)
T ss_pred             EEECCCCHHHHHHHHHHHCCCCCEEEE----CC--HHHHHHCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHCCC
T ss_conf             995799999999999970355629998----96--999976899999999878999799995044743899999997289


Q ss_pred             CEEEEECCCCCC-HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             079997066421-5899986776498259985233344789988620140289983067765332201357789986543
Q gi|254780975|r   87 DIITFHPESSPH-IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI  165 (224)
Q Consensus        87 d~i~~H~E~~~~-~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~  165 (224)
                      |++|+|.-+... +....+..++.|.+..+.+...+.+....+.+..+. +-.+++..|+..|.......+.+..+++..
T Consensus        78 d~itVh~~~~~~ti~~a~~~a~~~~~~v~vdl~~~~~~~~~a~~~~~~g-~d~v~~h~g~d~~~~~~~~~~~~~~~~~~~  156 (206)
T TIGR03128        78 DIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELG-ADYIGVHTGLDEQAKGQNPFEDLQTILKLV  156 (206)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCC-CCEEEEECCCCHHHCCCCCHHHHHHHHHCC
T ss_conf             8999943489799999999999739979999747898899999999758-988995025004432679889999998625


Q ss_pred             HCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf             138652698158998899999967998999742663789989999999999
Q gi|254780975|r  166 GKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       166 ~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l  216 (224)
                      .  +..+.++||++.+|.+.+.++|||.+|+|++|++++||.+++++|++.
T Consensus       157 ~--~~~i~v~gGi~~~t~~~ai~~Gad~vVVGR~It~A~dP~~aa~~i~e~  205 (206)
T TIGR03128       157 K--EARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL  205 (206)
T ss_pred             C--CCCEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             7--873636798683569999866999999896124799999999999974


No 14 
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.66  E-value=5.7e-14  Score=109.60  Aligned_cols=197  Identities=23%  Similarity=0.374  Sum_probs=154.1

Q ss_pred             HCCCHHHHHHHHHHHHH---CCCCEEEEEEECCEECCCC-CCCHHHHHHHHH-CCCCEEEEEEEEEECCHH-HHHHCCCC
Q ss_conf             32588999999999996---5998999973426345843-417899998641-256416856788512033-67640477
Q gi|254780975|r   12 LAADFSRLGEEISNITK---AGAKQIHFDVMDGCFVPNI-SFGADVIRSLRS-YSDSVFDCHLMISSIDSH-INIIADAG   85 (224)
Q Consensus        12 l~~d~~~l~~~i~~l~~---~~~d~iHiDImDg~fvpn~-~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~-i~~~~~~g   85 (224)
                      ++.|+.+|.+.++...+   .++||+.+    |+  |-+ +.|.+-++.+|+ +++.++=+.|-+.+--.| .+...++|
T Consensus         8 vALD~~~l~~A~~ia~e~v~~~~diiE~----GT--PLIk~eG~~aV~~lr~~fP~~~ivAD~KtmDaG~~Ea~~A~~AG   81 (429)
T PRK07028          8 VALDLLELDRAIEIAKEAVAGGADWIEA----GT--PLIKSEGMNAIRTLRKNFPDLTIVADMKTMDTGAMEVEMAAKAG   81 (429)
T ss_pred             EEECCCCHHHHHHHHHHHHHCCCCEEEE----CC--HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHCC
T ss_conf             6542488899999999874158759991----76--88886418999999987899869887640455088999998769


Q ss_pred             CCEEEEECCCCCC-HHHHHHHHHHCCCEEEEE-EECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf             6079997066421-589998677649825998-523334478998862-0140289983067765332201357789986
Q gi|254780975|r   86 CDIITFHPESSPH-IRRSLRTIHAMGKKTGVA-INPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAK  162 (224)
Q Consensus        86 ~d~i~~H~E~~~~-~~~~i~~i~~~g~k~Gia-i~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~  162 (224)
                      +|++|+---+... +...++..+++|+++-+- ||-..+.+..+.+-. -+|+|.+.+   |..-|.--...++-+++++
T Consensus        82 ADivtVlG~a~d~TI~~aV~aA~k~G~~v~vDlI~v~d~~~ra~el~~lGvd~I~vH~---G~D~Q~~g~~p~~~l~~v~  158 (429)
T PRK07028         82 ADVVCILGVADDSTIADAVRAARKYGVLVMADLINVPDPVKRAVELEELGVDIINVHV---GIDQQMLGKDPLELLKKVS  158 (429)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEE---EECHHHCCCCHHHHHHHHH
T ss_conf             9889994578836999999999970988999855899889999999970998899976---2335531798499999999


Q ss_pred             HHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             5431386526981589988999999679989997426637899899999999999978
Q gi|254780975|r  163 ALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSA  220 (224)
Q Consensus       163 ~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~~a  220 (224)
                      +.   .+..+.|-||||.+|++.+.++|||++|+|++|.+++||.++++++++-..+.
T Consensus       159 ~~---~~~~vAVAGGi~~~t~~~~v~~GAdIvIVGgaI~~a~dp~~aAr~ir~ai~~~  213 (429)
T PRK07028        159 EE---VSIPIAAAGGLDAETAVKAVEAGADIVIVGGNIYKSADVTGAARDIREALDSP  213 (429)
T ss_pred             HH---CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             75---59718996687877699999759989998940057999799999999997376


No 15 
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.62  E-value=8.4e-14  Score=108.52  Aligned_cols=197  Identities=17%  Similarity=0.280  Sum_probs=149.2

Q ss_pred             HCCCHHHHHHHHHHHHHCCCCEEEEEEEC-CEECCC-CCCCHHHHHHHHH-CCCCEEEEEEEEEECCH-HHHHHCCCCCC
Q ss_conf             32588999999999996599899997342-634584-3417899998641-25641685678851203-36764047760
Q gi|254780975|r   12 LAADFSRLGEEISNITKAGAKQIHFDVMD-GCFVPN-ISFGADVIRSLRS-YSDSVFDCHLMISSIDS-HINIIADAGCD   87 (224)
Q Consensus        12 l~~d~~~l~~~i~~l~~~~~d~iHiDImD-g~fvpn-~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~-~i~~~~~~g~d   87 (224)
                      ++.|..++++.++.+++. .++  +|+.- |.  |= .+.|++.++.+|+ +++.++=+.|-+.|--+ -.+...++|+|
T Consensus         8 vALD~~~l~~Al~ia~~~-~~~--vdiiEvGt--pLi~~~G~~~V~~lr~~~p~k~I~aDlK~~D~g~~ea~~a~~aGAd   82 (216)
T PRK13306          8 VALDNQDLDSALEDAKKV-AEE--VDIIEVGT--ILCLAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGAD   82 (216)
T ss_pred             EEECCCCHHHHHHHHHHH-HCC--CCEEEECC--HHHHHHCHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHCCCC
T ss_conf             986789999999999972-322--89999685--9999858999999998789997999753236538999999972898


Q ss_pred             EEEEECCCCCC-HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH-CCEEEEE-EEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             79997066421-5899986776498259985233344789988620-1402899-8306776533220135778998654
Q gi|254780975|r   88 IITFHPESSPH-IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDE-IDMILIM-TVNPGFGGQQLIESTIPKIRQAKAL  164 (224)
Q Consensus        88 ~i~~H~E~~~~-~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~-~D~vliM-~V~PG~~Gq~f~~~~l~kI~~l~~~  164 (224)
                      ++++|.-+... +...++..++.|.++-+-+-.....+....+.+. ++.+.+. +.+-+.+|+.+.+.-+++++++.. 
T Consensus        83 ~vtV~g~a~~~Ti~~~~~~A~~~g~~v~vdl~~~~~~e~a~~~~~lgv~~~i~H~~~D~~~~g~~~~~~~~~~ik~l~~-  161 (216)
T PRK13306         83 WVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDAGIQQVIYHRSRDAELAGVAWGEKDLNKVKKLSD-  161 (216)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCHHHHHHHHHHHC-
T ss_conf             8999566897999999999998098369997378778889999976998788760322442467888778999999763-


Q ss_pred             HHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf             31386526981589988999999679989997426637899899999999999
Q gi|254780975|r  165 IGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK  217 (224)
Q Consensus       165 ~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~  217 (224)
                         .++.+.|-|||+.++++.+.+.|++++|+|++|.+++||.++++.+++--
T Consensus       162 ---~~~~vaVaGGI~~~~~~~~~~~~~~ivIVGraIt~a~dP~~aA~~i~~~I  211 (216)
T PRK13306        162 ---MGFKVSVTGGIVPEDLKLFKGIPIKTFIAGRAIRGAKDPAEAARAFKDEI  211 (216)
T ss_pred             ---CCCEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             ---69829985998989999986279989998852358999999999999999


No 16 
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.59  E-value=3.3e-13  Score=104.69  Aligned_cols=197  Identities=13%  Similarity=0.223  Sum_probs=151.0

Q ss_pred             HCCCHHHHHHHHHHHHHCCCCEEEEEEEC-CEECCC-CCCCHHHHHHHHH-CCCCEEEEEEEEEECCHH-HHHHCCCCCC
Q ss_conf             32588999999999996599899997342-634584-3417899998641-256416856788512033-6764047760
Q gi|254780975|r   12 LAADFSRLGEEISNITKAGAKQIHFDVMD-GCFVPN-ISFGADVIRSLRS-YSDSVFDCHLMISSIDSH-INIIADAGCD   87 (224)
Q Consensus        12 l~~d~~~l~~~i~~l~~~~~d~iHiDImD-g~fvpn-~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~-i~~~~~~g~d   87 (224)
                      ++.|..+|++.++.+++. .+  |+||.- |+  |= ..+|.+.++.+|+ +++..+=..+-+.|--.| .+...++|+|
T Consensus         8 vALD~~~l~~A~~~a~~v-~~--~vDIIE~GT--pLik~~G~~aV~~lr~~~P~~~IvAD~Kt~DaG~~Ea~~a~~aGAD   82 (220)
T PRK13305          8 LALDHTSLEAAQRDVALL-QD--HVDIVEAGT--ILCLNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGAN   82 (220)
T ss_pred             EEECCCCHHHHHHHHHHH-HC--CCCEEEECC--HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHCCCC
T ss_conf             655679999999999983-04--688999087--9999842999999998789987998754526259999999865998


Q ss_pred             EEEEECCCCCC-HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEE-EECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             79997066421-589998677649825998523334478998862-014028998-306776533220135778998654
Q gi|254780975|r   88 IITFHPESSPH-IRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMT-VNPGFGGQQLIESTIPKIRQAKAL  164 (224)
Q Consensus        88 ~i~~H~E~~~~-~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~-V~PG~~Gq~f~~~~l~kI~~l~~~  164 (224)
                      ++|+-.-+... +...++..+++|.+.-+-+-...+++....+.. .+|++.+.. .+--.+|+.+-+..+.+++.+.+ 
T Consensus        83 ~vTVlg~A~~~TI~~~~~~a~~~g~~v~vDli~~~~~~~ak~~~~lgv~~v~~H~g~D~q~~g~~~~~~~l~~~k~~~~-  161 (220)
T PRK13305         83 WMTIICAAPLATVEKGHAVAQSCGGEIQIELFGNWTLDDARDWHRIGVRQAIYHRGRDAQASGQQWGEADLARMKALSD-  161 (220)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCHHHHHHHHHHHH-
T ss_conf             8999566897999999999998099899984589987899999986998899983336765189863101999998760-


Q ss_pred             HHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf             31386526981589988999999679989997426637899899999999999
Q gi|254780975|r  165 IGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK  217 (224)
Q Consensus       165 ~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~  217 (224)
                         .++.+.|-||||.+|++.+...|+|++|+||+|-+++||.++++.+++--
T Consensus       162 ---~~~~vaVAGGI~~~~i~~~~~~~~~ivIvGraIt~A~dP~~aA~~~~~~I  211 (220)
T PRK13305        162 ---IGLELSITGGITPADLPLFKDIRVKAFIAGRALAGAANPAQVAGDFHAQI  211 (220)
T ss_pred             ---CCCEEEEECCCCHHHHHHHHCCCCCEEEECHHHCCCCCHHHHHHHHHHHH
T ss_conf             ---69649998887888999997169989998936518999999999999999


No 17 
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=99.52  E-value=2.7e-12  Score=98.93  Aligned_cols=197  Identities=21%  Similarity=0.357  Sum_probs=151.0

Q ss_pred             HCCCHHHHHHHHHHHHHCCCCEEEEEEEC-CEECCC-CCCCHHHHHHHHH-CCCCEEEEEEEEEECCHH-HHHHCCCCCC
Q ss_conf             32588999999999996599899997342-634584-3417899998641-256416856788512033-6764047760
Q gi|254780975|r   12 LAADFSRLGEEISNITKAGAKQIHFDVMD-GCFVPN-ISFGADVIRSLRS-YSDSVFDCHLMISSIDSH-INIIADAGCD   87 (224)
Q Consensus        12 l~~d~~~l~~~i~~l~~~~~d~iHiDImD-g~fvpn-~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~-i~~~~~~g~d   87 (224)
                      .+.|..+|++.++.+++. .++  +||.- |+  |= ..+|.+-++.||+ +++.++=+.+-+.+--.+ .+...++|+|
T Consensus         8 vALD~~~l~~Ai~~a~~v-~~~--~diiEvGT--pLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd   82 (217)
T COG0269           8 VALDLLDLEEAIEIAEEV-ADY--VDIIEVGT--PLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGAD   82 (217)
T ss_pred             EEECCCCHHHHHHHHHHH-HHC--CEEEEECC--HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHCCCC
T ss_conf             666557799999999971-221--32998076--9999851799999998789986886203224048999999973898


Q ss_pred             EEEEECCCCC-CHHHHHHHHHHCCCEEEEEE-ECCCCHHHHHHHH-HHCCEEEEEE-EECCCCCCCCCCHHHHHHHHHHH
Q ss_conf             7999706642-15899986776498259985-2333447899886-2014028998-30677653322013577899865
Q gi|254780975|r   88 IITFHPESSP-HIRRSLRTIHAMGKKTGVAI-NPETPVAILEDVI-DEIDMILIMT-VNPGFGGQQLIESTIPKIRQAKA  163 (224)
Q Consensus        88 ~i~~H~E~~~-~~~~~i~~i~~~g~k~Giai-~p~T~~~~i~~~l-~~~D~vliM~-V~PG~~Gq~f~~~~l~kI~~l~~  163 (224)
                      ++|+-.-+.. -+...++..+++|...-+-+ +-.|+.+....+- --+|++.+.. ++-=-.|+.+-...+.+++++.+
T Consensus        83 ~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~  162 (217)
T COG0269          83 WVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSD  162 (217)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCHHHHHHHHHHHC
T ss_conf             79998048889999999999983986999851689999999999971897899970434765089941778999998623


Q ss_pred             HHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf             431386526981589988999999679989997426637899899999999999
Q gi|254780975|r  164 LIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK  217 (224)
Q Consensus       164 ~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~  217 (224)
                      +    ++.+.|-|||+.++++.+...|+++||+|++|-+++||.++++++++..
T Consensus       163 ~----g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i  212 (217)
T COG0269         163 L----GAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEI  212 (217)
T ss_pred             C----CCEEEEECCCCHHHHHHHHCCCCCEEEECCHHCCCCCHHHHHHHHHHHH
T ss_conf             6----8359986687887889986489979998822148999799999999986


No 18 
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=99.48  E-value=1.5e-11  Score=94.13  Aligned_cols=192  Identities=23%  Similarity=0.358  Sum_probs=142.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCC-CCCHHHHHHHHH-CCCCEEEEEEEEEECCHH-HHHHCCCCCCEE
Q ss_conf             25889999999999965998999973426345843-417899998641-256416856788512033-676404776079
Q gi|254780975|r   13 AADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNI-SFGADVIRSLRS-YSDSVFDCHLMISSIDSH-INIIADAGCDII   89 (224)
Q Consensus        13 ~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~-~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~-i~~~~~~g~d~i   89 (224)
                      --|+.++++-++.+-+.  |  |+=|-=|+  |-+ .+|.+.++.||+ +++..+=..|-+.|--.+ .+...++|+|++
T Consensus       181 ~~~~~~~~~~~~~~p~~--d--~~IIEaGT--PLIK~~G~~aV~~iRe~fPd~~IvADlKTmDaG~lEa~mAa~AGADiv  254 (392)
T PRK13307        181 LPDLEEVERVLSELPQS--D--HIIIEAGT--PLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAV  254 (392)
T ss_pred             CCCHHHHHHHHHHCCCC--C--EEEEEECC--HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             88889999999718865--6--28999085--888986789999999878998899854203542688888887599889


Q ss_pred             EEECCCCCC-HHHHHHHHHHCCCEEEEE-EECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             997066421-589998677649825998-523334478998862014028998306776533220135778998654313
Q gi|254780975|r   90 TFHPESSPH-IRRSLRTIHAMGKKTGVA-INPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK  167 (224)
Q Consensus        90 ~~H~E~~~~-~~~~i~~i~~~g~k~Gia-i~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~  167 (224)
                      ++---+... ++..++..+++|++.-+- ||-.-|.+..+.+--..|+|.+.+   |-.-|.- ...+..+.+.++..  
T Consensus       255 tVlG~A~~sTI~~aikeA~k~G~~v~vDlInV~dpv~ra~eLklg~DiI~lH~---giD~Q~~-~~~~~~l~~i~~~~--  328 (392)
T PRK13307        255 VISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELHR---GIDEEGT-EHAWGNIPEIKKAA--  328 (392)
T ss_pred             EEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEE---CCCHHHC-CCCHHHHHHHHHHC--
T ss_conf             99567987899999999997097999983478888999998444698899985---4126403-68745699999742--


Q ss_pred             CCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf             8652698158998899999967998999742663789989999999999
Q gi|254780975|r  168 RSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       168 ~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l  216 (224)
                      .+..+.|-||||.+|++.+.++|+|++|+||+|.+++||..+++.+.+-
T Consensus       329 ~~~~VAVAGGI~~et~~~~~~~gadIvIVG~aIT~S~Dp~~AAreil~~  377 (392)
T PRK13307        329 GKILVAVAGGVRVEKVEEALKAGADILVVGRAITKSKDVRRAAEQFLNK  377 (392)
T ss_pred             CCEEEEEECCCCHHHHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHH
T ss_conf             6805999778888889999846998999891213789989999999987


No 19 
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=99.38  E-value=2.4e-12  Score=99.20  Aligned_cols=201  Identities=21%  Similarity=0.351  Sum_probs=133.6

Q ss_pred             CCCCEEECHHHHCCCHHHHHHHHHHHHHCC--CCEEEEEEECCEECCC-CCCCHHHHHHHHHCCCCEEEEEEEEE--ECC
Q ss_conf             979818817063258899999999999659--9899997342634584-34178999986412564168567885--120
Q gi|254780975|r    1 MTPSIQIVPSILAADFSRLGEEISNITKAG--AKQIHFDVMDGCFVPN-ISFGADVIRSLRSYSDSVFDCHLMIS--SID   75 (224)
Q Consensus         1 M~k~~~IspSil~~d~~~l~~~i~~l~~~~--~d~iHiDImDg~fvpn-~~~~~~~i~~i~~~t~~~~dvHLMv~--~P~   75 (224)
                      |+++ +|   +++.|..++++.++.+++.+  ++.+.+-     . |- ..+|++.++.+++...+.+|..+|=-  ...
T Consensus         1 mk~~-~l---~vALD~~~~~~a~~l~~~l~~~i~~iKiG-----~-~l~~~~G~~~i~~l~~~~~If~DlK~~DIpnTv~   70 (215)
T PRK13813          1 MKDS-RI---ILALDVYDREEALKIAEELSDYVDAIKVN-----W-PLILASGLSIIRELKQYTPVIADLKVADIPNTNR   70 (215)
T ss_pred             CCCC-CE---EEEECCCCHHHHHHHHHHHCCCCEEEEEC-----H-HHHHHCCHHHHHHHHHHCCEEEEEEECCCHHHHH
T ss_conf             9988-87---99961799999999999847756099989-----7-9987549999999998589079986244637999


Q ss_pred             HHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHHCCEEEEEEEECCCCCCCCCC
Q ss_conf             33676404776079997066421-589998677649825998523334--478998862014028998306776533220
Q gi|254780975|r   76 SHINIIADAGCDIITFHPESSPH-IRRSLRTIHAMGKKTGVAINPETP--VAILEDVIDEIDMILIMTVNPGFGGQQLIE  152 (224)
Q Consensus        76 ~~i~~~~~~g~d~i~~H~E~~~~-~~~~i~~i~~~g~k~Giai~p~T~--~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~  152 (224)
                      .+++.+.++|++++|+|.=+..+ +....+..++.+.++.+......+  .+.++++...   +.-++.+.|..|+--..
T Consensus        71 ~~~~~~~~~ga~~vTvh~~~g~~~i~~a~~~~~~~~~~v~~v~~ls~~g~~~~~~~~~~~---~~~~a~~~g~~Gvv~~~  147 (215)
T PRK13813         71 LICEKVFEAGADGIIVHGFTGRDSLKAVVEAAKRYGKKVFVVVEMSHPGALEFINPVADK---LAKLANEAGAFGVVAPA  147 (215)
T ss_pred             HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH---HHHHHHHCCCCEEEECC
T ss_conf             999999962999999925688999999999876419845999984687746569999999---99999986999899789


Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf             135778998654313865269815899--8899999967998999742663789989999999999
Q gi|254780975|r  153 STIPKIRQAKALIGKRSISLEVDGGVT--SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       153 ~~l~kI~~l~~~~~~~~~~I~vDGGvn--~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l  216 (224)
                      ...+.++.+|+..++ ++.+ +=.||+  ..+.....++|+|.+|+|++|++++||.++++++++-
T Consensus       148 ~~~~~~~~ir~~~~~-~~~i-vtPGI~~~~~~~~~ai~~Gad~iVVGR~It~A~dP~~aa~~i~~~  211 (215)
T PRK13813        148 TRPERVRAIRRRLGD-DLKI-ISPGIGAQGGKASDAIKAGADYVIVGRSIYNAADPREAAKKIREE  211 (215)
T ss_pred             CCHHHHHHHHHHCCC-CCEE-ECCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             887999999986288-7469-857616799998999981899999894335899999999999998


No 20 
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.36  E-value=3.5e-11  Score=91.78  Aligned_cols=190  Identities=21%  Similarity=0.348  Sum_probs=124.9

Q ss_pred             HCCCHHHHHHHHHHHHHCC--CCEEEEEEECCEECCC-CCCCHHHHHHHHH-CCCCEEEEEEEEEE-CCHHHHHHCCCCC
Q ss_conf             3258899999999999659--9899997342634584-3417899998641-25641685678851-2033676404776
Q gi|254780975|r   12 LAADFSRLGEEISNITKAG--AKQIHFDVMDGCFVPN-ISFGADVIRSLRS-YSDSVFDCHLMISS-IDSHINIIADAGC   86 (224)
Q Consensus        12 l~~d~~~l~~~i~~l~~~~--~d~iHiDImDg~fvpn-~~~~~~~i~~i~~-~t~~~~dvHLMv~~-P~~~i~~~~~~g~   86 (224)
                      ++.|..++++.++.+++..  ++|+-+    |.  |- ++.|+..++.||+ ++++++=..|-+-| |....+...++|+
T Consensus         5 vALD~~~~~~A~~l~~~l~~~v~~iKv----G~--~L~~~~G~~~v~~lk~~~p~~~IflDlK~~Di~~tva~~~~~~Ga   78 (202)
T cd04726           5 VALDLLDLEEALELAKKVPDGVDIIEA----GT--PLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGA   78 (202)
T ss_pred             EEECCCCHHHHHHHHHHHCCCCCEEEE----CH--HHHHHHCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHCC
T ss_conf             985899999999999970354879998----95--999976899999999878999799986533616799999997079


Q ss_pred             CEEEEECCCCCC-HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEE-EEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf             079997066421-589998677649825998523334478998862-0140289-9830677653322013577899865
Q gi|254780975|r   87 DIITFHPESSPH-IRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILI-MTVNPGFGGQQLIESTIPKIRQAKA  163 (224)
Q Consensus        87 d~i~~H~E~~~~-~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vli-M~V~PG~~Gq~f~~~~l~kI~~l~~  163 (224)
                      |++++|.-+..+ +....+..++.+.+..+.+--....+......+ .++.+.+ .+.+.+..|....   ...++++++
T Consensus        79 d~~tvh~~~g~~~~~~a~~~a~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~~---~~~~~~i~~  155 (202)
T cd04726          79 DIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWP---EDDLKKVKK  155 (202)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCH---HHHHHHHHH
T ss_conf             88999666898999999998863696799998368999999988856805889998787775289970---899999986


Q ss_pred             HHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf             43138652698158998899999967998999742663789989999999
Q gi|254780975|r  164 LIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL  213 (224)
Q Consensus       164 ~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l  213 (224)
                      .   .+..+.|-|||+.+|.+...++|+|.+|+|++|.+++||.++++.+
T Consensus       156 ~---~~~~i~VtpGIr~~t~~~a~~~gad~iVVGR~It~A~dP~~AA~~f  202 (202)
T cd04726         156 L---LGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAAREF  202 (202)
T ss_pred             H---CCCCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf             2---3996788999885409999975999999898345799989999619


No 21 
>PRK13127 consensus
Probab=99.04  E-value=1.5e-07  Score=68.50  Aligned_cols=206  Identities=20%  Similarity=0.311  Sum_probs=145.3

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC   67 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv   67 (224)
                      +.|=+.+.  |.-...+.+..+.++|+|.+-+.+      .||-..         ..+++  -.+.++++|+.++.|+=+
T Consensus        13 lI~yitaG~P~~e~t~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~pivl   92 (262)
T PRK13127         13 LVPYLVAGDPDPEATLEFVKALVKGGADVIELGIPFSDPVADGPTIQAADVRALSAGMKIDKYFELVKELRVDSSVPLVL   92 (262)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf             89886270899899999999999769999997898888776579999999999976997999999999974569988799


Q ss_pred             EEEEE-------ECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEEE
Q ss_conf             67885-------1203367640477607999706642158999867764982599852333447899886201-402899
Q gi|254780975|r   68 HLMIS-------SIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEI-DMILIM  139 (224)
Q Consensus        68 HLMv~-------~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~-D~vliM  139 (224)
                        |.=       -.++|++.+.++|+|-+.+.==-.+.-.+..+.++++|...-.-+.|.|+-+.+..+.... .+|-++
T Consensus        93 --M~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~a~gFiY~v  170 (262)
T PRK13127         93 --MTYYNPVYRYGVEKFVKKAAEAGVSGLIIPDLPVEEATDLREACKKHGLDLVFLVAPTTPEERLKRIDEASSGFVYLV  170 (262)
T ss_pred             --EECCHHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEE
T ss_conf             --966138876089999999987599769966999789999999998558327998589998999999984389818998


Q ss_pred             EEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHH----CCCCHHHHHHH
Q ss_conf             830677653--322013577899865431386526981589-98899999967998999742663----78998999999
Q gi|254780975|r  140 TVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFF----NQKGEISYAKR  212 (224)
Q Consensus       140 ~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif----~~~d~~~~~~~  212 (224)
                      ++ .|-.|.  .+.+...+.++++|+.   .+.++.|-=|| +.+.++.+.+.|||-+|+||++.    ++.++.+..+.
T Consensus       171 s~-~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~v~~~~~~~aDGvIVGSaiv~~i~~~~~~~~~~~~  246 (262)
T PRK13127        171 SR-LGVTGAREDVEEATFDLLKRARTT---CKNKIAVGFGISKGEHAEELLDAGADGVIVGSALVDIIAEGGDNEEVADR  246 (262)
T ss_pred             EC-CCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEEEECCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCHHHHHHH
T ss_conf             43-555687655528899999999961---79984899334889999999864999999878999999966997899999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780975|r  213 LNDLKK  218 (224)
Q Consensus       213 l~~l~~  218 (224)
                      +.++.+
T Consensus       247 v~~~~~  252 (262)
T PRK13127        247 LEELAR  252 (262)
T ss_pred             HHHHHH
T ss_conf             999999


No 22 
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.02  E-value=1.8e-07  Score=68.04  Aligned_cols=190  Identities=16%  Similarity=0.227  Sum_probs=136.1

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC   67 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv   67 (224)
                      +.|=+.+.  |.....+.++.+.++|+|.+-+.+      .||--.         .++++  -++.++.+|+.++.|+=+
T Consensus        17 li~y~taG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~v~~~r~~~~~Pivl   96 (263)
T CHL00200         17 LIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVI   96 (263)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             68887073898789999999999769999997898888666589999999999977987778999999986067998899


Q ss_pred             EEEE-EEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEE
Q ss_conf             6788-512------033676404776079997066421589998677649825998523334478998862014-02899
Q gi|254780975|r   68 HLMI-SSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIM  139 (224)
Q Consensus        68 HLMv-~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM  139 (224)
                        |. -||      ++|+..+.++|+|=+.+.=---+...+..+.++++|..+-.-+.|.|+-+.++.+....+ +|-++
T Consensus        97 --MtY~N~i~~yG~e~F~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~GFiY~v  174 (263)
T CHL00200         97 --FTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV  174 (263)
T ss_pred             --EEEHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             --862068887388999999998499868747999788899999998558621666478996999999997289808985


Q ss_pred             EEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             830677653--322013577899865431386526981589-988999999679989997426637
Q gi|254780975|r  140 TVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       140 ~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      + ..|-.|.  .+.+..-+.++.+|++   .+.++.|-=|| +.+.++.+.+.|||-+|+||++.+
T Consensus       175 s-~~GvTG~~~~~~~~l~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~~~~aDGvIVGSaiV~  236 (263)
T CHL00200        175 S-TTGVTGLKTELDKKLKKLIETIKKM---TNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQ  236 (263)
T ss_pred             E-CCCCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf             3-3655687544518799999999973---699848735879999999997459999998789999


No 23 
>PRK13122 consensus
Probab=99.01  E-value=1.6e-07  Score=68.36  Aligned_cols=208  Identities=19%  Similarity=0.236  Sum_probs=144.5

Q ss_pred             CCCCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCC
Q ss_conf             97981881706325889999999999965998999973------426345---------84341--78999986412564
Q gi|254780975|r    1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDS   63 (224)
Q Consensus         1 M~k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~   63 (224)
                      |+|  -+.|=++ +|. ++.+.++.+.++|+|.+-+-+      .||--.         .++++  -++.++++|+..+.
T Consensus         1 ~~K--~fipyi~-g~p-d~~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIQ~A~~rAL~~G~~~~~~~~~l~~~r~~~~~   76 (242)
T PRK13122          1 MTK--LFIPYIM-GNK-DLIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQIKC   76 (242)
T ss_pred             CCE--EEEEEEC-CCC-CHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
T ss_conf             972--3777626-899-999999999975999999789888866658999999999997699899999999973136798


Q ss_pred             EEEEEEEEE-E------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-E
Q ss_conf             168567885-1------2033676404776079997066421589998677649825998523334478998862014-0
Q gi|254780975|r   64 VFDCHLMIS-S------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-M  135 (224)
Q Consensus        64 ~~dvHLMv~-~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~  135 (224)
                      |+  =||.= |      .++|++.+.++|+|-+.+.==-.+.-.+..+.++++|...-.-+.|.|+-+.++.+..... +
T Consensus        77 pi--vlM~Y~N~i~~~G~~~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~GF  154 (242)
T PRK13122         77 NY--VLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGF  154 (242)
T ss_pred             CE--EEEEECHHHHHHCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             77--9998516988727999999998769986777899878899999999867986898718999899999999829996


Q ss_pred             EEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHC---CCCHHHH
Q ss_conf             2899830677653--322013577899865431386526981589-988999999679989997426637---8998999
Q gi|254780975|r  136 ILIMTVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFN---QKGEISY  209 (224)
Q Consensus       136 vliM~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~---~~d~~~~  209 (224)
                      |-+.+ ..|-.|.  .+.+..-+.++.+|++   .+.++.|-=|| +.+.++.+.+ +||-+|+||++.+   +....+.
T Consensus       155 iY~vs-~~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~v~~i~~-~ADGvIVGSaivk~i~~~~~e~~  229 (242)
T PRK13122        155 IYTVT-MNATTGQNGAFHPELKRKIESIKAI---ANVPVVAGFGIRTPQHVADIKE-VADGIVIGSEIVKRFKSNTREEI  229 (242)
T ss_pred             EEEEE-CCCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHH-HCCEEEECHHHHHHHHHCCHHHH
T ss_conf             69873-3543576555658899999999972---5998587158799999999981-19999984899999996798999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999997
Q gi|254780975|r  210 AKRLNDLKKS  219 (224)
Q Consensus       210 ~~~l~~l~~~  219 (224)
                      .+.+++++++
T Consensus       230 ~~~i~~l~~a  239 (242)
T PRK13122        230 IKYLQSIQQT  239 (242)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999998


No 24 
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.00  E-value=7.1e-07  Score=64.25  Aligned_cols=203  Identities=18%  Similarity=0.273  Sum_probs=142.8

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC   67 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv   67 (224)
                      +.|=+.+.  |.....+.++.+.++|+|.+-+-+      .||-..         .++++  .++.++.+|+.++.|+=+
T Consensus        11 li~y~taG~P~~e~~~~~~~~l~~~Gad~iEiGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~f~~~~~~r~~~~~pivl   90 (256)
T PRK13111         11 LIPYITAGDPDLETSLEILKALVEAGADIIELGIPFSDPVADGPVIQRASLRALAAGVTLADVLELLREIRAKPTIPIVL   90 (256)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf             89887070899899999999999659999997888788766579999999999977996999999999986068998899


Q ss_pred             EEEEE-E------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEE
Q ss_conf             67885-1------2033676404776079997066421589998677649825998523334478998862014-02899
Q gi|254780975|r   68 HLMIS-S------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIM  139 (224)
Q Consensus        68 HLMv~-~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM  139 (224)
                        |.= |      .++|++.+.++|+|-+.+.==-.+.-.+..+.++++|...-.-+.|.|+-+.++.+....+ +|-+.
T Consensus        91 --M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~gfiY~v  168 (256)
T PRK13111         91 --MTYYNPIFQYGVEAFAADAAEAGVDGLIIPDLPPEEAEEFRAAAKKHGIDLIFLVAPTTTDERLKKIASHASGFVYYV  168 (256)
T ss_pred             --EEECCHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             --850308987099999999997599779816999788899999999759808999699998899999996269859998


Q ss_pred             EEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHC---CCCHHHHHHHH
Q ss_conf             830677653--322013577899865431386526981589-988999999679989997426637---89989999999
Q gi|254780975|r  140 TVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFN---QKGEISYAKRL  213 (224)
Q Consensus       140 ~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~---~~d~~~~~~~l  213 (224)
                      + ..|-.|.  .+.....+.++++|+.   .+.++.|-=|| +.+.++.+.+ +||.+|+||++.+   ..++.+..+.+
T Consensus       169 s-~~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pi~vGFGIs~~e~v~~~~~-~aDGvIVGSaiv~~i~~~~~~~~~~~v  243 (256)
T PRK13111        169 S-RAGVTGARSADAADVADLLARLKAH---TDLPVAVGFGISTPEQAAAIAE-GADGVIVGSALVKIIEAADPEEALAAL  243 (256)
T ss_pred             E-CCCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHC-CCCEEEECHHHHHHHHHCCHHHHHHHH
T ss_conf             5-6776788766628899999999870---6897588528899999999974-599999868999999843977789999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780975|r  214 NDL  216 (224)
Q Consensus       214 ~~l  216 (224)
                      .+.
T Consensus       244 ~~f  246 (256)
T PRK13111        244 AEF  246 (256)
T ss_pred             HHH
T ss_conf             999


No 25 
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.99  E-value=4.1e-08  Score=72.19  Aligned_cols=176  Identities=18%  Similarity=0.192  Sum_probs=121.5

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHH----HHHCCCCCCEEEEECCC
Q ss_conf             99999999659989999734263458434178999986412564168567885120336----76404776079997066
Q gi|254780975|r   20 GEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHI----NIIADAGCDIITFHPES   95 (224)
Q Consensus        20 ~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i----~~~~~~g~d~i~~H~E~   95 (224)
                      .+..+.+.++|.+.+++-................++..|+.|+.|+-+.++...+..+.    ......|+|.+.+|...
T Consensus        15 ~E~a~~~~~aGa~~i~~~~~~~~~~~~~~~~~~~i~~~~~~t~~P~~v~~~~~~~~~~~~~~~~~~~~~g~d~v~i~~~~   94 (200)
T cd04722          15 VELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAV   94 (200)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf             99999998688736886488798246169999999999970799879984205666677599999998399989978999


Q ss_pred             CCC---HHHHHHHHHHC--CCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             421---58999867764--9825998523334478998862014028998306776533220135778998654313865
Q gi|254780975|r   96 SPH---IRRSLRTIHAM--GKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSI  170 (224)
Q Consensus        96 ~~~---~~~~i~~i~~~--g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~  170 (224)
                      ...   ..+.++.+++.  +.++.....+.+......-.-.-+|.|.+-+...+.+++...+.....+.+.+.   ..++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i  171 (200)
T cd04722          95 GYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR---GSKV  171 (200)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH---HCCC
T ss_conf             6543006899999998448964999689999999999998099799970874678887666116899999998---5799


Q ss_pred             EEEEECCCCH-HHHHHHHHCCCCEEEECH
Q ss_conf             2698158998-899999967998999742
Q gi|254780975|r  171 SLEVDGGVTS-RNIKSLVQAGADLLVVGS  198 (224)
Q Consensus       171 ~I~vDGGvn~-~~i~~l~~~Gad~~V~Gs  198 (224)
                      .+.++|||+. +++..+...|||.+++||
T Consensus       172 pvi~~gGi~~~~~~~~~~~~gAdgv~vGs  200 (200)
T cd04722         172 PVIAGGGINDPEDAAEALALGADGVIVGS  200 (200)
T ss_pred             CEEEECCCCCHHHHHHHHHCCCCEEEECC
T ss_conf             98997587999999999985998898188


No 26 
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.96  E-value=2e-07  Score=67.80  Aligned_cols=196  Identities=17%  Similarity=0.162  Sum_probs=125.2

Q ss_pred             ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf             81706325889999999999965998999973426345843417899998641256416856788512033676404776
Q gi|254780975|r    7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC   86 (224)
Q Consensus         7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~   86 (224)
                      |+|.-.+.+  ++.+.++.+.++|++.+|+=.-+..--   . -.+..+++++.+ ...++-|.+++......   ..++
T Consensus        12 IT~~~~~~~--~~~~~~~~~l~~Gv~~vQlR~K~~~~~---~-~~~~a~~l~~i~-~~~~~~liINd~~~lA~---~~~a   81 (210)
T PRK00043         12 ITDSRDSTG--DLLEVVEAALAGGVTLVQLREKGADAR---E-RLELARALKALC-RRYGVPLIVNDRVDLAL---AVGA   81 (210)
T ss_pred             EECCCCCCC--CHHHHHHHHHHCCCCEEEECCCCCCHH---H-HHHHHHHHHHHH-HHHCCEEEECCHHHHHH---HHCC
T ss_conf             919853455--499999999986999999926998999---9-999999999999-98099599768899998---7199


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCC-HHHHHHHHHHHHH
Q ss_conf             079997066421589998677649825998523334478998862014028998306776533220-1357789986543
Q gi|254780975|r   87 DIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIE-STIPKIRQAKALI  165 (224)
Q Consensus        87 d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~-~~l~kI~~l~~~~  165 (224)
                      |  -+|....+-+......+...+..+|++.+  +.-+...-.-..+||+.+=.+-|--+.....+ .-++.++++++. 
T Consensus        82 d--GvHLgq~d~~~~~~r~~l~~~~iiG~S~h--~~~e~~~A~~~gaDYi~~Gpvf~T~tK~~~~~~~g~~~l~~~~~~-  156 (210)
T PRK00043         82 D--GVHLGQDDLPVADARAILGPDAIIGVSTH--TLEEAAAAAAAGADYVGVGPIFPTPTKKDAKPAVGLELLREAREA-  156 (210)
T ss_pred             C--EEECCCCCCCHHHHHHHCCCCCEEEEECC--CHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH-
T ss_conf             9--89769887689999975198878998479--999999998828983887452147988888777899999999984-


Q ss_pred             HCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             138652698158998899999967998999742663789989999999999997
Q gi|254780975|r  166 GKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKS  219 (224)
Q Consensus       166 ~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~~  219 (224)
                        .++++..=||||.+|+.++.++|++.+.+-|+||+++||.++.+++.+.-+.
T Consensus       157 --~~iPvvAIGGI~~~ni~~~~~~Ga~giAvis~I~~a~dp~~a~~~l~~~~~~  208 (210)
T PRK00043        157 --IDIPIVAIGGITPENAAEVLEAGADGVAVVSAITAAEDPAAAARALLAAFRA  208 (210)
T ss_pred             --CCCCEEEECCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             --7999899808899999999980999999708977699999999999999997


No 27 
>PRK03220 consensus
Probab=98.96  E-value=3e-07  Score=66.63  Aligned_cols=199  Identities=14%  Similarity=0.150  Sum_probs=138.3

Q ss_pred             CCCCEEECHHHHCCC--------------HHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf             979818817063258--------------899999999999659989999734263458434178999986412564168
Q gi|254780975|r    1 MTPSIQIVPSILAAD--------------FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD   66 (224)
Q Consensus         1 M~k~~~IspSil~~d--------------~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d   66 (224)
                      |..+|+|.|+|.=.|              ..+-.+..+...+.|+|++|+==.||.+..+ .-..+.++.+.+.+..|+.
T Consensus         1 m~~~mrIIPaIDi~~g~~Vkg~~~~~~~~~gdP~~~a~~~~~~G~d~lhivDld~a~~g~-~~n~~~I~~i~~~~~~pi~   79 (257)
T PRK03220          1 MGLAVRVIPCLDVDAGRVVKGVNFENLRDAGDPVELAAVYDAEGADELTFLDVTASSSGR-ATMLDVVRRTAEQVFIPLT   79 (257)
T ss_pred             CCCCEEEEEEEEEECCEEEECCCCCCCEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHHHCCCCCEE
T ss_conf             997648999999999988857777786788899999999998699989999088875676-3079999999850696489


Q ss_pred             EEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEE-EEEEEC-----------------------C--
Q ss_conf             56788512033676404776079997066421589998677649825-998523-----------------------3--
Q gi|254780975|r   67 CHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKT-GVAINP-----------------------E--  120 (224)
Q Consensus        67 vHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~-Giai~p-----------------------~--  120 (224)
                      +===+.+ ...++.+.++|+|.|++-..+.++++-+-+.++..|.+. -+++..                       .  
T Consensus        80 vGGGIrs-~e~~~~ll~~GadkVvigs~a~~~p~~~~~~~~~fG~q~Iv~siD~k~~~~~~~~~~~g~~v~~~g~~~~t~  158 (257)
T PRK03220         80 VGGGVRT-VEDVDSLLRAGADKVSVNTAAIARPELLAELARRFGSQCIVLSVDARRVPVGSAPTPSGFEVTTHGGRRGTG  158 (257)
T ss_pred             EECCCCC-HHHHHHHHHCCCCEEECHHHHHHCCHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEECC
T ss_conf             8478587-999999998197508720667759477789998709866999999886256774346874999728826028


Q ss_pred             -CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEEC
Q ss_conf             -344789988620-14028998306776533220135778998654313865269815899-889999996799899974
Q gi|254780975|r  121 -TPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVG  197 (224)
Q Consensus       121 -T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~G  197 (224)
                       ++.+.++.+.+. +..+++-.|+---.++.++-+.++++++      ..++++.+-||++ .+.+..+.+.|++-+++|
T Consensus       159 ~~~~~~i~~~~~~g~geil~tdI~rDGt~~G~d~~l~~~i~~------~~~~piIasGGv~s~~di~~l~~~g~~gv~~g  232 (257)
T PRK03220        159 IDAVEWAARGAELGVGEILLNSMDADGTKAGFDLEMLRAVRA------AVTVPVIASGGAGAVEHFAPAVAAGADAVLAA  232 (257)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEH
T ss_conf             759999999862698889999886866023789699999997------48999899878999999999997899799874


Q ss_pred             HHHHCCCCHH
Q ss_conf             2663789989
Q gi|254780975|r  198 SSFFNQKGEI  207 (224)
Q Consensus       198 saif~~~d~~  207 (224)
                      ++++..+-..
T Consensus       233 ~a~~~~~~s~  242 (257)
T PRK03220        233 SVFHFGELTI  242 (257)
T ss_pred             HHHHCCCCCH
T ss_conf             6878899889


No 28 
>PRK13129 consensus
Probab=98.95  E-value=3.3e-07  Score=66.38  Aligned_cols=190  Identities=17%  Similarity=0.286  Sum_probs=136.9

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC   67 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv   67 (224)
                      +.|=+.+.  |.-...+.++.+.++|+|.+-+-|      .||--.         .++++  -++.++++|+.++.|+=+
T Consensus        21 li~yitaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~Pivl  100 (267)
T PRK13129         21 LMPFLMAGDPDLETTAEALLILQENGADLIELGIPYSDPLADGPVIQAAATRALQSGTTLEKVLEMLESLKGKLTIPIIL  100 (267)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf             89887071899899999999999779999997998888776589999999999976987899999999854347888899


Q ss_pred             EEEEE-E------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEE
Q ss_conf             67885-1------2033676404776079997066421589998677649825998523334478998862014-02899
Q gi|254780975|r   68 HLMIS-S------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIM  139 (224)
Q Consensus        68 HLMv~-~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM  139 (224)
                        |.= |      .++|+..+.++|+|=+.+.==-.+.-.+..+.++++|..+-.-+.|.|+-+.+..+..... +|-+.
T Consensus       101 --M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~~~gFiY~v  178 (267)
T PRK13129        101 --FTYYNPLLNRGMERFCEQAAAAGVAGLVVPDLPLEEAEKLSPIAAERGIDLILLVAPTTPAERMKRIAQQSRGFTYLV  178 (267)
T ss_pred             --EEEHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEE
T ss_conf             --861078988559999999986698757678999899999999998539816899489996899999981689808987


Q ss_pred             EEECCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             83067765--33220135778998654313865269815899-88999999679989997426637
Q gi|254780975|r  140 TVNPGFGG--QQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       140 ~V~PG~~G--q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      ++ .|-.|  +.+.+...+.++.+|+.   .+..+.|-=||+ .+.+..+.+.|||-+|+||++.+
T Consensus       179 s~-~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~~~~ADGvIVGSaiV~  240 (267)
T PRK13129        179 SV-TGVTGERSQMENRVESLLQQLRQV---TSKPIAVGFGISGPEQARQVREWGADGAIVGSAFVK  240 (267)
T ss_pred             EC-CCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf             34-665676544508899999999983---489817884479999999998549999998789999


No 29 
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.92  E-value=9.8e-07  Score=63.36  Aligned_cols=198  Identities=18%  Similarity=0.290  Sum_probs=139.0

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEE------ECCEECCC---------CCC--CHHHHHHHHHCCCCEEEEEEEEE-E---
Q ss_conf             889999999999965998999973------42634584---------341--78999986412564168567885-1---
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDV------MDGCFVPN---------ISF--GADVIRSLRSYSDSVFDCHLMIS-S---   73 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fvpn---------~~~--~~~~i~~i~~~t~~~~dvHLMv~-~---   73 (224)
                      |.....+.++.+.++|+|.+-+-+      .||--...         +++  ..+.++.+|+..+.|+=  ||.= |   
T Consensus        12 ~~~~~~~~~~~l~~~G~d~iEiGiPfsDP~aDGpvIq~A~~~aL~~g~~~~~~~~~~~~~r~~~~~piv--lM~Y~N~i~   89 (242)
T cd04724          12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIV--LMGYYNPIL   89 (242)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEE--EEEECHHHH
T ss_conf             979999999999976999999789988877658999999999997699499999999998734798889--998445766


Q ss_pred             ---CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEEEECCCCCC-
Q ss_conf             ---2033676404776079997066421589998677649825998523334478998862014-02899830677653-
Q gi|254780975|r   74 ---IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMTVNPGFGGQ-  148 (224)
Q Consensus        74 ---P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~V~PG~~Gq-  148 (224)
                         .++|++++.++|+|-+.+.==-.+.-....+.++++|..+-.-+.|.|+.+.++.+....+ +|-+++.. |-.|. 
T Consensus        90 ~~G~e~F~~~~~~~Gv~GviipDLP~ee~~~~~~~~~~~~i~~I~lvsPtt~~~ri~~i~~~s~gfiY~vs~~-GvTG~~  168 (242)
T cd04724          90 QYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRT-GVTGAR  168 (242)
T ss_pred             HHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECC-CCCCCC
T ss_conf             5289999999997599758706999578468999998659838899689887899999997479849998577-777877


Q ss_pred             -CCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCC---CCHHHHHHHHHHHHHH
Q ss_conf             -322013577899865431386526981589-9889999996799899974266378---9989999999999997
Q gi|254780975|r  149 -QLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQ---KGEISYAKRLNDLKKS  219 (224)
Q Consensus       149 -~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~---~d~~~~~~~l~~l~~~  219 (224)
                       .+.....+.++++|+.   .+..+.|==|| +.++++.+.+. ||.+|+||++.+.   ....+....++++++.
T Consensus       169 ~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~v~~~~~~-aDGvIVGSa~V~~i~~~~~~~~~~~~~~~~~~  240 (242)
T cd04724         169 TELPDDLKELIKRIRKY---TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKIIEEGGEEEALEALKELAES  240 (242)
T ss_pred             CCCHHHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHH-CCEEEECHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             55649999999999871---68974874387999999999965-99999878999999963968899999999997


No 30 
>PRK13117 consensus
Probab=98.90  E-value=1.7e-06  Score=61.83  Aligned_cols=191  Identities=15%  Similarity=0.193  Sum_probs=137.5

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHH-CCCCEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--7899998641-2564168
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRS-YSDSVFD   66 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~-~t~~~~d   66 (224)
                      +.|=+.+.  |+....+.+..+.++|+|.+-+-|      .||--.         .++++  -+++++.+|+ .++.|+=
T Consensus        19 li~yitaG~P~~~~t~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~piv   98 (268)
T PRK13117         19 FVPFVTLGDPSPELSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNANLRALAAGVTPAQCFELLAKIRAKYPTIPIG   98 (268)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf             89887270899799999999999669998997899888565579999999999845996999999998850047898779


Q ss_pred             EEEEE-EE------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEE
Q ss_conf             56788-51------203367640477607999706642158999867764982599852333447899886201402899
Q gi|254780975|r   67 CHLMI-SS------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIM  139 (224)
Q Consensus        67 vHLMv-~~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM  139 (224)
                      +  |. -|      .++|++.+.++|+|=+.+.==-.+.-.+..+.++++|..+-.-+.|.|+-+.+..+....+-.+-.
T Consensus        99 l--M~Y~N~i~~~G~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~gl~~I~lv~Ptt~~~Ri~~i~~~a~GFiY~  176 (268)
T PRK13117         99 L--LLYANLVFANGIDNFYARCAEAGVDSVLIADVPVEESAPFRQAAKKHGIAPIFICPPNADDDTLRQIASLGRGYTYL  176 (268)
T ss_pred             E--EECCCHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf             9--73262898717999999999769877985799978858999999867983799847999999999999747985999


Q ss_pred             EEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHC
Q ss_conf             830677653--32201357789986543138652698158998-8999999679989997426637
Q gi|254780975|r  140 TVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       140 ~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      -..+|-.|.  .+.+..-+.++++|+.   .+.++.|-=||+. +.++...+.++|-+|+||++.+
T Consensus       177 vs~~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~~~~aDGvIVGSaiV~  239 (268)
T PRK13117        177 LSRAGVTGAENKAAAPLNHLVEKLKEY---NAPPPLQGFGISEPEQVKAAIKAGAAGAISGSAIVK  239 (268)
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHC---CCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf             836777889866627799999999964---799869983789999999998638998998789999


No 31 
>PRK02621 consensus
Probab=98.89  E-value=5.6e-07  Score=64.91  Aligned_cols=202  Identities=19%  Similarity=0.148  Sum_probs=136.7

Q ss_pred             CCCCEEECHHHHCCCH--------------HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf             9798188170632588--------------99999999999659989999734263458434178999986412564168
Q gi|254780975|r    1 MTPSIQIVPSILAADF--------------SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD   66 (224)
Q Consensus         1 M~k~~~IspSil~~d~--------------~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d   66 (224)
                      |.| |+|.|+|.=.|-              .+..+..+...+.|+|++|+==.|+.+-.+ ....+.++++++.+..|+.
T Consensus         1 Mlk-~RIiPaidi~~g~~Vk~~~~~~~~~~gdP~~~ak~~~~~gad~lhivDld~a~~~~-~~~~~~I~~i~~~~~ipi~   78 (254)
T PRK02621          1 MLA-KRIIPCLDVAAGRVVKGVNFVGLRDAGDPVELACRYSQAGADELVFLDITATHEGR-ATLIDVVYRTAEQVFIPLT   78 (254)
T ss_pred             CCC-CCEEEEEEEECCEEEECCCCCCCEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHCCCCEE
T ss_conf             986-61599999999999978577784788899999999998599999998266765675-4289999999986798589


Q ss_pred             EEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCE-EEEEEEC-------------------CCC---H
Q ss_conf             5678851203367640477607999706642158999867764982-5998523-------------------334---4
Q gi|254780975|r   67 CHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKK-TGVAINP-------------------ETP---V  123 (224)
Q Consensus        67 vHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k-~Giai~p-------------------~T~---~  123 (224)
                      +===+.+ ...++++.++|+|.|++-..+..+++-+-+..+..|.+ +-+++..                   .|.   .
T Consensus        79 vGGGIrs-~e~~~~ll~~GadkVii~s~a~~np~~~~~~~~~fG~q~Iv~siD~k~~~~~~~gw~~~~~~~~~~~~~~~~  157 (254)
T PRK02621         79 VGGGISS-LEGIKELLRAGADKVSLNSAAVRDPDLVRQASDRFGSQCIVVAIDARRRKPDNPGWDVYVRGGRENTGLDAV  157 (254)
T ss_pred             EECCEEE-HHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCCCCCHH
T ss_conf             9633535-799999997499989998867647354455687569843399999553534788628996688455776799


Q ss_pred             HHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHH-HHHCCCCEEEECHHH
Q ss_conf             789988620-140289983067765332201357789986543138652698158998-89999-996799899974266
Q gi|254780975|r  124 AILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKS-LVQAGADLLVVGSSF  200 (224)
Q Consensus       124 ~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~-l~~~Gad~~V~Gsai  200 (224)
                      +.++.+.+. +..+++-.|+---.++.++-+.++++.+      ..++++.+-||++. +.+.+ +...|++-+++|+++
T Consensus       158 ~~~~~~~~~g~geil~tdI~~DGt~~G~d~~l~~~i~~------~~~iPvi~sGGi~s~edi~~~l~~~~v~gvivG~al  231 (254)
T PRK02621        158 EWAEEVAERGAGEILLTSMDGDGTQAGYDLELTRAIAE------AVEIPVIASGGAGCCDHIAEALTEGKAEAALLASLL  231 (254)
T ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHH
T ss_conf             99988776288969998880479757688699999997------179979997799999999999985898198775787


Q ss_pred             HCCCCHHHHHH
Q ss_conf             37899899999
Q gi|254780975|r  201 FNQKGEISYAK  211 (224)
Q Consensus       201 f~~~d~~~~~~  211 (224)
                      +..+-....++
T Consensus       232 ~~~~~~l~e~K  242 (254)
T PRK02621        232 HYGQLTIAEIK  242 (254)
T ss_pred             HCCCCCHHHHH
T ss_conf             88999999999


No 32 
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.86  E-value=1.7e-06  Score=61.91  Aligned_cols=186  Identities=15%  Similarity=0.188  Sum_probs=128.9

Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf             63258899999999999659989999734263458434178999986412564168567885120336764047760799
Q gi|254780975|r   11 ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIIT   90 (224)
Q Consensus        11 il~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~   90 (224)
                      .+..|+.++.+   ...+.|++++|+==.||.+-. -.-..+.++.+++.+..|+.+-==+.+ ..-++.+.++|++.|+
T Consensus        26 ~y~~dP~~~A~---~~~~~Ga~~lhvvDLd~A~~g-~~~n~~~I~~i~~~~~~pi~vGGGIrs-~e~~~~~l~~GadkVv  100 (241)
T PRK00748         26 VYGDDPLAQAQ---AWQDQGAEWLHLVDLDGAFAG-RPVNLELIEAIVAAVDIPVQLGGGIRD-LETVEAYLDAGVARVI  100 (241)
T ss_pred             EECCCHHHHHH---HHHHCCCCEEEEEECCCCCCC-CCCHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHCCCCEEE
T ss_conf             60789999999---999879998999978542028-820799999999867999998277074-9999999976977588


Q ss_pred             EECCCCCCHHHHHHHHHHCCCEEEEEEEC------------CC---CHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHH
Q ss_conf             97066421589998677649825998523------------33---44789988620-1402899830677653322013
Q gi|254780975|r   91 FHPESSPHIRRSLRTIHAMGKKTGVAINP------------ET---PVAILEDVIDE-IDMILIMTVNPGFGGQQLIEST  154 (224)
Q Consensus        91 ~H~E~~~~~~~~i~~i~~~g~k~Giai~p------------~T---~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~  154 (224)
                      +-.++..+++-+-+.+++.|-++-+++..            .|   +.+.++.+.+. +..+++..|+---..+.+.-+.
T Consensus       101 igS~a~~n~~~i~~~~~~~g~~ivvsiD~k~~~v~~~gw~~~t~~~~~~~i~~~~~~G~~eii~tdI~~DGt~~G~d~~l  180 (241)
T PRK00748        101 IGTAAVKNPELVKEACKKFPGRIVVGLDARDGKVATRGWQEVSGVDLEDLAKRFEDAGVAAIIYTDISRDGTLSGPNVEL  180 (241)
T ss_pred             ECCHHHHCHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHH
T ss_conf             64710339689999986235557999982166540157554679748999999985587569998870568547689999


Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHC---CCCEEEECHHHHCCCCHH
Q ss_conf             57789986543138652698158998-899999967---998999742663789989
Q gi|254780975|r  155 IPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQA---GADLLVVGSSFFNQKGEI  207 (224)
Q Consensus       155 l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~---Gad~~V~Gsaif~~~d~~  207 (224)
                      ++++.+      ..++++.+-|||+. +.+..|.+.   |++-+++|+|++..+=..
T Consensus       181 ~~~i~~------~~~ipviasGGv~s~~Di~~L~~~~~~gv~gviiG~Aly~g~i~l  231 (241)
T PRK00748        181 TRELAA------ATPIPVIASGGVSSLDDIRALKALGPEGVEGVIVGKALYEGKFDL  231 (241)
T ss_pred             HHHHHH------HCCCCEEEECCCCCHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCH
T ss_conf             999998------689989998899999999999860317924899878987799899


No 33 
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=98.86  E-value=1.3e-06  Score=62.51  Aligned_cols=184  Identities=17%  Similarity=0.203  Sum_probs=128.3

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEE
Q ss_conf             06325889999999999965998999973426345843417899998641256416856788512033676404776079
Q gi|254780975|r   10 SILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDII   89 (224)
Q Consensus        10 Sil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i   89 (224)
                      .....|+.++.+   .+.+.|+|++|+==.|+.+- +-.-..+.++.+.+.+..|+.+-==+.+. ..++.+.+.|++.|
T Consensus        25 ~~~~gdP~~~a~---~~~~~g~d~i~ivDLda~~~-~~~~n~~~i~~i~~~~~~pi~vgGGIrs~-e~~~~~l~~Ga~kv   99 (229)
T pfam00977        25 LVYAGDPVELAK---RYEEEGADELHFVDLDAAKE-GRPVNLDLIEEIAEEVFIPVQVGGGIRSL-EDAERLLSAGADKV   99 (229)
T ss_pred             CEECCCHHHHHH---HHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHHHCCCCEEEECCEEEH-HHHHHHHHCCCCEE
T ss_conf             367799999999---99987999899996866302-68106999999998669878996456118-99999997699899


Q ss_pred             EEECCCCCCHHHHHHHHHHCCC-EEEEEEEC--C--------------CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCC
Q ss_conf             9970664215899986776498-25998523--3--------------344789988620-1402899830677653322
Q gi|254780975|r   90 TFHPESSPHIRRSLRTIHAMGK-KTGVAINP--E--------------TPVAILEDVIDE-IDMILIMTVNPGFGGQQLI  151 (224)
Q Consensus        90 ~~H~E~~~~~~~~i~~i~~~g~-k~Giai~p--~--------------T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~  151 (224)
                      ++-.++.++++-+-+.++..|. ++-+++..  .              ++.+.++.+.+. +-.++++.|+---.++.+.
T Consensus       100 vigs~~~~~~~~~~~~~~~~g~q~iv~siD~k~~~~v~~~~~~~~~~~~~~~~i~~~~~~g~~eii~tdi~~dGt~~G~d  179 (229)
T pfam00977       100 IIGTAAVKNPELIKEAAEKFGSQCIVVAIDAKRDGKVAINGWREETGIDAVEWAKKLEELGAGEILLTDIDRDGTLSGPD  179 (229)
T ss_pred             EECCCHHHCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
T ss_conf             95860430937899999980986479999871451799806433567443344567765167506887750427566689


Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             013577899865431386526981589-98899999967998999742663789
Q gi|254780975|r  152 ESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       152 ~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      -+.++++++      ..+.++.+-||| +.+.+..+.+.|++-+++||+++...
T Consensus       180 ~~l~~~i~~------~~~~pii~~GGv~~~~di~~l~~~g~~gvivg~al~~g~  227 (229)
T pfam00977       180 LELTRELAE------AVNIPVIASGGVGSLEDLKELFSEGVDGVIAGSALHEGE  227 (229)
T ss_pred             HHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCCC
T ss_conf             999999997------689989998589999999999987998999857866878


No 34 
>PRK13131 consensus
Probab=98.85  E-value=1.9e-06  Score=61.49  Aligned_cols=208  Identities=16%  Similarity=0.242  Sum_probs=143.5

Q ss_pred             EEECHHHHCCC--HHHHHHHHHHHHHCCCCEEEEEE------ECCEEC--------CCCC--CCHHHHHHHHH-CCCCEE
Q ss_conf             18817063258--89999999999965998999973------426345--------8434--17899998641-256416
Q gi|254780975|r    5 IQIVPSILAAD--FSRLGEEISNITKAGAKQIHFDV------MDGCFV--------PNIS--FGADVIRSLRS-YSDSVF   65 (224)
Q Consensus         5 ~~IspSil~~d--~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv--------pn~~--~~~~~i~~i~~-~t~~~~   65 (224)
                      .-+.|=+.+.+  .....+.++.+.++|+|.+-+-+      +||--.        .|-+  -..+.++.+|+ .++.|+
T Consensus        11 ~alI~yitaG~P~~e~s~~~~~~l~~~GadiiEiGiPFSDP~ADGpvIQ~a~~rAL~~g~~~~~~~~~~~~r~~~~~~pi   90 (257)
T PRK13131         11 MAFIPFVTLGDPNYELSFEIIKTLIISGVSALELGFAFSDPVADGITIQASHLRALKHASMAKNFQLLKKIRDYNHHIPI   90 (257)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf             45898861868998899999999997799999978998885545599999999999789889999999998704999888


Q ss_pred             EEEEEE-EEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCE-EE
Q ss_conf             856788-512------0336764047760799970664215899986776498259985233344789988620140-28
Q gi|254780975|r   66 DCHLMI-SSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDM-IL  137 (224)
Q Consensus        66 dvHLMv-~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~-vl  137 (224)
                      =+  |. -||      ++|++++.++|+|=+.+.=--.+.-....+.++++|...-.-+.|.|+-+.++.+....+- |-
T Consensus        91 vl--M~Y~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~s~GFiY  168 (257)
T PRK13131         91 GL--LAYANLIFSYGVDGFYAQAKECGVDSVLIADMPLIEKELVIKSAQKHQIKQIFIASPNASVKDLEQVATHSQGYIY  168 (257)
T ss_pred             EE--ECCHHHHHHHCHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf             99--9276899985799999999865998565589996788999999997798479972899988999999835897499


Q ss_pred             EEEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHH-----CCCCHHHH
Q ss_conf             99830677653--3220135778998654313865269815899-8899999967998999742663-----78998999
Q gi|254780975|r  138 IMTVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFF-----NQKGEISY  209 (224)
Q Consensus       138 iM~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif-----~~~d~~~~  209 (224)
                      +.+ .+|-.|.  .+.+..-+.++.+|+.   .+.++.|-=||+ .+.+..+...|||-+|+||++.     +..|....
T Consensus       169 ~vs-~~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~~~gaDGvIVGSaiV~~I~~~~~~~~~~  244 (257)
T PRK13131        169 TLA-RSGVTGASHTLENDASAIIKTLKTF---SPTPALLGFGISKKEHITNAKGMGADGVICGSALVKIIEENLNNENAM  244 (257)
T ss_pred             EEE-CCCCCCCCCCCCHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHH
T ss_conf             984-5767798643407699999999966---899879980579889999998559999998789999998727888999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254780975|r  210 AKRLNDLKK  218 (224)
Q Consensus       210 ~~~l~~l~~  218 (224)
                      .+++.+..+
T Consensus       245 ~~~i~~fv~  253 (257)
T PRK13131        245 LEKIKGFIG  253 (257)
T ss_pred             HHHHHHHHH
T ss_conf             999999999


No 35 
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=98.85  E-value=2.6e-06  Score=60.60  Aligned_cols=203  Identities=18%  Similarity=0.295  Sum_probs=140.7

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEECC---------CCCC--CHHHHHHHHH-CCCCEEE
Q ss_conf             81706325--889999999999965998999973------4263458---------4341--7899998641-2564168
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFVP---------NISF--GADVIRSLRS-YSDSVFD   66 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fvp---------n~~~--~~~~i~~i~~-~t~~~~d   66 (224)
                      +.|=+.+.  |.....+.++.+.++|+|.+-+-+      .||-...         .+++  -++.++.+|+ .++.|+=
T Consensus        11 li~yi~aG~P~~~~~~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~~piv   90 (258)
T pfam00290        11 FVPFVTAGDPDLETTLEILEALEEAGADAIELGIPFSDPLADGPTIQRANLRALAGGMTLDQTLELVEEIRNKGTSVPIV   90 (258)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf             89887073899899999999999769999997899888766589999999999986996999999999855128998889


Q ss_pred             EEEEEE-E------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEE
Q ss_conf             567885-1------2033676404776079997066421589998677649825998523334478998862014-0289
Q gi|254780975|r   67 CHLMIS-S------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILI  138 (224)
Q Consensus        67 vHLMv~-~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vli  138 (224)
                      +  |.= |      .++|++.+.++|+|-+.+.==-.+.-.+..+.++++|..+-.-+.|.|+.+.+..+....+ +|-+
T Consensus        91 l--M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lvsPtt~~~Ri~~i~~~s~gFiY~  168 (258)
T pfam00290        91 L--MTYYNPVLNYGIERFYAQAAEAGVDGLIIPDLPPEEADPLREAAEKHGIDLIFLVAPTTSDERLKTISEAASGFVYL  168 (258)
T ss_pred             E--EEECHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf             9--85208898729999999999759977870799988999999999845843588845888199999999608980899


Q ss_pred             EEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC-----CCCHHHHH
Q ss_conf             9830677653--3220135778998654313865269815899-88999999679989997426637-----89989999
Q gi|254780975|r  139 MTVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN-----QKGEISYA  210 (224)
Q Consensus       139 M~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~-----~~d~~~~~  210 (224)
                      ++ .+|-.|.  .+.+..-+.++++|+.   .+..+.|-=||+ .+.+..+. .+||-+|+||++.+     ..++....
T Consensus       169 vs-~~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~-~~aDGvIVGSaiv~~i~~~~~~~~~~~  243 (258)
T pfam00290       169 VS-RAGVTGARNAFNAQLDELVERLKKY---TNVPVAVGFGISTPEHVKKIA-AGADGVIVGSAIVDIIEENLDDPEQML  243 (258)
T ss_pred             EE-CCCCCCCCCCCCHHHHHHHHHHHHC---CCCCEEEEECCCCHHHHHHHH-CCCCEEEECHHHHHHHHHCCCCHHHHH
T ss_conf             85-3445676555638899999999860---699848994579999999998-159999984999999997040688999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780975|r  211 KRLNDL  216 (224)
Q Consensus       211 ~~l~~l  216 (224)
                      +.+.+.
T Consensus       244 ~~v~~f  249 (258)
T pfam00290       244 AKLEEF  249 (258)
T ss_pred             HHHHHH
T ss_conf             999999


No 36 
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.85  E-value=3e-06  Score=60.26  Aligned_cols=185  Identities=16%  Similarity=0.150  Sum_probs=123.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEE
Q ss_conf             25889999999999965998999973426345843417899998641256416856788512033676404776079997
Q gi|254780975|r   13 AADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFH   92 (224)
Q Consensus        13 ~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H   92 (224)
                      ..|+.++   ++...+.|+|++|+==.|+.. .+..-..+.++++++.+..|+.+===+.+ ...++.+...|++.|++-
T Consensus        26 ~gdP~~~---a~~~~~~gadelhivDld~a~-~g~~~n~~~i~~i~~~~~~pi~vGGGIrs-~~~~~~~l~~GadkVvig  100 (243)
T cd04731          26 AGDPVEL---AKRYNEQGADELVFLDITASS-EGRETMLDVVERVAEEVFIPLTVGGGIRS-LEDARRLLRAGADKVSIN  100 (243)
T ss_pred             CCCHHHH---HHHHHHCCCCEEEEECCCCCC-CCCCCHHHHHHHHHHHCCCCEEEEEEEEE-HHHHHHHHHCCCCEEEEC
T ss_conf             8899999---999998699999997067320-37700799999999867986899850664-799999997799789989


Q ss_pred             CCCCCCHHHHHHHHHHCCCE-EEEEEECC--------------------CCHHHHHHHHHH-CCEEEEEEEECCCCCCCC
Q ss_conf             06642158999867764982-59985233--------------------344789988620-140289983067765332
Q gi|254780975|r   93 PESSPHIRRSLRTIHAMGKK-TGVAINPE--------------------TPVAILEDVIDE-IDMILIMTVNPGFGGQQL  150 (224)
Q Consensus        93 ~E~~~~~~~~i~~i~~~g~k-~Giai~p~--------------------T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f  150 (224)
                      ..+.++++-+-+.++..|.+ +-+++...                    ++.+.++.+.+. +..+++-.|+---.++.|
T Consensus       101 s~~~~n~~~~~~~~~~~Gsq~Iv~siD~k~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~G~geil~tdI~~DGt~~G~  180 (243)
T cd04731         101 SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY  180 (243)
T ss_pred             CCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf             84423771435788756993099999976537896289846984412678999999998469878999872576856657


Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHH-HHHCCCCEEEECHHHHCCCCHHH
Q ss_conf             2013577899865431386526981589-9889999-99679989997426637899899
Q gi|254780975|r  151 IESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKS-LVQAGADLLVVGSSFFNQKGEIS  208 (224)
Q Consensus       151 ~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~-l~~~Gad~~V~Gsaif~~~d~~~  208 (224)
                      +-+.++++.+      ..++++.+-||+ +.+.+.+ +...|++-+++|++++......+
T Consensus       181 d~~l~~~i~~------~~~~piI~sGGi~~~~di~~~l~~~~~~gv~~g~~~~~~~~~l~  234 (243)
T cd04731         181 DLELIRAVSS------AVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIA  234 (243)
T ss_pred             CHHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCCHH
T ss_conf             9999999998------68999999889999999999998789829988227676998999


No 37 
>PRK13118 consensus
Probab=98.83  E-value=1.4e-06  Score=62.43  Aligned_cols=191  Identities=16%  Similarity=0.202  Sum_probs=134.8

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHC-CCCEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--78999986412-564168
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSY-SDSVFD   66 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~-t~~~~d   66 (224)
                      +.|=+.+.  |.-...+.++.+.++|+|.+-+-|      .||--.         .++++  .+++++++|+. ++.|+=
T Consensus        19 li~yitaG~P~~e~t~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~~Piv   98 (269)
T PRK13118         19 LVPFVTAGDPSPEASVPLLHGLVAAGADVIELGMPFSDPMADGPAIQLASERALAAGQGLADVLQMVREFRQGDQTTPVV   98 (269)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf             99887171899899999999999769999997898888666579999999999967986889999999986438999989


Q ss_pred             EEEEEEE-----CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEE
Q ss_conf             5678851-----2033676404776079997066421589998677649825998523334478998862014-028998
Q gi|254780975|r   67 CHLMISS-----IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMT  140 (224)
Q Consensus        67 vHLMv~~-----P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~  140 (224)
                      +=-+.+.     .++|++.+.++|+|=+.+.==-.+.-.+..+.++++|...-.-+.|.|+.+.+..+..... +|-+.+
T Consensus        99 lM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs  178 (269)
T PRK13118         99 LMGYLNPIEIYGYERFVAQAKEAGVDGLILVDLPPEEADELRAPAQAHGLDFIRLTSPTTSDERLPRVLEHASGYLYYVS  178 (269)
T ss_pred             EEEECCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHEEECCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf             97400078786399999999985997464589997899999999997598464036989878999999843788389985


Q ss_pred             EECCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             3067765--33220135778998654313865269815899-88999999679989997426637
Q gi|254780975|r  141 VNPGFGG--QQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       141 V~PG~~G--q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      +. |-.|  ..+.+...+.++++|+.   .+..+.|-=||+ .+.+..+.+ +||-+|+||++.+
T Consensus       179 ~~-GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~~~~v~~-~aDGvIVGSa~Vk  238 (269)
T PRK13118        179 LA-GVTGAAALDTEHVEEAVARLRRH---TDLPVVVGFGIRDAESAAAIAR-LADGVVVGSALVD  238 (269)
T ss_pred             CC-CCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHC-CCCEEEECHHHHH
T ss_conf             45-66787766719899999999962---5898178716799999999980-0999998589999


No 38 
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.82  E-value=1.7e-06  Score=61.76  Aligned_cols=211  Identities=15%  Similarity=0.266  Sum_probs=143.7

Q ss_pred             CCCCEEECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEECC---------CCCCCHHHHHHHHHCCCC
Q ss_conf             97981881706325--889999999999965998999973------4263458---------434178999986412564
Q gi|254780975|r    1 MTPSIQIVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFVP---------NISFGADVIRSLRSYSDS   63 (224)
Q Consensus         1 M~k~~~IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fvp---------n~~~~~~~i~~i~~~t~~   63 (224)
                      |+|+ -+.|=+.+.  |.....+.++.+.++ +|.+-+.+      .||--..         ..++ .++++.+|+.++.
T Consensus         2 ~~r~-ali~yitaG~P~~e~s~~~l~~l~~~-aDiiElGiPfSDPvADGpvIq~A~~~Al~~g~~~-~~i~~~~r~~~~~   78 (247)
T PRK13125          2 ISRP-GLGVYLTAGWPNAETFLEAIDGLVGL-VDFLELGIPPKNPKYDGPVIRKAHREVSYWGLDY-WSLLEEVRKKVGV   78 (247)
T ss_pred             CCCC-EEEEEEECCCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCH-HHHHHHHCCCCCC
T ss_conf             9886-58888718379989999999998647-9999979988987666099999999998769989-9999985056899


Q ss_pred             EEEEEEEEE-E-----CCHHHHHHCCCCCCEEEEE---CCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC
Q ss_conf             168567885-1-----2033676404776079997---066421589998677649825998523334478998862014
Q gi|254780975|r   64 VFDCHLMIS-S-----IDSHINIIADAGCDIITFH---PESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID  134 (224)
Q Consensus        64 ~~dvHLMv~-~-----P~~~i~~~~~~g~d~i~~H---~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D  134 (224)
                      |+=+  |.= |     .++|++.+.++|+|=+++.   +|..++.....+.++++|...-.-+.|.|+-+.+..+.....
T Consensus        79 pivl--M~Y~N~~~~g~e~F~~~~~~~GvdGvIipDLP~e~~ee~~~~~~~~~~~gl~~I~lvsPtt~~~ri~~i~~~s~  156 (247)
T PRK13125         79 PTYI--MTYLEDYVGSLDDLLNTAKEVGARGVLFPDLLIDFPDELEKYVELIRRYGLAPVFFTSPKFPDRLIRRLSKLSP  156 (247)
T ss_pred             CEEE--HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf             8897--29889999769999999998599758833888754678999999999769846999579981999999998689


Q ss_pred             EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC---CCCHHHHH
Q ss_conf             028998306776533220135778998654313865269815899-88999999679989997426637---89989999
Q gi|254780975|r  135 MILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN---QKGEISYA  210 (224)
Q Consensus       135 ~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~---~~d~~~~~  210 (224)
                      ...-+++.+ -.|.....+.-+.++++|++..  +..+.|==||+ .+.+.++.+.|+|-+|+||++.+   .....+..
T Consensus       157 gFvY~~~~g-vTG~~~~~~~~~~i~~ik~~~~--~~Pv~vGFGI~t~e~v~~~~~~~aDGvIVGSaiVk~i~~~~~~~~~  233 (247)
T PRK13125        157 LFIYLGLYP-ATGVELPVYVERNIKRVRELVG--DVYLVAGFAIDSPEDAAKALSAGADGVVVGTAFIRRLERNGVEEAL  233 (247)
T ss_pred             CEEEEEEEC-CCCCCCCCCHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHH
T ss_conf             779999443-6788773259999999998569--9985883287999999999855899999878999999976989999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999997
Q gi|254780975|r  211 KRLNDLKKS  219 (224)
Q Consensus       211 ~~l~~l~~~  219 (224)
                      +.+++|++.
T Consensus       234 ~~v~~l~~a  242 (247)
T PRK13125        234 SLLKEIRGA  242 (247)
T ss_pred             HHHHHHHHH
T ss_conf             999999999


No 39 
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.82  E-value=2.9e-06  Score=60.35  Aligned_cols=180  Identities=23%  Similarity=0.262  Sum_probs=125.5

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECC
Q ss_conf             88999999999996599899997342634584341789999864125641685678851203367640477607999706
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPE   94 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E   94 (224)
                      |+.++   .+...+.|++++|+==.||.+- +-.-..+.++++.+.+..|+.+-==+.+ ..-++.+.++|++.+++-.+
T Consensus        32 dP~~~---a~~~~~~Ga~~lhivDLd~a~~-g~~~n~~~I~~i~~~~~~pi~vGGGIrs-~~~i~~~l~~Ga~kvvigs~  106 (240)
T PRK13585         32 DPVEV---AKRWVDAGAKTLHLVDLDGAFE-GSRKNADIIEKIVEATDVSIQLGGGIRS-VEDAASLLDLGVDRVILGTA  106 (240)
T ss_pred             CHHHH---HHHHHHCCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHCCCCEEEECCC
T ss_conf             99999---9999987999799998977211-8944499999999737977899788587-99999999769989993981


Q ss_pred             CCCCHHHHHHHHHHCCC-EEEEEEEC------------C---CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHH
Q ss_conf             64215899986776498-25998523------------3---344789988620-1402899830677653322013577
Q gi|254780975|r   95 SSPHIRRSLRTIHAMGK-KTGVAINP------------E---TPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPK  157 (224)
Q Consensus        95 ~~~~~~~~i~~i~~~g~-k~Giai~p------------~---T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~k  157 (224)
                      +..+++-+-+..+..|. ++-+++..            .   ++.+.++.+-+. +..+++..++---.++.+.-+.+++
T Consensus       107 ~~~~~~~~~~i~~~~G~~~ivvsiD~k~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~eii~tdI~~dGt~~G~d~~~~~~  186 (240)
T PRK13585        107 AIENPELVRELSDEFGSERVMVSLDAKDGEVVIEGWTESTGKDPVEWAQRFEELGAGSILFTNVDVEGLLQGVNPEPVRE  186 (240)
T ss_pred             CHHCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHCCCCHHHHHH
T ss_conf             13184288999987397217999993065023247656788635577788886387358986423322325789899999


Q ss_pred             HHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             8998654313865269815899-88999999679989997426637899
Q gi|254780975|r  158 IRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       158 I~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      +.+      ..++++.+-|||+ .+.+..+.+.|++-+++|||++...=
T Consensus       187 i~~------~~~~pviasGGv~s~~di~~l~~~g~~gvivG~Al~~g~i  229 (240)
T PRK13585        187 LVD------SVDIPVIASGGVTSLDDVKALKEAGAAGVVVGSALYKGKF  229 (240)
T ss_pred             HHH------HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCC
T ss_conf             998------6899999988999999999999789978998768767997


No 40 
>PRK13136 consensus
Probab=98.81  E-value=5.3e-07  Score=65.05  Aligned_cols=191  Identities=21%  Similarity=0.235  Sum_probs=137.6

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC   67 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv   67 (224)
                      +.|=+.+.  |.-...+.++.+.++|+|.+-+-|      .||--.         .++++  -+++++.+|+.++.|+=+
T Consensus        14 lI~yitaG~P~~e~s~~~~~~l~~~G~DiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~pivl   93 (253)
T PRK13136         14 YVAYLTAGDGGLERSLESLLALAKGGVNILEVGVPFSDPVADGPVIQEASIRALAQGTTLHDVLTLITSFRQHSEIPIIL   93 (253)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf             58886484899899999999999659998997899888666579999999999986997999999999822578988899


Q ss_pred             EEEE-EEC-----CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEE
Q ss_conf             6788-512-----0336764047760799970664215899986776498259985233344789988620140289983
Q gi|254780975|r   68 HLMI-SSI-----DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTV  141 (224)
Q Consensus        68 HLMv-~~P-----~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V  141 (224)
                        |. -||     +++++++.++|+|-+.+.=--.+.-.+..+.+++.|...-.-+.|.|+.+.++.+.....-.+-+--
T Consensus        94 --M~Y~N~i~~~G~~f~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~~i~~I~liaPtt~~eRi~~i~~~a~gFiY~vs  171 (253)
T PRK13136         94 --FTYFNPLLAAGDKIYQQMKSAGVDGCLVVDLPVEEAAPHLTACKTAKIAPILLISPSTTQERLKKINEHGEGMLYYVC  171 (253)
T ss_pred             --ECCCHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf             --865179999799999999974987200678997776999999997588712552689988999999960898199985


Q ss_pred             ECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             0677653--3220135778998654313865269815899-889999996799899974266378
Q gi|254780975|r  142 NPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQ  203 (224)
Q Consensus       142 ~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~  203 (224)
                      .+|-.|.  .+.+..-+.++++|+.   .+..+.|-=||+ .+.++.+.+. ||.+|+||++.+.
T Consensus       172 ~~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~~~-ADGvIVGSaiV~~  232 (253)
T PRK13136        172 RPGTTGVRATLPENFPAKMNQIKSM---TSLPIVTGFGIANRKMAAQALQY-ADGFVIGSLFVKA  232 (253)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHH-CCEEEECHHHHHH
T ss_conf             5523687644638899999999972---69986997154999999999822-9999985899999


No 41 
>PRK02145 consensus
Probab=98.81  E-value=1.9e-06  Score=61.58  Aligned_cols=204  Identities=13%  Similarity=0.130  Sum_probs=135.6

Q ss_pred             CCCCEEECHHHHCCCH--------------HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf             9798188170632588--------------99999999999659989999734263458434178999986412564168
Q gi|254780975|r    1 MTPSIQIVPSILAADF--------------SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD   66 (224)
Q Consensus         1 M~k~~~IspSil~~d~--------------~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d   66 (224)
                      |.| .+|.|+|.=.|-              .+-.+..+...+.|+|++|+==.|+.+- +-....+.++.+++.+..|+.
T Consensus         2 ml~-kRiiPaidi~~g~~Vkg~~~~~~~~~gdP~~~a~~~~~~GadelhivDld~a~~-~~~~~~~~I~~i~~~~~iPi~   79 (257)
T PRK02145          2 ALA-KRIIPCLDVTAGRVVKGVNFVELRDAGDPVEIARRYDEQGADELTFLDITATSD-GRDLILPIIEAVASQVFIPLT   79 (257)
T ss_pred             CCC-CCEEEEEEEECCEEEECCCCCCEEECCCHHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHHHCCCCEE
T ss_conf             877-516999999999898577777738888999999999987999899997888766-754089999999965687489


Q ss_pred             EEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCE-EEEEEEC---------------------CCC--
Q ss_conf             5678851203367640477607999706642158999867764982-5998523---------------------334--
Q gi|254780975|r   67 CHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKK-TGVAINP---------------------ETP--  122 (224)
Q Consensus        67 vHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k-~Giai~p---------------------~T~--  122 (224)
                      +===+.+ ...++.+.++|++.|++-..+.++++-+-+.++..|.+ +-+++..                     .|.  
T Consensus        80 vGGGIrs-~e~~~~ll~~GadkVii~s~a~~np~~v~~~~~~fG~q~Iv~siD~k~~~~~~~~~~~~v~~~~~~~~t~~~  158 (257)
T PRK02145         80 VGGGVRA-VEDVRRLLNAGADKVSMNSSAVANPQLVRDAADKYGSQCIVVAIDAKRVSADGEPPRWEVFTHGGRKATGLD  158 (257)
T ss_pred             EECCCCC-HHHHHHHHHCCCCEEEEHHHHHHCCCHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEEECCCEECCCCC
T ss_conf             6277304-688999998199889841556659302245787669834499999873367777750899977871436774


Q ss_pred             -HHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCC-CCEEEECH
Q ss_conf             -4789988620-14028998306776533220135778998654313865269815899-88999999679-98999742
Q gi|254780975|r  123 -VAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAG-ADLLVVGS  198 (224)
Q Consensus       123 -~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~G-ad~~V~Gs  198 (224)
                       .+.++.+.+. +..+++-.|+---..+.++-+.++++.   +   ..++++.+-||++ .+.+.++.+.| ++.++.||
T Consensus       159 ~~~~~~~~~~~G~geil~tdI~rDG~~~G~dl~l~~~i~---~---~~~ipvIasGGi~s~~di~~~~~~~~~~av~~g~  232 (257)
T PRK02145        159 AVEWARKMAELGAGEILLTSMDRDGTKSGFDLALTRAVS---D---AVPVPVIASGGVGSLQHLADGITEGHADAVLAAS  232 (257)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHH---H---CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEHH
T ss_conf             557656887618786899998477877888979999998---6---2699899986899999999999808984876532


Q ss_pred             HHH-CCCCHHHHHHHH
Q ss_conf             663-789989999999
Q gi|254780975|r  199 SFF-NQKGEISYAKRL  213 (224)
Q Consensus       199 aif-~~~d~~~~~~~l  213 (224)
                      ++. +.-++.+..+.|
T Consensus       233 ~~~~~~~~i~e~k~~l  248 (257)
T PRK02145        233 IFHYGEHTVGEAKRFM  248 (257)
T ss_pred             HHHCCCCCHHHHHHHH
T ss_conf             6777998999999999


No 42 
>PRK01659 consensus
Probab=98.80  E-value=2.8e-06  Score=60.40  Aligned_cols=204  Identities=16%  Similarity=0.178  Sum_probs=134.7

Q ss_pred             CCCCEEECHHHHCCC--------------HHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf             979818817063258--------------899999999999659989999734263458434178999986412564168
Q gi|254780975|r    1 MTPSIQIVPSILAAD--------------FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD   66 (224)
Q Consensus         1 M~k~~~IspSil~~d--------------~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d   66 (224)
                      |-|| +|.|+|.=.|              ..+-.+..+...+.|+|++|+==.|+.+-.+ .-..+.++++.+.+..|+.
T Consensus         1 Ml~k-RIIPaidi~~g~~Vkg~~~~~~~~~gDP~~~ak~~~~~Gad~ihivDld~a~~g~-~~n~~~I~~i~~~~~ipi~   78 (252)
T PRK01659          1 MLTK-RIIPCLDVKEGRVVKGVNFVGLQDVGDPVEIAAAYNEAGADELVFLDITATHEGR-KTMVDVVEKVAAKVFIPLT   78 (252)
T ss_pred             CCCC-CEEEEEEEECCEEEECCCCCCCEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHCCCCEE
T ss_conf             9876-2599999999999989577784687899999999998799999999467665688-6489999999975697479


Q ss_pred             EEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCE-EEEEEEC------------------CC---CHH
Q ss_conf             5678851203367640477607999706642158999867764982-5998523------------------33---447
Q gi|254780975|r   67 CHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKK-TGVAINP------------------ET---PVA  124 (224)
Q Consensus        67 vHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k-~Giai~p------------------~T---~~~  124 (224)
                      +===+.+ ...++.+..+|+|.|++-..+.++++-+-+.++..|.+ +-+++..                  .|   ..+
T Consensus        79 vGGGIrs-~e~~~~~l~~GadkViigs~a~~n~~~i~~~~~~~G~q~IvvsiD~k~~~~~~~~~i~~~g~~~~~~~~~~~  157 (252)
T PRK01659         79 VGGGISS-VKDMKRLLRAGADKVSINSAAVLRPELITEGADHFGSQCIVVAIDAKYDAEAGKWNVYTHGGRVDTGLDAIA  157 (252)
T ss_pred             EECCEEC-HHHHHHHHHCCCCEEEECHHHHHCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCHHH
T ss_conf             9633200-688889874488559831777529153214676468632699999897056886899968995767777999


Q ss_pred             HHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHH-HHCCCCEEEECHHHH
Q ss_conf             89988620-14028998306776533220135778998654313865269815899-8899999-967998999742663
Q gi|254780975|r  125 ILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSL-VQAGADLLVVGSSFF  201 (224)
Q Consensus       125 ~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l-~~~Gad~~V~Gsaif  201 (224)
                      .++.+.+. +..+++-.|+---..+.++-+.++++++      ..++++-+-||++ .+.+.++ ...+++-+++|++++
T Consensus       158 ~i~~~~~~g~geil~tdI~rDG~~~G~dl~l~~~i~~------~~~~PiIasGGi~~~~di~~l~~~~~v~gv~~g~~~~  231 (252)
T PRK01659        158 WAKEAVRLGAGEILLTSMDADGTKNGFDLRLTKAISE------AVSVPVIASGGAGNADHMVEVFQKTTADAALAASIFH  231 (252)
T ss_pred             HHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH------HCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEHHHHH
T ss_conf             9999997699779999881458547689899999998------6899999991799999999999748982655754777


Q ss_pred             -CCCCHHHHHHHH
Q ss_conf             -789989999999
Q gi|254780975|r  202 -NQKGEISYAKRL  213 (224)
Q Consensus       202 -~~~d~~~~~~~l  213 (224)
                       +.-++.+..+.|
T Consensus       232 ~~~~sl~e~k~~L  244 (252)
T PRK01659        232 YGETSIKEVKAKL  244 (252)
T ss_pred             CCCCCHHHHHHHH
T ss_conf             7999999999999


No 43 
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.80  E-value=2.5e-06  Score=60.70  Aligned_cols=182  Identities=14%  Similarity=0.155  Sum_probs=129.7

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEE
Q ss_conf             06325889999999999965998999973426345843417899998641256416856788512033676404776079
Q gi|254780975|r   10 SILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDII   89 (224)
Q Consensus        10 Sil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i   89 (224)
                      -....|+.++.+..   .+.|++++|+==.|+..  .-.-..+.++.+.+.+..|+.+-==+.+ ...++.+..+|++.+
T Consensus        31 ~~~~~dP~~~a~~~---~~~ga~~lhivDLda~~--g~~~n~~~I~~i~~~~~~pi~vGGGIrs-~~~~~~~l~~Gadkv  104 (233)
T cd04723          31 LCSTSDPLDVARAY---KELGFRGLYIADLDAIM--GRGDNDEAIRELAAAWPLGLWVDGGIRS-LENAQEWLKRGASRV  104 (233)
T ss_pred             CCCCCCHHHHHHHH---HHCCCCEEEEEECCCCC--CCCCHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHCCCCEE
T ss_conf             30587999999999---98798989999786546--9975399999999878998899702276-999999986072015


Q ss_pred             EEECCCCCCHHHHHHHHHHCCC-EEEEEEEC-----------CCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHH
Q ss_conf             9970664215899986776498-25998523-----------33447899886201402899830677653322013577
Q gi|254780975|r   90 TFHPESSPHIRRSLRTIHAMGK-KTGVAINP-----------ETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPK  157 (224)
Q Consensus        90 ~~H~E~~~~~~~~i~~i~~~g~-k~Giai~p-----------~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~k  157 (224)
                      ++-.++.++ ....+.+.+.|. ++-+++..           ..+.+.++.+-..+..++++.++---.+|.+.-+.+++
T Consensus       105 vigs~~~~~-~~~~~~~~~~g~~~ivvslD~k~~~~~~~~~~~~~~~~~~~~~~~~~eii~t~Id~dGt~~G~d~~l~~~  183 (233)
T cd04723         105 IVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLER  183 (233)
T ss_pred             ECCCHHCCC-HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHH
T ss_conf             245100499-8999999997899989999998997872464348999999999658959998643446567779999999


Q ss_pred             HHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             899865431386526981589-98899999967998999742663789
Q gi|254780975|r  158 IRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       158 I~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      +.+   .   .+.++.+-||| +.+.+..+.+.|++-+++|||++...
T Consensus       184 i~~---~---~~~pvi~sGGv~s~~di~~l~~~g~~gvivg~alh~g~  225 (233)
T cd04723         184 LAA---R---ADIPVIAAGGVRSVEDLELLKKLGASGALVASALHDGG  225 (233)
T ss_pred             HHH---H---CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCC
T ss_conf             998---6---89989998899999999999978998999863977899


No 44 
>PRK13139 consensus
Probab=98.79  E-value=2.8e-06  Score=60.43  Aligned_cols=193  Identities=18%  Similarity=0.248  Sum_probs=135.7

Q ss_pred             CEEECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCE
Q ss_conf             81881706325--889999999999965998999973------426345---------84341--789999864125641
Q gi|254780975|r    4 SIQIVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSV   64 (224)
Q Consensus         4 ~~~IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~   64 (224)
                      +..+.|=+.+.  |.....+.++.+.++|+|.+-+-|      .||--.         .++++  -+++++.+|+.++.|
T Consensus        15 ~~~li~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~~~~~~~p   94 (254)
T PRK13139         15 DILLMTHIVLGYPSLQANREVIRAMVAGGVDLMELQIPFSEPMADGPVILKANQAALAGGFKVRECFDFAREVVAAFNIP   94 (254)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             92488785584899799999999999669999997898888666589999999999976997999999999997248976


Q ss_pred             EEEEEEEE-E------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EE
Q ss_conf             68567885-1------2033676404776079997066421589998677649825998523334478998862014-02
Q gi|254780975|r   65 FDCHLMIS-S------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MI  136 (224)
Q Consensus        65 ~dvHLMv~-~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~v  136 (224)
                      +=+  |+= |      .++|++++.++|++=+.++==-.+.-....+.++++|..+-.-+.|.|+.+.+..+....+ +|
T Consensus        95 ivl--M~Y~N~i~~~G~e~F~~~~~~~Gv~GvIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFi  172 (254)
T PRK13139         95 FLF--MTYYNILFKYGVERFIDEVADIGVKGLIVPDLPPEQAQDYIAQCRAKGMAPIGIYAPTSTDERMGKIAAAADGFI  172 (254)
T ss_pred             EEE--EEEHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             899--952599987099999999997599858647999788999999998469757999458999899999985169869


Q ss_pred             EEEEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             899830677653--3220135778998654313865269815899-889999996799899974266378
Q gi|254780975|r  137 LIMTVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQ  203 (224)
Q Consensus       137 liM~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~  203 (224)
                      -+.++ .|-.|.  .+.+...+.++.+|+.   .+..+.|-=||+ .+.++ ....+||-+|+||++.+.
T Consensus       173 Y~vs~-~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~v~-~~~~~aDGvIVGSaiVk~  237 (254)
T PRK13139        173 YCVAR-RGVTGSKTSFDEHVGAFLHRCRAA---TPLPLAVGFGVKSAADVD-YLKGKADIAVVGSQAIRL  237 (254)
T ss_pred             EEEEC-CCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHH-HHHCCCCEEEECHHHHHH
T ss_conf             99966-666798866458899999999855---899879973779999999-997169999988899999


No 45 
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.78  E-value=6.6e-07  Score=64.46  Aligned_cols=190  Identities=19%  Similarity=0.155  Sum_probs=119.7

Q ss_pred             ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf             81706325889999999999965998999973426345843417899998641256416856788512033676404776
Q gi|254780975|r    7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC   86 (224)
Q Consensus         7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~   86 (224)
                      |+|.-++  -.++.+.++++.++|++.+|+-.-+.....    -.+..+.+++.+. ...+.|++++.....   .+.|+
T Consensus         4 IT~~~~~--~~~~~~~l~~~l~~gv~~iqlR~k~~~~~~----~~~~a~~~~~~~~-~~~~~liInd~~~lA---~~~~~   73 (196)
T cd00564           4 ITDRRLD--GEDLLEVVEAALKGGVTLVQLREKDLSARE----LLELARALRELCR-KYGVPLIINDRVDLA---LAVGA   73 (196)
T ss_pred             ECCCCCC--CCHHHHHHHHHHHCCCCEEEECCCCCCHHH----HHHHHHHHHHHHH-HHCCEEEECCHHHHH---HHHCC
T ss_conf             8898646--514999999999859999998679989999----9999999999999-809979978869999---97399


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCC-CCHHHHHHHHHHHH
Q ss_conf             079997066421589998677649825998523334478998862-0140289983067765332-20135778998654
Q gi|254780975|r   87 DIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQL-IESTIPKIRQAKAL  164 (224)
Q Consensus        87 d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f-~~~~l~kI~~l~~~  164 (224)
                      |  -+|.................+..+|++.+  + .+.+..-.. .+|||.+=.|-|-.+-... -+..++.++++++.
T Consensus        74 d--GvHl~~~d~~~~~~r~~~~~~~iiG~S~h--~-~~e~~~a~~~g~DYi~~gpvf~T~tK~~~~~~~g~~~l~~~~~~  148 (196)
T cd00564          74 D--GVHLGQDDLPVAEARALLGPDLIIGVSTH--S-LEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL  148 (196)
T ss_pred             C--EEECCCCCCCHHHHHHHHCCCCEEEECCC--C-HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             8--79558466899999987288975882478--8-99999988709993886465578988887787788999999986


Q ss_pred             HHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf             31386526981589988999999679989997426637899899999999
Q gi|254780975|r  165 IGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLN  214 (224)
Q Consensus       165 ~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~  214 (224)
                         .++++.+=||||.+|+.++.++|++.+.+.|+||+++||.++.+++.
T Consensus       149 ---~~~Pv~AiGGI~~~ni~~~~~~G~~giAv~s~i~~~~dp~~~~~~l~  195 (196)
T cd00564         149 ---VEIPVVAIGGITPENAAEVLAAGADGVAVISAITGADDPAAAARELL  195 (196)
T ss_pred             ---CCCCEEEECCCCHHHHHHHHHCCCCEEEEHHHHHCCCCHHHHHHHHH
T ss_conf             ---79998998589999999999809999997299777999999999972


No 46 
>PRK13135 consensus
Probab=98.78  E-value=2.4e-06  Score=60.90  Aligned_cols=191  Identities=17%  Similarity=0.204  Sum_probs=134.4

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC   67 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv   67 (224)
                      +.|=+.+.  |.....+.++.+.++|+|.+-+-|      .||--.         ..+++  -.+.++.+|+.++.|+=+
T Consensus        19 li~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~Pivl   98 (267)
T PRK13135         19 LVTFITAGDPDLATTEALIPLLAESGADIIELGVPFSDPMADGPTIQLSSERALAAGTTLPRILAMVRSVRRRCQVPIVL   98 (267)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf             89887171899899999999999759999997899898666589999999999976984999999999863358998899


Q ss_pred             EEEEEE-----CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEEE
Q ss_conf             678851-----2033676404776079997066421589998677649825998523334478998862014-0289983
Q gi|254780975|r   68 HLMISS-----IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMTV  141 (224)
Q Consensus        68 HLMv~~-----P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~V  141 (224)
                      =-+.+.     .++|++.+.++|+|-+.+.==--+.-.+....++++|...-.-+.|.|+-+.++.+..... +|-+.++
T Consensus        99 M~Y~N~i~~yG~e~F~~~~~~~GvdGlIipDLP~ee~~~~~~~~~~~~l~~I~lvsPtt~~~Ri~~i~~~s~GFiY~Vs~  178 (267)
T PRK13135         99 MGYYNPIFAYGLERFAADAAAAGVDGVLLVDLPPEEAEEFKACADRHGLDVIFLLTPTSDESRIRTVARLGRGFVYYVSV  178 (267)
T ss_pred             EECCHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEC
T ss_conf             84230998846899999999749974763789978889999999872961899808989579999999618981899854


Q ss_pred             ECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHC
Q ss_conf             0677653--32201357789986543138652698158998-8999999679989997426637
Q gi|254780975|r  142 NPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       142 ~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      . |-.|.  .+.+..-+.++++|+.   .+.++.|-=||+. +.+..+ ..+||-+|+||++.+
T Consensus       179 ~-GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~v~~i-~~~ADGvIVGSaiVk  237 (267)
T PRK13135        179 T-GVTGARSGVEATVGGNVAKIREK---ITVPVVVGFGISTPQQAADV-AAMADGVVVGSALVK  237 (267)
T ss_pred             C-CCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHH-HCCCCEEEECHHHHH
T ss_conf             5-66677644448899999999860---68984898167999999999-805999998789999


No 47 
>cd04732 HisA HisA.  Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.77  E-value=2.7e-06  Score=60.54  Aligned_cols=183  Identities=15%  Similarity=0.176  Sum_probs=128.0

Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf             63258899999999999659989999734263458434178999986412564168567885120336764047760799
Q gi|254780975|r   11 ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIIT   90 (224)
Q Consensus        11 il~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~   90 (224)
                      ....|+.++.+..   .+.|+|++|+==.|+.. .+-.-..+.++.|++.+..|+++-==+. -...++++.+.|++.++
T Consensus        26 ~~~gdP~~~a~~~---~~~g~d~l~i~DLdaa~-~~~~~n~~~I~~I~~~~~~pi~vGGGIr-s~~~~~~l~~~Ga~kvv  100 (234)
T cd04732          26 VYSDDPVEVAKKW---EEAGAKWLHVVDLDGAK-GGEPVNLELIEEIVKAVGIPVQVGGGIR-SLEDIERLLDLGVSRVI  100 (234)
T ss_pred             EECCCHHHHHHHH---HHCCCCEEEEEECCCHH-HCCCCHHHHHHHHHHHCCCCEEECCCCC-CHHHHHHHHHCCCCEEE
T ss_conf             7579999999999---98699989999675303-0891159999999976795689737717-59999999864887189


Q ss_pred             EECCCCCCHHHHHHHHHHCCC-EEEEEEEC---------------CCCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCH
Q ss_conf             970664215899986776498-25998523---------------3344789988620-140289983067765332201
Q gi|254780975|r   91 FHPESSPHIRRSLRTIHAMGK-KTGVAINP---------------ETPVAILEDVIDE-IDMILIMTVNPGFGGQQLIES  153 (224)
Q Consensus        91 ~H~E~~~~~~~~i~~i~~~g~-k~Giai~p---------------~T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~  153 (224)
                      +-.++..+++-.-+.++..|. ++-+++..               -++.+.++.+.+. +..+++++|+---.++.+.-+
T Consensus       101 i~s~~~~~~~~~~~~~~~~G~q~iv~slD~k~~~~~~~~~~~~~~~~~~~~i~~~~~~g~geiilt~i~~dGt~~G~d~~  180 (234)
T cd04732         101 IGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFE  180 (234)
T ss_pred             ECCCHHHCHHHHHHHHHHCCCCCEEEEEEEECCCHHCCCCCEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHH
T ss_conf             71401108278999999829764699999751200016864001351699999997458646998764256653568999


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             35778998654313865269815899-8899999967998999742663789
Q gi|254780975|r  154 TIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       154 ~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      .++++.+      ..+.++.+-||++ .+.+..+.+.|++-+++|||++...
T Consensus       181 ll~~i~~------~~~~p~i~~GGv~s~~di~~l~~~g~~gvivgsAlh~g~  226 (234)
T cd04732         181 LYKELAA------ATGIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK  226 (234)
T ss_pred             HHHHHHH------HCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEHHHHCCC
T ss_conf             9999986------579989998189999999999977998999988987799


No 48 
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.77  E-value=3.9e-06  Score=59.50  Aligned_cols=191  Identities=15%  Similarity=0.148  Sum_probs=118.5

Q ss_pred             ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf             81706325889999999999965998999973426345843417899998641256416856788512033676404776
Q gi|254780975|r    7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC   86 (224)
Q Consensus         7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~   86 (224)
                      |+-.-++.+.  + +.++...++|++++|+=-=+...-.    -.+..+.+++.. .+ ...|.+++   .++.....|+
T Consensus         7 IT~~~~~~~~--~-~~v~~al~~Gv~~iQlR~K~~s~~e----~~~~~~~l~~~~-~~-~~~lIIND---~~dlA~~~~a   74 (202)
T PRK07695          7 ISNGHMSFEE--L-VAVAMQIESEVDYIHIREREKSAKE----LYEGVESLLKKG-VP-ASKLIIND---RVDIALLLNI   74 (202)
T ss_pred             EECCCCCHHH--H-HHHHHHHHCCCCEEEECCCCCCHHH----HHHHHHHHHHHC-CC-CCEEEEEC---CHHHHHHCCC
T ss_conf             9799999789--9-9999999879999998899979999----999999999848-99-99899979---1999988499


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHH-HHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             079997066421589998677649825998523334478998-8620140289983067765332201357789986543
Q gi|254780975|r   87 DIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILED-VIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI  165 (224)
Q Consensus        87 d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~-~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~  165 (224)
                      |-+.+-.+... +.+.-+..  .+...|++.+  + ++.+.. .-..+||+.+=.+-|--+-....+..++.++++.+. 
T Consensus        75 dGVHLGq~D~~-~~~~R~~~--~~~~IG~S~h--~-~~e~~~a~~~gaDYi~~Gpif~T~tK~~~~~~G~~~l~~~~~~-  147 (202)
T PRK07695         75 HRVQLGYRSFD-VKSVREKF--PYLHVGYSVH--S-LEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSEIARA-  147 (202)
T ss_pred             CEEEECHHHCC-HHHHHHHC--CCCEEEEECC--C-HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH-
T ss_conf             98921821219-99999877--9989999579--9-9999999776999699725412688889887899999999986-


Q ss_pred             HCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             13865269815899889999996799899974266378998999999999999
Q gi|254780975|r  166 GKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       166 ~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
                        .++++..=||||.+|+..+.++|++.+.+-|+||+++||.+++++++++.+
T Consensus       148 --~~iPvvAIGGI~~~ni~~v~~~Ga~giAvis~I~~a~dp~~~~~~l~~~i~  198 (202)
T PRK07695        148 --LSIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSSNPYSKAKRYKESIR  198 (202)
T ss_pred             --CCCCEEEECCCCHHHHHHHHHCCCCEEEEHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             --799989986989999999998299999971897769999999999999999


No 49 
>PRK13119 consensus
Probab=98.76  E-value=6.4e-06  Score=58.14  Aligned_cols=189  Identities=20%  Similarity=0.260  Sum_probs=133.9

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHH-CCCCEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--7899998641-2564168
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRS-YSDSVFD   66 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~-~t~~~~d   66 (224)
                      +.|=+.+.  |.....+.++.+.++|+|.+-+-+      .||--.         ..+++  -.++++++|+ .++.|+=
T Consensus        17 li~yltaG~P~~e~s~~~l~~l~~~GadiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~piv   96 (261)
T PRK13119         17 LIPYITVGDPDIRTTLALMHGMVANGADILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRETDTQTPVV   96 (261)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf             89886483899899999999999669999997898888666589999999999977997889999999865148998989


Q ss_pred             EEEEEE-EC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEE
Q ss_conf             567885-12------033676404776079997066421589998677649825998523334478998862014-0289
Q gi|254780975|r   67 CHLMIS-SI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILI  138 (224)
Q Consensus        67 vHLMv~-~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vli  138 (224)
                      +  |.= ||      ++|++++.++|+|=+++.=--.+.-+...+.++++|...-.-+.|.|+-+.++.+..... +|-+
T Consensus        97 l--MtY~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFiY~  174 (261)
T PRK13119         97 L--MGYLNPVHKMGYREFAQEAAKAGVDGVLTVDSPVETIDPLYRELKDNGVDCIFLIAPTTTEDRIKTIAELAGGFVYY  174 (261)
T ss_pred             E--EECHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf             9--84037898862999999999759857983689978879999999975997644307999899999999728981999


Q ss_pred             EEEECCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHC
Q ss_conf             983067765--332201357789986543138652698158998-8999999679989997426637
Q gi|254780975|r  139 MTVNPGFGG--QQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       139 M~V~PG~~G--q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      +++. |-.|  +.+.+...++++.+|+.   .+.++.|-=||+. +.+..+ ..+||-+|+||++.+
T Consensus       175 vs~~-GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~-~~~aDGvIVGSaiV~  236 (261)
T PRK13119        175 VSLK-GVTGAASLDTDEVSRKIEYLHQY---IDIPIGVGFGISNAESARKI-GRVADAVIVGSRIVK  236 (261)
T ss_pred             EECC-CCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEECCCCHHHHHHH-HCCCCEEEECHHHHH
T ss_conf             7366-66687755548899999999863---69987998365999999998-734999998289999


No 50 
>PRK13113 consensus
Probab=98.75  E-value=1e-05  Score=56.83  Aligned_cols=210  Identities=19%  Similarity=0.238  Sum_probs=139.4

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHC-CCCEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--78999986412-564168
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSY-SDSVFD   66 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~-t~~~~d   66 (224)
                      +.|=+.+.  |.....+.++.+.++|+|.+-+-+      .||--.         ..+++  ..++++++|+. .+.|+=
T Consensus        19 li~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~~Piv   98 (263)
T PRK13113         19 FVAYVMAGDPDYDTSLEVMRGLPAAGVDIIELGMPFTDPMADGPTIQLAGQRALEGGMTLDRTLDMVRAFRKEDDTTPIV   98 (263)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf             89887382899799999999999769999997898888776589999999999977983889999999751238998889


Q ss_pred             EEEEE-EEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEE
Q ss_conf             56788-512------033676404776079997066421589998677649825998523334478998862014-0289
Q gi|254780975|r   67 CHLMI-SSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILI  138 (224)
Q Consensus        67 vHLMv-~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vli  138 (224)
                      +  |. -||      ++|++.+.++|+|=+.+.=--.+.-.+..+.++++|...-.-+.|.|+.+.+..+....+ +|-+
T Consensus        99 l--M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY~  176 (263)
T PRK13113         99 M--MGYYNPIYSRGVDRFLAEAKEAGIDGLIVVDLPPEEDSELCLPAQAAGLNFIRLATPTTDDRRLPKVLQNTSGFVYY  176 (263)
T ss_pred             E--EECHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEE
T ss_conf             9--83136898856999999987779436971799978889999999977986799947999999999998338984899


Q ss_pred             EEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHC---C-CCHHHHHHH
Q ss_conf             9830677653--322013577899865431386526981589988999999679989997426637---8-998999999
Q gi|254780975|r  139 MTVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFN---Q-KGEISYAKR  212 (224)
Q Consensus       139 M~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~---~-~d~~~~~~~  212 (224)
                      .++. |-.|.  .+.....+.++++|+.   .+.++.|-=||+...-......+||-+|+||++.+   . .+..+..+-
T Consensus       177 Vs~~-GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~~~~~~~~ADGvIVGSa~v~~i~e~~~~~~~~~~  252 (263)
T PRK13113        177 VSIT-GITGAAAAQAADVAPEVARIKAA---TDLPVIVGFGITTPEAAQAIAGVADGCVVGSAIVKLIGEGRPVAEVLAF  252 (263)
T ss_pred             EECC-CCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHCCCCEEEECHHHHHHHHHCCCHHHHHHH
T ss_conf             8345-56687755437799999999854---7998899837899899999973399999868999999828998999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999997862
Q gi|254780975|r  213 LNDLKKSALA  222 (224)
Q Consensus       213 l~~l~~~a~a  222 (224)
                      +++|+...-|
T Consensus       253 v~~l~~~~~~  262 (263)
T PRK13113        253 VATLADGAHA  262 (263)
T ss_pred             HHHHHHHHHC
T ss_conf             9999998741


No 51 
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.74  E-value=8.1e-06  Score=57.49  Aligned_cols=187  Identities=15%  Similarity=0.102  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf             99999999965998999973426345843417899998641256416856788512033676404776079997066421
Q gi|254780975|r   19 LGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPH   98 (224)
Q Consensus        19 l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~   98 (224)
                      -.+..+...+.|+|++|+==.||.+-. -....+.++.+.+.+..|+.+===+.+ ...++++...|+|.|++-.-+..+
T Consensus        33 P~~~a~~~~~~Gad~lhlvDld~a~~~-~~~n~~~I~~i~~~~~vpiqvGGGIrs-~e~~~~ll~~GadkViigS~a~~n  110 (252)
T PRK13597         33 PVEAARAYDEAGADELVFLDISATHEE-RAILLDVVARVAERVFIPLTVGGGVRS-LEDARKLLLSGADKVSVNSAAVRR  110 (252)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHCCCCEEEECHHHHHC
T ss_conf             999999999869999999956466668-663799999998626982898477130-899999985698779832666749


Q ss_pred             HHHHHHHHHHCCCE-EEEEEEC----------------CC---CHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHH
Q ss_conf             58999867764982-5998523----------------33---44789988620-1402899830677653322013577
Q gi|254780975|r   99 IRRSLRTIHAMGKK-TGVAINP----------------ET---PVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPK  157 (224)
Q Consensus        99 ~~~~i~~i~~~g~k-~Giai~p----------------~T---~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~k  157 (224)
                      ++-+-+.++..|.+ +-+++.-                .|   +++.+..+.+. +..+++=.|+---.++.++-+.+++
T Consensus       111 p~~i~~~~~~fG~q~Iv~~iD~~~~~~~~~v~~~~~~~~~~~~~~d~~~~~~~~G~geil~tdI~rDGt~~G~d~~l~~~  190 (252)
T PRK13597        111 PELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRM  190 (252)
T ss_pred             CHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEECCCEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHH
T ss_conf             37899999874996529999888618974167538727569769999999996489999997573768444769599999


Q ss_pred             HHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf             8998654313865269815899-8899999967998999742663789989999999
Q gi|254780975|r  158 IRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL  213 (224)
Q Consensus       158 I~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l  213 (224)
                      +++      ..++++.+-||+. .+.+.++.+.|++-+++|++++..+.....+++.
T Consensus       191 i~~------~~~~pvIasGGv~s~~dl~~l~~~g~~gvi~G~al~~~~~s~~e~k~~  241 (252)
T PRK13597        191 VAE------AVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPELKRY  241 (252)
T ss_pred             HHH------CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHH
T ss_conf             985------079989997898999999999878996998712767799999999999


No 52 
>PRK04281 consensus
Probab=98.74  E-value=1.1e-05  Score=56.68  Aligned_cols=188  Identities=14%  Similarity=0.128  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf             99999999965998999973426345843417899998641256416856788512033676404776079997066421
Q gi|254780975|r   19 LGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPH   98 (224)
Q Consensus        19 l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~   98 (224)
                      -.+..+...+.|+|++|+==.|+.+- +-....+.++++.+.+..|+.+===+.+ ...++++..+|+|.|++-..+.++
T Consensus        32 P~~~ak~~~~~GadelhivDld~a~~-~~~~~~~~I~~i~~~~~vpi~vGGGIrs-~e~~~~ll~~GadkViigs~a~~n  109 (254)
T PRK04281         32 PVEAAKRYNGEGADELTFLDITASSD-NRDTILHIIEEVAGQVFIPLTVGGGVRT-VADIRRLLNAGADKVSINTAAVTR  109 (254)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHHHCCCCEEEECCEEE-CHHHHHHHHCCCCEEEECHHHHHC
T ss_conf             99999999986999999996889877-7530899999998507962899777545-188999997699889977767649


Q ss_pred             HHHHHHHHHHCCCE-EEEEEEC-------------------CC---CHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHH
Q ss_conf             58999867764982-5998523-------------------33---44789988620-1402899830677653322013
Q gi|254780975|r   99 IRRSLRTIHAMGKK-TGVAINP-------------------ET---PVAILEDVIDE-IDMILIMTVNPGFGGQQLIEST  154 (224)
Q Consensus        99 ~~~~i~~i~~~g~k-~Giai~p-------------------~T---~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~  154 (224)
                      ++-+-+.++..|.+ +-+++..                   .|   +.+.+..+.+. +..+++-.|+---..+.++-+.
T Consensus       110 p~~l~~~~~~fG~q~Iv~siD~k~~~~~~~~~~i~~~g~~~~t~~~~~~~~~~~~~~g~geil~tdI~rDGt~~G~d~~l  189 (254)
T PRK04281        110 PDLIDEAAGFFGSQAIVAAVDAKAVNPENTRWEIFTHGGRNPTGLDAVEWAVEMQKRGAGEILLTGMDRDGTKQGFNLPL  189 (254)
T ss_pred             CHHHHHHHHHCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH
T ss_conf             26767678755982179999888502468845999758864775449999999875299899998885788768768699


Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCC-CCEEEECHHHH-CCCCHHHHHHHHH
Q ss_conf             577899865431386526981589-988999999679-98999742663-7899899999999
Q gi|254780975|r  155 IPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAG-ADLLVVGSSFF-NQKGEISYAKRLN  214 (224)
Q Consensus       155 l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~G-ad~~V~Gsaif-~~~d~~~~~~~l~  214 (224)
                      ++++++      ..++++.+-||+ +.+.+.++.+.| ++.++.|+++. +.-++.++.+.++
T Consensus       190 ~~~i~~------~~~iPvIasGGv~~~~di~~~~~~~~~~~v~~g~~~~~~~~sl~eak~~l~  246 (254)
T PRK04281        190 TRAVAE------AVDIPVIASGGVGNVRHLIEGITEGKADAVLAAGIFHFGEIAIREAKRAMR  246 (254)
T ss_pred             HHHHHH------HCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHHHH
T ss_conf             999986------169989997898999999999980898889764377779989999999999


No 53 
>PRK13140 consensus
Probab=98.73  E-value=5.3e-06  Score=58.66  Aligned_cols=203  Identities=15%  Similarity=0.184  Sum_probs=136.0

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEECC---------CCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf             81706325--889999999999965998999973------4263458---------4341--789999864125641685
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFVP---------NISF--GADVIRSLRSYSDSVFDC   67 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fvp---------n~~~--~~~~i~~i~~~t~~~~dv   67 (224)
                      ++|=+.+.  |.-...+-++.+.++|+|.+-+-+      .||--..         .+++  -.+.++.+|+.++.|+=+
T Consensus        16 li~y~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivl   95 (257)
T PRK13140         16 LSIYFTAGYPTLEDTVSIIKDLEKHGVDMIEIGIPFSDPLADGPVIQKSATQALKNGMTLKLLFEQLKDIRKEVQIPLIL   95 (257)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf             68888182898799999999999759999997898898776589999999999986998999999999974368988899


Q ss_pred             EEEEE-EC------CHHHHHHCCCCCCEEEEE---CCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EE
Q ss_conf             67885-12------033676404776079997---066421589998677649825998523334478998862014-02
Q gi|254780975|r   68 HLMIS-SI------DSHINIIADAGCDIITFH---PESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MI  136 (224)
Q Consensus        68 HLMv~-~P------~~~i~~~~~~g~d~i~~H---~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~v  136 (224)
                        |.= ||      ++|++.+.++|+|-+.+.   +|.  ..+.....++++|...-.-+.|.|+.+.++.+.+..+ +|
T Consensus        96 --M~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~ee--~~~~~~~~~~~~~i~~I~lvaPtt~~~Ri~~i~~~a~gFi  171 (257)
T PRK13140         96 --MGYLNPIMQYGFEKFCKKCAETGIDGVIIPDLPFDD--YQEHYKEIFEKYGLKNIMLITPQTSEERIREIDSHTDGFI  171 (257)
T ss_pred             --EECHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHH--HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCE
T ss_conf             --905599985179999999998499869835998567--5899999999869977998689998999999997399966


Q ss_pred             EEEEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC----CCCHHHH
Q ss_conf             899830677653--3220135778998654313865269815899-88999999679989997426637----8998999
Q gi|254780975|r  137 LIMTVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN----QKGEISY  209 (224)
Q Consensus       137 liM~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~----~~d~~~~  209 (224)
                      -+.++ +|-.|.  .+.+...+.++++|++.  .+..+.|-=||+ .+.++.+ ..+||-+|+||++.+    +.|+.+.
T Consensus       172 Y~vs~-~GvTG~~~~~~~~~~~~i~~ik~~~--~~~Pv~vGFGIs~~e~v~~~-~~~aDGvIVGSaivk~i~e~~~~~~~  247 (257)
T PRK13140        172 YMVSS-ASTTGAQQDFNNQKRAYFKRIKDMN--LKNPRMVGFGISNKATFNAA-CEYASGAIIGSAFVKLLKEEKNPEKA  247 (257)
T ss_pred             EECCC-CCCCCCCCCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHH-HHCCCEEEECHHHHHHHHHCCCHHHH
T ss_conf             87036-5666887665156899999999827--89986998057989999999-83199999879999999877987899


Q ss_pred             -HHHHHHHH
Q ss_conf             -99999999
Q gi|254780975|r  210 -AKRLNDLK  217 (224)
Q Consensus       210 -~~~l~~l~  217 (224)
                       .+-+++||
T Consensus       248 v~~fv~~lk  256 (257)
T PRK13140        248 ILKFVKEIK  256 (257)
T ss_pred             HHHHHHHHC
T ss_conf             999999962


No 54 
>PRK02747 consensus
Probab=98.73  E-value=6.7e-06  Score=58.03  Aligned_cols=204  Identities=15%  Similarity=0.137  Sum_probs=134.1

Q ss_pred             CCCCEEECHHHHCCCH--------------HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf             9798188170632588--------------99999999999659989999734263458434178999986412564168
Q gi|254780975|r    1 MTPSIQIVPSILAADF--------------SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD   66 (224)
Q Consensus         1 M~k~~~IspSil~~d~--------------~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d   66 (224)
                      |.| |+|.|+|.=.|-              .+-.+..+...+.|+|+||+==.|+.+- +-.-..+.++++++.+..|+.
T Consensus         1 Mlk-~rIIPaidi~~g~~Vkg~~~~~~~~~gdP~~~ak~~~~~Gadelh~vDl~~a~~-~~~~~~~lI~~i~~~~~ipi~   78 (257)
T PRK02747          1 MLK-VRVIPCLDVKDGRVVKGVNFVDLRDAGDPVEAARAYDAAGADELCFLDITASHE-NRGTMLDVVARTAEQCFMPLT   78 (257)
T ss_pred             CCC-CEEEEEEEEECCEEEECCCCCCEEECCCHHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHHHHCCCCEE
T ss_conf             987-559999999999998587777707888999999999986999899994767756-755289999999986699889


Q ss_pred             EEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCE-EEEEEECC---------------------CC--
Q ss_conf             5678851203367640477607999706642158999867764982-59985233---------------------34--
Q gi|254780975|r   67 CHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKK-TGVAINPE---------------------TP--  122 (224)
Q Consensus        67 vHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k-~Giai~p~---------------------T~--  122 (224)
                      +===+.+ ...++.+..+|+|.|++-.-+..+++-+-+.++..|.+ +-+++...                     |.  
T Consensus        79 vGGGIrs-~e~~~~ll~~GadkViigs~a~~np~l~~~~~~~fG~q~Iv~siD~k~~~~~~~~~~~~i~~~~~~~~t~~~  157 (257)
T PRK02747         79 VGGGVRT-VDDIRKLLLAGADKVSINSAAVARPEFVAEAADKFGSQCIVVAIDAKRVSPAGENDRWEIFTHGGRKPTGID  157 (257)
T ss_pred             EECCCCC-HHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCEECCCH
T ss_conf             8488207-388789987699689834446548347777887559657999998775157677873899988984634303


Q ss_pred             -HHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHH-HHHCCCCEEEECH
Q ss_conf             -4789988620-14028998306776533220135778998654313865269815899-889999-9967998999742
Q gi|254780975|r  123 -VAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKS-LVQAGADLLVVGS  198 (224)
Q Consensus       123 -~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~-l~~~Gad~~V~Gs  198 (224)
                       .+.+..+.+. +..+++=.|+---..+.++-+.++++.+      ..++++.+=||++ .+.+.+ +...+++.++.||
T Consensus       158 ~~~~~~~~~~~G~geil~tdI~rDG~~~G~dl~l~~~i~~------~~~~pvIasGGv~~~~di~~~~~~~~~~av~~g~  231 (257)
T PRK02747        158 AVEFAQKVVSLGAGEILLTSMDRDGTKAGFDLPLTRAIAD------AVRVPVIASGGVGTLDHLVEGVRDGHATAVLAAS  231 (257)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH------CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEHH
T ss_conf             9999999997099889999883557326788699999986------0799899977999999999999838984998832


Q ss_pred             HHH-CCCCHHHHHHHH
Q ss_conf             663-789989999999
Q gi|254780975|r  199 SFF-NQKGEISYAKRL  213 (224)
Q Consensus       199 aif-~~~d~~~~~~~l  213 (224)
                      ++. +.-++.++.+.|
T Consensus       232 ~~~~~~~~l~~ak~~L  247 (257)
T PRK02747        232 IFHFGTYTIGEAKAHM  247 (257)
T ss_pred             HHHCCCCCHHHHHHHH
T ss_conf             6776998999999999


No 55 
>PRK13134 consensus
Probab=98.73  E-value=4.9e-06  Score=58.87  Aligned_cols=201  Identities=18%  Similarity=0.221  Sum_probs=137.5

Q ss_pred             ECHHHHCCC--HHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf             817063258--89999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r    7 IVPSILAAD--FSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC   67 (224)
Q Consensus         7 IspSil~~d--~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv   67 (224)
                      +.|=+.+.+  .....+.++.+.++|+|.+-+-|      .||--.         ..+++  -.+.++.+|+..+.|+  
T Consensus        21 li~yitaG~P~~e~s~~~i~~l~~~GaDiiEiGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~~~~~~~pi--   98 (257)
T PRK13134         21 LIPFLTAGFPTSERFWDELEALDAAGADIIEVGVPFSDPVADGPVVAAASQRALESGVTLRWIMDGLAARKGRLRAGL--   98 (257)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCE--
T ss_conf             998870707997999999999997799999978988887655899999999999679987899999998744689998--


Q ss_pred             EEEEE-EC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEE
Q ss_conf             67885-12------033676404776079997066421589998677649825998523334478998862014-02899
Q gi|254780975|r   68 HLMIS-SI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIM  139 (224)
Q Consensus        68 HLMv~-~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM  139 (224)
                      =||.= ||      ++|++.+.++|+|-+.++==-.+.-......++++|...-.-+.|.|+-+.+..+..... +|-++
T Consensus        99 vlMtY~N~i~~yG~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~gFIY~v  178 (257)
T PRK13134         99 VLMGYLNPFMQYGFERFVRDAADAGVAGCIIPDLPLDEDADLRALLAARGMDLIALVGPNTGEGRMREYAAVASGYVYVV  178 (257)
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             99853459997468999999986798759946999778899999999759826996389999999999996288808998


Q ss_pred             EEECCCCCCC--CCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHC----CCCHHHHHHH
Q ss_conf             8306776533--2201357789986543138652698158998-8999999679989997426637----8998999999
Q gi|254780975|r  140 TVNPGFGGQQ--LIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFN----QKGEISYAKR  212 (224)
Q Consensus       140 ~V~PG~~Gq~--f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~----~~d~~~~~~~  212 (224)
                      ++ .|-.|..  +.....+.++++|+.   .+..+.|-=||+. +.++.+ ..+||-+|+||++.+    ..|..+..++
T Consensus       179 s~-~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~-~~~aDGvIVGSaiVk~i~~~gd~a~~~k~  253 (257)
T PRK13134        179 SV-MGTTGVRDGLPVEVADTLARARQC---FSIPVALGFGISRPAQLEGL-SHPPDAVIFGSALLRHLDAGGDAASFMKA  253 (257)
T ss_pred             EC-CCCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHH-HCCCCEEEECHHHHHHHHHCCCHHHHHHH
T ss_conf             43-556687645528899999999970---69987998067999999999-70399999879999999978988999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780975|r  213 LN  214 (224)
Q Consensus       213 l~  214 (224)
                      +.
T Consensus       254 ~~  255 (257)
T PRK13134        254 WA  255 (257)
T ss_pred             HH
T ss_conf             74


No 56 
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=98.72  E-value=2.3e-06  Score=61.00  Aligned_cols=183  Identities=17%  Similarity=0.191  Sum_probs=128.1

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCH
Q ss_conf             99999999659989999734263458434178999986412564168567885120336764047760799970664215
Q gi|254780975|r   20 GEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHI   99 (224)
Q Consensus        20 ~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~   99 (224)
                      .+.+++..++|++.+|+=.-|...-.   + .+..+.+++.+ ...++-|++++..+..-   +.++|-|  |....+-+
T Consensus        24 ~~~ve~al~~Gv~~vQlR~K~~~~~~---~-~~~a~~~~~lc-~~~~v~liINd~~dlA~---~~~AdGV--HlGq~D~~   93 (211)
T COG0352          24 LEWVEAALKGGVTAVQLREKDLSDEE---Y-LALAEKLRALC-QKYGVPLIINDRVDLAL---AVGADGV--HLGQDDMP   93 (211)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCHHH---H-HHHHHHHHHHH-HHHCCEEEECCCHHHHH---HCCCCEE--EECCCCCC
T ss_conf             99999999679949998028987499---9-99999999999-98198099668399997---6799889--70876545


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             899986776498259985233344789988620-1402899830677653322013577899865431386526981589
Q gi|254780975|r  100 RRSLRTIHAMGKKTGVAINPETPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV  178 (224)
Q Consensus       100 ~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv  178 (224)
                      ......+...+...|++.+   +.+....-... +|||-+=.+-|--+-..--+.-++.++++++...   +.+.+=||+
T Consensus        94 ~~~ar~~~~~~~iIG~S~h---~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~---iP~vAIGGi  167 (211)
T COG0352          94 LAEARELLGPGLIIGLSTH---DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVN---IPVVAIGGI  167 (211)
T ss_pred             HHHHHHHCCCCCEEEEECC---CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC---CCEEEECCC
T ss_conf             5889974199978983049---9999999876399999988867889998877467899999998279---998998488


Q ss_pred             CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9889999996799899974266378998999999999999
Q gi|254780975|r  179 TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       179 n~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
                      |.+|++.+.++||+.+.+-|+||.++|+..+.+++.+..+
T Consensus       168 ~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~  207 (211)
T COG0352         168 NLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALE  207 (211)
T ss_pred             CHHHHHHHHHHCCCEEEEHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             9999999998298769726686607988999999999987


No 57 
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.71  E-value=6.3e-06  Score=58.19  Aligned_cols=182  Identities=13%  Similarity=0.130  Sum_probs=116.8

Q ss_pred             HHHHHHHHCCCCEEEEEEECCEECCCCCCC--HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf             999999965998999973426345843417--899998641256416856788512033676404776079997066421
Q gi|254780975|r   21 EEISNITKAGAKQIHFDVMDGCFVPNISFG--ADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPH   98 (224)
Q Consensus        21 ~~i~~l~~~~~d~iHiDImDg~fvpn~~~~--~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~   98 (224)
                      +-++++.++|++++++=--+      .+-.  ....+.+++.+ ...++.|.+++   .++.....++|=  +|.--.+-
T Consensus        23 ~~ve~al~gGv~~vQlR~K~------~~~~e~~~~a~~~~~l~-~~~~v~lIIND---~vdlA~~~~AdG--VHLGq~Dl   90 (211)
T PRK03512         23 QWIERLLDAGVRTLQLRIKD------RRDEEVEADVVAAIALG-RRYNARLFIND---YWRLAIKHQAYG--VHLGQEDL   90 (211)
T ss_pred             HHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHHHH-HHHCCEEEEEC---CHHHHHHCCCCE--EECCCCCC
T ss_conf             99999998799999981799------99999999999999999-98098599978---689999719988--96596536


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             58999867764982599852333447899886201402899830677653-32201357789986543138652698158
Q gi|254780975|r   99 IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQ-QLIESTIPKIRQAKALIGKRSISLEVDGG  177 (224)
Q Consensus        99 ~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq-~f~~~~l~kI~~l~~~~~~~~~~I~vDGG  177 (224)
                      +......+...+...|++.+  +..+...-.-...|||-+=.+-|-.+-. +.-+..++.+++..+.  ..++++..=||
T Consensus        91 ~~~~aR~~lg~~~iIG~S~h--~~~e~~~A~~~gaDYig~Gpif~T~TK~~~~~p~G~~~l~~~~~~--~~~iPvvAIGG  166 (211)
T PRK03512         91 ETTDLNAIRAAGLRLGVSTH--DDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVER--LADYPTVAIGG  166 (211)
T ss_pred             CHHHHHHHCCCCCEEEEECC--CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH--CCCCCEEEECC
T ss_conf             88999986699978997429--999999998649983998563345887899887249999999997--17999899889


Q ss_pred             CCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             99889999996799899974266378998999999999999
Q gi|254780975|r  178 VTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       178 vn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
                      ||.+|+.++.++|++.+.+=|+||.++||.++.++|.+|..
T Consensus       167 I~~~n~~~v~~~Ga~gvAViSaI~~a~dp~~a~~~l~~l~~  207 (211)
T PRK03512        167 ISLERAPAVLATGVGSIAVVSAITQAADWRLATAQLLEIAG  207 (211)
T ss_pred             CCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHC
T ss_conf             68999999998399999995187469999999999999863


No 58 
>PRK13124 consensus
Probab=98.69  E-value=1.2e-05  Score=56.34  Aligned_cols=202  Identities=14%  Similarity=0.234  Sum_probs=136.5

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC   67 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv   67 (224)
                      +.|=+.+.  |.-...+.++.+.++|+|.+-+.+      .||-..         .++++  -+++++.+|+.++.|+=+
T Consensus        11 li~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~pivl   90 (257)
T PRK13124         11 FIPFITAGDPDPETTIDLVLALEEAGADILELGIPYSDPLADGPVIQRASKRALNGGMNIVKAMELVGKMRKKVTIPIVY   90 (257)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf             89886370899899999999999769999997898888776579999999999976996899999999852447888899


Q ss_pred             EEEEE-E------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEE
Q ss_conf             67885-1------2033676404776079997066421589998677649825998523334478998862014-02899
Q gi|254780975|r   68 HLMIS-S------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIM  139 (224)
Q Consensus        68 HLMv~-~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM  139 (224)
                        |.= |      .++|++.+.++|++=+.+.=--.+......+.++++|...-.-+.| |+-+.+..+....+ +|-++
T Consensus        91 --M~Y~N~i~~~G~e~F~~~~~~~Gv~GvIipDLP~eE~~~~~~~~~~~gl~~I~lvaP-Ts~~Ri~~i~~~s~gFiY~v  167 (257)
T PRK13124         91 --FTYYNPVLQYGLEKFFALARENGIDGLLIPDLPLEESGELQEICDKYGIYLIPLVAP-TSKERIKKIAEQAEGFVYCV  167 (257)
T ss_pred             --EEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC-CCHHHHHHHHHCCCCCEEEE
T ss_conf             --750078987579999999997599847778999799999999998668735788479-96799999985489838996


Q ss_pred             EEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHC----CCCHHHHHHH
Q ss_conf             830677653--322013577899865431386526981589-988999999679989997426637----8998999999
Q gi|254780975|r  140 TVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFN----QKGEISYAKR  212 (224)
Q Consensus       140 ~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~----~~d~~~~~~~  212 (224)
                      + ..|-.|.  .+.+..-+.++++|++   .+..+.|-=|| +.+.++.+.+ +||-+|+||++.+    ..+..+..+.
T Consensus       168 s-~~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~v~~~~~-~ADGvIVGSaivk~i~~~~~~~~~~~~  242 (257)
T PRK13124        168 S-SLGVTGVREEIETDLEEFIRTVKQY---SNVPVAVGFGISTPEQVQKMKE-IADGVVVGSALVEKIEEPEEREEALAE  242 (257)
T ss_pred             E-CCCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEECCCCHHHHHHHHH-HCCEEEECHHHHHHHHHCCCHHHHHHH
T ss_conf             2-4666787655608899999999861---7998389844699999999980-199999828999999856875789999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780975|r  213 LNDL  216 (224)
Q Consensus       213 l~~l  216 (224)
                      +.++
T Consensus       243 v~~f  246 (257)
T PRK13124        243 VEEF  246 (257)
T ss_pred             HHHH
T ss_conf             9999


No 59 
>PRK13116 consensus
Probab=98.66  E-value=8e-06  Score=57.54  Aligned_cols=192  Identities=19%  Similarity=0.228  Sum_probs=133.5

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHH-CCCCEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--7899998641-2564168
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRS-YSDSVFD   66 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~-~t~~~~d   66 (224)
                      +.|=+.+.  |...-.+.++.+.++|+|.+-+-+      +||--.         ..+++  -+++++.+|+ +++.|+-
T Consensus        19 lI~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~~G~~~~~~~~~v~~ir~~~~~~Piv   98 (278)
T PRK13116         19 FVPFIMLSDPSPEEAFQIISTAIEAGADALELGVPFSDPVADGPTVAESHLRALDGGATVDSALEQIKRVRAAYPEVPIG   98 (278)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEE
T ss_conf             89885484899899999999999669999997999888566689999999999976986789999999840358987689


Q ss_pred             EEEEEEE-----CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEE
Q ss_conf             5678851-----2033676404776079997066421589998677649825998523334478998862014-028998
Q gi|254780975|r   67 CHLMISS-----IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMT  140 (224)
Q Consensus        67 vHLMv~~-----P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~  140 (224)
                      .=.+.+.     .++|++++.++|+|=+.+.=--.+.-....+.++++|...-.-+.|.|+-+.+..+....+ +|-+.+
T Consensus        99 lM~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~~i~~I~l~~ptt~~~ri~~I~~~s~GFiY~VS  178 (278)
T PRK13116         99 MLIYGNVPFTRGLDRFYQEFAEAGADSILLPDVPVREGAPFSAAAAAAGIDPIYIAPANASEKTLEGVSAASKGYIYAIS  178 (278)
T ss_pred             EEECCCHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf             98057288772799999999776975899469997888999999986576669993799959999999971897399986


Q ss_pred             EECCCCCC--CCCCH-HHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHC
Q ss_conf             30677653--32201-357789986543138652698158998-8999999679989997426637
Q gi|254780975|r  141 VNPGFGGQ--QLIES-TIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       141 V~PG~~Gq--~f~~~-~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      + .|-.|.  ...+. .-+.|+++|+.   .+.++.|-=||+. +.+.+....+||-+|+||++.+
T Consensus       179 ~-~GvTG~~~~~~~~~l~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~~~~aDGVIVGSAiVk  240 (278)
T PRK13116        179 R-DGVTGTERESSTDGLSAVVDNIKKF---DGAPILLGFGISSPQHVADAIAAGASGAITGSAITK  240 (278)
T ss_pred             C-CCCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf             3-5222688666678999999999845---799879981679899999998668999998779999


No 60 
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.64  E-value=8.5e-06  Score=57.36  Aligned_cols=188  Identities=18%  Similarity=0.202  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCC
Q ss_conf             99999999999659989999734263458434178999986412564168567885120336764047760799970664
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESS   96 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~   96 (224)
                      -+|.+-++...++|++.+++=--+...-.    -.+.-+.+++.+ ...++-+.|+|   .++-....|+|=  +|.-..
T Consensus       155 ~~l~~~Ve~AL~gGv~ivQlR~K~~~~~~----~l~~A~~l~~Lc-~~y~a~fIIND---rvDlAlav~ADG--VHLGQ~  224 (345)
T PRK02615        155 EDLLEVVEAALKAGVKLVQYRDKTGDDRE----RLEEAKQLKELC-KRYGALFIVND---RVDIALAVDADG--VHLGQE  224 (345)
T ss_pred             CCHHHHHHHHHHCCCCEEEEECCCCCHHH----HHHHHHHHHHHH-HHHCCEEEEEC---CHHHHHHCCCCE--EEECCC
T ss_conf             34999999999759988983058999999----999999999999-99599489819---699999749987--755888


Q ss_pred             CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             21589998677649825998523334478998862014028998306776533220135778998654313865269815
Q gi|254780975|r   97 PHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDG  176 (224)
Q Consensus        97 ~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG  176 (224)
                      +-+......+-..+.-.|++.  .++-+...-.-..+||+-+=.+-|-.+-..-.+-.++.++++++.   .++++..=|
T Consensus       225 Dlpi~~aR~llG~~~iIG~S~--h~~ee~~~A~~~gaDYig~Gpvf~T~TK~~~~p~Gl~~l~~~~~~---~~iPvvAIG  299 (345)
T PRK02615        225 DLPLAVARQLLGPEKIIGRST--TNPEELAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYARKE---ANIPWFAIG  299 (345)
T ss_pred             CCCHHHHHHHCCCCCEEEECC--CCHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCHHHHHHHHHH---CCCCEEEEC
T ss_conf             789999998739991899617--999999999863999799887742588888887899999999983---799999999


Q ss_pred             CCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             8998899999967998999742663789989999999999997
Q gi|254780975|r  177 GVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKS  219 (224)
Q Consensus       177 Gvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~~  219 (224)
                      |||.+|+..+.++|++.+.+=|+|+.++||.++++.|.+..+.
T Consensus       300 GI~~~N~~~v~~aGa~gvAVisAI~~A~DP~~aa~~ll~~l~~  342 (345)
T PRK02615        300 GIDKSNISEVLQAGADRVAVVRAIMNAEDPKQATQELLEQLSR  342 (345)
T ss_pred             CCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             9699999999985999999822855799999999999999730


No 61 
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.64  E-value=1e-05  Score=56.86  Aligned_cols=176  Identities=14%  Similarity=0.152  Sum_probs=122.9

Q ss_pred             HHHHHHHH-CCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCH
Q ss_conf             99999996-59989999734263458434178999986412564168567885120336764047760799970664215
Q gi|254780975|r   21 EEISNITK-AGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHI   99 (224)
Q Consensus        21 ~~i~~l~~-~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~   99 (224)
                      +.+....+ .|++|+|+==.||-+...- -..+.++.|++.++.|+.+===+. -..-++.+.++|+++|++-..+.+++
T Consensus        35 ~~~~~~~~~~Ga~~lHvVDLdgA~~g~~-~n~~~I~~i~~~~~~~iqvGGGIR-s~e~i~~~l~~G~~rViigT~a~~~~  112 (234)
T PRK13587         35 ESIAYYSQFECVNRIHIVDLIGAKAQHA-REFDYIKSLRRLTTKDIEVGGGIR-TKSQIMDYFAAGINYCIVGTKGIQDT  112 (234)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCCCC-CHHHHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHCCCCEEEECCCCCCCH
T ss_conf             9999999838998899997876468974-379999999843798679846547-59999999976899999888130286


Q ss_pred             HHHHHHHHHCCCEEEEEEEC------------C---CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf             89998677649825998523------------3---344789988620-1402899830677653322013577899865
Q gi|254780975|r  100 RRSLRTIHAMGKKTGVAINP------------E---TPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKA  163 (224)
Q Consensus       100 ~~~i~~i~~~g~k~Giai~p------------~---T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~  163 (224)
                      +-+-+.++..+.++-+++.-            .   ++.+.++.+-+. +..+++-.|+---.-|.++-+.++++.+   
T Consensus       113 ~~l~~~~~~f~~~Ivv~iD~~~~~v~~~GW~~~s~~~~~d~~~~~~~~g~~~il~TdI~rDGtl~G~n~el~~~i~~---  189 (234)
T PRK13587        113 DWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVK---  189 (234)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCEEEECCCCEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH---
T ss_conf             99999998666776871202385454457514258679999999974398789984026657455799999999997---


Q ss_pred             HHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             4313865269815899-8899999967998999742663789
Q gi|254780975|r  164 LIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       164 ~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                         ..++++.+-|||+ .+.+..|.+.|++-+|+|.||+...
T Consensus       190 ---~~~~pvIaSGGv~sl~Di~~L~~~gv~GvIvGkAlYeg~  228 (234)
T PRK13587        190 ---ATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQAS  228 (234)
T ss_pred             ---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             ---679999998998999999999988998999997501782


No 62 
>PRK13121 consensus
Probab=98.62  E-value=1.6e-05  Score=55.53  Aligned_cols=191  Identities=17%  Similarity=0.240  Sum_probs=130.1

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHC-CCCEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--78999986412-564168
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSY-SDSVFD   66 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~-t~~~~d   66 (224)
                      +.|=+.+.  |.....+.+..+.++|+|.+-+-+      +||--.         .++++  -+++++++|+. ++.|+=
T Consensus        19 li~y~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~~Piv   98 (265)
T PRK13121         19 LIPFITAGDPDPAKTVELMHALVEGGADVIELGVPFSDPMADGPVIQRASERALAHGVSLRQVLAMVKEFRETNQTTPVV   98 (265)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf             89887071899899999999999769999997898899776589999999999977998467799999831037999989


Q ss_pred             EEEEEEE-----CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEE
Q ss_conf             5678851-----2033676404776079997066421589998677649825998523334478998862014-028998
Q gi|254780975|r   67 CHLMISS-----IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMT  140 (224)
Q Consensus        67 vHLMv~~-----P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~  140 (224)
                      +=-+.+.     .++|++.+.++|+|=+.+.==-.+.-.+..+.++++|...-.-+.|.|+-+.++.+....+ +|-+++
T Consensus        99 lM~Y~N~i~~yG~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~~~gFiY~Vs  178 (265)
T PRK13121         99 LMGYANPIERMGYDAFAAAARAAGVDGVLVVDYPPEECEEFAAKMRAAGIDPIFLLAPTSTDERIAAVARVASGYVYYVS  178 (265)
T ss_pred             EEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf             86214599997199999999872987343489998999999999986599668995899989999999962898099975


Q ss_pred             EECCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHC
Q ss_conf             3067765--332201357789986543138652698158998-8999999679989997426637
Q gi|254780975|r  141 VNPGFGG--QQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       141 V~PG~~G--q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      +. |-.|  ..+.+..-+.++++|+.   .++++.|-=||+. +.+..+ ..+||-+|+||++.+
T Consensus       179 ~~-GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~~~~v-~~~ADGvIVGSaiV~  238 (265)
T PRK13121        179 LK-GVTGAATLDVSSVAAKLPAIRSH---VPLPVGVGFGIRDAATARAV-AEVADAVVIGSRLVQ  238 (265)
T ss_pred             CC-CCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHH-HHCCCEEEECHHHHH
T ss_conf             55-56677756628899999999854---79985997688989999999-811999998489999


No 63 
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.60  E-value=1.4e-05  Score=55.97  Aligned_cols=176  Identities=15%  Similarity=0.084  Sum_probs=119.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEEC
Q ss_conf             58899999999999659989999734263458434178999986412564168567885120336764047760799970
Q gi|254780975|r   14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHP   93 (224)
Q Consensus        14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~   93 (224)
                      .|+.+   ..+...+.|+|++|+==.|+.+- +..-..+.++.|++.+..|+.+===+.+ ...++.+.+.|++.|++-.
T Consensus        30 gdP~~---~ak~~~~~g~d~lhivDld~a~~-~~~~n~~~I~~i~~~~~ipi~vGGGIrs-~e~~~~ll~~GadkViigs  104 (232)
T TIGR03572        30 GDPVN---AARIYNAKGADELIVLDIDASKR-GREPLFELISNLAEECFMPLTVGGGIRS-LEDAKKLLSLGADKVSINT  104 (232)
T ss_pred             CCHHH---HHHHHHHCCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCEEEEECEEE-HHHHHHHHHCCCCEEEECH
T ss_conf             89999---99999986999999996876434-8821799999999972985899713303-8999999976996899345


Q ss_pred             CCCCCHHHHHHHHHHCCCE-EEEEEEC---------------C---CC--H-HHHHHHHH-HCCEEEEEEEECCCCCCCC
Q ss_conf             6642158999867764982-5998523---------------3---34--4-78998862-0140289983067765332
Q gi|254780975|r   94 ESSPHIRRSLRTIHAMGKK-TGVAINP---------------E---TP--V-AILEDVID-EIDMILIMTVNPGFGGQQL  150 (224)
Q Consensus        94 E~~~~~~~~i~~i~~~g~k-~Giai~p---------------~---T~--~-~~i~~~l~-~~D~vliM~V~PG~~Gq~f  150 (224)
                      .+.+++.-+-+.++..|.+ +-+++..               .   |.  + +.+..+.+ -+-.+++-.|+---..+.+
T Consensus       105 ~a~~~p~~~~~~~~~~G~q~ivvsiD~k~~~~~~~~~v~~~g~~~~~~~~~~~~i~~~~~~g~geii~tdI~~DG~~~G~  184 (232)
T TIGR03572       105 AALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGY  184 (232)
T ss_pred             HHHHCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf             45219357789999869945899999841677872799966776357987999999987359989999888576856768


Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHH-HCCCCEEEECHHH
Q ss_conf             20135778998654313865269815899-88999999-6799899974266
Q gi|254780975|r  151 IESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLV-QAGADLLVVGSSF  200 (224)
Q Consensus       151 ~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~-~~Gad~~V~Gsai  200 (224)
                      +-+.+++++   +   ..+.++.+-||++ .+.+.++. ..|++-+++||..
T Consensus       185 d~~l~~~i~---~---~~~~piiasGGi~~~~di~~l~~~~~~~gv~~gs~f  230 (232)
T TIGR03572       185 DLELIKTVS---D---AVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF  230 (232)
T ss_pred             CHHHHHHHH---H---HCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECC
T ss_conf             999999999---8---689999998898999999999985898199972114


No 64 
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.60  E-value=3.5e-05  Score=53.47  Aligned_cols=186  Identities=16%  Similarity=0.143  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHCCCCEEEE-EEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCC
Q ss_conf             999999999659989999-7342634584341789999864125641685678851203367640477607999706642
Q gi|254780975|r   19 LGEEISNITKAGAKQIHF-DVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSP   97 (224)
Q Consensus        19 l~~~i~~l~~~~~d~iHi-DImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~   97 (224)
                      ..+..+...+.|+|++|+ |+ |+.. .+-....+.++++.+.+..|+.+===+. -...++++..+|+|.|++-..+..
T Consensus        32 P~~~a~~~~~~gadel~ivDl-d~s~-~~~~~~~~~I~~i~~~~~~pi~vGGGIr-s~e~~~~ll~~GadkVvigs~a~~  108 (253)
T PRK02083         32 PVELAKRYDEEGADELVFLDI-TASS-EGRDTMKDVVERVAEQVFIPLTVGGGIR-SVEDARRLLRAGADKVSINSAAVA  108 (253)
T ss_pred             HHHHHHHHHHCCCCEEEEEEC-CCCC-CCCHHHHHHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHCCCCEEEECCHHHH
T ss_conf             999999999879998999956-2664-5774179999999986398778517621-389876898779878999984653


Q ss_pred             CHHHHHHHHHHCCCE-EEEEEEC------------------CCC---HHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHH
Q ss_conf             158999867764982-5998523------------------334---4789988620-1402899830677653322013
Q gi|254780975|r   98 HIRRSLRTIHAMGKK-TGVAINP------------------ETP---VAILEDVIDE-IDMILIMTVNPGFGGQQLIEST  154 (224)
Q Consensus        98 ~~~~~i~~i~~~g~k-~Giai~p------------------~T~---~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~  154 (224)
                      +++-+-+.++..|.+ .-+++..                  .|+   .+.++.+.+. +..+++-.|+---..+.++-+.
T Consensus       109 ~p~~i~~~~~~~G~q~Iv~siD~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~g~geil~tdI~rDG~~~G~d~~l  188 (253)
T PRK02083        109 DPELITELADRFGSQCIVVAIDAKRDGEPGRWEVFTHGGRKPTGIDAVEWAKEVQELGAGEILLTSMDQDGTKNGYDLEL  188 (253)
T ss_pred             CCCHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH
T ss_conf             85355788974698359999998873768718999807841255239999999875698789999885558667889999


Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCC-HHHHHH-HHHCCCCEEEECHHHH-CCCCHHHHHHHH
Q ss_conf             5778998654313865269815899-889999-9967998999742663-789989999999
Q gi|254780975|r  155 IPKIRQAKALIGKRSISLEVDGGVT-SRNIKS-LVQAGADLLVVGSSFF-NQKGEISYAKRL  213 (224)
Q Consensus       155 l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~-l~~~Gad~~V~Gsaif-~~~d~~~~~~~l  213 (224)
                      +++++.      ..++++-+-||++ .+.+.+ +...|++-+++||+++ +.-.+.+..+.|
T Consensus       189 ~~~i~~------~~~iPiI~sGGv~s~~di~~~l~~~~i~gv~~G~~~~~~~~sl~~~k~~L  244 (253)
T PRK02083        189 TRAVRD------AVSVPVIASGGAGNLEHFAEAFTEGGADAALAASVFHFGEITIGELKAYL  244 (253)
T ss_pred             HHHHHH------HCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHHHHHHH
T ss_conf             999997------57999999889999999999998679809987127776999999999999


No 65 
>PRK13114 consensus
Probab=98.59  E-value=5.1e-05  Score=52.39  Aligned_cols=191  Identities=19%  Similarity=0.199  Sum_probs=132.7

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHC-CCCEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--78999986412-564168
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSY-SDSVFD   66 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~-t~~~~d   66 (224)
                      +.|=+.+.  |.....+.++.+.++|+|.+-+-+      .||--.         .++++  -++.++.+|+. ++.|+=
T Consensus        15 li~yitaG~P~~~~t~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~rAL~~G~~l~~~f~~v~~~r~~~~~~Piv   94 (266)
T PRK13114         15 LVAFITGGDPTPGDTAANLDALVAGGADVIELGMPFTDPMADGPAIQAANLRSLAAGTTTADIFRIAAEFRQRHPEVPLV   94 (266)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf             89887071899899999999999769999997999888677689999999999986997999999999987418998879


Q ss_pred             EEEEEEE-----CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEE
Q ss_conf             5678851-----2033676404776079997066421589998677649825998523334478998862014-028998
Q gi|254780975|r   67 CHLMISS-----IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMT  140 (224)
Q Consensus        67 vHLMv~~-----P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~  140 (224)
                      +=-+.+.     +++|++.+.++|+|=+.+.==-.+.-.++...++++|...-.-+.|.|+-+.+..+....+ +|-+.+
T Consensus        95 lM~Y~N~i~~~G~~~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~gi~~I~liaPtt~~~Ri~~i~~~a~gFiY~vs  174 (266)
T PRK13114         95 LMGYANPMVRRGPDWFAAECKKAGVDGVICVDIPPEEDAELGPALRAAGIDPIRLATPTTDAARLPAVLEGASGFLYYVS  174 (266)
T ss_pred             EEEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             98630199986499999999974997798458997888999999997499726775699979999999973899589984


Q ss_pred             EECCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             3067765--33220135778998654313865269815899-88999999679989997426637
Q gi|254780975|r  141 VNPGFGG--QQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       141 V~PG~~G--q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      +. |-.|  +.+.+..-+.++++|+.   .+..+.|-=||+ .+.+..+.+ .||-+|+||++.+
T Consensus       175 ~~-GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~~~~~~~-~ADGvIVGSaiVk  234 (266)
T PRK13114        175 VA-GITGMQQAAQASIEAAVARIKAA---TDLPVAVGFGVRTPEQAAAIAR-VADGVVVGSAFVD  234 (266)
T ss_pred             CC-CCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHH-CCCEEEECHHHHH
T ss_conf             45-56677656658899999999970---7998699836698999999980-0999998199999


No 66 
>PRK13112 consensus
Probab=98.59  E-value=1.3e-05  Score=56.24  Aligned_cols=191  Identities=17%  Similarity=0.187  Sum_probs=131.5

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHH-CCCCEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--7899998641-2564168
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRS-YSDSVFD   66 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~-~t~~~~d   66 (224)
                      +.|=+.+.  |.....+.++.+.++|+|.+-+-|      .||--.         ..+++  .+++++.+|+ ..+.|+=
T Consensus        20 li~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~Piv   99 (279)
T PRK13112         20 LVTYFMGGDPDLETSLKIMKALPKAGADIIELGMPFSDPMADGPAIQAAGLRALKAGQTLAKTLYLAREFRKDDDTTPIV   99 (279)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf             89886073899789999999998779998997899898666579999999999976996889999999851348998879


Q ss_pred             EEEEEEE-----CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEE
Q ss_conf             5678851-----2033676404776079997066421589998677649825998523334478998862014-028998
Q gi|254780975|r   67 CHLMISS-----IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMT  140 (224)
Q Consensus        67 vHLMv~~-----P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~  140 (224)
                      +=-+.+.     .++|++++.++|+|=+.+.=--.+.-.++...++++|...-.-+.|.|+-+.+..+..... +|-+.+
T Consensus       100 lM~Y~N~i~~~G~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~~i~~I~lvaPtt~~eRi~~i~~~s~GFiY~Vs  179 (279)
T PRK13112        100 LMGYYNPIYIYGVERFLTDAKAAGVDGLIVVDLPPEMDAELCIPAMKAGINFIRLATPTTDDKRLPKVLANTSGFVYYVS  179 (279)
T ss_pred             EEEECHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf             98512499884799999999973998798469997888999999985783469982589989999999852788089983


Q ss_pred             EECCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             3067765--33220135778998654313865269815899-88999999679989997426637
Q gi|254780975|r  141 VNPGFGG--QQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       141 V~PG~~G--q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      + .|-.|  ..+.+...+.|+++|+.   .+.++.|-=||+ .+.+.. ...+||-+|+||++.+
T Consensus       180 ~-~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~~~~-~~~~aDGvIVGSAiVk  239 (279)
T PRK13112        180 M-TGITGSALADTSAVGEAVARIKRH---TDLPVCVGFGVKTPEQARA-IAAHADGVVVGTAIVN  239 (279)
T ss_pred             C-CCCCCCCCCCHHHHHHHHHHHHHH---CCCCCEEEECCCCHHHHHH-HHCCCCEEEECHHHHH
T ss_conf             5-666676645648899999999971---7898767835699999999-9725999998779999


No 67 
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.57  E-value=1.6e-05  Score=55.57  Aligned_cols=178  Identities=15%  Similarity=0.168  Sum_probs=121.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEEC
Q ss_conf             58899999999999659989999734263458434178999986412564168567885120336764047760799970
Q gi|254780975|r   14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHP   93 (224)
Q Consensus        14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~   93 (224)
                      .|+.++.+   ...+.|++++|+==.|+.+  +-.-..+.++++++.+..|+++===+.+. .-++.+..+|++.|++-.
T Consensus        29 ~dP~~~a~---~~~~~Ga~~lhvvDLdaa~--g~~~N~~~I~~i~~~~~~piqvGGGIrs~-e~~~~~l~~Ga~kViigS  102 (231)
T PRK13586         29 GDPLKIAE---ELYNEGYDSIHVVDLDAAE--GKGDNEEYIKRICKIGFSWIQVGGGIRDV-EKAERLLSYDCSAIVMST  102 (231)
T ss_pred             CCHHHHHH---HHHHCCCCEEEEEECCCCC--CCCCHHHHHHHHHHHCCCCEEEECCCCCH-HHHHHHHHCCCCEEEECH
T ss_conf             89999999---9998799989999671568--99843999999997459857985671769-999999977998899768


Q ss_pred             CCCCCHHHHHHHHHHCCC-EEEEEEE--CC----------C---CHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHH
Q ss_conf             664215899986776498-2599852--33----------3---44789988620-140289983067765332201357
Q gi|254780975|r   94 ESSPHIRRSLRTIHAMGK-KTGVAIN--PE----------T---PVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIP  156 (224)
Q Consensus        94 E~~~~~~~~i~~i~~~g~-k~Giai~--p~----------T---~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~  156 (224)
                      .+.++++.+.+.++..|. ++-+++.  ..          +   ..+.+..+.+. +-.+++..|+---..|.++.+.++
T Consensus       103 ~a~~np~~~~~~~~~~G~~~iv~siD~~~~~~v~~~Gw~~~~~~~~~~i~~~~~~g~~~ii~TdI~~DGt~~G~d~~l~~  182 (231)
T PRK13586        103 LPFTNPDTFRRIVAGIGENRVLVSVDYDDRKYVLIKGWKEKSMKVEDAISHVNSLESLGVIFTYVCNEGTKNGIDNNVKR  182 (231)
T ss_pred             HHHHCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHCCCCCCHHHHH
T ss_conf             88769599999999849966899999758968998487268866999999999759988999764511203689989999


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             78998654313865269815899-8899999967998999742663789
Q gi|254780975|r  157 KIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       157 kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      +++..+      ...+ +-|||+ .+.+.++.+.|++-+++|+|+|...
T Consensus       183 ~i~~~~------~~~i-~aGGi~s~~Di~~L~~~G~~gaivG~Aly~G~  224 (231)
T PRK13586        183 YVKLVK------GEKE-YAGGIGSIQDLQKLKKMGFDYAIVGMSFYAGV  224 (231)
T ss_pred             HHHHCC------CCCE-EECCCCCHHHHHHHHHCCCCEEEEEHHHHCCC
T ss_conf             998718------9959-98688999999999867998899997886882


No 68 
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.57  E-value=3.8e-05  Score=53.18  Aligned_cols=209  Identities=17%  Similarity=0.243  Sum_probs=141.9

Q ss_pred             EECHHHHCCC--HHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHH-CCCCEE
Q ss_conf             8817063258--89999999999965998999973------426345---------84341--7899998641-256416
Q gi|254780975|r    6 QIVPSILAAD--FSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRS-YSDSVF   65 (224)
Q Consensus         6 ~IspSil~~d--~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~-~t~~~~   65 (224)
                      -+.|=+.+.|  .-...+.++.|.++|+|.|-+-+      .||-..         .+.+.  -+++++.+|+ .++.|+
T Consensus        18 a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pi   97 (265)
T COG0159          18 ALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPI   97 (265)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf             74888948899989999999999867988899668888867668899998999997799889999999999861899988


Q ss_pred             EEEEEEEEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEE
Q ss_conf             856788512------03367640477607999706642158999867764982599852333447899886201-40289
Q gi|254780975|r   66 DCHLMISSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEI-DMILI  138 (224)
Q Consensus        66 dvHLMv~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~-D~vli  138 (224)
                      =+ |+--||      ++|++.+.++|+|-+.+.==-.+...++...++++|..+-.-..|.|+-+.++.+.... .+|-+
T Consensus        98 vl-m~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~  176 (265)
T COG0159          98 VL-MTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYY  176 (265)
T ss_pred             EE-EEECCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEE
T ss_conf             99-87011887735999999999759987985789866777899999976986798869999989999999747985899


Q ss_pred             EEEEC--CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCH---HHHHHH
Q ss_conf             98306--776533220135778998654313865269815899-889999996799899974266378998---999999
Q gi|254780975|r  139 MTVNP--GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGE---ISYAKR  212 (224)
Q Consensus       139 M~V~P--G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~---~~~~~~  212 (224)
                      .++.+  |-..+.. ..+-+.++.+|++.   +..+.|-=||+ .+++..+.++ ||-+|+||++.+.-..   .+..+.
T Consensus       177 vs~~GvTG~~~~~~-~~~~~~v~~vr~~~---~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~~i~~~~~~~~~~~  251 (265)
T COG0159         177 VSRMGVTGARNPVS-ADVKELVKRVRKYT---DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVKIIEEGLDEEALEE  251 (265)
T ss_pred             EECCCCCCCCCCCC-HHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHH-CCEEEECHHHHHHHHHCCCHHHHHH
T ss_conf             96666667776530-46999999999744---8973874486999999999976-8857973999999995551446999


Q ss_pred             HHHHHHHH
Q ss_conf             99999978
Q gi|254780975|r  213 LNDLKKSA  220 (224)
Q Consensus       213 l~~l~~~a  220 (224)
                      +..+.+.-
T Consensus       252 ~~~l~~~l  259 (265)
T COG0159         252 LRALVKEL  259 (265)
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 69 
>PRK05211 consensus
Probab=98.55  E-value=2.7e-05  Score=54.13  Aligned_cols=187  Identities=18%  Similarity=0.144  Sum_probs=127.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEEC
Q ss_conf             58899999999999659989999734263458434178999986412564168567885120336764047760799970
Q gi|254780975|r   14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHP   93 (224)
Q Consensus        14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~   93 (224)
                      .|+.+   ..+...+.|+|+||+==.|+.+- +-....++++++.+.+..|+.+===+.+ ..-++.+.++|+|.|++-.
T Consensus        21 gDP~~---~ak~~~~~gadelhivDld~a~~-g~~~n~~~I~~i~~~~~~Pl~vGGGIrs-~~~i~~ll~~GadkViigs   95 (248)
T PRK05211         21 GDIVP---LAKRYAEEGADELVFYDITASSD-GRVVDKSWVSRVAEVIDIPFCVAGGIKS-VEDAREILSFGADKISINS   95 (248)
T ss_pred             CCHHH---HHHHHHHCCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHCCCCEEEECC
T ss_conf             89999---99999986999899997867767-8721499999999767985896278013-8999999987998899897


Q ss_pred             CCCCCHHHHHHHHHHCCCE-EEEEEEC----------------------CCC---HHHHHHHHHH-CCEEEEEEEECCCC
Q ss_conf             6642158999867764982-5998523----------------------334---4789988620-14028998306776
Q gi|254780975|r   94 ESSPHIRRSLRTIHAMGKK-TGVAINP----------------------ETP---VAILEDVIDE-IDMILIMTVNPGFG  146 (224)
Q Consensus        94 E~~~~~~~~i~~i~~~g~k-~Giai~p----------------------~T~---~~~i~~~l~~-~D~vliM~V~PG~~  146 (224)
                      .+.++|+-+-+.++..|.+ +-+++..                      .|.   +++++.+.+. +-.+++=+|+---.
T Consensus        96 ~a~~np~li~~~~~~fG~q~IvvsiD~~~~~~~~~~~v~~~~g~~~~~~~t~~~~~d~i~~~~~~G~geIl~t~IdrDG~  175 (248)
T PRK05211         96 PALADPTLITRLADRFGVQCIVVGIDSWFDAETGKYQVYQYTGDESRTKATQWETLDWVKEVQKRGAGEIVLNMMNQDGV  175 (248)
T ss_pred             HHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             67619618999998579936999997102555785799982586565304773699999999975986699989878997


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHH-HHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             53322013577899865431386526981589-9889999-99679989997426637899899999
Q gi|254780975|r  147 GQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKS-LVQAGADLLVVGSSFFNQKGEISYAK  211 (224)
Q Consensus       147 Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~-l~~~Gad~~V~Gsaif~~~d~~~~~~  211 (224)
                      .+.++-+.++++.+      ..++++-+=||+ +.+.+.+ +.+.|++-+++||+++...-....++
T Consensus       176 ~~G~dl~l~~~i~~------~~~iPvIasGGv~s~~di~~~~~~~~~~gvi~gs~~~~~~i~l~e~k  236 (248)
T PRK05211        176 RNGYDLAQLKKVRA------ICHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELK  236 (248)
T ss_pred             CCCCCHHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHH
T ss_conf             27889999999997------46999999888899999999998679841330488888999999999


No 70 
>PRK00830 consensus
Probab=98.54  E-value=5.2e-05  Score=52.33  Aligned_cols=188  Identities=19%  Similarity=0.099  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCC
Q ss_conf             99999999999659989999734263458434178999986412564168567885120336764047760799970664
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESS   96 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~   96 (224)
                      .+-.+..+...+.|+|+||+==.||.+-. -.-..+.++++.+.+..|+.+===+.+ ...++.+.++|+|.|++-..+.
T Consensus        34 gdP~~~ak~~~~~gadelhivDld~a~~g-~~~~~~~I~~i~~~~~~pi~vGGGIrs-~e~~~~ll~~GadkVvIgS~a~  111 (273)
T PRK00830         34 GDPVELAKRYYEDGADELVFLDITASHEG-RATMIDVIERTAEEVFIPLTVGGGIRS-IEDIRQILRAGADKVSVNTAAV  111 (273)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEEEECCCCC-CCCHHHHHHHHHHHCCCCEEEECCEEE-CCCHHHHHHCCCCEEECHHHHH
T ss_conf             89999999999879998999953246468-842799999999866995896088437-7328999976986398379898


Q ss_pred             CCHHHHHHHHHHCCCE-EEEEEEC----------------------------------CCC---HHHHHHHHHH-CCEEE
Q ss_conf             2158999867764982-5998523----------------------------------334---4789988620-14028
Q gi|254780975|r   97 PHIRRSLRTIHAMGKK-TGVAINP----------------------------------ETP---VAILEDVIDE-IDMIL  137 (224)
Q Consensus        97 ~~~~~~i~~i~~~g~k-~Giai~p----------------------------------~T~---~~~i~~~l~~-~D~vl  137 (224)
                      ++|+-+-+.++..|.+ +-+++..                                  .|.   ++.+..+-+. +-.++
T Consensus       112 ~np~~v~~~~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~g~~~w~~v~~~g~~~~t~~~~~~~~~~~~~~G~geil  191 (273)
T PRK00830        112 KNPEFIREASDIFGSQCIVVAIDCKRNYNPKDNPDKTIVELEDGTCAWYEVVIYGGREFTGIDAVQWAKKVEELGAGEIL  191 (273)
T ss_pred             HCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             59077899998769905999998433766545676214540478742289997078033786799999999864988688


Q ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHH-HCCCCEEEECHHHH-CCCCHHHHHHH
Q ss_conf             998306776533220135778998654313865269815899-88999999-67998999742663-78998999999
Q gi|254780975|r  138 IMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLV-QAGADLLVVGSSFF-NQKGEISYAKR  212 (224)
Q Consensus       138 iM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~-~~Gad~~V~Gsaif-~~~d~~~~~~~  212 (224)
                      +=+|+---..+.++-+.++++.+      ..++++.+=||++ .+.+.++. ..+++.+++||++. +.-.+.+..+.
T Consensus       192 ~tdI~rDGt~~G~d~~l~~~i~~------~~~iPvIasGGv~~~~di~~~~~~~~~~~v~~gs~f~~~~~si~e~k~~  263 (273)
T PRK00830        192 LTSMDRDGTKDGYDIPITKKISE------EVDIPVIASGGVGNPEHIYEGFSDGKADAALAASIFHFNEYSIREVKEY  263 (273)
T ss_pred             EEEECCCCCCCCCCHHHHHHHHH------CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHCCCCCHHHHHHH
T ss_conf             87875779656889699999986------3799889988999999999999838986887700566699799999999


No 71 
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.53  E-value=1.7e-05  Score=55.49  Aligned_cols=180  Identities=16%  Similarity=0.099  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCC
Q ss_conf             99999999996599899997342634584341789999864125641685678851203367640477607999706642
Q gi|254780975|r   18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSP   97 (224)
Q Consensus        18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~   97 (224)
                      +-.+..+...+.|+|++|+==.|+.+ .+-....+.+++|.+.+..|+.+===+.+ ...++++..+|+|.|++..-+..
T Consensus        31 dP~~~ak~f~~~GadelhivDld~a~-~g~~~n~~~I~~I~~~~~ipi~vGGGIrs-~e~~~~ll~~GadkViigs~a~~  108 (253)
T PRK01033         31 DPINAVRIFNEKEADELIVLDIDASR-KGREPNYELIENLASECFMPLCYGGGIKT-VEQAKRIFSLGVEKVSISTAALE  108 (253)
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHCCCCEEEECCHHHH
T ss_conf             99999999998799989999474542-48801699999999876998898688121-68889998679866999987863


Q ss_pred             CHHHHHHHHHHCCCE-EEEEEEC--------------C---CC---HHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHH
Q ss_conf             158999867764982-5998523--------------3---34---4789988620-14028998306776533220135
Q gi|254780975|r   98 HIRRSLRTIHAMGKK-TGVAINP--------------E---TP---VAILEDVIDE-IDMILIMTVNPGFGGQQLIESTI  155 (224)
Q Consensus        98 ~~~~~i~~i~~~g~k-~Giai~p--------------~---T~---~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l  155 (224)
                      +++-+-+.++..|.+ +-+++..              .   |.   .+.+..+.+. +..+++=.|+---..+.++-+.+
T Consensus       109 ~p~~i~~~~~~fG~q~IvvsiD~k~~~~~~~~v~~~g~~~~t~~~~~~~~~~~~~~g~geil~TdI~rDGt~~G~d~~l~  188 (253)
T PRK01033        109 DPKLITEAAEIYGSQSVVVSIDVKKRLFGRYDVYTHNGTKKTGLDPVEFAKQAEELGAGEIVLNSIDRDGVMKGYDLELI  188 (253)
T ss_pred             CCHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHH
T ss_conf             74165789987799769999998248778347898679536785589999998746977999987848897668799999


Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCC-HHHHHHH-HHCCCCEEEECHH-HHCCCC
Q ss_conf             778998654313865269815899-8899999-9679989997426-637899
Q gi|254780975|r  156 PKIRQAKALIGKRSISLEVDGGVT-SRNIKSL-VQAGADLLVVGSS-FFNQKG  205 (224)
Q Consensus       156 ~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l-~~~Gad~~V~Gsa-if~~~d  205 (224)
                      +++++      ..++++.+-||++ .+.+.++ ...|++-+..||. .|+.+.
T Consensus       189 ~~i~~------~~~ipiIasGGi~s~~di~~l~~~~~v~gv~~gs~F~f~g~~  235 (253)
T PRK01033        189 KKISS------AVKIPVTALGGAGSLDDIADLIQEAGASAAAAGSLFVFKGPH  235 (253)
T ss_pred             HHHHH------HCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEEEEECCCC
T ss_conf             99998------789999997898999999999986797399783168984798


No 72 
>PRK13138 consensus
Probab=98.52  E-value=8.6e-05  Score=50.93  Aligned_cols=188  Identities=11%  Similarity=0.176  Sum_probs=130.9

Q ss_pred             ECHHHHCCC--HHHHHHHHHHHHHCCCCEEEEEE------ECCEECC---------CCCC--CHHHHHHHHH-CCCCEEE
Q ss_conf             817063258--89999999999965998999973------4263458---------4341--7899998641-2564168
Q gi|254780975|r    7 IVPSILAAD--FSRLGEEISNITKAGAKQIHFDV------MDGCFVP---------NISF--GADVIRSLRS-YSDSVFD   66 (224)
Q Consensus         7 IspSil~~d--~~~l~~~i~~l~~~~~d~iHiDI------mDg~fvp---------n~~~--~~~~i~~i~~-~t~~~~d   66 (224)
                      +.|=+.+.+  +-...+.++.+.++|+|.+-+-+      +||--..         .+++  -+++++++|+ .++.|+=
T Consensus        15 lI~yitaG~P~~e~t~~~~~~l~~~GadiiEiGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~piv   94 (264)
T PRK13138         15 FIPYISLGDPDYDSCIIWADALIRGGAGILELGIPFSDPVADGPVIQKAFKRALAHPFSMDKILEITAEIHKLHPEIPLV   94 (264)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEE
T ss_conf             78886787999899999999999779998997998888666589999999999977990889744677603358988889


Q ss_pred             EEEEEE-E------CCHHHHHHCCCCCCEEEEE---CCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-E
Q ss_conf             567885-1------2033676404776079997---066421589998677649825998523334478998862014-0
Q gi|254780975|r   67 CHLMIS-S------IDSHINIIADAGCDIITFH---PESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-M  135 (224)
Q Consensus        67 vHLMv~-~------P~~~i~~~~~~g~d~i~~H---~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~  135 (224)
                      +  |.= |      .++|++.+.++|+|=+.++   +|. ++..+....++++|...-.-+.|.|+-+.+..+....+ +
T Consensus        95 l--M~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~e~-~E~~~~~~~~~~~~i~~I~liaPtt~~~Ri~~i~~~s~gF  171 (264)
T PRK13138         95 Y--LTYFNPLFSMGLEAFTERAKNSGIQGLIIPDLPFDT-PEAEEFFSQLERKKIDFIHLVTPATTEDRIQSMKSFASGF  171 (264)
T ss_pred             E--EEEHHHHHHHCHHHHHHHHHHCCCCEEECCCCCCCC-HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
T ss_conf             7--521238988489999999987697758536898650-3359999999986998675217999899999999738880


Q ss_pred             EEEEEEE--CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             2899830--67765332201357789986543138652698158998899999967998999742663
Q gi|254780975|r  136 ILIMTVN--PGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       136 vliM~V~--PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif  201 (224)
                      |-++++.  -|.. +.+....-+.++++|+.   .+.++.|-=||+...-......+||-+|+||++.
T Consensus       172 iY~Vs~~GvTG~~-~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~~~~~~~~ADGvIVGSaiv  235 (264)
T PRK13138        172 IYYVTSYGVTGER-GAIASGLEDRIQMVRKI---VGLPVCAGFGISTADQAKEISTYADGVIIGSAVQ  235 (264)
T ss_pred             EEEEECCCCCCCC-CCCCHHHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHCCCEEEECHHHH
T ss_conf             8987545667876-55537699999999974---3898388606798999999983499999819999


No 73 
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.51  E-value=9.6e-06  Score=57.01  Aligned_cols=145  Identities=19%  Similarity=0.310  Sum_probs=107.8

Q ss_pred             HHHHHHHHCCCCEEEEEEEEEEC----CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHH
Q ss_conf             99998641256416856788512----03367640477607999706642158999867764982599852333447899
Q gi|254780975|r   52 DVIRSLRSYSDSVFDCHLMISSI----DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILE  127 (224)
Q Consensus        52 ~~i~~i~~~t~~~~dvHLMv~~P----~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~  127 (224)
                      +.++++|+.++.|+-+.|++..+    +.+++.+.+.|++.|+++..   .+.+.++++|+.|.++...   -++.+..+
T Consensus        43 ~~i~~~~~~~~~pfgvnl~~~~~~~~~~~~~~~~~~~~v~~v~~~~g---~p~~~v~~l~~~g~~v~~~---v~s~~~A~  116 (236)
T cd04730          43 AEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG---PPAEVVERLKAAGIKVIPT---VTSVEEAR  116 (236)
T ss_pred             HHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCC---CCHHHHHHHHHCCCEEEEE---CCCHHHHH
T ss_conf             99999997469972443324677636899999999769999998798---9789999999829989995---89899999


Q ss_pred             HHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             8862-0140289983067765332201357789986543138652698158998-8999999679989997426637899
Q gi|254780975|r  128 DVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       128 ~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      ...+ -+|.|.+-+.+.|--...+...++..+.++++..   ++.+.++|||.. +.+......|||-+..||...-.++
T Consensus       117 ~a~~~GaD~iv~qG~eAGGH~g~~~~~~~~lv~~v~~~~---~ipviaAGGI~~g~~i~aal~lGA~gV~~GTrfl~t~E  193 (236)
T cd04730         117 KAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV---DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEE  193 (236)
T ss_pred             HHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH---CCCEEEECCCCCHHHHHHHHHHCCCEEEECCHHHHCCC
T ss_conf             999818998999777777788987555677999999982---98689654627789999999808979995538570845


No 74 
>PRK13115 consensus
Probab=98.49  E-value=4.8e-05  Score=52.58  Aligned_cols=206  Identities=14%  Similarity=0.183  Sum_probs=137.9

Q ss_pred             EECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEE
Q ss_conf             881706325--889999999999965998999973------426345---------84341--78999986412564168
Q gi|254780975|r    6 QIVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFD   66 (224)
Q Consensus         6 ~IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~d   66 (224)
                      -+.|=+.+.  |+....+.+..+.++|+|.+-+-|      .||--.         .++++  -++.++.+++ ++.|+=
T Consensus        25 alI~yitaG~P~~e~t~~~i~~l~~~GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~~G~~~~~~f~~v~~~~~-~~~Piv  103 (269)
T PRK13115         25 ALIGYLPAGFPDVDTSIAAMTALVESGCDIVEVGLPYSDPVMDGPVIQAATEAALRGGVRVRDVFRAVEAISA-AGGRAL  103 (269)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCCCEE
T ss_conf             4887852738998999999999996699999979998885666899999999999779959999999998415-799888


Q ss_pred             EEEEE-EEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEE
Q ss_conf             56788-512------033676404776079997066421589998677649825998523334478998862014-0289
Q gi|254780975|r   67 CHLMI-SSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILI  138 (224)
Q Consensus        67 vHLMv-~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vli  138 (224)
                        ||. -||      ++|++.+.++|+|=+++.==-.++-....+.++++|...-.-+.|.|+-+.+..+..... +|-+
T Consensus       104 --lM~Y~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~LvaPtt~~eRi~~i~~~a~GFIY~  181 (269)
T PRK13115        104 --VMTYWNPVLRYGVDRFARDLAAAGGAGLITPDLIPDEAGEWLAASERHGLDRIFLVAPSSTPERLAETVEASRGFVYA  181 (269)
T ss_pred             --EHHHHHHHHHHCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHCCCCCEEE
T ss_conf             --547548998736999999999739980764789978999999999865812899858999889999998448880899


Q ss_pred             EEEECCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHC---CCCHHHHHHH
Q ss_conf             983067765--3322013577899865431386526981589-988999999679989997426637---8998999999
Q gi|254780975|r  139 MTVNPGFGG--QQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFN---QKGEISYAKR  212 (224)
Q Consensus       139 M~V~PG~~G--q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~---~~d~~~~~~~  212 (224)
                      .++ .|-.|  ..+.+...+.++++|+.   .+.++.|-=|| +.+.+..+.+ .||.+|+||++.+   ..+..+..+-
T Consensus       182 Vs~-~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~~~~~~~-~aDGvIVGSa~V~~i~~~g~~~v~~~  256 (269)
T PRK13115        182 AST-MGVTGARDAVSSAAPELVARVRAA---SDIPVCVGLGVSSAAQAAEIAG-YADGVIVGSALVSALLDGGLPAVRAL  256 (269)
T ss_pred             EEC-CCCCCCCCCCCHHHHHHHHHHHHH---CCCCCEEECCCCCHHHHHHHHH-HCCEEEECHHHHHHHHHCCHHHHHHH
T ss_conf             754-545677644417799999999971---7998179727899999999980-29999986899999997597999999


Q ss_pred             HHHHHHH
Q ss_conf             9999997
Q gi|254780975|r  213 LNDLKKS  219 (224)
Q Consensus       213 l~~l~~~  219 (224)
                      +++|+..
T Consensus       257 ~~el~~~  263 (269)
T PRK13115        257 TEELAAG  263 (269)
T ss_pred             HHHHHHH
T ss_conf             9999999


No 75 
>PRK13133 consensus
Probab=98.49  E-value=5.4e-05  Score=52.21  Aligned_cols=206  Identities=15%  Similarity=0.146  Sum_probs=136.1

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHH-----CCC
Q ss_conf             81706325--889999999999965998999973------426345---------84341--7899998641-----256
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRS-----YSD   62 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~-----~t~   62 (224)
                      +.|=+.+.  |.....+.++.+.++|+|.+-+-|      .||--.         ..+++  -+++++++|+     .++
T Consensus        17 li~yitaG~P~~~~t~~~i~~l~~~GaDiiElGiPFSDP~ADGpvIQ~A~~rAL~~G~~~~~~~~~~~~~r~~~~~~~~~   96 (267)
T PRK13133         17 LIAYYMPEFPVAGATLPVLEALQESGADIIELGIPYSDPIGDGPVIQNAAHTAIRNGVSVRSLLELVRKARNGEGCRKIT   96 (267)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             78785686999899999999999759998997899888666689999999999986998999999999997302434668


Q ss_pred             CEEEEEEEEE-E------CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-
Q ss_conf             4168567885-1------2033676404776079997066421589998677649825998523334478998862014-
Q gi|254780975|r   63 SVFDCHLMIS-S------IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-  134 (224)
Q Consensus        63 ~~~dvHLMv~-~------P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-  134 (224)
                      .|+-+  |.= |      .++|++.+.++|+|-++++==-.+.-......++++|...-.-+.|.|+-+.+..+....+ 
T Consensus        97 ~Pivl--MtY~N~i~~yG~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~eRi~~i~~~s~G  174 (267)
T PRK13133         97 VPILL--MGYCNPLIAYGGDCFLADAVKAGVDGLLIPDLPPEEAIDFLERAKNFGLTVVFLISPVTPPERIEFIDSLSTD  174 (267)
T ss_pred             CCEEE--HHHHHHHHHHCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf             77871--5645799984779999999986987887789996888999999984698602442899999999999842789


Q ss_pred             EEEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHH----CC
Q ss_conf             02899830677653------3220135778998654313865269815899-8899999967998999742663----78
Q gi|254780975|r  135 MILIMTVNPGFGGQ------QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFF----NQ  203 (224)
Q Consensus       135 ~vliM~V~PG~~Gq------~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif----~~  203 (224)
                      +|-++++ .|-.|.      .+....-+.++.+|+.   .+.++.|-=||+ .+.+..+.+. ||.+|+||++.    ++
T Consensus       175 FiY~vs~-~GvTG~~~~~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~~~~i~~~-ADGvIVGSaiV~~i~~~  249 (267)
T PRK13133        175 FSYCLAV-NATTGTAKLSDAGTEAAVDEYLKRVRQH---TKKKFVVGFGIKDRERVEHMWEL-ADGAVVGTALLQHIAGA  249 (267)
T ss_pred             CEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHHH-CCEEEECHHHHHHHHHC
T ss_conf             5799980-0134677555542678999999999971---89987996687999999999822-99999878999999837


Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             9989999999999997
Q gi|254780975|r  204 KGEISYAKRLNDLKKS  219 (224)
Q Consensus       204 ~d~~~~~~~l~~l~~~  219 (224)
                      .++.+..+...++.++
T Consensus       250 ~~~~e~~~~~~~f~~~  265 (267)
T PRK13133        250 GTPQETARLAGEFWQS  265 (267)
T ss_pred             CCHHHHHHHHHHHHHH
T ss_conf             9968999999999986


No 76 
>PRK13123 consensus
Probab=98.49  E-value=7.1e-05  Score=51.46  Aligned_cols=206  Identities=17%  Similarity=0.279  Sum_probs=137.4

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCCCHHHHHHHHH-CCCCEEEEE
Q ss_conf             81706325--889999999999965998999973------426345---------843417899998641-256416856
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISFGADVIRSLRS-YSDSVFDCH   68 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~~~~~i~~i~~-~t~~~~dvH   68 (224)
                      +.|=+.+.  |.-...+.++.+.++|+|.+-+-|      +||--.         .++++. ..++.+++ .++.|+  =
T Consensus        17 li~yitaG~P~~~~~~~~i~~l~~~GaDiiElGiPFSDPvADGPvIq~A~~rAL~~G~~~~-~~~~~~~~~~~~~Pi--v   93 (256)
T PRK13123         17 FVPYIMAGDGGLDGLKETIRFLEEAGVSAIEIGIPFSDPVADGPVIQLAGLRALASGVSLK-AILQALIEKETQIPL--V   93 (256)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHH-HHHHHHHHCCCCCCE--E
T ss_conf             8888618689978999999999976999999789988866657999998999986799699-999887630579988--9


Q ss_pred             EEEE-EC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEE
Q ss_conf             7885-12------033676404776079997066421589998677649825998523334478998862014-028998
Q gi|254780975|r   69 LMIS-SI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMT  140 (224)
Q Consensus        69 LMv~-~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~  140 (224)
                      ||.= ||      ++|++.+.++|+|=+.++=--.+.-......++++|...-.-+.|.|+.+.+..+....+ +|-+.+
T Consensus        94 lMtY~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~liaPtt~~~Ri~~i~~~a~GFiY~Vs  173 (256)
T PRK13123         94 IMTYINPVFQYGIERFVEDLAETGVKGLIIPDLPYEHQDFIAPLLRDTDIALIPLVSLTSPIERQKEIIKEAEGFIYAVA  173 (256)
T ss_pred             EEEHHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf             74042589871899999999974997897379996789999999997699778640899938899999860788489974


Q ss_pred             EECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHC---CCCHHHHHHHHH
Q ss_conf             30677653--3220135778998654313865269815899-88999999679989997426637---899899999999
Q gi|254780975|r  141 VNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFN---QKGEISYAKRLN  214 (224)
Q Consensus       141 V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~---~~d~~~~~~~l~  214 (224)
                      +. |-.|.  .+.+..-+.++++|+.   .+.++.|-=||+ .+.++.+.+ .+|-+|+||++.+   .....+..+-++
T Consensus       174 ~~-GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~~~-~aDGvIVGSaiv~~i~~~~~~ei~~fi~  248 (256)
T PRK13123        174 VN-GVTGKRGNYRDDLDSHLEKLKSI---AHIPVLAGFGISTLEDVERFNA-VCDGVIVGSKIVELLHEGKEEEICEFIQ  248 (256)
T ss_pred             CC-CCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHH-HCCEEEEHHHHHHHHHHCCHHHHHHHHH
T ss_conf             45-56676533338899999999856---8998799768899999999971-3999997299999999779899999999


Q ss_pred             HHHHHH
Q ss_conf             999978
Q gi|254780975|r  215 DLKKSA  220 (224)
Q Consensus       215 ~l~~~a  220 (224)
                      +|++..
T Consensus       249 ~~k~~~  254 (256)
T PRK13123        249 AAKQKE  254 (256)
T ss_pred             HHHHHH
T ss_conf             999874


No 77 
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.47  E-value=0.00016  Score=49.24  Aligned_cols=180  Identities=16%  Similarity=0.187  Sum_probs=130.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEEC
Q ss_conf             58899999999999659989999734263458434178999986412564168567885120336764047760799970
Q gi|254780975|r   14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHP   93 (224)
Q Consensus        14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~   93 (224)
                      -|+...   .+...+.|+.|+|+==.||-|.+ -.-..+.+++|.+.++.|+.+-== -+-.+.++.+.++|++++++-.
T Consensus        31 ~~P~~~---a~~~~~~Ga~~lHlVDLdgA~~g-~~~n~~~i~~i~~~~~~~vQvGGG-IRs~~~v~~ll~~G~~rViiGt  105 (241)
T COG0106          31 DDPLEV---AKKWSDQGAEWLHLVDLDGAKAG-GPRNLEAIKEILEATDVPVQVGGG-IRSLEDVEALLDAGVARVIIGT  105 (241)
T ss_pred             CCHHHH---HHHHHHCCCCEEEEEECCCCCCC-CCCCHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHCCCCEEEEEC
T ss_conf             998999---99999809958988626632158-755499999999857997784087-6789999999987998899803


Q ss_pred             CCCCCHHHHHHHHHHCCCEEEEEEECC---------------CCHHHHHHHHHH-CCEEEEEEEE-CCCCCCCCCCHHHH
Q ss_conf             664215899986776498259985233---------------344789988620-1402899830-67765332201357
Q gi|254780975|r   94 ESSPHIRRSLRTIHAMGKKTGVAINPE---------------TPVAILEDVIDE-IDMILIMTVN-PGFGGQQLIESTIP  156 (224)
Q Consensus        94 E~~~~~~~~i~~i~~~g~k~Giai~p~---------------T~~~~i~~~l~~-~D~vliM~V~-PG~~Gq~f~~~~l~  156 (224)
                      -+..+|+.+.+++++.|-++-++|...               ++.+..+.|.+. +..+++--+. -|-- +..+...+ 
T Consensus       106 ~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl-~G~n~~l~-  183 (241)
T COG0106         106 AAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTL-SGPNVDLV-  183 (241)
T ss_pred             CEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCC-CCCCHHHH-
T ss_conf             1216999999999985982899997148853204610125678999999998578776999851446645-77787999-


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHC-CCCEEEECHHHHCCCC
Q ss_conf             78998654313865269815899-8899999967-9989997426637899
Q gi|254780975|r  157 KIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQA-GADLLVVGSSFFNQKG  205 (224)
Q Consensus       157 kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~-Gad~~V~Gsaif~~~d  205 (224)
                        +++.+.   .++++..-|||+ .+.+..+.+. |+.-+++|+|++...-
T Consensus       184 --~~l~~~---~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~  229 (241)
T COG0106         184 --KELAEA---VDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKF  229 (241)
T ss_pred             --HHHHHH---HCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHHCCCC
T ss_conf             --999998---2767898668687999999985579728998668964897


No 78 
>PRK13120 consensus
Probab=98.44  E-value=5.3e-05  Score=52.28  Aligned_cols=189  Identities=17%  Similarity=0.231  Sum_probs=129.8

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHH-CCCCEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--7899998641-2564168
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRS-YSDSVFD   66 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~-~t~~~~d   66 (224)
                      +.|=|.+.  |+..-.+.++.+.++|+|.+-+-|      .||--.         ..+++  -+++++.+|+ ....|+=
T Consensus        23 lI~yitaG~P~~~~t~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~l~~vl~~v~~~r~~~~~~Piv  102 (285)
T PRK13120         23 LIPYIAAGDPSPQATVPLMHALVRAGADLVELGVPFSDPMADGPVVQRAAERAIAQGVGLRRVLELVADFRRDDSVTPVV  102 (285)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf             88785785899899999999999769999997898787456689999999999976998446999999987348988889


Q ss_pred             EEEEE-EEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEE
Q ss_conf             56788-512------033676404776079997066421589998677649825998523334478998862014-0289
Q gi|254780975|r   67 CHLMI-SSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILI  138 (224)
Q Consensus        67 vHLMv-~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vli  138 (224)
                        ||. -||      ++|++.+.++|+|=+++.==-.+.-.+..+.++++|...-.-+.|.|+-+.++.+..... +|-+
T Consensus       103 --lM~Y~Npi~~yG~e~F~~~~~~aGvdGlIIpDLP~EE~~~~~~~~~~~gi~~I~LiaPtT~~eRi~~I~~~s~GFvY~  180 (285)
T PRK13120        103 --LMGYANPIERMGQRAFAQAAQAAGVDGVLVVDYPPEEVDEFAAMLAEAGVAPIFLLAPTSTEARIEAIGRVARGYVYY  180 (285)
T ss_pred             --EEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEE
T ss_conf             --861054999987999999999839877964799979999999999966996589957999899999999508981899


Q ss_pred             EEEECCCC--CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHC
Q ss_conf             98306776--5332201357789986543138652698158998-8999999679989997426637
Q gi|254780975|r  139 MTVNPGFG--GQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       139 M~V~PG~~--Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      .++ .|-.  .+.+.+...+.++++|+.   .++++.|-=||+. +.++.+ ...+|.+|+||+|.+
T Consensus       181 VS~-~GVTG~~~~~~~~l~~~i~~ik~~---t~~Pv~vGFGIs~~e~v~~~-~~~ADGvIVGSAiVk  242 (285)
T PRK13120        181 VSL-KGVTGAGSLDTDDVARKLALIRRH---VHIPVGVGFGIRDAASAQRI-AAHADAVVIGSKLIE  242 (285)
T ss_pred             EEC-CCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEECCCCHHHHHHH-HCCCCEEEECHHHHH
T ss_conf             865-654688755668899999999972---69975999625989999999-702999998789999


No 79 
>PRK13126 consensus
Probab=98.41  E-value=2.2e-05  Score=54.75  Aligned_cols=206  Identities=14%  Similarity=0.123  Sum_probs=126.5

Q ss_pred             ECHHHHCCC--HHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHH----HHHHHH-CCCCEEEEEEEEE-EC----
Q ss_conf             817063258--89999999999965998999973426345843417899----998641-2564168567885-12----
Q gi|254780975|r    7 IVPSILAAD--FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADV----IRSLRS-YSDSVFDCHLMIS-SI----   74 (224)
Q Consensus         7 IspSil~~d--~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~----i~~i~~-~t~~~~dvHLMv~-~P----   74 (224)
                      +.|=+.+.+  .-...+.++.+ +.|+|.+-+-|=   |..-+.=||-+    .+.+++ ++....-+=||.= ||    
T Consensus         8 li~yitaG~P~~~~t~~~l~~l-~~gaDiiElGiP---FSDP~ADGPvIQ~A~~~Al~~G~~~~~~pivlM~Y~N~~~~g   83 (237)
T PRK13126          8 LGVYLTAGWPSADTFLEALAGL-SGLVDFFELGIP---TPNPKYDGPYIRLAHREAEEPGWDAPKAPTYLMAYWEDYAGS   83 (237)
T ss_pred             EEEEEECCCCCHHHHHHHHHHH-HCCCCEEEECCC---CCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHH
T ss_conf             6888717179879999999985-548999998998---888777689999999999985998568758999729877656


Q ss_pred             -CHHHHHHCCCCCCEEEEE---CCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCC
Q ss_conf             -033676404776079997---0664215899986776498259985233344789988620140289983067765332
Q gi|254780975|r   75 -DSHINIIADAGCDIITFH---PESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQL  150 (224)
Q Consensus        75 -~~~i~~~~~~g~d~i~~H---~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f  150 (224)
                       ++++.++.++|+|=+.+.   +|..+........++++|...-.-+.|.|+-+.++.+........-+++... .|...
T Consensus        84 ~~~f~~~~~~aGvdGlIipDLP~e~~ee~~~~~~~~~~~gl~~I~lv~ptt~~~ri~~i~~~s~gfiYvs~~gv-TG~~~  162 (237)
T PRK13126         84 PAELFETAAEVGARGVLAPDLLIDFPGDLERYLELSREYGLAPSFFIPSKFPHRLLRRLASLEPDFIYLGLYAA-TGIEL  162 (237)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECC-CCCCC
T ss_conf             99999999874997388368887781778999999997699779973899839999999985898799986526-67641


Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHHHHHHHHH
Q ss_conf             20135778998654313865269815899-8899999967998999742663789--989999999999997
Q gi|254780975|r  151 IESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQK--GEISYAKRLNDLKKS  219 (224)
Q Consensus       151 ~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~--d~~~~~~~l~~l~~~  219 (224)
                      .......++.+|+..  .+..+.|-=||+ .+.+.++.+.|+|-+|+||++.+.-  +..+..+-+++||+.
T Consensus       163 ~~~~~~~i~~ir~~~--~~~Pv~vGFGI~t~e~~~~~~~~~aDGvIVGSaiV~~i~~~~~~~~~~v~~lr~a  232 (237)
T PRK13126        163 PVYVERNVKTIRGLA--GDVYLVAGFAIDSPEKAARLVKAGADGVVVGTAFMRRLSSSVEEALSFLKEIRGA  232 (237)
T ss_pred             HHHHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             567999999999857--8997799945399999999986489999987899999997559999999999999


No 80 
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=98.41  E-value=0.00014  Score=49.54  Aligned_cols=188  Identities=18%  Similarity=0.203  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCC--CCCHHHHHHHHHCCCCE-EEEEEEEEECCHHHHH-HCCCCCCEEEEE
Q ss_conf             9999999999965998999973426345843--41789999864125641-6856788512033676-404776079997
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNI--SFGADVIRSLRSYSDSV-FDCHLMISSIDSHINI-IADAGCDIITFH   92 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~--~~~~~~i~~i~~~t~~~-~dvHLMv~~P~~~i~~-~~~~g~d~i~~H   92 (224)
                      .++ ++++.+.++|+||+=+=     |.|+-  ..+++..+.|.+...-. --|=+.++.....+.. +.+.+.|+|=+|
T Consensus        11 t~~-eda~~~~~~gad~iGfi-----f~~~SpR~v~~~~a~~i~~~~~~~~~~VgVfv~~~~~~i~~~~~~~~~d~vQlH   84 (212)
T PRK01222         11 TTP-EDALAAAEAGADAIGFV-----FYPKSPRYVTPEQAAELAAALPPFVKVVGVFVNASDEEIAEIVEAVGLDLLQLH   84 (212)
T ss_pred             CCH-HHHHHHHHCCCCEEEEE-----ECCCCCCEECHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEC
T ss_conf             959-99999995799989888-----038999462799999998627899737999945817999999985699889985


Q ss_pred             CCCCCCHHHHHHHHHH-CCCEEEEEEE--CCCCHHHHHHHHHHCCEEEEEEEE--CCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             0664215899986776-4982599852--333447899886201402899830--6776533220135778998654313
Q gi|254780975|r   93 PESSPHIRRSLRTIHA-MGKKTGVAIN--PETPVAILEDVIDEIDMILIMTVN--PGFGGQQLIESTIPKIRQAKALIGK  167 (224)
Q Consensus        93 ~E~~~~~~~~i~~i~~-~g~k~Giai~--p~T~~~~i~~~l~~~D~vliM~V~--PG~~Gq~f~~~~l~kI~~l~~~~~~  167 (224)
                      -+.+  ++ .++.+++ .+.++--|++  ....++.+..|.+.+|++|+=+-.  +|-+|+.|.-+.+.+++        
T Consensus        85 G~e~--~~-~~~~l~~~~~~~iikai~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~fdw~~l~~~~--------  153 (212)
T PRK01222         85 GDET--PE-FCRQLKRRYGLPVIKALRVRPAADLEAAAAYYPVADGLLLDAYVPLPGGTGKTFDWSLLAGFP--------  153 (212)
T ss_pred             CCCC--HH-HHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHCC--------
T ss_conf             7437--89-999999753970899984187788999998746687898638987678777643879986143--------


Q ss_pred             CCCEEEEECCCCHHHHHHHHH-CCCCEEEECHHHH---CCCCHHHHHHHHHHHHHHHHH
Q ss_conf             865269815899889999996-7998999742663---789989999999999997862
Q gi|254780975|r  168 RSISLEVDGGVTSRNIKSLVQ-AGADLLVVGSSFF---NQKGEISYAKRLNDLKKSALA  222 (224)
Q Consensus       168 ~~~~I~vDGGvn~~~i~~l~~-~Gad~~V~Gsaif---~~~d~~~~~~~l~~l~~~a~a  222 (224)
                      ...++.+-||+|.+|+.++.+ .++..+=+.|.+=   +.+|... ++.+-+-.+.|.|
T Consensus       154 ~~~~~~LAGGl~~~Nv~~ai~~~~p~gvDvsSGVE~~pG~KD~~k-i~~fi~~vr~a~~  211 (212)
T PRK01222        154 AGLPWMLAGGLNPDNVAEAIRQVRPYGVDVSSGVESAPGIKDPEK-IRAFIEAVKRADA  211 (212)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHCCCEEEECCCEECCCCCCCHHH-HHHHHHHHHHHCC
T ss_conf             578789966788789999999859999996381067899769999-9999999974525


No 81 
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.40  E-value=3.5e-05  Score=53.45  Aligned_cols=181  Identities=12%  Similarity=0.131  Sum_probs=132.3

Q ss_pred             HHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC--CCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCH
Q ss_conf             999999659989999734263458434178999986412--564168567885120336764047760799970664215
Q gi|254780975|r   22 EISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY--SDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHI   99 (224)
Q Consensus        22 ~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~--t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~   99 (224)
                      =++++.+.|+..+++-|-|..-       .+.-++|++-  --...++.|-++|   |-+.-+++|+.-|..-.|-..  
T Consensus       224 WlerLl~lGVktvQLRIKd~~~-------~~l~~~I~~Ai~l~~~~~a~LfIND---yWqlAI~~gaygVHLGQEDL~--  291 (439)
T PRK12290        224 WIERLLPLGIKTVQLRIKDPQQ-------PDLEQQIIRAIALGRQYNAQVFIND---YWQLAIKHQAYGVHLGQEDLE--  291 (439)
T ss_pred             HHHHHHHCCCCEEEEEECCCCH-------HHHHHHHHHHHHHHHHCCCEEEEEH---HHHHHHHCCCCEEECCHHHHH--
T ss_conf             9999997699679887379987-------9999999999999986498899814---999999849987862743322--


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCC-CCCCCHHHHHHHHHHHHHHC------CCCEE
Q ss_conf             899986776498259985233344789988620140289983067765-33220135778998654313------86526
Q gi|254780975|r  100 RRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGG-QQLIESTIPKIRQAKALIGK------RSISL  172 (224)
Q Consensus       100 ~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~G-q~f~~~~l~kI~~l~~~~~~------~~~~I  172 (224)
                      ...+..|++.|.+.||+-+...++..-..  -.-+||-+=-|-|--.- =++.|.-+.|++.-.++.+.      .++..
T Consensus       292 ~ADL~aI~~AGlrLGiSTH~~~El~rAl~--~~PsYIALG~IfpT~tK~Mp~~PQGL~rL~~y~~l~~~~p~~~~~~~Pt  369 (439)
T PRK12290        292 EANLAALTDAGIRLGLSTHGYYELLRIVQ--IQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYTEQTGFPT  369 (439)
T ss_pred             HCCHHHHHHCCCEEEECCCCHHHHHHHHH--CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf             22699998679657651699999999974--4998487557367554579988724999999999851355434579983


Q ss_pred             EEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf             98158998899999967998999742663789989999999999
Q gi|254780975|r  173 EVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       173 ~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l  216 (224)
                      -.=|||+.++++.+.++||+.+-+=|||-.++||..+.+.+..+
T Consensus       370 VAIGGI~~~r~~~V~~tGV~siAVV~AIT~A~dp~~av~~f~~~  413 (439)
T PRK12290        370 VAIGGIDQSNAEQVWQCGVSSLAVVRAITLAEDPKLVIEFFDQV  413 (439)
T ss_pred             EEECCCCHHHHHHHHHHCCCCEEEEEHHHCCCCHHHHHHHHHHH
T ss_conf             88977168888999981998179886333289989999999987


No 82 
>pfam00215 OMPdecase Orotidine 5'-phosphate decarboxylase / HUMPS family. This family includes Orotidine 5'-phosphate decarboxylase enzymes EC:4.1.1.23 that are involved in the final step of pyrimidine biosynthesis. The family also includes enzymes such as hexulose-6-phosphate synthase. This family appears to be distantly related to pfam00834.
Probab=98.40  E-value=1.1e-06  Score=63.07  Aligned_cols=199  Identities=18%  Similarity=0.189  Sum_probs=111.6

Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC-CCCEEEEEEEEEECC---HHHHHHCCCCC
Q ss_conf             63258899999999999659989999734263458434178999986412-564168567885120---33676404776
Q gi|254780975|r   11 ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY-SDSVFDCHLMISSID---SHINIIADAGC   86 (224)
Q Consensus        11 il~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~~P~---~~i~~~~~~g~   86 (224)
                      +++.|..++++.++.+++.+ +  |+++.-=+..=-..+|++.++.+++. ..+.+|.-++ +=|.   ++++.+.+.|+
T Consensus         4 ~vALD~~~~~~a~~l~~~l~-~--~v~~iKiG~~l~~~~G~~~i~~l~~~~~~iflDlKl~-DI~~Tv~~~~~~~~~~~~   79 (218)
T pfam00215         4 CVALDVPTLEEALELADELG-P--YVDIIKVGTPLFEAFGLKLVAELRKHGFLIFLDLKFA-DIGNTVAKQAKYKAKLGA   79 (218)
T ss_pred             EEEECCCCHHHHHHHHHHHC-C--CCCEEEECHHHHHHCCHHHHHHHHHCCCEEEEEEHHC-CHHHHHHHHHHHHHHCCC
T ss_conf             99967899999999999827-8--5619998899996469999999998699399972122-707899999999985699


Q ss_pred             CEEEEECCCCCC-HHHHHHHHHHCC--CEEEEEEECCCCHHHHHHHHHH-C--CEEEEE-EEECCCCCCCCCCHHHHHHH
Q ss_conf             079997066421-589998677649--8259985233344789988620-1--402899-83067765332201357789
Q gi|254780975|r   87 DIITFHPESSPH-IRRSLRTIHAMG--KKTGVAINPETPVAILEDVIDE-I--DMILIM-TVNPGFGGQQLIESTIPKIR  159 (224)
Q Consensus        87 d~i~~H~E~~~~-~~~~i~~i~~~g--~k~Giai~p~T~~~~i~~~l~~-~--D~vliM-~V~PG~~Gq~f~~~~l~kI~  159 (224)
                      |++|+|.-+... +....+..++.+  .-.+++.-.+..-..+..+... .  +.+... ....|..|---.+.-.+.++
T Consensus        80 d~~Tvh~~~G~~~l~~a~~~a~~~~~~~vl~v~~lts~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~G~V~s~~~~~~~~  159 (218)
T pfam00215        80 DIVTVHAYAGDGTLKAAKEAAEEYGGRGLLLVAELSSKGSLDLQEEGDLGYTQEIVHRAADLAAGVDGVVASATEPEALR  159 (218)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHH
T ss_conf             89999157997999999999874399708999946999989999875147299999999974567855765716778887


Q ss_pred             HHHHHHH--CCCCE--EEEECCCCH-HHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf             9865431--38652--698158998-899999967998999742663789989999999
Q gi|254780975|r  160 QAKALIG--KRSIS--LEVDGGVTS-RNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL  213 (224)
Q Consensus       160 ~l~~~~~--~~~~~--I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l  213 (224)
                      +.+.-+.  ..++.  ...-||.+. .+-....++|+|.+|+|++|.+++||.++++++
T Consensus       160 ~~~~~~~~vtPGI~~~~~~~~dq~r~~~~~~a~~~Gad~iIVGR~I~~a~dP~~aa~~i  218 (218)
T pfam00215       160 EIRPDFLILTPGIGLQGGDAGGQQRVTTPAVAKEAGADIIIVGRGITGAGDPVAAARAI  218 (218)
T ss_pred             HHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECHHCCCCCCHHHHHHHC
T ss_conf             65145448537768765437897325899999986999999891005799999999729


No 83 
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.40  E-value=0.00011  Score=50.19  Aligned_cols=194  Identities=14%  Similarity=0.130  Sum_probs=113.8

Q ss_pred             ECHHHHCCCHHHHHHHHHHHHHCC-CCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf             817063258899999999999659-9899997342634584341789999864125641685678851203367640477
Q gi|254780975|r    7 IVPSILAADFSRLGEEISNITKAG-AKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAG   85 (224)
Q Consensus         7 IspSil~~d~~~l~~~i~~l~~~~-~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g   85 (224)
                      |+|..  .|...+.+.++.+.++| +..+++.--..   +.-.+ ....+.+++.+ ..-++-|.+++   .++.-...|
T Consensus        18 ITP~~--~d~~~~~~~l~~aL~~g~Va~vqlR~k~~---d~~~~-~~~a~~L~~lc-~~~gv~lIIND---~~dlA~~~g   87 (221)
T PRK06512         18 VAPPI--ADGAALAKLLRAALSGGDVASVILPDYGL---DEATF-QKQAEKYVPVI-QEAGAAALIAG---DTRIAGRVK   87 (221)
T ss_pred             ECCCC--CCHHHHHHHHHHHHCCCCEEEEEEECCCC---CHHHH-HHHHHHHHHHH-HHCCCCEEECC---CHHHHHHCC
T ss_conf             78997--46678999999998469855999757999---99999-99999999999-98299199889---799999709


Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHH-HHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             6079997066421589998677649825998523334478-998862014028998306776533220135778998654
Q gi|254780975|r   86 CDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAI-LEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKAL  164 (224)
Q Consensus        86 ~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~-i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~  164 (224)
                      +|=+  |..-......  ...+..|-..-|......+.+. ..---.-.|||.+=.+.+. .-..-.+..++.++..++.
T Consensus        88 ADGV--HlGq~d~~~~--~aR~~lg~~~IIG~~~~~s~~~A~~A~e~GADYv~fG~~~~~-~k~~a~~~~l~~l~~~~~~  162 (221)
T PRK06512         88 ADGL--HIEGNAAALA--EAIEKHAPKMIVGFGNLRDRHGAMEVGELQPDYLFFGKLGAD-NKPEAHPRNLSLAEWWAEM  162 (221)
T ss_pred             CCEE--EECCCCCCHH--HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCHHHHHHHHHC
T ss_conf             9866--5268753199--999984788678640578899999999739985765787888-8998875425899999974


Q ss_pred             HHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             313865269815899889999996799899974266378998999999999999
Q gi|254780975|r  165 IGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       165 ~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
                         -.+.+-+=||||.+|+..+.++|+|.+-+.|+||+.+||.++...++.+..
T Consensus       163 ---~~iP~VAIGGIt~~n~~~v~~aGad~vAVisaI~~a~Dp~~A~~~l~~lld  213 (221)
T PRK06512        163 ---IEIPCIVQAGSDLASIVEVAETGAEFVALGRAVFDAHDPPLAVAEANALLD  213 (221)
T ss_pred             ---CCCCEEEECCCCHHHHHHHHHHCCCEEEEHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             ---799989982789999999998199899885996089999999999999873


No 84 
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=98.39  E-value=5.1e-06  Score=58.78  Aligned_cols=199  Identities=16%  Similarity=0.244  Sum_probs=107.1

Q ss_pred             CCCCEEECHHHHCCCHHHHHHHHHHHHHCC--CCEEEEEEECCEECCCCCCCHHHHHHHHHC-CCCEEEEEEEEEECC--
Q ss_conf             979818817063258899999999999659--989999734263458434178999986412-564168567885120--
Q gi|254780975|r    1 MTPSIQIVPSILAADFSRLGEEISNITKAG--AKQIHFDVMDGCFVPNISFGADVIRSLRSY-SDSVFDCHLMISSID--   75 (224)
Q Consensus         1 M~k~~~IspSil~~d~~~l~~~i~~l~~~~--~d~iHiDImDg~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~~P~--   75 (224)
                      |++++     +++.|..+.++.++.+++.+  +.++-+-.  .-|   ..+|++.++.+++. ..+.+|.-| .+=|.  
T Consensus         1 mk~~l-----ivAlD~~~~~~~~~l~~~l~~~i~~~Kig~--~l~---~~~G~~~i~~l~~~g~~iFlDlKl-~DIpnTv   69 (231)
T PRK00230          1 MDDRL-----IVALDFPSKEEALAFLDQLDPAVLFVKVGM--ELF---TAGGPQFVRELKQRGFKVFLDLKL-HDIPNTV   69 (231)
T ss_pred             CCCCE-----EEEECCCCHHHHHHHHHHHCCCCCEEEECH--HHH---HHCCHHHHHHHHHCCCCEEEEEEC-CCCCHHH
T ss_conf             99988-----999648999999999997177552999898--998---641899999999779968987202-2654589


Q ss_pred             -HHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHCCCE---EEEEEECCCCHHHHHHHHH---HCCEEEE---EEEECC
Q ss_conf             -33676404776079997066421-58999867764982---5998523334478998862---0140289---983067
Q gi|254780975|r   76 -SHINIIADAGCDIITFHPESSPH-IRRSLRTIHAMGKK---TGVAINPETPVAILEDVID---EIDMILI---MTVNPG  144 (224)
Q Consensus        76 -~~i~~~~~~g~d~i~~H~E~~~~-~~~~i~~i~~~g~k---~Giai~p~T~~~~i~~~l~---~~D~vli---M~V~PG  144 (224)
                       .-+..+.+.|+|++++|.-.... +....+..++.+.+   .|+.+--+.+-+.+..+..   ..+.|+-   +..+-|
T Consensus        70 ~~~~~~i~~~g~d~vtvH~~~G~~~l~a~~~~~~~~~~~~kll~Vt~LTS~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g  149 (231)
T PRK00230         70 AKAVRAAAKLGVDMVTVHASGGARMMAAAREGLEPGGSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAG  149 (231)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             99999998579989998257859999999998871489875999996236898899866757899999999999999969


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH-----------HHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf             7653322013577899865431386526981589988-----------99999967998999742663789989999999
Q gi|254780975|r  145 FGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSR-----------NIKSLVQAGADLLVVGSSFFNQKGEISYAKRL  213 (224)
Q Consensus       145 ~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~-----------~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l  213 (224)
                      ..|---.+   ..++.+|+..++ ++. .+=-||+.+           |-.+..+.|||.+|+|+.|.+++||.++++++
T Consensus       150 ~dGiVcs~---~e~~~ir~~~~~-~~~-ivTPGIr~~~~~~~DQ~rv~TP~~Ai~~GAD~iVVGR~I~~s~dP~~a~~~I  224 (231)
T PRK00230        150 LDGVVCSA---QEAAALREATGP-DFL-LVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAEDPAAALEAI  224 (231)
T ss_pred             CCEEECCH---HHHHHHHHHCCC-CCE-EECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf             98486388---899999864598-718-9867727788875674656899999987999999898456899999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780975|r  214 ND  215 (224)
Q Consensus       214 ~~  215 (224)
                      .+
T Consensus       225 ~~  226 (231)
T PRK00230        225 LA  226 (231)
T ss_pred             HH
T ss_conf             99


No 85 
>PRK13132 consensus
Probab=98.36  E-value=0.00019  Score=48.79  Aligned_cols=200  Identities=11%  Similarity=0.202  Sum_probs=129.2

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf             81706325--889999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC   67 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv   67 (224)
                      +.|=+.+.  |.....+.++.+.++|+|.+-+-|      .||--.         ..+++  -++.++++|.  +.|  +
T Consensus        13 ~I~yitaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~aDGPvIq~A~~~AL~~G~~~~~~~~~~~~ir~--~~p--i   88 (246)
T PRK13132         13 NIGYIVAGYPNLETTKEFLQRLDESPLDILELGIPYSDPLADGKLIADASFIALQQGVNTDTVFELLARVKT--KKA--L   88 (246)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC--CCC--E
T ss_conf             247882858998999999999997499989978988887655899999999998779989999999997536--999--7


Q ss_pred             EEEE-EEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEE
Q ss_conf             6788-512------033676404776079997066421589998677649825998523334478998862014-02899
Q gi|254780975|r   68 HLMI-SSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIM  139 (224)
Q Consensus        68 HLMv-~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM  139 (224)
                      -||. -||      ++|++++.++|+|-+.+.==-.+......+.++++|...-.-+.|.| .+.+..++...+ +|-++
T Consensus        89 vlM~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~ee~~~~~~~~~~~~i~~I~lvaPTs-~~R~~~i~~~s~gfiY~v  167 (246)
T PRK13132         89 VFLVYYNLIFAYGLEKFVKKAKELGISGLIVPDLPFEESEELIKECEKYNIALIPLISVTS-PKRAKKILKHAKGFIYAL  167 (246)
T ss_pred             EEEEECHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCCEEEE
T ss_conf             9996010887729999999998769985775799978989999999985997014425797-899999995489827997


Q ss_pred             EEECCCCCCC--CCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHC---CCCHHHHHHHH
Q ss_conf             8306776533--22013577899865431386526981589-988999999679989997426637---89989999999
Q gi|254780975|r  140 TVNPGFGGQQ--LIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFN---QKGEISYAKRL  213 (224)
Q Consensus       140 ~V~PG~~Gq~--f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~---~~d~~~~~~~l  213 (224)
                      +. .|-.|..  +.+..-+.++.+|+.   .+.++.|-=|| +.+.++.+ ..+||-+|+||++.+   .....+..+.+
T Consensus       168 s~-~GvTG~~~~~~~~~~~~i~~ik~~---t~~Pv~vGFGI~~~e~v~~~-~~~aDGvIVGSa~v~~i~~~~~~~~~k~i  242 (246)
T PRK13132        168 GS-IGVTGTKSVEEARLKDKVKEIKSF---TDLPVAVGFGIKNNQDVKRM-RKYADGVIVGTSIVKLFKKFSLDEIMKDI  242 (246)
T ss_pred             EC-CCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHH-HHCCCEEEECHHHHHHHHHCCHHHHHHHH
T ss_conf             53-567777666368899999999962---89986997798999999999-82299999709999999872968899999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780975|r  214 NDL  216 (224)
Q Consensus       214 ~~l  216 (224)
                      ++|
T Consensus       243 ~el  245 (246)
T PRK13132        243 EEI  245 (246)
T ss_pred             HHH
T ss_conf             964


No 86 
>PRK13137 consensus
Probab=98.30  E-value=0.00014  Score=49.49  Aligned_cols=200  Identities=19%  Similarity=0.256  Sum_probs=129.0

Q ss_pred             ECHHHHCCC--HHHHHHHHHHHHHCCCCEEEEEE------ECCEEC---------CCCCC--CHHHHHHHHHCCCCEEEE
Q ss_conf             817063258--89999999999965998999973------426345---------84341--789999864125641685
Q gi|254780975|r    7 IVPSILAAD--FSRLGEEISNITKAGAKQIHFDV------MDGCFV---------PNISF--GADVIRSLRSYSDSVFDC   67 (224)
Q Consensus         7 IspSil~~d--~~~l~~~i~~l~~~~~d~iHiDI------mDg~fv---------pn~~~--~~~~i~~i~~~t~~~~dv   67 (224)
                      +.|=+.+.+  +....+.++.+. +|+|.+.+-|      .||--.         ..+++  .++.++.+|+.++.|+=+
T Consensus        27 li~yitaG~P~~~~s~~~~~~l~-~gaDiiElGiPFSDP~ADGPvIQ~A~~~AL~~G~~l~~~l~~~~~~r~~~~~Pivl  105 (266)
T PRK13137         27 FIPFLTAGYPSAAGFLQVAEELL-AYADLLEVGIPYSDPLGDGPTIQRASEQALAGGTSTRRTLELVRELRALTDTPLVI  105 (266)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf             88786681888789999999997-38998997899888566579999999999977986778999999755568987899


Q ss_pred             EEEE-EEC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEE
Q ss_conf             6788-512------033676404776079997066421589998677649825998523334478998862014-02899
Q gi|254780975|r   68 HLMI-SSI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIM  139 (224)
Q Consensus        68 HLMv-~~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM  139 (224)
                        |. -||      ++|++++.++|+|=+.++==-.+.-.+..+.++++|...-.-+.|.|+.+.+..+....+ +|-+.
T Consensus       106 --M~Y~N~i~~yG~e~F~~~a~~aGvdGlIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtT~~eRi~~i~~~a~GFiY~V  183 (266)
T PRK13137        106 --MTYLNPIYAVGPEEFMRLFQEAGVDGLILPDLPPDQDPEIADLAAEIGLAVTFLIAPTSTPERVKLVARACTGFLYAV  183 (266)
T ss_pred             --EECHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             --934589987589999999997696099947999788899999998759978999379999999999996088828997


Q ss_pred             EEECCCCC-CC-CC-CHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHH----CCCCHHHHHH
Q ss_conf             83067765-33-22-01357789986543138652698158998-899999967998999742663----7899899999
Q gi|254780975|r  140 TVNPGFGG-QQ-LI-ESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFF----NQKGEISYAK  211 (224)
Q Consensus       140 ~V~PG~~G-q~-f~-~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif----~~~d~~~~~~  211 (224)
                      ++. |-.| +. +. ...-+.++.+|+.   .+.++.|-=||+. +.+..+.+ .||-+|+||++.    ...|..+..+
T Consensus       184 s~~-GvTG~r~~~~~~~l~~~i~~ik~~---t~~Pv~vGFGIs~~e~~~~~~~-~aDGvIVGSaiV~~i~e~~d~~~~~~  258 (266)
T PRK13137        184 SVT-GVTGMREGLALGEVPDMLRLARQY---AALPVAVGFGVKDKATAAQVAQ-VADGVVVGSAFINAVEEGRDVAALAQ  258 (266)
T ss_pred             ECC-CCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHH-HCCEEEEHHHHHHHHHHCCCHHHHHH
T ss_conf             446-766777667879999999999863---8998799826698899999983-19999980999999995898999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780975|r  212 RLN  214 (224)
Q Consensus       212 ~l~  214 (224)
                      .+.
T Consensus       259 el~  261 (266)
T PRK13137        259 EIA  261 (266)
T ss_pred             HHH
T ss_conf             999


No 87 
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.28  E-value=0.00012  Score=49.96  Aligned_cols=178  Identities=18%  Similarity=0.222  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEE---------EEEEEECCHHHHHHCCCCCC
Q ss_conf             999999999996599899997342634584341789999864125641685---------67885120336764047760
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDC---------HLMISSIDSHINIIADAGCD   87 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dv---------HLMv~~P~~~i~~~~~~g~d   87 (224)
                      ..+.+.-..+..+|+.-+-+            =|++.++.+|+.+++|+==         -..+..-.+-++.+.++|+|
T Consensus        23 ~im~~mA~Aa~~gGA~giR~------------~~~~dI~aik~~v~lPIIGi~K~~~~~s~VyITPt~~ev~~l~~aGad   90 (222)
T PRK01130         23 EIMAAMALAAEQGGAVGIRA------------NGVEDIKAIREVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGAD   90 (222)
T ss_pred             HHHHHHHHHHHHCCCEEEEC------------CCHHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHCCCC
T ss_conf             99999999999689629971------------898899999984799879999546899973751769999999986999


Q ss_pred             EEEEECCCCC-----CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEE-CCCCC----CCCCCHHHHH
Q ss_conf             7999706642-----158999867764982599852333447899886201402899830-67765----3322013577
Q gi|254780975|r   88 IITFHPESSP-----HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVN-PGFGG----QQLIESTIPK  157 (224)
Q Consensus        88 ~i~~H~E~~~-----~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~-PG~~G----q~f~~~~l~k  157 (224)
                      +|.+-+-.-.     .+.++++.||+.. ..-+.=..+|--+-+.-.---+|+|   +.+ -||..    ....+.-++.
T Consensus        91 iIA~DaT~R~RP~g~~~~~~i~~i~~~~-~~l~MAD~st~eea~~A~~~G~D~V---~TTLsGYT~~t~~~~~~~pD~~l  166 (222)
T PRK01130         91 IIALDATLRPRPDGETLAELVKRIKEKP-GQLLMADCSTLEEGLAAAKLGFDFI---GTTLSGYTEYTEGETPEEPDFAL  166 (222)
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHH-CCEEEEECCCHHHHHHHHHCCCCEE---ECCCCCCCCCCCCCCCCCCCHHH
T ss_conf             9998467898989968999999999982-9878985488999999998499999---72334567676778789986999


Q ss_pred             HHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf             8998654313865269815899-88999999679989997426637899899999999999
Q gi|254780975|r  158 IRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK  217 (224)
Q Consensus       158 I~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~  217 (224)
                      ++++++.    +..+...|+++ .+.+.+..++||+.+|+||||=   .|....+++.+..
T Consensus       167 v~~l~~~----~~pvIaEGri~tPe~a~~al~~GA~aVvVGsAIT---rP~~IT~~F~~ai  220 (222)
T PRK01130        167 LKELLKA----GCPVIAEGRINTPEQAKKALELGAHAVVVGSAIT---RPEEITKWFVDAL  220 (222)
T ss_pred             HHHHHHC----CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCC---CHHHHHHHHHHHH
T ss_conf             9999958----9989974798999999999984998999897547---9899999999997


No 88 
>pfam00697 PRAI N-(5'phosphoribosyl)anthranilate (PRA) isomerase.
Probab=98.27  E-value=0.0002  Score=48.63  Aligned_cols=166  Identities=20%  Similarity=0.251  Sum_probs=111.9

Q ss_pred             HHHHHHHHCCCCEEEEEEECCEECCCC--CCCHHHHHHHHHCCCCEEEEEEEEEECCHH-HHHHCCCCCCEEEEECCCCC
Q ss_conf             999999965998999973426345843--417899998641256416856788512033-67640477607999706642
Q gi|254780975|r   21 EEISNITKAGAKQIHFDVMDGCFVPNI--SFGADVIRSLRSYSDSVFDCHLMISSIDSH-INIIADAGCDIITFHPESSP   97 (224)
Q Consensus        21 ~~i~~l~~~~~d~iHiDImDg~fvpn~--~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~-i~~~~~~g~d~i~~H~E~~~   97 (224)
                      ++++.+.+.|+||+=+=     |.|+-  -+.++..++|.+...... |=+.++.+... .+.+...+.|++=+|-+.+.
T Consensus        10 ed~~~~~~~gad~iGfi-----f~~~SpR~i~~~~a~~i~~~~~~~~-VgVfv~~~~~~i~~~~~~~~~d~vQlHG~e~~   83 (195)
T pfam00697        10 EDVVAAVPAGADYLGLI-----FAPSSKRQVFPEQAQELRSAVPLLL-VGVFVNQPIEEVLRIAQVLGLDVVQLHGDEPQ   83 (195)
T ss_pred             HHHHHHHHCCCCEEEEE-----CCCCCCCCCCHHHHHHHHHHCCCCE-EEEECCCCHHHHHHHHHHCCCCEEEECCCCCH
T ss_conf             99999995899999883-----5799998879999999997589865-99984786899999998379987998899998


Q ss_pred             CHHHHHHHHHHCCCEEEEEEEC--CCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             1589998677649825998523--33447899886201402899830677653322013577899865431386526981
Q gi|254780975|r   98 HIRRSLRTIHAMGKKTGVAINP--ETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVD  175 (224)
Q Consensus        98 ~~~~~i~~i~~~g~k~Giai~p--~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vD  175 (224)
                      .   ....++. +.....++..  +.+......+.+.+|++|+=+ .+|-.|+.|.-+.+.++.+       ...++.+-
T Consensus        84 ~---~~~~~~~-~~~~ikai~~~~~~~~~~~~~~~~~~d~~L~Ds-~~GGtG~~fdw~~~~~~~~-------~~~~~~LA  151 (195)
T pfam00697        84 E---YANLLPT-GVPVIKAFHVPASVDDADLARRADHVDLPLLDS-GQGGTGKLFDWSLISKLLL-------SGLPVILA  151 (195)
T ss_pred             H---HHHHHHH-CCCCEEEEEECCCCCHHHHHHHCCCCCEEEECC-CCCCCCCCCCHHHHHHHHH-------CCCCEEEE
T ss_conf             9---9999984-688338999478606588987330312551126-7898877548999865552-------16878994


Q ss_pred             CCCCHHHHHHHHH-CCCCEEEECHHHHCCC
Q ss_conf             5899889999996-7998999742663789
Q gi|254780975|r  176 GGVTSRNIKSLVQ-AGADLLVVGSSFFNQK  204 (224)
Q Consensus       176 GGvn~~~i~~l~~-~Gad~~V~Gsaif~~~  204 (224)
                      ||+|.+|+.++.+ .++..+=+.|.+=.++
T Consensus       152 GGL~~~NV~~ai~~~~p~gVDvsSGVE~~p  181 (195)
T pfam00697       152 GGLTPENVSEAIQTLGPAGVDVSSGVETNP  181 (195)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             688989999999852998999407016889


No 89 
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains:  the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=98.27  E-value=4.5e-06  Score=59.10  Aligned_cols=190  Identities=18%  Similarity=0.243  Sum_probs=102.9

Q ss_pred             HCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCC-CCCCHHHHHHHHHCC-CCEEEEEEEEEEC---CHHHHHHCCCCC
Q ss_conf             32588999999999996599899997342634584-341789999864125-6416856788512---033676404776
Q gi|254780975|r   12 LAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPN-ISFGADVIRSLRSYS-DSVFDCHLMISSI---DSHINIIADAGC   86 (224)
Q Consensus        12 l~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn-~~~~~~~i~~i~~~t-~~~~dvHLMv~~P---~~~i~~~~~~g~   86 (224)
                      ++.|..+..+.++.+++.+ +++  ++.-=+. +- ..+|++.++++++.. .+.+|.-++= =|   ..++..+.+.|+
T Consensus         3 vALD~~~~~~~~~i~~~~~-~~v--~~~Kig~-~l~~~~g~~~i~~l~~~~~~iflDlK~~D-I~nTv~~~~~~~~~~~~   77 (216)
T cd04725           3 VALDPPDEEFALALIDALG-PYV--CAVKVGL-ELFEAAGPEIVKELRELGFLVFLDLKLGD-IPNTVAAAAEALLGLGA   77 (216)
T ss_pred             EEECCCCHHHHHHHHHHHC-CCC--CEEEECH-HHHHHCCHHHHHHHHHCCCEEEEEHHHCC-HHHHHHHHHHHHHHCCC
T ss_conf             9964899999999999737-856--2999869-99974399999999867977863035378-05899999999984598


Q ss_pred             CEEEEECCCCCC-HHHHHHHHHHCCCE-EEEEEECCCCHHHH--------HHHHHHCCEEEEEEEECCCCCCCCCCHHHH
Q ss_conf             079997066421-58999867764982-59985233344789--------988620140289983067765332201357
Q gi|254780975|r   87 DIITFHPESSPH-IRRSLRTIHAMGKK-TGVAINPETPVAIL--------EDVIDEIDMILIMTVNPGFGGQQLIESTIP  156 (224)
Q Consensus        87 d~i~~H~E~~~~-~~~~i~~i~~~g~k-~Giai~p~T~~~~i--------~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~  156 (224)
                      |++|+|.=...+ +...++..++.+.+ .+++..-+..-..+        .++...   +.-++.+-|..|---.+.-.+
T Consensus        78 d~~Tvh~~~G~~~l~~~~~~~~~~~~~vl~V~~lts~~~~~l~~~~~~~~~~~~~~---~~~~a~~~g~~G~V~~~~~~~  154 (216)
T cd04725          78 DAVTVHPYGGSDMLKAALEAAEEKGKGLFAVTVLSSPGALDLQEGIPGSLEDLVER---LAKLAREAGVDGVVCGATEPE  154 (216)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHCCCHHHHHHH---HHHHHHHHCCCEEEECCCHHH
T ss_conf             89998467879999999998643598069999716888789998853778999999---999998618977998862489


Q ss_pred             HHHHHHHHHHCCCCEE---------EEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf             7899865431386526---------98158998899999967998999742663789989999999
Q gi|254780975|r  157 KIRQAKALIGKRSISL---------EVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL  213 (224)
Q Consensus       157 kI~~l~~~~~~~~~~I---------~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l  213 (224)
                      .++  |...+  ++.+         ..|++-+-.|..+.++.|+|.+|+|++|.+++||.++++++
T Consensus       155 ~i~--~~~~~--~~~iltPGI~~~~~~~dq~r~~tp~~a~~~gad~ivVGR~I~~a~~p~~~~~~i  216 (216)
T cd04725         155 ALR--RALGP--DFLILTPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEAI  216 (216)
T ss_pred             HHH--HHCCC--CCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf             999--85088--617973560577776688266899999987999999891014899999999729


No 90 
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=98.22  E-value=0.00026  Score=47.84  Aligned_cols=157  Identities=20%  Similarity=0.261  Sum_probs=103.2

Q ss_pred             CHHHHHHHHHCCCCEEEE---------EEEEEECCHHHHHHCCCCCCEEEEECCCCC---CHHHHHHHHHHCCCEEEEEE
Q ss_conf             789999864125641685---------678851203367640477607999706642---15899986776498259985
Q gi|254780975|r   50 GADVIRSLRSYSDSVFDC---------HLMISSIDSHINIIADAGCDIITFHPESSP---HIRRSLRTIHAMGKKTGVAI  117 (224)
Q Consensus        50 ~~~~i~~i~~~t~~~~dv---------HLMv~~P~~~i~~~~~~g~d~i~~H~E~~~---~~~~~i~~i~~~g~k~Giai  117 (224)
                      |++.++.+|+.+++|+==         -..+..-.+-++.+.++|+|+|.+-+-.-+   .+.++++.||+.+.  -+.=
T Consensus        20 ~~~dI~aik~~v~vPIIGi~K~~~~~~~VyITPt~~ev~~l~~aGadiIA~DaT~R~RP~~~~~lv~~i~~~~~--l~MA   97 (192)
T pfam04131        20 GVNNIKAIRAIVDLPIIGIVKRDLPDSPVRITPTMKDIDELANAGADIIALDGTDRPRPVDIESFIKRIKEKGQ--LAMA   97 (192)
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCCCCCCCEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC--EEEE
T ss_conf             99999999985899879998567899981655889999999985999999846789897589999999998199--8899


Q ss_pred             ECCCCHHHHHHHHHHCCEEEEEEEE-CCCCCCCC-CCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEE
Q ss_conf             2333447899886201402899830-67765332-20135778998654313865269815899-889999996799899
Q gi|254780975|r  118 NPETPVAILEDVIDEIDMILIMTVN-PGFGGQQL-IESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLL  194 (224)
Q Consensus       118 ~p~T~~~~i~~~l~~~D~vliM~V~-PG~~Gq~f-~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~  194 (224)
                      ..+|--+.+.-.---+|+|   +.+ -||.+..- .+.-++-++++++    .+..+...|+++ .+.+.+..++|++.+
T Consensus        98 D~st~eea~~A~~~G~D~I---~TTL~GYT~~t~~~~pD~~ll~~l~~----~~~pvIaEGri~tPe~a~~a~~~GA~aV  170 (192)
T pfam04131        98 DCSTFEEGLNAHKLGVDIV---GTTLSGYTGGSNPAEPDFQLVKTLSE----AGCFVIAEGRYNTPELAKKAIEIGADAV  170 (192)
T ss_pred             ECCCHHHHHHHHHCCCCEE---ECCCCCCCCCCCCCCCCHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             7499999999998599999---82325578999999997899999986----8993998579899999999998399899


Q ss_pred             EECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             974266378998999999999999
Q gi|254780975|r  195 VVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       195 V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
                      |+||+|=   .|....+++.+-.+
T Consensus       171 VVGsAIT---rP~~IT~~F~~ai~  191 (192)
T pfam04131       171 TVGSAIT---RLEEITQWFIEAIK  191 (192)
T ss_pred             EECCCCC---CHHHHHHHHHHHHH
T ss_conf             9896537---98999999999972


No 91 
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.20  E-value=0.00018  Score=48.85  Aligned_cols=149  Identities=19%  Similarity=0.282  Sum_probs=84.0

Q ss_pred             HHHHHHCCCCEEEEEEEEEECCHH---HHHHCCCCCCEEEEECC---CCC---------CHHHHHHHHHHCCC-EEEEEE
Q ss_conf             998641256416856788512033---67640477607999706---642---------15899986776498-259985
Q gi|254780975|r   54 IRSLRSYSDSVFDCHLMISSIDSH---INIIADAGCDIITFHPE---SSP---------HIRRSLRTIHAMGK-KTGVAI  117 (224)
Q Consensus        54 i~~i~~~t~~~~dvHLMv~~P~~~---i~~~~~~g~d~i~~H~E---~~~---------~~~~~i~~i~~~g~-k~Giai  117 (224)
                      ++..++..+.|+=+-++...++.|   ...+.++|+|.+-+-.-   ...         ...++++++++.-. -+.+=|
T Consensus        93 i~~~k~~~~~pvIaSi~g~s~ee~~~~a~~~e~~gadaiElNis~~~~~~~~~~~~~~~~~~~iv~~V~~~~~~Pv~vKL  172 (333)
T PRK07565         93 IRRAKEAVDIPVIASLNGSSAGGWVDYARQIEEAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL  172 (333)
T ss_pred             HHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             99877505984598747799899999999997649988999766779886544465078899999999864688568735


Q ss_pred             ECCC-CHHHHHHHHHH--CCEEEEE-------------EEEC--CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             2333-44789988620--1402899-------------8306--776533220135778998654313865269815899
Q gi|254780975|r  118 NPET-PVAILEDVIDE--IDMILIM-------------TVNP--GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT  179 (224)
Q Consensus       118 ~p~T-~~~~i~~~l~~--~D~vliM-------------~V~P--G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn  179 (224)
                      .|+. .+..+..-+..  +|.|.+.             ...|  +++|....+-++.-|.++++   ..++.|.-=|||.
T Consensus       173 sPn~tdi~~iA~aa~~~Gadgv~~iNT~~~~~Id~e~~~~~~~~~lSgp~~~~~alr~v~~v~~---~~~ipIiG~GGI~  249 (333)
T PRK07565        173 SPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSG---RVGADLAATTGVH  249 (333)
T ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHC---CCCCCEEEECCCC
T ss_conf             9982109999999997499889984366656331554437368666774312078899999960---4698988888959


Q ss_pred             -HHHHHHHHHCCCCEEEECHHHHCC-CC
Q ss_conf             -889999996799899974266378-99
Q gi|254780975|r  180 -SRNIKSLVQAGADLLVVGSSFFNQ-KG  205 (224)
Q Consensus       180 -~~~i~~l~~~Gad~~V~Gsaif~~-~d  205 (224)
                       .+.+-+..-+||+.+=+||++|.. ++
T Consensus       250 sg~DaiE~ilAGAsaVQv~Ta~~~~G~~  277 (333)
T PRK07565        250 DAEDVIKMLLAGADVVMIASALLRHGPD  277 (333)
T ss_pred             CHHHHHHHHHCCCCHHEEEHHHHHHCCH
T ss_conf             8999999998098863362236653727


No 92 
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=98.20  E-value=0.00027  Score=47.73  Aligned_cols=170  Identities=19%  Similarity=0.217  Sum_probs=117.0

Q ss_pred             HHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCC-CCEEEEEEEEEECCHHHH-HHCCCCCCEEEEECCCCCC
Q ss_conf             99999996599899997342634584341789999864125-641685678851203367-6404776079997066421
Q gi|254780975|r   21 EEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYS-DSVFDCHLMISSIDSHIN-IIADAGCDIITFHPESSPH   98 (224)
Q Consensus        21 ~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t-~~~~dvHLMv~~P~~~i~-~~~~~g~d~i~~H~E~~~~   98 (224)
                      ++++.+.++|+||+=+=+....  |.. .+++..+.|.+.. ..+.-|=+.++.....+. .+...+.|+|-+|-+.+. 
T Consensus        10 ~d~~~~~~~g~d~iGfif~~~S--pR~-i~~~~a~~l~~~~~~~~~~V~Vfvn~~~~~i~~~~~~~~~d~vQlHG~e~~-   85 (203)
T cd00405          10 EDALAAAEAGADAIGFIFAPKS--PRY-VSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDESP-   85 (203)
T ss_pred             HHHHHHHHCCCCEEEEECCCCC--CCE-ECHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCH-
T ss_conf             9999998579998988556998--971-189999999973699853999991683999999998769988998789997-


Q ss_pred             HHHHHHHHHHC-CCEEEEEEECCCC--HHHHHHHHHHCCEEEEEEEE---CCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf             58999867764-9825998523334--47899886201402899830---677653322013577899865431386526
Q gi|254780975|r   99 IRRSLRTIHAM-GKKTGVAINPETP--VAILEDVIDEIDMILIMTVN---PGFGGQQLIESTIPKIRQAKALIGKRSISL  172 (224)
Q Consensus        99 ~~~~i~~i~~~-g~k~Giai~p~T~--~~~i~~~l~~~D~vliM~V~---PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I  172 (224)
                       + .+..++.. +.+.--|+++..+  ++....|.+.+|++|+=+-.   +|.+|+.|.-+.+.++.      .  ..+.
T Consensus        86 -~-~~~~lk~~~~~~iikai~v~~~~~~~~~~~~~~~~d~~L~Ds~~~~~~GGtG~~fdw~~l~~~~------~--~~p~  155 (203)
T cd00405          86 -E-YCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA------S--RKPV  155 (203)
T ss_pred             -H-HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEECHHHHHHCC------C--CCCE
T ss_conf             -9-9999875059649999614977779999874377758999688887688776533889986212------4--7987


Q ss_pred             EEECCCCHHHHHHHHHC-CCCEEEECHHHHCCC
Q ss_conf             98158998899999967-998999742663789
Q gi|254780975|r  173 EVDGGVTSRNIKSLVQA-GADLLVVGSSFFNQK  204 (224)
Q Consensus       173 ~vDGGvn~~~i~~l~~~-Gad~~V~Gsaif~~~  204 (224)
                      .+-||+|.+|+.++.+. ++..+=+-|.+=.++
T Consensus       156 ~LAGGl~~~NV~~ai~~~~p~gvDvsSgvE~~p  188 (203)
T cd00405         156 ILAGGLTPDNVAEAIRLVRPYGVDVSSGVETSP  188 (203)
T ss_pred             EEECCCCHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             997788988999999850998999767015789


No 93 
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=98.15  E-value=0.00085  Score=44.57  Aligned_cols=171  Identities=17%  Similarity=0.203  Sum_probs=111.2

Q ss_pred             HHHHHHHHCCCCEEEEEEECCEECCCC--CCCHHHHHHHHHC-CCCEEEEEEEEEECCHHHHHH-CCCCCCEEEEECCCC
Q ss_conf             999999965998999973426345843--4178999986412-564168567885120336764-047760799970664
Q gi|254780975|r   21 EEISNITKAGAKQIHFDVMDGCFVPNI--SFGADVIRSLRSY-SDSVFDCHLMISSIDSHINII-ADAGCDIITFHPESS   96 (224)
Q Consensus        21 ~~i~~l~~~~~d~iHiDImDg~fvpn~--~~~~~~i~~i~~~-t~~~~dvHLMv~~P~~~i~~~-~~~g~d~i~~H~E~~   96 (224)
                      ++++.+.++|+|++=+=     |.|.-  ...++..+.|.+. +....-|=+.|+.+...+..+ ...+.|++=+|=+..
T Consensus        12 eda~~a~~~gaD~iGfi-----f~~~SpR~i~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQlHG~e~   86 (207)
T PRK13958         12 KDVTAASQLPIDAIGFI-----HYEKSKRHQTITQIKKLASAVPNHIDKVCVMVNPDLTTIEHVLSNTSINTIQLHGTES   86 (207)
T ss_pred             HHHHHHHHCCCCEEEEE-----CCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             99999996899999995-----5789998659999999998655468869999469799999999857997798648999


Q ss_pred             CCHHHHHHHHHHC--CCEEEEEEECCCC-HHHHHHHHHHCCEEEEEEEE--CCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf             2158999867764--9825998523334-47899886201402899830--67765332201357789986543138652
Q gi|254780975|r   97 PHIRRSLRTIHAM--GKKTGVAINPETP-VAILEDVIDEIDMILIMTVN--PGFGGQQLIESTIPKIRQAKALIGKRSIS  171 (224)
Q Consensus        97 ~~~~~~i~~i~~~--g~k~Giai~p~T~-~~~i~~~l~~~D~vliM~V~--PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~  171 (224)
                      .   +.++.++..  +.+.--|+..... ++.+.+|.+.+|++|+=+-.  .|-+|+.|.-+.+.+++         +.+
T Consensus        87 ~---~~~~~~~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~fdW~~l~~~~---------~~~  154 (207)
T PRK13958         87 I---DFIQEIKKKYSSIKITKALAADENIIQNINKYKGFVDLFIIDTPSVSYGGTGQTYDWTILKHIK---------DIP  154 (207)
T ss_pred             H---HHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHHHHCC---------CCC
T ss_conf             9---9999997555896799996166768999998675324787657766689987866878886255---------898


Q ss_pred             EEEECCCCHHHHHHHHH--CCCCEEEECHHH--HCCCCHHH
Q ss_conf             69815899889999996--799899974266--37899899
Q gi|254780975|r  172 LEVDGGVTSRNIKSLVQ--AGADLLVVGSSF--FNQKGEIS  208 (224)
Q Consensus       172 I~vDGGvn~~~i~~l~~--~Gad~~V~Gsai--f~~~d~~~  208 (224)
                      +.+-||+|.+|+..+..  .++..+=+.|.+  =+.+|+..
T Consensus       155 ~~LAGGL~p~NV~~a~~~~~~p~gVDvsSGVE~~G~KD~~K  195 (207)
T PRK13958        155 YLIAGGINSENIQTVNQLKLSHQGYDLASGIEVNGRKDIEK  195 (207)
T ss_pred             EEEEECCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHH
T ss_conf             69994698899999996357999898216567889879999


No 94 
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.15  E-value=0.00021  Score=48.43  Aligned_cols=173  Identities=20%  Similarity=0.234  Sum_probs=116.5

Q ss_pred             EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             881706325889999999999965998999973426345843417899998641-2564168567885120336764047
Q gi|254780975|r    6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      ++.|=+-..+..+.....+.|.++|+..+-+-.--       .-..+.++.+++ +++..+-+=  +---...++...++
T Consensus        14 ~vi~Vlr~~~~~~a~~~~~al~~gGi~~iEiTl~t-------~~a~~~I~~l~~~~p~~~iGaG--TV~~~e~~~~a~~a   84 (210)
T PRK07455         14 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNS-------DQPAELISQLREKLPECIIGTG--TLLTLEDLEEAIAA   84 (210)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC-------CCHHHHHHHHHHHCCCCEEEEE--ECCCHHHHHHHHHC
T ss_conf             97999975999999999999998799889996899-------8899999999987899689888--18789999999986


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf             760799970664215899986776498--259985233344789988620140289983067765332201357789986
Q gi|254780975|r   85 GCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK  162 (224)
Q Consensus        85 g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~  162 (224)
                      |++.+.-..=  +  .++++.+++++.  -+|+    .||-|...-+-.-+|.|=+.=.+. .+|-       +.+|.++
T Consensus        85 GA~FiVSP~~--~--~~vi~~a~~~~i~~iPGv----~TpsEi~~A~~~G~~~vKlFPA~~-~GG~-------~ylkal~  148 (210)
T PRK07455         85 GAQFCFTPHV--D--LELIQAAVAADIPIIPGA----LTPTEIVTAWQAGASCVKVFPVQA-VGGA-------DYIKSLQ  148 (210)
T ss_pred             CCCEEECCCC--C--HHHHHHHHHCCCCEECCC----CCHHHHHHHHHCCCCEEEECCCHH-CCCH-------HHHHHHH
T ss_conf             9999986888--8--999999998299765886----999999999986998477505132-0679-------9999986


Q ss_pred             HHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             5431386526981589988999999679989997426637899
Q gi|254780975|r  163 ALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       163 ~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      .-++  ++++..-||||.+|+..+.++|+..++.||.+|..+.
T Consensus       149 ~p~p--~i~~~ptGGV~~~n~~~yl~ag~~~vg~Gs~l~~~~~  189 (210)
T PRK07455        149 GPLG--HIPLIPTGGVTLENAQAFIQAGAIAVGLSSQLFPKTL  189 (210)
T ss_pred             CCCC--CCCEEECCCCCHHHHHHHHHCCCEEEEECHHHCCHHH
T ss_conf             5489--9938878998988899999689979998846189888


No 95 
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.13  E-value=0.00019  Score=48.80  Aligned_cols=166  Identities=19%  Similarity=0.306  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEE---------EEEEEECCHHHHHHCCCCCC
Q ss_conf             999999999996599899997342634584341789999864125641685---------67885120336764047760
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDC---------HLMISSIDSHINIIADAGCD   87 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dv---------HLMv~~P~~~i~~~~~~g~d   87 (224)
                      ..+.+.-..+..+|+.-+-+.            |++.++.+|+.+++|+==         -..+..-.+-++.+.++|+|
T Consensus        27 ~im~~mA~Aa~~gGA~giR~~------------~~~dI~aIk~~v~lPIIGi~K~~~~~s~VyITPt~~ev~~l~~aGad   94 (219)
T cd04729          27 EIMAAMALAAVQGGAVGIRAN------------GVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGAD   94 (219)
T ss_pred             HHHHHHHHHHHHCCCEEEEEC------------CHHHHHHHHHCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHCCCC
T ss_conf             899999999997896399808------------98899999832899889999568899984566889999999985999


Q ss_pred             EEEEECCCCC-----CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEE-CCCCCCCC--CCHHHHHHH
Q ss_conf             7999706642-----158999867764982599852333447899886201402899830-67765332--201357789
Q gi|254780975|r   88 IITFHPESSP-----HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVN-PGFGGQQL--IESTIPKIR  159 (224)
Q Consensus        88 ~i~~H~E~~~-----~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~-PG~~Gq~f--~~~~l~kI~  159 (224)
                      +|.+-+-.-+     .+.++++.||+.+ ..-+.=..+|--+-+.-.---+|+|   +.+ -||....-  .+.-++-++
T Consensus        95 iIA~DaT~R~RP~g~~l~~~i~~i~~~~-~~l~MAD~st~ee~~~A~~~G~D~v---gTTL~GYT~~t~~~~~PD~~lv~  170 (219)
T cd04729          95 IIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAKLGFDII---GTTLSGYTEETAKTEDPDFELLK  170 (219)
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHH-CCEEEEECCCHHHHHHHHHCCCCEE---ECCCCCCCCCCCCCCCCCHHHHH
T ss_conf             9999467887989978999999999986-9778875488999999998499899---70214567787889998789999


Q ss_pred             HHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHH
Q ss_conf             98654313865269815899-8899999967998999742663
Q gi|254780975|r  160 QAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       160 ~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif  201 (224)
                      ++++..   +..+...|+++ .+.+.+..++||+.+|+||||=
T Consensus       171 ~l~~~~---~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsAIT  210 (219)
T cd04729         171 ELRKAL---GIPVIAEGRINSPEQAAKALELGADAVVVGSAIT  210 (219)
T ss_pred             HHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCC
T ss_conf             999975---9939970698999999999983998999895438


No 96 
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.11  E-value=0.001  Score=44.01  Aligned_cols=175  Identities=15%  Similarity=0.224  Sum_probs=110.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEEC
Q ss_conf             58899999999999659989999734263458434178999986412564168567885120336764047760799970
Q gi|254780975|r   14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHP   93 (224)
Q Consensus        14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~   93 (224)
                      .|+.++.+..   .+. ++++|+==.||..- +-.-..+.++.+.+.+..|+.+-==+.+ ..-++.+.+.|++.+.+-.
T Consensus        30 ~dP~~~A~~~---~~~-a~~lhivDLd~a~~-g~~~n~~~I~~i~~~~~~piqvGGGIrs-~e~i~~~l~~Ga~kViigt  103 (228)
T PRK04128         30 GDPVEIALRF---SEY-VDKIHVVDLDGAFE-GKPKNLDVVKNIIEETGLKVQVGGGFRT-YESIKDAYEIGVENVIIGT  103 (228)
T ss_pred             CCHHHHHHHH---HHC-CCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCEEEECCCCCC-HHHHHHHHHCCCCEEEECC
T ss_conf             8999999999---966-99899998803014-9832699999998654962897386077-9999999968997698145


Q ss_pred             CCCCCHHHHHHHHHHCCCEEEEEEE--------------CCCCHH-HHHHHHHHCCEEEEEEEE-CCCCCCCCCCHHHHH
Q ss_conf             6642158999867764982599852--------------333447-899886201402899830-677653322013577
Q gi|254780975|r   94 ESSPHIRRSLRTIHAMGKKTGVAIN--------------PETPVA-ILEDVIDEIDMILIMTVN-PGFGGQQLIESTIPK  157 (224)
Q Consensus        94 E~~~~~~~~i~~i~~~g~k~Giai~--------------p~T~~~-~i~~~l~~~D~vliM~V~-PG~~Gq~f~~~~l~k  157 (224)
                      ++. +++ .++.+.+..-+.-+++.              ....++ .++.+-..+..+++..+. -|-. |.     ++.
T Consensus       104 ~a~-~~~-~l~~~~~~~~~ivvslD~k~~~v~~~gw~~~~~~~~~~~~~~~~~~~~~ii~tdI~~dGt~-~G-----~~~  175 (228)
T PRK04128        104 KAF-DIE-FLEKITSEFNGITVSLDVKGGRIATKGWLEESSIKVEDAYKMLRNYVNRFIYTSIERDGTL-TG-----IEN  175 (228)
T ss_pred             CCC-CHH-HHHHHHHHCCCCCEEEECCCCEEECCCCEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCC-CC-----HHH
T ss_conf             125-808-9999997264763688713786852684888998899999999863845376312654300-38-----899


Q ss_pred             HHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHH
Q ss_conf             8998654313865269815899-8899999967998999742663789989
Q gi|254780975|r  158 IRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEI  207 (224)
Q Consensus       158 I~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~  207 (224)
                      ++   ++..  +.++.+-|||+ .+.+..+.+.|++-+++|+|++...=..
T Consensus       176 ~~---~~~~--~~~iiasGGv~s~~Dl~~l~~~g~~gvivG~Al~~g~i~l  221 (228)
T PRK04128        176 IE---RFWG--DEEFIYAGGVSSIEDVKKLAEIGFSGAIIGKALYEGRISL  221 (228)
T ss_pred             HH---HHCC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCCH
T ss_conf             99---8616--8968987898999999999967998999985385699789


No 97 
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=98.08  E-value=0.00048  Score=46.14  Aligned_cols=163  Identities=13%  Similarity=0.109  Sum_probs=108.6

Q ss_pred             HHHHHHHHCCCCEEEEEEECCEECCCC--CCCHHHHHHHHHCCCCEE-EEEEEEEECCHHHHHH-CCCCCCEEEEECCCC
Q ss_conf             999999965998999973426345843--417899998641256416-8567885120336764-047760799970664
Q gi|254780975|r   21 EEISNITKAGAKQIHFDVMDGCFVPNI--SFGADVIRSLRSYSDSVF-DCHLMISSIDSHINII-ADAGCDIITFHPESS   96 (224)
Q Consensus        21 ~~i~~l~~~~~d~iHiDImDg~fvpn~--~~~~~~i~~i~~~t~~~~-dvHLMv~~P~~~i~~~-~~~g~d~i~~H~E~~   96 (224)
                      ++...+.++|+|++=+     .|+|.-  ..+++..+.|.+  ..|+ -|-+.|+.+...+..+ ...+.|+|=+|-+..
T Consensus       269 eDA~~a~~~GAD~iGf-----IF~~~SpR~Vs~e~Ak~I~~--~~pi~~VgVFvn~~~~~I~~i~~~~~ld~VQLHG~E~  341 (459)
T PRK09427        269 QDAKAAYDAGAVYGGL-----IFVEKSPRYVSLEQAQEIIA--AAPLRYVGVFRNADIEDVVDIAKVLSLAAVQLHGSED  341 (459)
T ss_pred             HHHHHHHHCCCCEEEE-----EEECCCCCCCCHHHHHHHHH--HCCCCEEEEECCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             9999999849998989-----97269888799999999998--6899879997489999999999838998899899999


Q ss_pred             CCHHHHHHHHHHC---CCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEE---CCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             2158999867764---982599852333447899886201402899830---6776533220135778998654313865
Q gi|254780975|r   97 PHIRRSLRTIHAM---GKKTGVAINPETPVAILEDVIDEIDMILIMTVN---PGFGGQQLIESTIPKIRQAKALIGKRSI  170 (224)
Q Consensus        97 ~~~~~~i~~i~~~---g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~---PG~~Gq~f~~~~l~kI~~l~~~~~~~~~  170 (224)
                      .  . .+..++..   ++++--+++.......  ...+.+|++|+=+-.   .|-+|+.|.-+.+.+      +.   ..
T Consensus       342 ~--~-~i~~lk~~~~~~i~i~ka~~v~~~~~~--~~~~~~d~~LlDs~~~~~~GGtG~~fDW~~l~~------~~---~~  407 (459)
T PRK09427        342 Q--A-YIDALREALPKNCQIWKAVSVDDTLPA--RDLQNVDRYLLDSKVGNGQGGTGQTFDWSLLPG------QS---LD  407 (459)
T ss_pred             H--H-HHHHHHHHCCCCCEEEEEEECCCCCCC--CHHCCCCEEEECCCCCCCCCCCEEEECHHHCCC------CC---CC
T ss_conf             9--9-999999756888359998513554440--032279989981899999996834863565004------55---89


Q ss_pred             EEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             2698158998899999967998999742663789
Q gi|254780975|r  171 SLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       171 ~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      ++.+-||+|.+|+.++.+.++.-+=+.|.+=.++
T Consensus       408 ~~iLAGGL~peNV~eAi~~~p~gVDVSSGVE~~p  441 (459)
T PRK09427        408 NVLLAGGLNADNCAQAAQLGCAGLDFNSGVESAP  441 (459)
T ss_pred             CEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             8899766998999999956999999165318999


No 98 
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=98.08  E-value=0.00024  Score=48.10  Aligned_cols=124  Identities=16%  Similarity=0.271  Sum_probs=92.0

Q ss_pred             CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECC-CCCCCCC
Q ss_conf             2033676404776079997066421589998677649825998523334478998862-0140289983067-7653322
Q gi|254780975|r   74 IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPG-FGGQQLI  151 (224)
Q Consensus        74 P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG-~~Gq~f~  151 (224)
                      ...+++.+.+.+++.++++.-.-.  ...++.+++.|.++....   |.++......+ -+|.|.+-+.+.| ..|....
T Consensus       103 ~~~~~~~~~~~~~~~v~~~~G~p~--~~~v~~~~~~G~~v~~~v---~s~~~A~~a~~~G~D~iV~qG~eAGGH~G~~~~  177 (330)
T pfam03060       103 YGDDDDSLKDAKPKVVSFGFGLPP--EDVIERLKESGTKVIPTV---SSAKEARKAEAAGADAVVAQGPEAGGHRGTEVG  177 (330)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCH--HHHHHHHHHCCCEEEEEC---CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf             799999999749999998998982--799999998799899981---899999999981999899966766777888777


Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             013577899865431386526981589-988999999679989997426637899
Q gi|254780975|r  152 ESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       152 ~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      ..++.-+.++++..   ++.+...||| +-+.+......||+-+.+||...-.+.
T Consensus       178 ~~~~~L~~~v~~~~---~iPvIaAGGI~dg~~iaaalalGA~gV~mGTrFlat~E  229 (330)
T pfam03060       178 TGTFLLVPTVVDAV---DIPVIAAGGIADGRGIAAALALGAEGVQIGTRFLATKE  229 (330)
T ss_pred             CCHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEECCEEEECCC
T ss_conf             30777789999871---69778526628999999999679989997130011577


No 99 
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.08  E-value=0.00028  Score=47.62  Aligned_cols=191  Identities=19%  Similarity=0.215  Sum_probs=128.1

Q ss_pred             ECHHH--HCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECC---HHHHHH
Q ss_conf             81706--3258899999999999659989999734263458434178999986412564168567885120---336764
Q gi|254780975|r    7 IVPSI--LAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSID---SHINII   81 (224)
Q Consensus         7 IspSi--l~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~---~~i~~~   81 (224)
                      =|||-  +..+ .+..+..+..+++|+.-+-+ ..|..|   |.=+.+.+..+|+.+++|+    +.+|..   ..+.+-
T Consensus        59 aSPS~G~i~~~-~dp~~~A~~Y~~~GA~aiSV-LTe~~~---F~Gs~~~L~~vr~~~~lPi----LrKDFIid~~QI~ea  129 (261)
T PRK00278         59 ASPSKGVIRED-FDPVEIAKAYEEGGAACLSV-LTDERF---FQGSFEYLRAARAAVSLPV----LRKDFIIDPYQIYEA  129 (261)
T ss_pred             CCCCCCCCCCC-CCHHHHHHHHHHCCCCEEEE-EECCCC---CCCCHHHHHHHHHHCCCCE----EEEHEECCHHHHHHH
T ss_conf             89999986887-99999999999779968999-513032---4887999999998669987----720101769999999


Q ss_pred             CCCCCCEEEEECCCCC--CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             0477607999706642--15899986776498259985233344789988620140289983067765332201357789
Q gi|254780975|r   82 ADAGCDIITFHPESSP--HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIR  159 (224)
Q Consensus        82 ~~~g~d~i~~H~E~~~--~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~  159 (224)
                      ..+|||.|..-+....  ++.+.++.+++.|..+=+=++-...++.....  ..+   +.+||-.-= ..|.- .+++-.
T Consensus       130 ~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~--~a~---iIGINnRnL-~t~~v-d~~~~~  202 (261)
T PRK00278        130 RAAGADAILLIVAALDDEQLKELLDLAHELGLDVLVEVHDEEELERALKL--GAP---LIGINNRNL-KTFEV-DLDTTE  202 (261)
T ss_pred             HHCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC--CCC---EEEEECCCC-HHCEE-CHHHHH
T ss_conf             98189857898875589999999999998299079776899999999847--998---898746771-12003-789999


Q ss_pred             HHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf             98654313865269815899-88999999679989997426637899899999999
Q gi|254780975|r  160 QAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLN  214 (224)
Q Consensus       160 ~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~  214 (224)
                      ++...+++ +..+..-+||+ .+.+..+.++|+|.+.+|+++-+++||.+..+.+.
T Consensus       203 ~L~~~ip~-~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~l~~L~  257 (261)
T PRK00278        203 RLAPLIPK-DRLLVSESGIFTPEDLKRLAKAGADAFLVGESLMRADDPGAALRELF  257 (261)
T ss_pred             HHHHHCCC-CCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
T ss_conf             99964899-98899799999999999999779999998978767999899999997


No 100
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=98.06  E-value=0.0013  Score=43.45  Aligned_cols=176  Identities=22%  Similarity=0.277  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCC--CCCHHHHHHHHHCCC-CEEEEEEEEEECCHHH-HHHCCCCCCEEEEE
Q ss_conf             9999999999965998999973426345843--417899998641256-4168567885120336-76404776079997
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNI--SFGADVIRSLRSYSD-SVFDCHLMISSIDSHI-NIIADAGCDIITFH   92 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~--~~~~~~i~~i~~~t~-~~~dvHLMv~~P~~~i-~~~~~~g~d~i~~H   92 (224)
                      .+++ +++.+.++|+||+=+     .|+|.-  ...++..+.|.+... .+ -|=+.++.+...+ +.....+.|.|=+|
T Consensus        10 t~~e-da~~a~~~gad~iG~-----If~~~SpR~Vs~~~a~~i~~~v~~~~-~VgVf~n~~~~~i~~i~~~~~ld~VQlH   82 (208)
T COG0135          10 TRLE-DAKAAAKAGADYIGF-----IFVPKSPRYVSPEQAREIASAVPKVK-VVGVFVNESIEEILEIAEELGLDAVQLH   82 (208)
T ss_pred             CCHH-HHHHHHHCCCCEEEE-----EECCCCCCCCCHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHHHCCCCEEEEC
T ss_conf             9899-999999769988999-----97479987179999999998278887-7999879998999999983399889988


Q ss_pred             CCCCCCHHHHHHHHHHCC-CEEEEEEECCCC--HHHHHHHHHHCCEEEEEEE---ECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             066421589998677649-825998523334--4789988620140289983---0677653322013577899865431
Q gi|254780975|r   93 PESSPHIRRSLRTIHAMG-KKTGVAINPETP--VAILEDVIDEIDMILIMTV---NPGFGGQQLIESTIPKIRQAKALIG  166 (224)
Q Consensus        93 ~E~~~~~~~~i~~i~~~g-~k~Giai~p~T~--~~~i~~~l~~~D~vliM~V---~PG~~Gq~f~~~~l~kI~~l~~~~~  166 (224)
                      -+...   +.+..+++.+ ..+.-|+.....  .+....+...+|.+|+=+-   .+|-+||.|.-+.+.+.   +    
T Consensus        83 G~e~~---~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~---~----  152 (208)
T COG0135          83 GDEDP---EYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL---R----  152 (208)
T ss_pred             CCCCH---HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCEECHHHCCCC---C----
T ss_conf             98999---9999998534875699998677622445544148774899818887778978867797770542---4----


Q ss_pred             CCCCEEEEECCCCHHHHHHHHHCCC-CEEEECHHHH---CCCCHHHHH
Q ss_conf             3865269815899889999996799-8999742663---789989999
Q gi|254780975|r  167 KRSISLEVDGGVTSRNIKSLVQAGA-DLLVVGSSFF---NQKGEISYA  210 (224)
Q Consensus       167 ~~~~~I~vDGGvn~~~i~~l~~~Ga-d~~V~Gsaif---~~~d~~~~~  210 (224)
                       ...++..-||+|.+|+.+..+.+. ..+=+.|.+=   +.+|+....
T Consensus       153 -~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSSGVE~~pG~KD~~kv~  199 (208)
T COG0135         153 -LSKPVMLAGGLNPDNVAEAIALGPPYGVDVSSGVESSPGIKDPAKVK  199 (208)
T ss_pred             -CCCCEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf             -56987997788989999999835983798155311689988999999


No 101
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.04  E-value=3.5e-05  Score=53.40  Aligned_cols=37  Identities=16%  Similarity=0.498  Sum_probs=18.5

Q ss_pred             CCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             6526981589-988999999679989997426637899
Q gi|254780975|r  169 SISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       169 ~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      ..++++.||| +.+.+..+.++|||.+|+||+.|.+++
T Consensus        73 ~~pi~vGGGIrs~e~~~~~l~~GadkVvigS~a~~n~~  110 (241)
T PRK00748         73 DIPVQLGGGIRDLETVEAYLDAGVARVIIGTAAVKNPE  110 (241)
T ss_pred             CCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCHH
T ss_conf             99999827707499999999769775886471033968


No 102
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=98.03  E-value=0.00024  Score=48.05  Aligned_cols=175  Identities=18%  Similarity=0.220  Sum_probs=119.3

Q ss_pred             CCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHH
Q ss_conf             981881706325889999999999965998999973426345843417899998641-2564168567885120336764
Q gi|254780975|r    3 PSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINII   81 (224)
Q Consensus         3 k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~   81 (224)
                      ++-+|.|=+-..|..+..+..+.|.++|+..+-+-.-.       .-..+.++.+++ ++++.+=+  =+---...++..
T Consensus         6 ~~~~iipV~r~~~~~~a~~~~~al~~~Gi~~iEiTl~t-------~~a~~~I~~l~~~~p~~~iGa--GTV~~~e~~~~a   76 (196)
T pfam01081         6 REAKIVPVIVIKDKEDALPLAEALAAGGIRVLEVTLRT-------PCALDAIRLLRKNRPDALVGA--GTVLNAQQLAEA   76 (196)
T ss_pred             HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHHCCCCEEEE--EECCCHHHHHHH
T ss_conf             66997999977999999999999998799889994798-------279999999996499967999--837689999999


Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECC-CCCCCCCCHHHHHH
Q ss_conf             047760799970664215899986776498--259985233344789988620140289983067-76533220135778
Q gi|254780975|r   82 ADAGCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPG-FGGQQLIESTIPKI  158 (224)
Q Consensus        82 ~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG-~~Gq~f~~~~l~kI  158 (224)
                      .++|++.+.-..  .+  .++++.++++|.  -+|+.    ||-|...-+-.-++.|-+   -|. -.|      -.+.+
T Consensus        77 ~~aGA~FivSP~--~~--~~v~~~a~~~~i~~iPGv~----TpsEi~~A~~~G~~~vKl---FPA~~~G------g~~~l  139 (196)
T pfam01081        77 AEAGAQFVVSPG--LT--ADLLKHAVDVKIPLIPGVS----TPSEIMLGLDLGLTRFKF---FPAEASG------GVPAI  139 (196)
T ss_pred             HHCCCCEEECCC--CH--HHHHHHHHHCCCCEECCCC----CHHHHHHHHHCCCCEEEE---CCCHHCC------CHHHH
T ss_conf             974999999787--63--9999999973996637859----999999999879998997---8731018------49999


Q ss_pred             HHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             99865431386526981589988999999679989997426637899
Q gi|254780975|r  159 RQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       159 ~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      +.++.-++  +++++.-||||.+|+.+..++|+..++.||.+|..+.
T Consensus       140 kal~~p~p--~~~f~ptGGv~~~N~~~yl~~g~v~~~~GS~l~~~~l  184 (196)
T pfam01081       140 KALAGPFP--QVRFCPTGGIHPANVRDYLALPNILCVGGSWLVPASL  184 (196)
T ss_pred             HHHHCCCC--CCEEEEECCCCHHHHHHHHHCCCEEEEECHHHCCHHH
T ss_conf             99857799--9869980798988899999689869998936489889


No 103
>pfam02581 TMP-TENI Thiamine monophosphate synthase/TENI. Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyses the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI.
Probab=98.03  E-value=0.0003  Score=47.48  Aligned_cols=176  Identities=19%  Similarity=0.152  Sum_probs=102.8

Q ss_pred             ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf             81706325889999999999965998999973426345843417899998641256416856788512033676404776
Q gi|254780975|r    7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC   86 (224)
Q Consensus         7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~   86 (224)
                      |+|--++.  .++.+.++.+-+.|++.+|+-.-+-.-   -. -.+..+.+++..+ ...+-|.+++.......   .|+
T Consensus         4 It~~~~~~--~~~~~~~~~~l~~Gv~~vqlR~K~~~~---~~-~~~~a~~l~~i~~-~~~~~liin~~~~lA~~---~~~   73 (180)
T pfam02581         4 VTDPGLDG--EDLLEVVEEALKGGVTIVQLREKDLDD---RE-LLELAERLRALCR-KYGVPLIINDRVDLALA---VGA   73 (180)
T ss_pred             ECCCCCCC--HHHHHHHHHHHHCCCCEEEECCCCCCH---HH-HHHHHHHHHHHHH-HHCCEEEECCHHHHHHH---HCC
T ss_conf             86997475--479999999998699999987898799---99-9999999999999-82997998785999997---297


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             079997066421589998677649825998523334478998862-0140289983067765332201357789986543
Q gi|254780975|r   87 DIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI  165 (224)
Q Consensus        87 d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~  165 (224)
                      |-  +|....+-...........+..+|.+.+  +. +.+..... .+||+.+=.|-|-.+-....+--++.++++++. 
T Consensus        74 dG--vHL~~~d~~~~~~r~~~~~~~iiG~S~h--~~-~e~~~a~~~gaDYi~~gpvf~T~sK~~~~~~g~~~~~~~~~~-  147 (180)
T pfam02581        74 DG--VHLGQDDLPVAEARELLGPDKIIGVSTH--TL-EEALEAEALGADYIGFGPVFPTPTKPDAPPLGLEGLRAIAEA-  147 (180)
T ss_pred             CE--EECCCCCCCHHHHHHHCCCCCEEEECCC--CH-HHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHH-
T ss_conf             98--9448676679999986497768974478--89-999999871998088747677799999887898999999985-


Q ss_pred             HCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf             13865269815899889999996799899974266
Q gi|254780975|r  166 GKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSF  200 (224)
Q Consensus       166 ~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai  200 (224)
                        .++++.+=||||.+|+.++.++|++.+.+=|+|
T Consensus       148 --~~~Pv~AiGGI~~~n~~~~~~~Ga~gvAvis~i  180 (180)
T pfam02581       148 --VNIPVVAIGGITPENVPEVLEAGADGVAVVSAI  180 (180)
T ss_pred             --CCCCEEEECCCCHHHHHHHHHCCCCEEEEECCC
T ss_conf             --899999990989999999998599889996509


No 104
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.02  E-value=0.00064  Score=45.35  Aligned_cols=173  Identities=20%  Similarity=0.276  Sum_probs=115.9

Q ss_pred             EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEE--EEECCHHHHHHCC
Q ss_conf             88170632588999999999996599899997342634584341789999864125641685678--8512033676404
Q gi|254780975|r    6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLM--ISSIDSHINIIAD   83 (224)
Q Consensus         6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLM--v~~P~~~i~~~~~   83 (224)
                      .|.|=|-+.+..+...-.+.|.++|+..+-+-.--    |+   ..+.++.+++.  +|-++.+=  +---...+++..+
T Consensus        11 plvaIlR~~~~~~a~~~~~al~~~Gi~~iEVTl~t----p~---a~~~I~~l~~~--~~~~~~iGAGTVlt~e~~~~ai~   81 (206)
T PRK09140         11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPLNS----PD---PFDSIAALVKA--LGDDALIGAGTVLSPEQVDRLAD   81 (206)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC----CC---HHHHHHHHHHH--CCCCEEEEEEECCCHHHHHHHHH
T ss_conf             97999958999999999999998699889991799----76---99999999996--79865998620467999999998


Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHCCCE--EEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             77607999706642158999867764982--5998523334478998862014028998306776533220135778998
Q gi|254780975|r   84 AGCDIITFHPESSPHIRRSLRTIHAMGKK--TGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQA  161 (224)
Q Consensus        84 ~g~d~i~~H~E~~~~~~~~i~~i~~~g~k--~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l  161 (224)
                      +|++.+.-..  .+  .+++++++++|.-  +|.    .||-|...-+-.-+|.+-+.   |...   +   -.+-++.+
T Consensus        82 aGA~FiVSP~--~~--~~vi~~a~~~~i~~iPG~----~TPsEi~~A~~~Ga~~vKlF---PA~~---~---Gp~~ikal  144 (206)
T PRK09140         82 AGGRLIVTPN--ID--PEVIRRAVAYGMTVMPGV----ATPTEAFAALRAGADALKLF---PASQ---L---GPAGIKAL  144 (206)
T ss_pred             CCCCEEECCC--CC--HHHHHHHHHCCCCCCCCC----CCHHHHHHHHHCCCCEEEEC---CHHC---C---CHHHHHHH
T ss_conf             5999999999--98--999999998299652785----99999999998598715657---5110---5---99999998


Q ss_pred             HHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             65431386526981589988999999679989997426637899
Q gi|254780975|r  162 KALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       162 ~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      +.-++ .++++.--||||.+|+.++.++|+..+-.||.+|+...
T Consensus       145 ~~p~P-~~~~~~ptGGV~~~N~~~~l~aGa~avG~Gs~L~~~~~  187 (206)
T PRK09140        145 RAVLP-PDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYRPGQ  187 (206)
T ss_pred             HCCCC-CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHCCCCCC
T ss_conf             64389-99989953798888899999869919996065159999


No 105
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.01  E-value=0.00015  Score=49.41  Aligned_cols=154  Identities=15%  Similarity=0.267  Sum_probs=92.9

Q ss_pred             CCCCEEEEEEEEEECCHHH---HHHCCC-CCCEEEEECC-----C--------CCCHHHHHHHHHHCCCEE-EEEEECCC
Q ss_conf             2564168567885120336---764047-7607999706-----6--------421589998677649825-99852333
Q gi|254780975|r   60 YSDSVFDCHLMISSIDSHI---NIIADA-GCDIITFHPE-----S--------SPHIRRSLRTIHAMGKKT-GVAINPET  121 (224)
Q Consensus        60 ~t~~~~dvHLMv~~P~~~i---~~~~~~-g~d~i~~H~E-----~--------~~~~~~~i~~i~~~g~k~-Giai~p~T  121 (224)
                      ..+.|+=+-++..+++.|.   +.+.++ |+|++.+-.-     .        .+.+.++++.+++.-.++ .+=|.|+.
T Consensus        89 ~~~~pvi~si~~~~~~d~~~~~~~l~~~~~ad~ielNiScPn~~~~g~~~~~~~~~l~~i~~~v~~~~~~Pv~vKlsP~~  168 (301)
T PRK07259         89 EFDTPIIANIAGSTPEEYVEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKSVSKVPVIVKLTPNV  168 (301)
T ss_pred             HCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf             06998799737677689999999864556888899965478888526660879999999999998734897799807871


Q ss_pred             -CHHHHHHHHHH--CCEEEEEEE------------------ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-
Q ss_conf             -44789988620--140289983------------------06776533220135778998654313865269815899-
Q gi|254780975|r  122 -PVAILEDVIDE--IDMILIMTV------------------NPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-  179 (224)
Q Consensus       122 -~~~~i~~~l~~--~D~vliM~V------------------~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-  179 (224)
                       .+..+...+..  +|.|.+--.                  .-|.||.+..+.++..|+++++..   ++.|.-=|||. 
T Consensus       169 ~~i~~ia~~~~~~gadgvv~~Nt~~~~~id~~~~~p~~~~~~GGlSG~~l~~~al~~v~~~~~~~---~ipIig~GGI~s  245 (301)
T PRK07259        169 TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVAKAV---DIPIIGMGGIST  245 (301)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCEEEECCCCC
T ss_conf             21999999999759988999567767653235677433578886347335189999999998516---988897679799


Q ss_pred             HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             889999996799899974266378998999999999999
Q gi|254780975|r  180 SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       180 ~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
                      .+.+.+...+||+.+=++|++|..+.  -..+-+++|.+
T Consensus       246 ~~da~e~i~aGAs~VQv~Tav~~Gp~--~~~~i~~~L~~  282 (301)
T PRK07259        246 AEDAIEFMMAGASAVQVGTANFIDPY--AFPEIIEGLEA  282 (301)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHCCCH--HHHHHHHHHHH
T ss_conf             99999999839879872123314906--99999999999


No 106
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=98.01  E-value=0.00075  Score=44.94  Aligned_cols=188  Identities=15%  Similarity=0.174  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCC
Q ss_conf             99999999999659989999734263458434178999986412564168567885120336764047760799970664
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESS   96 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~   96 (224)
                      ..+.+.++...++|+..+++-=-+..--.   | .+.-+.+++.+ -...+-|.|+|   -++-...+|+|   +|.--.
T Consensus        18 ~~l~~vV~~Al~GGvt~VQlRdK~~~~~e---~-~~~a~~l~~l~-~~~gvpliVND---rvdvAla~~Ad---VHlGQ~   86 (738)
T PRK09517         18 EKVAGIVDSAISGGVSVVQLRDKNAGVED---V-RAAAKELKELC-DARGVALVVND---RLDVAVELGLH---VHIGQG   86 (738)
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCCCCHHH---H-HHHHHHHHHHH-HHCCCCEEECC---HHHHHHHCCCC---CEECCC
T ss_conf             98899999999769958996489998899---9-99999999999-87199789728---59999875899---641887


Q ss_pred             CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH-HHCCEEEEEEEECCCCCCCC-CCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             2158999867764982599852333447899886-20140289983067765332-201357789986543138652698
Q gi|254780975|r   97 PHIRRSLRTIHAMGKKTGVAINPETPVAILEDVI-DEIDMILIMTVNPGFGGQQL-IESTIPKIRQAKALIGKRSISLEV  174 (224)
Q Consensus        97 ~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l-~~~D~vliM~V~PG~~Gq~f-~~~~l~kI~~l~~~~~~~~~~I~v  174 (224)
                      +-+-.....+--.+.-.|++.+--..++.....- ..+|||-+=.|-|--.-..- .+-.++.++++++.   .++.+-.
T Consensus        87 Dlp~~~aR~llG~~~iiGlS~~t~~~~~~a~~~~a~~vDYlG~Gpvf~T~TK~da~~~~G~~~l~~i~~~---~~iPvVA  163 (738)
T PRK09517         87 DTPYTQARRLLPAHLELGLTIETLDQLEAVIAQCAETPDVIGIGPVASTATKPDAPPALGVDGIAEIAAV---AQIASVA  163 (738)
T ss_pred             CCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCCEEE
T ss_conf             7999999986599878997259989999998545678987857887789998888878899999999984---7999899


Q ss_pred             ECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             15899889999996799899974266378998999999999999
Q gi|254780975|r  175 DGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       175 DGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
                      =||||.+|+..+..+|+|-+-+=|+|+.++||..+++.|++.-+
T Consensus       164 IGGI~~~n~~~v~~aGadGvAVVSAI~~A~DP~aAaReLr~a~~  207 (738)
T PRK09517        164 IGGVGLRNAAELAATGIDGLCVVSAIMAAPNPAAAARELRTAFQ  207 (738)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHH
T ss_conf             89988888999997499889842344169999999999999997


No 107
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063   1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=97.99  E-value=0.0018  Score=42.56  Aligned_cols=176  Identities=14%  Similarity=0.188  Sum_probs=123.8

Q ss_pred             HHHHHHHHH-CCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf             999999996-5998999973426345843417899998641256416856788512033676404776079997066421
Q gi|254780975|r   20 GEEISNITK-AGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPH   98 (224)
Q Consensus        20 ~~~i~~l~~-~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~   98 (224)
                      .+..+...+ .|+.|||+==.||-+.+... +.+.|++|++.++.|++|== =-.-.+.++++.+.|++++++=.=+.++
T Consensus        31 ~~~A~~~~~~~GA~~iHvVDLDGA~~g~~~-N~~~i~~I~~~~~~~vQvGG-GIRs~e~v~~ll~~Gv~RVI~GT~A~~~  108 (241)
T TIGR00007        31 VEAAKKWEEFQGAKRIHVVDLDGALEGGPV-NLEVIKKIVEELGVPVQVGG-GIRSLEDVEKLLDLGVDRVIIGTAAVEN  108 (241)
T ss_pred             HHHHHHHHHCCCCCEEEEEECCHHHCCCCC-HHHHHHHHHHHCCCCEEECC-CCCCHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf             999999984169715999845100068620-07899999986185179817-5168899999997398579973322108


Q ss_pred             HHHHHHHHHHCC-CEEEEEEE--------------------CCCCHHHHHHHHHHCC-EEEEEE--EE-CCCCCCCCCCH
Q ss_conf             589998677649-82599852--------------------3334478998862014-028998--30-67765332201
Q gi|254780975|r   99 IRRSLRTIHAMG-KKTGVAIN--------------------PETPVAILEDVIDEID-MILIMT--VN-PGFGGQQLIES  153 (224)
Q Consensus        99 ~~~~i~~i~~~g-~k~Giai~--------------------p~T~~~~i~~~l~~~D-~vliM~--V~-PG~~Gq~f~~~  153 (224)
                      ++.+.+++++.+ -++-++|.                    .-|+.+..+.|-+ +. .-.++.  |+ -|.- +..+-+
T Consensus       109 ~~~v~~~~~~~g~~~i~V~lD~~~g~~G~~~V~v~GW~E~s~~~~~~~~~~~~~-~G~~~~ii~TdI~~DGtl-~G~n~~  186 (241)
T TIGR00007       109 PDLVKELLKEYGPERIVVSLDARDGEEGVKEVAVKGWKEKSEVSLEELAKRLEE-LGELEGIIYTDISRDGTL-SGPNFE  186 (241)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHHHH-CCCCCEEEEEEEECCCCE-ECCCCC
T ss_conf             699999999848996599986314887517888740411356279999999851-586336899752006720-078732


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHH--CCCCEEEECHHHHCCC
Q ss_conf             35778998654313865269815899-889999996--7998999742663789
Q gi|254780975|r  154 TIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQ--AGADLLVVGSSFFNQK  204 (224)
Q Consensus       154 ~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~--~Gad~~V~Gsaif~~~  204 (224)
                      .+   +++.+.+  .+..+.+=|||+ .+-+..|.+  .|+.-+|+|+||+...
T Consensus       187 ~~---~~~~~~~--~~~~viaSGGv~s~~D~~~L~~~~~G~~GvIvGkALY~g~  235 (241)
T TIGR00007       187 LT---KELVKAL--VNVPVIASGGVSSIDDLRALKEIELGVYGVIVGKALYEGK  235 (241)
T ss_pred             HH---HHHHHHH--CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
T ss_conf             88---9999873--5841899426578899999997159832799862111688


No 108
>PRK02621 consensus
Probab=97.97  E-value=5.5e-05  Score=52.19  Aligned_cols=38  Identities=34%  Similarity=0.494  Sum_probs=21.2

Q ss_pred             CCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf             65269815899-889999996799899974266378998
Q gi|254780975|r  169 SISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGE  206 (224)
Q Consensus       169 ~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~  206 (224)
                      .+++++-|||+ .+.+..+.++|||.++.||+.+++++.
T Consensus        74 ~ipi~vGGGIrs~e~~~~ll~~GadkVii~s~a~~np~~  112 (254)
T PRK02621         74 FIPLTVGGGISSLEGIKELLRAGADKVSLNSAAVRDPDL  112 (254)
T ss_pred             CCCEEEECCEEEHHHHHHHHHCCCCEEEECCHHHHCCCH
T ss_conf             985899633535799999997499989998867647354


No 109
>PRK06857 consensus
Probab=97.96  E-value=0.00069  Score=45.17  Aligned_cols=171  Identities=18%  Similarity=0.238  Sum_probs=117.5

Q ss_pred             EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             881706325889999999999965998999973426345843417899998641-2564168567885120336764047
Q gi|254780975|r    6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      +|.|=+-..|..+..+-.+.|.++|+..+-+-.-.    |   -..+.++.+++ ++++.+-+  =+---...++...++
T Consensus        13 ~iipVir~~~~~~a~~~~~al~~gGi~~iEiTlrt----~---~a~~~I~~l~~~~p~~~vGa--GTV~~~e~~~~a~~a   83 (209)
T PRK06857         13 KVVPVIAIDDAEDILPLAKVLAENGLPVAEITFRS----A---AAAEAIRLLREAYPDMLIGA--GTVLTPEQVDAAKEA   83 (209)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC----C---CHHHHHHHHHHHCCCCEEEE--EECCCHHHHHHHHHC
T ss_conf             97999975999999999999998799889995899----3---29999999997589948999--937679999999983


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECC--CCCCCCCCHHHHHHHH
Q ss_conf             760799970664215899986776498--259985233344789988620140289983067--7653322013577899
Q gi|254780975|r   85 GCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPG--FGGQQLIESTIPKIRQ  160 (224)
Q Consensus        85 g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG--~~Gq~f~~~~l~kI~~  160 (224)
                      |++.+.-..=  .  .++++++++++.  -+|++    ||-|...-+-.-++.|=+   -|.  .+|.       +-+|.
T Consensus        84 GA~FiVSP~~--~--~~v~~~a~~~~i~~iPGv~----TpsEi~~A~~~G~~~vKl---FPA~~~gG~-------~~lka  145 (209)
T PRK06857         84 GADFIVSPGF--N--PNTVKYCQQLNIPIVPGVN----NPSLVEQALEMGLTTLKF---FPAEASGGV-------NMLKA  145 (209)
T ss_pred             CCCEEECCCC--C--HHHHHHHHHCCCCEECCCC----CHHHHHHHHHCCCCEEEE---CCCCCCCCH-------HHHHH
T ss_conf             9999990899--9--9999999974996547879----999999999879998997---866212669-------99999


Q ss_pred             HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             865431386526981589988999999679989997426637899
Q gi|254780975|r  161 AKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       161 l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      ++.-++  +++++.-||||.+|+..+.++|+=..|.||.+|..+.
T Consensus       146 l~~p~p--~~~~~ptGGV~~~N~~~yl~~~~v~~~gGS~l~~~~~  188 (209)
T PRK06857        146 LLAPYP--NLQIMPTGGINPSNIKDYLAIPNVVACGGTWMVPKKL  188 (209)
T ss_pred             HHCCCC--CCEEEECCCCCHHHHHHHHCCCCEEEEECHHHCCHHH
T ss_conf             865389--9809964898887899998599889998936589999


No 110
>pfam00218 IGPS Indole-3-glycerol phosphate synthase.
Probab=97.96  E-value=0.00094  Score=44.29  Aligned_cols=192  Identities=15%  Similarity=0.190  Sum_probs=126.8

Q ss_pred             ECHHH--HCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             81706--3258899999999999659989999734263458434178999986412564168567885120336764047
Q gi|254780975|r    7 IVPSI--LAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         7 IspSi--l~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      =|||-  ++.+ .+..+..+..+++|+.-+-+ ..|..|   |.=+++.+..+|+.+++|+=.-=-+-+|. .+.+-..+
T Consensus        57 aSPS~G~i~~~-~dp~~iA~~Y~~~GA~aiSV-LTd~~~---F~Gs~~~L~~vr~~v~lPiLrKDFIid~y-QI~ear~~  130 (254)
T pfam00218        57 ASPSKGLIRED-FDPAEIARAYEAAGASAISV-LTEPKY---FQGSLEYLREVREAVSLPVLRKDFIIDEY-QIYEARAY  130 (254)
T ss_pred             CCCCCCCCCCC-CCHHHHHHHHHHCCCCEEEE-ECCCCC---CCCCHHHHHHHHHHCCCCEECCHHEEEHH-HHHHHHHC
T ss_conf             89999986898-99999999999779837998-426786---79879999999986488511141046599-99999980


Q ss_pred             CCCEEEEECCCCCC--HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf             76079997066421--5899986776498259985233344789988620140289983067765332201357789986
Q gi|254780975|r   85 GCDIITFHPESSPH--IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK  162 (224)
Q Consensus        85 g~d~i~~H~E~~~~--~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~  162 (224)
                      |||.|..-+....+  +.+.++..++.|..+=+-++-...++.....  ..+   +.+||-.-= ..|. -.++.-.++.
T Consensus       131 GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~al~~--~a~---iIGINNRnL-~tf~-vd~~~t~~L~  203 (254)
T pfam00218       131 GADTVLLIVAVLSDELLEELYEYARSLGMEPLVEVHNEEELERALAL--GAK---LIGVNNRNL-KTFE-VDLNTTRRLA  203 (254)
T ss_pred             CCCEEEHHHHCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC--CCC---EEEECCCCH-HHHH-CCHHHHHHHH
T ss_conf             88863144711999999999999998488679886899999999848--997---896327884-6510-0579999999


Q ss_pred             HHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
Q ss_conf             5431386526981589-9889999996799899974266378998999999
Q gi|254780975|r  163 ALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKR  212 (224)
Q Consensus       163 ~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~  212 (224)
                      ..++. +..+-.-+|| +.+.+..+.++|+|.+.+|+++-+++||.++.+.
T Consensus       204 ~~ip~-~~~~VsESGI~~~~di~~l~~~G~~~~LIGe~lm~~~dp~~~l~~  253 (254)
T pfam00218       204 PMVPE-DVLLVAESGISTPEDVEKLAKHGANAFLVGESLMRAPDVRAAIRE  253 (254)
T ss_pred             HHCCC-CCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHC
T ss_conf             55898-987998389999999999998799999989687579998999960


No 111
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.95  E-value=0.0005  Score=46.06  Aligned_cols=192  Identities=17%  Similarity=0.196  Sum_probs=127.2

Q ss_pred             ECHHHHC-CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf             8170632-588999999999996599899997342634584341789999864125641685678851203367640477
Q gi|254780975|r    7 IVPSILA-ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAG   85 (224)
Q Consensus         7 IspSil~-~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g   85 (224)
                      =|||--. ....+..+..+..+++|++-+-+ ..|.+|   |.=+.+.++.+|+.+++|+=.-=-+-+| ..+.+-..+|
T Consensus        20 ~SPS~G~i~~~~d~~~~A~~Y~~~GA~aiSV-LTe~~~---F~Gs~~~L~~v~~~~~~PiLrKDFIid~-~QI~ea~~~G   94 (217)
T cd00331          20 ASPSKGLIREDFDPVEIAKAYEKAGAAAISV-LTEPKY---FQGSLEDLRAVREAVSLPVLRKDFIIDP-YQIYEARAAG   94 (217)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE-ECCCCC---CCCCHHHHHHHHHHCCCCEEECCCCCCH-HHHHHHHHCC
T ss_conf             9999885678899999999999779818999-557777---7988999999998479986742321769-9999999819


Q ss_pred             CCEEEEECCCCC--CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECC-CCCCCCCCHHHHHHHHHH
Q ss_conf             607999706642--15899986776498259985233344789988620140289983067-765332201357789986
Q gi|254780975|r   86 CDIITFHPESSP--HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPG-FGGQQLIESTIPKIRQAK  162 (224)
Q Consensus        86 ~d~i~~H~E~~~--~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG-~~Gq~f~~~~l~kI~~l~  162 (224)
                      ||.|.+-+....  ++.++++.+++.|..+=+-++-..+++.....  ..+   +.+||-. ..-  |. -.+++-.++.
T Consensus        95 AdaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~--~a~---iIGINnRdL~t--~~-vd~~~~~~L~  166 (217)
T cd00331          95 ADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALAL--GAK---IIGINNRDLKT--FE-VDLNTTERLA  166 (217)
T ss_pred             CCCHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC--CCC---EEEECCCCCHH--CE-ECHHHHHHHH
T ss_conf             9878798885499999999999999498279885899999999957--998---78421677123--03-4789999999


Q ss_pred             HHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
Q ss_conf             54313865269815899-889999996799899974266378998999999
Q gi|254780975|r  163 ALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKR  212 (224)
Q Consensus       163 ~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~  212 (224)
                      +.+|. +..+-.-+||+ .+.+..+.++|+|.+..|+++.+++||.+..+.
T Consensus       167 ~~ip~-~~~~IsESGI~~~~di~~l~~~G~d~~LIG~sLm~~~~p~~~l~~  216 (217)
T cd00331         167 PLIPK-DVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALRE  216 (217)
T ss_pred             HHCCC-CCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
T ss_conf             64898-988998279999999999998799999989788679998999960


No 112
>PRK08904 consensus
Probab=97.95  E-value=0.00087  Score=44.52  Aligned_cols=187  Identities=18%  Similarity=0.231  Sum_probs=121.4

Q ss_pred             EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             881706325889999999999965998999973426345843417899998641-2564168567885120336764047
Q gi|254780975|r    6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      +|.|=+-..|..+-....+.+.++|+..+-+-.-       ..-..+.++.+++ +++..+-+  =+---...++...++
T Consensus        11 ~iipVir~~~~~~a~~~a~al~~~Gi~~iEiTlr-------tp~a~~~i~~l~~~~p~~~vGa--GTVl~~e~~~~a~~a   81 (207)
T PRK08904         11 AVVPVMAIDDLSTAVDLSRALVEGGIPTLEITLR-------TPVGLDAIRLIAKEVPNAIVGA--GTVTNPEQLKAVEDA   81 (207)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC-------CCHHHHHHHHHHHHCCCCEEEE--EECCCHHHHHHHHHC
T ss_conf             9799997699999999999999879988999579-------9139999999998689876855--313689999999984


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECC--CCCCCCCCHHHHHHHH
Q ss_conf             760799970664215899986776498--259985233344789988620140289983067--7653322013577899
Q gi|254780975|r   85 GCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPG--FGGQQLIESTIPKIRQ  160 (224)
Q Consensus        85 g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG--~~Gq~f~~~~l~kI~~  160 (224)
                      |++.+.-..=  .  .++++++++.|.  -+|++    ||-|...-+-.-.+.|-+   -|+  .+|.       ..+|.
T Consensus        82 GA~FiVSP~~--~--~~v~~~a~~~~i~~iPGv~----TpsEi~~A~~~G~~~vK~---FPA~~~GG~-------~~lka  143 (207)
T PRK08904         82 GAVFAISPGL--H--ESLAKAGHNSGIPLIPGVA----TPGEIQLALEHGIDTLKL---FPAEVVGGK-------AMLKA  143 (207)
T ss_pred             CCCEEECCCC--C--HHHHHHHHHCCCCEECCCC----CHHHHHHHHHCCCCEEEE---CCCHHCCCH-------HHHHH
T ss_conf             9999984899--8--9999999983997657869----999999999879998997---762220889-------99998


Q ss_pred             HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHH-HHHHHHHHHHHHH
Q ss_conf             865431386526981589988999999679989997426637899899-9999999999786
Q gi|254780975|r  161 AKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEIS-YAKRLNDLKKSAL  221 (224)
Q Consensus       161 l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~-~~~~l~~l~~~a~  221 (224)
                      ++.-++  +++++.-||||.+|+.++.++|.-..|.||.+|..+-... -...|.+..+-+.
T Consensus       144 l~~pfp--~i~~~pTGGV~~~N~~~yl~~~~v~~vgGS~l~~~~~i~~~d~~~I~~~a~~a~  203 (207)
T PRK08904        144 LYGPYA--DVRFCPTGGISLATAPEYLALPNVLCVGGSWLTPKEAVKNKDWDTITRLAKEAA  203 (207)
T ss_pred             HHCCCC--CCEEEECCCCCHHHHHHHHHCCCEEEEECHHHCCHHHHHCCCHHHHHHHHHHHH
T ss_conf             746599--980886589898789999818984999881438999997489999999999997


No 113
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.93  E-value=8.4e-05  Score=51.01  Aligned_cols=39  Identities=23%  Similarity=0.406  Sum_probs=23.0

Q ss_pred             CCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf             86526981589-9889999996799899974266378998
Q gi|254780975|r  168 RSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGE  206 (224)
Q Consensus       168 ~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~  206 (224)
                      ..+++++-||| +.+.+..+.+.|||.++.||+.|.+++.
T Consensus        73 ~~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~~~p~~  112 (232)
T TIGR03572        73 CFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENPDL  112 (232)
T ss_pred             CCCCEEEEECEEEHHHHHHHHHCCCCEEEECHHHHHCCHH
T ss_conf             2985899713303899999997699689934545219357


No 114
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.93  E-value=0.00076  Score=44.89  Aligned_cols=170  Identities=15%  Similarity=0.226  Sum_probs=115.1

Q ss_pred             EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             881706325889999999999965998999973426345843417899998641-2564168567885120336764047
Q gi|254780975|r    6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      +|.|=+-..|..+..+..+.|.++|+..+-|-.-       .....+.++.+++ +++..+=+= =|.+ ...++...++
T Consensus        16 ~iipVlr~~~~~~a~~~~~al~~gGi~~iEITlr-------t~~a~~~I~~l~~~~p~~~vGaG-TVl~-~e~~~~a~~a   86 (212)
T PRK06015         16 PVIPVLLIDDVEHAVPLARALARGGLPAIEITLR-------TPAALDAIRAVAAEVEEAIVGAG-TILN-AKQFEDAAKA   86 (212)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC-------CCCHHHHHHHHHHHCCCCEEEEE-ECCC-HHHHHHHHHC
T ss_conf             9799997799999999999999879988999689-------95199999999986999679542-1156-9999999984


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECC--CCCCCCCCHHHHHHHH
Q ss_conf             760799970664215899986776498--259985233344789988620140289983067--7653322013577899
Q gi|254780975|r   85 GCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPG--FGGQQLIESTIPKIRQ  160 (224)
Q Consensus        85 g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG--~~Gq~f~~~~l~kI~~  160 (224)
                      |++.+.-..=  +  .++++++++.|.  -+|.    .||-|...-+-.-++.|-+   -|+  .+|       .+.++.
T Consensus        87 GA~FiVSP~~--~--~~v~~~a~~~~i~~iPGv----~TpsEi~~A~~~G~~~vKl---FPA~~~gG-------~~~lka  148 (212)
T PRK06015         87 GSRFIVSPGT--T--QELLAAANDSDVPLLPGA----ITPSEVMALREEGYTVLKF---FPAEQAGG-------AAFLKA  148 (212)
T ss_pred             CCCEEECCCC--C--HHHHHHHHHCCCCEECCC----CCHHHHHHHHHCCCCEEEE---CCCCCCCC-------HHHHHH
T ss_conf             9989985899--9--999999998399773786----9999999999879998997---84300168-------999999


Q ss_pred             HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             86543138652698158998899999967998999742663789
Q gi|254780975|r  161 AKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       161 l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      ++.-++  +++++.-||||.+|+.++.+++.-..|.||.+|..+
T Consensus       149 l~~p~p--~~~~~ptGGV~~~N~~~yl~~~~v~~vgGs~l~~~~  190 (212)
T PRK06015        149 LSSPLA--GTFFCPTGGISLKNARDYLSLPNVVCVGGSWVAPKE  190 (212)
T ss_pred             HHCCCC--CCCEEECCCCCHHHHHHHHCCCCEEEEECHHHCCHH
T ss_conf             857799--998886289898889999808981999883538999


No 115
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.92  E-value=0.00076  Score=44.87  Aligned_cols=193  Identities=19%  Similarity=0.293  Sum_probs=131.0

Q ss_pred             EECHHH--HCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCC
Q ss_conf             881706--325889999999999965998999973426345843417899998641256416856788512033676404
Q gi|254780975|r    6 QIVPSI--LAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIAD   83 (224)
Q Consensus         6 ~IspSi--l~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~   83 (224)
                      +-|||-  +..|+... +..+..+++|+.-+-+ ..|.+|   |.=+++.++.+|..+.+|+=++=-+-+| ..+..-..
T Consensus        54 kaSPS~G~ir~d~dp~-~ia~~Ye~~GAa~iSV-LTd~~~---F~Gs~e~L~~v~~~v~~PvL~KDFiiD~-yQI~~Ar~  127 (254)
T COG0134          54 KASPSKGLIREDFDPV-EIAKAYEEGGAAAISV-LTDPKY---FQGSFEDLRAVRAAVDLPVLRKDFIIDP-YQIYEARA  127 (254)
T ss_pred             CCCCCCCCCCCCCCHH-HHHHHHHHHCCEEEEE-ECCCCC---CCCCHHHHHHHHHHCCCCEEECCCCCCH-HHHHHHHH
T ss_conf             5799877555559999-9999999739848999-637664---6987899999998558982644677889-99999998


Q ss_pred             CCCCEEEEECCCCCC--HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEE-CCCCCCCCCCHHHHHHHH
Q ss_conf             776079997066421--58999867764982599852333447899886201402899830-677653322013577899
Q gi|254780975|r   84 AGCDIITFHPESSPH--IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVN-PGFGGQQLIESTIPKIRQ  160 (224)
Q Consensus        84 ~g~d~i~~H~E~~~~--~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~-PG~~Gq~f~~~~l~kI~~  160 (224)
                      +|+|.|-+-....++  +.+.....+++|+.+=+-++-.   ++++.-+. .+.-+ .+|| -....-.-.   ++.-.+
T Consensus       128 ~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~---eEl~rAl~-~ga~i-IGINnRdL~tf~vd---l~~t~~  199 (254)
T COG0134         128 AGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNE---EELERALK-LGAKI-IGINNRDLTTLEVD---LETTEK  199 (254)
T ss_pred             CCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCH---HHHHHHHH-CCCCE-EEEECCCCCHHEEC---HHHHHH
T ss_conf             085619999996399999999999997699238997899---99999996-79988-99837884021006---889999


Q ss_pred             HHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf             8654313865269815899-8899999967998999742663789989999999
Q gi|254780975|r  161 AKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL  213 (224)
Q Consensus       161 l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l  213 (224)
                      +..+.++ +..+-.-.||+ .+.+..+..+|+|-+-+|+++-+++|+.++.+.+
T Consensus       200 la~~~p~-~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l  252 (254)
T COG0134         200 LAPLIPK-DVILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALREL  252 (254)
T ss_pred             HHHHCCC-CCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
T ss_conf             8844877-7589961798999999999974899899638885699989999986


No 116
>PRK02747 consensus
Probab=97.92  E-value=9.2e-05  Score=50.75  Aligned_cols=41  Identities=32%  Similarity=0.458  Sum_probs=27.2

Q ss_pred             CCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHH
Q ss_conf             386526981589-98899999967998999742663789989
Q gi|254780975|r  167 KRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEI  207 (224)
Q Consensus       167 ~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~  207 (224)
                      +..+++++-||| +.+.+..+.++|||.++.||+.+++++..
T Consensus        72 ~~~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~~np~l~  113 (257)
T PRK02747         72 QCFMPLTVGGGVRTVDDIRKLLLAGADKVSINSAAVARPEFV  113 (257)
T ss_pred             HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCCHHH
T ss_conf             669988984882073887899876996898344465483477


No 117
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.91  E-value=1e-04  Score=50.53  Aligned_cols=69  Identities=22%  Similarity=0.406  Sum_probs=36.6

Q ss_pred             CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHCCCCHH
Q ss_conf             140289983067765332201357789986543138652698158998-899999967998999742663789989
Q gi|254780975|r  133 IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFNQKGEI  207 (224)
Q Consensus       133 ~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~~~d~~  207 (224)
                      +|++.+.-.+.-+.|.+.+-+.++++.+      +..+++++=|||+. +.+..+.+.|||.+|.||+.|++++..
T Consensus        45 ad~lhlvDld~a~~~~~~n~~~I~~i~~------~~~vpiqvGGGIrs~e~~~~ll~~GadkViigS~a~~np~~i  114 (252)
T PRK13597         45 ADELVFLDISATHEERAILLDVVARVAE------RVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELI  114 (252)
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCCHHH
T ss_conf             9999999564666686637999999986------269828984771308999999856987798326667493789


No 118
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.89  E-value=0.00012  Score=49.98  Aligned_cols=41  Identities=17%  Similarity=0.305  Sum_probs=27.6

Q ss_pred             CCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHH
Q ss_conf             386526981589-98899999967998999742663789989
Q gi|254780975|r  167 KRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEI  207 (224)
Q Consensus       167 ~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~  207 (224)
                      +..+++++=||| +.+.+..+.++|||.++.||+.|.+++..
T Consensus        72 ~~~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~~~p~~i  113 (253)
T PRK01033         72 ECFMPLCYGGGIKTVEQAKRIFSLGVEKVSISTAALEDPKLI  113 (253)
T ss_pred             HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCCHHH
T ss_conf             769988986881216888999867986699998786374165


No 119
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=97.89  E-value=0.0015  Score=43.01  Aligned_cols=175  Identities=23%  Similarity=0.301  Sum_probs=109.7

Q ss_pred             HHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEE---------EEEECCHHHHHHCCCCCCEEEEECC
Q ss_conf             9999659989999734263458434178999986412564168567---------8851203367640477607999706
Q gi|254780975|r   24 SNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHL---------MISSIDSHINIIADAGCDIITFHPE   94 (224)
Q Consensus        24 ~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHL---------Mv~~P~~~i~~~~~~g~d~i~~H~E   94 (224)
                      ....++|+--+-+-            |.+.++.+|+.+++|+===.         .+..-.+-++.+.++|++.|.+-+-
T Consensus        40 ~Aa~~gGAvgiR~~------------gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT  107 (229)
T COG3010          40 LAAEQGGAVGIRIE------------GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDAT  107 (229)
T ss_pred             HHHHHCCCCEEEEC------------CHHHHHHHHHHCCCCEEEEEECCCCCCCCEECCCHHHHHHHHHCCCCEEEEECC
T ss_conf             99985786268612------------065699998617887688880589999935566189999999779909996255


Q ss_pred             CCCCHHHHHHHHHHCCCEEEEEEECCC--CHHHHHHHHHHCCEEEEEEEE-CCCCC--CCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             642158999867764982599852333--447899886201402899830-67765--3322013577899865431386
Q gi|254780975|r   95 SSPHIRRSLRTIHAMGKKTGVAINPET--PVAILEDVIDEIDMILIMTVN-PGFGG--QQLIESTIPKIRQAKALIGKRS  169 (224)
Q Consensus        95 ~~~~~~~~i~~i~~~g~k~Giai~p~T--~~~~i~~~l~~~D~vliM~V~-PG~~G--q~f~~~~l~kI~~l~~~~~~~~  169 (224)
                      .-+.+...++.+-+.-..+|.-+-.+.  .-|.+.-.---+|+|   +.+ -||.+  ..-.+.-+.-++++.+    .+
T Consensus       108 ~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~I---GTTLsGYT~~~~~~~~pDf~lvk~l~~----~~  180 (229)
T COG3010         108 DRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDII---GTTLSGYTGYTEKPTEPDFQLVKQLSD----AG  180 (229)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEE---ECCCCCCCCCCCCCCCCCHHHHHHHHH----CC
T ss_conf             68798435999999733579478732598888888997399678---224201468998778972899999986----79


Q ss_pred             CEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             5269815899-88999999679989997426637899899999999999978
Q gi|254780975|r  170 ISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSA  220 (224)
Q Consensus       170 ~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~~a  220 (224)
                      ..+...|.+| .+.+++..+.||+.+|+||||-   .|....+++.+..|++
T Consensus       181 ~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAIT---Rp~~It~~F~~~ik~~  229 (229)
T COG3010         181 CRVIAEGRYNTPEQAKKAIEIGADAVVVGSAIT---RPEEITQWFVDAIKSA  229 (229)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCEEEEECCCCC---CHHHHHHHHHHHHHCC
T ss_conf             939951787999999999971880899874337---8799999999998429


No 120
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.89  E-value=0.00061  Score=45.52  Aligned_cols=160  Identities=16%  Similarity=0.302  Sum_probs=99.6

Q ss_pred             HHHHHH---HCCCCEEEEEEEEEECCHHH---HHHCCCCCCEEEEECCC-------------CCCHHHHHHHHHHCCCEE
Q ss_conf             999864---12564168567885120336---76404776079997066-------------421589998677649825
Q gi|254780975|r   53 VIRSLR---SYSDSVFDCHLMISSIDSHI---NIIADAGCDIITFHPES-------------SPHIRRSLRTIHAMGKKT  113 (224)
Q Consensus        53 ~i~~i~---~~t~~~~dvHLMv~~P~~~i---~~~~~~g~d~i~~H~E~-------------~~~~~~~i~~i~~~g~k~  113 (224)
                      .++.++   +..+.|+=+-+...+|+.|.   +.+.++|+|++.+-.-+             .+.+.++++.+|+.-.++
T Consensus        77 ~~~~l~~~~~~~~~pvi~si~~~~~~d~~~~~~~~~~~gad~ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk~~~~~P  156 (296)
T cd04740          77 FLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVP  156 (296)
T ss_pred             HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf             99878986356897189981689878999999998864898899978899867636775749999999999998604896


Q ss_pred             -EEEEECCC-CHHHHHHHHHH--CCEEEEE-E-----E-----E-------CCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf             -99852333-44789988620--1402899-8-----3-----0-------67765332201357789986543138652
Q gi|254780975|r  114 -GVAINPET-PVAILEDVIDE--IDMILIM-T-----V-----N-------PGFGGQQLIESTIPKIRQAKALIGKRSIS  171 (224)
Q Consensus       114 -Giai~p~T-~~~~i~~~l~~--~D~vliM-~-----V-----~-------PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~  171 (224)
                       .+=|.|+. ++..+...+..  +|.|.+- |     +     .       -|.||.+..+.++..|+++++..   ++.
T Consensus       157 i~vKlsP~~~~i~~ia~~~~~~g~dgiv~~NT~~~~~id~~~~~p~l~~~~GGlSG~~l~~~al~~v~~~~~~~---~ip  233 (296)
T cd04740         157 VIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV---EIP  233 (296)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCC
T ss_conf             69971898000999999999769988999746787663644467552455787686778899999999998545---888


Q ss_pred             EEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf             6981589-988999999679989997426637899899999999999
Q gi|254780975|r  172 LEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK  217 (224)
Q Consensus       172 I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~  217 (224)
                      |.-=||| +.+.+.+...+||+.+=++|++|..++.  ..+-+++|.
T Consensus       234 Iig~GGI~s~~da~e~i~aGAs~VQi~Tai~~Gp~~--i~~i~~~L~  278 (296)
T cd04740         234 IIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEA--FKEIIEGLE  278 (296)
T ss_pred             EEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHH--HHHHHHHHH
T ss_conf             797579799999999998399888723667429279--999999999


No 121
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.89  E-value=0.00011  Score=50.15  Aligned_cols=36  Identities=25%  Similarity=0.585  Sum_probs=17.1

Q ss_pred             CEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             52698158998-8999999679989997426637899
Q gi|254780975|r  170 ISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       170 ~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      .+++++|||+. +.+..+.++||+.+|.||..+.+++
T Consensus        76 ~pi~vGGGIrs~~~i~~~l~~Ga~kvvigs~~~~~~~  112 (240)
T PRK13585         76 VSIQLGGGIRSVEDAASLLDLGVDRVILGTAAIENPE  112 (240)
T ss_pred             CCEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHCCH
T ss_conf             7789978858799999999769989993981131842


No 122
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.88  E-value=0.0002  Score=48.63  Aligned_cols=104  Identities=24%  Similarity=0.440  Sum_probs=69.8

Q ss_pred             CEEEE---ECCCCCCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             07999---70664215899986776498-25998523334478998862-014028998306776533220135778998
Q gi|254780975|r   87 DIITF---HPESSPHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQA  161 (224)
Q Consensus        87 d~i~~---H~E~~~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l  161 (224)
                      |.|-+   |......+.+.++.+|+... ..-+.+-.+| ++.+...++ .+|.||+=         .|.|   +.+++.
T Consensus       153 d~iLikdNHi~~~g~i~~av~~~r~~~~~~~~IeVEv~s-~~e~~~a~~~gadiI~LD---------n~sp---e~~~~~  219 (268)
T cd01572         153 DAVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVET-LEQLKEALEAGADIIMLD---------NMSP---EELREA  219 (268)
T ss_pred             CEEEEEHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHCCCCEEEEC---------CCCH---HHHHHH
T ss_conf             348882427876378999999999867998529999488-999999997599999977---------9999---999999


Q ss_pred             HHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             6543138652698158998899999967998999742663789
Q gi|254780975|r  162 KALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       162 ~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      .+++++ ++.+++-||||.+|+..+.+.|+|.++.|+-..+.+
T Consensus       220 v~~~~~-~v~ieaSGgIn~~ni~~ya~~GvD~Is~g~lt~~~~  261 (268)
T cd01572         220 VALLKG-RVLLEASGGITLENIRAYAETGVDYISVGALTHSAP  261 (268)
T ss_pred             HHHHCC-CEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf             998669-569999899989999999975999998385436995


No 123
>PRK05211 consensus
Probab=97.86  E-value=0.00018  Score=48.91  Aligned_cols=38  Identities=21%  Similarity=0.395  Sum_probs=17.7

Q ss_pred             CCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf             65269815899-889999996799899974266378998
Q gi|254780975|r  169 SISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGE  206 (224)
Q Consensus       169 ~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~  206 (224)
                      ..++++=|||+ .+.+..+.++|||.++.||+.+++|+.
T Consensus        65 ~~Pl~vGGGIrs~~~i~~ll~~GadkViigs~a~~np~l  103 (248)
T PRK05211         65 DIPFCVAGGIKSVEDAREILSFGADKISINSPALADPTL  103 (248)
T ss_pred             CCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCCHH
T ss_conf             985896278013899999998799889989767619618


No 124
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins.  DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.  This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.86  E-value=0.00084  Score=44.60  Aligned_cols=151  Identities=19%  Similarity=0.244  Sum_probs=86.3

Q ss_pred             HHHHHHHCCCCEEEEEEEEEECCHH---HHHHCCCCCCEEEEECCC---CC---------CHHHHHHHHHHCC-CEEEEE
Q ss_conf             9998641256416856788512033---676404776079997066---42---------1589998677649-825998
Q gi|254780975|r   53 VIRSLRSYSDSVFDCHLMISSIDSH---INIIADAGCDIITFHPES---SP---------HIRRSLRTIHAMG-KKTGVA  116 (224)
Q Consensus        53 ~i~~i~~~t~~~~dvHLMv~~P~~~---i~~~~~~g~d~i~~H~E~---~~---------~~~~~i~~i~~~g-~k~Gia  116 (224)
                      .++..++..+.|+=+-++...++.|   .+.+.++|+|.+-+-.-+   ..         ...++++.+|+.- .-+.+=
T Consensus        90 ~i~~~~~~~~~pvI~Si~g~s~ee~~~~a~~~~~~gad~lElNls~~~~~~~~~~~~~~~~~~~iv~~Vk~~~~~Pv~vK  169 (325)
T cd04739          90 LIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVK  169 (325)
T ss_pred             HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             99998753598759871689989999999999764998799965667888554421068899999999986078866995


Q ss_pred             EECCC-CHHHHHHHHHH--CCEEEEE------E-------EE--CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             52333-44789988620--1402899------8-------30--677653322013577899865431386526981589
Q gi|254780975|r  117 INPET-PVAILEDVIDE--IDMILIM------T-------VN--PGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV  178 (224)
Q Consensus       117 i~p~T-~~~~i~~~l~~--~D~vliM------~-------V~--PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv  178 (224)
                      |.|+. .+..+..-+..  +|.|.+-      .       ..  .+++|....+-.+.-|.++++   +.++.|.-=|||
T Consensus       170 LsP~~~di~~ia~aa~~~GAdgi~liNT~~~~~id~~~~~~~~~~~lSg~~~~~~alr~v~~~~~---~~~ipIiG~GGI  246 (325)
T cd04739         170 LSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSG---RVKASLAASGGV  246 (325)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHC---CCCCCEEEECCC
T ss_conf             39983009999999997599889973576656421676415368774575300688999999964---689898888895


Q ss_pred             C-HHHHHHHHHCCCCEEEECHHHHCC-CCH
Q ss_conf             9-889999996799899974266378-998
Q gi|254780975|r  179 T-SRNIKSLVQAGADLLVVGSSFFNQ-KGE  206 (224)
Q Consensus       179 n-~~~i~~l~~~Gad~~V~Gsaif~~-~d~  206 (224)
                      . .+.+-+..-+||+.+=+||+++.. ++.
T Consensus       247 ~s~~Da~e~ilAGAsaVQv~TA~~~~G~~i  276 (325)
T cd04739         247 HDAEDVVKYLLAGADVVMTTSALLRHGPDY  276 (325)
T ss_pred             CCHHHHHHHHHCCCCHHHEEHHHHHHCCHH
T ss_conf             989999999980988761432346418379


No 125
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.86  E-value=0.002  Score=42.19  Aligned_cols=184  Identities=18%  Similarity=0.200  Sum_probs=118.6

Q ss_pred             EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC-CCCEEEEEEEE--EECCHHHHHHC
Q ss_conf             8817063258899999999999659989999734263458434178999986412-56416856788--51203367640
Q gi|254780975|r    6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY-SDSVFDCHLMI--SSIDSHINIIA   82 (224)
Q Consensus         6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv--~~P~~~i~~~~   82 (224)
                      +|.|=+-..|..+...-.+.|.++|+..+-|-.-       .--..+.++.+++. .+.| |+.+=+  ---...++...
T Consensus        14 ~iiaVlr~~~~~~a~~~~~al~~gGi~~iEITl~-------tp~a~~~i~~l~~~~~~~p-~~~iGaGTV~~~e~~~~a~   85 (209)
T PRK06552         14 GLVAVVRGESKEEALKISLAVIKGGIKAIEVTYT-------NPFASEVIKELVERYKDDP-EVLIGAGTVLDAVTARQAI   85 (209)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC-------CCCHHHHHHHHHHHHCCCC-CEEEEEECCCCHHHHHHHH
T ss_conf             9799997289999999999999879988999678-------9759999999999817799-8189887274899999999


Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHCCCE--EEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             477607999706642158999867764982--599852333447899886201402899830677653322013577899
Q gi|254780975|r   83 DAGCDIITFHPESSPHIRRSLRTIHAMGKK--TGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQ  160 (224)
Q Consensus        83 ~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k--~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~  160 (224)
                      ++|++.+.-..  .+  .+++++++++|.-  +|.    .||-|...-+-.-++.|-+   =|+...      -.+-++.
T Consensus        86 ~aGA~FiVSP~--~~--~~v~~~a~~~~i~~iPG~----~TpsEi~~A~~~Ga~~vKl---FPA~~~------G~~yika  148 (209)
T PRK06552         86 LAGAQFIVSPS--FN--RETAKICNRYQIPYLPGC----MTVTEIVTALEAGVDIVKL---FPGSTV------GPSFISA  148 (209)
T ss_pred             HCCCCEEECCC--CC--HHHHHHHHHCCCCEECCC----CCHHHHHHHHHCCCCEEEE---CCHHHC------CHHHHHH
T ss_conf             85998897699--98--999999998599641797----9999999999869995885---833324------8999999


Q ss_pred             HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             865431386526981589988999999679989997426637899899999999999978
Q gi|254780975|r  161 AKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSA  220 (224)
Q Consensus       161 l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~~a  220 (224)
                      ++.-++  ++++..=||||.+|+.++.++|+..+-+||.+++.   . ....+.++.+.|
T Consensus       149 l~~p~p--~~~~~ptGGV~~~N~~~~l~aG~~~vgvGs~l~~~---~-~~~d~~~I~~~A  202 (209)
T PRK06552        149 IKGPLP--QVNIMVTGGVSLDNVKDWFAAGADAVGIGGELNKL---A-SQGDYDLITEKA  202 (209)
T ss_pred             HHCCCC--CCCEEECCCCCHHHHHHHHHCCCCEEEECHHHCCC---H-HCCCHHHHHHHH
T ss_conf             866489--99288638999888999998799889986577082---5-418999999999


No 126
>PRK04281 consensus
Probab=97.86  E-value=0.00012  Score=50.02  Aligned_cols=40  Identities=33%  Similarity=0.489  Sum_probs=23.7

Q ss_pred             CCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf             386526981589-9889999996799899974266378998
Q gi|254780975|r  167 KRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGE  206 (224)
Q Consensus       167 ~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~  206 (224)
                      +..+++++-||| +.+.+..+.++|||.++.||+.|++++.
T Consensus        72 ~~~vpi~vGGGIrs~e~~~~ll~~GadkViigs~a~~np~~  112 (254)
T PRK04281         72 QVFIPLTVGGGVRTVADIRRLLNAGADKVSINTAAVTRPDL  112 (254)
T ss_pred             HCCCCEEEECCEEECHHHHHHHHCCCCEEEECHHHHHCCHH
T ss_conf             07962899777545188999997699889977767649267


No 127
>PRK03220 consensus
Probab=97.86  E-value=0.00013  Score=49.78  Aligned_cols=81  Identities=23%  Similarity=0.368  Sum_probs=50.0

Q ss_pred             CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECH
Q ss_conf             344789988620-14028998306776533220135778998654313865269815899-8899999967998999742
Q gi|254780975|r  121 TPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGS  198 (224)
Q Consensus       121 T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gs  198 (224)
                      .|++..+.|-+. +|++.+.-.+.-+.|++-+-+.++++.+      +..+++++-|||+ .+++..+.++|||.+|.||
T Consensus        32 dP~~~a~~~~~~G~d~lhivDld~a~~g~~~n~~~I~~i~~------~~~~pi~vGGGIrs~e~~~~ll~~GadkVvigs  105 (257)
T PRK03220         32 DPVELAAVYDAEGADELTFLDVTASSSGRATMLDVVRRTAE------QVFIPLTVGGGVRTVEDVDSLLRAGADKVSVNT  105 (257)
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH------CCCCCEEEECCCCCHHHHHHHHHCCCCEEECHH
T ss_conf             99999999998699989999088875676307999999985------069648984785879999999981975087206


Q ss_pred             HHHCCCCHH
Q ss_conf             663789989
Q gi|254780975|r  199 SFFNQKGEI  207 (224)
Q Consensus       199 aif~~~d~~  207 (224)
                      +.|.+++..
T Consensus       106 ~a~~~p~~~  114 (257)
T PRK03220        106 AAIARPELL  114 (257)
T ss_pred             HHHHCCHHH
T ss_conf             677594777


No 128
>PRK02145 consensus
Probab=97.85  E-value=0.00013  Score=49.79  Aligned_cols=81  Identities=26%  Similarity=0.405  Sum_probs=42.5

Q ss_pred             CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECH
Q ss_conf             344789988620-14028998306776533220135778998654313865269815899-8899999967998999742
Q gi|254780975|r  121 TPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGS  198 (224)
Q Consensus       121 T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gs  198 (224)
                      -|++..+.|-.. +|++.+.-.+..+.|.+.+-..++++.   +   +..+++++-|||+ .+.+..+.++|||.++.||
T Consensus        32 dP~~~a~~~~~~GadelhivDld~a~~~~~~~~~~I~~i~---~---~~~iPi~vGGGIrs~e~~~~ll~~GadkVii~s  105 (257)
T PRK02145         32 DPVEIARRYDEQGADELTFLDITATSDGRDLILPIIEAVA---S---QVFIPLTVGGGVRAVEDVRRLLNAGADKVSMNS  105 (257)
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHH---H---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHH
T ss_conf             9999999999879998999978887667540899999999---6---568748962773046889999981998898415


Q ss_pred             HHHCCCCHH
Q ss_conf             663789989
Q gi|254780975|r  199 SFFNQKGEI  207 (224)
Q Consensus       199 aif~~~d~~  207 (224)
                      +.+++++..
T Consensus       106 ~a~~np~~v  114 (257)
T PRK02145        106 SAVANPQLV  114 (257)
T ss_pred             HHHHCCCHH
T ss_conf             566593022


No 129
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.85  E-value=0.00015  Score=49.44  Aligned_cols=40  Identities=23%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             EEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf             97342634584341789999864125641685678851203367640477607999
Q gi|254780975|r   36 FDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITF   91 (224)
Q Consensus        36 iDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~   91 (224)
                      +|+.||..|...-|                .-+..+-+|...++.|.+.|+|.+.+
T Consensus        10 idi~~g~~Vk~~~~----------------~~~~~~gdP~~~a~~~~~~gadel~i   49 (253)
T PRK02083         10 LDVKDGRVVKGVNF----------------VNLRDAGDPVELAKRYDEEGADELVF   49 (253)
T ss_pred             EEEECCEEEECCCC----------------CCCEECCCHHHHHHHHHHCCCCEEEE
T ss_conf             99999999978776----------------45268889999999999879998999


No 130
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=97.84  E-value=0.00015  Score=49.43  Aligned_cols=35  Identities=29%  Similarity=0.627  Sum_probs=16.0

Q ss_pred             CEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             526981589-98899999967998999742663789
Q gi|254780975|r  170 ISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       170 ~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      .+++++||| +.+.+..+.+.||+.+|.||..+.++
T Consensus        74 ~pi~vgGGIrs~e~~~~~l~~Ga~kvvigs~~~~~~  109 (229)
T pfam00977        74 IPVQVGGGIRSLEDAERLLSAGADKVIIGTAAVKNP  109 (229)
T ss_pred             CCEEEECCEEEHHHHHHHHHCCCCEEEECCCHHHCH
T ss_conf             878996456118999999976998999586043093


No 131
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=97.84  E-value=0.0017  Score=42.67  Aligned_cols=142  Identities=18%  Similarity=0.311  Sum_probs=105.5

Q ss_pred             HHHHHHHHCCCCEEEEEEEEEECC--HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH
Q ss_conf             999986412564168567885120--336764047760799970664215899986776498259985233344789988
Q gi|254780975|r   52 DVIRSLRSYSDSVFDCHLMISSID--SHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDV  129 (224)
Q Consensus        52 ~~i~~i~~~t~~~~dvHLMv~~P~--~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~  129 (224)
                      +.++++++.|+.|+-|.+|+-.|.  .+++.+.+.++..+.++.-   ++.+.+..+++.|.++....   +++..-...
T Consensus        52 ~~i~~~~~~td~P~gvnl~~~~~~~~~~~~~~~e~~v~vv~~~~G---~p~~~~~~~~~~g~~v~~~v---~s~~~A~~a  125 (307)
T TIGR03151        52 KEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAG---NPGKYIPRLKENGVKVIPVV---ASVALAKRM  125 (307)
T ss_pred             HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEECCC---CCHHHHHHHHHCCCEEEEEE---CCHHHHHHH
T ss_conf             999999985279860433323888999999998608982472799---96899999998599799981---899999999


Q ss_pred             HH-HCCEEEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             62-014028998306776-53322013577899865431386526981589-988999999679989997426637899
Q gi|254780975|r  130 ID-EIDMILIMTVNPGFG-GQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       130 l~-~~D~vliM~V~PG~~-Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      .. -+|.|.+-+.+-|-- |+   -.++.-+.++++.   -++.+-..||| +-.-+......||+-+..||...-.++
T Consensus       126 ~~~G~D~iV~qG~EAGGH~G~---~~~~~Lvp~v~d~---~~iPViAAGGI~dgr~iaaalalGA~gV~mGTrFlat~E  198 (307)
T TIGR03151       126 EKAGADAVIAEGMESGGHIGE---LTTMALVPQVVDA---VSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKE  198 (307)
T ss_pred             HHCCCCEEEEECCCCCCCCCC---CCHHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHCCCCEEEECHHHHCCCC
T ss_conf             964999999745544687786---4378779999850---468657641133658899999718847874419771856


No 132
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733   Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway .   TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=97.83  E-value=0.0032  Score=40.87  Aligned_cols=199  Identities=17%  Similarity=0.198  Sum_probs=131.4

Q ss_pred             CHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC---HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             1706325889999999999965998999973426345843417---8999986412564168567885120336764047
Q gi|254780975|r    8 VPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG---ADVIRSLRSYSDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         8 spSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~---~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      +++=+..+..++-+.++...++|++.+++=.=+...-..++=.   .+.-+.+|+.+ -.-+|-|-|+|   .++--...
T Consensus         6 t~~~~~~~~~~~~~~ve~Al~GGV~~~QlR~K~~~~~~~yGE~~~~~~~A~~l~~lc-~~y~~~f~vND---~vdlA~~~   81 (210)
T TIGR00693         6 TDPQLFPDLKDLLARVEAALKGGVTLVQLRDKGSNALQQYGETRERLELAEKLRELC-RKYGVPFIVND---RVDLALAL   81 (210)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEECC---HHHHHHHH
T ss_conf             087467753448999999985896299984058754212585889999999999999-87089768828---39999983


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHH--HHHHCCEEEEEEEECCCCCCCC-CCHHHHHHHHH
Q ss_conf             76079997066421589998677649825998523334478998--8620140289983067765332-20135778998
Q gi|254780975|r   85 GCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILED--VIDEIDMILIMTVNPGFGGQQL-IESTIPKIRQA  161 (224)
Q Consensus        85 g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~--~l~~~D~vliM~V~PG~~Gq~f-~~~~l~kI~~l  161 (224)
                      |||=|  |.--.+-+-.....+--..+..|++.+-.-.+.....  .-+-+|||=+=.+-|=-+=+.- -+-.++-++++
T Consensus        82 ~ADGv--HlGQ~D~p~~~aR~l~G~~~iiG~S~~~~~e~~~a~~C~~~~gaDY~G~Gp~fpT~TK~~~~~~~g~e~l~~~  159 (210)
T TIGR00693        82 GADGV--HLGQDDLPVSEARKLLGPDKIIGVSTHNLEELAEAAACELKEGADYIGVGPIFPTPTKKDAAPPVGLELLREI  159 (210)
T ss_pred             CCCEE--EECCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             79877--6678889989999853899579853379899999998764078988886371158878898776488899999


Q ss_pred             HHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf             6543138652698158998899999967998999742663789989999999
Q gi|254780975|r  162 KALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL  213 (224)
Q Consensus       162 ~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l  213 (224)
                      ++... +.+++-.=|||+.+|++++..+|+|.+.+=|+|+.++|+..+.++|
T Consensus       160 ~~~~~-h~~P~VAIGGI~~~n~~~v~~~G~~~vAVvSaI~~A~d~~~a~~~l  210 (210)
T TIGR00693       160 AATSI-HDIPIVAIGGITLENVAEVLAAGADGVAVVSAIMQAADPKAAAKEL  210 (210)
T ss_pred             HHHCC-CCCCEEEECCCCHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHC
T ss_conf             98617-8876588759887899999972887388865101572289999719


No 133
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=97.83  E-value=0.00056  Score=45.74  Aligned_cols=197  Identities=21%  Similarity=0.299  Sum_probs=109.4

Q ss_pred             HHCCCHHHHHHHHHHHHHCC--CCEEEEEEECCEECCCCC-CCHHHHHHHHHCC-CCEEEEEEE--EEECCHHHHHHCCC
Q ss_conf             63258899999999999659--989999734263458434-1789999864125-641685678--85120336764047
Q gi|254780975|r   11 ILAADFSRLGEEISNITKAG--AKQIHFDVMDGCFVPNIS-FGADVIRSLRSYS-DSVFDCHLM--ISSIDSHINIIADA   84 (224)
Q Consensus        11 il~~d~~~l~~~i~~l~~~~--~d~iHiDImDg~fvpn~~-~~~~~i~~i~~~t-~~~~dvHLM--v~~P~~~i~~~~~~   84 (224)
                      +.+.|+...++.++.+++.+  ++++-+      .-|.++ +|+++++++++.. ...+|.-+-  =+.-..+.+.+.+.
T Consensus        15 ivaLD~~~~~~~~~~~~~~~~~~~~~Kv------g~~l~~~~g~~~~~el~~~~~~VflDlK~~DIpnT~~~~~~~~~~~   88 (240)
T COG0284          15 IVALDVPTEEEALAFVDKLGPTVDFVKV------GKPLVAFFGADILEELKARGKKVFLDLKLADIPNTVALAAKAAADL   88 (240)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCEEEE------CHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf             9997899779999999971020318997------6588985138999999970773587410056367999999986543


Q ss_pred             CCCEEEEECCCCCC-HHHHHHHHHHCC-CEEEEEEECCCCHHHHHH---HHHHCCEEEEEE---EECCCCCCCCCCHHHH
Q ss_conf             76079997066421-589998677649-825998523334478998---862014028998---3067765332201357
Q gi|254780975|r   85 GCDIITFHPESSPH-IRRSLRTIHAMG-KKTGVAINPETPVAILED---VIDEIDMILIMT---VNPGFGGQQLIESTIP  156 (224)
Q Consensus        85 g~d~i~~H~E~~~~-~~~~i~~i~~~g-~k~Giai~p~T~~~~i~~---~l~~~D~vliM~---V~PG~~Gq~f~~~~l~  156 (224)
                      |+|++++|.-.-.+ +....+...+.+ .-.+++.++++.-..+..   ..+--+.|+-++   -..|..|-.-.+.-. 
T Consensus        89 g~d~vtvH~~~G~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~~~e~-  167 (240)
T COG0284          89 GADAVTVHAFGGFDMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAEEV-  167 (240)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHH-
T ss_conf             7848997076788799999998864386699999579801666654122420899999999872437835787288888-


Q ss_pred             HHHHHHHHHHCCCCE-----EEE--ECCCCHH--HHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf             789986543138652-----698--1589988--999999679989997426637899899999999999
Q gi|254780975|r  157 KIRQAKALIGKRSIS-----LEV--DGGVTSR--NIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK  217 (224)
Q Consensus       157 kI~~l~~~~~~~~~~-----I~v--DGGvn~~--~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~  217 (224)
                        +++|+..+ .++.     |..  +||=-..  |......+|+|.+|+|..|+.++||.+.++.+....
T Consensus       168 --~~ir~~~g-~~~~iltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~  234 (240)
T COG0284         168 --AAIREILG-PDFLILTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRPITQAGDPVAAARAIAREI  234 (240)
T ss_pred             --HHHHHHCC-CCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
T ss_conf             --89998538-89679888727676777833444989997558978997712323898699999999999


No 134
>PRK00830 consensus
Probab=97.82  E-value=9.9e-05  Score=50.54  Aligned_cols=82  Identities=22%  Similarity=0.421  Sum_probs=46.3

Q ss_pred             CCCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEEC
Q ss_conf             3344789988620-140289983067765332201357789986543138652698158998-89999996799899974
Q gi|254780975|r  120 ETPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVG  197 (224)
Q Consensus       120 ~T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~G  197 (224)
                      +-|++..+.|-+. +|.+.+.-.+.-+.|++-+-+.+++|.   +   +-..+|++=|||+. +.+..+.++|||.+|.|
T Consensus        34 gdP~~~ak~~~~~gadelhivDld~a~~g~~~~~~~I~~i~---~---~~~~pi~vGGGIrs~e~~~~ll~~GadkVvIg  107 (273)
T PRK00830         34 GDPVELAKRYYEDGADELVFLDITASHEGRATMIDVIERTA---E---EVFIPLTVGGGIRSIEDIRQILRAGADKVSVN  107 (273)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHH---H---HCCCCEEEECCEEECCCHHHHHHCCCCEEECH
T ss_conf             89999999999879998999953246468842799999999---8---66995896088437732899997698639837


Q ss_pred             HHHHCCCCHH
Q ss_conf             2663789989
Q gi|254780975|r  198 SSFFNQKGEI  207 (224)
Q Consensus       198 saif~~~d~~  207 (224)
                      |+.+++++..
T Consensus       108 S~a~~np~~v  117 (273)
T PRK00830        108 TAAVKNPEFI  117 (273)
T ss_pred             HHHHHCCHHH
T ss_conf             9898590778


No 135
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=97.82  E-value=0.0027  Score=41.39  Aligned_cols=125  Identities=23%  Similarity=0.356  Sum_probs=82.7

Q ss_pred             CHHHHHHCCCCCCEEEEECCCC--CCHHHHHHHHHHCCCEEE-EEEECCCCHHHHHHHHHH-CCEEEEEEEECCC-----
Q ss_conf             0336764047760799970664--215899986776498259-985233344789988620-1402899830677-----
Q gi|254780975|r   75 DSHINIIADAGCDIITFHPESS--PHIRRSLRTIHAMGKKTG-VAINPETPVAILEDVIDE-IDMILIMTVNPGF-----  145 (224)
Q Consensus        75 ~~~i~~~~~~g~d~i~~H~E~~--~~~~~~i~~i~~~g~k~G-iai~p~T~~~~i~~~l~~-~D~vliM~V~PG~-----  145 (224)
                      ..-.+.+.++|+|.+++-..+.  ....+.++++|+.--.+- ++=|-.|. +....++.. +|.|.+ ++-||-     
T Consensus       230 ~eRa~~Lv~AGvDvivIDtAhGhs~~vi~~ik~ik~~~~~v~viaGNv~T~-~~a~~L~~aGaD~vkV-GiG~GsiCtTr  307 (486)
T PRK05567        230 EERAEALVKAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATA-EAARALIEAGADAVKV-GIGPGSICTTR  307 (486)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHH-HHHHHHHHCCCCEEEE-CCCCCCCCCCC
T ss_conf             999999997699889950445215778999999974078773687512019-9999999729876996-56688665134


Q ss_pred             ----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             ----6533220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r  146 ----GGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       146 ----~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                          -|-|    .+.-|.+..+...++++.|..||||+ .-.+.+...+|||.+-+||.+-+..+
T Consensus       308 ~v~GvGvP----q~tAv~~~a~~a~~~~v~iIADGGi~~sGdi~KAla~GAd~VMlGs~lAgt~E  368 (486)
T PRK05567        308 IVAGVGVP----QITAIADAAEAAKKTGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEE  368 (486)
T ss_pred             CCCCCCCC----HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHCCCCEEEECCHHCCCCC
T ss_conf             32477864----69999999999986597799648835435799998658988986612147767


No 136
>PRK08104 consensus
Probab=97.81  E-value=0.0035  Score=40.62  Aligned_cols=172  Identities=12%  Similarity=0.180  Sum_probs=116.2

Q ss_pred             EEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCC
Q ss_conf             1881706325889999999999965998999973426345843417899998641-256416856788512033676404
Q gi|254780975|r    5 IQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIAD   83 (224)
Q Consensus         5 ~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~   83 (224)
                      -+|.|=+-..|..+...-.+.|.++|+..+-+-.-       ..-..+.++.+++ +++..+-+  =+---...++...+
T Consensus        15 ~~iipVir~~~~~~a~~la~al~~gGi~~iEiTlr-------t~~a~~~I~~l~~~~p~~~vGa--GTV~~~e~~~~ai~   85 (212)
T PRK08104         15 GPVVPVIVINKLEHAVPLAKALVAGGVRVLEVTLR-------TPCALEAIRAIAKEVPEAIVGA--GTVLNPQQLAEVTE   85 (212)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC-------CCHHHHHHHHHHHHCCCCEEEE--EECCCHHHHHHHHH
T ss_conf             98689997799999999999999879988999688-------8149999999998689856854--20267999999998


Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECC-CCCCCCCCHHHHHHHH
Q ss_conf             7760799970664215899986776498--259985233344789988620140289983067-7653322013577899
Q gi|254780975|r   84 AGCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPG-FGGQQLIESTIPKIRQ  160 (224)
Q Consensus        84 ~g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG-~~Gq~f~~~~l~kI~~  160 (224)
                      +|++.+.-..=  +  .++++.+++++.  -+|+.    ||-|...-+-.-++.|-+   -|. -.|      -.+-++.
T Consensus        86 aGA~FiVSP~~--~--~~v~~~a~~~~i~~iPGv~----TpsEi~~A~~~G~~~vKl---FPA~~~g------G~~~lka  148 (212)
T PRK08104         86 AGAQFAISPGL--T--EELLKAATEGTIPLIPGIS----TVSELMLGMDYGLTEFKF---FPAEANG------GVKALQA  148 (212)
T ss_pred             CCCCEEECCCC--C--HHHHHHHHHCCCCEECCCC----CHHHHHHHHHCCCCEEEE---CCCCCCC------CHHHHHH
T ss_conf             59999984899--9--9999999982997656769----999999999879997997---8762137------4999999


Q ss_pred             HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             86543138652698158998899999967998999742663789
Q gi|254780975|r  161 AKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       161 l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      ++.-++  +++++.-|||+.+|+....++|.=..|.||.++..+
T Consensus       149 l~~p~p--~~~f~ptGGV~~~N~~~yl~~~~v~~vgGS~l~~~~  190 (212)
T PRK08104        149 ISGPFS--QIRFCPTGGITPANYRDYLALKSVLCIGGSWLVPAD  190 (212)
T ss_pred             HHCCCC--CCEEEECCCCCHHHHHHHHHCCCEEEEECHHHCCHH
T ss_conf             855589--981896489898899999807987999883538999


No 137
>PRK01659 consensus
Probab=97.80  E-value=0.00012  Score=50.05  Aligned_cols=38  Identities=34%  Similarity=0.531  Sum_probs=20.0

Q ss_pred             CCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf             652698158998-89999996799899974266378998
Q gi|254780975|r  169 SISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFNQKGE  206 (224)
Q Consensus       169 ~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~~~d~  206 (224)
                      .+++++-|||+. +.+..+.++|||.++.||+.+++++.
T Consensus        74 ~ipi~vGGGIrs~e~~~~~l~~GadkViigs~a~~n~~~  112 (252)
T PRK01659         74 FIPLTVGGGISSVKDMKRLLRAGADKVSINSAAVLRPEL  112 (252)
T ss_pred             CCCEEEECCEECHHHHHHHHHCCCCEEEECHHHHHCHHH
T ss_conf             974799633200688889874488559831777529153


No 138
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.80  E-value=0.00039  Score=46.74  Aligned_cols=106  Identities=15%  Similarity=0.341  Sum_probs=68.7

Q ss_pred             CCEEEE---ECCCCCCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             607999---70664215899986776498-25998523334478998862-01402899830677653322013577899
Q gi|254780975|r   86 CDIITF---HPESSPHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQ  160 (224)
Q Consensus        86 ~d~i~~---H~E~~~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~  160 (224)
                      .|.+-+   |......+.+.++.+|+... +.-|.+-.+ .++.+...++ .+|.||+         -.|.++.+.+   
T Consensus       163 sd~iLIkdNHi~~~g~i~~ai~~~r~~~~~~~~IeVEv~-~l~q~~~a~~~g~DiI~L---------Dnm~~~~~~~---  229 (285)
T PRK07428        163 DDAVMIKDNHIQAAGGIGEAITRIRQQIPYPLTIEVETE-TLEQVQEALEYGADIIML---------DNMPVDQMQQ---  229 (285)
T ss_pred             CCCEEEEHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEC-CHHHHHHHHHCCCCEEEE---------CCCCHHHHHH---
T ss_conf             750567774752028999999999974899826999969-899999999669999998---------7999999999---


Q ss_pred             HHHHHHC--CCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             8654313--8652698158998899999967998999742663789
Q gi|254780975|r  161 AKALIGK--RSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       161 l~~~~~~--~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      ..++..+  .++.+++-||||.+|+..+.+.|+|.++.|+-..+.+
T Consensus       230 ~v~~l~~~~~~v~iEaSGgIn~~ni~~yA~tGVD~Is~galt~~~~  275 (285)
T PRK07428        230 AVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISTSAPITRSP  275 (285)
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf             9999873089889999899999999999974999998383106997


No 139
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.79  E-value=0.0004  Score=46.66  Aligned_cols=105  Identities=20%  Similarity=0.400  Sum_probs=67.9

Q ss_pred             CEEEE---ECCCCCCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             07999---70664215899986776498-25998523334478998862-014028998306776533220135778998
Q gi|254780975|r   87 DIITF---HPESSPHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQA  161 (224)
Q Consensus        87 d~i~~---H~E~~~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l  161 (224)
                      |.|-+   |......+.+.++.+|+... ..-+.+-.+| ++.+...++ .+|.|++=         .|.+   +.+++.
T Consensus       152 d~iLikdNHi~~~g~~~~av~~~r~~~~~~~kIeVEv~t-l~ea~~a~~~g~D~I~LD---------n~~~---~~~~~~  218 (269)
T cd01568         152 DAVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVET-LEEAEEALEAGADIIMLD---------NMSP---EELKEA  218 (269)
T ss_pred             CEEEEEHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHCCCCEEEEC---------CCCH---HHHHHH
T ss_conf             428980506867389999999999868998439999498-999999997699999987---------9899---999999


Q ss_pred             HHHHHC-CCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             654313-8652698158998899999967998999742663789
Q gi|254780975|r  162 KALIGK-RSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       162 ~~~~~~-~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      .++++. .++.+++-||||.+|+..+.+.|+|.++.|+-..+.+
T Consensus       219 v~~~~~~~~v~ieaSGgI~~~ni~~ya~~GvD~Is~g~lt~s~~  262 (269)
T cd01568         219 VKLLKGLPRVLLEASGGITLENIRAYAETGVDVISTGALTHSAP  262 (269)
T ss_pred             HHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHCCCC
T ss_conf             99847799859999899999999999975999999084005997


No 140
>PRK08782 consensus
Probab=97.77  E-value=0.00078  Score=44.82  Aligned_cols=171  Identities=15%  Similarity=0.247  Sum_probs=113.7

Q ss_pred             EEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCC
Q ss_conf             1881706325889999999999965998999973426345843417899998641-256416856788512033676404
Q gi|254780975|r    5 IQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIAD   83 (224)
Q Consensus         5 ~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~   83 (224)
                      -+|.|=+-..|.....+..+.|.++|+..+-+-.-.       .-..+.++.+++ ++++.+-+-  +---...++...+
T Consensus        17 ~~iipVir~~~~~~a~~~~eal~~gGi~~iEiTlrt-------~~a~~~i~~l~~~~p~~~vGaG--TV~~~e~~~~a~~   87 (219)
T PRK08782         17 AGILPVVTVDTLDQARRVADALLEGGLPAIELTLRT-------PVAIEALAMLKRELPNIVIGAG--TVLSERQLRQSVD   87 (219)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC-------CHHHHHHHHHHHHCCCCEEEEE--EECCHHHHHHHHH
T ss_conf             897899975999999999999998799879996799-------3399999999986899479999--7058999999998


Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCC--CCCCCCCHHHHHHH
Q ss_conf             7760799970664215899986776498--2599852333447899886201402899830677--65332201357789
Q gi|254780975|r   84 AGCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPGF--GGQQLIESTIPKIR  159 (224)
Q Consensus        84 ~g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~--~Gq~f~~~~l~kI~  159 (224)
                      +|++.+.-..=  +  .++++++++.+.  -+|.    .||-|...-+-.-++.+-+   -|+-  +|       ...++
T Consensus        88 aGA~FiVSP~~--~--~~v~~~a~~~~i~~iPGv----~TpSEi~~A~~~G~~~vKl---FPA~~~Gg-------~~~lk  149 (219)
T PRK08782         88 AGADFLVTPGT--P--APLARLLADAPIPAVPGA----ATPTELLTLMGLGFRVCKL---FPATAVGG-------LQMLK  149 (219)
T ss_pred             CCCCEEECCCC--C--HHHHHHHHHCCCCEECCC----CCHHHHHHHHHCCCCEEEE---CCCHHCCC-------HHHHH
T ss_conf             49989987899--7--999999998199764785----9999999999879998997---77322084-------99999


Q ss_pred             HHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             986543138652698158998899999967998999742663789
Q gi|254780975|r  160 QAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       160 ~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      .++.-++  +++++.-||||.+|+.++.++|.-..|.||.++..+
T Consensus       150 al~~pfp--~~~f~pTGGV~~~N~~~yl~~~~v~~vgGS~l~~~~  192 (219)
T PRK08782        150 GLAGPLS--ELKLCPTGGISETNAAEFLSQPNVLCIGGSWMVPKD  192 (219)
T ss_pred             HHHCCCC--CCEEEECCCCCHHHHHHHHHCCCEEEEECHHHCCHH
T ss_conf             9847699--981876799898789999807993999882538999


No 141
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.77  E-value=0.0002  Score=48.63  Aligned_cols=76  Identities=22%  Similarity=0.444  Sum_probs=52.7

Q ss_pred             CCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHH
Q ss_conf             3447899886201402899830677653322013577899865431386526981589-988999999679989997426
Q gi|254780975|r  121 TPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSS  199 (224)
Q Consensus       121 T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsa  199 (224)
                      .|++..+.|.+.+|++.+.=.+.-..|++-+.+.+++|.+      +..++++++||| +.+.+..+.+.||+.+|.||+
T Consensus        31 dP~~~A~~~~~~a~~lhivDLd~a~~g~~~n~~~I~~i~~------~~~~piqvGGGIrs~e~i~~~l~~Ga~kViigt~  104 (228)
T PRK04128         31 DPVEIALRFSEYVDKIHVVDLDGAFEGKPKNLDVVKNIIE------ETGLKVQVGGGFRTYESIKDAYEIGVENVIIGTK  104 (228)
T ss_pred             CHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHH------HCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf             9999999999669989999880301498326999999986------5496289738607799999999689976981451


Q ss_pred             HHC
Q ss_conf             637
Q gi|254780975|r  200 FFN  202 (224)
Q Consensus       200 if~  202 (224)
                      .++
T Consensus       105 a~~  107 (228)
T PRK04128        105 AFD  107 (228)
T ss_pred             CCC
T ss_conf             258


No 142
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.76  E-value=0.0018  Score=42.44  Aligned_cols=170  Identities=15%  Similarity=0.234  Sum_probs=112.0

Q ss_pred             EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             881706325889999999999965998999973426345843417899998641-2564168567885120336764047
Q gi|254780975|r    6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      +|.|=+-..|..+..+-.+.|.++|+..+-+-.-.    |   -..+.++.+++ ++++.+=+=  +---...++...++
T Consensus        16 ~ii~Vlr~~~~~~a~~i~~al~~gGi~~iEiTl~t----p---~a~~~I~~l~~~~p~~~vGaG--TV~~~e~~~~a~~a   86 (212)
T PRK05718         16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRT----P---AALEAIRAIRKEVPEALIGAG--TVLNPEQLAQAIEA   86 (212)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC----C---HHHHHHHHHHHHCCCCEEEEE--EECCHHHHHHHHHC
T ss_conf             87999974899999999999998799789995789----6---199999999975898179653--31348899999984


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCCE--EEEEEECCCCHHHHHHHHHHCCEEEEEEEECC--CCCCCCCCHHHHHHHH
Q ss_conf             7607999706642158999867764982--59985233344789988620140289983067--7653322013577899
Q gi|254780975|r   85 GCDIITFHPESSPHIRRSLRTIHAMGKK--TGVAINPETPVAILEDVIDEIDMILIMTVNPG--FGGQQLIESTIPKIRQ  160 (224)
Q Consensus        85 g~d~i~~H~E~~~~~~~~i~~i~~~g~k--~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG--~~Gq~f~~~~l~kI~~  160 (224)
                      |++.+.-..=  +  .++++.++++|.-  +|+    .||-|...-+-.-++.|-+   -|.  .+|       .+.++.
T Consensus        87 GA~FiVSP~~--~--~~v~~~a~~~~i~~iPGv----~TpsEi~~A~~~G~~~vK~---FPA~~~gG-------~~~lka  148 (212)
T PRK05718         87 GAQFIVSPGL--T--PPLLKACQDGPIPLIPGV----NTPSELMLAMELGLRTFKF---FPAEASGG-------VKMLKA  148 (212)
T ss_pred             CCCEEECCCC--C--HHHHHHHHHCCCCEECCC----CCHHHHHHHHHCCCCEEEE---CCCCCCCC-------HHHHHH
T ss_conf             9989984899--8--999999998199765786----9999999999879998997---87610179-------999999


Q ss_pred             HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             86543138652698158998899999967998999742663789
Q gi|254780975|r  161 AKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       161 l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      ++.-++  +++++.=||||.+|+..+.+++.=..|.||.++..+
T Consensus       149 l~~p~p--~i~~~ptGGV~~~N~~~yl~~~~v~avgGS~l~~~~  190 (212)
T PRK05718        149 LAGPFS--DVRFCPTGGISPANYRDYLALPNVLCIGGSWMVPKD  190 (212)
T ss_pred             HHCCCC--CCEEEECCCCCHHHHHHHHCCCCEEEEECHHHCCHH
T ss_conf             856589--982886599898789999817886999873528999


No 143
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.75  E-value=0.00041  Score=46.57  Aligned_cols=117  Identities=20%  Similarity=0.315  Sum_probs=73.2

Q ss_pred             CHHHHHHCC-CC---------CCEEEE---ECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEE
Q ss_conf             033676404-77---------607999---7066421589998677649825998523334478998862-014028998
Q gi|254780975|r   75 DSHINIIAD-AG---------CDIITF---HPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMT  140 (224)
Q Consensus        75 ~~~i~~~~~-~g---------~d~i~~---H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~  140 (224)
                      .+++++++- +|         .|.|-+   |......+.+.++.+|+.....=+.+-.+ .++.+...+. .+|.||+  
T Consensus       148 lR~leKyAV~~GGG~nHR~gL~D~iLIKdNHi~~~g~i~~ai~~~r~~~~~~kIeVEv~-sl~q~~ea~~~gaDiImL--  224 (288)
T PRK07896        148 LRALQKYAVRCGGGVNHRMGLGDAALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVD-SLEQLDEVLAEGAELILL--  224 (288)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEE--
T ss_conf             57999999997793555688754289862146530869999999998589961999979-799999987469999997--


Q ss_pred             EECCCCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             3067765332201357789986543138--652698158998899999967998999742663789
Q gi|254780975|r  141 VNPGFGGQQLIESTIPKIRQAKALIGKR--SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       141 V~PG~~Gq~f~~~~l~kI~~l~~~~~~~--~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                             -.|.   .+-+++.-++...+  ++.+++-||||.+|+..+.+.|+|.+.+|+---+.+
T Consensus       225 -------DNms---~e~~~~av~~~~~~~~~v~lEaSGgI~~~ni~~yA~tGVD~IS~G~LThs~~  280 (288)
T PRK07896        225 -------DNFP---VWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAATGVDYLAVGALTHSVR  280 (288)
T ss_pred             -------CCCC---HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf             -------7999---9999999999837698748999889999999999965999998785326997


No 144
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.74  E-value=0.00043  Score=46.48  Aligned_cols=102  Identities=13%  Similarity=0.228  Sum_probs=64.0

Q ss_pred             ECCCCCCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             70664215899986776498-25998523334478998862-01402899830677653322013577899865431386
Q gi|254780975|r   92 HPESSPHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRS  169 (224)
Q Consensus        92 H~E~~~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~  169 (224)
                      |......+.+.++.+|+... ..-+.+-.+ .++.....+. .+|.|++=         .|.++.+.+.-.+++- ...+
T Consensus       160 Hi~~~g~~~~ai~~~r~~~~~~~kIeVEv~-~l~ea~~a~~~gaDiI~LD---------n~~~e~~k~~v~~~~~-~~~~  228 (272)
T PRK05848        160 HLKHIKDLKSFIQHARKNIPFTAKIEIECE-SLEEAKEAMNAGADIVMCD---------NMSVEETKEIVAYRNA-NYPH  228 (272)
T ss_pred             HHHHHCCHHHHHHHHHHHCCCCCEEEEECC-CHHHHHHHHHCCCCEEEEC---------CCCHHHHHHHHHHHHC-CCCC
T ss_conf             887726899999999985899846999749-9999999984599989958---------9999999999998746-4887


Q ss_pred             CEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             52698158998899999967998999742663789
Q gi|254780975|r  170 ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       170 ~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      +.|++-||||.+|+..+.+.|+|.+++|+..-+.+
T Consensus       229 v~ieaSGGI~~~ni~~yA~~GvD~Is~g~lth~a~  263 (272)
T PRK05848        229 VLLEASGNISLETINAYAKSGVDAISSGSLIHQAT  263 (272)
T ss_pred             EEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf             79999799989999999965999998797767993


No 145
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.73  E-value=0.00024  Score=48.08  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=24.7

Q ss_pred             EEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf             997342634584341789999864125641685678851203367640477607999
Q gi|254780975|r   35 HFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITF   91 (224)
Q Consensus        35 HiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~   91 (224)
                      -+|+.||..|...-                ++-|..+.+|...+..|.+.|+|.+.+
T Consensus         6 aIdl~~g~~Vk~~~----------------~~~~~~~gdP~~~a~~~~~~gadelhi   46 (243)
T cd04731           6 CLDVKDGRVVKGVN----------------FKNLRDAGDPVELAKRYNEQGADELVF   46 (243)
T ss_pred             EEEEECCEEEECCC----------------CCCEEECCCHHHHHHHHHHCCCCEEEE
T ss_conf             99999999994635----------------755068889999999999869999999


No 146
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=97.73  E-value=0.0048  Score=39.78  Aligned_cols=167  Identities=20%  Similarity=0.259  Sum_probs=98.4

Q ss_pred             HHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEC--------------CHHHHHHCCCCCC
Q ss_conf             99999965998999973426345843417899998641256416856788512--------------0336764047760
Q gi|254780975|r   22 EISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSI--------------DSHINIIADAGCD   87 (224)
Q Consensus        22 ~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P--------------~~~i~~~~~~g~d   87 (224)
                      ......++|+|.+.+  ++.-.+-.+|=++..++..++..+  +.+|.|+-.-              .+-+..+.+.|++
T Consensus        12 ~a~~A~~~GAdRIEL--Cs~L~~GGlTPs~~~i~~~~~~~~--ipv~vMIRPR~G~F~Ys~~E~~~M~~dI~~~~~~G~~   87 (202)
T pfam03932        12 SLLAAQAGGADRVEL--CANLAVGGLTPSYGVIKSAAQRAK--IPVYVMIRPRGGDFVYSDHELKAMLEDILKAVELGAP   87 (202)
T ss_pred             HHHHHHHCCCCEEEE--CCCCCCCCCCCCHHHHHHHHHHCC--CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999849999986--267666897989999999998659--9749998427998864989999999999999986989


Q ss_pred             EEEEECCCCC---C---HHHHHHHHHHCCCEEEEEEECC-CCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             7999706642---1---5899986776498259985233-34478998862-0140289983067765332201357789
Q gi|254780975|r   88 IITFHPESSP---H---IRRSLRTIHAMGKKTGVAINPE-TPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIR  159 (224)
Q Consensus        88 ~i~~H~E~~~---~---~~~~i~~i~~~g~k~Giai~p~-T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~  159 (224)
                      -+.|=+=+.+   |   +.+.++..+...+-+-=|+.-. .+.+.++.+++ -+++||  |    -+|+.-...-++.++
T Consensus        88 GvV~G~L~~d~~iD~~~~~~li~~a~~l~~TFHRAfD~~~d~~~al~~L~~lG~~rIL--T----SGg~~~a~~g~~~L~  161 (202)
T pfam03932        88 GVVLGALTADGEIDTKRMEKLIEAAGGLGVTFHRAFDMCPDPEEALEQLIELGCERVL--T----SGGPLSALEGLEKLA  161 (202)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECHHHCCCCHHHHHHHHHHCCCCEEE--C----CCCCCCHHHHHHHHH
T ss_conf             7899888899982999999999974688559862043059999999999975998787--5----799787667499999


Q ss_pred             HHHHHHHCCCCEEEEECCCCHHHHHHHHH-CCCCEEEECHHH
Q ss_conf             98654313865269815899889999996-799899974266
Q gi|254780975|r  160 QAKALIGKRSISLEVDGGVTSRNIKSLVQ-AGADLLVVGSSF  200 (224)
Q Consensus       160 ~l~~~~~~~~~~I~vDGGvn~~~i~~l~~-~Gad~~V~Gsai  200 (224)
                      ++.+..+. .+.|..-||||.+|++.+.+ .|++-+ =||+|
T Consensus       162 ~l~~~a~~-~i~Im~GgGI~~~N~~~l~~~~g~~~~-H~sai  201 (202)
T pfam03932       162 SLVAQAGG-RISIMAGAGVNAENIAELRQLTGVAEV-HGSAI  201 (202)
T ss_pred             HHHHHCCC-CEEEEECCCCCHHHHHHHHHHHCCCEE-EEECC
T ss_conf             99996599-849995799899999999997199488-56246


No 147
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=97.72  E-value=0.005  Score=39.68  Aligned_cols=201  Identities=11%  Similarity=0.143  Sum_probs=136.9

Q ss_pred             CCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHC
Q ss_conf             98188170632588999999999996599899997342634584341789999864125641685678851203367640
Q gi|254780975|r    3 PSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIA   82 (224)
Q Consensus         3 k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~   82 (224)
                      +-+|+...|.+.|......-.+..+.+|++|+-  |.         -.|+.++..++.+++|+=|-  .-+|+.+. ...
T Consensus        13 ~alKVIsGL~NFd~~~V~~i~~AA~~ggAt~vD--IA---------~dp~LV~~v~~~~~lPiCVS--aVep~~f~-~aV   78 (243)
T pfam04481        13 KAIKVISGLNNFNYEQVLKIARASQIAKATYVD--IA---------ADPQLVKVVKSVSNIPICVS--AVEPELLY-EAV   78 (243)
T ss_pred             CHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEE--EC---------CCHHHHHHHHHHCCCCEEEE--CCCHHHHH-HHH
T ss_conf             407764072326989999999998715997687--41---------79999999997289985860--47978889-999


Q ss_pred             CCCCCEEEEE-CCC----C--CCHHHHHHHHHHCC---CEEEEEE-ECCC-CHHHHHHHHHH-----CCEEEEEEEECCC
Q ss_conf             4776079997-066----4--21589998677649---8259985-2333-44789988620-----1402899830677
Q gi|254780975|r   83 DAGCDIITFH-PES----S--PHIRRSLRTIHAMG---KKTGVAI-NPET-PVAILEDVIDE-----IDMILIMTVNPGF  145 (224)
Q Consensus        83 ~~g~d~i~~H-~E~----~--~~~~~~i~~i~~~g---~k~Giai-~p~T-~~~~i~~~l~~-----~D~vliM~V~PG~  145 (224)
                      ++|+|+|-+- +++    .  -..++++...|+..   -.+-|.. -|.+ |++.=..+..+     +|.++-   +-|.
T Consensus        79 ~AGA~lvEIGNfDsFY~qGr~f~a~eVL~Lt~~Tr~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQT---EGgt  155 (243)
T pfam04481        79 LAGADLVEIGNFDSFYKQGRVLSVCEIIALVKETRKLLPHTPLCVTIPHILKLKEQINLAKQLESLGIDLIQT---EGKI  155 (243)
T ss_pred             HHCCCEEEECCHHHHHHCCCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEC---CCCC
T ss_conf             8278789864536476547664499999999999976899844774576356789999999999818877872---8987


Q ss_pred             CCCCCCCHHHHHHHHHHH-------HHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             653322013577899865-------4313865269815899889999996799899974266378998999999999999
Q gi|254780975|r  146 GGQQLIESTIPKIRQAKA-------LIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       146 ~Gq~f~~~~l~kI~~l~~-------~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
                      +-+++.+.++..|++.--       +-..-++++.---|++.-|.|-...+||--+=+||++=+-.|..+....+++|++
T Consensus       156 ss~p~~~g~~glIekaapTLAaay~IS~~v~vPVlcASGlS~vT~PmAiaaGAsGVGVGSavn~Lnd~~aMva~vr~l~~  235 (243)
T pfam04481       156 TSISKNHCVNDLIEKSASTLASTYEISKHVQLPVICASGLSDVTVPLAFSYGASGIGIGSAVSKLNDIEKMVNYISEIKK  235 (243)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             77888842577798875889999999861787667546764214788997487710065776500249999999999999


Q ss_pred             HH
Q ss_conf             78
Q gi|254780975|r  219 SA  220 (224)
Q Consensus       219 ~a  220 (224)
                      +-
T Consensus       236 al  237 (243)
T pfam04481       236 AI  237 (243)
T ss_pred             HH
T ss_conf             97


No 148
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=97.69  E-value=0.00048  Score=46.15  Aligned_cols=95  Identities=21%  Similarity=0.420  Sum_probs=60.1

Q ss_pred             CCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC--CCCEE
Q ss_conf             215899986776498-25998523334478998862-014028998306776533220135778998654313--86526
Q gi|254780975|r   97 PHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK--RSISL  172 (224)
Q Consensus        97 ~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~--~~~~I  172 (224)
                      .++.+.++.+++..- ..-+.+-.+| ++.+...+. .+|.||+         -.|   ..+.+++..+++.+  ..+.+
T Consensus        64 g~~~~~i~~~~~~~~~~~~I~VEv~t-l~e~~~a~~~~~d~I~L---------Dn~---spe~l~~~v~~l~~~~~~v~i  130 (169)
T pfam01729        64 GSITEAVRRAREVAPFAVKIEVEVEN-LEELEEALEAGADIIML---------DNF---SPEEVREAVEELDERAGRVLL  130 (169)
T ss_pred             CCHHHHHHHHHHHCCCCCEEEEEEEH-HHHHHHHHHCCCCEEEE---------CCC---CHHHHHHHHHHHHHHCCCEEE
T ss_conf             79999999999967999709999601-99899998469989997---------799---999999999999975896799


Q ss_pred             EEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             98158998899999967998999742663789
Q gi|254780975|r  173 EVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       173 ~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      ++-||||.+|+..+.+.|+|.+.+|+...+.+
T Consensus       131 EaSGgI~~~ni~~yA~tGvD~IS~galt~sa~  162 (169)
T pfam01729       131 EVSGGITLDNVLEYAKTGVDVISVGALTHSVP  162 (169)
T ss_pred             EECCCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf             96189999999999976999998586446997


No 149
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain.  DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.66  E-value=0.00034  Score=47.15  Aligned_cols=144  Identities=15%  Similarity=0.197  Sum_probs=93.3

Q ss_pred             CCCCEEEEEEEEEECCHH---HHHHCCCCCCEEEEECCC------------CCCHHHHHHHHHHCCCE-EEEEEECCCCH
Q ss_conf             256416856788512033---676404776079997066------------42158999867764982-59985233344
Q gi|254780975|r   60 YSDSVFDCHLMISSIDSH---INIIADAGCDIITFHPES------------SPHIRRSLRTIHAMGKK-TGVAINPETPV  123 (224)
Q Consensus        60 ~t~~~~dvHLMv~~P~~~---i~~~~~~g~d~i~~H~E~------------~~~~~~~i~~i~~~g~k-~Giai~p~T~~  123 (224)
                      .++.|+=+-++...++.|   .+++.++|+|.+-+-.-+            -+.+.++++++++.-.+ +-+=|.|+++.
T Consensus        96 ~~~~pli~Si~~~~~~~~~~~a~~~~~~gad~lElNiScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKLsp~~~~  175 (289)
T cd02810          96 FPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDL  175 (289)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf             79953999788898789999999999847984899840367565532014999999999999860268748842788761


Q ss_pred             HHHHHHHHH-----CCEEEEE-E-----------------EECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-
Q ss_conf             789988620-----1402899-8-----------------306776533220135778998654313865269815899-
Q gi|254780975|r  124 AILEDVIDE-----IDMILIM-T-----------------VNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-  179 (224)
Q Consensus       124 ~~i~~~l~~-----~D~vliM-~-----------------V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-  179 (224)
                      +.+..++..     +|.|.+- |                 ..=|.+|.+..+.++..|+++++..+ .++.|.-=|||. 
T Consensus       176 ~~~~~ia~~~~~~ga~gv~~~Nt~~~~~~~~~~~~~~~~~~~gGlSG~~i~~~al~~v~~~~~~~~-~~i~Iig~GGI~~  254 (289)
T cd02810         176 EDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ-LDIPIIGVGGIDS  254 (289)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCC
T ss_conf             689999999997599689996787765554444554456776523662778899999999999749-9960999899399


Q ss_pred             HHHHHHHHHCCCCEEEECHHHHCC-C
Q ss_conf             889999996799899974266378-9
Q gi|254780975|r  180 SRNIKSLVQAGADLLVVGSSFFNQ-K  204 (224)
Q Consensus       180 ~~~i~~l~~~Gad~~V~Gsaif~~-~  204 (224)
                      .+.+.+...+||+.+=++|+++.. +
T Consensus       255 ~~da~e~i~aGA~~Vqv~Tal~~~Gp  280 (289)
T cd02810         255 GEDVLEMLMAGASAVQVATALMWDGP  280 (289)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHCH
T ss_conf             99999999849979999899997586


No 150
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=97.66  E-value=0.006  Score=39.15  Aligned_cols=158  Identities=15%  Similarity=0.158  Sum_probs=103.1

Q ss_pred             HHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCC-EEEEEEEEEECCHHHHHHC-CCCCCEEEEECCCCC
Q ss_conf             999999965998999973426345843417899998641-2564-1685678851203367640-477607999706642
Q gi|254780975|r   21 EEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDS-VFDCHLMISSIDSHINIIA-DAGCDIITFHPESSP   97 (224)
Q Consensus        21 ~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~-~~dvHLMv~~P~~~i~~~~-~~g~d~i~~H~E~~~   97 (224)
                      +.+..+.+.|+||+=+=+-...  |- -.+++....+.+ .... +--|=+-|+.....+.... ..+.|++=+|=+.+.
T Consensus        16 eda~~a~~lGaD~iGFIFy~kS--PR-yV~~e~a~~L~~~l~k~g~k~VGVFVN~~~e~I~~i~~~~~LDiVQLHGdEs~   92 (611)
T PRK13803         16 ALASEAVQMGADFIGIITYSKS--KR-YVNNKMAANLAKAIRKAGGRPVAVFVDFSAKALESFCKSTGIDVVQLHGAISK   92 (611)
T ss_pred             HHHHHHHHCCCCEEEEECCCCC--CC-CCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCH
T ss_conf             9999999779698978505899--87-58878899999753415897699996999899999998569997985898886


Q ss_pred             C----HHHHHHHHHHCCCEEEEEEEC--CCCHHHHHHHHHHCCEEEEEEE--ECCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             1----589998677649825998523--3344789988620140289983--0677653322013577899865431386
Q gi|254780975|r   98 H----IRRSLRTIHAMGKKTGVAINP--ETPVAILEDVIDEIDMILIMTV--NPGFGGQQLIESTIPKIRQAKALIGKRS  169 (224)
Q Consensus        98 ~----~~~~i~~i~~~g~k~Giai~p--~T~~~~i~~~l~~~D~vliM~V--~PG~~Gq~f~~~~l~kI~~l~~~~~~~~  169 (224)
                      .    +....+.++..++++.=++.-  ..+++.+..|.+.+|++|+=+-  .+|-+|+.|+=+.+..      .  ..+
T Consensus        93 ~~~~~lp~~c~~~~~~~i~ViKai~i~~~~DLe~l~~Y~~~~d~lLfD~~~~~~GGTGktFDW~lL~~------~--~~~  164 (611)
T PRK13803         93 AEHHLLPASLQRIYVLSVNKNGSILKDNAGGLEHLDEKRDTFGFLLFDNEAVLIGGSGQSYDLNQRFN------Y--TGK  164 (611)
T ss_pred             HHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHH------C--CCC
T ss_conf             77866588878888716416776520777669998754420478986589999997986358787861------7--899


Q ss_pred             CEEEEECCCCHHHHHHHHHC
Q ss_conf             52698158998899999967
Q gi|254780975|r  170 ISLEVDGGVTSRNIKSLVQA  189 (224)
Q Consensus       170 ~~I~vDGGvn~~~i~~l~~~  189 (224)
                      .+...-||+|.+|+.++.+.
T Consensus       165 ~Pf~LAGGLnpdNV~eAi~~  184 (611)
T PRK13803        165 FRYFLSGGLSPTNVDRAIQL  184 (611)
T ss_pred             CCEEEECCCCHHHHHHHHHC
T ss_conf             99899748976879999972


No 151
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.66  E-value=0.00066  Score=45.30  Aligned_cols=104  Identities=19%  Similarity=0.398  Sum_probs=67.1

Q ss_pred             CEEEE---ECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf             07999---7066421589998677649825998523334478998862-0140289983067765332201357789986
Q gi|254780975|r   87 DIITF---HPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAK  162 (224)
Q Consensus        87 d~i~~---H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~  162 (224)
                      |.+-+   |......+.+.++..++.....-+.+-.+|. +.+...+. .+|.||+         -.|   ..+.+++.-
T Consensus       161 d~iLiKdNHi~~~g~i~~~v~~~~~~~~~~kIeVEv~tl-~q~~~a~~~gaDiI~L---------Dnm---s~~~lk~av  227 (277)
T PRK05742        161 DAFLIKENHIAACGGIAQAVAAAHRIAPGKPVEVEVESL-DELRQALAAGADIVML---------DEL---SLDDMREAV  227 (277)
T ss_pred             CEEEEECCHHHHCCCHHHHHHHHHHHCCCCCEEEEECCH-HHHHHHHHCCCCEEEE---------CCC---CHHHHHHHH
T ss_conf             358974546555067999999999848997269996779-9999987469989998---------699---999999999


Q ss_pred             HHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             543138652698158998899999967998999742663789
Q gi|254780975|r  163 ALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       163 ~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      ++.. .++.+++-||||.+|+.++.+.|+|.+++|+-.-+.+
T Consensus       228 ~~~~-~~~~iEaSGGI~~~ni~~yA~tGvD~IS~galt~~a~  268 (277)
T PRK05742        228 RLTA-GRAKLEASGGINETTLRVIAETGVDYISIGAMTKDVK  268 (277)
T ss_pred             HHHC-CCEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf             9747-9748999889999999999974999998880106996


No 152
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.65  E-value=0.0063  Score=39.04  Aligned_cols=125  Identities=20%  Similarity=0.257  Sum_probs=82.2

Q ss_pred             CHHHHHHCCCCCCEEEEECCCC--CCHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCC-----
Q ss_conf             0336764047760799970664--2158999867764982-5998523334478998862-01402899830677-----
Q gi|254780975|r   75 DSHINIIADAGCDIITFHPESS--PHIRRSLRTIHAMGKK-TGVAINPETPVAILEDVID-EIDMILIMTVNPGF-----  145 (224)
Q Consensus        75 ~~~i~~~~~~g~d~i~~H~E~~--~~~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~-----  145 (224)
                      ..-.+.+.++|+|.+++-.-+-  ....+.+++||+..-. .-+|=|-.|. +-...+++ -+|.|.+ ++-||-     
T Consensus       240 ~eRa~~Lv~aGvDvlvIDtAhGhs~~v~~~ik~ik~~~p~v~vIaGNVaT~-~~a~~Li~aGAD~vkV-GiGpGSiCTTR  317 (499)
T PTZ00314        240 KERAAALIDAGVDVLVLDSSQGNSIYQIDFIKWIKSTYPHLEVIAGNVVTQ-DQAKNLIDAGADGIRI-GMGSGSICTTQ  317 (499)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECHH-HHHHHHHHCCCCEEEE-CCCCCCCCCCC
T ss_conf             999999998699899981688772789999999885279884676433109-9999999749987997-53588551046


Q ss_pred             ----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             ----6533220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r  146 ----GGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       146 ----~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                          -|-|    .+.-|.+..+...++++.|+.||||+ ...+.+.+.+|||.+-.||.+-+.+.
T Consensus       318 ~v~GvGvP----q~tAv~~~a~~a~~~gvpiIADGGIr~sGDi~KAlAaGAd~VMlGsllAGt~E  378 (499)
T PTZ00314        318 EVCAVGRP----QATAVYKVARYAHSRGVPCIADGGIRSSGDIVKALALGASCVMLGSMLAGTEE  378 (499)
T ss_pred             CCCCCCCC----HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf             43466786----05679999998644998599147846431899998728987860841047677


No 153
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=97.64  E-value=0.0062  Score=39.07  Aligned_cols=195  Identities=15%  Similarity=0.253  Sum_probs=129.5

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEE-CCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEEC
Q ss_conf             8899999999999659989999734-263458434178999986412564168567885120336764047760799970
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVM-DGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHP   93 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDIm-Dg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~   93 (224)
                      ++=++.+....+.++|+|.|-+-.= |..     -.-++.+..|++..+.++.+-  ...-..+++...+..++.+|+=+
T Consensus        22 ~~Pd~~~~a~~~~~~Ga~gITvH~R~DrR-----HI~~~Dv~~l~~~~~~~lNiE--~apt~e~i~ia~~~kP~qvtLVP   94 (240)
T PRK05265         22 NYPDPVRAALIAEEAGADGITVHLREDRR-----HIRDRDVRRLRETLKTRLNLE--MAATEEMLDIALEIKPHQVTLVP   94 (240)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEECCCCCCC-----CCCCHHHHHHHHHCCCCEEEE--CCCCHHHHHHHHHCCCCEEEECC
T ss_conf             99999999999998399858952688634-----466256999998648636871--18818899999984998599888


Q ss_pred             CCC---------------CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEE-CCCCCCCCCCHHHH
Q ss_conf             664---------------21589998677649825998523334478998862-01402899830-67765332201357
Q gi|254780975|r   94 ESS---------------PHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVN-PGFGGQQLIESTIP  156 (224)
Q Consensus        94 E~~---------------~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~-PG~~Gq~f~~~~l~  156 (224)
                      |.-               +.+..+++.+++.|+++.+=+.|+.  +.++.-.. -+|.|=+-|-. .-..+++-....++
T Consensus        95 e~r~e~TTegGld~~~~~~~L~~~i~~lk~~gIrvSLFiDPd~--~~i~~a~~~Gad~VElhTG~Ya~a~~~~~~~~el~  172 (240)
T PRK05265         95 EKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPDP--EQIEAAAEVGADRIELHTGPYADAKTEAEQAAELE  172 (240)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHHHCCCEEEEECHHHHHHCCCCHHHHHHH
T ss_conf             9988626788937765789999999999865981799727987--89999998493999983478786357521999999


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCC-CCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             7899865431386526981589988999999679-9899974266378998999999999999
Q gi|254780975|r  157 KIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAG-ADLLVVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       157 kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~G-ad~~V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
                      |+++..++-.+.++.+-.--|+|.+|++.+.+.. .+-+-.|-+|....-.....+.++++++
T Consensus       173 ~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~ip~i~EvsIGHaiI~eAl~~Gl~~aV~~~~~  235 (240)
T PRK05265        173 RIAEAAALAASLGLGVNAGHGLNYHNVKPIAAIPGIEELNIGHAIIARALFVGLEEAVREMKA  235 (240)
T ss_pred             HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999986987853789887778998448997488457999999999749999999999


No 154
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.63  E-value=0.00032  Score=47.31  Aligned_cols=48  Identities=17%  Similarity=0.088  Sum_probs=21.4

Q ss_pred             EEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf             9734263458434178999986412564168567885120336764047760799
Q gi|254780975|r   36 FDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIIT   90 (224)
Q Consensus        36 iDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~   90 (224)
                      +|++||.-|.-.....+.      ++.. ..-|....+|..++..|.+.|++.+.
T Consensus         6 iDi~~g~vVr~~~G~~~~------y~~~-~~~~~~~~dP~~~a~~~~~~ga~~lh   53 (233)
T cd04723           6 IDLKDGVVVHGVGGDRDN------YRPI-TSNLCSTSDPLDVARAYKELGFRGLY   53 (233)
T ss_pred             EEEECCEEEEEECCCCCC------CCCC-CCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             996699699845667654------5444-43730587999999999987989899


No 155
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.62  E-value=0.00081  Score=44.73  Aligned_cols=104  Identities=21%  Similarity=0.338  Sum_probs=67.9

Q ss_pred             CEEEE---ECCCCCCHHHHHHHHHHC-CCEEEEEEECCCCHHHHHH-HHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             07999---706642158999867764-9825998523334478998-862014028998306776533220135778998
Q gi|254780975|r   87 DIITF---HPESSPHIRRSLRTIHAM-GKKTGVAINPETPVAILED-VIDEIDMILIMTVNPGFGGQQLIESTIPKIRQA  161 (224)
Q Consensus        87 d~i~~---H~E~~~~~~~~i~~i~~~-g~k~Giai~p~T~~~~i~~-~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l  161 (224)
                      |.|-+   |......+.+.++.+|+. +...=|.+-.+| ++.+.. +-..+|.||+         -.|.|+.   +++.
T Consensus       159 d~iLIKdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~s-~~q~~~a~~~g~diImL---------DNm~p~~---ik~~  225 (277)
T PRK08072        159 DGVMIKDNHIAFAGSITKAVTSVREKLGHMVKIEVETET-EEQVREAVAAGADIIMF---------DNRTPDE---IREF  225 (277)
T ss_pred             CEEEEEHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHCCCCEEEE---------CCCCHHH---HHHH
T ss_conf             407864779862078999999999865998559997198-99999998679989998---------7989999---9999


Q ss_pred             HHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             6543138652698158998899999967998999742663789
Q gi|254780975|r  162 KALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       162 ~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      .++.+ .++.+++-||||.+|+.++.+.|+|.+++|+-..+.+
T Consensus       226 v~~~~-~~~~~EaSGgI~~~ni~~yA~tGVD~IS~g~lths~~  267 (277)
T PRK08072        226 VKLVP-SAIVTEASGGITLENLPKYGGTGVDYISLGFLTHSVK  267 (277)
T ss_pred             HHHHC-CCEEEEEECCCCHHHHHHHHHCCCCEEECCHHCCCCC
T ss_conf             99616-9649999889989999999964999998681006997


No 156
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.62  E-value=0.00079  Score=44.77  Aligned_cols=106  Identities=9%  Similarity=0.280  Sum_probs=63.2

Q ss_pred             CCEEEEECCC------CCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             6079997066------4215899986776498259985233344789988620140289983067765332201357789
Q gi|254780975|r   86 CDIITFHPES------SPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIR  159 (224)
Q Consensus        86 ~d~i~~H~E~------~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~  159 (224)
                      .|.+-+--++      ..++.+.++.+|+.....-|.+-.+|--+..+-+-..+|.||+         -.|.|+.+   +
T Consensus       157 sD~vLIKdNH~~~~~~~~~~~~ai~~~r~~~p~~kIeVEv~tl~~~~ea~~~gaD~IlL---------Dnmsp~~l---~  224 (284)
T PRK06096        157 AETILLFANHRHFLHDNQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQL---------DKFSPQQA---T  224 (284)
T ss_pred             CCEEEEECCHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEE---------CCCCHHHH---H
T ss_conf             63588700249887253579999999997589998899809999999998579999996---------89899999---9


Q ss_pred             HHHHHHHC--CCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             98654313--8652698158998899999967998999742663789
Q gi|254780975|r  160 QAKALIGK--RSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       160 ~l~~~~~~--~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      +.-++...  .++.+++-||||.+|++.+.+.|+|++|.|. ++.++
T Consensus       225 ~av~~~~~~~~~~~lEaSGGI~~~ni~~yA~tGVD~i~tsa-~~~a~  270 (284)
T PRK06096        225 EIAQIAPSLAPHCTLALTGGINLTTLKNYLDCGIRLFITSA-PYYAA  270 (284)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEECC-CCCCC
T ss_conf             99999872179779999899999999999980999998282-10678


No 157
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.57  E-value=0.0013  Score=43.44  Aligned_cols=94  Identities=15%  Similarity=0.293  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC----CCCEE
Q ss_conf             1589998677649825998523334478998862-014028998306776533220135778998654313----86526
Q gi|254780975|r   98 HIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK----RSISL  172 (224)
Q Consensus        98 ~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~----~~~~I  172 (224)
                      .+.+.++.+|+.....=+.+-.+ .++.....+. .+|.|++=         .|.++.+.+   ..++.++    .++.+
T Consensus       169 ~~~~av~~~r~~~~~~~IeVEv~-~lee~~~a~~~g~d~I~LD---------n~s~e~~~~---~v~~l~~~~~~~~v~i  235 (279)
T PRK08385        169 PLEEAIRRAKEFSVYKVVEVEVE-SLEDALKAAKAGADIIMLD---------NMTPEEIRE---VIEALKELGLREKVKI  235 (279)
T ss_pred             CHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEC---------CCCHHHHHH---HHHHHHHHCCCCCEEE
T ss_conf             88999999998489961899709-8999999997699999984---------999999999---9999875076897899


Q ss_pred             EEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             98158998899999967998999742663789
Q gi|254780975|r  173 EVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       173 ~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      ++-||||.+|+.++.+.|+|.+.+|+...+.+
T Consensus       236 eaSGGI~~~ni~~ya~tGVD~IS~g~lt~s~~  267 (279)
T PRK08385        236 EVSGGITPETIAEYAKLDVDVISLGALTHSVR  267 (279)
T ss_pred             EEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf             99789989999999855989998497776996


No 158
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.56  E-value=0.0031  Score=41.00  Aligned_cols=129  Identities=21%  Similarity=0.274  Sum_probs=86.2

Q ss_pred             CHHHHHHCCCCCCEEEEECCC--CCCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCC--CC
Q ss_conf             033676404776079997066--4215899986776498-25998523334478998862-014028998306776--53
Q gi|254780975|r   75 DSHINIIADAGCDIITFHPES--SPHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMTVNPGFG--GQ  148 (224)
Q Consensus        75 ~~~i~~~~~~g~d~i~~H~E~--~~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~--Gq  148 (224)
                      .+.++.+.++|+|.+++-...  .....++++++|+..- .+-+|=|-.|+ +..+.++. -+|.|.+ ++-||-.  -+
T Consensus        96 ~~r~~~l~~ag~d~i~IDvAhG~~~~~~~~ik~ir~~~p~~~IiaGNV~T~-e~a~~L~~~GaD~vkV-GiG~GS~CtTr  173 (325)
T cd00381          96 KERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTA-EAARDLIDAGADGVKV-GIGPGSICTTR  173 (325)
T ss_pred             HHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCEEECCCCCH-HHHHHHHHCCCCEEEE-CCCCCCCCCCC
T ss_conf             999999997699899987000345889999999997689975686456689-9999998669989997-57577776660


Q ss_pred             ---CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             ---3220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r  149 ---QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       149 ---~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                         .+--..+.-|.+..+...+++..|..||||+ ...+.+...+|||.+-+||.+-+..+
T Consensus       174 ~~tGvG~Pq~sai~~~a~~~~~~~v~iiaDGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~E  234 (325)
T cd00381         174 IVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDE  234 (325)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCHHCCCCC
T ss_conf             1017887458899999997634498589448733107888887528878984621046666


No 159
>pfam03740 PdxJ Pyridoxal phosphate biosynthesis protein PdxJ. Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate.
Probab=97.56  E-value=0.0058  Score=39.24  Aligned_cols=193  Identities=17%  Similarity=0.243  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCC-CCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCC
Q ss_conf             9999999999965998999973426345843-417899998641256416856788512033676404776079997066
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNI-SFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPES   95 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~-~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~   95 (224)
                      =++.+....+.++|+|.+-+-.=     |.- -+-.+.+..|++..+.++.+-  ...-..+++...+..++.+|+=+|.
T Consensus        22 Pd~~~aa~~~~~~GadgITvHlR-----eDrRHI~d~Dv~~l~~~~~~~lNlE--~~~~~emi~ia~~~kP~qvtLVPE~   94 (239)
T pfam03740        22 PDPVEAALIAERAGADGITVHLR-----EDRRHIQDRDVEVLKELIRTRFNIE--MAPTEEMLELALKTKPHQVTLVPEK   94 (239)
T ss_pred             CCHHHHHHHHHHCCCCEEEECCC-----CCCCCCCHHHHHHHHHHCCCCEEEC--CCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf             89999999999839986895258-----8765452378999999728746775--6874999999998499858988899


Q ss_pred             C---------------CCHHHHHHHHHHCCCEEEEEEECCCC-HHHHHHHHHHCCEEEEEEEE-CC-C-CCCCCCCHHHH
Q ss_conf             4---------------21589998677649825998523334-47899886201402899830-67-7-65332201357
Q gi|254780975|r   96 S---------------PHIRRSLRTIHAMGKKTGVAINPETP-VAILEDVIDEIDMILIMTVN-PG-F-GGQQLIESTIP  156 (224)
Q Consensus        96 ~---------------~~~~~~i~~i~~~g~k~Giai~p~T~-~~~i~~~l~~~D~vliM~V~-PG-~-~Gq~f~~~~l~  156 (224)
                      -               ..+..+++.+++.|+++.+-+.|+.. ++....+  -+|.|=+-|-. .- + .++...+..++
T Consensus        95 r~elTTegGld~~~~~~~L~~~i~~lk~~girvSlFIDpd~~~i~~a~~~--Gad~VElhTG~YA~a~~~~~~~~~~~l~  172 (239)
T pfam03740        95 REEITTEGGLDVVAQLEKLKPAIRRLKNAGIRVSLFIDPDPEQIEAAKIV--GADRIELHTGPYADAHNDAEQAREELLE  172 (239)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHC--CCCEEEEECHHHHHHHHCCHHHHHHHHH
T ss_conf             98735688806334068999999998607853899707998999999980--9299985047788775131555799999


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHC-CCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             789986543138652698158998899999967-99899974266378998999999999999
Q gi|254780975|r  157 KIRQAKALIGKRSISLEVDGGVTSRNIKSLVQA-GADLLVVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       157 kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~-Gad~~V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
                      ++++..++-.+.++.+-.-.|.|.+|++.+.+. +.+-+-.|-+|....-.....+.++++++
T Consensus       173 ~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~l~~i~~i~EvnIGHaiI~~al~~Gl~~aV~~~~~  235 (239)
T pfam03740       173 RLAAGAALAFDLGLVVNAGHGLTYHNVKPVAKIPPIAELNIGHSLVAEALFVGLAKAVLEMKA  235 (239)
T ss_pred             HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999874985746789887669998528997488556999999999749999999999


No 160
>TIGR01334 modD modD protein; InterPro: IPR006242   The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). Their function is unknown. ; GO: 0016763 transferase activity transferring pentosyl groups.
Probab=97.56  E-value=0.00067  Score=45.24  Aligned_cols=99  Identities=13%  Similarity=0.359  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             21589998677649825998523334478998862014028998306776533220135778998654313865269815
Q gi|254780975|r   97 PHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDG  176 (224)
Q Consensus        97 ~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG  176 (224)
                      .|+...+..+|..--+-=|++-.+|+.+.+.-+--.-|.+++         .+|-|+-+..+.++-++.+ +++.+.+-|
T Consensus       173 ~Dw~gai~rLkq~APE~KItvEadt~~qa~~~l~a~PDilQL---------dKFtpqQ~~~~~~~l~~~~-~~~tLa~aG  242 (277)
T TIGR01334       173 EDWSGAITRLKQQAPEKKITVEADTLKQALAVLRADPDILQL---------DKFTPQQVKELLELLKLLD-KIITLAVAG  242 (277)
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEC---------CCCCHHHHHHHHHHHHHHC-CCCCEEEEC
T ss_conf             027899988774378772687405989999997448976632---------3688889999999999737-676534007


Q ss_pred             CCCHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             89988999999679989997426637899
Q gi|254780975|r  177 GVTSRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       177 Gvn~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      |||.+|+.++.++|++.||-.-=-|-.|.
T Consensus       243 GiN~~n~a~Y~~~Gi~lfiTSAPYYAaP~  271 (277)
T TIGR01334       243 GINKENVADYLELGIDLFITSAPYYAAPA  271 (277)
T ss_pred             CCCHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf             87877899998625204642575435887


No 161
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.54  E-value=0.0024  Score=41.73  Aligned_cols=172  Identities=19%  Similarity=0.213  Sum_probs=114.6

Q ss_pred             EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCC--CCEEEEEEEEEE--CCHHHHHH
Q ss_conf             88170632588999999999996599899997342634584341789999864125--641685678851--20336764
Q gi|254780975|r    6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYS--DSVFDCHLMISS--IDSHINII   81 (224)
Q Consensus         6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t--~~~~dvHLMv~~--P~~~i~~~   81 (224)
                      +|.|=+-..|..+...-.+.|.++|+..+-+-. .      .....+.++.+++..  +.| ++.+=+=.  -...++..
T Consensus        17 ~iipVvr~~~~e~a~~~a~aL~~gGi~~iEiTl-r------t~~a~~~i~~l~~~~~~~~p-~~~iGaGTVl~~~~~~~a   88 (223)
T PRK07114         17 GMVPVFYHSDIEVAKKVVKACYDGGVRAFEFTN-R------GDFAHEVFGELVKYAAKECP-EMILGVGSIVDAATAALY   88 (223)
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEC-C------CCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHH
T ss_conf             979999828999999999999988998899958-8------96589999999999986689-808965518899999999


Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             047760799970664215899986776498--259985233344789988620140289983067765332201357789
Q gi|254780975|r   82 ADAGCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIR  159 (224)
Q Consensus        82 ~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~  159 (224)
                      .++|++.+.-..=    -.++++++++++.  -+|++    ||-|...-+-.-++.|=+.   |+-.|      -.+-++
T Consensus        89 ~~aGA~FiVSP~~----~~~v~~~~~~~~~~~iPGv~----TptEi~~A~~~G~~~vK~F---Pa~~~------G~~~lk  151 (223)
T PRK07114         89 IQLGANFVVGPLF----NEDIAKVCNRRKIPYSPGCG----SVSEIGFAEELGCEIVKIF---PGDVY------GPEFVK  151 (223)
T ss_pred             HHCCCCEEECCCC----CHHHHHHHHHCCCCCCCCCC----CHHHHHHHHHCCCCEEEEC---CCCCC------CHHHHH
T ss_conf             9859989999999----99999999983997537319----9999999998799979889---73235------999999


Q ss_pred             HHHHHHHCCCCEEEEECCC--CHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             9865431386526981589--98899999967998999742663789
Q gi|254780975|r  160 QAKALIGKRSISLEVDGGV--TSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       160 ~l~~~~~~~~~~I~vDGGv--n~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      .++.-++  +++++--|||  |.+|+.++.++|+-.+..||.+|..+
T Consensus       152 al~~p~p--~~~~~PtGGV~ps~~N~~~~l~ag~~~vG~GS~l~~~~  196 (223)
T PRK07114        152 AIKGPMP--WTSIMPTGGVEPTEENLKSWFKAGATCVGMGSKLFPKD  196 (223)
T ss_pred             HHHCCCC--CCCEEECCCCCCCHHHHHHHHHCCCEEEEECHHHCCHH
T ss_conf             9846499--99688799988735509999968997999884638999


No 162
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=97.54  E-value=0.0084  Score=38.22  Aligned_cols=152  Identities=16%  Similarity=0.251  Sum_probs=92.8

Q ss_pred             HHHHHHH-CCCCEEEEEEEEE-ECCH---HHHHHCCCCCCEEEE-----ECCCC--------CC---HHHHHHHHHHCC-
Q ss_conf             9998641-2564168567885-1203---367640477607999-----70664--------21---589998677649-
Q gi|254780975|r   53 VIRSLRS-YSDSVFDCHLMIS-SIDS---HINIIADAGCDIITF-----HPESS--------PH---IRRSLRTIHAMG-  110 (224)
Q Consensus        53 ~i~~i~~-~t~~~~dvHLMv~-~P~~---~i~~~~~~g~d~i~~-----H~E~~--------~~---~~~~i~~i~~~g-  110 (224)
                      .++++++ +++.++=+-+|.. +++.   +.+.+.++|+|.+-+     |....        .+   +.++.+++|+.- 
T Consensus        89 ~i~~~k~~~P~~~vIaSI~g~~~~e~w~~la~~~e~~GaDalELNiSCPn~~~~~~~G~~~gq~pe~v~~i~~~Vk~~~~  168 (413)
T PRK08318         89 EIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMVTRWVKRGSR  168 (413)
T ss_pred             HHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             99998860789708999945878899999999866518877999555677666665551105799999999999885068


Q ss_pred             CEEEEEEECC-CCHHHHHHHHHH--CCEEEEE-E----------------------EECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             8259985233-344789988620--1402899-8----------------------306776533220135778998654
Q gi|254780975|r  111 KKTGVAINPE-TPVAILEDVIDE--IDMILIM-T----------------------VNPGFGGQQLIESTIPKIRQAKAL  164 (224)
Q Consensus       111 ~k~Giai~p~-T~~~~i~~~l~~--~D~vliM-~----------------------V~PG~~Gq~f~~~~l~kI~~l~~~  164 (224)
                      .-+.+=|.|+ |.+..+..-+..  .|.|.+. |                      ..-|.+|....|-++..|.++.+.
T Consensus       169 iPV~vKLsPnvtdi~~iA~aa~~aGADgv~liNTi~~~~~iDid~~~~~p~i~~~~~~GGlSG~aikPiALr~V~~i~~~  248 (413)
T PRK08318        169 LPVIAKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARD  248 (413)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             85699828997528999999997699889998147865532022355302106777767666456769999999999863


Q ss_pred             HHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             313865269815899-8899999967998999742663789
Q gi|254780975|r  165 IGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       165 ~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      ....++.|.-=|||. .+.+-+..-+||+.+=+||++....
T Consensus       249 ~~~~~ipIiG~GGI~s~~Da~e~ilaGAsaVQv~Ta~~~~G  289 (413)
T PRK08318        249 PETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYG  289 (413)
T ss_pred             CCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHCC
T ss_conf             46788377975685989999999982789216751014338


No 163
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.53  E-value=0.0012  Score=43.63  Aligned_cols=99  Identities=22%  Similarity=0.349  Sum_probs=63.9

Q ss_pred             ECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH-HHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             706642158999867764982599852333447899886-2014028998306776533220135778998654313865
Q gi|254780975|r   92 HPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVI-DEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSI  170 (224)
Q Consensus        92 H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l-~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~  170 (224)
                      |......+.+.++..++.+...-+.+-.+ .++.+...+ ..+|.||+            .....+.+++.-++.+. ..
T Consensus       179 Hi~~~g~i~~av~~~~~~~~~~~IeVEve-~l~q~~~al~~g~d~ImL------------DNms~~~~~~av~~~~~-~~  244 (288)
T PRK06978        179 HIAAAGGVGEALDAAFALNAGVPVQIEVE-TLAQLETALAHGAQSVLL------------DNFTLDMMREAVRVTAG-RA  244 (288)
T ss_pred             HHHHCCCHHHHHHHHHHHCCCCCEEEEEC-CHHHHHHHHHCCCCEEEE------------CCCCHHHHHHHHHHHCC-CE
T ss_conf             68763889999999998189986599964-477789998489999995------------79999999999996479-67


Q ss_pred             EEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             2698158998899999967998999742663789
Q gi|254780975|r  171 SLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       171 ~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      .+++-||||.+|+..+...|+|.+.+|+-..+.+
T Consensus       245 ~lEaSGgI~~~ni~~yA~tGVD~IS~GaLThsa~  278 (288)
T PRK06978        245 VLEVSGGVNFDTVRAFAETGVDRISIGALTKDVR  278 (288)
T ss_pred             EEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf             9999899999999999966999998885436998


No 164
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.53  E-value=0.0016  Score=42.79  Aligned_cols=91  Identities=16%  Similarity=0.311  Sum_probs=56.9

Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEC
Q ss_conf             89998677649825998523334478998862-014028998306776533220135778998654313--865269815
Q gi|254780975|r  100 RRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK--RSISLEVDG  176 (224)
Q Consensus       100 ~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~--~~~~I~vDG  176 (224)
                      ...+..+|......=+.+-.+| ++.+...++ .+|.||+         -.|.+..+.+   +.++...  .++.+++-|
T Consensus       171 ~~~v~~~k~~~~~~kIeVEv~~-~~q~~~a~~~g~d~I~L---------Dn~s~~~ik~---~v~~~~~~~~~v~ieaSG  237 (272)
T cd01573         171 LKALARLRATAPEKKIVVEVDS-LEEALAAAEAGADILQL---------DKFSPEELAE---LVPKLRSLAPPVLLAAAG  237 (272)
T ss_pred             HHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCCCEEEE---------CCCCHHHHHH---HHHHHHCCCCCEEEEEEC
T ss_conf             9999999862999708998399-99999998469999997---------7999999999---999974448876999989


Q ss_pred             CCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             8998899999967998999742663789
Q gi|254780975|r  177 GVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       177 Gvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      |||.+|+..+.+.|+|.+ ++|+++.++
T Consensus       238 gI~~~ni~~yA~tGvD~I-s~~a~~~a~  264 (272)
T cd01573         238 GINIENAAAYAAAGADIL-VTSAPYYAK  264 (272)
T ss_pred             CCCHHHHHHHHHCCCCEE-ECCHHHCCC
T ss_conf             999999999997399999-808432776


No 165
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.52  E-value=0.00095  Score=44.28  Aligned_cols=80  Identities=19%  Similarity=0.301  Sum_probs=48.5

Q ss_pred             CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECH
Q ss_conf             344789988620-14028998306776533220135778998654313865269815899-8899999967998999742
Q gi|254780975|r  121 TPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGS  198 (224)
Q Consensus       121 T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gs  198 (224)
                      .|++....|-+. +|++.+.=.+ |-.|++-+...+   +++.+   +...+|++.|||+ .+.+..+.++||+.++.||
T Consensus        30 dP~~~a~~~~~~Ga~~lhvvDLd-aa~g~~~N~~~I---~~i~~---~~~~piqvGGGIrs~e~~~~~l~~Ga~kViigS  102 (231)
T PRK13586         30 DPLKIAEELYNEGYDSIHVVDLD-AAEGKGDNEEYI---KRICK---IGFSWIQVGGGIRDVEKAERLLSYDCSAIVMST  102 (231)
T ss_pred             CHHHHHHHHHHCCCCEEEEEECC-CCCCCCCHHHHH---HHHHH---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECH
T ss_conf             99999999998799989999671-568998439999---99997---459857985671769999999977998899768


Q ss_pred             HHHCCCCHH
Q ss_conf             663789989
Q gi|254780975|r  199 SFFNQKGEI  207 (224)
Q Consensus       199 aif~~~d~~  207 (224)
                      +.|++++..
T Consensus       103 ~a~~np~~~  111 (231)
T PRK13586        103 LPFTNPDTF  111 (231)
T ss_pred             HHHHCHHHH
T ss_conf             887695999


No 166
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.50  E-value=0.0014  Score=43.29  Aligned_cols=116  Identities=21%  Similarity=0.279  Sum_probs=73.3

Q ss_pred             CHHHHHHCC-CC---------CCEEEE---ECCCCCCHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHH-HCCEEEEE
Q ss_conf             033676404-77---------607999---706642158999867764982-5998523334478998862-01402899
Q gi|254780975|r   75 DSHINIIAD-AG---------CDIITF---HPESSPHIRRSLRTIHAMGKK-TGVAINPETPVAILEDVID-EIDMILIM  139 (224)
Q Consensus        75 ~~~i~~~~~-~g---------~d~i~~---H~E~~~~~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~-~~D~vliM  139 (224)
                      .+++++++- +|         .|.+-+   |......+.+.++.+|+.... .-+.+..+ .++.+...++ .+|.||+ 
T Consensus       146 lR~l~kyAV~~GGg~nHR~gLsd~vLIKdNHl~~~g~i~~av~~~r~~~~~~~kIeVEv~-~l~q~~~a~~~g~DiIlL-  223 (290)
T PRK06559        146 LRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVE-SLAAAEEAAAAGVDIIML-  223 (290)
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC-CHHHHHHHHHCCCCEEEE-
T ss_conf             079999999965910536985010676521576515799999999985898766999856-899999998669999998-


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             83067765332201357789986543138652698158998899999967998999742663789
Q gi|254780975|r  140 TVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       140 ~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                              -.|.+   +.+++.-++.+ .+..+++-||||.+|+.++.+.|+|.++.|+--.+.+
T Consensus       224 --------DNms~---~~i~~av~~i~-~~~~lEaSGgI~~~ni~~yA~tGVD~IS~g~Lthsa~  276 (290)
T PRK06559        224 --------DNMSL---EQIEQAITLIA-GRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHSAK  276 (290)
T ss_pred             --------CCCCH---HHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHCCCCEEECCHHCCCCC
T ss_conf             --------79899---99999999857-9679999789989999999973999998882206996


No 167
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase,  is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.50  E-value=0.007  Score=38.72  Aligned_cols=169  Identities=18%  Similarity=0.243  Sum_probs=113.9

Q ss_pred             EEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCC
Q ss_conf             1881706325889999999999965998999973426345843417899998641-256416856788512033676404
Q gi|254780975|r    5 IQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVFDCHLMISSIDSHINIIAD   83 (224)
Q Consensus         5 ~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~   83 (224)
                      -+|.|=+-..+..+.....+.+.++|+..+-+-.-.    |   -..+.++.+++ ++++.+=+. =|.+ ...++...+
T Consensus         4 ~~iiaVlr~~~~~~a~~~~~al~~~Gi~~iEitl~t----~---~a~~~i~~l~~~~~~~~iGaG-TV~~-~~~~~~a~~   74 (190)
T cd00452           4 QPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRT----P---GALEAIRALRKEFPEALIGAG-TVLT-PEQADAAIA   74 (190)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC----C---HHHHHHHHHHHHCCCCEEEEC-CCCC-HHHHHHHHH
T ss_conf             977999977999999999999998699889996788----0---299999999986898089652-3477-999999998


Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             7760799970664215899986776498--25998523334478998862014028998306776533220135778998
Q gi|254780975|r   84 AGCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQA  161 (224)
Q Consensus        84 ~g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l  161 (224)
                      +|++.+.-..=  +  .++++++++++.  -+|++    ||-|...-+-.-++.+-+   -|....      -.+-++.+
T Consensus        75 aGa~FivsP~~--~--~~v~~~a~~~~~~~iPGv~----TpsEi~~A~~~G~~~vK~---FPa~~~------G~~~lkal  137 (190)
T cd00452          75 AGAQFIVSPGL--D--PEVVKAANRAGIPLLPGVA----TPTEIMQALELGADIVKL---FPAEAV------GPAYIKAL  137 (190)
T ss_pred             CCCCEEECCCC--C--HHHHHHHHHCCCCEECCCC----CHHHHHHHHHCCCCEEEE---CCCCCC------CHHHHHHH
T ss_conf             59989973779--9--9999999982996657879----999999999879998998---955114------99999998


Q ss_pred             HHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             6543138652698158998899999967998999742663
Q gi|254780975|r  162 KALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       162 ~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif  201 (224)
                      +.-++  ++.++.=|||+.+|+....++|+.-+-.||.++
T Consensus       138 ~~pfp--~~~~~ptGGI~~~N~~~yl~~gv~avG~g~~l~  175 (190)
T cd00452         138 KGPFP--QVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLP  175 (190)
T ss_pred             HCCCC--CCCEEEECCCCHHHHHHHHHCCCEEEEECHHCC
T ss_conf             55489--993899679998889999968998999541258


No 168
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063   1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=97.49  E-value=0.00033  Score=47.16  Aligned_cols=90  Identities=17%  Similarity=0.379  Sum_probs=64.7

Q ss_pred             CCCCHHHHHHHHH-H-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEE
Q ss_conf             3334478998862-0-14028998306776533220135778998654313865269815899-8899999967998999
Q gi|254780975|r  119 PETPVAILEDVID-E-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLV  195 (224)
Q Consensus       119 p~T~~~~i~~~l~-~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V  195 (224)
                      -+.|.+.-+.|-+ + ..++++-=.+--++|++-+...+++|.+      ..+.+|||=|||+ .+.+..|.+.|++.+|
T Consensus        27 ~d~P~~~A~~~~~~~GA~~iHvVDLDGA~~g~~~N~~~i~~I~~------~~~~~vQvGGGIRs~e~v~~ll~~Gv~RVI  100 (241)
T TIGR00007        27 SDDPVEAAKKWEEFQGAKRIHVVDLDGALEGGPVNLEVIKKIVE------ELGVPVQVGGGIRSLEDVEKLLDLGVDRVI  100 (241)
T ss_pred             ECCHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCHHHHHHHHHH------HCCCCEEECCCCCCHHHHHHHHHCCCCEEE
T ss_conf             08989999999841697159998451000686200789999998------618517981751688999999973985799


Q ss_pred             ECHHHHCCCCHHHHHHHHHHH
Q ss_conf             742663789989999999999
Q gi|254780975|r  196 VGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       196 ~Gsaif~~~d~~~~~~~l~~l  216 (224)
                      .||+-|++++..  .+.+++.
T Consensus       101 ~GT~A~~~~~~v--~~~~~~~  119 (241)
T TIGR00007       101 IGTAAVENPDLV--KELLKEY  119 (241)
T ss_pred             EEEEEECCHHHH--HHHHHHH
T ss_conf             733221086999--9999984


No 169
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=97.49  E-value=0.004  Score=40.28  Aligned_cols=128  Identities=23%  Similarity=0.303  Sum_probs=78.8

Q ss_pred             HHHHHHCCCCCCEEEEECCC--CCCHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCC--CCCC
Q ss_conf             33676404776079997066--42158999867764982-5998523334478998862-01402899830677--6533
Q gi|254780975|r   76 SHINIIADAGCDIITFHPES--SPHIRRSLRTIHAMGKK-TGVAINPETPVAILEDVID-EIDMILIMTVNPGF--GGQQ  149 (224)
Q Consensus        76 ~~i~~~~~~g~d~i~~H~E~--~~~~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~--~Gq~  149 (224)
                      .-.+.+.++|+|.+++-.-+  ..+..++++++|+..-. .-+|=|-.|.- ....++. -+|.|.+ ++-||-  .-+.
T Consensus       156 era~~Lv~AGvD~lvID~AhGhs~~~~e~ik~ik~~~p~v~VIaGNVaT~~-~a~~Li~aGAD~VkV-GiGpGsiCTTr~  233 (404)
T PRK06843        156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKTIKNKYPNLDLIAGNIVTKE-AALDLINVGADCLKV-GIGPGSICTTRI  233 (404)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHH-HHHHHHHHCCCEEEE-CCCCCCCCCCCC
T ss_conf             999999976999999968875217899999999976799616630305799-999999819899995-654787725665


Q ss_pred             ---CCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             ---220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r  150 ---LIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       150 ---f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                         +--..+.-|.+..+.....++.|..||||+ .-.+.+.+.+|||.+-+||.+-+..+
T Consensus       234 v~GvGvPq~tAi~d~~~~a~~~~v~IIADGGI~~sGDi~KAlA~GAdaVMlGs~lAgt~E  293 (404)
T PRK06843        234 VAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKE  293 (404)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCHHCCCCC
T ss_conf             458687489999999999605799788368746532799999718988886713136766


No 170
>cd04732 HisA HisA.  Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.49  E-value=0.00091  Score=44.40  Aligned_cols=27  Identities=30%  Similarity=0.458  Sum_probs=16.0

Q ss_pred             EEEEC---CCCHHHHHHHHHC-CCCEEEECH
Q ss_conf             69815---8998899999967-998999742
Q gi|254780975|r  172 LEVDG---GVTSRNIKSLVQA-GADLLVVGS  198 (224)
Q Consensus       172 I~vDG---Gvn~~~i~~l~~~-Gad~~V~Gs  198 (224)
                      +.-||   |.+.+.+..+.+. ...++++|+
T Consensus       168 i~~dGt~~G~d~~ll~~i~~~~~~p~i~~GG  198 (234)
T cd04732         168 ISRDGTLSGPNFELYKELAAATGIPVIASGG  198 (234)
T ss_pred             ECCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             4256653568999999998657998999818


No 171
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.48  E-value=0.00097  Score=44.20  Aligned_cols=27  Identities=26%  Similarity=0.374  Sum_probs=15.1

Q ss_pred             EEEEC---CCCHHHHHHHHHC-CCCEEEECH
Q ss_conf             69815---8998899999967-998999742
Q gi|254780975|r  172 LEVDG---GVTSRNIKSLVQA-GADLLVVGS  198 (224)
Q Consensus       172 I~vDG---Gvn~~~i~~l~~~-Gad~~V~Gs  198 (224)
                      |.-||   |.|.+.++.+.+. +..++.+|+
T Consensus       170 I~rDGtl~G~n~el~~~i~~~~~~pvIaSGG  200 (234)
T PRK13587        170 IAKDGKMSGPNFELTGQLVKATTIPVIASGG  200 (234)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf             2665745579999999999767999999899


No 172
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=97.46  E-value=0.011  Score=37.47  Aligned_cols=125  Identities=20%  Similarity=0.297  Sum_probs=82.4

Q ss_pred             CHHHHHHCCCCCCEEEEECCCC--CCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCC-----
Q ss_conf             0336764047760799970664--215899986776498-25998523334478998862-01402899830677-----
Q gi|254780975|r   75 DSHINIIADAGCDIITFHPESS--PHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMTVNPGF-----  145 (224)
Q Consensus        75 ~~~i~~~~~~g~d~i~~H~E~~--~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~-----  145 (224)
                      ..-.+.+.++|+|.|++-.-+-  ....+.++++|+.-- -.-+|=|..|.- ..+.+++ -+|.|-+ ++-||-     
T Consensus       225 ~eRa~~Lv~aGvDvivIDtAhGhs~~vi~~ik~ik~~~p~~~iIaGNVaT~e-~a~~Li~aGAD~vKV-GiGpGSiCTTR  302 (467)
T pfam00478       225 LERAEALVEAGVDVIVIDSAHGHSEYVLEMIKWIKKKYPDLDVIAGNVVTAE-AARELIDAGADAVKV-GIGPGSICTTR  302 (467)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHH-HHHHHHHHCCCEEEE-CCCCCCCCCCC
T ss_conf             9999999876998899734454418899999998740787737851005899-999999707775775-56688656564


Q ss_pred             ----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             ----6533220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r  146 ----GGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       146 ----~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                          -|-|.    +.-|.+..+...++++.|+.||||+ .-.+.+...+|||.+-+||.+-+.+.
T Consensus       303 ~v~GvG~PQ----~tAv~~~a~~a~~~~vpiIADGGi~~sGDi~KAlaaGAd~VMlGsllAGt~E  363 (467)
T pfam00478       303 EVAGVGRPQ----LTAVYEVADAARKLGVPVIADGGIRYSGDIAKALAAGASAVMLGSLLAGTEE  363 (467)
T ss_pred             CCCCCCCCH----HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHCCCCC
T ss_conf             203667750----8799999999865698799447623304899998728988987722257777


No 173
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.39  E-value=0.014  Score=36.86  Aligned_cols=192  Identities=16%  Similarity=0.170  Sum_probs=126.2

Q ss_pred             ECHHH--HCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             81706--3258899999999999659989999734263458434178999986412564168567885120336764047
Q gi|254780975|r    7 IVPSI--LAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         7 IspSi--l~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      -|||-  +..++. ..+..+..+++|++-+-+ ..|..|   |.=+++.++.+|+.+++|+=.-=-+-+| ..+.+-..+
T Consensus        50 aSPSkG~i~~~~d-p~~iA~~Y~~~GA~aiSV-LTe~~~---F~Gs~~~L~~v~~~v~lPiLrKDFIid~-~QI~ea~~~  123 (247)
T PRK13957         50 KSPSAGELRADYH-PVQIAKTYETLGASAISV-LTDQSY---FGGSLEDLKSVSSELKIPVLRKDFILDE-IQIREARAF  123 (247)
T ss_pred             CCCCCCCCCCCCC-HHHHHHHHHHCCCCEEEE-CCCCCC---CCCCHHHHHHHHHHCCCCEEEEEEECCH-HHHHHHHHC
T ss_conf             8999887578899-999999999779928998-278566---7998999999998579984741120649-999999973


Q ss_pred             CCCEEEEECCCCC--CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf             7607999706642--15899986776498259985233344789988620140289983067765332201357789986
Q gi|254780975|r   85 GCDIITFHPESSP--HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK  162 (224)
Q Consensus        85 g~d~i~~H~E~~~--~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~  162 (224)
                      |||.|..=+....  ++.+.++.+++.|..+=+=++-...++....+  ..+   +.+||-.-= ..|.- .++...++.
T Consensus       124 GADaILLIaa~L~~~~l~~l~~~A~~lGle~LvEvH~~~El~~al~~--~~~---iIGINNRnL-~tf~v-d~~~~~~l~  196 (247)
T PRK13957        124 GASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDC--GAE---IIGINTRDL-DTFQI-HQNLVEEVA  196 (247)
T ss_pred             CCCEEHHHHHCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC--CCC---EEEEECCCC-CCCCC-CHHHHHHHH
T ss_conf             99851268850899999999999998388156255899999999848--998---898745773-21463-988999998


Q ss_pred             HHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf             54313865269815899-8899999967998999742663789989999999
Q gi|254780975|r  163 ALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL  213 (224)
Q Consensus       163 ~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l  213 (224)
                      .++|. +..+-.-.||+ .+.+..+.+. +|.+-+|+++-+++|+..+.+.|
T Consensus       197 ~~ip~-~~~~VsESGI~~~~di~~l~~~-~da~LIGeslMk~~d~~~a~~~L  246 (247)
T PRK13957        197 AFLPP-NIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAWLSL  246 (247)
T ss_pred             HHCCC-CCEEEECCCCCCHHHHHHHHHH-CCEEEECHHHHCCCCHHHHHHHH
T ss_conf             43899-9879967899999999999973-99999886775699999999975


No 174
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.36  E-value=0.008  Score=38.34  Aligned_cols=161  Identities=15%  Similarity=0.238  Sum_probs=95.6

Q ss_pred             CCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECC-----HH-----HHHHCCCCCCEEEE-ECCCC---CCHHHHHHH
Q ss_conf             263458434178999986412564168567885120-----33-----67640477607999-70664---215899986
Q gi|254780975|r   40 DGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSID-----SH-----INIIADAGCDIITF-HPESS---PHIRRSLRT  105 (224)
Q Consensus        40 Dg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~-----~~-----i~~~~~~g~d~i~~-H~E~~---~~~~~~i~~  105 (224)
                      |=.++|.++    .+..+.+.++++    +..+|..     .|     .+.+.++|++++.+ |.|--   .+..+.++.
T Consensus        38 ~v~v~Pp~~----~L~~v~~~~~i~----v~AQn~~~~~~GA~TGevS~~mL~d~G~~~vIlGHSERR~~~~E~~~~v~~  109 (223)
T PRK04302         38 TIAVAPQAL----DLYRVAEEVEIP----VYAQHVDAVGPGAHTGHILPEAVKDAGAVGTLLNHSERRLRLADIEAAVER  109 (223)
T ss_pred             EEEEECCHH----HHHHHHHHCCCE----EEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCHHHHHCCCHHHHHHH
T ss_conf             899979999----999999736980----995438898786862633099999859999995653310003227999999


Q ss_pred             HHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEEC----CCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCC
Q ss_conf             77649825998523334478998862014028998306----77653322013577899865431--3865269815899
Q gi|254780975|r  106 IHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNP----GFGGQQLIESTIPKIRQAKALIG--KRSISLEVDGGVT  179 (224)
Q Consensus       106 i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~P----G~~Gq~f~~~~l~kI~~l~~~~~--~~~~~I~vDGGvn  179 (224)
                      +.+.|..+-+.+  ++.. ..... ..++-. +..-+|    | .|+.-.+...+.|+++.+...  ..++.|---||||
T Consensus       110 a~~~gl~~I~Cv--~~~~-~~~~~-~~l~~~-~IAYEPvWAIG-TG~~as~~~~e~i~~~~~~~~~~~~~i~ILYGGsV~  183 (223)
T PRK04302        110 AKELGLESVVCT--NNPE-TSAAA-AALGPD-AVAVEPPELIG-TGIPVSKAKPEVVTGTVEAVRKVNPDVKVLCGAGIS  183 (223)
T ss_pred             HHHCCCEEEEEC--CCHH-HHHHH-HHCCCC-EEEECCHHHHC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             998699489972--7399-88899-865899-89988889844-898766258999999999999647997589978468


Q ss_pred             HHH-HHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf             889-99999679989997426637899899999999
Q gi|254780975|r  180 SRN-IKSLVQAGADLLVVGSSFFNQKGEISYAKRLN  214 (224)
Q Consensus       180 ~~~-i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~  214 (224)
                      ..| ...+.+.|+|-+-+|||..+++||....+.|-
T Consensus       184 ~~n~~~~~~~~~vDG~LVGgAsLkA~Dp~~~l~~l~  219 (223)
T PRK04302        184 TGEDVKAALELGADGVLLASGVVKAKDPEAALRDLV  219 (223)
T ss_pred             HHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHH
T ss_conf             788999974689985897625666879999999999


No 175
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.35  E-value=0.0029  Score=41.19  Aligned_cols=115  Identities=21%  Similarity=0.343  Sum_probs=71.2

Q ss_pred             HHHHHHCC-CC---------CCEEEE---ECCCCCCHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHH-HCCEEEEEE
Q ss_conf             33676404-77---------607999---70664215899986776498-25998523334478998862-014028998
Q gi|254780975|r   76 SHINIIAD-AG---------CDIITF---HPESSPHIRRSLRTIHAMGK-KTGVAINPETPVAILEDVID-EIDMILIMT  140 (224)
Q Consensus        76 ~~i~~~~~-~g---------~d~i~~---H~E~~~~~~~~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~-~~D~vliM~  140 (224)
                      +++++++- +|         .|.+-+   |......+.+.++..|+... ..-|.+-.+| ++.+...++ .+|.||+  
T Consensus       142 R~leKyAV~~GGg~nHR~gL~d~iLIKdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~s-l~q~~~al~~g~d~ImL--  218 (281)
T PRK06106        142 RALEKYAVRAGGGSNHRFGLDDAVLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDT-LEQLEEALELGVDAVLL--  218 (281)
T ss_pred             HHHHHHHHHHCCEEECCCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHCCCCEEEE--
T ss_conf             599999999679851058887537777879874388999999999757997249999699-99999997279989998--


Q ss_pred             EECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             3067765332201357789986543138652698158998899999967998999742663789
Q gi|254780975|r  141 VNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       141 V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                             -.|   ..+.+++..++.++ ...+++-||||.+|+..+.+.|+|.+.+|+-.-+.+
T Consensus       219 -------DNm---sp~~~~~av~~~~~-~~~~EaSGgI~~~ni~~yA~tGvD~IS~g~lthsa~  271 (281)
T PRK06106        219 -------DNM---SPDTLREAVAIVAG-RAITEASGRITPETAPAIAASGVDLISVGWLTHSAP  271 (281)
T ss_pred             -------CCC---CHHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf             -------799---99999999998568-468999789999999999973999998384326997


No 176
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=97.34  E-value=0.015  Score=36.55  Aligned_cols=187  Identities=19%  Similarity=0.265  Sum_probs=101.9

Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf             63258899999999999659989999734263458434178999986412564168567885120336764047760799
Q gi|254780975|r   11 ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIIT   90 (224)
Q Consensus        11 il~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~   90 (224)
                      ++--|....++.++.+.++|.|.+=+-=-++    +.++ ...++.+++.+++|+  =|-.-+|..     ...++|.+.
T Consensus        13 liDPdk~~~~~~~~~~~~sgtDaI~VGGS~~----~~~~-d~~v~~ik~~~~lPv--iLfPg~~~~-----vs~~aDail   80 (231)
T pfam01884        13 LLDPDETNPEEIIEIVAESGTDAIMIGGSTG----GVTL-DNVVRLIKKVYGLPI--ILFPGNPSG-----VSRYADAIF   80 (231)
T ss_pred             EECCCCCCCHHHHHHHHHCCCCEEEECCCCC----CCCH-HHHHHHHHHHCCCCE--EEECCCHHH-----CCCCCCEEE
T ss_conf             8789999969999999974999999889888----8568-999999998539998--995698676-----586778466


Q ss_pred             EECCC-CCCHHH-------HHHHHHHCCCEE----EEEEECCCC--------------HHHHHHHH--HHCCEEEEEEEE
Q ss_conf             97066-421589-------998677649825----998523334--------------47899886--201402899830
Q gi|254780975|r   91 FHPES-SPHIRR-------SLRTIHAMGKKT----GVAINPETP--------------VAILEDVI--DEIDMILIMTVN  142 (224)
Q Consensus        91 ~H~E~-~~~~~~-------~i~~i~~~g~k~----Giai~p~T~--------------~~~i~~~l--~~~D~vliM~V~  142 (224)
                      |..=- ..++..       ....+++.+.++    =+.++|++.              .+....+.  .+.=..-++=.+
T Consensus        81 f~sllNs~np~~lig~qv~aa~~~~~~~~e~ip~gYivi~~g~~v~~vs~a~~i~~~~~~iaa~~alA~~~~g~~~iYLE  160 (231)
T pfam01884        81 FMSLLNSANPDWIVGAHALGAQTVKKIGEEIIPMGYIVVEPDSKVGWVGEARPIPRNKPDIAAYYALAAKLLGMRIFYLE  160 (231)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEECCEECCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             56410489905676279988998765050053036788759971366436623799959999999999997098189997


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf             6776533220135778998654313865269815899-88999999679989997426637899899999999
Q gi|254780975|r  143 PGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLN  214 (224)
Q Consensus       143 PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~  214 (224)
                      -|-+-..-.+..  -++..+++   .+..+.|-|||+ .+.+.++.++|||.+|.|+.+..++|.....+.+.
T Consensus       161 aGSGa~~~vp~~--vi~~~~~~---~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~d~~~~~~~~~  228 (231)
T pfam01884       161 AGSGAPGPVPEE--VIAVKKVL---DDARLIVGGGIKSGEKAKEMARAGADVIVTGNVIEEKGDREMAIDAIL  228 (231)
T ss_pred             CCCCCCCCCCHH--HHHHHHCC---CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCEEECCCHHHHHHHHH
T ss_conf             589999998999--99999646---897689969979999999999779999997971441776999999998


No 177
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.31  E-value=0.0031  Score=41.01  Aligned_cols=115  Identities=22%  Similarity=0.290  Sum_probs=71.5

Q ss_pred             CHHHHHHCC-CC---------CCEEEE---ECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEE
Q ss_conf             033676404-77---------607999---7066421589998677649825998523334478998862-014028998
Q gi|254780975|r   75 DSHINIIAD-AG---------CDIITF---HPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMT  140 (224)
Q Consensus        75 ~~~i~~~~~-~g---------~d~i~~---H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~  140 (224)
                      .+++++|+- +|         .|.+-+   |..+...+.+.++..++.....-+.+-.+ .++.+...++ .+|.||+  
T Consensus       158 lR~leKyAV~~GGG~nHR~gL~D~iLIKdNHi~~~g~i~~av~~ar~~~~~~~IeVEv~-~l~q~~eal~~gaDiIlL--  234 (296)
T PRK09016        158 LRSALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVE-NLDELDQALKAGADIIML--  234 (296)
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCCCEEEEEC-CHHHHHHHHHCCCCEEEE--
T ss_conf             40999999996791233587610799855605651789999999998689985899968-789999999659999998--


Q ss_pred             EECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             306776533220135778998654313865269815899889999996799899974266378
Q gi|254780975|r  141 VNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQ  203 (224)
Q Consensus       141 V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~  203 (224)
                                .....+.+++.-++... ...+++-||||.+|+..+.+.|+|.+-+|+---+.
T Consensus       235 ----------DN~s~~~~k~av~~~~~-~~~lEaSGgI~l~ni~~yA~tGVD~IS~GaLThs~  286 (296)
T PRK09016        235 ----------DNFTTEQMREAVKRTNG-KAALEVSGNVTLETLREFAETGVDFISVGALTKHV  286 (296)
T ss_pred             ----------CCCCHHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCC
T ss_conf             ----------89899999999997479-67999878998999999997299999888766699


No 178
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=97.28  E-value=0.018  Score=36.11  Aligned_cols=166  Identities=17%  Similarity=0.186  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEE-C-------------CHHHHHHCCC
Q ss_conf             9999999996599899997342634584341789999864125641685678851-2-------------0336764047
Q gi|254780975|r   19 LGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISS-I-------------DSHINIIADA   84 (224)
Q Consensus        19 l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~-P-------------~~~i~~~~~~   84 (224)
                      ++..+ ...++|+|.+.+  +..-..-.+|=++..++..++..++  .||.|+-. +             .+-+..+.++
T Consensus        11 ~e~a~-~A~~~GAdRIEL--Cs~L~~GGlTPS~g~i~~~~~~~~i--PV~vMIRPR~GdF~Ys~~E~~~M~~dI~~~~~~   85 (248)
T PRK11572         11 MECAL-TAQQNGADRIEL--CAAPKEGGLTPSLGVLKSVRERVTI--PVHPIIRPRGGDFCYSDGEFAAMLEDIRTVREL   85 (248)
T ss_pred             HHHHH-HHHHCCCCEEEE--CCCCCCCCCCCCHHHHHHHHHHCCC--CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             99999-999839998997--4787668979999999999986699--738999426998867989999999999999986


Q ss_pred             CCCEEEEECCC---CCCHHHHHHHHHHCC---CEEEEEEEC-CCCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHH
Q ss_conf             76079997066---421589998677649---825998523-3344789988620-140289983067765332201357
Q gi|254780975|r   85 GCDIITFHPES---SPHIRRSLRTIHAMG---KKTGVAINP-ETPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIP  156 (224)
Q Consensus        85 g~d~i~~H~E~---~~~~~~~i~~i~~~g---~k~Giai~p-~T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~  156 (224)
                      |++=+.|=+=+   .-|....-+++...+   +-+-=|+.- ..|.+.++.+++. +|+||-      -+|++-...-++
T Consensus        86 Ga~GvV~G~L~~dg~iD~~~~~~Li~~a~~l~vTFHRAfD~~~dp~~ale~Li~lG~~rILT------SG~~~~A~~G~~  159 (248)
T PRK11572         86 GFPGLVTGVLDVDGHVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLNALKNLAELGVARILT------SGQQSDAEQGLS  159 (248)
T ss_pred             CCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECHHHCCCCHHHHHHHHHHCCCCEEEC------CCCCCCHHHHHH
T ss_conf             99967996688999849999999999748980798620221499999999999759998988------999787778899


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf             78998654313865269815899889999996799899974
Q gi|254780975|r  157 KIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVG  197 (224)
Q Consensus       157 kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~G  197 (224)
                      .++++.+..+  +..|..-||||.+|++.+.+.|++-+=+.
T Consensus       160 ~L~~L~~~a~--~~iIm~GgGV~~~Ni~~~~~tG~~eiH~S  198 (248)
T PRK11572        160 LIMELIAQGD--APIIMAGAGVRAENLQKFLDAGVREVHSS  198 (248)
T ss_pred             HHHHHHHHCC--CCEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf             9999998449--96898789989999999997597789735


No 179
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=97.28  E-value=0.0087  Score=38.13  Aligned_cols=178  Identities=19%  Similarity=0.262  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEEC--CEECCCCCCCHHHHHHHHHCCC-CEEEEEEEEEE-----C--CHHHHHHCCCCCC
Q ss_conf             99999999996599899997342--6345843417899998641256-41685678851-----2--0336764047760
Q gi|254780975|r   18 RLGEEISNITKAGAKQIHFDVMD--GCFVPNISFGADVIRSLRSYSD-SVFDCHLMISS-----I--DSHINIIADAGCD   87 (224)
Q Consensus        18 ~l~~~i~~l~~~~~d~iHiDImD--g~fvpn~~~~~~~i~~i~~~t~-~~~dvHLMv~~-----P--~~~i~~~~~~g~d   87 (224)
                      .+++..+.+.+..+..+=  |+|  |..+.=+|.  ..+...+.++. ..-+-+|+|--     +  ..-.+.+.++|+|
T Consensus       166 sl~eA~~lL~~~kiekLp--vVd~~~~L~gLiT~--kDi~k~~~~~~a~D~~grL~VgAAVGv~~d~~eR~~aLv~AGvD  241 (479)
T PRK07807        166 DPRKAFDLLEAAPVKVAP--VVDADGRLAGVLTR--TGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGVD  241 (479)
T ss_pred             CHHHHHHHHHHCCCCCCE--EECCCCEEEEEEEE--EHHHHCCCCCCCCCHHHCEEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             879999999753523113--77569929999996--11645446887778223456788725784589999999976998


Q ss_pred             EEEEECCCC--CCHHHHHHHHHHCCCEEE-EEEECCCCHHHHHHHHHH-CCEEEEEEEECCC---------CCCCCCCHH
Q ss_conf             799970664--215899986776498259-985233344789988620-1402899830677---------653322013
Q gi|254780975|r   88 IITFHPESS--PHIRRSLRTIHAMGKKTG-VAINPETPVAILEDVIDE-IDMILIMTVNPGF---------GGQQLIEST  154 (224)
Q Consensus        88 ~i~~H~E~~--~~~~~~i~~i~~~g~k~G-iai~p~T~~~~i~~~l~~-~D~vliM~V~PG~---------~Gq~f~~~~  154 (224)
                      .+++-.-+-  ....+.++++|+..-.+- +|=|-.|. +-.+.+++- +|.|- .++-||-         -|-+    .
T Consensus       242 vlvIDtAHGhS~~vi~~vk~iK~~~p~~~viaGNvaT~-~~a~~Li~aGad~ik-vGiG~GSiCtTr~v~gvG~p----q  315 (479)
T PRK07807        242 VLVIDTAHGHQEKMLEAIRAVRALDPGVPLVAGNVVTA-EGTRDLVEAGADIVK-VGVGPGAMCTTRMMTGVGRP----Q  315 (479)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHH-HHHHHHHHCCCCEEE-CCCCCCCCEECCCCCCCCCC----H
T ss_conf             99975457664899999999984089885787432029-999999973999763-15557832434632377886----0


Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             5778998654313865269815899-88999999679989997426637899
Q gi|254780975|r  155 IPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       155 l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      +.-|.+..+...+.++.|..||||+ .-.+.+...+|||.+-.||.+-+.+.
T Consensus       316 ~tAi~~~a~~a~~~gvpiIADGGIr~sGdi~KAla~GA~~VMlGsllAGt~E  367 (479)
T PRK07807        316 FSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYE  367 (479)
T ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf             9999999999875699789458725346799998728987888830157777


No 180
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.27  E-value=0.018  Score=36.06  Aligned_cols=196  Identities=16%  Similarity=0.138  Sum_probs=126.2

Q ss_pred             ECHH--HHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             8170--63258899999999999659989999734263458434178999986412564168567885120336764047
Q gi|254780975|r    7 IVPS--ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         7 IspS--il~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      =|||  +++.++ +..+.-+..+++|+.-+-+ ..|..|   |.=+.+.+..+|+..++|+=.-=-+-+|.. |-+-...
T Consensus        59 aSPSkG~I~~~~-dp~~iA~~Ye~~GA~aISV-LTe~~~---F~Gsl~dL~~vr~~v~lPvLRKDFIvD~yQ-I~EAr~~  132 (695)
T PRK13802         59 ASPSKGHLSDIP-DPAALAREYEKGGASAISV-LTEGRK---FLGSLDDFDKVRAAVHIPVLRKDFIVTDYQ-IFEARAH  132 (695)
T ss_pred             CCCCCCCCCCCC-CHHHHHHHHHHCCCEEEEE-ECCCCC---CCCCHHHHHHHHHHCCCCEEECCEECCHHH-HHHHHHC
T ss_conf             999878768889-9999999999879849998-258676---798999999999858998570233063999-9999982


Q ss_pred             CCCEEEEECCCCCC--HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf             76079997066421--5899986776498259985233344789988620140289983067765332201357789986
Q gi|254780975|r   85 GCDIITFHPESSPH--IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK  162 (224)
Q Consensus        85 g~d~i~~H~E~~~~--~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~  162 (224)
                      |+|.|-+-....++  +.+.++..++.|+.+=+=++-.   ++++.-+..  ---+.+||-..= ..| +--++.-.++.
T Consensus       133 GADaILLIva~L~~~~L~~l~~~a~~LGm~~LVEVH~~---~El~rAl~~--ga~iIGINnRnL-~Tf-~vD~~~~~~La  205 (695)
T PRK13802        133 GADLVLLIVAALDDAQLKHLLDLAHELNMTVLVETHTR---EEIERARKA--GAKVIGINARNL-KNL-KVDVNKYNELA  205 (695)
T ss_pred             CCCHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHC--CCCEEEEECCCC-CCC-EECHHHHHHHH
T ss_conf             87889999986699999999999998699179997899---999999847--999899878988-642-28779999998


Q ss_pred             HHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf             54313865269815899889999996799899974266378998999999999
Q gi|254780975|r  163 ALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND  215 (224)
Q Consensus       163 ~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~  215 (224)
                      .++|+.-+.+.--|==+.+.+..+..+|||.+.+|-++..++||..+...+..
T Consensus       206 p~iP~~~v~VAESGI~~~~Dv~~~a~aGadAvLVGEalvta~dP~~~v~~l~~  258 (695)
T PRK13802        206 ADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADNHELAVERLVK  258 (695)
T ss_pred             HHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCHHHHHHHHHH
T ss_conf             46899857995689999899999997799999978034158987999999997


No 181
>PRK10128 putative aldolase; Provisional
Probab=97.24  E-value=0.02  Score=35.83  Aligned_cols=181  Identities=14%  Similarity=0.197  Sum_probs=111.8

Q ss_pred             HHHHHHCCCCEEEEEEECCEECCCCCCCHH----HHHHHHHCCCCEEEEEEEEEECC-HHHHHHCCCCCC-EEEEECCCC
Q ss_conf             999996599899997342634584341789----99986412564168567885120-336764047760-799970664
Q gi|254780975|r   23 ISNITKAGAKQIHFDVMDGCFVPNISFGAD----VIRSLRSYSDSVFDCHLMISSID-SHINIIADAGCD-IITFHPESS   96 (224)
Q Consensus        23 i~~l~~~~~d~iHiDImDg~fvpn~~~~~~----~i~~i~~~t~~~~dvHLMv~~P~-~~i~~~~~~g~d-~i~~H~E~~   96 (224)
                      .+.+-..|+||+-+|.--|.|      +.+    .+..++.....|+ |-  +-.+. .++....+.|++ .+.-|.++.
T Consensus        15 aEi~a~~G~D~v~iD~EHg~~------~~~~~~~~~~a~~~~~~~pi-VR--v~~~~~~~i~r~LD~Ga~GiivP~V~ta   85 (250)
T PRK10128         15 AEIAATSGYDWLLIDGEHAPN------TIQDLYHQLQAVAPYASQPV-IR--PVEGSKALIKQVLDIGAQTLLIPMVDTA   85 (250)
T ss_pred             HHHHHCCCCCEEEEECCCCCC------CHHHHHHHHHHHHHCCCCEE-EE--CCCCCHHHHHHHHHCCCCEEEECCCCCH
T ss_conf             999980898999981778999------99999999999986599719-98--5899988999998378987785474869


Q ss_pred             CCHHHHHHHHHH-----CCCEEE----------------------EEEECCC--CHHHHHHHHH--HCCEEEEE----EE
Q ss_conf             215899986776-----498259----------------------9852333--4478998862--01402899----83
Q gi|254780975|r   97 PHIRRSLRTIHA-----MGKKTG----------------------VAINPET--PVAILEDVID--EIDMILIM----TV  141 (224)
Q Consensus        97 ~~~~~~i~~i~~-----~g~k~G----------------------iai~p~T--~~~~i~~~l~--~~D~vliM----~V  141 (224)
                      ++..+.++.+|-     .|.-.+                      +...-+|  -++.++.++.  -+|.+.+=    +.
T Consensus        86 e~A~~~V~~~kYpP~G~Rg~g~~~~r~~~~g~~~~y~~~~n~~~~vi~qIEt~~av~nldeI~av~GvD~~fiGp~DLs~  165 (250)
T PRK10128         86 EQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSA  165 (250)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCEEEECHHHHHH
T ss_conf             99999999851699999988864232244577479999986413665441558999879998588998889988488998


Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHH--HHCCCCHHHHHHHHHHHH
Q ss_conf             0677653322013577899865431386526981589988999999679989997426--637899899999999999
Q gi|254780975|r  142 NPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSS--FFNQKGEISYAKRLNDLK  217 (224)
Q Consensus       142 ~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsa--if~~~d~~~~~~~l~~l~  217 (224)
                      .-|+-||...|...+-++++.+...+.+....+= ..+.+.+..+.+.|++.++.|+=  ++.+    .....+..+|
T Consensus       166 slG~pg~~~~p~v~~ai~~v~~~~~~~gk~~G~~-~~~~~~a~~~~~~G~~~v~~g~D~~ll~~----a~~~~l~~~r  238 (250)
T PRK10128        166 SLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFL-AVAPDMAQQCLAWGANFVAVGVDTMLYSD----ALDQRLAMFK  238 (250)
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-CCCHHHHHHHHHCCCCEEEEHHHHHHHHH----HHHHHHHHHH
T ss_conf             6599999998699999999999999869976883-79999999999769999986579999999----9999999985


No 182
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=97.24  E-value=0.02  Score=35.80  Aligned_cols=194  Identities=15%  Similarity=0.265  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCEECCCC-CCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECC
Q ss_conf             89999999999965998999973426345843-41789999864125641685678851203367640477607999706
Q gi|254780975|r   16 FSRLGEEISNITKAGAKQIHFDVMDGCFVPNI-SFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPE   94 (224)
Q Consensus        16 ~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~-~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E   94 (224)
                      +=++.+....+.++|+|.+-+-.=     |.- -..++.+..|++..+.|+.+-  ...-..+++...+..++.+|+=+|
T Consensus        20 ~Pd~~~~a~~~~~~GadgITvHlR-----~DrRHI~~~Dv~~l~~~~~~~lNlE--~a~~~emi~ia~~~kP~~vtLVPe   92 (234)
T cd00003          20 YPDPVEAALLAEKAGADGITVHLR-----EDRRHIQDRDVRLLRELVRTELNLE--MAPTEEMLEIALEVKPHQVTLVPE   92 (234)
T ss_pred             CCCHHHHHHHHHHCCCCEEEECCC-----CCCCCCCCHHHHHHHHHCCCCEEEC--CCCCHHHHHHHHHCCCCEEEECCC
T ss_conf             999999999999839985895248-----8766675457999998658554661--279389999999849987898788


Q ss_pred             CC---------------CCHHHHHHHHHHCCCEEEEEEECCCC-HHHHHHHHHHCCEEEEEEEE-CCCCCCCCCCHHHHH
Q ss_conf             64---------------21589998677649825998523334-47899886201402899830-677653322013577
Q gi|254780975|r   95 SS---------------PHIRRSLRTIHAMGKKTGVAINPETP-VAILEDVIDEIDMILIMTVN-PGFGGQQLIESTIPK  157 (224)
Q Consensus        95 ~~---------------~~~~~~i~~i~~~g~k~Giai~p~T~-~~~i~~~l~~~D~vliM~V~-PG~~Gq~f~~~~l~k  157 (224)
                      .-               +.+..+++.+++.|+++.+=+.|+.. ++....+  -+|.|=+-|-. .-..+++-....++|
T Consensus        93 ~r~elTTegGld~~~~~~~L~~~i~~lk~~~IrvSLFIDPd~~qi~~a~~~--Gad~VElhTG~Ya~a~~~~~~~~el~~  170 (234)
T cd00003          93 KREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEV--GADRVELHTGPYANAYDKAEREAELER  170 (234)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH--CCCEEEEECHHHHHHCCCHHHHHHHHH
T ss_conf             878641788926654788999999999865982799727987899999984--939999824787863481039999999


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHC-CCCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             89986543138652698158998899999967-99899974266378998999999999999
Q gi|254780975|r  158 IRQAKALIGKRSISLEVDGGVTSRNIKSLVQA-GADLLVVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       158 I~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~-Gad~~V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
                      +++..++-.+.++.+-+--|.|.+|++.+.+. +.+-+-.|-+|....-.....+.++++++
T Consensus       171 i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~ip~i~EvnIGHaiI~esl~~Gl~~aV~~~~~  232 (234)
T cd00003         171 IAKAAKLARELGLGVNAGHGLNYENVKPIAKIPGIAELNIGHAIISRALFVGLEEAVREMKD  232 (234)
T ss_pred             HHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999985987854789887679998558997288557999999999749999999997


No 183
>PRK06256 biotin synthase; Validated
Probab=97.23  E-value=0.021  Score=35.73  Aligned_cols=188  Identities=16%  Similarity=0.191  Sum_probs=108.7

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEE
Q ss_conf             88999999999996599899997342634584341--7899998641256416856788512033676404776079997
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFH   92 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H   92 (224)
                      +.-.+.++.+...+.|+..+++= .=|+--+...|  -.+.++.||+.+.+.+.+-+=.- ...-+..+.++|+|++.-.
T Consensus        91 ~~eeI~~~a~~a~~~G~~~~~lv-tsg~~~~~~~~e~v~~~i~~Ik~~~~l~i~~slG~l-~~e~~~~LkeAGvd~y~~n  168 (325)
T PRK06256         91 DIEEIVEAAKEAIENGAGRFCIV-ASGRGPSGREVDQVIEAVKAIKEETDLEICACLGLL-TEEQAERLKEAGVDRYNHN  168 (325)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEE-EECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CHHHHHHHHHCCCCEECCC
T ss_conf             99999999999998699889998-604589767899999999998622893688734889-9999999998699888666


Q ss_pred             CCCCCC-------------HHHHHHHHHHCCCEE--EEEEECCCCHHHHHHHHHH-----CCEEEEEEEE--CC--CCCC
Q ss_conf             066421-------------589998677649825--9985233344789988620-----1402899830--67--7653
Q gi|254780975|r   93 PESSPH-------------IRRSLRTIHAMGKKT--GVAINPETPVAILEDVIDE-----IDMILIMTVN--PG--FGGQ  148 (224)
Q Consensus        93 ~E~~~~-------------~~~~i~~i~~~g~k~--Giai~p~T~~~~i~~~l~~-----~D~vliM~V~--PG--~~Gq  148 (224)
                      .|+...             -.++++.+++.|..+  |.-+..+-..+.....+-.     +|.|=++--.  ||  +.++
T Consensus       169 lETs~~~f~~i~~tht~~~Rl~ti~~a~~aGi~vcsG~i~GlGEt~edrve~l~~Lr~l~~~sipin~l~P~~gTpl~~~  248 (325)
T PRK06256        169 LETSRSYFPNVVTTHTYEDRVDTCEMVKAAGIEPCSGGIIGMGETLEDRAEHAFFLKELDADSIPINFLNPIKGTPLEDL  248 (325)
T ss_pred             CCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCCCCC
T ss_conf             44068763886899889999999999998599646643766899989999999999719998895467010699866889


Q ss_pred             CC-CC-HHHHHHHHHHHHHHCCCCEEEEECC--CCHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf             32-20-1357789986543138652698158--99889999996799899974266378998
Q gi|254780975|r  149 QL-IE-STIPKIRQAKALIGKRSISLEVDGG--VTSRNIKSLVQAGADLLVVGSSFFNQKGE  206 (224)
Q Consensus       149 ~f-~~-~~l~kI~~l~~~~~~~~~~I~vDGG--vn~~~i~~l~~~Gad~~V~Gsaif~~~d~  206 (224)
                      +. .+ ..+.-|.-+|=+.|+..  |-+-||  ++......+.-+||+.+..|.++=..-.+
T Consensus       249 ~~l~~~e~lr~iAi~Rl~~P~~~--Ir~agGr~~~~~~~~~~~~~gan~~~~G~~lTt~g~~  308 (325)
T PRK06256        249 PELTPLECLKTIAIFRLINPDKE--IRIAGGREIALRSLQPLALKGANSIFVGNYLTTLGQP  308 (325)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCCCCHHHHHHHHHHCHHHEECCCCCCCCCC
T ss_conf             99899999999999999789954--8970785522556799998617351466653789978


No 184
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=97.20  E-value=0.022  Score=35.53  Aligned_cols=172  Identities=15%  Similarity=0.111  Sum_probs=106.8

Q ss_pred             HHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECC-HHHHHHCCCCCCEE-EEECCCCCCHH
Q ss_conf             99999659989999734263458434178999986412564168567885120-33676404776079-99706642158
Q gi|254780975|r   23 ISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSID-SHINIIADAGCDII-TFHPESSPHIR  100 (224)
Q Consensus        23 i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~-~~i~~~~~~g~d~i-~~H~E~~~~~~  100 (224)
                      .+.+-..|+||+-+|.--|.|-....  .+.+..++..-..|+ |  =|-.+. .++....++|++-| .-|.++.++..
T Consensus        26 ~Ei~a~~G~D~v~iD~EHg~~~~~~~--~~~~~a~~~~g~~~i-V--Rvp~~~~~~i~~~LD~Ga~GiivP~V~t~eea~  100 (249)
T TIGR03239        26 TEVLGLAGFDWLLLDGEHAPNDVLTF--IPQLMALKGSASAPV-V--RPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAE  100 (249)
T ss_pred             HHHHHCCCCCEEEEECCCCCCCHHHH--HHHHHHHHHCCCCCE-E--ECCCCCHHHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf             99997189699998104489999999--999999984699848-9--799998789999970899878951745599999


Q ss_pred             HHHHHHHH-----CC---------------------CEEEEEEECCCC--HHHHHHHHH--HCCEEEEE----EEECCCC
Q ss_conf             99986776-----49---------------------825998523334--478998862--01402899----8306776
Q gi|254780975|r  101 RSLRTIHA-----MG---------------------KKTGVAINPETP--VAILEDVID--EIDMILIM----TVNPGFG  146 (224)
Q Consensus       101 ~~i~~i~~-----~g---------------------~k~Giai~p~T~--~~~i~~~l~--~~D~vliM----~V~PG~~  146 (224)
                      ++++.+|-     .|                     ..+-+.+.-+|.  ++.++.++.  -+|.|.+=    +..-|+-
T Consensus       101 ~~v~a~kypP~G~Rg~~~~~r~~~yg~~~~y~~~~n~~~~vi~qIEt~~av~nldeI~av~GvD~ifiGP~DLs~slG~~  180 (249)
T TIGR03239       101 RAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHL  180 (249)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCC
T ss_conf             99997344999998887663211247706999998644278999658899987999967899888998848999876999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf             533220135778998654313865269815899889999996799899974266
Q gi|254780975|r  147 GQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSF  200 (224)
Q Consensus       147 Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai  200 (224)
                      ||.-.|.+.+.++++.+...+.+....+= .-+.+.++.+.+.|++.++.||=+
T Consensus       181 g~~~~p~v~~ai~~v~~~~~~~gk~~Gi~-~~~~~~~~~~~~~G~~~i~~g~D~  233 (249)
T TIGR03239       181 GNPNHPDVQKAIRHIFDRAAAHGKPCGIL-APVEADARRYLEWGATFVAVGSDL  233 (249)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCEEEE-CCCHHHHHHHHHCCCCEEEEHHHH
T ss_conf             99999799999999999999859966982-799999999998699899966899


No 185
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.11  E-value=0.006  Score=39.17  Aligned_cols=92  Identities=23%  Similarity=0.473  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHC-CCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             58999867764-9825998523334478998862-014028998306776533220135778998654313865269815
Q gi|254780975|r   99 IRRSLRTIHAM-GKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDG  176 (224)
Q Consensus        99 ~~~~i~~i~~~-g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG  176 (224)
                      +.+.+...|+. ..+.=+.+-.+ .++.+...++ .+|.||+         -.|   ..+.+++.-++.+. ...+++-|
T Consensus       179 ~~~~i~~~r~~~~~~~~IeVEv~-~l~~~~~a~~~g~D~ImL---------Dnm---s~~~i~~av~~i~~-~~~lEaSG  244 (281)
T PRK06543        179 LTEALRHVRAQLGHTTHVEVEVD-RLDQIEPVLAAGVDTIML---------DNF---TLDQLREGVELIDG-RAIVEASG  244 (281)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEEC-CHHHHHHHHHCCCCEEEE---------CCC---CHHHHHHHHHHHCC-CEEEEEEC
T ss_conf             99999999975899870999966-788799999749999997---------798---99999999997579-37999988


Q ss_pred             CCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             8998899999967998999742663789
Q gi|254780975|r  177 GVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       177 Gvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      |||.+|+..+.+.|+|.++.|+-..+.+
T Consensus       245 gI~~~ni~~yA~tGVD~IS~galt~s~~  272 (281)
T PRK06543        245 NVSLNTVPAIASTGVDVISVGALTHSVR  272 (281)
T ss_pred             CCCHHHHHHHHHCCCCEEECCHHCCCCC
T ss_conf             9999999999973999998382006997


No 186
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.08  E-value=0.0052  Score=39.55  Aligned_cols=79  Identities=15%  Similarity=0.368  Sum_probs=38.2

Q ss_pred             CCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECH
Q ss_conf             34478998862-014028998306776533220135778998654313865269815899-8899999967998999742
Q gi|254780975|r  121 TPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGS  198 (224)
Q Consensus       121 T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gs  198 (224)
                      .|++....+.+ ...++.+.-.+--|.|++-+...+.+|.+      ..+.++||-|||| .+.+..+.++|++++++||
T Consensus        32 ~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~------~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt  105 (241)
T COG0106          32 DPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILE------ATDVPVQVGGGIRSLEDVEALLDAGVARVIIGT  105 (241)
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHH------HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf             98999999998099589886266321587554999999998------579977840876789999999987998899803


Q ss_pred             HHHCCCC
Q ss_conf             6637899
Q gi|254780975|r  199 SFFNQKG  205 (224)
Q Consensus       199 aif~~~d  205 (224)
                      +-+++++
T Consensus       106 ~av~~p~  112 (241)
T COG0106         106 AAVKNPD  112 (241)
T ss_pred             CEECCHH
T ss_conf             1216999


No 187
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase; InterPro: IPR014732   Orotidine 5'-phosphate decarboxylase (OMPdecase) (4.1.1.23 from EC) ,  catalyzes the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional proteins.   Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme..
Probab=97.00  E-value=0.0036  Score=40.55  Aligned_cols=194  Identities=16%  Similarity=0.245  Sum_probs=110.9

Q ss_pred             HHCCCHHHHHHHHHHHHHCC--CC--E--EEEEEECCEECCCCCCC-HHHHHHHHHCC---CCEEEEEEEEEE-CC---H
Q ss_conf             63258899999999999659--98--9--99973426345843417-89999864125---641685678851-20---3
Q gi|254780975|r   11 ILAADFSRLGEEISNITKAG--AK--Q--IHFDVMDGCFVPNISFG-ADVIRSLRSYS---DSVFDCHLMISS-ID---S   76 (224)
Q Consensus        11 il~~d~~~l~~~i~~l~~~~--~d--~--iHiDImDg~fvpn~~~~-~~~i~~i~~~t---~~~~dvHLMv~~-P~---~   76 (224)
                      +++.|...-++.++.+++.+  ++  +  +|+|+.+       ..+ ..++++|++..   |+++=..+=.-| |.   .
T Consensus         2 ~vALD~~~~~e~l~~a~~~~~~~~v~~~Kvg~~l~~-------~~~~~~~~~~L~~~~~KHNf~if~D~Kf~DIpnTv~~   74 (233)
T TIGR01740         2 IVALDVTTKEEALKLADSLGPEIDVLVIKVGIDLLL-------SGGYEKIIEELAKLNKKHNFLIFLDLKFADIPNTVKL   74 (233)
T ss_pred             EEECCCCCHHHHHHHHHHHCCEEEEEEEECCHHHHH-------CCCCHHHHHHHHHHHCCCCCEEEECCEECCCCHHHHH
T ss_conf             686238998999999975046277777751423333-------2784889999999745688203212031366156899


Q ss_pred             HHHH---HCCCCCCEEEEECCCCCC-HHHHHHHHHHCCC-EEE-EEEECCCCHHH---HHHHHHH-CCEEEEEEEECCCC
Q ss_conf             3676---404776079997066421-5899986776498-259-98523334478---9988620-14028998306776
Q gi|254780975|r   77 HINI---IADAGCDIITFHPESSPH-IRRSLRTIHAMGK-KTG-VAINPETPVAI---LEDVIDE-IDMILIMTVNPGFG  146 (224)
Q Consensus        77 ~i~~---~~~~g~d~i~~H~E~~~~-~~~~i~~i~~~g~-k~G-iai~p~T~~~~---i~~~l~~-~D~vliM~V~PG~~  146 (224)
                      .++.   +.+.|++++++|.=+-.. +++..+..++.+. +.+ +++.-=|+...   -..|.++ .+.++=|+..-+..
T Consensus        75 ~~~~G~y~~~~~~~~~~vH~~~G~~~~~~~~~~a~~~~~~~~~ll~V~~ltS~g~~d~~~~~~~~~~~~~~~~A~~~~~~  154 (233)
T TIGR01740        75 QYESGVYKIKQGADMVNVHGVAGKESVEAAKEAASEFSTSGRGLLAVTELTSKGSEDLELEYGEDTEEKVVEIAKEAKEF  154 (233)
T ss_pred             HHHCCCCEEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             97508641217745899720150789999998702566668737999875179813389998888999999998616665


Q ss_pred             CCCCCCHHHHHHHHHHHHHHC---------CCCEEE--EECC--CCHHHHHHHHHCCCCEEEECHHHHC-CCCHHHHHHH
Q ss_conf             533220135778998654313---------865269--8158--9988999999679989997426637-8998999999
Q gi|254780975|r  147 GQQLIESTIPKIRQAKALIGK---------RSISLE--VDGG--VTSRNIKSLVQAGADLLVVGSSFFN-QKGEISYAKR  212 (224)
Q Consensus       147 Gq~f~~~~l~kI~~l~~~~~~---------~~~~I~--vDGG--vn~~~i~~l~~~Gad~~V~Gsaif~-~~d~~~~~~~  212 (224)
                      |   ......+..+.++.+..         .++...  -|++  -..-|...+.+.|+|.+|+|..||. ++||.+++++
T Consensus       155 G---l~G~~~~~~~~~~~~~~~G~~~~~~tPGir~~~~g~~~dQ~~~~~~~~a~~~g~D~iiVGR~Iy~~~~dP~~aa~~  231 (233)
T TIGR01740       155 G---LIGPVCSAEEAKEIRKITGSDFLILTPGIRLASKGDADDQQRVVTLEDAIEAGADVIIVGRGIYKKAEDPVEAAKK  231 (233)
T ss_pred             C---CCCEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCHHCCCCCHHHHHHH
T ss_conf             3---3210114677865632058870786077148988878886443778999860499899878210138786899986


Q ss_pred             HH
Q ss_conf             99
Q gi|254780975|r  213 LN  214 (224)
Q Consensus       213 l~  214 (224)
                      ++
T Consensus       232 i~  233 (233)
T TIGR01740       232 IR  233 (233)
T ss_pred             CC
T ss_conf             09


No 188
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=97.00  E-value=0.034  Score=34.32  Aligned_cols=171  Identities=15%  Similarity=0.138  Sum_probs=105.1

Q ss_pred             HHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEC-CHHHHHHCCCCCCE-EEEECCCCCCHH
Q ss_conf             9999965998999973426345843417899998641256416856788512-03367640477607-999706642158
Q gi|254780975|r   23 ISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSI-DSHINIIADAGCDI-ITFHPESSPHIR  100 (224)
Q Consensus        23 i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P-~~~i~~~~~~g~d~-i~~H~E~~~~~~  100 (224)
                      .+.+-..|+||+-+|.--|.|-....  ...+..++.....|+ |-  |-.+ ..++....+.|++- +.-|.|+.++..
T Consensus        33 ~Ei~a~~G~Dfv~iD~EHg~~~~~~l--~~~i~a~~~~~~~~l-VR--vp~~~~~~i~r~LD~Ga~GvivP~V~s~eea~  107 (256)
T PRK10558         33 TEVLGLAGFDWLVLDGEHAPNDVSTF--IPQLMALKGSASAPV-VR--VPTNEPVIIKRLLDIGFYNFLIPFVETAEEAR  107 (256)
T ss_pred             HHHHHCCCCCEEEECCCCCCCCHHHH--HHHHHHHHHCCCCCE-EE--CCCCCHHHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf             99997289899998377899999999--999999971799748-96--78898899999970798755614769999999


Q ss_pred             HHHHHHHH-----CC---------------------CEEEEEEECCC--CHHHHHHHHH--HCCEEEEE----EEECCCC
Q ss_conf             99986776-----49---------------------82599852333--4478998862--01402899----8306776
Q gi|254780975|r  101 RSLRTIHA-----MG---------------------KKTGVAINPET--PVAILEDVID--EIDMILIM----TVNPGFG  146 (224)
Q Consensus       101 ~~i~~i~~-----~g---------------------~k~Giai~p~T--~~~~i~~~l~--~~D~vliM----~V~PG~~  146 (224)
                      +.++.+|=     .|                     -.+-+.+.-+|  -++.++.++.  -+|.|.+=    +..-|.-
T Consensus       108 ~~V~a~~YpP~G~RG~~~~~ra~~yg~~~~y~~~~n~~~~vi~qIEt~~av~nldeI~av~GvD~ifiGp~DLs~slG~~  187 (256)
T PRK10558        108 RAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHL  187 (256)
T ss_pred             HHHHHEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCC
T ss_conf             99987454899986877761343047607999997643478888536789988999967899888998858999865999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf             53322013577899865431386526981589988999999679989997426
Q gi|254780975|r  147 GQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSS  199 (224)
Q Consensus       147 Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsa  199 (224)
                      ||.-.|.+.+.++++.+...+.+....+= .-+.+.++.+.+.|++.++.||=
T Consensus       188 g~~~~pev~~ai~~v~~~~~~~gk~~G~~-~~~~~~a~~~~~~G~~~i~~g~D  239 (256)
T PRK10558        188 GNASHPDVQKAIQHIFARAKAHGKPSGIL-APVEADARRYLEWGATFVAVGSD  239 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCEEEE-CCCHHHHHHHHHCCCCEEEEHHH
T ss_conf             99999799999999999999859987993-69999999999769989997279


No 189
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.93  E-value=0.021  Score=35.64  Aligned_cols=124  Identities=17%  Similarity=0.230  Sum_probs=76.6

Q ss_pred             HHHHCC--CCCCEEEEECCCC--CCHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCC------
Q ss_conf             676404--7760799970664--2158999867764982-5998523334478998862-01402899830677------
Q gi|254780975|r   78 INIIAD--AGCDIITFHPESS--PHIRRSLRTIHAMGKK-TGVAINPETPVAILEDVID-EIDMILIMTVNPGF------  145 (224)
Q Consensus        78 i~~~~~--~g~d~i~~H~E~~--~~~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~------  145 (224)
                      +..+.+  .+++.+++-.-+.  ....++++++|+..-. +-+|=|-.|+ +..+.++. -+|.|.+ ++-||-      
T Consensus       113 ~~~i~~~~~~~~~i~iDvA~G~~~~~~~~i~~ik~~~~~~~iiaGNvaT~-e~~~~L~~~GaD~vkV-GIG~Gs~CtTR~  190 (347)
T PRK05096        113 TKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTG-EMVEELILSGADIVKV-GIGPGSVCTTRV  190 (347)
T ss_pred             HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHH-HHHHHHHHCCCCEEEE-CCCCCCCCCCCC
T ss_conf             99999528998989997798620889999999998789980881431239-9999999737889997-677875430452


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             -6533220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r  146 -GGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       146 -~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                       .|..  -..+.-|.+..+.....+..|..|||++ ...+.+...+|||.+-+||.+-+.++
T Consensus       191 ~tGvG--~Pq~sai~~c~~~~~~~~~~iiaDGGi~~~gDi~KAla~GAd~VM~G~~lAg~~E  250 (347)
T PRK05096        191 KTGVG--YPQLSAVIECADAAHGLGGMIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEE  250 (347)
T ss_pred             CCCCC--CHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf             23567--3037899999998605799489568847504799998738988986731037777


No 190
>pfam01180 DHO_dh Dihydroorotate dehydrogenase.
Probab=96.92  E-value=0.015  Score=36.65  Aligned_cols=154  Identities=16%  Similarity=0.241  Sum_probs=87.2

Q ss_pred             CCEEEEEEEEEECCHHHHHHCC--CCCCEEEEECCC-----------CCC-HHHHHHHHHHCCCE-EEEEEECCCC-HHH
Q ss_conf             6416856788512033676404--776079997066-----------421-58999867764982-5998523334-478
Q gi|254780975|r   62 DSVFDCHLMISSIDSHINIIAD--AGCDIITFHPES-----------SPH-IRRSLRTIHAMGKK-TGVAINPETP-VAI  125 (224)
Q Consensus        62 ~~~~dvHLMv~~P~~~i~~~~~--~g~d~i~~H~E~-----------~~~-~~~~i~~i~~~g~k-~Giai~p~T~-~~~  125 (224)
                      ++|+-+-++-.+++.|.+.+..  ..+|++.+..-+           .++ ...+.+++++.-.. +.+-+.|+++ ...
T Consensus        93 ~~~vi~si~g~~~~d~~~~~~~~~~~ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~  172 (290)
T pfam01180        93 PLGIILSKAGSTVEDYVEVARKIGPFADYLELNVSCPNTPGLRALQTDPELAAILLKVVKEVSKVPVLVKLAPDLTDIVI  172 (290)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf             85378624669999999999999743588999985368876133404298999999998750478738983898774689


Q ss_pred             HHHHHHH-----CCEEEE-------EE------------EECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-H
Q ss_conf             9988620-----140289-------98------------306776533220135778998654313865269815899-8
Q gi|254780975|r  126 LEDVIDE-----IDMILI-------MT------------VNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-S  180 (224)
Q Consensus       126 i~~~l~~-----~D~vli-------M~------------V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~  180 (224)
                      +......     ++.+..       +.            ..-|.+|.+..+.++..|+++++... ..+.|.-=|||. .
T Consensus       173 ~~~a~~~~~a~gv~gi~~~nt~~~~~~~d~~~~~~~~~~~~GGlSG~~i~~~al~~v~~~~~~~~-~~ipIig~GGI~~~  251 (290)
T pfam01180       173 IDIADVAAGEDGLTGINATNTTVRGMRIDLKTESPILANGTGGLSGPAIKPIALKVIRELYQRVG-PEIPIIGVGGIFTG  251 (290)
T ss_pred             HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCCH
T ss_conf             99999971837768999658734655555556663125678885760678999999999999708-99749998894999


Q ss_pred             HHHHHHHHCCCCEEEECHHH-HCCCCHHHHHHHHHHHHH
Q ss_conf             89999996799899974266-378998999999999999
Q gi|254780975|r  181 RNIKSLVQAGADLLVVGSSF-FNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       181 ~~i~~l~~~Gad~~V~Gsai-f~~~d~~~~~~~l~~l~~  218 (224)
                      +.+-+...+||+.+=++|++ |..+..  ..+-+++|++
T Consensus       252 ~da~e~i~aGA~~VQv~Tal~~~Gp~~--i~~i~~~L~~  288 (290)
T pfam01180       252 EDALEKILAGASAVQIGTALIFGGPFI--FPKIIDELPE  288 (290)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHCCCHH--HHHHHHHHHH
T ss_conf             999999983997999858998419179--9999999997


No 191
>PRK08649 inositol-5-monophosphate dehydrogenase; Validated
Probab=96.87  E-value=0.021  Score=35.62  Aligned_cols=130  Identities=17%  Similarity=0.222  Sum_probs=81.6

Q ss_pred             ECCHHHHHHCCCCCCEEEEE-----CCC---CCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH-CCEEEEEEEEC
Q ss_conf             12033676404776079997-----066---4215899986776498259985233344789988620-14028998306
Q gi|254780975|r   73 SIDSHINIIADAGCDIITFH-----PES---SPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDE-IDMILIMTVNP  143 (224)
Q Consensus        73 ~P~~~i~~~~~~g~d~i~~H-----~E~---~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~-~D~vliM~V~P  143 (224)
                      +-.+..+.+.++|+|.++++     .++   .....+..+++++.... -+|=|-.|. +-.+.+++. +|.|-+ ++-|
T Consensus       141 ~~~~~~~~Lv~aGvDvlvId~~vvd~aH~~~~~~~l~~~~~~~~~~v~-vIaGNVaT~-e~a~~Li~aGADaVKV-GIGp  217 (368)
T PRK08649        141 NAQKLGPTVVEAGADLFVIQGTVVSAEHVSEGGEPLNLKEFIYELDVP-VVVGGCVTY-TTALHLMRTGAAGVLV-GIGP  217 (368)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEEEEEEHHHCCCCHHHHHHHHHCCCCCC-EEEECCCCH-HHHHHHHHCCCCEEEE-CCCC
T ss_conf             389999999974998899841475402220320356566431237987-897344699-9999999779989994-5668


Q ss_pred             CC---------CCCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             77---------6533220135778998654313---865269815899-88999999679989997426637899
Q gi|254780975|r  144 GF---------GGQQLIESTIPKIRQAKALIGK---RSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       144 G~---------~Gq~f~~~~l~kI~~l~~~~~~---~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      |-         -|-|....+.+=.+..|++.++   ++++|..||||+ .-.+.+.+.+|||.+-+||-+-+.+.
T Consensus       218 GSICTTRvVaGvGvPQltAI~~~a~a~~~y~~~~~g~~VpvIADGGIr~sGDi~KAlaaGA~~VMlGsllAGt~E  292 (368)
T PRK08649        218 GAACTSRGVLGIGVPMATAIADCAAARRDYLDETGGRYVHVIADGGIVTSGDICKAIACGADAVMLGSPLARAAE  292 (368)
T ss_pred             CCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf             877566340125721699999999998865565268546489568858641899998728998987731047666


No 192
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.87  E-value=0.044  Score=33.64  Aligned_cols=146  Identities=14%  Similarity=0.248  Sum_probs=108.5

Q ss_pred             CHHHHHHHHHC--CCCEEEEEEEEEECC----HHHH-HHCCCCCCEEEEECCCC----------CCHHHHHHHHHHCCCE
Q ss_conf             78999986412--564168567885120----3367-64047760799970664----------2158999867764982
Q gi|254780975|r   50 GADVIRSLRSY--SDSVFDCHLMISSID----SHIN-IIADAGCDIITFHPESS----------PHIRRSLRTIHAMGKK  112 (224)
Q Consensus        50 ~~~~i~~i~~~--t~~~~dvHLMv~~P~----~~i~-~~~~~g~d~i~~H~E~~----------~~~~~~i~~i~~~g~k  112 (224)
                      +|+.|+.|..|  +++.++.-+- -||-    .++. .+...|-|+|.|.-++-          +-+.+.....+++|..
T Consensus       232 pp~EIe~I~~yll~ek~l~tfiK-~NpTlLGy~~~r~~ld~~G~dyi~~~~~~F~~Dlq~~~a~~ml~rL~~la~~~~l~  310 (1032)
T PRK09853        232 PPHEIEAICRYMLEEKGLNTFVK-LNPTLLGYKRVREILDVCGFDYIGLKEESFDHDLQLTDAVEMLERLMALAKEKSLG  310 (1032)
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCHHHHHHHHHHCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCE
T ss_conf             98999999999985057766885-17420058999999986098437417565333343567999999999999972965


Q ss_pred             EEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCC
Q ss_conf             59985233344789988620140289983067765332201357789986543138652698158998899999967998
Q gi|254780975|r  113 TGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGAD  192 (224)
Q Consensus       113 ~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad  192 (224)
                      +|+-|...-|+..-..-||.-.  +-|      ||.++-|=+++-..++++-++. .+.|.--||....|+.++.++|..
T Consensus       311 fGvKltNT~~v~~~~~~lP~~e--MYm------SGr~L~plsi~~a~~l~~~f~g-~l~iSysgGad~~Ni~~i~~~gi~  381 (1032)
T PRK09853        311 FGVKLTNTLGTINNKGELPGEE--MYM------SGRALFPLSINLAAKLSRAFDG-KLPISYSGGASQFNIRDIFDTGIR  381 (1032)
T ss_pred             EEEEEECCEEEEECCCCCCCCC--CCC------CCCCCCHHHHHHHHHHHHHHCC-CCCEEEECCCCHHHHHHHHHCCCC
T ss_conf             6588704300561268799633--203------5885620158999999997099-751366467542259999972985


Q ss_pred             EEEECHHHHCCCC
Q ss_conf             9997426637899
Q gi|254780975|r  193 LLVVGSSFFNQKG  205 (224)
Q Consensus       193 ~~V~Gsaif~~~d  205 (224)
                      -+.+-|.|.+-..
T Consensus       382 piT~at~lLkpgG  394 (1032)
T PRK09853        382 PITMATDLLKPGG  394 (1032)
T ss_pred             EEEEEECCCCCCC
T ss_conf             0033102168762


No 193
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990    Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase     IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP .  Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH     IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=96.86  E-value=0.034  Score=34.35  Aligned_cols=181  Identities=22%  Similarity=0.323  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE-----EEEEEEE---C--C--HHHHHHCCC
Q ss_conf             99999999999659989999734263458434178999986412564168-----5678851---2--0--336764047
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD-----CHLMISS---I--D--SHINIIADA   84 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d-----vHLMv~~---P--~--~~i~~~~~~   84 (224)
                      -++++..+.|.+..++.|=+==-+++-|.=+|.  +.+..-+++++--.|     =-|||-=   |  .  +=+..+.++
T Consensus       173 i~~e~A~~~L~~~r~ekLpvVd~~~~lVgLiT~--~Di~~~~~~P~A~kd~vG~~GrL~VgAAvg~r~~D~~R~~~L~~A  250 (476)
T TIGR01302       173 IDLEEALKVLHKHRIEKLPVVDKDGELVGLITV--KDIVKRREFPHASKDTVGENGRLIVGAAVGTREDDLERAEALVEA  250 (476)
T ss_pred             CCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEH--HHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHC
T ss_conf             778999999886086504788278988999864--478898638887788748886089998846898618999999965


Q ss_pred             CCCEEEEECCCCC--CHHHHHHHHHHCCCEEEEEE-ECCCCHHHHHHHHH-HCCEEEEEEEECC---------CCCCCCC
Q ss_conf             7607999706642--15899986776498259985-23334478998862-0140289983067---------7653322
Q gi|254780975|r   85 GCDIITFHPESSP--HIRRSLRTIHAMGKKTGVAI-NPETPVAILEDVID-EIDMILIMTVNPG---------FGGQQLI  151 (224)
Q Consensus        85 g~d~i~~H~E~~~--~~~~~i~~i~~~g~k~Giai-~p~T~~~~i~~~l~-~~D~vliM~V~PG---------~~Gq~f~  151 (224)
                      |+|.|++=.=.-+  ...+.++|+|+.....=+.- |=.|. +.-+.+++ .+|-|=| ++=||         -.|-|-.
T Consensus       251 GvDv~viDsshGhs~~vl~~ik~~k~~Yp~~~iiaGNVaT~-~~a~~LI~AgADg~rV-GiGpGSICTTr~V~gVGvPQ~  328 (476)
T TIGR01302       251 GVDVIVIDSSHGHSIYVLDSIKKIKKTYPDLDIIAGNVATA-EQAKALIDAGADGLRV-GIGPGSICTTRIVAGVGVPQI  328 (476)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCH-HHHHHHHHCCCCEEEE-CCCCCCCCEEEEEEECCCHHH
T ss_conf             96589981665453789999999986388057994344117-8898898528887898-368898110015651276268


Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             0135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r  152 ESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       152 ~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                       .+.-++.+   ...+.++.+..||||+ .-+|.+.+.+|||.+=+||.|-+.+.
T Consensus       329 -TAv~~Va~---~A~~~Gi~VIADGGIr~SGDivKAlAaGA~aVMlGslLAGT~E  379 (476)
T TIGR01302       329 -TAVYDVAE---YAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTE  379 (476)
T ss_pred             -HHHHHHHH---HHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEHHCCCCCCCCC
T ss_conf             -89999999---9972799099837756255899999816772202342101633


No 194
>PRK00957 methionine synthase; Provisional
Probab=96.81  E-value=0.048  Score=33.37  Aligned_cols=91  Identities=23%  Similarity=0.295  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCEECCCCCCCH-------HHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf             999999999659989999734263458434178-------9999864125641685678851203367640477607999
Q gi|254780975|r   19 LGEEISNITKAGAKQIHFDVMDGCFVPNISFGA-------DVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITF   91 (224)
Q Consensus        19 l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~-------~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~   91 (224)
                      +.++++.+.++|+++|++|=      |.++.++       +.++.+-+--+.++-+|+. -+-...++.+.+..+|.+.+
T Consensus       148 l~~Ei~~l~~aG~~~IQiDE------P~l~~~~~~~~~~~~~i~~~~~~~~~~~~~HiC-g~y~~i~~~l~~~~vd~~~l  220 (307)
T PRK00957        148 LAKEALALQKAGAAMIQIDE------PILSTGAYDLEVAKKAIDIIAKGLNIPVAMHVC-GDVGNIFDDLLKFNVDILDH  220 (307)
T ss_pred             HHHHHHHHHHCCCCEEEECC------HHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEC-CCHHHHHHHHHHCCCCEEEE
T ss_conf             99999999974998899675------577638013899999999974146745999966-77377788998589998999


Q ss_pred             ECCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf             7066421589998677649825998
Q gi|254780975|r   92 HPESSPHIRRSLRTIHAMGKKTGVA  116 (224)
Q Consensus        92 H~E~~~~~~~~i~~i~~~g~k~Gia  116 (224)
                      -+....+....+......+.++|+.
T Consensus       221 E~a~~~~~l~~l~~~~~~~k~i~lG  245 (307)
T PRK00957        221 EFAGNKENLEVLEEKDLIGKKIGFG  245 (307)
T ss_pred             EECCCCCHHHHHHHHCCCCCEEEEE
T ss_conf             7079944388887640589859986


No 195
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.81  E-value=0.045  Score=33.59  Aligned_cols=155  Identities=17%  Similarity=0.278  Sum_probs=112.2

Q ss_pred             CEECCCCCC------CHHHHHHHHHC--CCCEEEEEEEEEECC----HHHH-HHCCCCCCEEEEECCCC----------C
Q ss_conf             634584341------78999986412--564168567885120----3367-64047760799970664----------2
Q gi|254780975|r   41 GCFVPNISF------GADVIRSLRSY--SDSVFDCHLMISSID----SHIN-IIADAGCDIITFHPESS----------P   97 (224)
Q Consensus        41 g~fvpn~~~------~~~~i~~i~~~--t~~~~dvHLMv~~P~----~~i~-~~~~~g~d~i~~H~E~~----------~   97 (224)
                      .+.++.+|+      +|+.|+.|..|  +++.++.-+- -||-    .++. .+.+.|-|+|.|.-++-          +
T Consensus       204 ~~i~~~~tlST~HGcpp~EIe~I~~yl~~ek~l~t~iK-~NpTllgy~~~r~~ld~~g~~yi~~~~~~F~~Dlq~~~a~~  282 (1012)
T TIGR03315       204 PKVCHSVTLSTMHGCPPDEIEAICRYLLEEKGLHTFVK-LNPTLLGYKFVRDTMDEMGFDYIVLKEESFSHDLQYEDAVA  282 (1012)
T ss_pred             HHHCCCEEEHHCCCCCHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCHHHHHHHHHHCCCCEEECCHHHCCCCCCHHHHHH
T ss_conf             22218466410469897999999999985057766885-17420158999999986098527427665344354678999


Q ss_pred             CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             15899986776498259985233344789988620140289983067765332201357789986543138652698158
Q gi|254780975|r   98 HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGG  177 (224)
Q Consensus        98 ~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGG  177 (224)
                      -+.+.....+++|..+|+-|...-|+..-..-+|.-.  +-|      ||.++-|=+++-..++++-++. .+.|.--||
T Consensus       283 ml~rl~~la~~~~l~fGvKltNT~~v~~~~~~lP~~e--MYm------SG~~L~plsi~~a~~l~~~f~g-~l~isysgG  353 (1012)
T TIGR03315       283 MLQRLQLLAKEKGLGFGVKLTNTLPVTIAKGELPGEE--MYM------SGRALFPLSINLAAKLSREFDG-KLQISYSGG  353 (1012)
T ss_pred             HHHHHHHHHHHCCCEEEEEEECCEEEEECCCCCCCCC--CCC------CCCCCCHHHHHHHHHHHHHHCC-CCCEEEECC
T ss_conf             9999999999729656588704300561268799633--203------5885620158999999997099-751366467


Q ss_pred             CCHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             9988999999679989997426637899
Q gi|254780975|r  178 VTSRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       178 vn~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      ....|+.++.++|..-+.+-|.|.+-..
T Consensus       354 ad~~ni~~i~~~gi~piT~at~lLkpgG  381 (1012)
T TIGR03315       354 ADIFNIKEIFDTGIWPITMATTLLKPGG  381 (1012)
T ss_pred             CCHHCHHHHHHCCCCEEEEEECCCCCCC
T ss_conf             5422599999729850032102168762


No 196
>KOG4175 consensus
Probab=96.76  E-value=0.04  Score=33.86  Aligned_cols=190  Identities=19%  Similarity=0.266  Sum_probs=113.8

Q ss_pred             ECHHHHCC--CHHHHHHHHHHHHHCCCCEEEEEE------ECCEE---------CCCCCCC--HHHHHHHHHCCCCEEEE
Q ss_conf             81706325--889999999999965998999973------42634---------5843417--89999864125641685
Q gi|254780975|r    7 IVPSILAA--DFSRLGEEISNITKAGAKQIHFDV------MDGCF---------VPNISFG--ADVIRSLRSYSDSVFDC   67 (224)
Q Consensus         7 IspSil~~--d~~~l~~~i~~l~~~~~d~iHiDI------mDg~f---------vpn~~~~--~~~i~~i~~~t~~~~dv   67 (224)
                      +.+=+-|.  |...-...++-+...|.|-+.+-+      .||--         -++.+|.  .++++.-|+. ....-+
T Consensus        20 LvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~-gvt~PI   98 (268)
T KOG4175          20 LVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQ-GVTCPI   98 (268)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCCCCE
T ss_conf             8998724899678899999887527967488668567645677345566789987289689999999985046-863026


Q ss_pred             EEEEE-EC------CHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCE-EEEE
Q ss_conf             67885-12------0336764047760799970664215899986776498259985233344789988620140-2899
Q gi|254780975|r   68 HLMIS-SI------DSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDM-ILIM  139 (224)
Q Consensus        68 HLMv~-~P------~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~-vliM  139 (224)
                      -||.- ||      ++|+....++|++-..+.----+..+.+-+++|++|...-.-.-|.|+-+..+-+..-.|- |-+.
T Consensus        99 iLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvV  178 (268)
T KOG4175          99 ILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVV  178 (268)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCEEEEE
T ss_conf             62201448876407899999996587745850688689899999998649248974179980899999998632559998


Q ss_pred             EEECCCCCCC--CCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHH
Q ss_conf             8306776533--220135778998654313865269815899-8899999967998999742663
Q gi|254780975|r  140 TVNPGFGGQQ--LIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       140 ~V~PG~~Gq~--f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif  201 (224)
                      + .-|-.|-.  ..+..-+.+.++|+.-.  +-.+.|-=||+ .|+.+..... +|-+|+||.+.
T Consensus       179 S-rmG~TG~~~svn~~l~~L~qrvrk~t~--dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv  239 (268)
T KOG4175         179 S-RMGVTGTRESVNEKLQSLLQRVRKATG--DTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIV  239 (268)
T ss_pred             E-ECCCCCCHHHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCHHHHHHHHHH-CCCEEECHHHH
T ss_conf             7-145666177788889999999998648--9862675066878998765203-25447607899


No 197
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=96.76  E-value=0.051  Score=33.23  Aligned_cols=207  Identities=18%  Similarity=0.276  Sum_probs=121.4

Q ss_pred             CCCCEEEC--------HHHHCC--CHHHHHHHHHHHHHCCCCEEEEEEECCE-ECCCCCC----CHHHHHHHHH-CCCCE
Q ss_conf             97981881--------706325--8899999999999659989999734263-4584341----7899998641-25641
Q gi|254780975|r    1 MTPSIQIV--------PSILAA--DFSRLGEEISNITKAGAKQIHFDVMDGC-FVPNISF----GADVIRSLRS-YSDSV   64 (224)
Q Consensus         1 M~k~~~Is--------pSil~~--d~~~l~~~i~~l~~~~~d~iHiDImDg~-fvpn~~~----~~~~i~~i~~-~t~~~   64 (224)
                      |+|++.|.        -|+++.  ...++......+++.|  +.++++.-|- |--.+-|    +++.++.+|+ .++.+
T Consensus         1 m~k~v~i~DtTlRDg~QSl~atR~rt~d~l~ia~~~d~~G--~~slE~wGGAtfdv~~rfl~EdPwerlr~lr~~~pnt~   78 (580)
T PRK09282          1 MSKKVKITDTVLRDAHQSLLATRMRTEDMLPIAEKLDKVG--FWSLEVWGGATFDACIRFLGEDPWERLRELKKAMPNTP   78 (580)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf             9960158877643411202243379999999999998609--83898047841888888747798999999998677873


Q ss_pred             EEEEEE-------EEECCH----HHHHHCCCCCCEEEEECCCC---CCHHHHHHHHHHCCCEEEEEEECCC-CHHHHHHH
Q ss_conf             685678-------851203----36764047760799970664---2158999867764982599852333-44789988
Q gi|254780975|r   65 FDCHLM-------ISSIDS----HINIIADAGCDIITFHPESS---PHIRRSLRTIHAMGKKTGVAINPET-PVAILEDV  129 (224)
Q Consensus        65 ~dvHLM-------v~~P~~----~i~~~~~~g~d~i~~H~E~~---~~~~~~i~~i~~~g~k~Giai~p~T-~~~~i~~~  129 (224)
                      +..-|=       ...|.+    +++...++|.|++-+- .+.   .++...++.+++.|..+-.+|+-.+ |...+++|
T Consensus        79 lqmLlRG~N~vGy~~ypd~vv~~fv~~~~~~GidifRiF-D~LNdv~nm~~~~~~v~~~G~~~e~~i~yt~sP~ht~~yy  157 (580)
T PRK09282         79 LQMLLRGQNLLGYRHYADDVVEKFVEKAAENGIDVFRIF-DALNDVRNMETAIKAVKKVGAHAQGTISYTTSPVHTLETW  157 (580)
T ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE-ECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHH
T ss_conf             320111133256445886899999999997699789974-0123257789999999845987999999715887638999


Q ss_pred             HHHCCEEE-----EEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE----EECCCCHHHHHHHHHCCCCEEEEC-HH
Q ss_conf             62014028-----998306776533220135778998654313865269----815899889999996799899974-26
Q gi|254780975|r  130 IDEIDMIL-----IMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLE----VDGGVTSRNIKSLVQAGADLLVVG-SS  199 (224)
Q Consensus       130 l~~~D~vl-----iM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~----vDGGvn~~~i~~l~~~Gad~~V~G-sa  199 (224)
                      ++....+.     .+++. --+|---=..+.+.|+.+|+.+   ++.|+    -..|...-+.-...++|||++=.. |+
T Consensus       158 ~~~a~~l~~~G~d~i~iK-DmaGll~P~~a~~LV~alk~~~---~lpI~~HtH~t~G~~~a~~l~A~eAGvdivD~a~~~  233 (580)
T PRK09282        158 VDLAKQLEEMGCDSICIK-DMAGLLTPYAAYELVSALKKEV---DLPVHLHCHATTGLATMTYLKAVEAGVDILDTAISS  233 (580)
T ss_pred             HHHHHHHHHCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCC
T ss_conf             999999997499889972-6655789899999999999861---981699824776479999999998488867001355


Q ss_pred             ---HHCCCCHHHHHHHHH
Q ss_conf             ---637899899999999
Q gi|254780975|r  200 ---FFNQKGEISYAKRLN  214 (224)
Q Consensus       200 ---if~~~d~~~~~~~l~  214 (224)
                         .-.++........++
T Consensus       234 ~s~gtsqP~~~~~v~~l~  251 (580)
T PRK09282        234 MSMGTSHPPTETVVAALQ  251 (580)
T ss_pred             CCCCCCCCCHHHHHHHHH
T ss_conf             348878987999999873


No 198
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=96.76  E-value=0.05  Score=33.29  Aligned_cols=194  Identities=21%  Similarity=0.313  Sum_probs=120.3

Q ss_pred             HCCCHHHHHHHHHHHHHCCCCEEEEEEE------------------CCEECCCCCCC----HHHHHHHHHC--CCCEEEE
Q ss_conf             3258899999999999659989999734------------------26345843417----8999986412--5641685
Q gi|254780975|r   12 LAADFSRLGEEISNITKAGAKQIHFDVM------------------DGCFVPNISFG----ADVIRSLRSY--SDSVFDC   67 (224)
Q Consensus        12 l~~d~~~l~~~i~~l~~~~~d~iHiDIm------------------Dg~fvpn~~~~----~~~i~~i~~~--t~~~~dv   67 (224)
                      ++|-+-.-.+.+..+...|+.++-+-=+                  |.-.++.++|.    -.+.+.+++.  ...|+-|
T Consensus        54 lAAGfDKn~~~~~~~~~lGfGfvevGTVT~~pq~GNpkPRifRl~~~~aiiN~~GfnN~G~~~~~~~L~~~~~~~~~lgv  133 (327)
T cd04738          54 LAAGFDKNAEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGV  133 (327)
T ss_pred             ECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEHHCCCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             54588988589999996698679971436888889999857974675401100458717699999999840456871799


Q ss_pred             EEEEEE--C-----CHHHH---HHCCCCCCEEEEECCC-----------CCCHHHHHHHHHHCC------CEEEEEEECC
Q ss_conf             678851--2-----03367---6404776079997066-----------421589998677649------8259985233
Q gi|254780975|r   68 HLMISS--I-----DSHIN---IIADAGCDIITFHPES-----------SPHIRRSLRTIHAMG------KKTGVAINPE  120 (224)
Q Consensus        68 HLMv~~--P-----~~~i~---~~~~~g~d~i~~H~E~-----------~~~~~~~i~~i~~~g------~k~Giai~p~  120 (224)
                      -+.-..  |     +.|+.   ++... +|++++-.-+           .+.+.+.++.+++..      .-+-+-|.|+
T Consensus       134 nIg~nk~t~~e~~~~Dy~~~~~~l~~~-aDy~~iNiSsPNt~glr~lq~~~~l~~ll~~v~~~~~~~~~~~Pi~vKlsPD  212 (327)
T cd04738         134 NIGKNKDTPLEDAVEDYVIGVRKLGPY-ADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD  212 (327)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             985047882676899999999985355-7789995468898451002688999999999999998537788669981799


Q ss_pred             CCHHHHHHHHHH-----CCEEEEE-E-------------EEC-CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CC
Q ss_conf             344789988620-----1402899-8-------------306-7765332201357789986543138652698158-99
Q gi|254780975|r  121 TPVAILEDVIDE-----IDMILIM-T-------------VNP-GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGG-VT  179 (224)
Q Consensus       121 T~~~~i~~~l~~-----~D~vliM-~-------------V~P-G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGG-vn  179 (224)
                      .+-+.+..+++.     +|-|.+- |             ... |.||.+..+.+++.++++++..+. .+.|.-=|| .+
T Consensus       213 ~~~~~i~~i~~~~~~~g~dGvi~tNTt~~r~~~~~~~~~~~~GGlSG~pl~~~s~~~v~~v~~~~~~-~~pIIgvGGI~s  291 (327)
T cd04738         213 LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGG-KIPIIGVGGISS  291 (327)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCC
T ss_conf             7667899999999973997899958855542124565556668636406789999999999997499-981999889799


Q ss_pred             HHHHHHHHHCCCCEEEECHH-HHCCCCHH
Q ss_conf             88999999679989997426-63789989
Q gi|254780975|r  180 SRNIKSLVQAGADLLVVGSS-FFNQKGEI  207 (224)
Q Consensus       180 ~~~i~~l~~~Gad~~V~Gsa-if~~~d~~  207 (224)
                      .+.+.+...+||+.+=++|+ +|+.+...
T Consensus       292 ~~Da~e~i~aGAslVQiyT~liy~GP~li  320 (327)
T cd04738         292 GEDAYEKIRAGASLVQLYTGLVYEGPGLV  320 (327)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCCHHH
T ss_conf             99999999869969987689893190699


No 199
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=96.73  E-value=0.022  Score=35.59  Aligned_cols=117  Identities=22%  Similarity=0.383  Sum_probs=71.3

Q ss_pred             CHHHHHHCC-CC---------CCEEEE---ECCCCCCHHHHHHHHHHCC-CEEEEEEECCCCHHHHHHHHH-HCCEEEEE
Q ss_conf             033676404-77---------607999---7066421589998677649-825998523334478998862-01402899
Q gi|254780975|r   75 DSHINIIAD-AG---------CDIITF---HPESSPHIRRSLRTIHAMG-KKTGVAINPETPVAILEDVID-EIDMILIM  139 (224)
Q Consensus        75 ~~~i~~~~~-~g---------~d~i~~---H~E~~~~~~~~i~~i~~~g-~k~Giai~p~T~~~~i~~~l~-~~D~vliM  139 (224)
                      .+.+++++- +|         .|.+-+   |.-....+.+.++..|..- ...-+-+-.+|. +.++..+. ..|.|++ 
T Consensus       137 lR~leKyAV~~GGG~nHR~gLsDavliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesl-e~~~eAl~agaDiImL-  214 (280)
T COG0157         137 LRLLEKYAVRAGGGDNHRFGLSDAVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESL-EEAEEALEAGADIIML-  214 (280)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCH-HHHHHHHHCCCCEEEE-
T ss_conf             78999999996497421377752577604478875359999999997589986289974999-9999999749999997-


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             830677653322013577899865431-38652698158998899999967998999742663789
Q gi|254780975|r  140 TVNPGFGGQQLIESTIPKIRQAKALIG-KRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       140 ~V~PG~~Gq~f~~~~l~kI~~l~~~~~-~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                              -.|.+   +-++++-+++. +.+..+++-||||.+|++.+.+.|+|.+.+|.-....+
T Consensus       215 --------DNm~~---e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~galths~~  269 (280)
T COG0157         215 --------DNMSP---EELKEAVKLLGLAGRALLEASGGITLENIREYAETGVDVISVGALTHSAP  269 (280)
T ss_pred             --------CCCCH---HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             --------69999---99999999744477669997589787789998626997998073304775


No 200
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=96.70  E-value=0.059  Score=32.83  Aligned_cols=184  Identities=15%  Similarity=0.186  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE--EEEEE------EECCHHHHHHCCCCCCEE
Q ss_conf             9999999999659989999734263458434178999986412564168--56788------512033676404776079
Q gi|254780975|r   18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD--CHLMI------SSIDSHINIIADAGCDII   89 (224)
Q Consensus        18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d--vHLMv------~~P~~~i~~~~~~g~d~i   89 (224)
                      .+++..+.+.++.++.+-+==-+|..+.=+|.  ..++.-+.+++--.|  =.|+|      .+...-.+.+.++|+|.+
T Consensus       181 sl~eA~~lL~~~kiekLpvVd~~g~L~gLiT~--kDi~k~~~~P~a~~D~~grL~VgAAIg~~d~~eRa~~Lv~aGvD~l  258 (497)
T PRK07107        181 TLKEANNIIWDHKLNTLPIIDKNQHLVYMVFR--KDYDSHKENPLELLDSSKRYVVGAGINTRDYEERVPALVEAGADVL  258 (497)
T ss_pred             CHHHHHHHHHHCCCCCEEEECCCCCEEEEEEH--HHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEE
T ss_conf             99999999986344430278379958999983--7888864396311376788889996377789999999998599999


Q ss_pred             EEECCCCC--CHHHHHHHHHHCC-CEEEE-EEECCCCHHHHHHHHH-HCCEEEEEEEECCC---------CCCCCCCHHH
Q ss_conf             99706642--1589998677649-82599-8523334478998862-01402899830677---------6533220135
Q gi|254780975|r   90 TFHPESSP--HIRRSLRTIHAMG-KKTGV-AINPETPVAILEDVID-EIDMILIMTVNPGF---------GGQQLIESTI  155 (224)
Q Consensus        90 ~~H~E~~~--~~~~~i~~i~~~g-~k~Gi-ai~p~T~~~~i~~~l~-~~D~vliM~V~PG~---------~Gq~f~~~~l  155 (224)
                      ++-.-+-.  ...+.++++|+.- -.+-+ |=|-.|. +-.+.+++ -+|.|-+ ++-||-         -|-+-...++
T Consensus       259 viD~AhGhs~~v~~~ik~ik~~~~~~~~i~aGNVaT~-~~~~~L~~aGad~vkV-GiGpGSiCtTr~v~gvG~pQ~sAv~  336 (497)
T PRK07107        259 CIDSSDGYSEWQKRTLDYIKEKYGDTVKVGAGNVVDR-DGFLYLAEAGADFVKV-GIGGGSICITREQKGIGRGQATALI  336 (497)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCH-HHHHHHHHCCCCEEEE-CCCCCCCCEECCCCCCCCCHHHHHH
T ss_conf             8034353529999999999986698763414521269-9999999808986897-1159966211301256773488999


Q ss_pred             HHHHHHHHHHHCCC--CEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             77899865431386--52698158998-8999999679989997426637899
Q gi|254780975|r  156 PKIRQAKALIGKRS--ISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       156 ~kI~~l~~~~~~~~--~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      +-.+..+++..+.+  ++|..||||+. -.+.+...+|||.+-.||.+-+.+.
T Consensus       337 ~~a~~~~~~~~~~g~~vpiiADGGi~~sGDi~KAlaaGA~~VMlGsllAGt~E  389 (497)
T PRK07107        337 DVAKARDEYFERTGVYIPICSDGGIVHDYHMTLALAMGADFIMLGRYFARFDE  389 (497)
T ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf             99999888777416763287178756554599998538988998811057778


No 201
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=96.69  E-value=0.045  Score=33.54  Aligned_cols=194  Identities=18%  Similarity=0.284  Sum_probs=119.9

Q ss_pred             CCCCEEEC--------HHHHCC--CHHHHHHHHHHHHHCCCCEEEEEEECCE-ECCCCCC----CHHHHHHHHH-CCCCE
Q ss_conf             97981881--------706325--8899999999999659989999734263-4584341----7899998641-25641
Q gi|254780975|r    1 MTPSIQIV--------PSILAA--DFSRLGEEISNITKAGAKQIHFDVMDGC-FVPNISF----GADVIRSLRS-YSDSV   64 (224)
Q Consensus         1 M~k~~~Is--------pSil~~--d~~~l~~~i~~l~~~~~d~iHiDImDg~-fvpn~~~----~~~~i~~i~~-~t~~~   64 (224)
                      |+|+++|.        -|+++.  ...++....+.+++.  .+.++++--|- |--.+-|    +++.++.+|+ .++.+
T Consensus         1 M~k~i~itDttlRDghQSL~ATRmrt~dmlpia~~~d~~--G~~s~E~wGGAtFd~~~Rfl~EdPWerLr~lr~~~pnt~   78 (499)
T PRK12330          1 MPRIIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNA--GYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSK   78 (499)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf             996335777764117562556458999999999998743--970798037702999998747698999999998677973


Q ss_pred             EEEEEE-------EEECC----HHHHHHCCCCCCEEEEECCCCC---CHHHHHHHHHHCCCEEEEEEECC-CCHHHHHHH
Q ss_conf             685678-------85120----3367640477607999706642---15899986776498259985233-344789988
Q gi|254780975|r   65 FDCHLM-------ISSID----SHINIIADAGCDIITFHPESSP---HIRRSLRTIHAMGKKTGVAINPE-TPVAILEDV  129 (224)
Q Consensus        65 ~dvHLM-------v~~P~----~~i~~~~~~g~d~i~~H~E~~~---~~~~~i~~i~~~g~k~Giai~p~-T~~~~i~~~  129 (224)
                      +..-|=       ...|.    .|++...++|.|++-+- .+.+   ++...++.+++.|..+--+|.-. .|+..++.|
T Consensus        79 lQmLlRG~N~vGy~~ypddvv~~fv~~~~~~GidifRiF-DaLNdv~Nm~~ai~~vk~~G~~~q~~i~yt~sPvht~~yy  157 (499)
T PRK12330         79 LQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVF-DALNDLRNLETSIKAVKKTGKHAQGTICYTVSPIHTTEGF  157 (499)
T ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHH
T ss_conf             231313355056425887999999999997699889972-4444577789999999971885899999605887789999


Q ss_pred             HHHCCEEEEE-----EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE----EECCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf             6201402899-----8306776533220135778998654313865269----81589988999999679989997426
Q gi|254780975|r  130 IDEIDMILIM-----TVNPGFGGQQLIESTIPKIRQAKALIGKRSISLE----VDGGVTSRNIKSLVQAGADLLVVGSS  199 (224)
Q Consensus       130 l~~~D~vliM-----~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~----vDGGvn~~~i~~l~~~Gad~~V~Gsa  199 (224)
                      ++....+.=|     ++. --+|---=..+.+.|+.+|+... .++.|+    -..|...-+.-...++|||++=...+
T Consensus       158 ~~~ak~l~~~G~d~i~IK-DmAGll~P~~a~~LV~~lk~~~g-~d~pI~~HtH~T~G~~~~~~l~AieAGvDivD~A~~  234 (499)
T PRK12330        158 VEQAKRLLDMGCDSICIK-DMAALLKPQPAYDLVKGIKEACG-PDTRVHVHAHATTGVTLVSLMKAIEAGVDVVDTAIS  234 (499)
T ss_pred             HHHHHHHHHCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHCC-CCCCEEEECCCCCCHHHHHHHHHHHCCCCEECCCCC
T ss_conf             999999997599989984-75346788999999999998638-998379851788746999999999849988724454


No 202
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain.  DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.63  E-value=0.033  Score=34.45  Aligned_cols=143  Identities=15%  Similarity=0.260  Sum_probs=86.3

Q ss_pred             CCCEEEEEEEEE-ECCHH---HHHHCCCCCCEEEEECCC--C-----------CC---HHHHHHHHHHCCCEE-EEEEEC
Q ss_conf             564168567885-12033---676404776079997066--4-----------21---589998677649825-998523
Q gi|254780975|r   61 SDSVFDCHLMIS-SIDSH---INIIADAGCDIITFHPES--S-----------PH---IRRSLRTIHAMGKKT-GVAINP  119 (224)
Q Consensus        61 t~~~~dvHLMv~-~P~~~---i~~~~~~g~d~i~~H~E~--~-----------~~---~~~~i~~i~~~g~k~-Giai~p  119 (224)
                      .+.|+=+-++.. +++.|   .+.+.++|+|++.+-.-+  +           .+   +.++++.+++.-.++ -+=|.|
T Consensus        98 ~~~~~i~si~~~~~~~~~~~~a~~~~~~gad~lElNiScPN~~~~~~~g~~~~~~~~~l~~i~~~v~~~~~~Pi~vKLsP  177 (299)
T cd02940          98 PDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP  177 (299)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             99737988517898789999999998718888998267889876123455524499999999999986247864896288


Q ss_pred             C-CCHHHHHHHHHH--CCEEEE-------EEEE----------------CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             3-344789988620--140289-------9830----------------6776533220135778998654313865269
Q gi|254780975|r  120 E-TPVAILEDVIDE--IDMILI-------MTVN----------------PGFGGQQLIESTIPKIRQAKALIGKRSISLE  173 (224)
Q Consensus       120 ~-T~~~~i~~~l~~--~D~vli-------M~V~----------------PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~  173 (224)
                      + |.+..+...+..  +|.|.+       |.++                =|.+|.+..+.++.-|+++++... .++.|.
T Consensus       178 ~~~~i~~ia~~~~~~gadgiv~~Nt~~~~~~i~~d~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~i~~~~~-~~i~Ii  256 (299)
T cd02940         178 NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPE-PGLPIS  256 (299)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCEE
T ss_conf             7154999999999859989999766677565442235666564567777845587889999999999999648-997789


Q ss_pred             EECCC-CHHHHHHHHHCCCCEEEECHHHH-CCC
Q ss_conf             81589-98899999967998999742663-789
Q gi|254780975|r  174 VDGGV-TSRNIKSLVQAGADLLVVGSSFF-NQK  204 (224)
Q Consensus       174 vDGGv-n~~~i~~l~~~Gad~~V~Gsaif-~~~  204 (224)
                      -=||| +.+.+-+...+||+.+=++|+++ ..+
T Consensus       257 g~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp  289 (299)
T cd02940         257 GIGGIESWEDAAEFLLLGASVVQVCTAVMNQGF  289 (299)
T ss_pred             EECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCH
T ss_conf             989959999999999849989999899998098


No 203
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.55  E-value=0.074  Score=32.19  Aligned_cols=185  Identities=19%  Similarity=0.220  Sum_probs=111.7

Q ss_pred             EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEE---EECCHHHHHHC
Q ss_conf             881706325889999999999965998999973426345843417899998641256416856788---51203367640
Q gi|254780975|r    6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMI---SSIDSHINIIA   82 (224)
Q Consensus         6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv---~~P~~~i~~~~   82 (224)
                      .+.|=|-.-+..+-....+.|-++|++-+.|-.       |.-...+.|+.+++  ..| ++.+=.   -+| ..+++..
T Consensus        14 ~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl-------~sp~a~e~I~~l~~--~~p-~~lIGAGTVL~~-~q~~~a~   82 (211)
T COG0800          14 PVVPVIRGDDVEEALPLAKALIEGGIPAIEITL-------RTPAALEAIRALAK--EFP-EALIGAGTVLNP-EQARQAI   82 (211)
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEC-------CCCCHHHHHHHHHH--HCC-CCEECCCCCCCH-HHHHHHH
T ss_conf             844899708999999999999976987699964-------79878999999998--674-658824556699-9999999


Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCC-HHHHHHH
Q ss_conf             47760799970664215899986776498--25998523334478998862014028998306776533220-1357789
Q gi|254780975|r   83 DAGCDIITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIE-STIPKIR  159 (224)
Q Consensus        83 ~~g~d~i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~-~~l~kI~  159 (224)
                      .+|++.+.-.-  .+  .++++.++.+|+  -+|++    ||.|.+.-+-.            |+..-+|-| +++--..
T Consensus        83 ~aGa~fiVsP~--~~--~ev~~~a~~~~ip~~PG~~----TptEi~~Ale~------------G~~~lK~FPa~~~Gg~~  142 (211)
T COG0800          83 AAGAQFIVSPG--LN--PEVAKAANRYGIPYIPGVA----TPTEIMAALEL------------GASALKFFPAEVVGGPA  142 (211)
T ss_pred             HCCCCEEECCC--CC--HHHHHHHHHCCCCCCCCCC----CHHHHHHHHHC------------CHHHEEECCCCCCCCHH
T ss_conf             85997898999--99--9999999867996368879----98999999980------------72245643731137698


Q ss_pred             HHHHHHH-CCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH-HHHHHHHHHHHHHHH
Q ss_conf             9865431-3865269815899889999996799899974266378998-999999999999786
Q gi|254780975|r  160 QAKALIG-KRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGE-ISYAKRLNDLKKSAL  221 (224)
Q Consensus       160 ~l~~~~~-~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~-~~~~~~l~~l~~~a~  221 (224)
                      .++.+.. -.++.++.-|||+.+|++.+..+|+..+=.||.++..... ......+.++.+.+.
T Consensus       143 ~~ka~~gP~~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~~~~~~~~~~~~i~~~a~~~~  206 (211)
T COG0800         143 MLKALAGPFPQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVPKDLIAAGDWDRITELAREAV  206 (211)
T ss_pred             HHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHHHH
T ss_conf             9998738999985854698787779999717805995474426735553144999999999999


No 204
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=96.52  E-value=0.06  Score=32.77  Aligned_cols=171  Identities=15%  Similarity=0.141  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEEC---
Q ss_conf             99999999999659989999734263458434178999986412564168567885120336764047760799970---
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHP---   93 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~---   93 (224)
                      ....+.++.+.++|.|.+-+-=-||.--.|   -.+.++.||..+++|+=.  -..++....+     ++|.+.|..   
T Consensus        28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~~---~~~~v~~ik~~~~lPvil--fP~~~~~is~-----~aDavff~svLN   97 (240)
T COG1646          28 EEADEIAEAAAEAGTDAIMIGGSDGVTEEN---VDNVVEAIKERTDLPVIL--FPGSPSGISP-----YADAVFFPSVLN   97 (240)
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCCCCHHH---HHHHHHHHHHHCCCCEEE--ECCCHHCCCC-----CCCEEEEEEEEC
T ss_conf             452899999997399889977855644799---999999997506998899--3588100572-----577689888851


Q ss_pred             ------------CCCCCHHHHHHH-------HHHCCCEEEEEE----ECCCCHHHHHHHH--HHCCEEEEEEEEC-CCCC
Q ss_conf             ------------664215899986-------776498259985----2333447899886--2014028998306-7765
Q gi|254780975|r   94 ------------ESSPHIRRSLRT-------IHAMGKKTGVAI----NPETPVAILEDVI--DEIDMILIMTVNP-GFGG  147 (224)
Q Consensus        94 ------------E~~~~~~~~i~~-------i~~~g~k~Giai----~p~T~~~~i~~~l--~~~D~vliM~V~P-G~~G  147 (224)
                                  +...-..+....       +-+.+.++|-.=    .|.+..+....|.  .+.=..-++=++- |-.|
T Consensus        98 S~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~  177 (240)
T COG1646          98 SDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAG  177 (240)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHEECCEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_conf             79964041456620278876321115448999779971366235555789858899999999997198589998068889


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             33220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r  148 QQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       148 q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      ++-.+   +.+++.++.     ..+.+-|||+ .|++.++.++|||.+|.|+.+..+++
T Consensus       178 ~Pv~~---e~v~~v~~~-----~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~  228 (240)
T COG1646         178 DPVPV---EMVSRVLSD-----TPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPD  228 (240)
T ss_pred             CCCCH---HHHHHHHCC-----CEEEECCCCCCHHHHHHHHHCCCCEEEECCEEECCHH
T ss_conf             98688---999986145-----5089858849899999999717998997700200878


No 205
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=96.50  E-value=0.08  Score=31.98  Aligned_cols=198  Identities=13%  Similarity=0.189  Sum_probs=115.7

Q ss_pred             EEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEE-----E-----------CCEECCCCCCC---HH----HHHHH-HHC
Q ss_conf             1881706325889999999999965998999973-----4-----------26345843417---89----99986-412
Q gi|254780975|r    5 IQIVPSILAADFSRLGEEISNITKAGAKQIHFDV-----M-----------DGCFVPNISFG---AD----VIRSL-RSY   60 (224)
Q Consensus         5 ~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDI-----m-----------Dg~fvpn~~~~---~~----~i~~i-~~~   60 (224)
                      +-++++.++.+..    .++.+...|+-.+-+==     -           +.-..+.++|+   .+    .+..+ ++.
T Consensus        15 i~lAaG~~~~~~e----~~~~~~~~G~G~v~~kTit~~pq~GNp~PR~~r~~~~~iN~~G~~n~G~~~~~~~l~~~~~~~   90 (308)
T PRK02506         15 LMNAAGVYCMTKE----ELEEVEASQAGSFVTKTATLEVRPGNPEPRYADTPLGSINSMGLPNNGFDYYLDYVLDLQKTG   90 (308)
T ss_pred             CEECCCCCCCCHH----HHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             8878678998999----999999769738995423545766999986997675301215478563899999889999627


Q ss_pred             CCCEEEEEEEEEECCHHH---HHHCCCC-CCEEEEECCC--C-------CC---HHHHHHHHHHCCCEE-EEEEECCCCH
Q ss_conf             564168567885120336---7640477-6079997066--4-------21---589998677649825-9985233344
Q gi|254780975|r   61 SDSVFDCHLMISSIDSHI---NIIADAG-CDIITFHPES--S-------PH---IRRSLRTIHAMGKKT-GVAINPETPV  123 (224)
Q Consensus        61 t~~~~dvHLMv~~P~~~i---~~~~~~g-~d~i~~H~E~--~-------~~---~~~~i~~i~~~g~k~-Giai~p~T~~  123 (224)
                      .+.|+-+-++-.+++.|.   +.+..++ +|++.+-.-+  +       .+   +.++++.+++.-.++ .+=|.|+.++
T Consensus        91 ~~~~vi~si~g~~~~e~~~~~~~~~~~~~~~~ielNiScPNt~g~~~~~~d~~~~~~il~~v~~~~~~Pi~vKlsP~~~~  170 (308)
T PRK02506         91 PHKPHFLSVVGLSPEETHTILKKIQASDFEGLVELNLSCPNVPGKPQIAYDFETTDQILTEVFTYFTKPLGVKLPPYFDI  170 (308)
T ss_pred             CCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf             99975888850775377888999875475425546333788510555522899999999999987503334558987776


Q ss_pred             HHHHHHHHHC-----CEEEE-------EEE-------EC-----CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-
Q ss_conf             7899886201-----40289-------983-------06-----77653322013577899865431386526981589-
Q gi|254780975|r  124 AILEDVIDEI-----DMILI-------MTV-------NP-----GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV-  178 (224)
Q Consensus       124 ~~i~~~l~~~-----D~vli-------M~V-------~P-----G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-  178 (224)
                      ..+......+     +.+..       |.+       .|     |.||.+..+.++..|+++.+... .++.|.-=||| 
T Consensus       171 ~~~~~~a~~~~~~~~~~i~~~nt~~~~~~i~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~~~~~~~-~~i~IIg~GGI~  249 (308)
T PRK02506        171 VHFDQAAAIFNKYPLAFVNCVNSIGNGLVIEDESVVIKPKNGFGGIGGDYIKPTALANVHAFYQRLK-PSIQIIGTGGVK  249 (308)
T ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEECCCC
T ss_conf             7699999985615653798870235662013775101567887887761133799999999999838-996389866707


Q ss_pred             CHHHHHHHHHCCCCEEEECHHH-HCCCCHH
Q ss_conf             9889999996799899974266-3789989
Q gi|254780975|r  179 TSRNIKSLVQAGADLLVVGSSF-FNQKGEI  207 (224)
Q Consensus       179 n~~~i~~l~~~Gad~~V~Gsai-f~~~d~~  207 (224)
                      +.+.+-+...+||+.+=++|++ |..+...
T Consensus       250 s~~Da~e~i~aGAs~VQv~Tal~~~Gp~~~  279 (308)
T PRK02506        250 TGRDAFEHILCGASMVQVGTALHKEGPAIF  279 (308)
T ss_pred             CHHHHHHHHHCCCCCEEEEEEEEEECCHHH
T ss_conf             899999999819872068422204594799


No 206
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=96.43  E-value=0.084  Score=31.82  Aligned_cols=126  Identities=16%  Similarity=0.309  Sum_probs=82.9

Q ss_pred             HHHHCCCCCCEEEE-EC-------CCCCCHHHHHHHHHHCCCEEEEEEECCC-------CH----HHHHHHHHHCCE--E
Q ss_conf             67640477607999-70-------6642158999867764982599852333-------44----789988620140--2
Q gi|254780975|r   78 INIIADAGCDIITF-HP-------ESSPHIRRSLRTIHAMGKKTGVAINPET-------PV----AILEDVIDEIDM--I  136 (224)
Q Consensus        78 i~~~~~~g~d~i~~-H~-------E~~~~~~~~i~~i~~~g~k~Giai~p~T-------~~----~~i~~~l~~~D~--v  136 (224)
                      ..++.+.|++++.+ |.       |+...+.+.+..+.+.|..+-+.+.-..       ..    +.+...++.++.  =
T Consensus        77 ~~mL~d~G~~~viiGHSERR~~~~Et~~~i~~K~~~a~~~~l~pI~CiGE~~~~~~~~~~~~~l~~Ql~~~l~~~~~~~~  156 (242)
T cd00311          77 AEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAP  156 (242)
T ss_pred             HHHHHHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHCCCHHCC
T ss_conf             99999759998997558989881998799999999999879927999366066554043999999999999847101036


Q ss_pred             EEEEEEC----CCCCCCCCCH-HHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHCC-CCEEEECHHHHCCC
Q ss_conf             8998306----7765332201-35778998654313------86526981589988999999679-98999742663789
Q gi|254780975|r  137 LIMTVNP----GFGGQQLIES-TIPKIRQAKALIGK------RSISLEVDGGVTSRNIKSLVQAG-ADLLVVGSSFFNQK  204 (224)
Q Consensus       137 liM~V~P----G~~Gq~f~~~-~l~kI~~l~~~~~~------~~~~I~vDGGvn~~~i~~l~~~G-ad~~V~Gsaif~~~  204 (224)
                      ++..-+|    | +|+.-.+. .-+-++.+|+...+      .++.|---|+||.+|+.++.+.+ +|-+-+|||-.+.+
T Consensus       157 ~iIAYEPvWAIG-tG~~as~~~i~ev~~~Ir~~l~~~~~~~~~~v~iLYGGSV~~~N~~~i~~~~~vdG~LvG~ASl~~~  235 (242)
T cd00311         157 VVIAYEPVWAIG-TGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAE  235 (242)
T ss_pred             EEEEECCHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH
T ss_conf             099977688618-9999999999999999999999862020367548960778988999995689999788535767888


No 207
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=96.35  E-value=0.097  Score=31.42  Aligned_cols=49  Identities=22%  Similarity=0.369  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHH-HCCCCEEEECHHHHCCCC
Q ss_conf             35778998654313865269815899-88999999-679989997426637899
Q gi|254780975|r  154 TIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLV-QAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       154 ~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~-~~Gad~~V~Gsaif~~~d  205 (224)
                      -++.|+++++..   ++++..-|+|. .+.+..+. ..|+|-+-.|.+.+++|-
T Consensus       171 ~w~~i~~~k~~~---~ipvi~NGdi~~~~d~~~~l~~tg~dgvMigRga~~nPw  221 (309)
T pfam01207       171 DWDAIKQVKQAV---SIPVIANGDITDAEDAQRCLSYTGADGVMIGRGALGNPW  221 (309)
T ss_pred             CHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCH
T ss_conf             418999999858---982898089488999999986109999998489774988


No 208
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=96.28  E-value=0.072  Score=32.26  Aligned_cols=130  Identities=17%  Similarity=0.244  Sum_probs=85.7

Q ss_pred             CCCHHHHHHHHHHHHHC--CCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf             25889999999999965--9989999734263458434178999986412564168567885120336764047760799
Q gi|254780975|r   13 AADFSRLGEEISNITKA--GAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIIT   90 (224)
Q Consensus        13 ~~d~~~l~~~i~~l~~~--~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~   90 (224)
                      ..+..+.-+|++.+.+.  |+..+  -+.|..|..|-..-.++.+.|++. +++..+-.-+.-.+..++.+.++|...|.
T Consensus       226 ~RSpe~VvdEIe~l~~~y~gv~~~--~f~DD~Ft~~~~r~~eic~~i~~l-~i~W~~~~Rv~~d~E~l~~mk~AGc~~v~  302 (472)
T TIGR03471       226 TRSAESVIEEVKYALENFPEVREF--FFDDDTFTDDKPRAEEIARKLGPL-GVTWSCNARANVDYETLKVMKENGLRLLL  302 (472)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHC-CCEEEEEEECCCCHHHHHHHHHHCCEEEE
T ss_conf             159999999999999866897589--994776678999999999999876-98278763034899999999983984899


Q ss_pred             EECCCCC--------------CHHHHHHHHHHCCCEEEEEEE---CCCCHHHHHHHHH-----HCCEEEEEEEE--CCC
Q ss_conf             9706642--------------158999867764982599852---3334478998862-----01402899830--677
Q gi|254780975|r   91 FHPESSP--------------HIRRSLRTIHAMGKKTGVAIN---PETPVAILEDVID-----EIDMILIMTVN--PGF  145 (224)
Q Consensus        91 ~H~E~~~--------------~~~~~i~~i~~~g~k~Giai~---p~T~~~~i~~~l~-----~~D~vliM~V~--PG~  145 (224)
                      +=+|+.+              +..+.++.++++|+.+-..+-   |+-..+.++.-+.     .+|++++-...  ||-
T Consensus       303 ~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~GI~v~~~FIiG~PgET~Eti~~Ti~fa~~l~~d~~~~si~tPyPGT  381 (472)
T TIGR03471       303 VGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGT  381 (472)
T ss_pred             EECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf             8037589999998538998999999999887579879999987799998899999999999759890899872588996


No 209
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.27  E-value=0.11  Score=31.15  Aligned_cols=183  Identities=15%  Similarity=0.138  Sum_probs=116.5

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECC
Q ss_conf             88999999999996599899997342634584341789999864125641685678851203367640477607999706
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPE   94 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E   94 (224)
                      |+..+.   +..+ .++.-+-+ ..|..|   |.=+.+.++.+|+.+++|+=--=-+-+|. .+.+-..+|||.|.+-+.
T Consensus        72 ~~~~~a---~~y~-~~a~aiSv-lTe~~~---F~G~~~~l~~vr~~~~~PiLrKDFiid~~-Qi~ea~~~GAdaiLLI~~  142 (459)
T PRK09427         72 DPAEIA---SVYK-HYASAISV-LTDEKY---FQGSFDFLPIVRAIVTQPILCKDFIIDPY-QVYLARYYQADAILLMLS  142 (459)
T ss_pred             CHHHHH---HHHH-HCCCEEEE-ECCCCC---CCCCHHHHHHHHHHCCCCEEEEEEECCHH-HHHHHHHCCCCEEEEECC
T ss_conf             999999---9997-05838999-537453---48888999999985799757100560099-999999809989998702


Q ss_pred             CCC--CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf             642--158999867764982599852333447899886201402899830677653322013577899865431386526
Q gi|254780975|r   95 SSP--HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISL  172 (224)
Q Consensus        95 ~~~--~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I  172 (224)
                      ...  .+.+..+..++.|..+=+=++-...++.....  ..+.|   +||-..= ..|. --++.-.++..+.|+.-+.|
T Consensus       143 ~L~~~~l~~l~~~a~~lgl~~LvEvh~~~el~~a~~~--~~~ii---GiNnRnL-~tf~-vdl~~t~~l~~~ip~~~~~v  215 (459)
T PRK09427        143 VLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIAL--GAKVI---GINNRNL-RDLS-IDLNRTRELAPLIPADVTVI  215 (459)
T ss_pred             CCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC--CCCEE---EEECCCC-CCEE-ECHHHHHHHHHHCCCCCEEE
T ss_conf             2899999999999998299079996899999999848--99989---9878988-6214-87799999997689997499


Q ss_pred             EEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf             981589988999999679989997426637899899999999
Q gi|254780975|r  173 EVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLN  214 (224)
Q Consensus       173 ~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~  214 (224)
                      .=-|==+.+.+..+.++ +|.+-+|+++-+++|+.++.+.|.
T Consensus       216 sESGI~~~~dv~~l~~~-~~~~LvGe~lmr~~d~~~~~r~l~  256 (459)
T PRK09427        216 SESGIYTHAQVRELSPF-VNGFLIGSSLMAEDDLDLAVRKLI  256 (459)
T ss_pred             ECCCCCCHHHHHHHHHH-CCEEEECHHHHCCCCHHHHHHHHH
T ss_conf             73799999999999843-999997858757999899999973


No 210
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=96.23  E-value=0.014  Score=36.90  Aligned_cols=164  Identities=18%  Similarity=0.241  Sum_probs=86.7

Q ss_pred             HHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCC-CCCH
Q ss_conf             999996599899997342634584341--7899998641256416856788512033676404776079997066-4215
Q gi|254780975|r   23 ISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPES-SPHI   99 (224)
Q Consensus        23 i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~-~~~~   99 (224)
                      .+.+.++|.|.+=+   -|..  +.+.  -.+.++.+|+ +++|+  =|-.-++....     -++|.+.|..=- ..++
T Consensus        24 ~~~~~~sgtDaI~V---GGS~--~vt~~~~~~~~~~ik~-~~lPv--iLfPg~~~~vs-----~~aDa~lf~sllns~np   90 (229)
T PRK04169         24 DLAICESGTDAIMI---GGSD--GVTEENVDELVSRIKR-YDLPV--ILFPGNVEGIS-----PGADAYLFPSVLNSRDP   90 (229)
T ss_pred             HHHHHHCCCCEEEE---CCCC--CCCHHHHHHHHHHHHH-CCCCE--EEECCCHHHCC-----CCCCEEEEEEEECCCCC
T ss_conf             99998629999998---8866--5686999999999861-39898--99459887748-----57786886765348991


Q ss_pred             HHHHH----HHHHC-----CCEE----EEEEECCCCHHHHH-------------HHHHHCC---EEEEEEEECC-CCCCC
Q ss_conf             89998----67764-----9825----99852333447899-------------8862014---0289983067-76533
Q gi|254780975|r  100 RRSLR----TIHAM-----GKKT----GVAINPETPVAILE-------------DVIDEID---MILIMTVNPG-FGGQQ  149 (224)
Q Consensus       100 ~~~i~----~i~~~-----g~k~----Giai~p~T~~~~i~-------------~~l~~~D---~vliM~V~PG-~~Gq~  149 (224)
                      ..++.    .+...     +.++    =+.+||++.+..+.             -+.....   ..-++=.+-| -.|.+
T Consensus        91 ~~lig~~~~aa~~~~~~~~~~E~ip~gYiv~~~g~~v~~vs~a~pi~~~~~~i~a~~alA~~~~g~~~iYLE~gsga~~p  170 (229)
T PRK04169         91 YWIIGAQVEAAKEYGDIIDWLEVIPEGYIVLNPGSAVAFVTEAKPIPLDKPDIAAYAALAAEYLGMPIVYLEYGGGAGDP  170 (229)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             36678999899875103676435445899987996002000773389996999999999999839808999658888997


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             220135778998654313865269815899-8899999967998999742663789
Q gi|254780975|r  150 LIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       150 f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      -   ..+.|+.+|+...  +..+.+-|||+ .+.+.++.++|||.+|+|+.+.+++
T Consensus       171 v---~~e~V~~v~~~l~--~~~LivGGGIrs~e~a~~~~~aGAD~IVvGn~ie~d~  221 (229)
T PRK04169        171 V---PPEMVKAVKKALT--DTPLIVGGGIRSPEQAREMAKAGADTIVVGTIIEEDI  221 (229)
T ss_pred             C---CHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCEECCH
T ss_conf             8---9999999997378--9878992896999999999976999999886201079


No 211
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR011858    This enzyme acts in the biosynthesis of histidine and has been characterised in Saccharomyces cerevisiae  and Arabidopsis  where it complements the Escherichia coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=96.21  E-value=0.0092  Score=37.97  Aligned_cols=71  Identities=23%  Similarity=0.379  Sum_probs=48.6

Q ss_pred             EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC--HHH-HHH
Q ss_conf             02899830677653322013577899865431386526981589988999999679989997426637899--899-999
Q gi|254780975|r  135 MILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKG--EIS-YAK  211 (224)
Q Consensus       135 ~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d--~~~-~~~  211 (224)
                      +|..++-+|-..            ..+|..+....-.+||=||||.+|....++.||-.+++=|.||.+..  ..+ -.+
T Consensus        61 HVImLG~nP~n~------------~AAk~AL~~~Pg~LQVGGGIN~~Na~~wl~~GAShVIVTSWlF~~~~qdkm~lDl~  128 (274)
T TIGR02129        61 HVIMLGPNPLNE------------DAAKEALSAYPGGLQVGGGINAENAQEWLDEGASHVIVTSWLFPDGKQDKMELDLE  128 (274)
T ss_pred             EEEEECCCCCCH------------HHHHHHHHHCCCCEECCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHH
T ss_conf             686408689668------------99999997566754405770368899998638972899766646988541222378


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780975|r  212 RLNDLK  217 (224)
Q Consensus       212 ~l~~l~  217 (224)
                      +|++|-
T Consensus       129 RL~~i~  134 (274)
T TIGR02129       129 RLKEIV  134 (274)
T ss_pred             HHHHHH
T ss_conf             888887


No 212
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.18  E-value=0.083  Score=31.86  Aligned_cols=129  Identities=16%  Similarity=0.267  Sum_probs=86.2

Q ss_pred             ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCC---CCCC------H----HHHHHHHHCCCCEEEEEEEE--
Q ss_conf             8170632588999999999996599899997342634584---3417------8----99998641256416856788--
Q gi|254780975|r    7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPN---ISFG------A----DVIRSLRSYSDSVFDCHLMI--   71 (224)
Q Consensus         7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn---~~~~------~----~~i~~i~~~t~~~~dvHLMv--   71 (224)
                      ++.-|.-.|...+.+..+.+++.|.|.  ||+.=|.=++.   -.+|      |    +.++.+++.+++|+.|-+=.  
T Consensus        67 v~vQl~G~dp~~la~Aa~i~~~~g~d~--IDlN~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a~~~PVTvK~RlG~  144 (333)
T PRK11815         67 VALQLGGSDPADLAEAAKLAEDWGYDE--INLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGI  144 (333)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHCCCCE--ECCCCCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             799974799999999999998739885--352389986887327801787079999999999998734885357863167


Q ss_pred             E--ECC----HHHHHHCCCCCCEEEEECCCC--------C-------CHHHHHHHHHHCCCEEEEEEECC-CCHHHHHHH
Q ss_conf             5--120----336764047760799970664--------2-------15899986776498259985233-344789988
Q gi|254780975|r   72 S--SID----SHINIIADAGCDIITFHPESS--------P-------HIRRSLRTIHAMGKKTGVAINPE-TPVAILEDV  129 (224)
Q Consensus        72 ~--~P~----~~i~~~~~~g~d~i~~H~E~~--------~-------~~~~~i~~i~~~g~k~Giai~p~-T~~~~i~~~  129 (224)
                      +  ++.    ++++.+.++|++.+++|.-..        +       +. +.+..+++.-...-+.+|-+ ++.+.....
T Consensus       145 d~~d~~~~l~~f~~~~~~aG~~~i~vH~R~a~l~Glspk~nR~ippl~~-~~v~~lk~~~p~ipvi~NGdI~s~~~~~~~  223 (333)
T PRK11815        145 DDQDSYEFLCDFVDTVAEAGCDRFIVHARKAWLKGLSPKENREIPPLDY-DRVYRLKRDFPHLTIEINGGIKTLEEAKEH  223 (333)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCHHHHCCCCCHHH-HHHHHHHHHCCCCEEEECCCCCCHHHHHHH
T ss_conf             7775289999999999975998899960278772678777505873048-999999976678718845996999999999


Q ss_pred             HHHCCEEEE
Q ss_conf             620140289
Q gi|254780975|r  130 IDEIDMILI  138 (224)
Q Consensus       130 l~~~D~vli  138 (224)
                      ++.+|.|++
T Consensus       224 l~~~DGVMi  232 (333)
T PRK11815        224 LQHVDGVMI  232 (333)
T ss_pred             HHCCCEEEE
T ss_conf             855996211


No 213
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=96.15  E-value=0.018  Score=36.18  Aligned_cols=165  Identities=17%  Similarity=0.239  Sum_probs=91.4

Q ss_pred             HHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCC-CCHHHH
Q ss_conf             9999659989999734263458434178999986412564168567885120336764047760799970664-215899
Q gi|254780975|r   24 SNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESS-PHIRRS  102 (224)
Q Consensus        24 ~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~-~~~~~~  102 (224)
                      +.++++|.|.+=+-=-|+.   +-++ ...++.+++.++ ++-|=|-.-++...     ..++|.+.|..=-. .++..+
T Consensus        19 ~~~~~sgtDai~VGGS~~~---~~~~-~~~v~~ik~~~~-~~PvilfPg~~~~i-----s~~aDa~lf~sllNs~n~~~l   88 (219)
T cd02812          19 KLAEESGTDAIMVGGSDGV---SSTL-DNVVRLIKRIRR-PVPVILFPSNPEAV-----SPGADAYLFPSVLNSGDPYWI   88 (219)
T ss_pred             HHHHHHCCCEEEECCCCCC---HHHH-HHHHHHHHHHCC-CCCEEEECCCHHHC-----CCCCCEEEEEEEECCCCCHHH
T ss_conf             9999769999999375574---4779-999999997378-99989957986656-----867786886875338992367


Q ss_pred             H-------HHHHH----------------CCCEEEEEE--ECCCCHHHHHHHHHHCCEEE--EEEEECCCCCCCCCCHHH
Q ss_conf             9-------86776----------------498259985--23334478998862014028--998306776533220135
Q gi|254780975|r  103 L-------RTIHA----------------MGKKTGVAI--NPETPVAILEDVIDEIDMIL--IMTVNPGFGGQQLIESTI  155 (224)
Q Consensus       103 i-------~~i~~----------------~g~k~Giai--~p~T~~~~i~~~l~~~D~vl--iM~V~PG~~Gq~f~~~~l  155 (224)
                      +       ..+++                -|.++|-.-  +|....+.+.-|.--.+++-  ++=.+  .||.+   -..
T Consensus        89 ig~~~~aa~~~~~~~~~~e~ip~gYiv~~~g~~v~~v~~a~~~~~~~~~~ayAlaae~lg~~~iYLE--gSGa~---v~~  163 (219)
T cd02812          89 IGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAEYLGMPIVYLE--YSGAY---GPP  163 (219)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE--CCCCC---CCH
T ss_conf             7889999998743167632200578998799814888246479998999999999998299389995--68997---999


Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             778998654313865269815899-88999999679989997426637899
Q gi|254780975|r  156 PKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       156 ~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      +.|+..|+...  +..+.|-|||+ .+.+.++.++|||.+|.|+++..++|
T Consensus       164 e~V~~vk~~l~--~~~LivGGGIrs~e~a~~~~~AgAD~IVvGn~iee~~~  212 (219)
T cd02812         164 EVVRAVKKVLG--DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPN  212 (219)
T ss_pred             HHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHCCCCEEEECCCEEECHH
T ss_conf             99999998467--97099928979999999999869999998872240689


No 214
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=96.11  E-value=0.13  Score=30.64  Aligned_cols=173  Identities=14%  Similarity=0.259  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEE-CCEECCCCCCCHHHH-------HHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCE
Q ss_conf             99999999999659989999734-263458434178999-------9864125641685678851203367640477607
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVM-DGCFVPNISFGADVI-------RSLRSYSDSVFDCHLMISSIDSHINIIADAGCDI   88 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDIm-Dg~fvpn~~~~~~~i-------~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~   88 (224)
                      -...++++.+.++|+|-+=+-=| |.-|..  ..+|+.+       .++++...+|+=|-+.-++|..-+.-...+|++.
T Consensus        29 e~A~~ea~~l~~~GvDgvivEN~~D~Py~~--~~~~etvaamt~i~~~v~~~~~iP~GvnvL~nd~~aalaiA~a~ga~F  106 (254)
T pfam03437        29 DKAVSDAMALEEGGFDAVILENYGDAPYLK--TVGPETVAAMTVIAGEVKSDVSIPLGINVLRNDAVAALAIAYAVGADF  106 (254)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCC--CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCE
T ss_conf             999999999997799889980689977746--776698999999999998744887367776178589999999829976


Q ss_pred             EEE--ECCC--------CCCHHHHHHHHHHCCCEEEEE--EEC--C-----CCHHH-HHHHHHH--CCEEEEEEEECCCC
Q ss_conf             999--7066--------421589998677649825998--523--3-----34478-9988620--14028998306776
Q gi|254780975|r   89 ITF--HPES--------SPHIRRSLRTIHAMGKKTGVA--INP--E-----TPVAI-LEDVIDE--IDMILIMTVNPGFG  146 (224)
Q Consensus        89 i~~--H~E~--------~~~~~~~i~~i~~~g~k~Gia--i~p--~-----T~~~~-i~~~l~~--~D~vliM~V~PG~~  146 (224)
                      |=+  +..+        ..+..+++++-+..+.++-+-  +++  .     .+++. .+.-...  .|.|.+=+   --.
T Consensus       107 IRv~~~~g~~~~d~G~~~~~a~~~~r~R~~l~a~v~i~aDV~~Kh~~~l~~~~~~~~~~~~~~~~~aDaiivTG---~~T  183 (254)
T pfam03437       107 IRVNVLTGVAASDQGILEGNAGELARYRKLLPSRIKILADVHVKHAVHLGNRDIESAVLDTIERGLADAVILSG---KTT  183 (254)
T ss_pred             EEECCEECEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECC---CCC
T ss_conf             98713765333577531553899999999719995899755001254579999899999999826898999787---302


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             5332201357789986543138652698158998899999967998999742663
Q gi|254780975|r  147 GQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       147 Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif  201 (224)
                      |++-.   +++++++|+..   .+++-+-+|+|.+|+.++.+. +|-+++||++=
T Consensus       184 G~~~~---~~~l~~vk~~~---~~PvlvGSGvt~~Ni~~~l~~-ADG~IVGS~~K  231 (254)
T pfam03437       184 GGEVD---LEELKLAKETV---PVPVLVGSGVNLENLEELWSI-ADGFIVGTSIK  231 (254)
T ss_pred             CCCCC---HHHHHHHHHHC---CCCEEEECCCCHHHHHHHHHH-CCEEEEEHHEE
T ss_conf             79999---99999999626---998899579898899999987-89999842230


No 215
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein; InterPro: IPR005991    This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria..
Probab=96.10  E-value=0.097  Score=31.43  Aligned_cols=129  Identities=20%  Similarity=0.400  Sum_probs=95.1

Q ss_pred             CCHHHHHHCCCCCCEEEEECCCCCC--HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCC------
Q ss_conf             2033676404776079997066421--58999867764982599852333447899886201402899830677------
Q gi|254780975|r   74 IDSHINIIADAGCDIITFHPESSPH--IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGF------  145 (224)
Q Consensus        74 P~~~i~~~~~~g~d~i~~H~E~~~~--~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~------  145 (224)
                      -.-..+.+.++|+|.+.+-.-+..+  ....++.++....++-++-..-..-+-...+++-=-.|.-.+|-||.      
T Consensus       227 ~~~~~~~l~~aG~d~lv~dtahGhq~~~~~a~k~~~~ld~~~P~~aGn~v~a~G~rdl~~aGa~~~kvGvGPGamCttrm  306 (476)
T TIGR01303       227 VEGKAKALLDAGVDVLVIDTAHGHQEKMISAVKAVRALDLRVPIVAGNVVSAEGVRDLVEAGANIIKVGVGPGAMCTTRM  306 (476)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCEEECCCHHHHHHCCCCEEEECCCCCCHHHHHH
T ss_conf             23789999866885899834654068999999999860455865424224110048887447618986468860234444


Q ss_pred             ---CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHH---HCCCCH
Q ss_conf             ---6533220135778998654313865269815899-889999996799899974266---378998
Q gi|254780975|r  146 ---GGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSF---FNQKGE  206 (224)
Q Consensus       146 ---~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsai---f~~~d~  206 (224)
                         -|.|--..+++-..+.|++    +-.+|.||||+ ...+.-...+|+..+.+||-.   |.+|..
T Consensus       307 ~tGvGrPqfsavleCa~~a~~~----G~h~WadGG~r~PrdvalalaaGasnvm~GsWf~GtyesPGd  370 (476)
T TIGR01303       307 MTGVGRPQFSAVLECAAEARKL----GKHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGD  370 (476)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHC----CCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf             3057871378998988999860----772640688676377777665064302441100355478510


No 216
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.03  E-value=0.14  Score=30.39  Aligned_cols=152  Identities=19%  Similarity=0.197  Sum_probs=91.6

Q ss_pred             CCEEEEEEEEEECCHHHHH------HCCCCCCEEEEECCC------------CCCHHHHHHHHHHCCCE-EEEEEECCCC
Q ss_conf             6416856788512033676------404776079997066------------42158999867764982-5998523334
Q gi|254780975|r   62 DSVFDCHLMISSIDSHINI------IADAGCDIITFHPES------------SPHIRRSLRTIHAMGKK-TGVAINPETP  122 (224)
Q Consensus        62 ~~~~dvHLMv~~P~~~i~~------~~~~g~d~i~~H~E~------------~~~~~~~i~~i~~~g~k-~Giai~p~T~  122 (224)
                      ..|+-+-+.- .++.+...      ....++|++.+-.-+            .+.+.+.++.+++.-.. +.+-+.|+++
T Consensus        91 ~~pvi~si~g-~~~d~~~~~~~~~~~~~~~aD~ielNiScPn~~g~~~~~~~~~~~~~~~~~v~~~~~~Pv~vKlsP~~~  169 (294)
T cd04741          91 AKPFFISVTG-SAEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTD  169 (294)
T ss_pred             CCCEEEECCC-CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf             8708998999-836799999999865225564799970378988731001399999999999984157855997289888


Q ss_pred             HHHHHHHHHH-------CCEEE-EEEE-----------------E---CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             4789988620-------14028-9983-----------------0---67765332201357789986543138652698
Q gi|254780975|r  123 VAILEDVIDE-------IDMIL-IMTV-----------------N---PGFGGQQLIESTIPKIRQAKALIGKRSISLEV  174 (224)
Q Consensus       123 ~~~i~~~l~~-------~D~vl-iM~V-----------------~---PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~v  174 (224)
                      .+.+......       ++.+. +-|+                 .   =|.||.+..+.++..|+++++..+. ++.|.-
T Consensus       170 ~~~~~~~~~~~~~~~~g~~~i~~~nt~~~~l~id~~~~~~~~~~~~~~GGlSG~~l~p~al~~v~~~~~~~~~-~i~Iig  248 (294)
T cd04741         170 PAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPS-EIQIIG  248 (294)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEE
T ss_conf             7899999999865788747999880367763335776564334556666667852158999999999997499-987999


Q ss_pred             ECCC-CHHHHHHHHHCCCCEEEECHHHH-CCCCHHHHHHHHHHHH
Q ss_conf             1589-98899999967998999742663-7899899999999999
Q gi|254780975|r  175 DGGV-TSRNIKSLVQAGADLLVVGSSFF-NQKGEISYAKRLNDLK  217 (224)
Q Consensus       175 DGGv-n~~~i~~l~~~Gad~~V~Gsaif-~~~d~~~~~~~l~~l~  217 (224)
                      =||| +.+.+-+...+||+.+=++|+++ ..++.  ..+-.++|+
T Consensus       249 ~GGI~s~~da~e~i~aGAs~VQv~Tal~~~Gp~~--~~~I~~~L~  291 (294)
T cd04741         249 VGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKV--FARIEKELE  291 (294)
T ss_pred             ECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHH--HHHHHHHHH
T ss_conf             8997999999999983997999979999709299--999998799


No 217
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776    This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=95.98  E-value=0.027  Score=35.01  Aligned_cols=145  Identities=17%  Similarity=0.300  Sum_probs=106.4

Q ss_pred             CHHHHHHHHH-CCCCEEEEEE----------EEEE-CCHHHHHHCCCCCCEEEEECCCCCC---HHHHHHHHHHCCC-EE
Q ss_conf             7899998641-2564168567----------8851-2033676404776079997066421---5899986776498-25
Q gi|254780975|r   50 GADVIRSLRS-YSDSVFDCHL----------MISS-IDSHINIIADAGCDIITFHPESSPH---IRRSLRTIHAMGK-KT  113 (224)
Q Consensus        50 ~~~~i~~i~~-~t~~~~dvHL----------Mv~~-P~~~i~~~~~~g~d~i~~H~E~~~~---~~~~i~~i~~~g~-k~  113 (224)
                      ++..+++||+ .++.|+.==|          +-+| -++|+++.++.|.|.+=+ ..|.+|   +...|+.+|++|. .+
T Consensus        57 PW~RLR~lk~~~pnT~L~MLLRGQNLlGYRHYADDVVe~FV~~a~~NG~DVFRi-FDALND~RNl~~ai~a~Kk~g~dHv  135 (616)
T TIGR01108        57 PWERLRELKKALPNTKLQMLLRGQNLLGYRHYADDVVEAFVKKAVENGLDVFRI-FDALNDPRNLQKAIEAAKKHGADHV  135 (616)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf             558999999735787512342045423441584368999999999759808995-1245887789999999997389789


Q ss_pred             EEEEECCC-CHHHHHHHHHHCCEEEEEEEE-C---CCCCCCCCC-HHHHHHHHHHHHHHCCC--CEEEEECCCCHHHHHH
Q ss_conf             99852333-447899886201402899830-6---776533220-13577899865431386--5269815899889999
Q gi|254780975|r  114 GVAINPET-PVAILEDVIDEIDMILIMTVN-P---GFGGQQLIE-STIPKIRQAKALIGKRS--ISLEVDGGVTSRNIKS  185 (224)
Q Consensus       114 Giai~p~T-~~~~i~~~l~~~D~vliM~V~-P---G~~Gq~f~~-~~l~kI~~l~~~~~~~~--~~I~vDGGvn~~~i~~  185 (224)
                      =-||+-.| |++.+++|++....++=|+|+ .   --+|= +-| .+++-++.+|+-+++..  ++...=-|.-.=..-+
T Consensus       136 Qg~iSYTtSPvHTl~~yl~la~~L~~~G~DSI~IKDMaGl-LTP~~AYELV~alK~~~~n~pvhLH~H~TtGmA~~Allk  214 (616)
T TIGR01108       136 QGAISYTTSPVHTLEKYLELAKELLEMGVDSICIKDMAGL-LTPKVAYELVSALKKEFGNLPVHLHSHATTGMAEMALLK  214 (616)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
T ss_conf             9997124684367888999999999818860552020046-441589999999974239746886324723379999998


Q ss_pred             HHHCCCCEEEE
Q ss_conf             99679989997
Q gi|254780975|r  186 LVQAGADLLVV  196 (224)
Q Consensus       186 l~~~Gad~~V~  196 (224)
                      .++||+|.+=-
T Consensus       215 A~EAG~d~iDT  225 (616)
T TIGR01108       215 AIEAGADMIDT  225 (616)
T ss_pred             HHHCCCCCCHH
T ss_conf             88707880020


No 218
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=95.88  E-value=0.16  Score=29.99  Aligned_cols=189  Identities=19%  Similarity=0.249  Sum_probs=124.0

Q ss_pred             CCEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEE---EEECCHHHH
Q ss_conf             98188170632588999999999996599899997342634584341789999864125641685678---851203367
Q gi|254780975|r    3 PSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLM---ISSIDSHIN   79 (224)
Q Consensus         3 k~~~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLM---v~~P~~~i~   79 (224)
                      +..+|.|=|-.-|..+-....+.|-++|+..+-|=.       +..-..+.|+.||+  +.|-|+=+=   |-+ .+.+.
T Consensus         6 ~~~~ivPVi~~~~~~~A~~lA~aL~egG~~~~EvTl-------RT~~A~~aI~~l~~--~~P~~~~iGAGTVL~-~~Q~~   75 (205)
T TIGR01182         6 REAKIVPVIRIDDVEDALPLAKALIEGGLRVLEVTL-------RTPVALEAIRALRK--EVPKDALIGAGTVLN-PEQLR   75 (205)
T ss_pred             HHCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEEEE-------CCCCHHHHHHHHHH--HCCCCCEECCCCCCC-HHHHH
T ss_conf             566801788726787778999999867980898851-------47216899999997--282334871676489-89999


Q ss_pred             HHCCCCCCE-EEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCC-HHH
Q ss_conf             640477607-99970664215899986776498--25998523334478998862014028998306776533220-135
Q gi|254780975|r   80 IIADAGCDI-ITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIE-STI  155 (224)
Q Consensus        80 ~~~~~g~d~-i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~-~~l  155 (224)
                      +-.++||+. |+-|.+     .++++.+++.|+  -+|++    ||-|...-+ ++           |+.-=||=| +++
T Consensus        76 ~A~~AGA~F~vSPG~~-----p~l~~~~~~~~~P~iPGV~----tpsEi~~Al-~~-----------G~~~lKlFPAe~~  134 (205)
T TIGR01182        76 QAVAAGAQFIVSPGLT-----PELAKHAKDKGIPIIPGVA----TPSEIMLAL-EL-----------GITALKLFPAEVV  134 (205)
T ss_pred             HHHHCCCCEEECCCCC-----HHHHHHHHHCCCCEECCCC----CHHHHHHHH-HC-----------CCCEEEECCCCCC
T ss_conf             9997089578769788-----8999998508881217776----878999998-75-----------7746521256235


Q ss_pred             HHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH-HHHHHHHHHHHHHHHH
Q ss_conf             778998654313-865269815899889999996799899974266378998-9999999999997862
Q gi|254780975|r  156 PKIRQAKALIGK-RSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGE-ISYAKRLNDLKKSALA  222 (224)
Q Consensus       156 ~kI~~l~~~~~~-~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~-~~~~~~l~~l~~~a~a  222 (224)
                      -=++-++.+..- .+++++==||||.+|++++.+++.=..|+||-++..+-. .....++.+|.+.+.+
T Consensus       135 GG~~~lkAL~GPf~~v~F~PTGGi~l~N~~~YLa~p~v~c~GGSWl~P~~~~~~g~wd~i~~l~r~a~~  203 (205)
T TIGR01182       135 GGVKMLKALAGPFPQVRFCPTGGINLDNARDYLALPNVACVGGSWLVPKDLIAAGDWDEITELAREALE  203 (205)
T ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHH
T ss_conf             308999973165789845147999887899997189379981631464788758996799999999986


No 219
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205   This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=95.71  E-value=0.037  Score=34.10  Aligned_cols=187  Identities=16%  Similarity=0.214  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC--HHHHHHHHHCCCCEEEEEEEEEECCHH--------HHHHCCC-C
Q ss_conf             9999999999965998999973426345843417--899998641256416856788512033--------6764047-7
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG--ADVIRSLRSYSDSVFDCHLMISSIDSH--------INIIADA-G   85 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~--~~~i~~i~~~t~~~~dvHLMv~~P~~~--------i~~~~~~-g   85 (224)
                      .+..+.++.+-++|.|-+=+==-+|     -|+.  -..++.+|+...+|+=+  -..|+...        +..+.+. .
T Consensus        14 ~e~~eI~~a~~~~GTDail~GGs~g-----Vt~~~~~~~~~~~~e~~~~P~il--fPsn~~~~s~~~Da~f~~svlNS~~   86 (242)
T TIGR01768        14 EEADEIAKAAAESGTDAILVGGSQG-----VTLDKLDQLIEALRERYGVPIIL--FPSNLTNVSRKADALFFPSVLNSDD   86 (242)
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCCC-----CCHHHHHHHHHHHHHCCCCCEEE--ECCCCCCHHHCCCEEEEEEEEECCC
T ss_conf             6368999999835898898227787-----03688999999997405983798--4188742111067687711431699


Q ss_pred             CCEEEE--------ECCCCCCHHHHHHH---------HHHCCCEEEEEEECCC-CH--HHHHHHHHHCCEEEEEE---EE
Q ss_conf             607999--------70664215899986---------7764982599852333-44--78998862014028998---30
Q gi|254780975|r   86 CDIITF--------HPESSPHIRRSLRT---------IHAMGKKTGVAINPET-PV--AILEDVIDEIDMILIMT---VN  142 (224)
Q Consensus        86 ~d~i~~--------H~E~~~~~~~~i~~---------i~~~g~k~Giai~p~T-~~--~~i~~~l~~~D~vliM~---V~  142 (224)
                      .++|+=        |+|+.+....+.++         |-+.|..+|-.=...+ |.  +.+--|.-.....+=|.   .+
T Consensus        87 ~~wI~GkhaqWvr~q~~~~~~~~~~~~~~E~~~~gY~iv~pgg~aa~v~~A~~~P~~k~~~Aa~~~~a~~~~g~~~~YLE  166 (242)
T TIGR01768        87 PYWIIGKHAQWVRAQILAAPKFKKLGESLEIIPEGYIIVNPGGAAATVTKAKPIPYDKEDLAAYAALAEEMLGMPIIYLE  166 (242)
T ss_pred             CCEEECCHHHHHHHHHHHHHHHHHHHHHHEEHHEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             76453425999999998789887653134001211278758995588502357887768799999999998099689996


Q ss_pred             C-CCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHH
Q ss_conf             6-77653322013577899865431-3865269815899-8899999967998999742663789989999
Q gi|254780975|r  143 P-GFGGQQLIESTIPKIRQAKALIG-KRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYA  210 (224)
Q Consensus       143 P-G~~Gq~f~~~~l~kI~~l~~~~~-~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~  210 (224)
                      - |-.|.+-.|++..-+|++-.--. .-...+-+=|||+ .|.+.++..||||++|.|.-|.++++..+.+
T Consensus       167 agsgap~pvpPE~va~vk~v~~~aGyGGe~~L~vGGGIRs~E~A~~~a~AgAD~~VtGnvie~~~nv~~k~  237 (242)
T TIGR01768       167 AGSGAPEPVPPELVAEVKKVLDKAGYGGEVKLIVGGGIRSVEKARKLAEAGADVVVTGNVIEEDDNVVDKA  237 (242)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECCHHHHHHH
T ss_conf             37875479745899999987410478863257840764788999999534598999846875163789999


No 220
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=95.70  E-value=0.11  Score=31.20  Aligned_cols=189  Identities=20%  Similarity=0.291  Sum_probs=112.1

Q ss_pred             CCCCEEEC--------HHHHCC--CHHHHHHHHHHHHHCCCCEEEEEEECCEECC-CCCC----CHHHHHHHHH-CCCCE
Q ss_conf             97981881--------706325--8899999999999659989999734263458-4341----7899998641-25641
Q gi|254780975|r    1 MTPSIQIV--------PSILAA--DFSRLGEEISNITKAGAKQIHFDVMDGCFVP-NISF----GADVIRSLRS-YSDSV   64 (224)
Q Consensus         1 M~k~~~Is--------pSil~~--d~~~l~~~i~~l~~~~~d~iHiDImDg~fvp-n~~~----~~~~i~~i~~-~t~~~   64 (224)
                      |.|+++|.        =|+++.  ...++....+.+++.|+..  +++.-|..-. .+-|    +.+.++.+|+ .++.+
T Consensus         9 m~k~i~i~DTTlRDg~QSL~atr~~t~d~l~ia~~ld~~G~~s--iE~wGGAtfd~~~rfl~EdPwerlr~lr~~~pnt~   86 (468)
T PRK12581          9 MQQQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYS--LECWGGATFDACIRFLNEDPWERLRTLKKGLPNTR   86 (468)
T ss_pred             CCCEEEEEECCCCCHHHCCHHHHCCHHHHHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf             5540577878764242130355088999999999999729878--98358810999998748798999999998578973


Q ss_pred             EEEEEEE-------EECC----HHHHHHCCCCCCEEEEECCCCC---CHHHHHHHHHHCCCEEEEEEECCC-CHHHHHHH
Q ss_conf             6856788-------5120----3367640477607999706642---158999867764982599852333-44789988
Q gi|254780975|r   65 FDCHLMI-------SSID----SHINIIADAGCDIITFHPESSP---HIRRSLRTIHAMGKKTGVAINPET-PVAILEDV  129 (224)
Q Consensus        65 ~dvHLMv-------~~P~----~~i~~~~~~g~d~i~~H~E~~~---~~~~~i~~i~~~g~k~Giai~p~T-~~~~i~~~  129 (224)
                      +-.-+-.       ..|.    .+++...+.|.|++-+ ..+.+   ++...++.+++.|..+..++.-.+ |...++.|
T Consensus        87 lqmLlRg~n~vgy~~ypddvv~~fv~~~~~~Gidvfri-FD~LNd~~n~~~ai~~vk~~G~~~~~~i~yt~sp~ht~~yy  165 (468)
T PRK12581         87 LQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRI-FDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYY  165 (468)
T ss_pred             EEEEHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHH
T ss_conf             43001123320114588289999999999759987997-31467678999999999963874899999668975549999


Q ss_pred             HHHCCEEEEE-----EE-ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE----EECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf             6201402899-----83-06776533220135778998654313865269----815899889999996799899974
Q gi|254780975|r  130 IDEIDMILIM-----TV-NPGFGGQQLIESTIPKIRQAKALIGKRSISLE----VDGGVTSRNIKSLVQAGADLLVVG  197 (224)
Q Consensus       130 l~~~D~vliM-----~V-~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~----vDGGvn~~~i~~l~~~Gad~~V~G  197 (224)
                      ++....+.=|     ++ +..--..|  ..+.+.|+.+|+.   .++.|+    -+-|...-|.-..+++|||++=..
T Consensus       166 ~~~ak~l~~~Gad~I~iKDmaGlL~P--~~a~~LV~~lK~~---~~iPI~~HtH~t~Gla~a~~laAieAGaDiVD~A  238 (468)
T PRK12581        166 LSLVKELVEMGADSICIKDMAGILTP--KAAKELVSGIKAM---TNLPLIVHTHATSGISQMTYLAAVEAGADRIDTA  238 (468)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCH--HHHHHHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEC
T ss_conf             99999999739998998478777688--9999999999836---7986599825887549999999998199999744


No 221
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS.  The enzymatic mechanism of 1VHN is not known at the present.
Probab=95.68  E-value=0.2  Score=29.47  Aligned_cols=175  Identities=15%  Similarity=0.133  Sum_probs=99.1

Q ss_pred             HHHCCCCEEEEEEECCEECCCCCCCH-HHHHHHHH-CCCCEEEEEEEEEECCHHH---HHHCCCCCCEEEEECCC-----
Q ss_conf             99659989999734263458434178-99998641-2564168567885120336---76404776079997066-----
Q gi|254780975|r   26 ITKAGAKQIHFDVMDGCFVPNISFGA-DVIRSLRS-YSDSVFDCHLMISSIDSHI---NIIADAGCDIITFHPES-----   95 (224)
Q Consensus        26 l~~~~~d~iHiDImDg~fvpn~~~~~-~~i~~i~~-~t~~~~dvHLMv~~P~~~i---~~~~~~g~d~i~~H~E~-----   95 (224)
                      +.+.|+|...-   -..-+..+..+. ...+.+.. ..+.|+-+.|...+|+...   +.+.+.|+|.|-+-.-+     
T Consensus        19 ~~~~g~~~~~T---Emv~a~~~~~~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~d~IDlN~GCP~~~v   95 (231)
T cd02801          19 CRRYGADLVYT---EMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKV   95 (231)
T ss_pred             HHHHCCCEEEE---CCEEEHHHHCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf             99989398997---989987765388878987244866780799875898999999999887539999998389996997


Q ss_pred             ---------CCC---HHHHHHHHHHC-CCEEEEEEECCC----CHHHHHHHHHHCCEEEEEEEECCCCCCCCCC-HHHHH
Q ss_conf             ---------421---58999867764-982599852333----4478998862014028998306776533220-13577
Q gi|254780975|r   96 ---------SPH---IRRSLRTIHAM-GKKTGVAINPET----PVAILEDVIDEIDMILIMTVNPGFGGQQLIE-STIPK  157 (224)
Q Consensus        96 ---------~~~---~~~~i~~i~~~-g~k~Giai~p~T----~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~-~~l~k  157 (224)
                               ..+   +.++++.+++. +..+-+=+..+.    ....+-+.+... .+-.++|++....|.+.. --++.
T Consensus        96 ~~~g~Ga~Ll~~p~~v~~iv~~~~~~~~ipVsvKiRlg~~~~~~~~~~~~~l~~~-G~~~ltvH~Rt~~q~~~~~a~~e~  174 (231)
T cd02801          96 TKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDA-GASALTVHGRTREQRYSGPADWDY  174 (231)
T ss_pred             CCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECCCHHHCCCCCCCHHH
T ss_conf             0898307876297899999999997569947999970778634799999999976-998999835614414677622699


Q ss_pred             HHHHHHHHHCCCCEEEEECCCC-HHHHHHHHH-CCCCEEEECHHHHCCCCHH
Q ss_conf             8998654313865269815899-889999996-7998999742663789989
Q gi|254780975|r  158 IRQAKALIGKRSISLEVDGGVT-SRNIKSLVQ-AGADLLVVGSSFFNQKGEI  207 (224)
Q Consensus       158 I~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~-~Gad~~V~Gsaif~~~d~~  207 (224)
                      |+++++   ..++.+..-|+|. .+.+.++.+ .|+|-+-+|.+.+.+|-.-
T Consensus       175 i~~~~~---~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~iF  223 (231)
T cd02801         175 IAEIKE---AVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLF  223 (231)
T ss_pred             HHHHHH---CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHH
T ss_conf             999986---5997799838909999999999850999999878887698899


No 222
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=95.63  E-value=0.036  Score=34.21  Aligned_cols=51  Identities=25%  Similarity=0.380  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHCC---CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             357789986543138---652698158998899999967998999742663789
Q gi|254780975|r  154 TIPKIRQAKALIGKR---SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       154 ~l~kI~~l~~~~~~~---~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      .-.-++++|+.+++.   +++|.+-||++.+++..+.+.|+|.+=+||.+.+.+
T Consensus       227 ~~~l~~~vR~~LD~~G~~~vkI~aSggl~e~~I~~l~~~gID~~GVGt~l~~ap  280 (302)
T cd01571         227 FRYLIREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVGVDAFGVGTAISKAP  280 (302)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf             999999999999766988748999699999999999857999998185437998


No 223
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=95.57  E-value=0.044  Score=33.61  Aligned_cols=72  Identities=15%  Similarity=0.213  Sum_probs=46.6

Q ss_pred             HHHHHHHHHH--CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH------CCCCEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf             4789988620--1402899830677653322013577899865431------3865269815899889999996799899
Q gi|254780975|r  123 VAILEDVIDE--IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIG------KRSISLEVDGGVTSRNIKSLVQAGADLL  194 (224)
Q Consensus       123 ~~~i~~~l~~--~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~------~~~~~I~vDGGvn~~~i~~l~~~Gad~~  194 (224)
                      ++.....+..  .|.|++=+         +.++.++......+.+.      ..+..|++-||+|.+|+..+.+.|+|.+
T Consensus       194 ~~~~~~~~~~~~~~~IrlD~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SGgi~~~~i~~~a~~gvd~i  264 (281)
T cd00516         194 LEEALEAAKAGGADGIRLDS---------GSPEELDPAVLILKARAHLDGKGLPRVKIEASGGLDEENIRAYAETGVDVF  264 (281)
T ss_pred             HHHHHHHHHCCCCCEEEECC---------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             99999999549999999797---------995889999999999987632578977999979999999999996798999


Q ss_pred             EECHHHHCC
Q ss_conf             974266378
Q gi|254780975|r  195 VVGSSFFNQ  203 (224)
Q Consensus       195 V~Gsaif~~  203 (224)
                      .+|+.+.+.
T Consensus       265 ~iG~~~~~~  273 (281)
T cd00516         265 GVGTLLHSA  273 (281)
T ss_pred             EECCCCCCC
T ss_conf             938221788


No 224
>TIGR00262 trpA tryptophan synthase, alpha subunit; InterPro: IPR002028   Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan , :  L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H_2O  It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) , . The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25 0dentity to the 45-residue connector of the Saccharomyces cerevisiae polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism. ; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process.
Probab=95.55  E-value=0.16  Score=30.10  Aligned_cols=185  Identities=19%  Similarity=0.277  Sum_probs=126.3

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEE------CCEECCCCCC-----------CHHHHHHHHHC-CCCEEEEEEEE-----
Q ss_conf             8899999999999659989999734------2634584341-----------78999986412-56416856788-----
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVM------DGCFVPNISF-----------GADVIRSLRSY-SDSVFDCHLMI-----   71 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDIm------Dg~fvpn~~~-----------~~~~i~~i~~~-t~~~~dvHLMv-----   71 (224)
                      +...-.+.+..+.++|.|.+.+-+-      ||.-+..-..           ..+.++.+++. ++.|+-.-...     
T Consensus        22 ~~~~~~~~~~~~~~~g~~~~~~g~p~~dp~~dg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  101 (262)
T TIGR00262        22 DLETSLEILKTLVEAGADALELGVPFSDPLADGPTIQAADLRALRAGVNPEKAFELLKKVREKGPNIPIGLLTYYNLIFR  101 (262)
T ss_pred             CHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             25578999999986175100004642231124402335667887613537889999998874034341367777767875


Q ss_pred             EECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEEEEECCCCCCC-
Q ss_conf             512033676404776079997066421589998677649825998523334478998862014-028998306776533-
Q gi|254780975|r   72 SSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID-MILIMTVNPGFGGQQ-  149 (224)
Q Consensus        72 ~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D-~vliM~V~PG~~Gq~-  149 (224)
                      ..-+.+..++.++|.+-+.+.---...-...++.+++++...-....|.++-+.+..+..... ++.+++ ..|..|.. 
T Consensus       102 ~g~~~~~~~~~~~g~~~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~y~~~-~~g~~g~~~  180 (262)
T TIGR00262       102 LGVDEFYAKAKEAGVDGLLVPDLPLEEAGDLLEAAKKHGVDPIFLVAPTTPDERLKAIAEKSEGFVYLVS-VTGVTGARN  180 (262)
T ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEE-CCCCCCHHH
T ss_conf             0368999998861654022024660113578888876076336875488877788988875067133310-014310145


Q ss_pred             -CCCHHHHHHHHHHHHHHCCCCEEEEECC-CCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             -2201357789986543138652698158-99889999996799899974266378
Q gi|254780975|r  150 -LIESTIPKIRQAKALIGKRSISLEVDGG-VTSRNIKSLVQAGADLLVVGSSFFNQ  203 (224)
Q Consensus       150 -f~~~~l~kI~~l~~~~~~~~~~I~vDGG-vn~~~i~~l~~~Gad~~V~Gsaif~~  203 (224)
                       +.......++.++....   ..+.+--| -+.+.+..+...|++.+++||++.+.
T Consensus       181 ~~~~~~~~~~~~~~~~~~---~p~~~g~g~~~~~~~~~~~~~g~~g~~~g~~~~~~  233 (262)
T TIGR00262       181 RVESALEELLKRLKALSA---KPVLVGFGISKPEHVKELKDAGADGVIVGSALVKI  233 (262)
T ss_pred             HHHHHHHHHHHHHHHCCC---CCCHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             544568999998762044---43100146665688999874044530024789998


No 225
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=95.55  E-value=0.22  Score=29.17  Aligned_cols=130  Identities=21%  Similarity=0.350  Sum_probs=83.1

Q ss_pred             HHHHHHCCCC-CCEEEEECCCCC------------CHHHHHHHHHHCCCEE-EEEEEC-CCCHHHHHHHHHH--CCEEEE
Q ss_conf             3367640477-607999706642------------1589998677649825-998523-3344789988620--140289
Q gi|254780975|r   76 SHINIIADAG-CDIITFHPESSP------------HIRRSLRTIHAMGKKT-GVAINP-ETPVAILEDVIDE--IDMILI  138 (224)
Q Consensus        76 ~~i~~~~~~g-~d~i~~H~E~~~------------~~~~~i~~i~~~g~k~-Giai~p-~T~~~~i~~~l~~--~D~vli  138 (224)
                      .|...+.+++ +|++.+-.-+-+            .+.++++++++....+ .+=|.| .+.+..+...+..  +|.|.+
T Consensus       113 d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~  192 (310)
T COG0167         113 DYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIA  192 (310)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99999975077887999853899977466543999999999999863568659993888899999999999749858999


Q ss_pred             E-EE----------------E--CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECH
Q ss_conf             9-83----------------0--6776533220135778998654313865269815899-8899999967998999742
Q gi|254780975|r  139 M-TV----------------N--PGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGS  198 (224)
Q Consensus       139 M-~V----------------~--PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gs  198 (224)
                      - |+                +  =|.||.+..|.++.-|+++++.... ++.|.-=|||. .+.+.+...+||+.+=+||
T Consensus       193 ~NT~~~~~~i~~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~-~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~T  271 (310)
T COG0167         193 INTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGG-DIPIIGVGGIETGEDALEFILAGASAVQVGT  271 (310)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHHCCCCHHEEEE
T ss_conf             700366553012345556676777757510027899999999984289-9748984686969999999982975640411


Q ss_pred             HHHCC-CCH
Q ss_conf             66378-998
Q gi|254780975|r  199 SFFNQ-KGE  206 (224)
Q Consensus       199 aif~~-~d~  206 (224)
                      +++.. +..
T Consensus       272 al~~~Gp~i  280 (310)
T COG0167         272 ALIYKGPGI  280 (310)
T ss_pred             EEEEECCHH
T ss_conf             210208509


No 226
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=95.51  E-value=0.23  Score=29.08  Aligned_cols=144  Identities=17%  Similarity=0.234  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCEECCCCCC-------CHHHHHHHHH-CCCCEEEEEEEEEEC----------CHHHH
Q ss_conf             99999999996599899997342634584341-------7899998641-256416856788512----------03367
Q gi|254780975|r   18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISF-------GADVIRSLRS-YSDSVFDCHLMISSI----------DSHIN   79 (224)
Q Consensus        18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~-------~~~~i~~i~~-~t~~~~dvHLMv~~P----------~~~i~   79 (224)
                      -+.++++.+.++|+++||+|--+-.+.+....       .-...+.++. -.+..+-+|+.--|+          ...++
T Consensus       156 ~~~~Ei~~L~~aG~~~IQiDeP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~HvC~Gn~~~~~~~~~~y~~i~~  235 (332)
T cd03311         156 ALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAE  235 (332)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf             99999999998799889952835752678442689999999999998538988689998767887776545562789999


Q ss_pred             HHCCCCCCEEEEECCCCC-CHHHHHHHHHHCCCEEEEE-EECCCC----HHH----HHHHHHHCCEEEEEEEEC--CCCC
Q ss_conf             640477607999706642-1589998677649825998-523334----478----998862014028998306--7765
Q gi|254780975|r   80 IIADAGCDIITFHPESSP-HIRRSLRTIHAMGKKTGVA-INPETP----VAI----LEDVIDEIDMILIMTVNP--GFGG  147 (224)
Q Consensus        80 ~~~~~g~d~i~~H~E~~~-~~~~~i~~i~~~g~k~Gia-i~p~T~----~~~----i~~~l~~~D~vliM~V~P--G~~G  147 (224)
                      .+.+..+|.+.+-+-+.. ...+.++.+.. +.++|+. ++..++    .+.    ++..++.++.= -+.+.|  ||+-
T Consensus       236 ~l~~~~vd~~~lE~~~~r~~~~~~l~~~~~-~k~v~lGvid~~~~~vE~~eev~~rI~~a~~~v~~e-~l~~~pdCGf~~  313 (332)
T cd03311         236 YIFELDVDVFFLEYDNSRAGGLEPLKELPY-DKKVGLGVVDVKSPEVESPEEVKDRIEEAAKYVPLE-QLWVSPDCGFAT  313 (332)
T ss_pred             HHHHCCCCEEEEEECCCCCCCHHHHHHCCC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHH-HEEECCCCCCCC
T ss_conf             997189988999836887410189984899-987986688279999899999999999999738998-889868889882


Q ss_pred             CCCCCHHHHHHHHHHHH
Q ss_conf             33220135778998654
Q gi|254780975|r  148 QQLIESTIPKIRQAKAL  164 (224)
Q Consensus       148 q~f~~~~l~kI~~l~~~  164 (224)
                      .. ....+.|.+.+.+.
T Consensus       314 ~~-~~~a~~kl~~~~~~  329 (332)
T cd03311         314 RE-RGNALTKLENMVKA  329 (332)
T ss_pred             CC-CCHHHHHHHHHHHH
T ss_conf             87-21789999999985


No 227
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=95.42  E-value=0.24  Score=28.89  Aligned_cols=162  Identities=21%  Similarity=0.315  Sum_probs=92.6

Q ss_pred             HHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEE---------C-----CHHHHHHCCCCCCE
Q ss_conf             999996599899997342634584341789999864125641685678851---------2-----03367640477607
Q gi|254780975|r   23 ISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISS---------I-----DSHINIIADAGCDI   88 (224)
Q Consensus        23 i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~---------P-----~~~i~~~~~~g~d~   88 (224)
                      +....++|+|.+-  .+|+-=+-.+|=++-.++..++..+  +-+|.|+-.         +     ++-|+.+.++|++=
T Consensus        14 l~~A~~~GAdRiE--LC~~La~GG~TPSyG~~k~a~~~~~--ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~G   89 (241)
T COG3142          14 LLAAQAAGADRIE--LCDALAEGGLTPSYGVIKEAVELSK--IPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGVQG   89 (241)
T ss_pred             HHHHHHCCCCEEE--HHHCCCCCCCCCCHHHHHHHHHHCC--CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999983975110--2212035897887889999986369--85489970588870027589999999999999839983


Q ss_pred             EEEECCCCC---C---HHHHHHHHHHCCCEEEEEEE--CCCCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             999706642---1---58999867764982599852--33344789988620-140289983067765332201357789
Q gi|254780975|r   89 ITFHPESSP---H---IRRSLRTIHAMGKKTGVAIN--PETPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIR  159 (224)
Q Consensus        89 i~~H~E~~~---~---~~~~i~~i~~~g~k~Giai~--p~T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~  159 (224)
                      |.+-+=+.+   |   +++.+.+....+.-+--|+.  |+ |.+.++.+++. +.+||  |     +||+  .+.++-..
T Consensus        90 VV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d-~~~ale~li~~Gv~RIL--T-----sGg~--~sa~eg~~  159 (241)
T COG3142          90 VVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPD-PLEALEQLIELGVERIL--T-----SGGK--ASALEGLD  159 (241)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHCCC-HHHHHHHHHHCCCCEEE--C-----CCCC--CCHHHHHH
T ss_conf             7985466898638899999998706876243166563379-99999999976973786--4-----7886--75556079


Q ss_pred             HHHHHHHCC--CCEEEEECCCCHHHHHHH-HHCCCCEEEECH
Q ss_conf             986543138--652698158998899999-967998999742
Q gi|254780975|r  160 QAKALIGKR--SISLEVDGGVTSRNIKSL-VQAGADLLVVGS  198 (224)
Q Consensus       160 ~l~~~~~~~--~~~I~vDGGvn~~~i~~l-~~~Gad~~V~Gs  198 (224)
                      .++++....  .+.|.+-|||+.+|+..+ ...|+.-+=++.
T Consensus       160 ~l~~li~~a~gri~Im~GaGV~~~N~~~l~~~tg~~e~H~s~  201 (241)
T COG3142         160 LLKRLIEQAKGRIIIMAGAGVRAENIAELVLLTGVTEVHGSA  201 (241)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHCC
T ss_conf             999999983698799867988989999999850803200024


No 228
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.36  E-value=0.1  Score=31.34  Aligned_cols=167  Identities=20%  Similarity=0.331  Sum_probs=103.2

Q ss_pred             ECCEECCCCCCC----HHHHHHHHHC--CCCEEEEEEEEEE-------CCHH---HHHHCCCCCCEEEEECCC--C----
Q ss_conf             426345843417----8999986412--5641685678851-------2033---676404776079997066--4----
Q gi|254780975|r   39 MDGCFVPNISFG----ADVIRSLRSY--SDSVFDCHLMISS-------IDSH---INIIADAGCDIITFHPES--S----   96 (224)
Q Consensus        39 mDg~fvpn~~~~----~~~i~~i~~~--t~~~~dvHLMv~~-------P~~~---i~~~~~~g~d~i~~H~E~--~----   96 (224)
                      -|...++.++|+    -...+.+++.  ...|+-|-+.-+.       .+.|   ++++... +|++++-.-+  +    
T Consensus       105 ~~~aliNr~GfnN~G~~~~~~~L~~~~~~~~~lGvnIg~nk~t~~e~~~~Dy~~~~~~l~~~-aDy~~INiSsPNT~glr  183 (336)
T PRK05286        105 EDEALINRMGFNNEGADALAERLKKAKPYKGPLGINIGKNKDTPLEDAVDDYLICLRKLYPY-ADYFTVNISSPNTPGLR  183 (336)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCC
T ss_conf             77637850577986899999999850567886589976237884166899999999998263-77899975689986520


Q ss_pred             -----CCHHHHHHHHHHC----CCE--EEEEEECCCCHHHHHHHHHH-----CCEEEEE-E------------EEC-CCC
Q ss_conf             -----2158999867764----982--59985233344789988620-----1402899-8------------306-776
Q gi|254780975|r   97 -----PHIRRSLRTIHAM----GKK--TGVAINPETPVAILEDVIDE-----IDMILIM-T------------VNP-GFG  146 (224)
Q Consensus        97 -----~~~~~~i~~i~~~----g~k--~Giai~p~T~~~~i~~~l~~-----~D~vliM-~------------V~P-G~~  146 (224)
                           +.+.+.++.+++.    +.+  +=+-|.|+.+-+.+..+++.     +|.|.+- |            .+. |-|
T Consensus       184 ~lq~~~~L~~ll~~v~~~~~~~~~~~PI~vKisPDl~~~~l~~i~~~~~~~~idGii~tNTt~~r~~l~~~~~~~~GGLS  263 (336)
T PRK05286        184 DLQAGEALDELLAALKEAQAELGKYVPLLLKIAPDLSDEELDDIADLALEHGIDGIIATNTTLDRSGLEGPNAEEAGGLS  263 (336)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             00466999999999999998437888648832888887899999999998198689995886766445665556668746


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHH-HHCCCCHH
Q ss_conf             53322013577899865431386526981589-988999999679989997426-63789989
Q gi|254780975|r  147 GQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSS-FFNQKGEI  207 (224)
Q Consensus       147 Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsa-if~~~d~~  207 (224)
                      |.+..+.+++.++++++..+. .+.|.-=||| +.+.+.+...+||+.+=+.|+ +|+.+...
T Consensus       264 G~pl~~~s~~~v~~~~~~~~~-~~pIIgvGGI~s~~da~~~i~aGAslVQlyTgliy~GP~lv  325 (336)
T PRK05286        264 GRPLFERSTEVIRRLYKELGG-RLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLV  325 (336)
T ss_pred             CHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHH
T ss_conf             406789999999999997399-97099989989999999999869968874167872190799


No 229
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393   Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , .   Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=95.34  E-value=0.26  Score=28.72  Aligned_cols=121  Identities=20%  Similarity=0.317  Sum_probs=72.5

Q ss_pred             EEEEEEEE---C-CHHHHHHCCC-C---------CCEEEE---ECCCCCCHHHHHHHHHHCCCEEEEEEECCCC---HHH
Q ss_conf             85678851---2-0336764047-7---------607999---7066421589998677649825998523334---478
Q gi|254780975|r   66 DCHLMISS---I-DSHINIIADA-G---------CDIITF---HPESSPHIRRSLRTIHAMGKKTGVAINPETP---VAI  125 (224)
Q Consensus        66 dvHLMv~~---P-~~~i~~~~~~-g---------~d~i~~---H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~---~~~  125 (224)
                      .+++.--.   | .++++||+=. |         -|+|-+   |.-....+++.++..|+.   ++.+..-+-+   +|+
T Consensus       122 ~~~i~dTRKTTPGLR~~EKyAVr~GGG~nHR~~LsDavmiKDNHi~~~Gs~~~Av~~aR~~---~~~~~kiEVEVenlE~  198 (276)
T TIGR00078       122 KVRIADTRKTTPGLRLLEKYAVRVGGGDNHRLGLSDAVMIKDNHIAAAGSIEKAVKRARAA---LPFAKKIEVEVENLEE  198 (276)
T ss_pred             CEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECEEECCCCHHHHHHHHHHH---CCCCCEEEEEECCHHH
T ss_conf             3389985257874301023135535885786888773897502066068989999999984---8998079986289899


Q ss_pred             HHHHH-HHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             99886-20140289983067765332201357789986543138--652698158998899999967998999742663
Q gi|254780975|r  126 LEDVI-DEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKR--SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       126 i~~~l-~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~--~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif  201 (224)
                      +..-+ .-+|.||+         -.|.|..+   ++.-++++.+  ++.+|+=|||+.+|++.+...|+|.+-+|.-.-
T Consensus       199 a~eA~~AGADiImL---------DNm~p~~~---~~av~~~~~~~p~~~~EaSGGitl~n~~~ya~~gVD~IS~G~lTh  265 (276)
T TIGR00078       199 AEEAAEAGADIIML---------DNMKPEEI---KEAVELLKGRNPNVLVEASGGITLDNIEEYAETGVDVISSGALTH  265 (276)
T ss_pred             HHHHHHCCCCEEEC---------CCCCHHHH---HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCEEECCCHHH
T ss_conf             99999709959980---------69894799---999999970299089998369987899998408975883274112


No 230
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=95.18  E-value=0.15  Score=30.15  Aligned_cols=95  Identities=17%  Similarity=0.268  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCC-H-HHHHHHHHHHHHHCCC---CEEE
Q ss_conf             589998677649825998523334478998862014028998306776533220-1-3577899865431386---5269
Q gi|254780975|r   99 IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIE-S-TIPKIRQAKALIGKRS---ISLE  173 (224)
Q Consensus        99 ~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~-~-~l~kI~~l~~~~~~~~---~~I~  173 (224)
                      +.+.++-++..|-+.. ++..+|+=+....++...         +.+. ++..+ . .-.-++++|+.+++.+   ++|.
T Consensus       222 i~~al~va~~~g~~L~-gVRLDTsg~l~d~~~~~~---------~~~~-~~~~~~Gv~~~li~~vR~~LD~aG~~~vKIv  290 (355)
T PRK07188        222 ITDALKVAREFGDKLK-GVRVDTSKNLIDKYFIRN---------PEVL-GTFDPYGVNPYLIFALRKALDENGGKHVKII  290 (355)
T ss_pred             HHHHHHHHHHHCCCCC-EEEECCCCCHHHCCCCCC---------CCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             9999999998386677-899778762222000112---------2345-6522257489999999999976799871799


Q ss_pred             EECCCCHHHHHHHHHCCC--CEEEECHHHHCCC
Q ss_conf             815899889999996799--8999742663789
Q gi|254780975|r  174 VDGGVTSRNIKSLVQAGA--DLLVVGSSFFNQK  204 (224)
Q Consensus       174 vDGGvn~~~i~~l~~~Ga--d~~V~Gsaif~~~  204 (224)
                      +-||++.+.+..+.++|+  |.+=+||+|++.+
T Consensus       291 aSgglde~~I~~l~~~gapID~fGVGt~l~~~~  323 (355)
T PRK07188        291 VSSGFDEKKIKEFEKQNVPVDIYGVGSSLLKIN  323 (355)
T ss_pred             EECCCCHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             968999999999997799701895067667887


No 231
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=94.91  E-value=0.34  Score=27.93  Aligned_cols=194  Identities=13%  Similarity=0.233  Sum_probs=108.6

Q ss_pred             CCCCEEECHHHHCCCHHHHHHHHHHHHHCCCCEE-EEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECC----
Q ss_conf             9798188170632588999999999996599899-99734263458434178999986412564168567885120----
Q gi|254780975|r    1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQI-HFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSID----   75 (224)
Q Consensus         1 M~k~~~IspSil~~d~~~l~~~i~~l~~~~~d~i-HiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~----   75 (224)
                      |.|++-++===|..+.....+-++.+.+. .... ++|+   ..+|.+++=.+..+.++ -++    +++-.+|..    
T Consensus         1 MrkkiIiaNWKmn~~~~~~~~~~~~l~~~-~~~~~~~~v---~i~Pp~~~L~~~~~~~~-~~~----i~igaQn~~~~~~   71 (251)
T PRK00042          1 MRKPIIAGNWKMNKTLAEAKELVEELAAL-LPDADGVEV---AVAPPFTYLSSVKEALE-GSN----LKLGAQNVHFEDS   71 (251)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCCEE---EEECCHHHHHHHHHHHC-CCC----CEEEEEECCCCCC
T ss_conf             99888999735488999999999999974-666689879---99799999999999827-999----6799725787777


Q ss_pred             -HH-----HHHHCCCCCCEEEE--------ECCCCCCHHHHHHHHHHCCCEEEEEEECC-------CCHH----HHHHHH
Q ss_conf             -33-----67640477607999--------70664215899986776498259985233-------3447----899886
Q gi|254780975|r   76 -SH-----INIIADAGCDIITF--------HPESSPHIRRSLRTIHAMGKKTGVAINPE-------TPVA----ILEDVI  130 (224)
Q Consensus        76 -~~-----i~~~~~~g~d~i~~--------H~E~~~~~~~~i~~i~~~g~k~Giai~p~-------T~~~----~i~~~l  130 (224)
                       -|     .+++.+.|++++.+        |-|+.+.+.+-+..+.+.|..+-+.+.-.       ...+    .+...+
T Consensus        72 Ga~TGeiSa~mL~d~G~~yviiGHSERR~~f~Et~~~i~~K~~~al~~~l~pI~CIGE~~~~r~~g~~~~~l~~Ql~~~l  151 (251)
T PRK00042         72 GAFTGEISPAMLKELGVKYVIIGHSERRTYFGETDELVNKKVKAALKHGLTPILCVGETLEEREAGKTEEVVARQLEAAL  151 (251)
T ss_pred             CCCCCCCCHHHHHHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHH
T ss_conf             67757560999997599979975588776469987999999999998699289993673886546787899999999999


Q ss_pred             HHCCE----EEEEEEEC----CCCCCCCCCHHHHHH-HHHHHHHH----C--CCCEEEEECCCCHHHHHHHHH-CCCCEE
Q ss_conf             20140----28998306----776533220135778-99865431----3--865269815899889999996-799899
Q gi|254780975|r  131 DEIDM----ILIMTVNP----GFGGQQLIESTIPKI-RQAKALIG----K--RSISLEVDGGVTSRNIKSLVQ-AGADLL  194 (224)
Q Consensus       131 ~~~D~----vliM~V~P----G~~Gq~f~~~~l~kI-~~l~~~~~----~--~~~~I~vDGGvn~~~i~~l~~-~Gad~~  194 (224)
                      +.++.    =++..=+|    | +|+.-.++-++.+ +.+|+.+.    .  .++.|---|+||.+|+.++.. .++|-+
T Consensus       152 ~~~~~~~~~~iiIAYEPvWAIG-TG~~as~~~i~~~~~~Ir~~l~~~~~~~~~~i~IlYGGSVn~~N~~~i~~~~~vDG~  230 (251)
T PRK00042        152 AGLGAEDFANLVIAYEPVWAIG-TGKTATPEQAQEVHAFIRKVLAELYAEVAEKVRILYGGSVKPDNAAELFAQPDIDGA  230 (251)
T ss_pred             HCCCHHHCCCEEEEECCHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCEE
T ss_conf             6689877053599967577507-999999999999999999999986052305753887177899899999668899979


Q ss_pred             EECHHHHCCC
Q ss_conf             9742663789
Q gi|254780975|r  195 VVGSSFFNQK  204 (224)
Q Consensus       195 V~Gsaif~~~  204 (224)
                      -+|+|=.+.+
T Consensus       231 LVGgASL~~~  240 (251)
T PRK00042        231 LVGGASLKAE  240 (251)
T ss_pred             EECHHHCCHH
T ss_conf             8515867989


No 232
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.88  E-value=0.35  Score=27.89  Aligned_cols=122  Identities=21%  Similarity=0.327  Sum_probs=75.7

Q ss_pred             HHHHHHCCCC--CCEEEEECCC--CCCHHHHHHHHHHCCCEE-EEEEECCCCHHHHHHHHH-HCCEEEEEEEECCC----
Q ss_conf             3367640477--6079997066--421589998677649825-998523334478998862-01402899830677----
Q gi|254780975|r   76 SHINIIADAG--CDIITFHPES--SPHIRRSLRTIHAMGKKT-GVAINPETPVAILEDVID-EIDMILIMTVNPGF----  145 (224)
Q Consensus        76 ~~i~~~~~~g--~d~i~~H~E~--~~~~~~~i~~i~~~g~k~-Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~----  145 (224)
                      +.++.+.+++  ++.|++-..+  .....+.++++|+.--.. -+|=|-.|+ +..+.+++ -+|.|.+ ++-||-    
T Consensus       100 ~~i~~l~~~~~~~~~i~iDvAhG~~~~~~~~i~~ik~~~~~~~iiaGNVaT~-e~~~~L~~~Gad~VkV-GIG~Gs~CTT  177 (326)
T PRK05458        100 DFIDQLAAEGLTPEYITIDIAHGHSDSVINMIKHIKKHLPETFVIAGNVGTP-EAVRELENAGADATKV-GIGPGKVCIT  177 (326)
T ss_pred             HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCH-HHHHHHHHCCCCEEEE-CCCCCCCCCC
T ss_conf             9999998569997779998056442899999999998789983996543189-9999999749999996-7779875203


Q ss_pred             -----CCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             -----6533-220135778998654313865269815899-88999999679989997426637899
Q gi|254780975|r  146 -----GGQQ-LIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       146 -----~Gq~-f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                           -|-| +   .+.-|.+-.+..   ...|..|||++ .-.+.+...+|||.+-+||.+-+.++
T Consensus       178 R~~tGvG~p~~---q~sai~~ca~~~---~~~iiaDGGi~~~GDi~KAla~GAd~VM~G~~~Ag~~E  238 (326)
T PRK05458        178 KIKTGFGTGGW---QLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEE  238 (326)
T ss_pred             CCCCCCCCCHH---HHHHHHHHHHHH---CCCEEEECCCCCCCHHHHHHHCCCCEEEECCHHCCCCC
T ss_conf             50135477589---999999999972---79779736858747899998648988986712237777


No 233
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=94.80  E-value=0.37  Score=27.75  Aligned_cols=165  Identities=16%  Similarity=0.205  Sum_probs=102.8

Q ss_pred             HHHHHHHHCCCCEEEEEEECCEEC-----CCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCC
Q ss_conf             999999965998999973426345-----843417899998641256416856788512033676404776079997066
Q gi|254780975|r   21 EEISNITKAGAKQIHFDVMDGCFV-----PNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPES   95 (224)
Q Consensus        21 ~~i~~l~~~~~d~iHiDImDg~fv-----pn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~   95 (224)
                      +-++.|.+.|++.|-+    |.||     |.+.=..+.+..+++.....+..  .+-+ .+-++...++|++.+.+-.-+
T Consensus        30 ~ia~~L~~~Gv~~IEv----gsfvspk~vP~~~d~~ev~~~i~~~~~~~~~~--l~~n-~~g~~~A~~~g~~~i~i~~~~  102 (287)
T PRK05692         30 ALIDRLSAAGLSYIEV----ASFVSPKWVPQMADAAEVMAGIQRRPGVTYAA--LTPN-LKGLEAALAAGADEVAVFASA  102 (287)
T ss_pred             HHHHHHHHCCCCEEEE----CCCCCCCCCHHHCCHHHHHHHHHCCCCCEEEE--ECCC-HHHHHHHHHCCCCEEEEEEEC
T ss_conf             9999999849999996----68778230213167999998764067967866--4364-042799997798989999741


Q ss_pred             ----------------CCCHHHHHHHHHHCCCEEEEEEE-----C---CCCHHHHHHHHHH-----CCEEEEEEEECCCC
Q ss_conf             ----------------42158999867764982599852-----3---3344789988620-----14028998306776
Q gi|254780975|r   96 ----------------SPHIRRSLRTIHAMGKKTGVAIN-----P---ETPVAILEDVIDE-----IDMILIMTVNPGFG  146 (224)
Q Consensus        96 ----------------~~~~~~~i~~i~~~g~k~Giai~-----p---~T~~~~i~~~l~~-----~D~vliM~V~PG~~  146 (224)
                                      .+.+.+.++++++.|.++-..+.     |   .++.+.+..++..     +|.|.+    +---
T Consensus       103 Sd~h~~~nl~~t~~e~l~~~~~~i~~a~~~g~~v~~~i~~afg~p~~~~~~~~~l~~~~~~~~~~Ga~~I~l----aDT~  178 (287)
T PRK05692        103 SEAFSQKNINCSIAESLARFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCDEISL----GDTI  178 (287)
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCC
T ss_conf             799999874799999999999999999976987999874013676468648999999999998579978544----7655


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf             53322013577899865431386--526981589988999999679989997
Q gi|254780975|r  147 GQQLIESTIPKIRQAKALIGKRS--ISLEVDGGVTSRNIKSLVQAGADLLVV  196 (224)
Q Consensus       147 Gq~f~~~~l~kI~~l~~~~~~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~  196 (224)
                      |..-=..+.+.++.+++.++...  +.+.=|-|.-..|.-...++||+.+=+
T Consensus       179 G~a~P~~v~~~i~~v~~~~~~~~i~~H~Hnd~Gma~AN~laAv~aGa~~vd~  230 (287)
T PRK05692        179 GVGTPGQVRRVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDA  230 (287)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             6669999999999999866887235674487306999999999809998988


No 234
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=94.70  E-value=0.35  Score=27.91  Aligned_cols=171  Identities=16%  Similarity=0.172  Sum_probs=98.2

Q ss_pred             HHHHHHHHCCCCEEE-EEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCH
Q ss_conf             999999965998999-9734263458434178999986412564168567885120336764047760799970664215
Q gi|254780975|r   21 EEISNITKAGAKQIH-FDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHI   99 (224)
Q Consensus        21 ~~i~~l~~~~~d~iH-iDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~   99 (224)
                      +..+...+.|+|-+- +||.-.+-  +-..-.+.+++..+...+|+-|-==+... .-++++..+|+|-|++-.-+..+|
T Consensus        34 elA~~Y~e~GADElvFlDItAs~~--gr~~~~~vv~~~A~~vfiPltVGGGI~s~-eD~~~ll~aGADKVSINsaAv~~p  110 (256)
T COG0107          34 ELAKRYNEEGADELVFLDITASSE--GRETMLDVVERVAEQVFIPLTVGGGIRSV-EDARKLLRAGADKVSINSAAVKDP  110 (256)
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCC--CCCCHHHHHHHHHHHCEEEEEECCCCCCH-HHHHHHHHCCCCEEEECHHHHCCH
T ss_conf             999999775997699986225656--66207999999973030324754775888-999999976997465284675095


Q ss_pred             HHHHHHHHHCCCEE-EEEEEC--------------------CCCHHHHHHHHHH----CCEEEEEEEECCCCCCCCCCHH
Q ss_conf             89998677649825-998523--------------------3344789988620----1402899830677653322013
Q gi|254780975|r  100 RRSLRTIHAMGKKT-GVAINP--------------------ETPVAILEDVIDE----IDMILIMTVNPGFGGQQLIEST  154 (224)
Q Consensus       100 ~~~i~~i~~~g~k~-Giai~p--------------------~T~~~~i~~~l~~----~D~vliM~V~PG~~Gq~f~~~~  154 (224)
                      +-+-+.....|.++ -++|.+                    .|.++.++.-...    .--||+-+.+---..+.|.-..
T Consensus       111 ~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~eWa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l  190 (256)
T COG0107         111 ELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLEL  190 (256)
T ss_pred             HHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH
T ss_conf             99999999838812999987554268998767999668975688579999999997388548786355656536757999


Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCC-CCEEEECHHH
Q ss_conf             577899865431386526981589-988999999679-9899974266
Q gi|254780975|r  155 IPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAG-ADLLVVGSSF  200 (224)
Q Consensus       155 l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~G-ad~~V~Gsai  200 (224)
                      +.+|++      .-++++..-||. +.++..+....| ||-.-..|-.
T Consensus       191 ~~~v~~------~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiF  232 (256)
T COG0107         191 TRAVRE------AVNIPVIASGGAGKPEHFVEAFTEGKADAALAASIF  232 (256)
T ss_pred             HHHHHH------HCCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             999996------488788911898968899999981570088764433


No 235
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=94.67  E-value=0.39  Score=27.56  Aligned_cols=145  Identities=15%  Similarity=0.286  Sum_probs=85.6

Q ss_pred             HHHCCCCE-EEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHH-HHHCC--CEEEEEEEC-------CCCHHH
Q ss_conf             64125641-68567885120336764047760799970664215899986-77649--825998523-------334478
Q gi|254780975|r   57 LRSYSDSV-FDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRT-IHAMG--KKTGVAINP-------ETPVAI  125 (224)
Q Consensus        57 i~~~t~~~-~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~-i~~~g--~k~Giai~p-------~T~~~~  125 (224)
                      .....+.+ ++-|+--.=..+.+...+.. +|+  +|.=-...+..-++. ....+  .++-|=+|-       +++++.
T Consensus        65 ~~~l~~~~~i~WHfIG~LQsNK~k~v~~~-~~~--ihSlDr~klA~~l~kra~~~~~~l~v~iQVNi~~E~sK~G~~~~e  141 (228)
T COG0325          65 IEALKDLPDIEWHFIGPLQSNKVKLVAEN-FDW--IHSLDRLKLAKELNKRALELPKPLNVLIQVNISGEESKSGVPPEE  141 (228)
T ss_pred             HHHCCCCCCEEEEEECHHHHHHHHHHHHH-CCE--EEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHH
T ss_conf             99647678817999641135679999842-423--333077999999998997379886389999438862337999899


Q ss_pred             HHHHHHH------CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCHHHHHHHHHCCCCEEEECH
Q ss_conf             9988620------140289983067765332201357789986543138652-698158998899999967998999742
Q gi|254780975|r  126 LEDVIDE------IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS-LEVDGGVTSRNIKSLVQAGADLLVVGS  198 (224)
Q Consensus       126 i~~~l~~------~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~-I~vDGGvn~~~i~~l~~~Gad~~V~Gs  198 (224)
                      +..++..      +...-+||+-|=-....-....+.+++++++-..+.+.. -+.-=|.+ ...+..+++|++.+=+||
T Consensus       142 ~~~~~~~~~~~~~L~l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMGMS-~D~e~AI~~GaT~VRIGt  220 (228)
T COG0325         142 LDELAQEVQELPNLELRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAKYPPIDELSMGMS-NDYEIAIAEGATMVRIGT  220 (228)
T ss_pred             HHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC-CCHHHHHHCCCCEEEECH
T ss_conf             9999999974899767577741799899799999999999999999874589785268676-259999985998899707


Q ss_pred             HHHCCCC
Q ss_conf             6637899
Q gi|254780975|r  199 SFFNQKG  205 (224)
Q Consensus       199 aif~~~d  205 (224)
                      +||+..+
T Consensus       221 aiFg~r~  227 (228)
T COG0325         221 AIFGARD  227 (228)
T ss_pred             HHHCCCC
T ss_conf             8618789


No 236
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP,  present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=94.63  E-value=0.14  Score=30.34  Aligned_cols=61  Identities=25%  Similarity=0.392  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf             3577899865431386526981589-9889999996799899974266378998999999999
Q gi|254780975|r  154 TIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND  215 (224)
Q Consensus       154 ~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~  215 (224)
                      .++.+++.+++ .+..+---.-||| +.-....+-..|+|-+-+||.||++.||...++.+.+
T Consensus       182 p~elv~~v~~~-grLPVvnFaAGGiATPADAALmMqLG~dGVFVGSGIFKS~dP~krA~AIV~  243 (283)
T cd04727         182 PYELVKETAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVE  243 (283)
T ss_pred             CHHHHHHHHHH-CCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             58999999997-897636642678588377999997289878877654578999999999999


No 237
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=94.57  E-value=0.41  Score=27.40  Aligned_cols=143  Identities=15%  Similarity=0.174  Sum_probs=80.2

Q ss_pred             ECCHHHHHHCCCCCCEEEEECCCCCC---HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH--HCCEEEEEEEECC---
Q ss_conf             12033676404776079997066421---589998677649825998523334478998862--0140289983067---
Q gi|254780975|r   73 SIDSHINIIADAGCDIITFHPESSPH---IRRSLRTIHAMGKKTGVAINPETPVAILEDVID--EIDMILIMTVNPG---  144 (224)
Q Consensus        73 ~P~~~i~~~~~~g~d~i~~H~E~~~~---~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~--~~D~vliM~V~PG---  144 (224)
                      +|.++...+.++|||-||+|......   ..++....+.....+-+=.+|.   +.+..+..  ..+++.+.-..|+   
T Consensus        22 d~~~~a~~~~~~GadgITvHlR~DrRHI~~~Dv~~l~~~~~~~lNlE~a~~---~emi~ia~~~kP~~vtLVPe~r~elT   98 (234)
T cd00003          22 DPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAPT---EEMLEIALEVKPHQVTLVPEKREELT   98 (234)
T ss_pred             CHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCCC---HHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf             999999999983998589524887666754579999986585546612793---89999999849987898788878641


Q ss_pred             -CCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHHCCCCEEEECHHHH-CCCCHHHHHHHHHHHHHHH
Q ss_conf             -765332201357789986543138652--698158998899999967998999742663-7899899999999999978
Q gi|254780975|r  145 -FGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSLVQAGADLLVVGSSFF-NQKGEISYAKRLNDLKKSA  220 (224)
Q Consensus       145 -~~Gq~f~~~~l~kI~~l~~~~~~~~~~--I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif-~~~d~~~~~~~l~~l~~~a  220 (224)
                       -+|+.+.. -.++++.+-+.+.+.++.  +-+|=.  .+.+....+.|||.+=.=+.=| +..+..+..+.+..++++|
T Consensus        99 TegGld~~~-~~~~L~~~i~~lk~~~IrvSLFIDPd--~~qi~~a~~~Gad~VElhTG~Ya~a~~~~~~~~el~~i~~aa  175 (234)
T cd00003          99 TEGGLDVAG-QAEKLKPIIERLKDAGIRVSLFIDPD--PEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAKAA  175 (234)
T ss_pred             CCCCCCCCC-HHHHHHHHHHHHHHCCCEEEEEECCC--HHHHHHHHHHCCCEEEEECHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             788926654-78899999999986598279972798--789999998493999982478786348103999999999999


Q ss_pred             H
Q ss_conf             6
Q gi|254780975|r  221 L  221 (224)
Q Consensus       221 ~  221 (224)
                      .
T Consensus       176 ~  176 (234)
T cd00003         176 K  176 (234)
T ss_pred             H
T ss_conf             9


No 238
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=94.57  E-value=0.41  Score=27.40  Aligned_cols=147  Identities=18%  Similarity=0.312  Sum_probs=99.1

Q ss_pred             HHHHHHHHCCCCE------------EEEEEEE---EECCHHHHHHCCC-CCCEEEEECCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf             9999864125641------------6856788---5120336764047-7607999706642158999867764982599
Q gi|254780975|r   52 DVIRSLRSYSDSV------------FDCHLMI---SSIDSHINIIADA-GCDIITFHPESSPHIRRSLRTIHAMGKKTGV  115 (224)
Q Consensus        52 ~~i~~i~~~t~~~------------~dvHLMv---~~P~~~i~~~~~~-g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Gi  115 (224)
                      +.+++++..+..|            +-+.+|+   ..-+..++-+.+. |.-.++++.-.  .+..++..+++.|.++..
T Consensus        55 ~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~--~~~~~i~~~~~~g~~v~~  132 (336)
T COG2070          55 AEIRKIRALTDKPFVANNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGA--PPAEFVARLKAAGIKVIH  132 (336)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEECCCC--CCHHHHHHHHHCCCEEEE
T ss_conf             999999986348420135455555531103534655345631225642897679715899--958899999974985898


Q ss_pred             EEECCCCHHHHHHHHH-HCCEEEEEEEEC-CCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCC
Q ss_conf             8523334478998862-014028998306-77653-3220135778998654313865269815899-889999996799
Q gi|254780975|r  116 AINPETPVAILEDVID-EIDMILIMTVNP-GFGGQ-QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGA  191 (224)
Q Consensus       116 ai~p~T~~~~i~~~l~-~~D~vliM~V~P-G~~Gq-~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Ga  191 (224)
                      .+   |...+-..... =+|.|..-+-+- |..|. ...+.++.-+.++++.+..  +.+..-|||- .+-+.-....||
T Consensus       133 ~v---~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~--iPViAAGGI~dg~~i~AAlalGA  207 (336)
T COG2070         133 SV---ITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG--IPVIAAGGIADGRGIAAALALGA  207 (336)
T ss_pred             EE---CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHHHCC
T ss_conf             50---88999999981799889943776778689988773188899999998548--97898768688699999998441


Q ss_pred             CEEEECHHHHCCCC
Q ss_conf             89997426637899
Q gi|254780975|r  192 DLLVVGSSFFNQKG  205 (224)
Q Consensus       192 d~~V~Gsaif~~~d  205 (224)
                      +-+..||...-.++
T Consensus       208 ~gVq~GT~Fl~t~E  221 (336)
T COG2070         208 DGVQMGTRFLATKE  221 (336)
T ss_pred             HHHHHHHHHHCCCC
T ss_conf             68554125421403


No 239
>PRK04180 pyridoxine biosynthesis protein; Provisional
Probab=94.56  E-value=0.13  Score=30.63  Aligned_cols=61  Identities=23%  Similarity=0.361  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf             3577899865431386-5269815899889999996799899974266378998999999999
Q gi|254780975|r  154 TIPKIRQAKALIGKRS-ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND  215 (224)
Q Consensus       154 ~l~kI~~l~~~~~~~~-~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~  215 (224)
                      .++.+++.+++ .+.. +....-|=-+.-....+-..|+|-+-+||.||++.||...++.+.+
T Consensus       191 p~elv~~v~~~-grLPVvnFaAGGiATPADAALmMqLG~dGVFVGSGIFKS~dP~~rA~AIV~  252 (293)
T PRK04180        191 PYELVKEVARL-GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGNPEKRAKAIVE  252 (293)
T ss_pred             CHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             68999999984-887625532577578056999987178746754543467998899999999


No 240
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain.  Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=94.50  E-value=0.43  Score=27.31  Aligned_cols=124  Identities=15%  Similarity=0.264  Sum_probs=71.0

Q ss_pred             HHCCCCCCEEEEECCCC---------------------------CCHHHHHHHHHHC-C--CEEEEEEECCC--------
Q ss_conf             64047760799970664---------------------------2158999867764-9--82599852333--------
Q gi|254780975|r   80 IIADAGCDIITFHPESS---------------------------PHIRRSLRTIHAM-G--KKTGVAINPET--------  121 (224)
Q Consensus        80 ~~~~~g~d~i~~H~E~~---------------------------~~~~~~i~~i~~~-g--~k~Giai~p~T--------  121 (224)
                      ...++|.|-|-+|.-+.                           .-+.++++.+|+. |  .-+|+=+++..        
T Consensus       158 rA~~AGfDgVEIH~ah~GyLl~qFlSp~~N~RtDeYGGSlenR~Rf~~Evi~aVR~~vg~d~~v~~R~s~~~~~~~~~~g  237 (382)
T cd02931         158 IAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQG  237 (382)
T ss_pred             HHHHCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
T ss_conf             99984999899624530358998548735898864589878856189999999999709887389996563345665457


Q ss_pred             --C----------HHHH---HHHHHH--CCEEEEEEE---------ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             --4----------4789---988620--140289983---------0677653322013577899865431386526981
Q gi|254780975|r  122 --P----------VAIL---EDVIDE--IDMILIMTV---------NPGFGGQQLIESTIPKIRQAKALIGKRSISLEVD  175 (224)
Q Consensus       122 --~----------~~~i---~~~l~~--~D~vliM~V---------~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vD  175 (224)
                        |          ++..   .+++..  +|++.+=+-         .|-+..+.+..   ...+.+|+   .-++.+.+=
T Consensus       238 ~~~~~~~~~~g~~l~e~~~~~~~l~~~G~D~l~vs~g~~~~~~~~~~~~~~~~g~~~---~~a~~ik~---~~~iPvi~~  311 (382)
T cd02931         238 ALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYL---PYCKALKE---VVDVPVIMA  311 (382)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHCCCCCCCCCCCCCH---HHHHHHHH---HCCCCEEEE
T ss_conf             885777888763599999999999983988896477742110103797546763148---99999998---739988996


Q ss_pred             CCCC-HHHHHHHHHCC-CCEEEECHHHHCCCCHHHH
Q ss_conf             5899-88999999679-9899974266378998999
Q gi|254780975|r  176 GGVT-SRNIKSLVQAG-ADLLVVGSSFFNQKGEISY  209 (224)
Q Consensus       176 GGvn-~~~i~~l~~~G-ad~~V~Gsaif~~~d~~~~  209 (224)
                      ||++ .+.+.++++.| +|.+..|.++..+||....
T Consensus       312 G~i~~p~~ae~~l~~g~aD~V~~gR~~iadP~~v~K  347 (382)
T cd02931         312 GRMEDPELASEAINEGIADMISLGRPLLADPDVVNK  347 (382)
T ss_pred             CCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHH
T ss_conf             896999999999986996543622898869359999


No 241
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=94.45  E-value=0.16  Score=30.06  Aligned_cols=92  Identities=21%  Similarity=0.253  Sum_probs=54.0

Q ss_pred             HHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             7899886201402899830677653322013577899865431386526981589-988999999679989997426637
Q gi|254780975|r  124 AILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       124 ~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      .....+-..+..+.-|+-+-=+.--+-....++.+++.+++- +..+---.-||| +.-....+-..|+|-+-+||.||+
T Consensus       164 rHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~g-rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK  242 (296)
T COG0214         164 RHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK  242 (296)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCC
T ss_conf             999999999999873688899999987578299999999839-8874742256768816799999818984786564337


Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             89989999999999
Q gi|254780975|r  203 QKGEISYAKRLNDL  216 (224)
Q Consensus       203 ~~d~~~~~~~l~~l  216 (224)
                      +.||...++.+.+-
T Consensus       243 S~~P~~~A~AIV~A  256 (296)
T COG0214         243 SSNPEKRAKAIVEA  256 (296)
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             89989999999999


No 242
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=94.45  E-value=0.094  Score=31.52  Aligned_cols=172  Identities=17%  Similarity=0.259  Sum_probs=109.1

Q ss_pred             HHHHHHCCCCEEEEEEECC-EECCCCCC----CHHHHHHHHH-CCCCEEEEEE----------EEEE-CCHHHHHHCCCC
Q ss_conf             9999965998999973426-34584341----7899998641-2564168567----------8851-203367640477
Q gi|254780975|r   23 ISNITKAGAKQIHFDVMDG-CFVPNISF----GADVIRSLRS-YSDSVFDCHL----------MISS-IDSHINIIADAG   85 (224)
Q Consensus        23 i~~l~~~~~d~iHiDImDg-~fvpn~~~----~~~~i~~i~~-~t~~~~dvHL----------Mv~~-P~~~i~~~~~~g   85 (224)
                      ++.+++  +.|.|+.+--| +|--++-|    +++.++.+|+ ..+.++.--|          ..++ -++|+++..+.|
T Consensus        34 ~e~lD~--~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nG  111 (472)
T COG5016          34 AEALDK--VGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENG  111 (472)
T ss_pred             HHHHHH--CCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             999875--180578741770099999986479899999999867885889987037513656784589999999998648


Q ss_pred             CCEEEEECCCCCC---HHHHHHHHHHCCCEEEEEEECCC-CHHHHHHHHHHCCEEEEEEEE-C---CCCCCCCCCHHHHH
Q ss_conf             6079997066421---58999867764982599852333-447899886201402899830-6---77653322013577
Q gi|254780975|r   86 CDIITFHPESSPH---IRRSLRTIHAMGKKTGVAINPET-PVAILEDVIDEIDMILIMTVN-P---GFGGQQLIESTIPK  157 (224)
Q Consensus        86 ~d~i~~H~E~~~~---~~~~i~~i~~~g~k~Giai~p~T-~~~~i~~~l~~~D~vliM~V~-P---G~~Gq~f~~~~l~k  157 (224)
                      .|.+-+- .+.+|   +...++.+++.|..+-.++.-.| |+..++.|++...-++=|+++ .   .-+|-.--..+++-
T Consensus       112 idvfRiF-DAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayel  190 (472)
T COG5016         112 IDVFRIF-DALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYEL  190 (472)
T ss_pred             CCEEEEC-HHCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
T ss_conf             7579721-110464679999999996186368998742688652899999999999727987884000026986889999


Q ss_pred             HHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf             8998654313-865269815899889999996799899974
Q gi|254780975|r  158 IRQAKALIGK-RSISLEVDGGVTSRNIKSLVQAGADLLVVG  197 (224)
Q Consensus       158 I~~l~~~~~~-~~~~I~vDGGvn~~~i~~l~~~Gad~~V~G  197 (224)
                      |+.+|+.++= -.+....--|+..-+.-...++|||.+=..
T Consensus       191 Vk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTA  231 (472)
T COG5016         191 VKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDTA  231 (472)
T ss_pred             HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf             99999745970698504555617999999998176422210


No 243
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=94.37  E-value=0.46  Score=27.12  Aligned_cols=137  Identities=15%  Similarity=0.282  Sum_probs=88.7

Q ss_pred             HHHHHCCCCCCEEEE-ECCC-------CCCHHHHHHHHHHCCCEEEEEEECC-------CCH----HHHHHHHHHCCE--
Q ss_conf             367640477607999-7066-------4215899986776498259985233-------344----789988620140--
Q gi|254780975|r   77 HINIIADAGCDIITF-HPES-------SPHIRRSLRTIHAMGKKTGVAINPE-------TPV----AILEDVIDEIDM--  135 (224)
Q Consensus        77 ~i~~~~~~g~d~i~~-H~E~-------~~~~~~~i~~i~~~g~k~Giai~p~-------T~~----~~i~~~l~~~D~--  135 (224)
                      -.+.+.++|++++.+ |.|-       .+.+...++.++++|..+-+.++-.       ...    ..+...+..++-  
T Consensus        80 S~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~  159 (251)
T COG0149          80 SAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEA  159 (251)
T ss_pred             CHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             89999986998899785011243563469999999999988996899858977777555668899999999987448543


Q ss_pred             EEEEEEEC----CCCCCCCCCHHHHH-HHHHHHHHHC-----CCCEEEEECCCCHHHHHHHH-HCCCCEEEECHHHHCCC
Q ss_conf             28998306----77653322013577-8998654313-----86526981589988999999-67998999742663789
Q gi|254780975|r  136 ILIMTVNP----GFGGQQLIESTIPK-IRQAKALIGK-----RSISLEVDGGVTSRNIKSLV-QAGADLLVVGSSFFNQK  204 (224)
Q Consensus       136 vliM~V~P----G~~Gq~f~~~~l~k-I~~l~~~~~~-----~~~~I~vDGGvn~~~i~~l~-~~Gad~~V~Gsaif~~~  204 (224)
                      =.+...+|    | .|-+-.+.-.+. .+.+|+...+     .++.|.--||||.+|+.++. ..++|-+-+||+-.+.+
T Consensus       160 ~~vIAYEPvWAIG-TG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~  238 (251)
T COG0149         160 NIVIAYEPVWAIG-TGKSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKAD  238 (251)
T ss_pred             CEEEEECCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEECCEEECCH
T ss_conf             7399987888845-898889888999999999999974487787579971776855799996589998689721330525


Q ss_pred             CHHHHHHHHH
Q ss_conf             9899999999
Q gi|254780975|r  205 GEISYAKRLN  214 (224)
Q Consensus       205 d~~~~~~~l~  214 (224)
                      |+...++.+.
T Consensus       239 ~f~~ii~~~~  248 (251)
T COG0149         239 DFLAILEALA  248 (251)
T ss_pred             HHHHHHHHHH
T ss_conf             5999999986


No 244
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=94.32  E-value=0.47  Score=27.05  Aligned_cols=172  Identities=16%  Similarity=0.184  Sum_probs=92.8

Q ss_pred             HHHCCCCEEEEEEECCEECCCCCCCH-H-HHHHHHHCCCCEEEEEEEEEECCHHH---HHHCCCCCCEEEEECCC-----
Q ss_conf             99659989999734263458434178-9-99986412564168567885120336---76404776079997066-----
Q gi|254780975|r   26 ITKAGAKQIHFDVMDGCFVPNISFGA-D-VIRSLRSYSDSVFDCHLMISSIDSHI---NIIADAGCDIITFHPES-----   95 (224)
Q Consensus        26 l~~~~~d~iHiDImDg~fvpn~~~~~-~-~i~~i~~~t~~~~dvHLMv~~P~~~i---~~~~~~g~d~i~~H~E~-----   95 (224)
                      +.+.|+|...--.+..+   .+.+.. . .......-...++-|.|.-.+|+.+.   +...+.|+|.|-+-.-+     
T Consensus        29 ~~~~Ga~l~~TEmv~a~---~~~~~~~~~~~~~~~~~~~~~~~vQl~G~dp~~~a~Aa~~~~~~g~~~IDiN~GCP~~kV  105 (321)
T PRK10415         29 CYEMGAGLTVSEMMSSN---PQVWESDKSRLRMVHVDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKV  105 (321)
T ss_pred             HHHHCCCEEEECCEEEC---HHHHCCHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf             99988399998758712---777338488986304678898059972699999999999887649998943189998997


Q ss_pred             ---------CCCH---HHHHHHHHHC-CC----EEEEEEECCCC-HHHHHHHHHH--CCEEEEEEEECCCCCCCCCC-HH
Q ss_conf             ---------4215---8999867764-98----25998523334-4789988620--14028998306776533220-13
Q gi|254780975|r   96 ---------SPHI---RRSLRTIHAM-GK----KTGVAINPETP-VAILEDVIDE--IDMILIMTVNPGFGGQQLIE-ST  154 (224)
Q Consensus        96 ---------~~~~---~~~i~~i~~~-g~----k~Giai~p~T~-~~~i~~~l~~--~D~vliM~V~PG~~Gq~f~~-~~  154 (224)
                               ..++   .++++.+++. +.    |.-+.+.++.. ...+.+.++.  ++.|.+.   +....|.+.- .-
T Consensus       106 ~k~g~GsaLl~~p~~~~~iv~a~~~a~~iPVTvKiRlG~~~~~~~~~~~~~~~e~aG~~~itvH---gRT~~q~y~g~ad  182 (321)
T PRK10415        106 NRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIH---GRTRACLFNGEAE  182 (321)
T ss_pred             CCCCCEEEHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE---HHHHHHHHCCCCC
T ss_conf             0798365063398999999999973448746999846888522439999999985698899997---2213443169987


Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHH-CCCCEEEECHHHHCCCCH
Q ss_conf             577899865431386526981589-9889999996-799899974266378998
Q gi|254780975|r  155 IPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQ-AGADLLVVGSSFFNQKGE  206 (224)
Q Consensus       155 l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~-~Gad~~V~Gsaif~~~d~  206 (224)
                      .+.|+++++   ..++++..-|+| +.+.+..+.+ .|+|-+-.|.+.+++|-.
T Consensus       183 w~~i~~vk~---~~~iPvi~NGDI~~~~da~~~l~~tg~dgvMigRgal~nPwi  233 (321)
T PRK10415        183 YDSIRAVKQ---KVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI  233 (321)
T ss_pred             HHHHHHHHH---CCCCCEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHCCCHH
T ss_conf             799999985---479978965891999999999986299999975665369877


No 245
>PRK07094 biotin synthase; Provisional
Probab=94.29  E-value=0.48  Score=27.01  Aligned_cols=180  Identities=19%  Similarity=0.252  Sum_probs=110.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf             588999999999996599899997342634584341--789999864125641685678851203367640477607999
Q gi|254780975|r   14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITF   91 (224)
Q Consensus        14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~   91 (224)
                      .+.-++.+..+...+.|+..+.+  .=|. -|..+.  -.++++.||+.+++.+.+-+= .-+..-...|.++|+|+...
T Consensus        70 Ls~eeI~~~A~~a~~~G~~~~~l--qsG~-~~~~~~e~~~~ii~~Ik~~~~l~i~lSlG-~l~~e~~~~Lk~AG~dry~~  145 (323)
T PRK07094         70 LSPEEILECAKKAYELGYGTIVL--QSGE-DPYYTDEKIADIIKEIKKELDVAITLSLG-ERSYEEYKAWKEAGADRYLL  145 (323)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEE--ECCC-CCCCCHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHCCCCEEEC
T ss_conf             99999999999999869988999--6489-98866999999999986059945997578-79999999999859774412


Q ss_pred             ECCCCC--------------CHHHHHHHHHHCCCEE--EEEEE-CCCCHHHHHHHH---H--HCCEEEEEEEE--CC--C
Q ss_conf             706642--------------1589998677649825--99852-333447899886---2--01402899830--67--7
Q gi|254780975|r   92 HPESSP--------------HIRRSLRTIHAMGKKT--GVAIN-PETPVAILEDVI---D--EIDMILIMTVN--PG--F  145 (224)
Q Consensus        92 H~E~~~--------------~~~~~i~~i~~~g~k~--Giai~-p~T~~~~i~~~l---~--~~D~vliM~V~--PG--~  145 (224)
                      -.|+.+              +-.++++.+++.|.++  |.-+. |+...+.+...+   .  ++|.|-+.--.  ||  +
T Consensus       146 nlETs~~~~y~~i~p~~t~~~Rl~~l~~~k~~G~~v~sG~iiGlpGET~edr~~~l~~LreL~~~~v~i~~fiP~~gTPl  225 (323)
T PRK07094        146 RHETADRELYEKLHPGMSFENRIQCLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPL  225 (323)
T ss_pred             CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCC
T ss_conf             45656989867758999989999999999983981043027798999999999999999837998867725517999998


Q ss_pred             CCCCC--CCHHHHHHHHHHHHHHCCCCEE-EEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf             65332--2013577899865431386526-9815899889999996799899974
Q gi|254780975|r  146 GGQQL--IESTIPKIRQAKALIGKRSISL-EVDGGVTSRNIKSLVQAGADLLVVG  197 (224)
Q Consensus       146 ~Gq~f--~~~~l~kI~~l~~~~~~~~~~I-~vDGGvn~~~i~~l~~~Gad~~V~G  197 (224)
                      .+++-  ...++.-|.-+|=+.|+.++.- ..=|.++.+--.....+|||++-.-
T Consensus       226 ~~~~~~~~~~~lr~iAl~Rli~P~a~Ipattal~~l~~~g~~~~l~aGANvvmp~  280 (323)
T PRK07094        226 ADEKGGSLELTLKVLALARLLLPDANIPATTALGTLNPDGREKGLKAGANVVMPN  280 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHCCCCEECCC
T ss_conf             8999979999999999999978766574446532249889999987688664788


No 246
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.18  E-value=0.34  Score=27.98  Aligned_cols=191  Identities=18%  Similarity=0.278  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECC-CCCC----CHHHHHHHHH-CCCCEEEEEEE-------EEECC----HHHH
Q ss_conf             99999999999659989999734263458-4341----7899998641-25641685678-------85120----3367
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVP-NISF----GADVIRSLRS-YSDSVFDCHLM-------ISSID----SHIN   79 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvp-n~~~----~~~~i~~i~~-~t~~~~dvHLM-------v~~P~----~~i~   79 (224)
                      .+...-...+++.|++.+  .+.=|-..+ .+-|    ..+.++.+|+ .++.++...+=       ...|.    .+++
T Consensus        26 ~d~l~IA~~ld~~Gv~si--E~~GgAtfd~~~r~l~Edpwerlr~i~~~~~nt~lq~LlRg~n~vGy~~~pddvv~~~v~  103 (463)
T PRK12331         26 EEMLPILEKLDNAGYHSL--EMWGGATFDACLRFLNEDPWERLRAIRKAVKNTKLQMLLRGQNLLGYRNYADDVVESFVQ  103 (463)
T ss_pred             HHHHHHHHHHHHCCCCEE--ECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf             999999999986398489--847771199999985889899999999867884568987003324311378089999999


Q ss_pred             HHCCCCCCEEEEECCC--CCCHHHHHHHHHHCCCEEEEEEECCC-CHHHHHHHHHHCCEEEEE-----EEECCCCCCCCC
Q ss_conf             6404776079997066--42158999867764982599852333-447899886201402899-----830677653322
Q gi|254780975|r   80 IIADAGCDIITFHPES--SPHIRRSLRTIHAMGKKTGVAINPET-PVAILEDVIDEIDMILIM-----TVNPGFGGQQLI  151 (224)
Q Consensus        80 ~~~~~g~d~i~~H~E~--~~~~~~~i~~i~~~g~k~Giai~p~T-~~~~i~~~l~~~D~vliM-----~V~PG~~Gq~f~  151 (224)
                      ...++|.|++-+.--.  ..++...++..++.|..+-.++.-.+ |...++.|++....+.=|     ++. --.|---=
T Consensus       104 ~a~~~Gidv~rifd~lndi~nl~~ai~~~k~~G~~~~~~i~yt~sp~~t~~yyv~~a~~l~~~Gad~I~ik-D~aGll~P  182 (463)
T PRK12331        104 KSIENGIDIIRIFDALNDVRNLQTAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEIGADSICIK-DMAGILTP  182 (463)
T ss_pred             HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCH
T ss_conf             99985999788740566467789999999970786999999725886769999999999996499889986-78677688


Q ss_pred             CHHHHHHHHHHHHHHCCCCEEE----EECCCCHHHHHHHHHCCCCEEEEC-HHH---HCCCCHHHHHHHH
Q ss_conf             0135778998654313865269----815899889999996799899974-266---3789989999999
Q gi|254780975|r  152 ESTIPKIRQAKALIGKRSISLE----VDGGVTSRNIKSLVQAGADLLVVG-SSF---FNQKGEISYAKRL  213 (224)
Q Consensus       152 ~~~l~kI~~l~~~~~~~~~~I~----vDGGvn~~~i~~l~~~Gad~~V~G-sai---f~~~d~~~~~~~l  213 (224)
                      ..+.+.|+.+|+..   ++.|+    =|-|...-|.-...++|||++=.. |++   -.++...+....+
T Consensus       183 ~~~~eLV~aLk~~~---~lpI~~HtH~t~Gla~an~laAieAGaDivD~a~~~~s~gtsqP~~~s~v~~l  249 (463)
T PRK12331        183 YVAYELVKCIKENV---TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVIAL  249 (463)
T ss_pred             HHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf             99999999999744---98569983688757999999999849999962353546797898799999998


No 247
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=93.95  E-value=0.13  Score=30.54  Aligned_cols=136  Identities=13%  Similarity=0.227  Sum_probs=74.1

Q ss_pred             EEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH-HCCC--EEEEEEECC-------CCHHHHHHHHH--
Q ss_conf             16856788512033676404776079997066421589998677-6498--259985233-------34478998862--
Q gi|254780975|r   64 VFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIH-AMGK--KTGVAINPE-------TPVAILEDVID--  131 (224)
Q Consensus        64 ~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~-~~g~--k~Giai~p~-------T~~~~i~~~l~--  131 (224)
                      .+.-|+.=.=..+.+...+.. +++  +|.=-...+.+.++... +.+.  ++=|-+|.+       .+++.+..+++  
T Consensus        72 ~i~wHfIG~LQsNKvk~i~~~-~~~--IhSvDs~kla~~l~~~~~~~~~~~~vliQVN~s~E~~K~G~~~~e~~~~~~~i  148 (224)
T cd06824          72 DIEWHFIGPIQSNKTKLIAEN-FDW--VHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISGEDSKSGVAPEDAAELAEAI  148 (224)
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HHH--HHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             955999775520167999985-218--97645099999999999972998628999853785002698999999999999


Q ss_pred             ----HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             ----0140289983067765332201357789986543138652-69815899889999996799899974266378
Q gi|254780975|r  132 ----EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS-LEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQ  203 (224)
Q Consensus       132 ----~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~-I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~  203 (224)
                          .+...-+||+-|-.....-....+.+++++++-+...... -+.-=|.+ ...+..++.|++.+=+||+||++
T Consensus       149 ~~~~~l~i~GLMti~p~~~d~~~~r~~F~~l~~l~~~l~~~~~~~~~LSMGMS-~Dye~AI~~GsT~VRIGsaIFGa  224 (224)
T cd06824         149 SQLPNLRLRGLMAIPAPTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMGMS-GDLEAAIAAGSTMVRIGTAIFGA  224 (224)
T ss_pred             HHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCH-HHHHHHHHCCCCEEEECCHHHCC
T ss_conf             95699842667765799988578999999999999999851799895777054-54999998799979818364196


No 248
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=93.80  E-value=0.59  Score=26.41  Aligned_cols=179  Identities=15%  Similarity=0.173  Sum_probs=104.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCC--CC----CHHHHHHHHHC-CCCEEEEEEEEEE-CCHHHHHHCCCC
Q ss_conf             5889999999999965998999973426345843--41----78999986412-5641685678851-203367640477
Q gi|254780975|r   14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNI--SF----GADVIRSLRSY-SDSVFDCHLMISS-IDSHINIIADAG   85 (224)
Q Consensus        14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~--~~----~~~~i~~i~~~-t~~~~dvHLMv~~-P~~~i~~~~~~g   85 (224)
                      .+.....+-++.|+++|++++-+---||-....+  +|    ..+.++.+++. .+..+-+.+.-.. -...++...++|
T Consensus        22 fs~e~k~~ia~~Ld~aGVd~IEVghg~gl~~ss~~~g~~~~~d~e~i~~~~~~~~~aki~~l~~pg~~~~~dl~~A~~~g  101 (337)
T PRK08195         22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAADVVKQAKLATLLLPGIGTIEDLKMAYDAG  101 (337)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf             89999999999999809899994478887775334678779839999999997432837899635655588899999579


Q ss_pred             CCEEEE--ECCCCCCHHHHHHHHHHCCCEEEEEE--ECCCCHHHHHHHHHH-----CCEEEEEEEECCCCCCCCCCHHHH
Q ss_conf             607999--70664215899986776498259985--233344789988620-----140289983067765332201357
Q gi|254780975|r   86 CDIITF--HPESSPHIRRSLRTIHAMGKKTGVAI--NPETPVAILEDVIDE-----IDMILIMTVNPGFGGQQLIESTIP  156 (224)
Q Consensus        86 ~d~i~~--H~E~~~~~~~~i~~i~~~g~k~Giai--~p~T~~~~i~~~l~~-----~D~vliM~V~PG~~Gq~f~~~~l~  156 (224)
                      ++.+-+  |+.-.+...+.++++|+.|.++-..+  ..-++.+.+......     +|.|-+.    --.|--.-..+.+
T Consensus       102 v~~vria~~~tead~~~~~i~~ar~~G~~v~~~lm~s~~~~~e~l~~~a~~~~~~Gad~I~l~----DT~G~~~P~~v~~  177 (337)
T PRK08195        102 VRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMASPEKLAEQAKLMESYGAQCVYVV----DSAGALLPDDVRA  177 (337)
T ss_pred             CCEEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCHHHHHHHHHHHHHCCCCEEEEC----CCCCCCCHHHHHH
T ss_conf             897999863148877999999999779939997511024899999999999986599999978----9876679999999


Q ss_pred             HHHHHHHHHH-CCC--CEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf             7899865431-386--526981589988999999679989997
Q gi|254780975|r  157 KIRQAKALIG-KRS--ISLEVDGGVTSRNIKSLVQAGADLLVV  196 (224)
Q Consensus       157 kI~~l~~~~~-~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~  196 (224)
                      .++.+++..+ +..  +...=|=|.-.-|.-...++||+.+=+
T Consensus       178 ~v~~l~~~l~~~i~igfH~HNnlGlAvANslaAveaGA~~ID~  220 (337)
T PRK08195        178 RVRALRAALKPDTQVGFHGHHNLGLGVANSLAAVEAGADRIDA  220 (337)
T ss_pred             HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             9999998649985499985388675999999999809999985


No 249
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=93.79  E-value=0.59  Score=26.40  Aligned_cols=124  Identities=15%  Similarity=0.216  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC-HHHHHHHHHCCCCEEEEEEEEEEC---CHHHHHHCCCCCCEEEEE
Q ss_conf             9999999999965998999973426345843417-899998641256416856788512---033676404776079997
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG-ADVIRSLRSYSDSVFDCHLMISSI---DSHINIIADAGCDIITFH   92 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~-~~~i~~i~~~t~~~~dvHLMv~~P---~~~i~~~~~~g~d~i~~H   92 (224)
                      +.+++-++.+++.|+..+.  |.-|.  |=+-=. +++++.+++   ..+-+.| +.|.   ++.++.+..+|...+.+|
T Consensus        59 Ls~ee~~~~~~e~Gap~V~--itGGE--PLLr~dl~eIv~~a~~---~g~~v~l-~TNG~Ll~k~i~~~~~~~~~~~~Vs  130 (318)
T TIGR03470        59 LSVEECLRAVDECGAPVVS--IPGGE--PLLHPEIDEIVRGLVA---RKKFVYL-CTNALLLEKKLDKFEPSPYLTFSVH  130 (318)
T ss_pred             CCHHHHHHHHHHCCCCEEE--ECCCC--CCCCCCHHHHHHHHHH---CCCEEEE-ECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             8999999999984997899--51887--4556479999999997---5997999-7755200999999851888369998


Q ss_pred             CCCCCC--------------HHHHHHHHHHCCCEEEEEEEC--CCCHHHHHHHHHHCCE--EEEEEEECCCCCC
Q ss_conf             066421--------------589998677649825998523--3344789988620140--2899830677653
Q gi|254780975|r   93 PESSPH--------------IRRSLRTIHAMGKKTGVAINP--ETPVAILEDVIDEIDM--ILIMTVNPGFGGQ  148 (224)
Q Consensus        93 ~E~~~~--------------~~~~i~~i~~~g~k~Giai~p--~T~~~~i~~~l~~~D~--vliM~V~PG~~Gq  148 (224)
                      .+..+.              ..+.|+.++++|.++.+--..  ++.++.+..+++.+.-  |.-|++.|||+..
T Consensus       131 LDG~~e~HD~~r~~~G~Fd~av~aIr~ak~~G~~V~iN~Tvf~~~n~~~i~~~~d~~~~lgVdgi~isp~y~Ye  204 (318)
T TIGR03470       131 LDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYE  204 (318)
T ss_pred             CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             01787886688717977999999999999869946799897068999999999999987699738976653102


No 250
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=93.77  E-value=0.6  Score=26.37  Aligned_cols=171  Identities=18%  Similarity=0.187  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECC-EECCCCCCCHHHHHHHHHC-CCCEEEEEEEEEE-C-CHHHHHHCCCCCCEEEE
Q ss_conf             89999999999965998999973426-3458434178999986412-5641685678851-2-03367640477607999
Q gi|254780975|r   16 FSRLGEEISNITKAGAKQIHFDVMDG-CFVPNISFGADVIRSLRSY-SDSVFDCHLMISS-I-DSHINIIADAGCDIITF   91 (224)
Q Consensus        16 ~~~l~~~i~~l~~~~~d~iHiDImDg-~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~~-P-~~~i~~~~~~g~d~i~~   91 (224)
                      .-+-.+-++.|.+.|++.|-+    | -|+..-.+  +.++.+++. .+.++..+..... | .+-++....+|++.+.+
T Consensus        13 ~e~K~~i~~~L~~~Gv~~IEv----g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g~~~i~i   86 (237)
T pfam00682        13 VEEKLAIARALDEAGVDEIEV----GFPFMSPTDF--ESVRAIAEVLKKAKIQALLRPVEHDIDAAVEAAKGAGADRVHV   86 (237)
T ss_pred             HHHHHHHHHHHHHCCCCEEEE----ECCCCCCCHH--HHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             999999999999849898999----5775897359--9999776502587510100034104999999999679999999


Q ss_pred             ECCCCC----------------CHHHHHHHHHHCCCEEEEE--EECCCCHHHHHHHHHHC-----CEEEEEEEECCCCCC
Q ss_conf             706642----------------1589998677649825998--52333447899886201-----402899830677653
Q gi|254780975|r   92 HPESSP----------------HIRRSLRTIHAMGKKTGVA--INPETPVAILEDVIDEI-----DMILIMTVNPGFGGQ  148 (224)
Q Consensus        92 H~E~~~----------------~~~~~i~~i~~~g~k~Gia--i~p~T~~~~i~~~l~~~-----D~vliM~V~PG~~Gq  148 (224)
                      -.-.++                ...+.+.++++.|.++-+.  -...++.+.+..++..+     |.| .++   --.|.
T Consensus        87 ~~~~se~~~~~n~~~s~~~~l~~~~~~i~~a~~~g~~v~f~~~~~~~~~~~~~~~~~~~~~~~G~~~i-~l~---DT~G~  162 (237)
T pfam00682        87 FIATSDLHRKYKLNKDREEVADRAVAAVEAARSAGIDVELGCEDAGRTDLAFLIEVVEVAQEAGATRI-NIA---DTVGV  162 (237)
T ss_pred             EEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE-EEC---CCCCC
T ss_conf             61057878998857899999999999999999869905884051232478899999999986198579-736---86455


Q ss_pred             CCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf             322013577899865431386--526981589988999999679989997
Q gi|254780975|r  149 QLIESTIPKIRQAKALIGKRS--ISLEVDGGVTSRNIKSLVQAGADLLVV  196 (224)
Q Consensus       149 ~f~~~~l~kI~~l~~~~~~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~  196 (224)
                      ..-..+.+.++.+++.+++..  +...=|=|.-..|.-...++|++.+=+
T Consensus       163 ~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~aN~l~A~~aG~~~id~  212 (237)
T pfam00682       163 LTPNEAADLISALKDRVPPVIIEVHCHNDLGMAVANSLAAVEAGADRVDG  212 (237)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             79899999999999708987158874488672999999999968999987


No 251
>TIGR00734 hisAF_rel hisA/hisF family protein; InterPro: IPR004650   This family of proteins has so far been found in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. Proteins are homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. However, the function of proteins in this group is unknown..
Probab=93.75  E-value=0.6  Score=26.35  Aligned_cols=179  Identities=11%  Similarity=0.233  Sum_probs=121.2

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCC-CCEEEEEEEEEECCH--HHHHHCCCCC
Q ss_conf             0632588999999999996599899997342634584341789999864125-641685678851203--3676404776
Q gi|254780975|r   10 SILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYS-DSVFDCHLMISSIDS--HINIIADAGC   86 (224)
Q Consensus        10 Sil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t-~~~~dvHLMv~~P~~--~i~~~~~~g~   86 (224)
                      +-.+.|+.+....+   ++.|..++-  |.|=.|.-..+=+++.++.+.... .+.+|+=  +..|+.  -+....+. +
T Consensus        32 ~~~ss~P~~~ak~~---~e~gar~iY--iADLd~I~G~GdNf~~~~~~~~~~~e~I~D~G--vrS~EdLE~~~f~l~~-~  103 (230)
T TIGR00734        32 ISKSSDPVDVAKAL---KEIGARSIY--IADLDAIVGLGDNFELVKKVDKVVEELIVDIG--VRSREDLETLKFVLEK-D  103 (230)
T ss_pred             EECCCCHHHHHHHH---HHCCCCEEE--EEEHHHHCCCCCHHHHHHHHHHHCCHHEEECC--CCCHHHHHHCCCCCCC-C
T ss_conf             70788878999999---863884686--34100222688548999886322200124135--5684544310367563-5


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHCC-CEEEEEE----------ECCCCHHHHHHHHH--HCCEEEEEEEE-CCCCCCCCCC
Q ss_conf             079997066421589998677649-8259985----------23334478998862--01402899830-6776533220
Q gi|254780975|r   87 DIITFHPESSPHIRRSLRTIHAMG-KKTGVAI----------NPETPVAILEDVID--EIDMILIMTVN-PGFGGQQLIE  152 (224)
Q Consensus        87 d~i~~H~E~~~~~~~~i~~i~~~g-~k~Giai----------~p~T~~~~i~~~l~--~~D~vliM~V~-PG~~Gq~f~~  152 (224)
                      +++.+=.||.+..+..-+..|++- -++-+++          +....++.+..+++  ++|.+.++-+. -|.+ +.|+.
T Consensus       104 ~R~vVaTETl~~~ell~e~~rnyPPer~VVSlDfK~~~L~~~~l~~~leevrd~l~~f~~~GlI~LdI~sVGt~-~G~n~  182 (230)
T TIGR00734       104 DRVVVATETLDSTELLKEILRNYPPERIVVSLDFKEKRLDASSLEESLEEVRDLLNSFDLDGLIVLDISSVGTS-KGVNL  182 (230)
T ss_pred             CCEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCCCH
T ss_conf             63688624504678999986158986379998400552000130456888875306631013798336330567-78788


Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH-HHCCCCEEEECHHHHCC
Q ss_conf             1357789986543138652698158998899999-96799899974266378
Q gi|254780975|r  153 STIPKIRQAKALIGKRSISLEVDGGVTSRNIKSL-VQAGADLLVVGSSFFNQ  203 (224)
Q Consensus       153 ~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l-~~~Gad~~V~Gsaif~~  203 (224)
                      +.+++++++.+   +   ++.+=|||.-.-..++ .+.|++.+-+|+|+.+.
T Consensus       183 ell~~~l~l~e---~---PV~~GGGi~g~EdlEl~~~mGv~avLvatA~HkG  228 (230)
T TIGR00734       183 ELLKKVLELSE---R---PVILGGGIKGVEDLELLKEMGVSAVLVATAVHKG  228 (230)
T ss_pred             HHHHHHHHHHC---C---CEEECCCCCCCCHHHHHHHCCCCEEEEEEEECCC
T ss_conf             89998864424---8---7140687367510788885687657553210047


No 252
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=93.73  E-value=0.61  Score=26.33  Aligned_cols=156  Identities=24%  Similarity=0.331  Sum_probs=89.4

Q ss_pred             HHHHHHHHCCCCEEEEEEEE--EECC-HHHHHHCCCCCCEEEEECC--CCCCHHHH---HHHHHHCCCEEEEEEECCCCH
Q ss_conf             99998641256416856788--5120-3367640477607999706--64215899---986776498259985233344
Q gi|254780975|r   52 DVIRSLRSYSDSVFDCHLMI--SSID-SHINIIADAGCDIITFHPE--SSPHIRRS---LRTIHAMGKKTGVAINPETPV  123 (224)
Q Consensus        52 ~~i~~i~~~t~~~~dvHLMv--~~P~-~~i~~~~~~g~d~i~~H~E--~~~~~~~~---i~~i~~~g~k~Giai~p~T~~  123 (224)
                      +.++.+++.....+++||.+  ..+. .-++.+.++|.|-|-||.-  +....++.   +...++.|+.+|+-+ |.+|-
T Consensus        98 ~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~dvG~Ei-Paipg  176 (353)
T COG2108          98 EYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMDVGVEI-PAIPG  176 (353)
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEC-CCCCC
T ss_conf             99999987635320599840665688899999986798759946897211231899999999998285510432-78865


Q ss_pred             H-----HHHHHHHH--CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCE---
Q ss_conf             7-----89988620--1402899830677653322013577899865431386526981589988999999679989---
Q gi|254780975|r  124 A-----ILEDVIDE--IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADL---  193 (224)
Q Consensus       124 ~-----~i~~~l~~--~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~---  193 (224)
                      .     .+..+++.  .|++.+   |    .--|.+.-+..+..- -+....+....|+|+  .+++-++.+...+.   
T Consensus       177 ~e~~i~e~~~~~~~~~~~FlNi---N----ELE~sE~N~~~l~~~-gy~~~~~~~~av~GS--~E~~Lk~l~~~~~~~~l  246 (353)
T COG2108         177 EEEAILEFAKALDENGLDFLNI---N----ELEFSENNYENLLER-GYKISDDGSSAVAGS--LEAALKVLKWAEENWDL  246 (353)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEE---E----EEEECCCHHHHHHHC-CCEECCCCCCCCCCH--HHHHHHHHHHHHCCCCC
T ss_conf             6889999999987606653421---0----044052119999866-761326875543445--89999999987515675


Q ss_pred             -EEECHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             -997426637899899999999999978
Q gi|254780975|r  194 -LVVGSSFFNQKGEISYAKRLNDLKKSA  220 (224)
Q Consensus       194 -~V~Gsaif~~~d~~~~~~~l~~l~~~a  220 (224)
                       +--.|+.|+  |-.+...+++.++++-
T Consensus       247 ~vH~Css~~K--DavQ~r~Rl~r~Akn~  272 (353)
T COG2108         247 TVHYCSSKFK--DAVQLRNRLKRMAKNV  272 (353)
T ss_pred             EEEECCHHHH--HHHHHHHHHHHHHHHC
T ss_conf             4897735666--8999989999998606


No 253
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=93.72  E-value=0.61  Score=26.32  Aligned_cols=118  Identities=14%  Similarity=0.191  Sum_probs=66.7

Q ss_pred             EEECCHHHHHHCCCCCCEEEEECCCC---------------------CC-HHHHHHHHHHCCCEEEEEEECCCCHHHHHH
Q ss_conf             85120336764047760799970664---------------------21-589998677649825998523334478998
Q gi|254780975|r   71 ISSIDSHINIIADAGCDIITFHPESS---------------------PH-IRRSLRTIHAMGKKTGVAINPETPVAILED  128 (224)
Q Consensus        71 v~~P~~~i~~~~~~g~d~i~~H~E~~---------------------~~-~~~~i~~i~~~g~k~Giai~p~T~~~~i~~  128 (224)
                      --||+.+++.+.++|+.++++-.++-                     .| +.+..+.+|++|+++|+-.++   .+...|
T Consensus        80 ~Fda~~Wa~lak~AGaKY~V~TaKHHDGF~lwdS~~s~~n~~~~gpkrDiv~el~~A~rk~Glk~G~YyS~---~DW~~p  156 (384)
T smart00812       80 KFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FDWFNP  156 (384)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECH---HHHCCC
T ss_conf             28999999999984995477521304774146788999866567887667999999998769769998137---773787


Q ss_pred             HHHHCCEEEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCC--------HHHHHHHHHCCCC---EE
Q ss_conf             8620140289983067--765332201357789986543138652-69815899--------8899999967998---99
Q gi|254780975|r  129 VIDEIDMILIMTVNPG--FGGQQLIESTIPKIRQAKALIGKRSIS-LEVDGGVT--------SRNIKSLVQAGAD---LL  194 (224)
Q Consensus       129 ~l~~~D~vliM~V~PG--~~Gq~f~~~~l~kI~~l~~~~~~~~~~-I~vDGGvn--------~~~i~~l~~~Gad---~~  194 (224)
                      .-.....-   ..+++  ...+.|.+..+..++   +|+.+++.+ ++-||+..        .+-+..+.+...+   ++
T Consensus       157 ~y~~~~~~---~~~~~~~~~~~~y~~~~~~Ql~---ELi~~YgpdilWfD~~~~~~~~~~~~~~l~~~~~~~~p~~~~~v  230 (384)
T smart00812      157 LYAGPTSS---DEDPDNWPRFQEFVDDWLPQLR---ELVTRYKPDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVKDTVV  230 (384)
T ss_pred             CCCCCCCC---CCCCCCCCCHHHHHHHHHHHHH---HHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf             56675654---4443237218999999999999---99973488559970897886121239999999998499987699


Q ss_pred             EEC
Q ss_conf             974
Q gi|254780975|r  195 VVG  197 (224)
Q Consensus       195 V~G  197 (224)
                      |-.
T Consensus       231 vn~  233 (384)
T smart00812      231 VND  233 (384)
T ss_pred             EEC
T ss_conf             978


No 254
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=93.67  E-value=0.62  Score=26.27  Aligned_cols=196  Identities=22%  Similarity=0.261  Sum_probs=110.5

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEE-ECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf             889999999999965998999973-42634584341--789999864125641685678851203367640477607999
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDV-MDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITF   91 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDI-mDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~   91 (224)
                      +.-.+.++-+..++.|+-  ++-+ .-|.= ....+  =.+.++.+++.+.+++=+-|= .-.....+++.++|+|++.-
T Consensus        85 ~~eeIle~Ak~ak~~Ga~--r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG-~l~~eq~~~L~~aGvd~ynh  160 (335)
T COG0502          85 EVEEILEAAKKAKAAGAT--RFCMGAAGRG-PGRDMEEVVEAIKAVKEELGLEVCASLG-MLTEEQAEKLADAGVDRYNH  160 (335)
T ss_pred             CHHHHHHHHHHHHHCCCC--EEEEEEECCC-CCCCHHHHHHHHHHHHHHCCCHHHHCCC-CCCHHHHHHHHHCCHHHEEC
T ss_conf             999999999999974995--0799873167-7744899999999999846928640258-79999999999718113303


Q ss_pred             ECCCCCC-------------HHHHHHHHHHCCCEE--EEEEECC-CCHH---HHHHHHH--HCCEEEEEEEEC--CC--C
Q ss_conf             7066421-------------589998677649825--9985233-3447---8998862--014028998306--77--6
Q gi|254780975|r   92 HPESSPH-------------IRRSLRTIHAMGKKT--GVAINPE-TPVA---ILEDVID--EIDMILIMTVNP--GF--G  146 (224)
Q Consensus        92 H~E~~~~-------------~~~~i~~i~~~g~k~--Giai~p~-T~~~---~i~~~l~--~~D~vliM~V~P--G~--~  146 (224)
                      -.|+..+             -.+++...|+.|.++  |.-+..+ |.-+   .+..+.+  ..|.|-++.-+|  |-  .
T Consensus       161 NLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle  240 (335)
T COG0502         161 NLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLE  240 (335)
T ss_pred             CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC
T ss_conf             55569788756578988889999999999809850451276189988899999999971899885423210379998666


Q ss_pred             CCC-CCC-HHHHHHHHHHHHHHCCCCEEEEECC---CCHHHHHHHHHCCCCEEEECH-HHHC-CCCHHHHHHHHHHH
Q ss_conf             533-220-1357789986543138652698158---998899999967998999742-6637-89989999999999
Q gi|254780975|r  147 GQQ-LIE-STIPKIRQAKALIGKRSISLEVDGG---VTSRNIKSLVQAGADLLVVGS-SFFN-QKGEISYAKRLNDL  216 (224)
Q Consensus       147 Gq~-f~~-~~l~kI~~l~~~~~~~~~~I~vDGG---vn~~~i~~l~~~Gad~~V~Gs-aif~-~~d~~~~~~~l~~l  216 (224)
                      .++ ..+ ..+.-|.-+|-++|+..+.+  -||   +..+....+.-+||+.+..|- ++-. .++..+-.+.+++|
T Consensus       241 ~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~--s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~l  315 (335)
T COG0502         241 NAKPLDPFEFLKTIAVARIIMPKSMIRL--SAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKDL  315 (335)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEC--CCCCCCCCHHHHHHHHHHCCCEEEECCEEEECCCCCCHHHHHHHHHC
T ss_conf             5899998999999999999778645672--58835225888999998456635652447624899803689999973


No 255
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=93.57  E-value=0.15  Score=30.15  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=14.1

Q ss_pred             EEECCHHHHHHCC-CCCCEEEEECCCCC
Q ss_conf             8512033676404-77607999706642
Q gi|254780975|r   71 ISSIDSHINIIAD-AGCDIITFHPESSP   97 (224)
Q Consensus        71 v~~P~~~i~~~~~-~g~d~i~~H~E~~~   97 (224)
                      +++|-.|.+++.+ .|+|.|++|..++.
T Consensus        74 ~~dp~~wAKk~v~~~gaD~I~l~l~s~d  101 (322)
T PRK04452         74 MNDPAAWAKKCVEKYGADMITLHLISTD  101 (322)
T ss_pred             HCCHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             2299999999998718878999941588


No 256
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=93.54  E-value=0.66  Score=26.12  Aligned_cols=123  Identities=15%  Similarity=0.254  Sum_probs=75.7

Q ss_pred             HHCCCCCCEEEEECCCC----------------------C----CHHHHHHHHHHC-CC-EEEEEEECC--------C-C
Q ss_conf             64047760799970664----------------------2----158999867764-98-259985233--------3-4
Q gi|254780975|r   80 IIADAGCDIITFHPESS----------------------P----HIRRSLRTIHAM-GK-KTGVAINPE--------T-P  122 (224)
Q Consensus        80 ~~~~~g~d~i~~H~E~~----------------------~----~~~~~i~~i~~~-g~-k~Giai~p~--------T-~  122 (224)
                      ...++|.|-|-+|.-+.                      +    -+.++++.||+. |. .+|+=|+|.        . +
T Consensus       160 ra~~AGfDgVEiHaaHGyLl~qFLSp~~N~RtDeYGGS~eNR~Rf~~Eii~aIR~~vg~d~i~vRlSp~~~~~g~~~~~~  239 (338)
T cd02933         160 NAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDP  239 (338)
T ss_pred             HHHHCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCH
T ss_conf             99983999999822440689985385326898978999899989999999999997298708999657667688788877


Q ss_pred             HHHHHHHHH-----HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCC-CCEEEE
Q ss_conf             478998862-----01402899830677653322013577899865431386526981589988999999679-989997
Q gi|254780975|r  123 VAILEDVID-----EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAG-ADLLVV  196 (224)
Q Consensus       123 ~~~i~~~l~-----~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~G-ad~~V~  196 (224)
                      .+....++.     .+|++.+..-........+.+...   +.+|+.   .+..+.+=||++.+.+.++++.| +|.+..
T Consensus       240 ~~~~~~~~~~l~~~gid~~~v~~~~~~~~~~~~~~~~~---~~ir~~---~~~pvi~~G~i~~~~ae~~l~~G~~D~V~~  313 (338)
T cd02933         240 EATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFL---DFLRKA---FKGPLIAAGGYDAESAEAALADGKADLVAF  313 (338)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHH---HHHHHH---CCCCEEEECCCCHHHHHHHHHCCCCCHHHH
T ss_conf             99999999999985998899726877777777657799---999998---699799969989999999998799603685


Q ss_pred             CHHHHCCCCHHH
Q ss_conf             426637899899
Q gi|254780975|r  197 GSSFFNQKGEIS  208 (224)
Q Consensus       197 Gsaif~~~d~~~  208 (224)
                      |..+.-+|+...
T Consensus       314 gR~liaDP~~~~  325 (338)
T cd02933         314 GRPFIANPDLVE  325 (338)
T ss_pred             HHHHHHCCCHHH
T ss_conf             299987913999


No 257
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=93.53  E-value=0.63  Score=26.23  Aligned_cols=50  Identities=18%  Similarity=0.258  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHCCC---CEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             3577899865431386---52698158998899999967998999742663789
Q gi|254780975|r  154 TIPKIRQAKALIGKRS---ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       154 ~l~kI~~l~~~~~~~~---~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      .-.-++++|+.+++.+   ++|.+-||++.+.+..+.++ +|.+=+||+|-..+
T Consensus       243 ~~~l~~~vR~~LD~~G~~~vkIv~Sgglde~~I~~l~~~-vD~fGVGt~l~~~~  295 (343)
T PRK08662        243 FRKIVEEVRWTLDLHGYSHVKIFVSGGLDEEDIRELRDV-VDGFGVGTSISFAP  295 (343)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH-CCEEEECCCCCCCC
T ss_conf             799999999985455799828999489999999999864-86896066557898


No 258
>PRK12857 putative aldolase; Reviewed
Probab=93.52  E-value=0.66  Score=26.11  Aligned_cols=184  Identities=13%  Similarity=0.229  Sum_probs=114.9

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC--HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf             706325889999999999965998999973426345843417--899998641256416856788512033676404776
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG--ADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC   86 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~--~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~   86 (224)
                      |+.=+.|+..++--++..++.+..-| +.+-.+.. +..++.  ...++.+.+.+..|+-+||==-.-...+....++|-
T Consensus        21 ~AfNv~n~e~~~avi~AAee~~sPvI-lq~s~~~~-~~~g~~~~~~~~~~~a~~~~VpV~lHLDH~~~~e~i~~ai~~Gf   98 (284)
T PRK12857         21 GAFNCNNMEIVQAIVAAAEAERSPVI-IQASQGAI-KYAGIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGF   98 (284)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCEE-EECCCCHH-HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf             98788989999999999999789989-99171477-65799999999999999769989996798899999999998099


Q ss_pred             CEEEEECCCCC---C---HHHHHHHHHHCCCEE----EE--------EEE----CCCCHHHHHHHHHH--CCEEEEEEEE
Q ss_conf             07999706642---1---589998677649825----99--------852----33344789988620--1402899830
Q gi|254780975|r   87 DIITFHPESSP---H---IRRSLRTIHAMGKKT----GV--------AIN----PETPVAILEDVIDE--IDMILIMTVN  142 (224)
Q Consensus        87 d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Gi--------ai~----p~T~~~~i~~~l~~--~D~vliM~V~  142 (224)
                      +.|-|-.-..+   +   -.++.++++..|+-+    |-        ...    ..|.++....++..  +|.   +.|-
T Consensus        99 ~SVM~DgS~l~~eeNi~~Tk~vv~~ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~---LAva  175 (284)
T PRK12857         99 TSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAFFTDPEEARRFVEETGVDA---LAIA  175 (284)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE---EEHH
T ss_conf             8799728989999999999999999987089158853013676777776630002589999999999879787---7012


Q ss_pred             CCC-----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             677-----6533220135778998654313865269815--89988999999679989997426637
Q gi|254780975|r  143 PGF-----GGQQLIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       143 PG~-----~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      .|.     .|.+-  =-+++++++++..   ++++-.-|  |+..+.++++++.|+.-+-.||.+..
T Consensus       176 iGn~HG~yk~~p~--L~~~~L~~I~~~~---~vPLVLHGgSGi~~e~i~~ai~~Gi~KiNi~T~l~~  237 (284)
T PRK12857        176 IGTAHGPYKGVPK--LDFDRLAKIRELV---NIPLVLHGSSGVPDEAIRKAISLGVRKVNIDTNIRE  237 (284)
T ss_pred             HCCCCCCCCCCCC--CCHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHHCCEEEEECHHHHH
T ss_conf             0566677689885--6999999998616---999897689999999999999809759974879999


No 259
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=93.51  E-value=0.66  Score=26.09  Aligned_cols=187  Identities=16%  Similarity=0.236  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEC-----C---HHHHHHCCC-CC
Q ss_conf             89999999999965998999973426345843417899998641256416856788512-----0---336764047-76
Q gi|254780975|r   16 FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSI-----D---SHINIIADA-GC   86 (224)
Q Consensus        16 ~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P-----~---~~i~~~~~~-g~   86 (224)
                      +-+.+...+.++..|++.+-+.+=--..-.  .-+..++..|+.     ..+|++-+..     +   +..+.-.++ +.
T Consensus        18 y~s~~~~~~ai~aSg~eivTVAlRR~~~~~--~~~~~~l~~i~~-----~~~~iLPNTAGc~tA~EAVr~A~laRE~~~t   90 (246)
T pfam05690        18 YPSPEVLKEAIRASGAEIVTVALRRVNAGQ--PGGENFLDLLDW-----LGITLLPNTAGCRTAEEAVRTARLAREAFGT   90 (246)
T ss_pred             CCCHHHHHHHHHHHCCCEEEEEEEEECCCC--CCCCHHHHHHHH-----CCCEECCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             999999999999968977998986305888--884258886413-----3866777630118899999999999997099


Q ss_pred             CEEEEECCC-----CCCHHHHHHHHHHCCCEEEEEEECCCCHH-HHHHHHHHCCEEEEEEE-ECCCCCCCCC-CHHHHHH
Q ss_conf             079997066-----42158999867764982599852333447-89988620140289983-0677653322-0135778
Q gi|254780975|r   87 DIITFHPES-----SPHIRRSLRTIHAMGKKTGVAINPETPVA-ILEDVIDEIDMILIMTV-NPGFGGQQLI-ESTIPKI  158 (224)
Q Consensus        87 d~i~~H~E~-----~~~~~~~i~~i~~~g~k~Giai~p~T~~~-~i~~~l~~~D~vliM~V-~PG~~Gq~f~-~~~l~kI  158 (224)
                      ++|-+-.-.     .+|+.++++..+.. ++-|...-|++.-+ .+.+-|.++--.-+|-- -|=-+||... +..+..|
T Consensus        91 ~wIKLEVi~D~~~LlPD~~etl~Aae~L-v~eGF~VlpY~~~D~v~akrLed~Gc~avMPlgsPIGSg~Gl~n~~~l~~i  169 (246)
T pfam05690        91 NWIKLEVIGDSKTLLPDPIETLKAAEIL-VKEGFTVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLRNPENLRII  169 (246)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf             7489998269887798878999999999-978998988617998999999875984986224401368886899999999


Q ss_pred             HHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf             998654313865269815899-8899999967998999742663789989999999999
Q gi|254780975|r  159 RQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       159 ~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l  216 (224)
                      ++      +.++.+.||.||. .......-+.|+|-+-+-|||-.++||...++.++.-
T Consensus       170 ~e------~~~vPvIVDAGiG~pS~Aa~aMElG~DaVLvNTAIA~A~dPv~MA~A~~~A  222 (246)
T pfam05690       170 IE------EADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFKLA  222 (246)
T ss_pred             HH------HCCCCEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99------679988984898967889999974567777306777379989999999999


No 260
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.50  E-value=0.67  Score=26.09  Aligned_cols=124  Identities=16%  Similarity=0.252  Sum_probs=76.9

Q ss_pred             CCCCCCEEEEECCC-----------C-----------C----CHHHHHHHHHHC-C--CEEEEEEECCC------CHHHH
Q ss_conf             04776079997066-----------4-----------2----158999867764-9--82599852333------44789
Q gi|254780975|r   82 ADAGCDIITFHPES-----------S-----------P----HIRRSLRTIHAM-G--KKTGVAINPET------PVAIL  126 (224)
Q Consensus        82 ~~~g~d~i~~H~E~-----------~-----------~----~~~~~i~~i~~~-g--~k~Giai~p~T------~~~~i  126 (224)
                      .++|.|-|-+|.-+           +           +    -+.++++.+|+. |  ..+|+-|++..      ++++.
T Consensus       159 ~~AGfDgVEiH~ahGYLl~qFlS~~~N~RtDeYGGS~ENR~Rf~lEii~avr~~vg~d~~v~~Ris~~d~~~~G~~~~d~  238 (338)
T cd04733         159 QEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDA  238 (338)
T ss_pred             HHCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCHHHH
T ss_conf             98399989982365548998629876899685798988998899999999999719988699984535424799998999


Q ss_pred             H---HHHHH--CCEEEEEEE---ECCCCCCCCCC------HHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCC-
Q ss_conf             9---88620--140289983---06776533220------13577899865431386526981589-988999999679-
Q gi|254780975|r  127 E---DVIDE--IDMILIMTV---NPGFGGQQLIE------STIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAG-  190 (224)
Q Consensus       127 ~---~~l~~--~D~vliM~V---~PG~~Gq~f~~------~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~G-  190 (224)
                      .   +.++.  +|++.+-..   .|.+.++....      .-++-.+++|+   ..++.+.+-||+ +.+++..+++.| 
T Consensus       239 ~~~~~~l~~~GvD~i~vs~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~---~~~~Pvi~~G~i~~~~~ae~~l~~g~  315 (338)
T cd04733         239 LEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRK---VTKTPLMVTGGFRTRAAMEQALASGA  315 (338)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHCCC
T ss_conf             999999987699889946885457322477654445675105999999999---84997999899899999999998799


Q ss_pred             CCEEEECHHHHCCCCHHH
Q ss_conf             989997426637899899
Q gi|254780975|r  191 ADLLVVGSSFFNQKGEIS  208 (224)
Q Consensus       191 ad~~V~Gsaif~~~d~~~  208 (224)
                      +|.+..|..+.-+||...
T Consensus       316 ~DlV~~gR~~iadPdl~~  333 (338)
T cd04733         316 VDGIGLARPLALEPDLPN  333 (338)
T ss_pred             CEEHHHHHHHHHCCCHHH
T ss_conf             510898899997905999


No 261
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=93.48  E-value=0.67  Score=26.06  Aligned_cols=158  Identities=18%  Similarity=0.229  Sum_probs=89.5

Q ss_pred             CCCCHHHHHHHHHC--CCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCC---HHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             34178999986412--56416856788512033676404776079997066421---58999867764982599852333
Q gi|254780975|r   47 ISFGADVIRSLRSY--SDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPH---IRRSLRTIHAMGKKTGVAINPET  121 (224)
Q Consensus        47 ~~~~~~~i~~i~~~--t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~---~~~~i~~i~~~g~k~Giai~p~T  121 (224)
                      ++.+.+.+..+|.-  .+.        =+|..+...+.++|+|-||+|......   ..++....+..+.+.-|=.+|. 
T Consensus         5 LsVNid~iAtLRnaRg~~~--------Pd~~~~a~~~~~~Ga~gITvH~R~DrRHI~~~Dv~~l~~~~~~~lNiE~apt-   75 (240)
T PRK05265          5 LGVNIDHIATLRNARGTNY--------PDPVRAALIAEEAGADGITVHLREDRRHIRDRDVRRLRETLKTRLNLEMAAT-   75 (240)
T ss_pred             EEECHHHEEHHHHCCCCCC--------CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEECCCC-
T ss_conf             7323322002341489999--------9999999999983998589526886344662569999986486368711881-


Q ss_pred             CHHHHHHHHH--HCCEEEEEEEECC----CCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHHCCCCE
Q ss_conf             4478998862--0140289983067----765332201357789986543138652--6981589988999999679989
Q gi|254780975|r  122 PVAILEDVID--EIDMILIMTVNPG----FGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSLVQAGADL  193 (224)
Q Consensus       122 ~~~~i~~~l~--~~D~vliM~V~PG----~~Gq~f~~~~l~kI~~l~~~~~~~~~~--I~vDGGvn~~~i~~l~~~Gad~  193 (224)
                        +.+..+.-  ..+++.+.-..|+    -+|+.+.. -.++++.+-+.+.+.++.  +-+|-  +.+.+....+.|+|.
T Consensus        76 --~e~i~ia~~~kP~qvtLVPe~r~e~TTegGld~~~-~~~~L~~~i~~lk~~gIrvSLFiDP--d~~~i~~a~~~Gad~  150 (240)
T PRK05265         76 --EEMLDIALEIKPHQVTLVPEKREELTTEGGLDVAG-QFDKLKPAIARLKDAGIRVSLFIDP--DPEQIEAAAEVGADR  150 (240)
T ss_pred             --HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCEEEEEECC--CHHHHHHHHHHCCCE
T ss_conf             --88999999849985998889988626788937765-7899999999998659817997279--878999999849399


Q ss_pred             EEECHHH----HCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9974266----378998999999999999786
Q gi|254780975|r  194 LVVGSSF----FNQKGEISYAKRLNDLKKSAL  221 (224)
Q Consensus       194 ~V~Gsai----f~~~d~~~~~~~l~~l~~~a~  221 (224)
                      +=.=+.=    +..++.   .+.+..++++|.
T Consensus       151 VElhTG~Ya~a~~~~~~---~~el~~i~~aa~  179 (240)
T PRK05265        151 IELHTGPYADAKTEAEQ---AAELERIAEAAA  179 (240)
T ss_pred             EEEECHHHHHHCCCCHH---HHHHHHHHHHHH
T ss_conf             99834787863575219---999999999999


No 262
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=93.46  E-value=0.68  Score=26.04  Aligned_cols=177  Identities=16%  Similarity=0.184  Sum_probs=106.9

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCEECCC--CCC----CHHHHHHHHHC-CCCEEEEEEEEEE-CCHHHHHHCCCCC
Q ss_conf             88999999999996599899997342634584--341----78999986412-5641685678851-2033676404776
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPN--ISF----GADVIRSLRSY-SDSVFDCHLMISS-IDSHINIIADAGC   86 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn--~~~----~~~~i~~i~~~-t~~~~dvHLMv~~-P~~~i~~~~~~g~   86 (224)
                      +.....+-++.|+++|++++-+---||-....  ..|    ..+.++.+++. .+..+-+.++.-. ....++...++|+
T Consensus        22 s~e~k~~ia~~Ld~aGVd~IEvg~g~g~~~ss~~~g~~~~~d~e~i~~~~~~~~~ak~~~l~~pg~~~~~dl~~a~~~gv  101 (333)
T TIGR03217        22 TIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGA  101 (333)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999999997198989960688888874335788899499999999874248056996478666999999996699


Q ss_pred             CEEEE--ECCCCCCHHHHHHHHHHCCCEEEE--EEECCCCHHHHHHHHHH-----CCEEEEEEEECCCCCCCCCCHHHHH
Q ss_conf             07999--706642158999867764982599--85233344789988620-----1402899830677653322013577
Q gi|254780975|r   87 DIITF--HPESSPHIRRSLRTIHAMGKKTGV--AINPETPVAILEDVIDE-----IDMILIMTVNPGFGGQQLIESTIPK  157 (224)
Q Consensus        87 d~i~~--H~E~~~~~~~~i~~i~~~g~k~Gi--ai~p~T~~~~i~~~l~~-----~D~vliM~V~PG~~Gq~f~~~~l~k  157 (224)
                      +.+-+  |+...+...+.++++|+.|..+..  .....++.+.+......     +|.|-+    +--.|...-..+.+.
T Consensus       102 ~~vri~~~~te~d~~~~~i~~ak~~G~~v~~~~~~s~~~~~e~l~~~a~~~~~~Gad~I~i----~DT~G~~~P~~v~~~  177 (333)
T TIGR03217       102 RTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYI----VDSAGAMLPDDVRDR  177 (333)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE----CCCCCCCCHHHHHHH
T ss_conf             9789863166788899999999976980999975056899999999999998569999997----596446899999999


Q ss_pred             HHHHHHHHH-CCC--CEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf             899865431-386--52698158998899999967998999
Q gi|254780975|r  158 IRQAKALIG-KRS--ISLEVDGGVTSRNIKSLVQAGADLLV  195 (224)
Q Consensus       158 I~~l~~~~~-~~~--~~I~vDGGvn~~~i~~l~~~Gad~~V  195 (224)
                      ++.+|+.++ +..  +...=|=|.-.-|.-...++||+.+=
T Consensus       178 v~~l~~~~~~~i~ig~H~HNnlGlAvANslaAi~aGa~~VD  218 (333)
T TIGR03217       178 VRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRID  218 (333)
T ss_pred             HHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf             99999862997548898617877299999999981999997


No 263
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=93.23  E-value=0.73  Score=25.81  Aligned_cols=90  Identities=21%  Similarity=0.221  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHH--------HHHHHHHCCCCEEEEEEEEEE----------------
Q ss_conf             99999999996599899997342634584341789--------999864125641685678851----------------
Q gi|254780975|r   18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGAD--------VIRSLRSYSDSVFDCHLMISS----------------   73 (224)
Q Consensus        18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~--------~i~~i~~~t~~~~dvHLMv~~----------------   73 (224)
                      -+.++++.|.++|+++||+|=      |.++..++        .++..-+--+..+-+|+.--+                
T Consensus       157 a~~~Ei~~L~~aG~~~IQiDe------P~~~~~~de~~~~~v~~l~~a~~gl~~~~~~HiC~G~~~~~~~~~~~~~~~~~  230 (339)
T PRK09121        157 ILNQEAKELEAAGVDIIQFDE------PAFNVFFDEVNDWGVAALERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEW  230 (339)
T ss_pred             HHHHHHHHHHHCCCCEEEECC------HHHHHCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf             999999999987999898465------67651578889999999999855898671899648988888765322357535


Q ss_pred             --CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf             --203367640477607999706642158999867764982599
Q gi|254780975|r   74 --IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGV  115 (224)
Q Consensus        74 --P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Gi  115 (224)
                        -+..++.+.+.++|.+.+.+.....+.+.+...+.  .++++
T Consensus       231 ~~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~l~~~~~--k~v~l  272 (339)
T PRK09121        231 RQYEEAFPKLQKSNIDIISLECHNSHVPMDLLELIRG--KKVMV  272 (339)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCC--CEEEE
T ss_conf             6589999999866898899963799983568873478--86874


No 264
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=93.13  E-value=0.099  Score=31.36  Aligned_cols=134  Identities=19%  Similarity=0.287  Sum_probs=78.5

Q ss_pred             CCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf             98999973426345843417899998641256416856788512033676404-77607999706642158999867764
Q gi|254780975|r   31 AKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIAD-AGCDIITFHPESSPHIRRSLRTIHAM  109 (224)
Q Consensus        31 ~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~-~g~d~i~~H~E~~~~~~~~i~~i~~~  109 (224)
                      .--+-+||.|-=   -    |-.-+.||.+   .-||   .+||-.|.+++++ .|||+||+|.=+|.-..      +..
T Consensus       115 pPvvtfDvFDiP---~----PgLpkpiR~h---f~DV---medP~eWArKcVK~fGAdmvTiHlIsTdPk~------~Dk  175 (401)
T TIGR00381       115 PPVVTFDVFDIP---M----PGLPKPIREH---FEDV---MEDPAEWARKCVKEFGADMVTIHLISTDPKV------KDK  175 (401)
T ss_pred             CCEEEEEECCCC---C----CCCCHHHHHH---HHHH---HCCHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCC
T ss_conf             687787513687---5----7876677776---5663---0283358888887627663886443378854------688


Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHH----HHHCCCCEEEEECCCCHHHHHH
Q ss_conf             982599852333447899886201402899830677653322013577899865----4313865269815899889999
Q gi|254780975|r  110 GKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKA----LIGKRSISLEVDGGVTSRNIKS  185 (224)
Q Consensus       110 g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~----~~~~~~~~I~vDGGvn~~~i~~  185 (224)
                              .|.--...++.+|.-||.=+|.+   |-|...-+|.+|+|-.|..+    ++-..+++  .    ..+.+..
T Consensus       176 --------sp~EAaK~~EdvLQAVdvP~viG---GSGnpeKDPlVLEkaAEvAEGeR~lLASAnLd--l----Dy~kia~  238 (401)
T TIGR00381       176 --------SPKEAAKVLEDVLQAVDVPLVIG---GSGNPEKDPLVLEKAAEVAEGERCLLASANLD--L----DYKKIAN  238 (401)
T ss_pred             --------CHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCC--C----CHHHHHH
T ss_conf             --------72247889998763406775774---78888667578998843113621645413513--4----5789999


Q ss_pred             HHHCCCCEEEECHHHH
Q ss_conf             9967998999742663
Q gi|254780975|r  186 LVQAGADLLVVGSSFF  201 (224)
Q Consensus       186 l~~~Gad~~V~Gsaif  201 (224)
                      ... .-|+.|+.=++-
T Consensus       239 AA~-ky~H~VLsW~~m  253 (401)
T TIGR00381       239 AAL-KYDHVVLSWAIM  253 (401)
T ss_pred             HHH-HCCCEEEEHHHC
T ss_conf             985-349807761112


No 265
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.12  E-value=0.76  Score=25.71  Aligned_cols=123  Identities=15%  Similarity=0.269  Sum_probs=75.8

Q ss_pred             HHCCCCCCEEEEECCCC--------------------------CCHHHHHHHHHHC---CCEEEEEEECCCC------HH
Q ss_conf             64047760799970664--------------------------2158999867764---9825998523334------47
Q gi|254780975|r   80 IIADAGCDIITFHPESS--------------------------PHIRRSLRTIHAM---GKKTGVAINPETP------VA  124 (224)
Q Consensus        80 ~~~~~g~d~i~~H~E~~--------------------------~~~~~~i~~i~~~---g~k~Giai~p~T~------~~  124 (224)
                      ...++|.|-|-+|.-..                          .-+.++++.+|+.   ...+|+=++|...      ++
T Consensus       149 ~A~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtD~YGGs~eNR~Rf~~eii~air~~vg~df~vgvRls~~d~~~~g~~~~  228 (327)
T cd02803         149 RAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLE  228 (327)
T ss_pred             HHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHCCCCCCCHH
T ss_conf             99984999899835766188872175469877778889899989999999999997398876179977021268999989


Q ss_pred             HH---HHHHHH--CCEEEEEEEE---C------CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHC
Q ss_conf             89---988620--1402899830---6------77653322013577899865431386526981589-98899999967
Q gi|254780975|r  125 IL---EDVIDE--IDMILIMTVN---P------GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQA  189 (224)
Q Consensus       125 ~i---~~~l~~--~D~vliM~V~---P------G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~  189 (224)
                      ..   .+.|..  +|+|.+-.-.   +      ...++.+.   ++-.+.+|+.   .++.+.+-|++ +.+.+..+++.
T Consensus       229 e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~~---~~~~~~ik~~---~~~pvi~~G~i~~~~~a~~~l~~  302 (327)
T cd02803         229 EAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYF---LELAEKIKKA---VKIPVIAVGGIRDPEVAEEILAE  302 (327)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHC
T ss_conf             99999999985599989977784566754467877775223---8999999997---69819998998999999999988


Q ss_pred             C-CCEEEECHHHHCCCCHHH
Q ss_conf             9-989997426637899899
Q gi|254780975|r  190 G-ADLLVVGSSFFNQKGEIS  208 (224)
Q Consensus       190 G-ad~~V~Gsaif~~~d~~~  208 (224)
                      | +|.+-.|.++..+||...
T Consensus       303 g~~D~V~~gR~~iadPd~~~  322 (327)
T cd02803         303 GKADLVALGRALLADPDLPN  322 (327)
T ss_pred             CCCCHHHHHHHHHHCCCHHH
T ss_conf             99312586699997914999


No 266
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.11  E-value=0.77  Score=25.69  Aligned_cols=145  Identities=15%  Similarity=0.201  Sum_probs=89.0

Q ss_pred             HHHHHHCCCCEEEEEEEEEE-CC---HHHHHHCCCCCCEEEEECCCCCCH----HHHHHHHHHCCCEEEEEEECCCCHHH
Q ss_conf             99864125641685678851-20---336764047760799970664215----89998677649825998523334478
Q gi|254780975|r   54 IRSLRSYSDSVFDCHLMISS-ID---SHINIIADAGCDIITFHPESSPHI----RRSLRTIHAMGKKTGVAINPETPVAI  125 (224)
Q Consensus        54 i~~i~~~t~~~~dvHLMv~~-P~---~~i~~~~~~g~d~i~~H~E~~~~~----~~~i~~i~~~g~k~Giai~p~T~~~~  125 (224)
                      ++++.+...-+.-..|.+.. ++   ..++...++|+.-+.++..+-...    -+.++++++.=..+ +.+.-=...+.
T Consensus       107 lEei~~~~~~~~wfQLY~~~d~~~~~~li~rA~~aG~~al~lTvD~p~~g~R~~w~~i~~l~~~~~~p-~i~KGi~~~~D  185 (299)
T cd02809         107 LEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGP-LILKGILTPED  185 (299)
T ss_pred             HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC-EEEECCCCHHH
T ss_conf             89999744898467764369999999999999985999899970589878879999999999866998-79972788999


Q ss_pred             HHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECH-HHHC
Q ss_conf             9988620-140289983067765332201357789986543138652698158998-899999967998999742-6637
Q gi|254780975|r  126 LEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGS-SFFN  202 (224)
Q Consensus       126 i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gs-aif~  202 (224)
                      -..-.+. +|.|.+ | |-|----...|.+++-+.++++... ..++|.+||||+. ..+-+....|||.+-+|. .+|.
T Consensus       186 A~~a~~~G~dgI~V-S-NHGGRqlD~~p~~i~~L~~i~~~v~-~~~~v~~DgGvR~G~Dv~KAlaLGA~~V~iGRp~l~~  262 (299)
T cd02809         186 ALRAVDAGADGIVV-S-NHGGRQLDGAPATIDALPEIVAAVG-GRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYG  262 (299)
T ss_pred             HHHHHHCCCCEEEE-C-CCCCCCCCCCCCHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf             99999859988997-2-8873336888778999999999854-6728997188475368999997699889877899999


No 267
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with  similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=93.07  E-value=0.78  Score=25.66  Aligned_cols=152  Identities=16%  Similarity=0.272  Sum_probs=80.0

Q ss_pred             CCHHHHHHHH-HCCCCE--EEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHH-HHHCCC----EEEEEEEC-
Q ss_conf             1789999864-125641--68567885120336764047760799970664215899986-776498----25998523-
Q gi|254780975|r   49 FGADVIRSLR-SYSDSV--FDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRT-IHAMGK----KTGVAINP-  119 (224)
Q Consensus        49 ~~~~~i~~i~-~~t~~~--~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~-i~~~g~----k~Giai~p-  119 (224)
                      ||-..+.++. ++..++  +.-|+--.=..+.+..+... ++.-.+|.=....+.+.++. +.+.+.    ++-|=+|. 
T Consensus        49 fGENrvQE~~~K~~~l~~~i~WHfIG~LQsNKvk~i~~~-~~~~~IhSvDs~kla~~l~~~~~~~~~~~~l~vliQVNi~  127 (227)
T cd06822          49 FGENYVQELIEKAPDLPIDIKWHFIGHLQSNKVKKLLKV-PNLYMVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTS  127 (227)
T ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC-CCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf             288609999999984532545999645324348999706-7744664157499999999999973688870699997027


Q ss_pred             ------CCCHHHHHHHH-------HHCCEEEEEEEEC-CCCCCCCCCHHHHHHHHHHHHHH-CCCCE---EEEECCCCHH
Q ss_conf             ------33447899886-------2014028998306-77653322013577899865431-38652---6981589988
Q gi|254780975|r  120 ------ETPVAILEDVI-------DEIDMILIMTVNP-GFGGQQLIESTIPKIRQAKALIG-KRSIS---LEVDGGVTSR  181 (224)
Q Consensus       120 ------~T~~~~i~~~l-------~~~D~vliM~V~P-G~~Gq~f~~~~l~kI~~l~~~~~-~~~~~---I~vDGGvn~~  181 (224)
                            +.+++.+..++       +.+...-+||+-| +..-..-....+.+.+++++.+. +.+..   .+.-=|.+ .
T Consensus       128 ~E~~K~G~~~~e~~~~~~~i~~~~~~l~i~GLMti~p~~~~~~~~~~~~F~~l~~l~~~l~~~~~~~~~~~eLSMGMS-~  206 (227)
T cd06822         128 GEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGMS-A  206 (227)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHH-H
T ss_conf             864568989999999999999868997688999869899880022139999999999999997499999798868536-5


Q ss_pred             HHHHHHHCCCCEEEECHHHHC
Q ss_conf             999999679989997426637
Q gi|254780975|r  182 NIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       182 ~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      ..+..++.|++.+=+||+||+
T Consensus       207 Dye~AIe~GsT~VRIGs~IFG  227 (227)
T cd06822         207 DFEHAIEMGSTNVRVGSAIFG  227 (227)
T ss_pred             HHHHHHHCCCCEEECCCHHCC
T ss_conf             799999879997983713109


No 268
>PRK08227 aldolase; Validated
Probab=93.05  E-value=0.78  Score=25.64  Aligned_cols=142  Identities=9%  Similarity=0.052  Sum_probs=81.7

Q ss_pred             CCCCEEEEEEEEEEC-----CH-----HHHHHCCCCCCEEEEECCC--------CCCHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             256416856788512-----03-----3676404776079997066--------42158999867764982599852333
Q gi|254780975|r   60 YSDSVFDCHLMISSI-----DS-----HINIIADAGCDIITFHPES--------SPHIRRSLRTIHAMGKKTGVAINPET  121 (224)
Q Consensus        60 ~t~~~~dvHLMv~~P-----~~-----~i~~~~~~g~d~i~~H~E~--------~~~~~~~i~~i~~~g~k~Giai~p~T  121 (224)
                      ..+..+=+|+=..+.     ..     -+++-+..|||.|++|.--        ..++-++...+...|+-.-...-+..
T Consensus        99 ~~~~~lil~~s~~t~~~~~~~~k~lv~sVeeAvrlGAdAVsv~v~iGs~~E~~~l~~lg~v~~e~~~~GmPlla~~~~g~  178 (291)
T PRK08227         99 ATNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNVCAVAAQVFIGSEYETQSIKNIIQLVDAGLRYGMPTMAVTAVGK  178 (291)
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCEEEECHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             79940799980687666787887555349999867997899986359932899999999999999982998799834687


Q ss_pred             CHHHHHHHHHH---------CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC------HHHHHHH
Q ss_conf             44789988620---------14028998306776533220135778998654313865269815899------8899999
Q gi|254780975|r  122 PVAILEDVIDE---------IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT------SRNIKSL  186 (224)
Q Consensus       122 ~~~~i~~~l~~---------~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn------~~~i~~l  186 (224)
                      +...=..++..         .|.|=+     -     +-++.+++|..      .-.+++-+-||=.      .+.....
T Consensus       179 ~~~~d~~~va~aaRia~ELGADiVKt-----~-----yt~e~f~~Vv~------a~pvPVliaGG~k~~d~e~L~~v~~a  242 (291)
T PRK08227        179 DMVRDARYFSLATRIAAEMGAQIIKT-----Y-----YVEKGFERITA------GCPVPIVIAGGKKLPERDALEMCYQA  242 (291)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEC-----C-----CCHHHHHHHHH------CCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf             77777899999999999978998850-----6-----97345999996------48997899679989869999999999


Q ss_pred             HHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
Q ss_conf             9679989997426637899899999999999
Q gi|254780975|r  187 VQAGADLLVVGSSFFNQKGEISYAKRLNDLK  217 (224)
Q Consensus       187 ~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l~  217 (224)
                      .++|+--++.|.-||..+||....+.|..+-
T Consensus       243 ~~aGa~Gv~~GRNVfQ~~~P~~~~~Al~~iV  273 (291)
T PRK08227        243 IDQGASGVDMGRNIFQSDAPVAMIKAVHAVV  273 (291)
T ss_pred             HHCCCCEEEECCHHHCCCCHHHHHHHHHHHH
T ss_conf             9769936872400235899899999999986


No 269
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=93.05  E-value=0.78  Score=25.64  Aligned_cols=113  Identities=18%  Similarity=0.272  Sum_probs=78.9

Q ss_pred             CCHHHHHHHHHHCCCEEEEEEECCCCHH-HHHHHHHHCCEEEEEEE-ECCCCCCCCC-CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             2158999867764982599852333447-89988620140289983-0677653322-0135778998654313865269
Q gi|254780975|r   97 PHIRRSLRTIHAMGKKTGVAINPETPVA-ILEDVIDEIDMILIMTV-NPGFGGQQLI-ESTIPKIRQAKALIGKRSISLE  173 (224)
Q Consensus        97 ~~~~~~i~~i~~~g~k~Giai~p~T~~~-~i~~~l~~~D~vliM~V-~PG~~Gq~f~-~~~l~kI~~l~~~~~~~~~~I~  173 (224)
                      +|+.++++..+.. ++-|...-|+|.-+ .+.+-|.++--.-+|-- -|=-+||... +..+..|+      .+.++.+.
T Consensus       121 PD~~etl~Aae~L-v~eGF~VlpY~~dD~v~akrLe~~Gc~avMPlgsPIGSg~Gl~n~~~l~~i~------e~~~vPvI  193 (267)
T CHL00162        121 PDPIGTLKAAEFL-VRKGFTVLPYINADPVLAKQLEDIGCATVMPLGSPIGSGQGLQNLLNLQIII------ENAKIPVI  193 (267)
T ss_pred             CCHHHHHHHHHHH-HHCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHH------HCCCCCEE
T ss_conf             8878999999999-9789999895489989999998659868863455123688758999999999------64899889


Q ss_pred             EECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf             815899-8899999967998999742663789989999999999
Q gi|254780975|r  174 VDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       174 vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l  216 (224)
                      ||.||. ...+...-+.|+|-+-+-|||-.++||...++.++.-
T Consensus       194 VDAGiG~pSdAa~aMElG~DaVL~NTAIA~A~dPv~MA~A~k~A  237 (267)
T CHL00162        194 IDAGIGTPSEASQAMELGASGVLLNTAVAKAKNPEQMAKAMKLA  237 (267)
T ss_pred             EECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
T ss_conf             96898967888999974677787016767169989999999999


No 270
>PRK08999 hypothetical protein; Provisional
Probab=92.92  E-value=0.81  Score=25.52  Aligned_cols=175  Identities=15%  Similarity=0.167  Sum_probs=99.4

Q ss_pred             EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC--HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCC
Q ss_conf             881706325889999999999965998999973426345843417--899998641256416856788512033676404
Q gi|254780975|r    6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG--ADVIRSLRSYSDSVFDCHLMISSIDSHINIIAD   83 (224)
Q Consensus         6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~--~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~   83 (224)
                      .|+|+ ...+...+.+.+++..+.|+.++++=-      |+++-.  ....+.+.... ....+-|+++++......   
T Consensus       134 ~IT~~-~~~~~~~~l~~l~~al~~G~~liQlR~------K~l~~~~~~~~a~~~~~lc-~~~~a~liiN~~~~~a~~---  202 (312)
T PRK08999        134 LITPA-AEHDLAELLAGLERALAAGIRLIQLRA------PQMPPAAYRDLAREAVGLC-RRAGAQLLLNGDIALAED---  202 (312)
T ss_pred             EECCC-CCCCHHHHHHHHHHHHHCCCEEEEEEC------CCCCHHHHHHHHHHHHHHH-HHCCCEEEEECCHHHHHH---
T ss_conf             83267-754769999999988635784999987------8899799999999999999-972988999798899985---


Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH-HHCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf             77607999706642158999867764982599852333447899886-20140289983067765332201357789986
Q gi|254780975|r   84 AGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVI-DEIDMILIMTVNPGFGGQQLIESTIPKIRQAK  162 (224)
Q Consensus        84 ~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l-~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~  162 (224)
                      .++|  .+|..+.. +...-..-...+..+|.+-+.   .+.+..-- .-+||+++=-|.|--+-..-.+--.++.++  
T Consensus       203 ~~ad--GVHL~~~~-L~~~~~Rpl~~~~~vgaScH~---~~e~~~A~~~g~Dyi~lsPV~~T~shp~~~~lGw~~f~~--  274 (312)
T PRK08999        203 LPAD--GVHLTSAQ-LAKLAARPLPAGRWVAASCHN---AEELAHAQQLGVDFAVLSPVQPTASHPGAPPLGWDGFAA--  274 (312)
T ss_pred             CCCC--EEECCHHH-HHHHHCCCCCCCCEEEEECCC---HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHH--
T ss_conf             7997--79779899-767632778899889996299---999999987089969981544647899999678999999--


Q ss_pred             HHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf             54313865269815899889999996799899974266
Q gi|254780975|r  163 ALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSF  200 (224)
Q Consensus       163 ~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai  200 (224)
                       +....++.+..=||++.++++.+.++||.-+-+=|++
T Consensus       275 -l~~~~~iPv~ALGGi~~~dl~~a~~~Ga~GiA~Ir~~  311 (312)
T PRK08999        275 -LIAGVPLPVYALGGMGPGDLEEAREHGAQGIAGIRGF  311 (312)
T ss_pred             -HHHHCCCCEEEECCCCHHHHHHHHHHCCEEEEEEEEC
T ss_conf             -9973899989988889999999998099699776315


No 271
>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=92.76  E-value=0.86  Score=25.38  Aligned_cols=118  Identities=18%  Similarity=0.297  Sum_probs=72.7

Q ss_pred             CCCCEEEEE--CC--CCCCHHHHHHHHHHC--CCEEEEEEECCCCHHHHHHHHH--HCCEEEEEEEECCCCC--CCCCCH
Q ss_conf             776079997--06--642158999867764--9825998523334478998862--0140289983067765--332201
Q gi|254780975|r   84 AGCDIITFH--PE--SSPHIRRSLRTIHAM--GKKTGVAINPETPVAILEDVID--EIDMILIMTVNPGFGG--QQLIES  153 (224)
Q Consensus        84 ~g~d~i~~H--~E--~~~~~~~~i~~i~~~--g~k~Giai~p~T~~~~i~~~l~--~~D~vliM~V~PG~~G--q~f~~~  153 (224)
                      .|.|.++-.  .+  +.+++.+++..+|+.  |+.+|+=+-.....+.+.-.+.  ..|+|.+=+-+=|-+.  +.|...
T Consensus       170 ~G~d~iSP~~h~di~s~edL~~~I~~Lr~~~~~~PVgvKl~~~~~~~~ia~~~aka~~D~I~IdG~eGGTGAaP~~~~d~  249 (367)
T pfam01645       170 PGVGLISPPPHHDIYSIEDLAQLIYDLKEINPKAPISVKLVSGHGVGTIAAGVAKAGADIILIDGHDGGTGASPKTSIKH  249 (367)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHH
T ss_conf             99876786334788999999999999984178994599981477689999987536788899717898677554889974


Q ss_pred             ----HHHHHHHHHHHHHC----CCCEEEEECCCC-HHHHHHHHHCCCCEEEECHH-HH
Q ss_conf             ----35778998654313----865269815899-88999999679989997426-63
Q gi|254780975|r  154 ----TIPKIRQAKALIGK----RSISLEVDGGVT-SRNIKSLVQAGADLLVVGSS-FF  201 (224)
Q Consensus       154 ----~l~kI~~l~~~~~~----~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsa-if  201 (224)
                          ...-+.+..+.+.+    ..+.+.++||+. ...+.+....|||.+..|++ +|
T Consensus       250 ~GlP~~~~L~~~~~~L~~~glR~~V~liasGgl~t~~Dv~ka~aLGAD~v~~gt~~m~  307 (367)
T pfam01645       250 AGLPWELALAEVHQTLVENGLRDRVSLIADGGLRTGADVAKAAALGADAVYIGTAALI  307 (367)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             4246999999999999870675764999769978889999999856535423479999


No 272
>pfam00121 TIM Triosephosphate isomerase.
Probab=92.71  E-value=0.87  Score=25.34  Aligned_cols=184  Identities=15%  Similarity=0.270  Sum_probs=103.7

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECC----------HHHHHHCCC
Q ss_conf             8899999999999659989999734263458434178999986412564168567885120----------336764047
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSID----------SHINIIADA   84 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~----------~~i~~~~~~   84 (224)
                      +.....+-++.+.+...+.-.+++   ..+|.+++=....+.++ .+++    ++-.+|..          -=.+++.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~v---~i~Pp~~~L~~~~~~~~-~~~i----~igaQn~~~~~~Ga~TGeiSa~mL~d~   83 (243)
T pfam00121        12 TLAEALELAKALLAAALKNDGVEV---VVAPPFTYLSPVSQALK-GSNI----KVGAQNVSAEDSGAFTGEVSAEMLKDL   83 (243)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCEE---EEECCHHHHHHHHHHHC-CCCC----EEEECCCCCCCCCCCCCCCHHHHHHHC
T ss_conf             999999999999863467789569---99799999999999845-8996----798323545678887476539999975


Q ss_pred             CCCEEEE-EC-------CCCCCHHHHHHHHHHCCCEEEEEEECC-------CCH----HHHHHHHHHCCEE----EEEEE
Q ss_conf             7607999-70-------664215899986776498259985233-------344----7899886201402----89983
Q gi|254780975|r   85 GCDIITF-HP-------ESSPHIRRSLRTIHAMGKKTGVAINPE-------TPV----AILEDVIDEIDMI----LIMTV  141 (224)
Q Consensus        85 g~d~i~~-H~-------E~~~~~~~~i~~i~~~g~k~Giai~p~-------T~~----~~i~~~l~~~D~v----liM~V  141 (224)
                      |++++.+ |.       |+.+.+..-+..+.+.|..+-+.+.-.       ...    +.+...++.++.-    ++..-
T Consensus        84 g~~yviiGHSERR~~f~Etd~~I~~K~~~al~~~l~pIlCiGEt~~~r~~~~~~~~l~~Ql~~~l~~i~~~~~~~iiIAY  163 (243)
T pfam00121        84 GVSYVIIGHSERRQYFGETDEIVAKKVKAALKLGLTPVLCVGETLEEREAGKTLEVLKRQLKAILAGLDEEALKNLIIAY  163 (243)
T ss_pred             CCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCEEEEE
T ss_conf             99989984489898829988999999999998799399994671664435678999999999999678987715639996


Q ss_pred             ECCC---CCCCCCCHHHHHH-HHHHHHHH------CCCCEEEEECCCCHHHHHHHHH-CCCCEEEECHHHHCCCCH
Q ss_conf             0677---6533220135778-99865431------3865269815899889999996-799899974266378998
Q gi|254780975|r  142 NPGF---GGQQLIESTIPKI-RQAKALIG------KRSISLEVDGGVTSRNIKSLVQ-AGADLLVVGSSFFNQKGE  206 (224)
Q Consensus       142 ~PG~---~Gq~f~~~~l~kI-~~l~~~~~------~~~~~I~vDGGvn~~~i~~l~~-~Gad~~V~Gsaif~~~d~  206 (224)
                      +|=.   +|+.-.+.-++++ +.+|+.+.      ..+++|---|+||.+|+.++.. .++|-+-+|+|-.+.++.
T Consensus       164 EPvWAIGtG~~as~~~i~~~~~~Ir~~l~~~~~~~~~~i~iLYGGSVn~~N~~~i~~~~~vdG~LVGgASL~~~~F  239 (243)
T pfam00121       164 EPVWAIGTGKVATPEQAQEVHAFIRKYLAELSKEVAEEVRILYGGSVNPDNAKELLAQPDIDGFLVGGASLKAESF  239 (243)
T ss_pred             CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCEEEECCCCHHHHHHHHCCCCCCEEEECHHHCCHHHH
T ss_conf             7822248999999999999999999999984542316642897176899899999668899879841686797888


No 273
>PRK00208 thiG thiazole synthase; Reviewed
Probab=92.60  E-value=0.9  Score=25.25  Aligned_cols=185  Identities=16%  Similarity=0.238  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEC-----C---HHHHHHCCC-CCCE
Q ss_conf             999999999965998999973426345843417899998641256416856788512-----0---336764047-7607
Q gi|254780975|r   18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSI-----D---SHINIIADA-GCDI   88 (224)
Q Consensus        18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P-----~---~~i~~~~~~-g~d~   88 (224)
                      +.+..-+.++..|.+.+-+.+=--..- +- =+..+++.|.     +..+|++-+..     +   +..+.-.++ +.++
T Consensus        22 s~~~~~~ai~aSg~eivTVAlRR~~~~-~~-~~~~~l~~i~-----~~~~~lLPNTAGc~ta~EAVr~A~laRE~~~tnw   94 (256)
T PRK00208         22 SPEVMQEAIEASGAEIVTVALRRVNLG-DP-GGDNLLDLLD-----PLGVTLLPNTAGCRTAEEAVRTARLAREALGTDW   94 (256)
T ss_pred             CHHHHHHHHHHHCCCEEEEEEEEECCC-CC-CCHHHHHHHC-----CCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf             999999999996897799998642477-89-8505888743-----1585676664032679999999999999848986


Q ss_pred             EEEECCC-----CCCHHHHHHHHHHCCCEEEEEEECCCCHH-HHHHHHHHCCEEEEEEE-ECCCCCCCCC-CHHHHHHHH
Q ss_conf             9997066-----42158999867764982599852333447-89988620140289983-0677653322-013577899
Q gi|254780975|r   89 ITFHPES-----SPHIRRSLRTIHAMGKKTGVAINPETPVA-ILEDVIDEIDMILIMTV-NPGFGGQQLI-ESTIPKIRQ  160 (224)
Q Consensus        89 i~~H~E~-----~~~~~~~i~~i~~~g~k~Giai~p~T~~~-~i~~~l~~~D~vliM~V-~PG~~Gq~f~-~~~l~kI~~  160 (224)
                      |-+-.-.     .+|+.++++..+.. ++-|...-|++.-+ .+.+-|.++--.-+|-- -|=-+||... +..++.|++
T Consensus        95 IKLEVi~D~~~LlPD~~etl~Aae~L-v~eGF~VlpY~~~D~v~akrLe~~Gc~avMPlgsPIGSg~Gl~n~~~l~~i~e  173 (256)
T PRK00208         95 IKLEVIGDDKTLLPDPIETLKAAEIL-VKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIE  173 (256)
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99998179767798868999999999-98899897867889899999997495345204564347988799999999998


Q ss_pred             HHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf             8654313865269815899-8899999967998999742663789989999999999
Q gi|254780975|r  161 AKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       161 l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l  216 (224)
                            +.++.+.||.||. ...+...-+.|+|-+-+-|||-.++||...++.++.-
T Consensus       174 ------~~~vPvIVDAGiG~pS~Aa~AMElG~DaVL~NTAIA~A~dPv~MA~A~~~A  224 (256)
T PRK00208        174 ------QADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLA  224 (256)
T ss_pred             ------HCCCCEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHH
T ss_conf             ------679988985788976678999862554323556877269989999999999


No 274
>KOG3055 consensus
Probab=92.47  E-value=0.25  Score=28.81  Aligned_cols=31  Identities=42%  Similarity=0.658  Sum_probs=11.4

Q ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             6981589988999999679989997426637
Q gi|254780975|r  172 LEVDGGVTSRNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       172 I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      +||-||||.+|.....+.||..+++-|.+|+
T Consensus        85 LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~  115 (263)
T KOG3055          85 LQVGGGINSENCMSWLEEGASKVIVTSWLFN  115 (263)
T ss_pred             EEECCCCCHHHHHHHHHHCCCEEEEEEEECC
T ss_conf             3554861768889999825764899997515


No 275
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=92.36  E-value=0.78  Score=25.65  Aligned_cols=105  Identities=14%  Similarity=0.245  Sum_probs=57.8

Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCEEEE-E--EECCEE-CCCCCCCHHHHHHHHHCCCCEEEEEEEEE-E----CCHHHHHH
Q ss_conf             63258899999999999659989999-7--342634-58434178999986412564168567885-1----20336764
Q gi|254780975|r   11 ILAADFSRLGEEISNITKAGAKQIHF-D--VMDGCF-VPNISFGADVIRSLRSYSDSVFDCHLMIS-S----IDSHINII   81 (224)
Q Consensus        11 il~~d~~~l~~~i~~l~~~~~d~iHi-D--ImDg~f-vpn~~~~~~~i~~i~~~t~~~~dvHLMv~-~----P~~~i~~~   81 (224)
                      .-..+...+.++++.+.+.+.+.+.+ +  +.|+.+ ..+...-.++++.+++......+.++.+. +    .+..++.+
T Consensus        27 ~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~e~l~~l  106 (216)
T smart00729       27 LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEAL  106 (216)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHH
T ss_conf             45759999999999999708976530011002468988899999999999998514356269999706021589999999


Q ss_pred             CCCCCCEEEEECCCCC--------------CHHHHHHHHHHCC-CEEEE
Q ss_conf             0477607999706642--------------1589998677649-82599
Q gi|254780975|r   82 ADAGCDIITFHPESSP--------------HIRRSLRTIHAMG-KKTGV  115 (224)
Q Consensus        82 ~~~g~d~i~~H~E~~~--------------~~~~~i~~i~~~g-~k~Gi  115 (224)
                      .++|.+.+.+=.|+.+              +..+.++.+++.| ..++.
T Consensus       107 ~~~g~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~~~~~~  155 (216)
T smart00729      107 KEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVST  155 (216)
T ss_pred             HHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             9849986666735507899987179999999999999999858936877


No 276
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.33  E-value=0.97  Score=25.04  Aligned_cols=185  Identities=16%  Similarity=0.247  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEE-----CCH---HHHHHCCC-CCCE
Q ss_conf             99999999996599899997342634584341789999864125641685678851-----203---36764047-7607
Q gi|254780975|r   18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISS-----IDS---HINIIADA-GCDI   88 (224)
Q Consensus        18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~-----P~~---~i~~~~~~-g~d~   88 (224)
                      +.+...+.++..|.+.+-+.+=--..-.  .-+..+++.|++     ..++++-+.     .+.   ..+.-.++ +.++
T Consensus        21 s~~~~~~ai~aSgaeivTVAlRR~~~~~--~~~~~~l~~i~~-----~~~~~LPNTAGc~ta~EAvr~A~laRE~~~t~~   93 (248)
T cd04728          21 SPAIMKEAIEASGAEIVTVALRRVNIGD--PGGESFLDLLDK-----SGYTLLPNTAGCRTAEEAVRTARLAREALGTDW   93 (248)
T ss_pred             CHHHHHHHHHHHCCCEEEEEEEECCCCC--CCCHHHHHHHHH-----CCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf             9999999999968976999986305788--885268987523-----386687654011679999999999999848986


Q ss_pred             EEEECCC-----CCCHHHHHHHHHHCCCEEEEEEECCCCHH-HHHHHHHHCCEEEEEEE-ECCCCCCCCC-CHHHHHHHH
Q ss_conf             9997066-----42158999867764982599852333447-89988620140289983-0677653322-013577899
Q gi|254780975|r   89 ITFHPES-----SPHIRRSLRTIHAMGKKTGVAINPETPVA-ILEDVIDEIDMILIMTV-NPGFGGQQLI-ESTIPKIRQ  160 (224)
Q Consensus        89 i~~H~E~-----~~~~~~~i~~i~~~g~k~Giai~p~T~~~-~i~~~l~~~D~vliM~V-~PG~~Gq~f~-~~~l~kI~~  160 (224)
                      |-+-.-.     .+|+.++++..+.. ++-|...-|++.-+ .+.+-|.++--.-+|-- -|=-+||.+. +..+..|+ 
T Consensus        94 IKLEVi~D~~~LlPD~~eTl~Aae~L-v~~GF~VlpY~~~D~v~akrLe~~Gc~avMPlgsPIGSg~Gl~n~~~l~~i~-  171 (248)
T cd04728          94 IKLEVIGDDKTLLPDPIETLKAAEIL-VKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIII-  171 (248)
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHH-
T ss_conf             99998179767798868999999999-9889989786788999999999749534520456434798879999999999-


Q ss_pred             HHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf             8654313865269815899-8899999967998999742663789989999999999
Q gi|254780975|r  161 AKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       161 l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l  216 (224)
                        +   +.++.+.||.||. .......-+.|+|-+-+-|||-.++||...++.++.-
T Consensus       172 --e---~~~vPvIVDAGiG~pS~Aa~aMElG~daVL~NTAIA~A~dPv~MA~A~~~A  223 (248)
T cd04728         172 --E---RADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLA  223 (248)
T ss_pred             --H---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHH
T ss_conf             --8---479988984799975678999872655334546877169989999999999


No 277
>pfam04055 Radical_SAM Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.
Probab=92.30  E-value=0.98  Score=25.01  Aligned_cols=84  Identities=14%  Similarity=0.122  Sum_probs=48.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEE--CC-HHHHHHCCCCCCEE
Q ss_conf             2588999999999996599899997342634584341789999864125641685678851--20-33676404776079
Q gi|254780975|r   13 AADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISS--ID-SHINIIADAGCDII   89 (224)
Q Consensus        13 ~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~--P~-~~i~~~~~~g~d~i   89 (224)
                      ......+.++++...+.+...+  -+.+|.+..+..+.................+++-+..  +. ++++.+.++|.+.+
T Consensus        27 ~~~~~~i~~~~~~~~~~~~~~i--~~~gg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~g~~~i  104 (165)
T pfam04055        27 ELSPEEILEEAKELARLGVEVV--ILTGGEPLLLPDLVELLERLLKLEELEGIRITLETNGTLLDEELLEELKEAGLDRV  104 (165)
T ss_pred             CCCHHHHHHHHHHHHHCCCEEE--EEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCC
T ss_conf             2699999999988874598599--99316766652777778887653146764899998514331045689997198522


Q ss_pred             EEECCCCCC
Q ss_conf             997066421
Q gi|254780975|r   90 TFHPESSPH   98 (224)
Q Consensus        90 ~~H~E~~~~   98 (224)
                      .+..|+..+
T Consensus       105 ~~~ie~~~~  113 (165)
T pfam04055       105 SISLQSGDD  113 (165)
T ss_pred             CCCCCCCCH
T ss_conf             246355999


No 278
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946   This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=92.10  E-value=0.29  Score=28.41  Aligned_cols=170  Identities=21%  Similarity=0.288  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHCCCCEEEE----EEECCEECCCCCCCHHHHHHHHHCCCCEE-----EEEEEEEECCH--HHHHHCCC
Q ss_conf             899999999999659989999----73426345843417899998641256416-----85678851203--36764047
Q gi|254780975|r   16 FSRLGEEISNITKAGAKQIHF----DVMDGCFVPNISFGADVIRSLRSYSDSVF-----DCHLMISSIDS--HINIIADA   84 (224)
Q Consensus        16 ~~~l~~~i~~l~~~~~d~iHi----DImDg~fvpn~~~~~~~i~~i~~~t~~~~-----dvHLMv~~P~~--~i~~~~~~   84 (224)
                      .-++++--+.++++|.|.+=|    ||...    ++   -+.|+.|++.|++|+     .+.+.++.-+-  |.-.+-..
T Consensus        12 ~~~~~~IAk~~~~aGtD~ilvGGs~Gi~e~----~l---d~~v~~ik~~~~~p~iLFPG~~~~Ls~~ADAvlFmSlLNS~   84 (212)
T TIGR01769        12 SDELKKIAKNAKEAGTDAILVGGSLGISED----KL---DQVVKKIKEITNLPVILFPGSVNLLSRKADAVLFMSLLNSA   84 (212)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCHH----HH---HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             456999999998528988983663373354----78---89999864015786688278845788886598888865369


Q ss_pred             CCCEEEEECCCCCC--------HHH--HHHHHHHCCCEEEEE------EECCCCHHHHHHHHHHCCEEEEEEE--ECCC-
Q ss_conf             76079997066421--------589--998677649825998------5233344789988620140289983--0677-
Q gi|254780975|r   85 GCDIITFHPESSPH--------IRR--SLRTIHAMGKKTGVA------INPETPVAILEDVIDEIDMILIMTV--NPGF-  145 (224)
Q Consensus        85 g~d~i~~H~E~~~~--------~~~--~i~~i~~~g~k~Gia------i~p~T~~~~i~~~l~~~D~vliM~V--~PG~-  145 (224)
                      ..-+|.-|.=...-        +|.  +-..|-+.|.|+-.+      .=|.+..+.-.-|.=-..|+=+=.|  |.|- 
T Consensus        85 d~yfivGaqi~aA~~i~~~~PrlE~Ip~AY~iv~~G~ktavG~vG~~~~Ip~~~~~~A~~Y~LAA~Y~G~~~vYLEAGSG  164 (212)
T TIGR01769        85 DTYFIVGAQIKAAVLIKKLQPRLEVIPTAYLIVGPGGKTAVGYVGKARLIPYDKPEIAAAYALAAKYLGFKLVYLEAGSG  164 (212)
T ss_pred             CCCEEECCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             97367415157899998727885636522688758874044652001258998666899999999874135121310578


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEEC
Q ss_conf             6533220135778998654313865269815899-889999996799899974
Q gi|254780975|r  146 GGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVG  197 (224)
Q Consensus       146 ~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~G  197 (224)
                      .-||-.|+++.-+|.   ..+  ++.+-|=|||+ .|++.++..+|||++|-|
T Consensus       165 As~Pv~~e~i~~~k~---~~~--~I~LIVGGGIr~~EiA~~~v~aGAd~IVTG  212 (212)
T TIGR01769       165 ASEPVSPETISLVKK---KIS--SIPLIVGGGIRSPEIALKIVLAGADVIVTG  212 (212)
T ss_pred             CCCCCCHHHHHHHHH---HCC--CCCEEECCCCCCHHHHHHHHHHCCCEEECC
T ss_conf             666786679999998---548--972775277588899999997089826349


No 279
>PRK04326 methionine synthase; Provisional
Probab=92.00  E-value=1.1  Score=24.78  Aligned_cols=90  Identities=19%  Similarity=0.249  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHH-------HHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf             999999999965998999973426345843417899-------9986412564168567885120336764047760799
Q gi|254780975|r   18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADV-------IRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIIT   90 (224)
Q Consensus        18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~-------i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~   90 (224)
                      -+.++++.+.++|+++||+|=      |.++-.++.       ++..-+-.+..+-+|+.--|-....+.+.+..+|.+.
T Consensus       162 a~~~Ei~~L~~aG~~~IQiDe------P~l~~~~~~~~~~~ea~n~~~~~~~~~i~~HiC~Gny~~i~~~l~~~~vd~~~  235 (330)
T PRK04326        162 VINKEIKNLVEAGARYIQIDE------PALHTHPEEVEIAKEALNIIVKGIDVKLGLHVCYGDYSRLAPYILEFPVDQFD  235 (330)
T ss_pred             HHHHHHHHHHHCCCCEEEECC------CCHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEE
T ss_conf             999999999987998999658------52003988999999999997278997799995477668899999709988886


Q ss_pred             EECCCCCCHHHHHHHHHHC--CCEEEE
Q ss_conf             9706642158999867764--982599
Q gi|254780975|r   91 FHPESSPHIRRSLRTIHAM--GKKTGV  115 (224)
Q Consensus        91 ~H~E~~~~~~~~i~~i~~~--g~k~Gi  115 (224)
                      +-+-+..  ...++.+++.  +.++++
T Consensus       236 lE~~~~~--~~~l~~l~~~~~~k~v~~  260 (330)
T PRK04326        236 LEFKNYN--FKLLDLLKEYGFEKELGV  260 (330)
T ss_pred             HHHHCCC--CHHHHHHHHCCCCCEEEE
T ss_conf             7540798--366688884699984887


No 280
>PRK06267 hypothetical protein; Provisional
Probab=91.76  E-value=1.1  Score=24.62  Aligned_cols=192  Identities=19%  Similarity=0.200  Sum_probs=110.8

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf             70632588999999999996599899997342634584341--7899998641256416856788512033676404776
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC   86 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~   86 (224)
                      |+-.-...-.+.+..+...+.|...+=+  --|.-   ++-  =.++++.|++.++..+.+-+=..+-+. ...+..+|+
T Consensus        58 p~ryR~s~EeIl~~A~~~~~~G~kt~vL--qsGed---yt~eel~~ii~~IK~i~~~avtLSlG~~s~e~-~~~~~~aG~  131 (324)
T PRK06267         58 PLKARRRPESILAEAIIMKRIGWKLEFI--SGGYG---YTTEEINDIIEMISYIQGSKQYLNVGIIDFEN-LNLNEIEGV  131 (324)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCEEEE--ECCCC---CCHHHHHHHHHHHHHHCCCCEEEECCCCCHHH-HHHHHHCCH
T ss_conf             6655289999999999999839997998--04877---99899999999998601871697158787999-977766370


Q ss_pred             CEEEEECCCCC--------------CHHHHHHHHHHCCCEEEE--EEECCCCHHHHHHHHH-----HCCEEEEEEEEC--
Q ss_conf             07999706642--------------158999867764982599--8523334478998862-----014028998306--
Q gi|254780975|r   87 DIITFHPESSP--------------HIRRSLRTIHAMGKKTGV--AINPETPVAILEDVID-----EIDMILIMTVNP--  143 (224)
Q Consensus        87 d~i~~H~E~~~--------------~~~~~i~~i~~~g~k~Gi--ai~p~T~~~~i~~~l~-----~~D~vliM~V~P--  143 (224)
                      +.-   .|+.+              +-.+++..+++.|.++|-  -+..+...+.+...+.     .+|.|-++.-+|  
T Consensus       132 ~~~---lETan~~ly~~i~p~~s~e~Ri~~l~~lk~~G~e~gsG~ivGlGET~ed~~~~~~~lkel~~d~I~I~~f~P~~  208 (324)
T PRK06267        132 VGA---VETVNPKLHEELCPGKPLDKIKEMLKKAKDLGLKTGITIILGLGETEDDIELLLNLIEELNLDRITFYSLNPQK  208 (324)
T ss_pred             HHH---HHCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             142---41479888702799998899999999999839832004687379889999999999997699976325845899


Q ss_pred             C--CCCCCCC--CHHHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHHCCCCEEEECHH--HHCCCCHHHHHHHHHH
Q ss_conf             7--7653322--01357789986543138652--6981589988999999679989997426--6378998999999999
Q gi|254780975|r  144 G--FGGQQLI--ESTIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSLVQAGADLLVVGSS--FFNQKGEISYAKRLND  215 (224)
Q Consensus       144 G--~~Gq~f~--~~~l~kI~~l~~~~~~~~~~--I~vDGGvn~~~i~~l~~~Gad~~V~Gsa--if~~~d~~~~~~~l~~  215 (224)
                      |  |.+++-.  ...+.-|.-+|=++|+-.+.  .++|   +.+|+..+..||||.+.-=-.  .|+.+    +++++.+
T Consensus       209 gTP~en~p~~t~~e~lk~iA~~RL~~Pki~I~~~t~~~---~~~ni~~ll~aGan~itkfp~~~~~~~~----~~~~~e~  281 (324)
T PRK06267        209 ETIFEGKPSPTTLEYMNWVSSVRLNFPKIKIITGTWVD---KLTNIGPLVMAGSNVITKFPLFSMYGKK----EGKTVEN  281 (324)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCHHHHCCCCCCCCCHHHHHHCHH----HHHHHHH
T ss_conf             99889999989999999999999968871253576535---7110018776477630104108863628----7777999


Q ss_pred             H
Q ss_conf             9
Q gi|254780975|r  216 L  216 (224)
Q Consensus       216 l  216 (224)
                      -
T Consensus       282 ~  282 (324)
T PRK06267        282 E  282 (324)
T ss_pred             H
T ss_conf             9


No 281
>pfam01717 Meth_synt_2 Cobalamin-independent synthase, Catalytic domain. This is a family of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, EC:2.1.1.14 from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length. This domain contains the catalytic residues of the enzyme.
Probab=91.71  E-value=1.1  Score=24.58  Aligned_cols=137  Identities=21%  Similarity=0.345  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCEECCCCCCC-------HH-----HHHH--HH---HCCCCEEEEEEEEEECCHHHHHH
Q ss_conf             99999999965998999973426345843417-------89-----9998--64---12564168567885120336764
Q gi|254780975|r   19 LGEEISNITKAGAKQIHFDVMDGCFVPNISFG-------AD-----VIRS--LR---SYSDSVFDCHLMISSIDSHINII   81 (224)
Q Consensus        19 l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~-------~~-----~i~~--i~---~~t~~~~dvHLMv~~P~~~i~~~   81 (224)
                      +.++++.+.++|+.+||+|=      |.++.+       +.     .+..  +.   .-.+..+-+|+.--|-...++.+
T Consensus       156 ~~~ei~~l~~aG~~~iQiDe------P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~H~C~gny~~i~~~l  229 (324)
T pfam01717       156 LRDEVKDLEAAGILVIQIDE------PALREGLPLKKLDWAAYLDWAVAAFRLDTIVAALDTQVHTHVCYSDFNDILDAI  229 (324)
T ss_pred             HHHHHHHHHHCCCCEEEECC------HHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf             99999999987998899757------788636644334989999999999998716789998899996688849999999


Q ss_pred             CCCCCCEEEEECCCCCC-HHHHHHHHHHCCCEEEEEE-ECCCC----HHHHHH-HHHHCCEE--EEEEEEC--CCCCCCC
Q ss_conf             04776079997066421-5899986776498259985-23334----478998-86201402--8998306--7765332
Q gi|254780975|r   82 ADAGCDIITFHPESSPH-IRRSLRTIHAMGKKTGVAI-NPETP----VAILED-VIDEIDMI--LIMTVNP--GFGGQQL  150 (224)
Q Consensus        82 ~~~g~d~i~~H~E~~~~-~~~~i~~i~~~g~k~Giai-~p~T~----~~~i~~-~l~~~D~v--liM~V~P--G~~Gq~f  150 (224)
                      .+..+|.+.+-+..... -.+.+..+. .+..+++.+ +..++    .+.+.. +..-.++|  -=+++.|  ||+.-+ 
T Consensus       230 ~~~~vd~~~lE~~~~~~~~~~~l~~~~-~~k~v~lGvVd~k~~~lE~~e~v~~rI~~aa~~v~~erL~~spdCGf~~l~-  307 (324)
T pfam01717       230 DALDVDVLTIEFARSDMENLEALEEWG-YGKGVGFGVVDIHSPRVPSVEEIKALIKKALDIVPADRLWVNPDCGLKTRP-  307 (324)
T ss_pred             HHCCCCEEEEECCCCCCHHHHHHHHCC-CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCC-
T ss_conf             748988898111689811458888479-998499888817899989999999999999984898889987888988498-


Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             2013577899865
Q gi|254780975|r  151 IESTIPKIRQAKA  163 (224)
Q Consensus       151 ~~~~l~kI~~l~~  163 (224)
                      .+....|++-+.+
T Consensus       308 ~e~a~~KL~~~ve  320 (324)
T pfam01717       308 WEEARAALRNMVD  320 (324)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             8999999999999


No 282
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.56  E-value=1.2  Score=24.48  Aligned_cols=185  Identities=14%  Similarity=0.149  Sum_probs=110.9

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf             70632588999999999996599899997342634584341--7899998641256416856788512033676404776
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC   86 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~   86 (224)
                      |+.=+.|+..++.-++..++.+..-+ +-+.-|.+ ...++  =...++.+.+..+.|+-+||==-.-...+....++|.
T Consensus        21 ~AfNv~n~e~~~Avi~AAee~~sPvI-lq~s~~~~-~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~~~~e~~~~ai~~Gf   98 (284)
T PRK12737         21 PAFNIHNLETLQVVVETAAELRSPVI-LAGTPGTI-SYAGADYIIAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGI   98 (284)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCEE-EECCHHHH-HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99888999999999999999789989-99675388-77799999999999999879999998899999999999998199


Q ss_pred             CEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEE--------E----ECCCCHHHHHHHHHH--CCEEEEEEEE
Q ss_conf             07999706642---1---589998677649825----998--------5----233344789988620--1402899830
Q gi|254780975|r   87 DIITFHPESSP---H---IRRSLRTIHAMGKKT----GVA--------I----NPETPVAILEDVIDE--IDMILIMTVN  142 (224)
Q Consensus        87 d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Gia--------i----~p~T~~~~i~~~l~~--~D~vliM~V~  142 (224)
                      +.|-+-.-+.+   +   -.++.++++..|+-+    |-.        .    ...|.++....++..  +|.   +.|-
T Consensus        99 tSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~---LAva  175 (284)
T PRK12737         99 RSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDS---LAVA  175 (284)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCE---EEEC
T ss_conf             8798709999999999999999998645288699963112576777666641113179999999999969898---7000


Q ss_pred             CCCCCCCCC--C-HHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             677653322--0-135778998654313865269815--8998899999967998999742663
Q gi|254780975|r  143 PGFGGQQLI--E-STIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       143 PG~~Gq~f~--~-~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif  201 (224)
                      .|..-..+-  | =-+++++++++.   .++++-.-|  |+..+.++++.+.|+.-+-.|+.+.
T Consensus       176 iGt~HG~yk~~p~L~~d~L~~I~~~---~~iPLVLHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~  236 (284)
T PRK12737        176 IGTAHGLYKGEPKLDFDRLEEIREK---VSIPLVLHGASGVPDEDVKKAISLGICKVNVATELK  236 (284)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHHCCEEEEEECHHHH
T ss_conf             3753567599985789999999986---399989668999999999999977958998585899


No 283
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=91.49  E-value=0.88  Score=25.30  Aligned_cols=106  Identities=16%  Similarity=0.307  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHH--HHHHCCCCCCEEEEEC
Q ss_conf             89999999999965998999973426345843417899998641256416856788512033--6764047760799970
Q gi|254780975|r   16 FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSH--INIIADAGCDIITFHP   93 (224)
Q Consensus        16 ~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~--i~~~~~~g~d~i~~H~   93 (224)
                      .-.+.+..+++++.|+|.|-+==|=|.-.|.-+.  +.|+.||+..++|+++|-=-..=.--  .-.-+++|+|+|-.-.
T Consensus       153 ~~yyv~~a~~l~~~Gad~I~ikD~aGll~P~~~~--eLV~aLk~~~~lpI~~HtH~t~Gla~an~laAieAGaDivD~a~  230 (463)
T PRK12331        153 IDYFVKLAKEMQEIGADSICIKDMAGILTPYVAY--ELVKCIKENVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAI  230 (463)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH--HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECC
T ss_conf             9999999999996499889986786776889999--99999997449856998368875799999999984999996235


Q ss_pred             CC------CCCHHHHHHHHHHCCCEEEEEEECCCCH
Q ss_conf             66------4215899986776498259985233344
Q gi|254780975|r   94 ES------SPHIRRSLRTIHAMGKKTGVAINPETPV  123 (224)
Q Consensus        94 E~------~~~~~~~i~~i~~~g~k~Giai~p~T~~  123 (224)
                      .+      .+..+.++..++..|..+||-+..-.++
T Consensus       231 ~~~s~gtsqP~~~s~v~~l~~~~~~~~ld~~~l~~i  266 (463)
T PRK12331        231 SPFAGGTSQPATESMVIALQDLGYDTGLDLEELSEI  266 (463)
T ss_pred             CCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             354679789879999999853899999899999999


No 284
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=91.48  E-value=0.66  Score=26.09  Aligned_cols=65  Identities=18%  Similarity=0.308  Sum_probs=51.7

Q ss_pred             CCCCCEEEEECCCCCC-HHHHHHHHHHCCCEEEEE----EECCCCHHHHHHHHHHCCEEEEEE--EECCCCCC
Q ss_conf             4776079997066421-589998677649825998----523334478998862014028998--30677653
Q gi|254780975|r   83 DAGCDIITFHPESSPH-IRRSLRTIHAMGKKTGVA----INPETPVAILEDVIDEIDMILIMT--VNPGFGGQ  148 (224)
Q Consensus        83 ~~g~d~i~~H~E~~~~-~~~~i~~i~~~g~k~Gia----i~p~T~~~~i~~~l~~~D~vliM~--V~PG~~Gq  148 (224)
                      .-.++++.+-+-++.. ..+.+...|+.|.|+|+.    +.|- |.+.+..++..+..|.++-  ..+|.+|.
T Consensus       259 ~eDAe~viV~~GS~~~~~k~AVd~lR~~G~KVGllr~r~~rPF-P~e~l~~~~k~~k~V~Vldr~~s~g~~g~  330 (395)
T PRK08367        259 TEDAEIIFVTMGSLAGTLKEWVDKKREEGYKVGAAKITVYRPF-PVEEIRELAKKAKVLAFLEKNITFGLYGA  330 (395)
T ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCC-CHHHHHHHHCCCCEEEEEECCCCCCCCCC
T ss_conf             9998899998174289999999999974985768998885899-99999998657988999868899888981


No 285
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895   The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor.   Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=91.39  E-value=0.62  Score=26.30  Aligned_cols=142  Identities=15%  Similarity=0.311  Sum_probs=91.0

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCEEC----------CC--CC--CCHHHHHHHHH---CCCCEEEEEEEEEECCHH
Q ss_conf             889999999999965998999973426345----------84--34--17899998641---256416856788512033
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVMDGCFV----------PN--IS--FGADVIRSLRS---YSDSVFDCHLMISSIDSH   77 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fv----------pn--~~--~~~~~i~~i~~---~t~~~~dvHLMv~~P~~~   77 (224)
                      |+.-+ ..+..| ++.+.++|+  -||=-+          .+  +.  .+.+.|++.|+   .++.| .|-=|.+||.-|
T Consensus       147 DLA~v-aHlAtl-earVPF~HF--FDGFRTSHEIQKIE~ldye~~a~lvn~e~v~~fR~r~lnPe~P-~vRGTaQNPDIY  221 (1194)
T TIGR02176       147 DLALV-AHLATL-EARVPFMHF--FDGFRTSHEIQKIEVLDYEDLASLVNDELVKAFRKRSLNPEHP-EVRGTAQNPDIY  221 (1194)
T ss_pred             HHHHH-HHHHHH-HHCCCCCCC--CCCCCCCCHHHHHEECCHHHHHHCCCHHHHHHHHHHCCCCCCC-EEECCCCCCCCC
T ss_conf             78999-999998-616874125--7876322011111022758651016988999997416688877-540346587712


Q ss_pred             ---------------------HHHHCCC--------------CCCEEEEECCCCC-CHHHHHHHHHHCCCEEEEE-EECC
Q ss_conf             ---------------------6764047--------------7607999706642-1589998677649825998-5233
Q gi|254780975|r   78 ---------------------INIIADA--------------GCDIITFHPESSP-HIRRSLRTIHAMGKKTGVA-INPE  120 (224)
Q Consensus        78 ---------------------i~~~~~~--------------g~d~i~~H~E~~~-~~~~~i~~i~~~g~k~Gia-i~p~  120 (224)
                                           .+++.+.              -|+.|+|-.-+.- -+++++++++++|-|+||. .+..
T Consensus       222 FQ~REa~N~YY~a~P~IVq~yM~~~a~lTGR~Y~LfdYYGapdAE~vIi~MGSvaeTieEtvdyL~~kG~KvGllkVrLY  301 (1194)
T TIGR02176       222 FQGREAVNKYYEAVPEIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLRSKGEKVGLLKVRLY  301 (1194)
T ss_pred             CCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEEC
T ss_conf             04541437121013358999998876305765675233787020310440585667899999999728932768887512


Q ss_pred             CCH--HHHHHHHHH-CCEEEEE--EEECCCCCCCCCCHHHHHHHHH
Q ss_conf             344--789988620-1402899--8306776533220135778998
Q gi|254780975|r  121 TPV--AILEDVIDE-IDMILIM--TVNPGFGGQQLIESTIPKIRQA  161 (224)
Q Consensus       121 T~~--~~i~~~l~~-~D~vliM--~V~PG~~Gq~f~~~~l~kI~~l  161 (224)
                      =|+  +.+-..||. +-.|-||  |=+||-.|.|+-.++.+=+-+.
T Consensus       302 RPF~~~~F~~~lP~svK~IAVLDRtKEPGa~GEPLYLDV~~A~~e~  347 (1194)
T TIGR02176       302 RPFSAETFLAALPKSVKRIAVLDRTKEPGAAGEPLYLDVRSAFYEM  347 (1194)
T ss_pred             CCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             7985899998424110122212355688655684488899886304


No 286
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=91.33  E-value=1.3  Score=24.33  Aligned_cols=186  Identities=13%  Similarity=0.194  Sum_probs=110.1

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf             70632588999999999996599899997342634584341--7899998641256416856788512033676404776
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC   86 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~   86 (224)
                      |+.=+.|+..++--++..++.+..-| +-+-.+.. ....+  =...+....+.++.|+-+||==-.....+....++|.
T Consensus        21 ~afNv~n~e~~~avi~AAee~~sPvI-iq~s~~~~-~~~~~~~~~~~~~~~a~~~~VPV~lHLDHg~~~e~i~~ai~~Gf   98 (281)
T PRK06806         21 GAFSVANMEMVMGAIKAAEELSSPLI-LQIAEVRL-NHSPLHMIGPLMVAAAKKATVPVAVHFDHGMTFEKIKEALEIGF   98 (281)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCEE-EECCHHHH-CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99777999999999999999699989-99564333-24609999999999997479988997389899999999998299


Q ss_pred             CEEEEECCCCC---C---HHHHHHHHHHCCCEEEEEE--------------ECCCCHHHHHHHHHH--CCEEEEEEEECC
Q ss_conf             07999706642---1---5899986776498259985--------------233344789988620--140289983067
Q gi|254780975|r   87 DIITFHPESSP---H---IRRSLRTIHAMGKKTGVAI--------------NPETPVAILEDVIDE--IDMILIMTVNPG  144 (224)
Q Consensus        87 d~i~~H~E~~~---~---~~~~i~~i~~~g~k~Giai--------------~p~T~~~~i~~~l~~--~D~vliM~V~PG  144 (224)
                      +.|-+-.-..+   +   -.++.++++..|+-+--=|              ...|+++.-..++..  +|.   +.|-.|
T Consensus        99 sSVM~DgS~l~~eeNi~~Tkevve~Ah~~gv~VEaElG~igg~ed~~~~~~~~~T~peea~~Fv~~TgvD~---LAvaiG  175 (281)
T PRK06806         99 TSVMFDGSHYPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTEEAKRFAEETDVDA---LAVAIG  175 (281)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE---EEEECC
T ss_conf             87996099899999999999999999885986999733337746776666756689899999999859989---987437


Q ss_pred             CCCCCCC---CHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             7653322---0135778998654313865269815--89988999999679989997426637
Q gi|254780975|r  145 FGGQQLI---ESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       145 ~~Gq~f~---~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      ..-..+-   .=-+++++++++..   ++++-.-|  |+..+.++++++.|+.-+-.+|.+..
T Consensus       176 t~HG~yk~~p~L~~d~L~~I~~~~---~iPLVLHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~  235 (281)
T PRK06806        176 NAHGMYNGDPNLRLDRLQEINDNV---HIPLVLHGGSGISPEDFKQCIQHGIRKINVATATFN  235 (281)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHH
T ss_conf             554565899866999999999728---999896499999999999999869838986757899


No 287
>KOG2550 consensus
Probab=91.29  E-value=1.3  Score=24.31  Aligned_cols=121  Identities=14%  Similarity=0.239  Sum_probs=61.6

Q ss_pred             HHHHHCCCCCCEEEEECCCCC--CHHHHHHHHHHCCCEEEE-EEECCCCHHHHHHHHH-HCCEEEEEEEECC--------
Q ss_conf             367640477607999706642--158999867764982599-8523334478998862-0140289983067--------
Q gi|254780975|r   77 HINIIADAGCDIITFHPESSP--HIRRSLRTIHAMGKKTGV-AINPETPVAILEDVID-EIDMILIMTVNPG--------  144 (224)
Q Consensus        77 ~i~~~~~~g~d~i~~H~E~~~--~~~~~i~~i~~~g~k~Gi-ai~p~T~~~~i~~~l~-~~D~vliM~V~PG--------  144 (224)
                      -++.+.++|+|.|++-.-.-+  .-.+.++|||+..-+.-+ +=|--|. +.-++++. -+|.+-+ +.-+|        
T Consensus       255 rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~-~qa~nLI~aGaDgLrV-GMGsGSiCiTqev  332 (503)
T KOG2550         255 RLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTK-EQAANLIAAGADGLRV-GMGSGSICITQKV  332 (503)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCEEEH-HHHHHHHHCCCCEEEE-CCCCCCEEEECEE
T ss_conf             7888663488689996688850457999999986688863431655338-8899998736760575-2556750545301


Q ss_pred             -CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             -76533220135778998654313865269815899-889999996799899974266378
Q gi|254780975|r  145 -FGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQ  203 (224)
Q Consensus       145 -~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~  203 (224)
                       -.|++--..+++ +.+   +-.+.++.+..||||. ...+.+...+||+.+-.||.+-..
T Consensus       333 ma~GrpQ~TAVy~-va~---~A~q~gvpviADGGi~~~Ghi~KAl~lGAstVMmG~lLAgt  389 (503)
T KOG2550         333 MACGRPQGTAVYK-VAE---FANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGT  389 (503)
T ss_pred             EECCCCCCCCHHH-HHH---HHHHCCCCEECCCCCCCCHHHHHHHHCCCHHHHCCCHHCCC
T ss_conf             2326776200326-999---99764996550687587317788875385063104110102


No 288
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=91.28  E-value=1.3  Score=24.30  Aligned_cols=199  Identities=20%  Similarity=0.334  Sum_probs=118.9

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCEEEE-EEECC-EECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCC
Q ss_conf             063258899999999999659989999-73426-3458434178999986412564168567885120336764047760
Q gi|254780975|r   10 SILAADFSRLGEEISNITKAGAKQIHF-DVMDG-CFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCD   87 (224)
Q Consensus        10 Sil~~d~~~l~~~i~~l~~~~~d~iHi-DImDg-~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d   87 (224)
                      +++.++-..|.+...++++-|..-+-+ -=||. -+||---| .+.++++++.+.+.+-+|.=+.+ +.+++++.+.++|
T Consensus        35 ~Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf-~d~lK~lke~~~l~inaHvGfvd-E~~~eklk~~~vd  112 (275)
T COG1856          35 HMIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKF-KDELKALKERTGLLINAHVGFVD-ESDLEKLKEELVD  112 (275)
T ss_pred             HHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHH-HHHHHHHHHHHCEEEEEEEEECC-HHHHHHHHHHCCC
T ss_conf             752532577888999998457605897578687997428999-99999987753748999851001-7889999871686


Q ss_pred             EEEEECCCCC--------------CHHHHHHHHHHCCCEE------EEEEEC-CCCHHHHHHHHH-HCCEEEEEEE--EC
Q ss_conf             7999706642--------------1589998677649825------998523-334478998862-0140289983--06
Q gi|254780975|r   88 IITFHPESSP--------------HIRRSLRTIHAMGKKT------GVAINP-ETPVAILEDVID-EIDMILIMTV--NP  143 (224)
Q Consensus        88 ~i~~H~E~~~--------------~~~~~i~~i~~~g~k~------Giai~p-~T~~~~i~~~l~-~~D~vliM~V--~P  143 (224)
                      .+..-.-..+              +-.+.+..+++.|.++      ||...- .-..+.++=+.+ ..|.+.+-..  .|
T Consensus       113 vvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtp  192 (275)
T COG1856         113 VVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTP  192 (275)
T ss_pred             EEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf             89986127748999997688637777889999997094253059997316852333878899860799739999981388


Q ss_pred             CCCCCCC----CCHHHHHHHHHHHHHHCCCCEE---EEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf             7765332----2013577899865431386526---98158998899999967998999742663789989999999999
Q gi|254780975|r  144 GFGGQQL----IESTIPKIRQAKALIGKRSISL---EVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       144 G~~Gq~f----~~~~l~kI~~l~~~~~~~~~~I---~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l  216 (224)
                      |..=|.-    .+++..-++.+|+.+++ .+.|   .--|-=+.+-=+.++.+|+|.+.     |-.....++++++++.
T Consensus       193 Gtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd~It-----~P~~~t~e~ak~~r~i  266 (275)
T COG1856         193 GTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVDRIT-----FPPRGTIEYAKSIRDI  266 (275)
T ss_pred             CHHCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHCCCCEEE-----CCCCCCEEHHHHHHHH
T ss_conf             5010577976989999999999985899-746741476753678788888871885044-----5985402233342356


No 289
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=91.22  E-value=1.3  Score=24.26  Aligned_cols=61  Identities=23%  Similarity=0.436  Sum_probs=46.9

Q ss_pred             CCCCEEEEECCCCCC-HHHHHHHHHHCCCEEEEE----EECCCCHHHHHHHHHHCCEEEEEEEECCCCCC
Q ss_conf             776079997066421-589998677649825998----52333447899886201402899830677653
Q gi|254780975|r   84 AGCDIITFHPESSPH-IRRSLRTIHAMGKKTGVA----INPETPVAILEDVIDEIDMILIMTVNPGFGGQ  148 (224)
Q Consensus        84 ~g~d~i~~H~E~~~~-~~~~i~~i~~~g~k~Gia----i~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq  148 (224)
                      -.++.+.+-+-++.. ..+.++.+|+.|.|+|+.    +.| -|.+.+.+++..++.|++.=-|   .||
T Consensus       273 edAe~~iV~~GSt~~~~~eAv~~Lr~~G~kvg~l~~~~l~P-fP~~~i~e~l~~~k~v~VvE~N---~Gq  338 (375)
T PRK09627        273 DDAEILIIAYGSVSLSAKEAINRLREEGIKVGLFRPITLWP-SPAKRLKEIGDKFEKILVIELN---MGQ  338 (375)
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECC-CCHHHHHHHHHCCCEEEEEECC---CHH
T ss_conf             99878999956437899999999997499053797524579-9989999999579989998078---159


No 290
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992    This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=91.13  E-value=0.071  Score=32.31  Aligned_cols=145  Identities=19%  Similarity=0.343  Sum_probs=87.7

Q ss_pred             HHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECC--------C-CCCHHHHHHHHHHCCCEE--EEEEECC
Q ss_conf             9999864125641685678851203367640477607999706--------6-421589998677649825--9985233
Q gi|254780975|r   52 DVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPE--------S-SPHIRRSLRTIHAMGKKT--GVAINPE  120 (224)
Q Consensus        52 ~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E--------~-~~~~~~~i~~i~~~g~k~--Giai~p~  120 (224)
                      +-|++||. +-...=|-|==++-.+|-+..+++|+|.+.++--        + ...+.+..++|.++-+=+  |=...-.
T Consensus       124 ~ri~~vr~-aG~i~Av~lsPq~~~~~a~~vv~AG~DLLvIqgT~vSaehv~~e~~E~LnLk~fi~eLDvPVv~Ggv~~Y~  202 (376)
T TIGR01304       124 KRIAEVRD-AGVITAVRLSPQNASKLAPVVVEAGADLLVIQGTVVSAEHVSSESGEPLNLKKFIQELDVPVVAGGVVTYT  202 (376)
T ss_pred             HHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEHHHHHHHEEECCCCCCCHHHHHHHHHCCCCEEECCCCCHH
T ss_conf             99999972-68489998665316788899997173004200123201004688887214888975489887883853088


Q ss_pred             CCHHHHHHHHHHCCEEEEEEEECCCCC-CCCCC------------HHHHHHHH-HHHHHHCCC---CEEEEECCCC-HHH
Q ss_conf             344789988620140289983067765-33220------------13577899-865431386---5269815899-889
Q gi|254780975|r  121 TPVAILEDVIDEIDMILIMTVNPGFGG-QQLIE------------STIPKIRQ-AKALIGKRS---ISLEVDGGVT-SRN  182 (224)
Q Consensus       121 T~~~~i~~~l~~~D~vliM~V~PG~~G-q~f~~------------~~l~kI~~-l~~~~~~~~---~~I~vDGGvn-~~~  182 (224)
                      |.++.-.-   =.--|+     -||+| |.-.-            ..+--+.- -|.++++.+   +++-.||||. .-.
T Consensus       203 ~ALhLMRt---GAagvl-----VGfgG~ga~~T~~~vLG~~VpmATAiAD~AAARrDYLdEtGGRYVHviADG~i~~sGd  274 (376)
T TIGR01304       203 TALHLMRT---GAAGVL-----VGFGGPGAATTTREVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGD  274 (376)
T ss_pred             HHHHHHHH---CCEEEE-----ECCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf             99998630---113788-----6457887342466534210672678999997301133306893377886287055463


Q ss_pred             HHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             99999679989997426637899
Q gi|254780975|r  183 IKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       183 i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      +.+++.||||.+|+||=|-.+.+
T Consensus       275 ~~KAIACGADAV~lGSPLArA~e  297 (376)
T TIGR01304       275 LAKAIACGADAVVLGSPLARAAE  297 (376)
T ss_pred             HHHHEECCCCHHHHCCCHHHHHH
T ss_conf             00100137760200780256630


No 291
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain.  GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out  L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=90.91  E-value=1.4  Score=24.08  Aligned_cols=106  Identities=19%  Similarity=0.295  Sum_probs=66.9

Q ss_pred             CCCHHHHHHHHHHCC--CEEEEEEECCCCHHHHHHHHHH--CCEEEEEEEECCCCC--CCCCCH----HHHHHHHHHHHH
Q ss_conf             421589998677649--8259985233344789988620--140289983067765--332201----357789986543
Q gi|254780975|r   96 SPHIRRSLRTIHAMG--KKTGVAINPETPVAILEDVIDE--IDMILIMTVNPGFGG--QQLIES----TIPKIRQAKALI  165 (224)
Q Consensus        96 ~~~~~~~i~~i~~~g--~k~Giai~p~T~~~~i~~~l~~--~D~vliM~V~PG~~G--q~f~~~----~l~kI~~l~~~~  165 (224)
                      .+++.+.++.+|+.+  +.+|+=+......+++...+..  .|+|.+=+-+=|-+.  +.|...    ...-+..+.+.+
T Consensus       198 ~edl~~~I~~LR~~~~~kpVgvKl~~g~~~~~l~~~~~~~~~DfItIDG~eGGTGAaP~~~~d~~GlP~~~~l~~~~~~L  277 (392)
T cd02808         198 IEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQAL  277 (392)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             99999999999972899807999688898899999999647999996079987541429999749973899999999999


Q ss_pred             HC----CCCEEEEECCCC-HHHHHHHHHCCCCEEEECHH-HH
Q ss_conf             13----865269815899-88999999679989997426-63
Q gi|254780975|r  166 GK----RSISLEVDGGVT-SRNIKSLVQAGADLLVVGSS-FF  201 (224)
Q Consensus       166 ~~----~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsa-if  201 (224)
                      .+    ..+++.++||+. ...+.+....|||.+.+|++ +|
T Consensus       278 ~~~glr~~i~liasGgl~t~~di~kalaLGAD~v~~a~~~m~  319 (392)
T cd02808         278 VKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALI  319 (392)
T ss_pred             HHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHCHHHHH
T ss_conf             976996763799638857478999999867564510569999


No 292
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=90.90  E-value=0.89  Score=25.26  Aligned_cols=63  Identities=19%  Similarity=0.297  Sum_probs=49.9

Q ss_pred             CCCEEEEECCCCCC-HHHHHHHHHHCCCEEEEE----EECCCCHHHHHHHHHHCCEEEEEE--EECCCCCC
Q ss_conf             76079997066421-589998677649825998----523334478998862014028998--30677653
Q gi|254780975|r   85 GCDIITFHPESSPH-IRRSLRTIHAMGKKTGVA----INPETPVAILEDVIDEIDMILIMT--VNPGFGGQ  148 (224)
Q Consensus        85 g~d~i~~H~E~~~~-~~~~i~~i~~~g~k~Gia----i~p~T~~~~i~~~l~~~D~vliM~--V~PG~~Gq  148 (224)
                      .+|++.+-+-++.. ..+.++.+|+.|.|+|+.    ++|- |.+.+.+++..+..|.++=  ..+|..|-
T Consensus       263 dAd~viV~~GS~~~~~~eaVd~lr~~G~kVG~l~vr~~rPF-P~~~l~~~l~~~k~V~Vlern~~~g~~g~  332 (394)
T PRK08366        263 DADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPF-PKEELYEIAESVKGIAVLDRNFSFGQEGI  332 (394)
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCC-CHHHHHHHHCCCCEEEEEECCCCCCCCCC
T ss_conf             87799999375189999999999975986658999884899-99999998757998999657889887881


No 293
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=90.90  E-value=0.76  Score=25.73  Aligned_cols=64  Identities=19%  Similarity=0.336  Sum_probs=51.5

Q ss_pred             CCCCEEEEECCCCC-CHHHHHHHHHHCCCEEEEE----EECCCCHHHHHHHHHHCCEEEEEE--EECCCCCC
Q ss_conf             77607999706642-1589998677649825998----523334478998862014028998--30677653
Q gi|254780975|r   84 AGCDIITFHPESSP-HIRRSLRTIHAMGKKTGVA----INPETPVAILEDVIDEIDMILIMT--VNPGFGGQ  148 (224)
Q Consensus        84 ~g~d~i~~H~E~~~-~~~~~i~~i~~~g~k~Gia----i~p~T~~~~i~~~l~~~D~vliM~--V~PG~~Gq  148 (224)
                      -.++++.+-+-++. ...+.++..|+.|.|+|+.    +.|- |.+.+.+.+..+..|.||-  ..+|..|.
T Consensus       266 eDAe~viV~~GS~~~~~~~AVd~lR~~G~KVGlir~r~~rPF-P~~~l~~al~~~K~V~Vldr~~~~g~~g~  336 (407)
T PRK09622        266 EDAEVAIFALGTTVESAIVAAKEMRKKGIKAGVATIRVLRPF-PYERLGQALKNLKALAILDRSSPAGAMGA  336 (407)
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCC-CHHHHHHHHCCCCEEEEEECCCCCCCCCH
T ss_conf             987799998078689999999999974986758999985899-99999998757998999978899888773


No 294
>PRK01362 putative translaldolase; Provisional
Probab=90.83  E-value=1.4  Score=24.03  Aligned_cols=155  Identities=11%  Similarity=0.108  Sum_probs=100.9

Q ss_pred             HHHHHHHHHCCCCEEEEEEEEEECCHHHH---HHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHH
Q ss_conf             89999864125641685678851203367---640477607999706642158999867764982599852333447899
Q gi|254780975|r   51 ADVIRSLRSYSDSVFDCHLMISSIDSHIN---IIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILE  127 (224)
Q Consensus        51 ~~~i~~i~~~t~~~~dvHLMv~~P~~~i~---~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~  127 (224)
                      .+.++++++..+.|+.+..+..+++..++   .+.+.+. .+.+-.-.+.+-.+.++.+++.|+++-+..-- |.-..+.
T Consensus        40 ~~~~~~i~~~~~~~is~ev~~~~~~~m~~qA~~l~~~~~-nv~VKIP~t~~Gl~ai~~L~~~Gi~vn~Tai~-s~~Qa~~  117 (214)
T PRK01362         40 KEVIKEICSIVDGPVSAEVIALDAEGMIKEGRELAKIAP-NVVVKIPMTTEGLKAVKALSKEGIKTNVTLCF-SANQALL  117 (214)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCC-CEEEECCCCHHHHHHHHHHHHCCCCEEEEECC-CHHHHHH
T ss_conf             999999987317975799636419999999999998487-76998189666999999999849975766458-8999999


Q ss_pred             HHHHHCCEEEEEEE---ECCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCHHHHHHHHHCCCCEEEECHHH--
Q ss_conf             88620140289983---06776533220135778998654313865--269815899889999996799899974266--
Q gi|254780975|r  128 DVIDEIDMILIMTV---NPGFGGQQLIESTIPKIRQAKALIGKRSI--SLEVDGGVTSRNIKSLVQAGADLLVVGSSF--  200 (224)
Q Consensus       128 ~~l~~~D~vliM~V---~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~--~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai--  200 (224)
                      -...-.+||-.-.-   +-|.       +..+-++++++++.+.++  +|-+-.==|.+++.++..+|+|.+.+.-.+  
T Consensus       118 Aa~aga~yispy~gR~~d~G~-------Dg~~~i~~i~~~~~~~~~~tkIL~AS~r~~~~i~~a~~~G~~~iTvp~~i~~  190 (214)
T PRK01362        118 AAKAGATYVSPFVGRLDDIGT-------DGMELIEDIREIYDNYGFETEIIAASVRHPMHVLEAALIGADIATIPYKVIK  190 (214)
T ss_pred             HHHCCCCEEEEECCHHHHCCC-------CHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEECCHHHHH
T ss_conf             987599689863121865589-------8289999999999963998137520038899999999869999983999999


Q ss_pred             --HCCCCHHHHHHHHH
Q ss_conf             --37899899999999
Q gi|254780975|r  201 --FNQKGEISYAKRLN  214 (224)
Q Consensus       201 --f~~~d~~~~~~~l~  214 (224)
                        |+.+-..+..+.+.
T Consensus       191 ~l~~~plt~~~~~~F~  206 (214)
T PRK01362        191 QLFKHPLTDKGLEKFL  206 (214)
T ss_pred             HHHCCCCHHHHHHHHH
T ss_conf             9976933799999999


No 295
>pfam01120 Alpha_L_fucos Alpha-L-fucosidase.
Probab=90.74  E-value=1.4  Score=23.97  Aligned_cols=117  Identities=15%  Similarity=0.055  Sum_probs=70.3

Q ss_pred             EEECCHHHHHHCCCCCCEEEEECCCC---------------------CC-HHHHHHHHHHCCCEEEEEEECCCCHHHHHH
Q ss_conf             85120336764047760799970664---------------------21-589998677649825998523334478998
Q gi|254780975|r   71 ISSIDSHINIIADAGCDIITFHPESS---------------------PH-IRRSLRTIHAMGKKTGVAINPETPVAILED  128 (224)
Q Consensus        71 v~~P~~~i~~~~~~g~d~i~~H~E~~---------------------~~-~~~~i~~i~~~g~k~Giai~p~T~~~~i~~  128 (224)
                      --||+.+++.+.++|+.++++-..+.                     .| +.+....+|++|.++|+-..+-   +...+
T Consensus        91 ~fd~~~Wa~~ak~AGakY~vlTaKHHDGF~lwdS~~t~~n~~~~~~krDiv~el~~A~rk~Glk~G~Y~S~~---DW~~~  167 (344)
T pfam01120        91 KFDADEWAKLAKAAGAKYVVLTTKHHDGFTMWDSKYSDWNSVDTGPKRDIVGELAKACRKNGIKFGFYYSLL---DWHHP  167 (344)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECHH---HHCCC
T ss_conf             079999999999859965886134157752577889998776789997769999999998598679972315---42686


Q ss_pred             HHHHCCEEEEEEEECCCCCCC----CCCHHHHHHHHHHHHHHCCCCE-EEEECCCCH--------HHHHHHHHCCCCEEE
Q ss_conf             862014028998306776533----2201357789986543138652-698158998--------899999967998999
Q gi|254780975|r  129 VIDEIDMILIMTVNPGFGGQQ----LIESTIPKIRQAKALIGKRSIS-LEVDGGVTS--------RNIKSLVQAGADLLV  195 (224)
Q Consensus       129 ~l~~~D~vliM~V~PG~~Gq~----f~~~~l~kI~~l~~~~~~~~~~-I~vDGGvn~--------~~i~~l~~~Gad~~V  195 (224)
                      .-.. +.      ..-..+..    +.+..+   .++++|..++.++ ++-|||...        +....+.+...+++|
T Consensus       168 ~~~~-~~------~~~~~~~~~~~~~~~~~~---~Ql~EL~~~Y~~d~lWfDg~~~~~~~~~~~~~~~~~~~~~qP~~vi  237 (344)
T pfam01120       168 DYKV-DK------EGQEDKGLWNKYVKEFTF---NQLKELVTNYKPDILWFDGDWDNPSEYWDSAEFYALLYKLQPGVVV  237 (344)
T ss_pred             CCCC-CC------CCCCCCCCHHHHHHHHHH---HHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf             6676-65------576554106899999999---9999999648977799818988861203799999999852998699


Q ss_pred             ECHHH
Q ss_conf             74266
Q gi|254780975|r  196 VGSSF  200 (224)
Q Consensus       196 ~Gsai  200 (224)
                      .+.-.
T Consensus       238 n~R~~  242 (344)
T pfam01120       238 NDRWG  242 (344)
T ss_pred             ECCCC
T ss_conf             67756


No 296
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain.  MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=90.69  E-value=1.4  Score=23.95  Aligned_cols=113  Identities=14%  Similarity=0.188  Sum_probs=61.2

Q ss_pred             HHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf             998677649825998523334478998862-0140289983067765332201357789986543138652698158998
Q gi|254780975|r  102 SLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS  180 (224)
Q Consensus       102 ~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~  180 (224)
                      .++|+|+.=..+ +.+.-=...+.-..-.+ -+|-|.| | |=|--...--+.+++-+-++++..   +.++.+||||+.
T Consensus       227 di~wlr~~w~~p-lilKGI~~~eDA~~A~~~G~dgIiV-S-NHGGRQLD~a~~~id~Lp~I~~av---~~~V~~DgGIRr  300 (361)
T cd04736         227 DLRWLRDLWPHK-LLVKGIVTAEDAKRCIELGADGVIL-S-NHGGRQLDDAIAPIEALAEIVAAT---YKPVLIDSGIRR  300 (361)
T ss_pred             HHHHHHHHCCCC-EEEECCCCHHHHHHHHHCCCCEEEE-C-CCCCCCCCCCCCHHHHHHHHHHHH---CCEEEEECCCCC
T ss_conf             999999866997-4552148999999998769999997-5-886333577741477799999971---994999489887


Q ss_pred             -HHHHHHHHCCCCEEEECH-HHHCC-CCHHHHHHHHHHHHHHH
Q ss_conf             -899999967998999742-66378-99899999999999978
Q gi|254780975|r  181 -RNIKSLVQAGADLLVVGS-SFFNQ-KGEISYAKRLNDLKKSA  220 (224)
Q Consensus       181 -~~i~~l~~~Gad~~V~Gs-aif~~-~d~~~~~~~l~~l~~~a  220 (224)
                       ..+-+....||+.+-+|. ++|.- -...+-.++..++.+.+
T Consensus       301 G~DV~KALALGA~aV~iGRp~lygLaa~G~~GV~~~l~iL~~E  343 (361)
T cd04736         301 GSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEE  343 (361)
T ss_pred             HHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             8999999977999898778999987711099999999999999


No 297
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=90.63  E-value=1.5  Score=23.91  Aligned_cols=159  Identities=10%  Similarity=0.116  Sum_probs=101.0

Q ss_pred             HHHHHHHHHCCCCEEEEEEEEEECCHHHHH---HCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHH
Q ss_conf             899998641256416856788512033676---40477607999706642158999867764982599852333447899
Q gi|254780975|r   51 ADVIRSLRSYSDSVFDCHLMISSIDSHINI---IADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILE  127 (224)
Q Consensus        51 ~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~---~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~  127 (224)
                      .+.++++++..+.|+.+....++++..+++   +.+.+ +.+.+-.-.+..-.+.++.+++.|+++-+..-- |.-..+.
T Consensus        40 ~~~~~~i~~~~~~~ls~qv~~~~~~~m~~~a~~l~~~~-~ni~vKIP~t~~gl~ai~~L~~~gi~~n~Tav~-s~~Qa~~  117 (211)
T cd00956          40 EAVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLASLG-GNVVVKIPVTEDGLKAIKKLSEEGIKTNVTAIF-SAAQALL  117 (211)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHH
T ss_conf             99999999854998899997387999999999999738-957999268565999999999859976777506-8999999


Q ss_pred             HHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCHHHHHHHHHCCCCEEEECHHH----H
Q ss_conf             8862014028998306776533220135778998654313865--269815899889999996799899974266----3
Q gi|254780975|r  128 DVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSI--SLEVDGGVTSRNIKSLVQAGADLLVVGSSF----F  201 (224)
Q Consensus       128 ~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~--~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai----f  201 (224)
                      --..-.++|-...-.-.-.|.    +..+-++++++++.++++  +|-+-.==|.+++.++..+|+|.+.+.-.+    |
T Consensus       118 Aa~aga~yvspf~GRi~d~G~----d~~~~i~~~~~~~~~~~~~tkiL~AS~R~~~~v~~a~~~G~d~iTip~~vl~~l~  193 (211)
T cd00956         118 AAKAGATYVSPFVGRIDDLGG----DGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQLL  193 (211)
T ss_pred             HHHCCCCEEEEECCCHHHCCC----CHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCEEECCHHHHHHHH
T ss_conf             998799788630340754589----8599999999999982998268852048899999999869999984999999997


Q ss_pred             CCCCHHHHHHHHHH
Q ss_conf             78998999999999
Q gi|254780975|r  202 NQKGEISYAKRLND  215 (224)
Q Consensus       202 ~~~d~~~~~~~l~~  215 (224)
                      +.+...+..+.+.+
T Consensus       194 ~~~~T~~~v~~F~~  207 (211)
T cd00956         194 KHPLTDKGVEKFLE  207 (211)
T ss_pred             CCCCHHHHHHHHHH
T ss_conf             69038999999999


No 298
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=90.02  E-value=1.6  Score=23.59  Aligned_cols=180  Identities=11%  Similarity=0.163  Sum_probs=109.7

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC----HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             706325889999999999965998999973426345843417----8999986412564168567885120336764047
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG----ADVIRSLRSYSDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~----~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      |+.=+.|+..++--++..++.+..-+ +-+..|.+ .  .+|    ...++.+.+..+.|+-+||==-+....+....++
T Consensus        21 ~AfNv~n~e~~~Avi~AAee~~sPvI-lq~s~~~~-~--~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~e~i~~ai~~   96 (286)
T PRK12738         21 PAFNIHNAETIQAILEVCSEMRSPVI-LAGTPGTF-K--HIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHA   96 (286)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCEE-EECCHHHH-H--HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHC
T ss_conf             99888999999999999999789989-99375377-6--66999999999999998799999989999999999999977


Q ss_pred             CCCEEEEECCCC---CC---HHHHHHHHHHCCCEE----E--------EEEE----CCCCHHHHHHHHHH--CCEEEEEE
Q ss_conf             760799970664---21---589998677649825----9--------9852----33344789988620--14028998
Q gi|254780975|r   85 GCDIITFHPESS---PH---IRRSLRTIHAMGKKT----G--------VAIN----PETPVAILEDVIDE--IDMILIMT  140 (224)
Q Consensus        85 g~d~i~~H~E~~---~~---~~~~i~~i~~~g~k~----G--------iai~----p~T~~~~i~~~l~~--~D~vliM~  140 (224)
                      |.+.|-+-.-..   ++   -.++.++++..|+-+    |        +...    ..|.++....+.+.  +|.   +.
T Consensus        97 GftSVM~DgS~lp~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~---LA  173 (286)
T PRK12738         97 GVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDS---LA  173 (286)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE---EH
T ss_conf             998798738999999999999999999847399788864134665777666652235799999999999879781---22


Q ss_pred             EECCC-----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf             30677-----6533220135778998654313865269815--899889999996799899974266
Q gi|254780975|r  141 VNPGF-----GGQQLIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSF  200 (224)
Q Consensus       141 V~PG~-----~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsai  200 (224)
                      |-.|.     .+.+-  =-+++++++++.   .++++-.-|  |+..+.++++++.|+.-+-.++.+
T Consensus       174 vaiGn~HG~y~~~p~--l~~~~L~~I~~~---~~iPLVLHGgSG~~~e~i~~ai~~Gi~KvNi~T~l  235 (286)
T PRK12738        174 VAIGTAHGLYSKTPK--IDFQRLAEIREV---VDVPLVLHGASDVPDEFVRRTIELGVTKVNVATEL  235 (286)
T ss_pred             HHHCCCCCCCCCCCC--CCHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHCCEEEEEECHHH
T ss_conf             332354677799994--789999999730---79998976999999999999997690699848589


No 299
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=89.50  E-value=1.8  Score=23.34  Aligned_cols=173  Identities=17%  Similarity=0.206  Sum_probs=106.9

Q ss_pred             HHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH--CC----------------CCEE-EE-EEEEEECCHHHHH
Q ss_conf             999999965998999973426345843417899998641--25----------------6416-85-6788512033676
Q gi|254780975|r   21 EEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS--YS----------------DSVF-DC-HLMISSIDSHINI   80 (224)
Q Consensus        21 ~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~--~t----------------~~~~-dv-HLMv~~P~~~i~~   80 (224)
                      ...++.+++|+..   =.|--+    ++-+|.+.+.+.+  +.                .+|+ .+ | .|+-|...++.
T Consensus        44 ~l~~~A~~~gi~L---y~MtKQ----~GRNP~l~~~l~~~G~~g~VaVD~kEA~~l~~~gl~vghvGH-LVQiP~~~v~~  115 (382)
T cd06811          44 LLAETAEKYGIEL---YFMTKQ----FGRNPFLARALLEAGIPGAVAVDFKEARALHEAGLPLGHVGH-LVQIPRHQVPA  115 (382)
T ss_pred             HHHHHHHHCCCEE---EEEEEC----CCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHH
T ss_conf             9999999739689---999610----589989999999739985689609999999985998344157-13685768999


Q ss_pred             HCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEE---------CC----CCHHHHHHHHH---HCCEEEEEEEE--
Q ss_conf             40477607999706642158999867764982599852---------33----34478998862---01402899830--
Q gi|254780975|r   81 IADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAIN---------PE----TPVAILEDVID---EIDMILIMTVN--  142 (224)
Q Consensus        81 ~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~---------p~----T~~~~i~~~l~---~~D~vliM~V~--  142 (224)
                      ....++++||+-.-  +...++-...++.|..=-|-+.         |+    -+++.+...+.   .++.|-+-+|+  
T Consensus       116 iv~~~PeviTVfS~--ekA~eis~aA~~~g~~Q~illrV~~~~D~~Y~GQegGf~l~eL~~v~~~i~~l~gi~i~GvT~F  193 (382)
T cd06811         116 VLAMRPEVITVYSL--EKAREISDAAVELGRVQDVLLRVYGDEDTLYPGQEGGFPLEELPAVLAAIKALPGIRIAGLTSF  193 (382)
T ss_pred             HHHHCCCEEEEEEH--HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEEECE
T ss_conf             99749978999209--9999999999981973326999964898463775377548999999999972899679664320


Q ss_pred             CCC----CCCCCCC-HHHHHHHHHHHHHHCCCCE---EEEECCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             677----6533220-1357789986543138652---69815899889999996799899974266378
Q gi|254780975|r  143 PGF----GGQQLIE-STIPKIRQAKALIGKRSIS---LEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQ  203 (224)
Q Consensus       143 PG~----~Gq~f~~-~~l~kI~~l~~~~~~~~~~---I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~  203 (224)
                      |-+    ..+...| .-+..+.+.|+++.+.++.   +-.-+.-+..|++.+.+.|+..-=-|-++-+.
T Consensus       194 Pc~L~d~~~~~~~pT~N~~Tl~~A~~~L~~~G~~~~qvN~PSaTs~~tlp~La~~G~Th~EPGHaLTGT  262 (382)
T cd06811         194 PCFLYDEEQGDIAPTPNLFTLLKAKELLEKRGIEILQLNAPSATSCATLPLLAEYGVTHGEPGHALTGT  262 (382)
T ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             068774777951158529999999999997598627950685114765999998488667887412478


No 300
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.    This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=89.41  E-value=1.8  Score=23.29  Aligned_cols=89  Identities=22%  Similarity=0.395  Sum_probs=66.9

Q ss_pred             ECCCCHHHHHHHHHH-CCEEEEEEEECCCC---CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHH--------
Q ss_conf             233344789988620-14028998306776---533220135778998654313865269815899-88999--------
Q gi|254780975|r  118 NPETPVAILEDVIDE-IDMILIMTVNPGFG---GQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIK--------  184 (224)
Q Consensus       118 ~p~T~~~~i~~~l~~-~D~vliM~V~PG~~---Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~--------  184 (224)
                      +.+-|++.=..|-.. .|=+.++=++.--.   +..-.-++++++.+      +--++++|=|||+ .+.+.        
T Consensus        40 daGDPVeLA~~Y~~eGADELVFLDITAS~ecPl~R~~m~~Vv~r~Ae------~VfiPlTVGGGI~~~eD~~GtkiPale  113 (312)
T TIGR00735        40 DAGDPVELAQRYDEEGADELVFLDITASSECPLGRETMIDVVERTAE------KVFIPLTVGGGIKSIEDVKGTKIPALE  113 (312)
T ss_pred             HCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHH------HCCCCEEECCCCCCHHHCCCCCCCHHH
T ss_conf             21782378999876289589851411366678888011678888752------145222216888843204564442789


Q ss_pred             ---HHHHCCCCEEEECHHHHCCCCHHHHHHH
Q ss_conf             ---9996799899974266378998999999
Q gi|254780975|r  185 ---SLVQAGADLLVVGSSFFNQKGEISYAKR  212 (224)
Q Consensus       185 ---~l~~~Gad~~V~Gsaif~~~d~~~~~~~  212 (224)
                         .++.+|||-+-.+|+=.++|+.+..+..
T Consensus       114 vas~~L~aGADKvSiNTaAv~~P~li~e~a~  144 (312)
T TIGR00735       114 VASKLLRAGADKVSINTAAVKNPELISEAAD  144 (312)
T ss_pred             HHHHHHHCCCCEEEECCHHHHCCHHHHHHHH
T ss_conf             9999985489846328467508447899873


No 301
>KOG1606 consensus
Probab=89.29  E-value=1.6  Score=23.71  Aligned_cols=42  Identities=29%  Similarity=0.480  Sum_probs=35.3

Q ss_pred             EECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf             81589-9889999996799899974266378998999999999
Q gi|254780975|r  174 VDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND  215 (224)
Q Consensus       174 vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~  215 (224)
                      .-||| +.-....+-+.|.|-+-+||.||++.||...++.+.+
T Consensus       214 AaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVq  256 (296)
T KOG1606         214 AAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQ  256 (296)
T ss_pred             CCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             2567588167999998089848865542368988999999999


No 302
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276   This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=89.18  E-value=1.3  Score=24.15  Aligned_cols=123  Identities=24%  Similarity=0.368  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEE-----------CCEECCCCCCCHHHHHHHHHC-----CCCEEEEEEEEEECCHHHHH
Q ss_conf             99999999999659989999734-----------263458434178999986412-----56416856788512033676
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVM-----------DGCFVPNISFGADVIRSLRSY-----SDSVFDCHLMISSIDSHINI   80 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDIm-----------Dg~fvpn~~~~~~~i~~i~~~-----t~~~~dvHLMv~~P~~~i~~   80 (224)
                      +-|.+|+.-|+++||.-||||=-           |=| -.=+.|   -|..+|=-     .+.-|+.||.-.+-...|+.
T Consensus       602 LAlrdEV~DLE~AGI~iIQiDEPALREgLPLR~~d~h-~~YL~W---AV~aFrla~sgV~~~TQIHTHMCYSeFn~II~~  677 (778)
T TIGR01371       602 LALRDEVLDLEEAGIKIIQIDEPALREGLPLRKSDWH-SEYLDW---AVEAFRLATSGVKDETQIHTHMCYSEFNDIIEA  677 (778)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCCCCC-HHHHHH---HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             9999999999876981798540785078887743110-445789---999877752488888663443333774379998


Q ss_pred             HCCCCCCEEEEECCCCCCHHHHHHHHHH---CCCEEEEEE----ECCCC-HHHHHHHH----HHCCEEEEEEEECCCC
Q ss_conf             4047760799970664215899986776---498259985----23334-47899886----2014028998306776
Q gi|254780975|r   81 IADAGCDIITFHPESSPHIRRSLRTIHA---MGKKTGVAI----NPETP-VAILEDVI----DEIDMILIMTVNPGFG  146 (224)
Q Consensus        81 ~~~~g~d~i~~H~E~~~~~~~~i~~i~~---~g~k~Giai----~p~T~-~~~i~~~l----~~~D~vliM~V~PG~~  146 (224)
                      +...-||.|+|  |+...=.+.|...++   +...+|+.+    .|--| .+++...|    ..++.=++ =|||-||
T Consensus       678 I~~LDADVIsI--E~SRS~~~lL~~f~~~~~Y~~giGpGVYDIHSPRvPS~eE~~~~~~~aL~~~p~~~l-WVNPDCG  752 (778)
T TIGR01371       678 IAALDADVISI--EASRSDMELLDAFKNIFGYPNGIGPGVYDIHSPRVPSVEEMADLIEKALQVLPAERL-WVNPDCG  752 (778)
T ss_pred             HHHCCCCCEEH--HHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCHHHC-EECCCCC
T ss_conf             84325871003--110475579999852036432348721322688867389999999999974005508-0578887


No 303
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=89.08  E-value=1.9  Score=23.14  Aligned_cols=123  Identities=18%  Similarity=0.273  Sum_probs=75.2

Q ss_pred             HCCCCCCEEEEECCCC--------------------------CCHHHHHHHHHHC-CCEEEEEEECCC------CHHHH-
Q ss_conf             4047760799970664--------------------------2158999867764-982599852333------44789-
Q gi|254780975|r   81 IADAGCDIITFHPESS--------------------------PHIRRSLRTIHAM-GKKTGVAINPET------PVAIL-  126 (224)
Q Consensus        81 ~~~~g~d~i~~H~E~~--------------------------~~~~~~i~~i~~~-g~k~Giai~p~T------~~~~i-  126 (224)
                      ..++|.|-|-+|.-+.                          .-+.++++.+|+. +..+++-++++.      .++.. 
T Consensus       151 A~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~YGGs~eNR~Rf~lEii~aVr~~~~~~v~vRis~~d~~~gG~~~~d~~  230 (337)
T PRK13523        151 AKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPDGLTVQDYV  230 (337)
T ss_pred             HHHCCCCEEEEECCCCHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHH
T ss_conf             99849998998135435899847923248958558888999889999999999865886399933655578998989999


Q ss_pred             --HHHHHH--CCEEEEEEE--ECCCCCCCCCC-HHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCC-CCEEEEC
Q ss_conf             --988620--140289983--06776533220-135778998654313865269815899-88999999679-9899974
Q gi|254780975|r  127 --EDVIDE--IDMILIMTV--NPGFGGQQLIE-STIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAG-ADLLVVG  197 (224)
Q Consensus       127 --~~~l~~--~D~vliM~V--~PG~~Gq~f~~-~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~G-ad~~V~G  197 (224)
                        .+.+..  +|++.+-+-  .|.  .-...+ ..+.-.+.+|   ...++.+.+-|+++ .+.+.++++.| +|.+..|
T Consensus       231 ~~~~~l~~~GvD~i~vs~G~~~~~--~~~~~~g~~~~~a~~ik---~~~~ipvi~vG~i~~~~~ae~~l~~G~aD~V~~g  305 (337)
T PRK13523        231 QYAKWMKEQGVDLIDVSSGAVVPA--RIDVYPGYQVPFAEHIK---EHANIATGAVGLITTGAQAEEILNNNRADLIFIG  305 (337)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCC--CCCCCCCCCHHHHHHHH---HHCCCCEEEECCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf             999999974999899578855477--67778753348999999---8769709998386999999999987994799989


Q ss_pred             HHHHCCCCHHH
Q ss_conf             26637899899
Q gi|254780975|r  198 SSFFNQKGEIS  208 (224)
Q Consensus       198 saif~~~d~~~  208 (224)
                      .++.-+||...
T Consensus       306 R~~iadPd~p~  316 (337)
T PRK13523        306 RELLRNPYFPR  316 (337)
T ss_pred             HHHHHCCCHHH
T ss_conf             99998910999


No 304
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=88.64  E-value=2.1  Score=22.95  Aligned_cols=121  Identities=19%  Similarity=0.317  Sum_probs=75.2

Q ss_pred             CCCCCCEEEEECCC-----------C---------------CCHHHHHHHHHHC-CC-EEEEEEECCC----------CH
Q ss_conf             04776079997066-----------4---------------2158999867764-98-2599852333----------44
Q gi|254780975|r   82 ADAGCDIITFHPES-----------S---------------PHIRRSLRTIHAM-GK-KTGVAINPET----------PV  123 (224)
Q Consensus        82 ~~~g~d~i~~H~E~-----------~---------------~~~~~~i~~i~~~-g~-k~Giai~p~T----------~~  123 (224)
                      .++|.|-|-+|.-+           +               .-+.+++..+|+. |. .+|+-++|..          ..
T Consensus       169 ~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSleNR~Rf~~Eii~aVr~avg~d~v~vRis~~~~~~~~~~g~~~~  248 (362)
T PRK10605        169 REAGFDLVELHSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEE  248 (362)
T ss_pred             HHCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHH
T ss_conf             98399989970247369997389766789887899789998899999999999739873799972665656665788768


Q ss_pred             HHHHHHHHH-----CCEEEEEEEECCCCC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCC-CCEEEE
Q ss_conf             789988620-----140289983067765-3322013577899865431386526981589988999999679-989997
Q gi|254780975|r  124 AILEDVIDE-----IDMILIMTVNPGFGG-QQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAG-ADLLVV  196 (224)
Q Consensus       124 ~~i~~~l~~-----~D~vliM~V~PG~~G-q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~G-ad~~V~  196 (224)
                      +....+++.     +|++.+-  .|.+.| .++....-.+   +|+   ..+..+..-|+++.+.+.++++.| +|.+-.
T Consensus       249 ~~~~~~~~~l~~~gv~~l~~s--~p~~~~~~~~~~~~~~~---ik~---~v~~PVi~~G~~tpe~Ae~~l~~G~aDlV~~  320 (362)
T PRK10605        249 ADALYLIEQLGKRGIAYLHMS--EPDWAGGEPYSDAFREK---VRA---RFHGPIIGAGAYTAEKAETLIGKGLIDAVAF  320 (362)
T ss_pred             HHHHHHHHHHHHCCCEEEEEC--CCCCCCCCCCCHHHHHH---HHH---HCCCCEEECCCCCHHHHHHHHHCCCCCEEEE
T ss_conf             999999999986297499972--68556898751999999---998---7699789768999999999998899879810


Q ss_pred             CHHHHCCCCHHHHH
Q ss_conf             42663789989999
Q gi|254780975|r  197 GSSFFNQKGEISYA  210 (224)
Q Consensus       197 Gsaif~~~d~~~~~  210 (224)
                      |.+++-+||....+
T Consensus       321 gR~llADPd~~~K~  334 (362)
T PRK10605        321 GRDYIANPDLVARL  334 (362)
T ss_pred             HHHHHHCCCHHHHH
T ss_conf             06877594589998


No 305
>PRK02227 hypothetical protein; Provisional
Probab=88.62  E-value=2.1  Score=22.94  Aligned_cols=180  Identities=17%  Similarity=0.169  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCEECCCC-CC---CHHHHHHHHHCC--CCEEEEEEE--EEECCH---HHHHHCCCCC
Q ss_conf             999999999965998999973426345843-41---789999864125--641685678--851203---3676404776
Q gi|254780975|r   18 RLGEEISNITKAGAKQIHFDVMDGCFVPNI-SF---GADVIRSLRSYS--DSVFDCHLM--ISSIDS---HINIIADAGC   86 (224)
Q Consensus        18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~-~~---~~~~i~~i~~~t--~~~~dvHLM--v~~P~~---~i~~~~~~g~   86 (224)
                      ++++.. ...++|+|.+  |+-+    |+- ++   +|+.+++|+...  +.|+..-+=  -.+|..   -+......|+
T Consensus         9 ~~~EA~-~a~~~gaDII--DvKn----P~~GaLGa~~p~~I~~I~~~v~~~~~vSatiGD~p~~~~~i~~a~~~~a~~Gv   81 (239)
T PRK02227          9 NLEEAL-EALEGGADII--DVKN----PKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTAALAALGAAATGV   81 (239)
T ss_pred             CHHHHH-HHHHCCCCEE--EECC----CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf             989999-9985799989--8279----88887889999999999998579971798836978993799999987661399


Q ss_pred             CEEEEECCCCCCHHH-------HHHHHHHC--CCE-EEEEEECC-----CCHHHHHHHHHHCCEEEEEEEECCCCCCC-C
Q ss_conf             079997066421589-------99867764--982-59985233-----34478998862014028998306776533-2
Q gi|254780975|r   87 DIITFHPESSPHIRR-------SLRTIHAM--GKK-TGVAINPE-----TPVAILEDVIDEIDMILIMTVNPGFGGQQ-L  150 (224)
Q Consensus        87 d~i~~H~E~~~~~~~-------~i~~i~~~--g~k-~Giai~p~-----T~~~~i~~~l~~~D~vliM~V~PG~~Gq~-f  150 (224)
                      |||=+=.-...+..+       +...++..  +.+ +.+.+--.     .+...+-+.+....+--+|--+-+..|+. |
T Consensus        82 dyVKvGl~~~~~~~~~~~~l~~v~~a~k~~~~~~~~VaV~yAD~~~~~~~~p~~i~~~a~~~g~~gvMiDT~~Kdg~sL~  161 (239)
T PRK02227         82 DYVKVGLYGTKTAEEAVEVMAAVVRAVKDLDPNKRVVAVLYADAGRDGSISPLDLPAIAAEAGFDGAMLDTAGKDGRSLF  161 (239)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHH
T ss_conf             98999457888679999999999998751167973999998326422478867789999985998999863678887534


Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             201357789986543138652698158998899999967998999742663789
Q gi|254780975|r  151 IESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       151 ~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      .--..+.++++.+.....+..+..-|+++.+.++.+...++|.+=.=|++-...
T Consensus       162 d~~~~~~L~~fv~~a~~~gl~~gLAGSL~~~di~~L~~l~Pd~lG~Rga~C~~g  215 (239)
T PRK02227        162 DHMDEEELAEFVAEARAHGLMTALAGSLKLEDIPALKRLGPDILGVRGAVCTGG  215 (239)
T ss_pred             HCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHCCCC
T ss_conf             238999999999999975993998456887888999756999899656546899


No 306
>TIGR00343 TIGR00343 pyridoxine biosynthesis protein; InterPro: IPR001852   Snz1p is a highly conserved protein involved in growth arrest in S. cerevisiae . Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in C. nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance. ..
Probab=88.41  E-value=1.5  Score=23.76  Aligned_cols=43  Identities=35%  Similarity=0.482  Sum_probs=37.0

Q ss_pred             EECCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf             81589-98899999967998999742663789989999999999
Q gi|254780975|r  174 VDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       174 vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l  216 (224)
                      .-||| +......+...|+|-+-+||.||++.+|...+..+.+-
T Consensus       210 aaGGvatPadaal~mqlG~~GvfvGsGifks~~P~~~a~aiv~a  253 (298)
T TIGR00343       210 AAGGVATPADAALLMQLGADGVFVGSGIFKSSNPEKLAKAIVEA  253 (298)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             35764655789999984778247534200056778999999999


No 307
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=88.24  E-value=2.2  Score=22.79  Aligned_cols=113  Identities=18%  Similarity=0.272  Sum_probs=77.5

Q ss_pred             CCHHHHHHHHHHCCCEEEEEEECCCCH-HHHHHHHHHCCEEEEEEE-ECCCCCCCCC-CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             215899986776498259985233344-789988620140289983-0677653322-0135778998654313865269
Q gi|254780975|r   97 PHIRRSLRTIHAMGKKTGVAINPETPV-AILEDVIDEIDMILIMTV-NPGFGGQQLI-ESTIPKIRQAKALIGKRSISLE  173 (224)
Q Consensus        97 ~~~~~~i~~i~~~g~k~Giai~p~T~~-~~i~~~l~~~D~vliM~V-~PG~~Gq~f~-~~~l~kI~~l~~~~~~~~~~I~  173 (224)
                      +|+.++++..+.. ++-|...-|++.- -.+.+-|.++--.-+|-- -|=-+||... +..+..|++      +.++.+.
T Consensus       182 Pd~~etl~Aae~L-v~eGF~VlpY~~dDpv~akrLed~Gc~avMPlgsPIGSg~Gi~n~~~i~~i~e------~~~vpvi  254 (327)
T PRK11840        182 PDMVETLKAAEVL-VKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVE------GAKVPVL  254 (327)
T ss_pred             CCHHHHHHHHHHH-HHCCCEEEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHH------HCCCCEE
T ss_conf             9858999999999-97898898871698689999987598388622452347888689999999997------3699789


Q ss_pred             EECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf             815899-8899999967998999742663789989999999999
Q gi|254780975|r  174 VDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       174 vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l  216 (224)
                      ||.||. ...+...-+.|+|-+-+-|||-.++||...++.++.-
T Consensus       255 vDAGiG~pS~A~~aMElG~daVL~NTAiA~a~~Pv~MA~A~~~a  298 (327)
T PRK11840        255 VDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPILMARAMKLA  298 (327)
T ss_pred             EECCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHH
T ss_conf             95798987899999863666666336767269979999999999


No 308
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=87.98  E-value=1.5  Score=23.84  Aligned_cols=60  Identities=15%  Similarity=0.263  Sum_probs=32.6

Q ss_pred             EEEECCHHHHHHCCC---C--CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHH-HHHHHHH
Q ss_conf             885120336764047---7--6079997066421589998677649825998523334478-9988620
Q gi|254780975|r   70 MISSIDSHINIIADA---G--CDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAI-LEDVIDE  132 (224)
Q Consensus        70 Mv~~P~~~i~~~~~~---g--~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~-i~~~l~~  132 (224)
                      .+++|.+-++++...   +  .-.|-||+|++..-. .+-  .-..-++...+.-.|-+-. =..+|+.
T Consensus       124 ~~d~PF~~~d~l~~~~~~~~~~iiVDFHAEtTSEK~-a~g--~yldGrvsavvGTHTHV~TaD~rIL~~  189 (266)
T COG1692         124 ALDNPFKAADKLLDEIKLGTDLIIVDFHAETTSEKN-AFG--WYLDGRVSAVVGTHTHVPTADERILPK  189 (266)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHH-HHH--EEECCEEEEEEECCCCCCCCCCEECCC
T ss_conf             017978999999974746896499981265215552-010--688672889985467655641140579


No 309
>pfam06073 DUF934 Bacterial protein of unknown function (DUF934). This family consists of several bacterial proteins of unknown function. One of the members of this family is thought to be an oxidoreductase.
Probab=87.72  E-value=2.3  Score=22.58  Aligned_cols=76  Identities=21%  Similarity=0.378  Sum_probs=57.2

Q ss_pred             EEEEECCCCHHHHHHHHHHCCEEEEEEEE-CCCC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCC
Q ss_conf             99852333447899886201402899830-6776-533220135778998654313865269815899889999996799
Q gi|254780975|r  114 GVAINPETPVAILEDVIDEIDMILIMTVN-PGFG-GQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGA  191 (224)
Q Consensus       114 Giai~p~T~~~~i~~~l~~~D~vliM~V~-PG~~-Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Ga  191 (224)
                      |+-|.|+.+++.+.+.++.+..|   .++ |.|. |.     .++.-+.||+.+. +.-+|-.=|.|-.+.+.-+..+|.
T Consensus         1 GV~L~~d~d~~~l~~~L~~l~lI---~i~Fp~f~DGR-----gfS~Ar~LR~r~g-y~GelRA~G~vl~DQl~~~~R~Gf   71 (110)
T pfam06073         1 GVWLEPDDDPEELAPDLDRLALI---ALDFPAFTDGR-----GYSQARLLRERYG-YKGELRAVGDVLRDQLFFMLRCGF   71 (110)
T ss_pred             CEEECCCCCHHHHHHHHCCCCEE---EEECCCCCCCC-----HHHHHHHHHHHCC-CCCCEEEECCCHHHHHHHHHHCCC
T ss_conf             94626999999998754557679---99889876862-----4079999999719-987157744500989999997598


Q ss_pred             CEEEECH
Q ss_conf             8999742
Q gi|254780975|r  192 DLLVVGS  198 (224)
Q Consensus       192 d~~V~Gs  198 (224)
                      |.+.+-.
T Consensus        72 dsf~l~~   78 (110)
T pfam06073        72 DSFALRA   78 (110)
T ss_pred             CEEEECC
T ss_conf             8797569


No 310
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=86.87  E-value=2.6  Score=22.28  Aligned_cols=131  Identities=18%  Similarity=0.237  Sum_probs=76.0

Q ss_pred             EEEEEECCHHHHHHCC--CCCCEEEEECC----CCCCHHHHHHHHHHCC--CEEEEEEECCCCHHHHHHHHH--HCCEEE
Q ss_conf             6788512033676404--77607999706----6421589998677649--825998523334478998862--014028
Q gi|254780975|r   68 HLMISSIDSHINIIAD--AGCDIITFHPE----SSPHIRRSLRTIHAMG--KKTGVAINPETPVAILEDVID--EIDMIL  137 (224)
Q Consensus        68 HLMv~~P~~~i~~~~~--~g~d~i~~H~E----~~~~~~~~i~~i~~~g--~k~Giai~p~T~~~~i~~~l~--~~D~vl  137 (224)
                      ||.-..-..+|-+...  -|.+.|+-..-    +.+|+.+.|..+|+.+  .++++=+-....++.+.--..  ..|.|+
T Consensus       253 ~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~  332 (485)
T COG0069         253 QLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVIT  332 (485)
T ss_pred             CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEE
T ss_conf             89976579889976189988777589974665698899999999996188970699992565567787666404698899


Q ss_pred             EEEEECCCCCCCCC---C--------HHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHH
Q ss_conf             99830677653322---0--------135778998654313865269815899-88999999679989997426
Q gi|254780975|r  138 IMTVNPGFGGQQLI---E--------STIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSS  199 (224)
Q Consensus       138 iM~V~PG~~Gq~f~---~--------~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsa  199 (224)
                      +=+- +|-.|-...   .        ...+--..|++.--+..+.|++|||+. ...+.+....|||.+-.|++
T Consensus       333 IdG~-~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa  405 (485)
T COG0069         333 IDGA-DGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTA  405 (485)
T ss_pred             ECCC-CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHCHH
T ss_conf             7589-986787856576368707998899999999975986416999428706789999999708645520219


No 311
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=86.87  E-value=2.6  Score=22.28  Aligned_cols=113  Identities=19%  Similarity=0.283  Sum_probs=62.0

Q ss_pred             HHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCC--CCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             998677649825998523334478998862-0140289983067765332--2013577899865431386526981589
Q gi|254780975|r  102 SLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQL--IESTIPKIRQAKALIGKRSISLEVDGGV  178 (224)
Q Consensus       102 ~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f--~~~~l~kI~~l~~~~~~~~~~I~vDGGv  178 (224)
                      .++|+|+.=..+ |.+.-=...+.-..-.+ -+|-|.| | |=  +|..+  .+.+++-+-++++... ..+++.+||||
T Consensus       236 di~wlr~~w~~p-lvlKGIl~~eDA~~A~~~G~dgIiV-S-NH--GGRQLD~apa~i~~LpeI~~aV~-~~~~V~~DgGi  309 (381)
T PRK11197        236 DLEWIREFWDGP-MVIKGILDPEDARDAVRFGADGIVV-S-NH--GGRQLDGVLSSARALPAIADAVK-GDIAILADSGI  309 (381)
T ss_pred             HHHHHHHHCCCC-EEEECCCCHHHHHHHHHCCCCEEEE-E-CC--CCCCCCCCCCHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf             999999872997-6785258899999999669988999-5-77--63215678448999999999867-89739996897


Q ss_pred             CH-HHHHHHHHCCCCEEEECH-HHHCC-CCHHHHHHHHHHHHHHH
Q ss_conf             98-899999967998999742-66378-99899999999999978
Q gi|254780975|r  179 TS-RNIKSLVQAGADLLVVGS-SFFNQ-KGEISYAKRLNDLKKSA  220 (224)
Q Consensus       179 n~-~~i~~l~~~Gad~~V~Gs-aif~~-~d~~~~~~~l~~l~~~a  220 (224)
                      +. ..+-+....||+.+-+|. ++|+- -...+-.+...++.+.+
T Consensus       310 RrG~DV~KALALGA~aV~vGRp~lygLaa~G~~GV~~~l~iL~~E  354 (381)
T PRK11197        310 RNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKE  354 (381)
T ss_pred             CCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             866899999976998897675999987713388999999999999


No 312
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319   This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=86.76  E-value=2.7  Score=22.24  Aligned_cols=32  Identities=16%  Similarity=0.204  Sum_probs=27.3

Q ss_pred             EEEEEEEEECCH--HHHHHCCCCCCEEEEECCCCCCH
Q ss_conf             685678851203--36764047760799970664215
Q gi|254780975|r   65 FDCHLMISSIDS--HINIIADAGCDIITFHPESSPHI   99 (224)
Q Consensus        65 ~dvHLMv~~P~~--~i~~~~~~g~d~i~~H~E~~~~~   99 (224)
                      +++-+|++-|..  .+++|++.|.|=.+|   .++||
T Consensus       755 l~~~vM~E~PsnvlLAd~f~~~GfDGFSi---GSNDL  788 (877)
T TIGR01418       755 LEVYVMCEVPSNVLLADEFAKLGFDGFSI---GSNDL  788 (877)
T ss_pred             CEEEEEEEHHHHHHHHHHHHHHCCCEEEE---CCCHH
T ss_conf             57999883568999999898508771565---75168


No 313
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2.  This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=86.68  E-value=2.7  Score=22.21  Aligned_cols=97  Identities=15%  Similarity=0.230  Sum_probs=58.8

Q ss_pred             HHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-
Q ss_conf             998677649825998523334478998862-014028998306776533220135778998654313865269815899-
Q gi|254780975|r  102 SLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-  179 (224)
Q Consensus       102 ~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-  179 (224)
                      .++|+++.-..+ +.+.-=...+.-..-.+ -+|.|.+ | |-|--.....+.+++-+-++++... ..++|.+||||+ 
T Consensus       212 di~~lr~~~~lp-lilKGI~~~eDA~~A~~~G~dgIvV-S-NHGGRQLD~~p~~i~~LpeI~~av~-~~~~V~~DgGIR~  287 (351)
T cd04737         212 DIEFIAKISGLP-VIVKGIQSPEDADVAINAGADGIWV-S-NHGGRQLDGGPASFDSLPEIAEAVN-HRVPIIFDSGVRR  287 (351)
T ss_pred             HHHHHHHHCCCC-EEECCCCCHHHHHHHHHCCCCEEEE-C-CCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEECCCCCC
T ss_conf             999999864998-5323667799999998749988997-7-8751235676047889999999866-8964997698674


Q ss_pred             HHHHHHHHHCCCCEEEECH-HHHC
Q ss_conf             8899999967998999742-6637
Q gi|254780975|r  180 SRNIKSLVQAGADLLVVGS-SFFN  202 (224)
Q Consensus       180 ~~~i~~l~~~Gad~~V~Gs-aif~  202 (224)
                      -..+-+....|||.+-+|. ++|.
T Consensus       288 G~DV~KALALGA~aV~iGRp~l~g  311 (351)
T cd04737         288 GEHVFKALASGADAVAVGRPVLYG  311 (351)
T ss_pred             HHHHHHHHHCCCCEEEECHHHHHH
T ss_conf             689999997699889757899998


No 314
>PRK08508 biotin synthase; Provisional
Probab=86.41  E-value=2.8  Score=22.12  Aligned_cols=189  Identities=14%  Similarity=0.116  Sum_probs=103.0

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC--HHHHHHHHHCC-CCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf             889999999999965998999973426345843417--89999864125-641685678851203367640477607999
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG--ADVIRSLRSYS-DSVFDCHLMISSIDSHINIIADAGCDIITF   91 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~--~~~i~~i~~~t-~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~   91 (224)
                      +.-.+.+..+...+.|+..+-+ ++-|.=.+.-.+.  -+.++.||+.+ ++.+-+-+ =.-.......+.++|+|+..-
T Consensus        41 ~~eeIl~~A~~a~~~G~~rf~l-v~sg~~~~~~~~e~v~~~v~~Ik~~~~~l~~c~sl-G~l~~e~~~~LkeAGvdrY~h  118 (279)
T PRK08508         41 EIEQIVQEAKMARANGALGFCL-VTAGRGLDDKKLEYVAKAAKAVKKEVPGLHLIACN-GMASVEQLKELKKAGIFSYNH  118 (279)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEE-EEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC-CCCCHHHHHHHHHCCCCEECC
T ss_conf             9999999999999759976899-98236887544999999999986337993576117-857999999999839712307


Q ss_pred             ECCCCCC-------------HHHHHHHHHHCCCEE--EEEEECCCCHHHHHHHH---H--HCCEEEEEEEE--CC--CCC
Q ss_conf             7066421-------------589998677649825--99852333447899886---2--01402899830--67--765
Q gi|254780975|r   92 HPESSPH-------------IRRSLRTIHAMGKKT--GVAINPETPVAILEDVI---D--EIDMILIMTVN--PG--FGG  147 (224)
Q Consensus        92 H~E~~~~-------------~~~~i~~i~~~g~k~--Giai~p~T~~~~i~~~l---~--~~D~vliM~V~--PG--~~G  147 (224)
                      -.|+.+.             =.++++.+|+.|.++  |.-+..+...+.....+   .  .+|.|=+.--.  ||  +..
T Consensus       119 NlETs~~~y~~I~tThty~dRl~tl~~~k~aGl~vCsGgIiGlGEt~edrve~a~~L~eL~~dsVPIN~liPi~GTPLe~  198 (279)
T PRK08508        119 NLETSKEFFPKICTTHSWEERFQTCLNAKEAGLGLCSGGIFGLGESWEDRISMLKSLASLSPHSTPINFFIPNPALPLDT  198 (279)
T ss_pred             CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCC
T ss_conf             66767687576589988899999999999819948678544789998999999999983899875156765899998888


Q ss_pred             CCCCC-HHHHHHHHHHHHHHCCCCEEEEECCCC---HHHHHHHHHCCCCEEEECHHHHCCCCHH
Q ss_conf             33220-135778998654313865269815899---8899999967998999742663789989
Q gi|254780975|r  148 QQLIE-STIPKIRQAKALIGKRSISLEVDGGVT---SRNIKSLVQAGADLLVVGSSFFNQKGEI  207 (224)
Q Consensus       148 q~f~~-~~l~kI~~l~~~~~~~~~~I~vDGGvn---~~~i~~l~~~Gad~~V~Gsaif~~~d~~  207 (224)
                      .+..+ .++.-|.-+|=+.|+..  |-+-||-.   .+.-..+..+|||.+..|.++-..-...
T Consensus       199 ~~l~~~e~lr~iAl~RlilP~a~--Ir~agGRe~~l~~~q~~~~~aGaN~i~~G~yLTt~G~~~  260 (279)
T PRK08508        199 PTLSADEALEIVRLAKEALPNAR--LMVAGGREVVFGERQYEIFEAGANAIVIGDYLTTKGEAP  260 (279)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCE--EEECCCHHHHCHHHHHHHHHHCCCEEEECCCCCCCCCCH
T ss_conf             99999999999999999789876--562465244556369999984684688866527899786


No 315
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.39  E-value=2.8  Score=22.12  Aligned_cols=126  Identities=15%  Similarity=0.212  Sum_probs=72.4

Q ss_pred             HCCCCCCEEEEECCCC---------------C-----------CHHHHHHHHHHC-C------CEEEEEEECCC------
Q ss_conf             4047760799970664---------------2-----------158999867764-9------82599852333------
Q gi|254780975|r   81 IADAGCDIITFHPESS---------------P-----------HIRRSLRTIHAM-G------KKTGVAINPET------  121 (224)
Q Consensus        81 ~~~~g~d~i~~H~E~~---------------~-----------~~~~~i~~i~~~-g------~k~Giai~p~T------  121 (224)
                      ..++|.|-|-+|.-+.               +           -+.++++.+|+. |      .-+|+=++++.      
T Consensus       153 A~~AGfDgVEiH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~vg~~~~~df~vgvRis~~e~~~~G~  232 (353)
T cd04735         153 AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGI  232 (353)
T ss_pred             HHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHCCCCCC
T ss_conf             99839998997546575999853998899847367988999889999999999985400589733675158654147999


Q ss_pred             CHHHHHHHH---HH--CCEEEEEEEECCCCCCCC-CCHHHHH-HHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCE
Q ss_conf             447899886---20--140289983067765332-2013577-899865431386526981589-988999999679989
Q gi|254780975|r  122 PVAILEDVI---DE--IDMILIMTVNPGFGGQQL-IESTIPK-IRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADL  193 (224)
Q Consensus       122 ~~~~i~~~l---~~--~D~vliM~V~PG~~Gq~f-~~~~l~k-I~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~  193 (224)
                      .++....++   ..  +|++.+-+  -++..... .+..... ...+++. ...++.+.+-||+ +.+.+.++++.|+|.
T Consensus       233 ~~~e~~~~~~~l~~~gvD~l~vs~--g~~~~~~~~~~~~~~~~~~~~~~~-~~~~iPvi~~G~i~~~~~ae~~l~~gaD~  309 (353)
T cd04735         233 RMEDTLALVDKLADKGLDYLHISL--WDFDRKSRRGRDDNQTIMELVKER-IAGRLPLIAVGSINTPDDALEALETGADL  309 (353)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCCCCCCHHHHHHHHHH-HCCCCCEEEECCCCCHHHHHHHHHCCCCH
T ss_conf             999999999999847998899603--776677766777535589999999-67898099989999899999999869982


Q ss_pred             EEECHHHHCCCCHHHH
Q ss_conf             9974266378998999
Q gi|254780975|r  194 LVVGSSFFNQKGEISY  209 (224)
Q Consensus       194 ~V~Gsaif~~~d~~~~  209 (224)
                      +..|.++.-+||...-
T Consensus       310 V~~gR~liadPd~~~K  325 (353)
T cd04735         310 VAIGRGLLVDPDWVEK  325 (353)
T ss_pred             HHHHHHHHHCHHHHHH
T ss_conf             9986999979319999


No 316
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289   Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis .   This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=86.33  E-value=1.1  Score=24.77  Aligned_cols=135  Identities=13%  Similarity=0.226  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEE--CC--EECCC------------CCCCHHHHHHHHHCCC-CEEEEEEEEEECCHHHH
Q ss_conf             99999999999659989999734--26--34584------------3417899998641256-41685678851203367
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVM--DG--CFVPN------------ISFGADVIRSLRSYSD-SVFDCHLMISSIDSHIN   79 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDIm--Dg--~fvpn------------~~~~~~~i~~i~~~t~-~~~dvHLMv~~P~~~i~   79 (224)
                      .+.++.-+.+++.++|+|=.=|-  =|  .|-+|            -.++++.++.|.+.|+ +||=.|=-+.=|..+++
T Consensus       164 adp~Ea~~fV~eT~~D~LA~aIGt~HGa~kykgeqCtrnaDGvLiWp~LdF~~l~~I~~~~~G~PLVLHGaS~VP~e~v~  243 (339)
T TIGR01859       164 ADPDEAEQFVKETGVDYLAAAIGTSHGAFKYKGEQCTRNADGVLIWPGLDFERLKEIKELTNGIPLVLHGASSVPAEIVK  243 (339)
T ss_pred             CCHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHH
T ss_conf             58799999997638775401003502357888665330467235488889789999987508976673576568588999


Q ss_pred             HHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEE-EECCCCH-----HHHHHHHH--HCCEEEEEEEECC-CCCCCC
Q ss_conf             6404776079997066421589998677649825998-5233344-----78998862--0140289983067-765332
Q gi|254780975|r   80 IIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVA-INPETPV-----AILEDVID--EIDMILIMTVNPG-FGGQQL  150 (224)
Q Consensus        80 ~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Gia-i~p~T~~-----~~i~~~l~--~~D~vliM~V~PG-~~Gq~f  150 (224)
                      .+.++|.+.=    .+.-=|++.|++.    ++.|++ +|-+|+.     ..++++|.  ... =+-+. ++. |.-.+|
T Consensus       244 ~~~~~GG~L~----ds~GIP~e~ikkA----i~lGiaKiNidTe~riAf~~~~R~~l~dy~a~-dl~l~-k~~~yDPRK~  313 (339)
T TIGR01859       244 EVEEYGGELK----DSKGIPEEQIKKA----IKLGIAKINIDTECRIAFTAAIRKVLEDYEAK-DLELE-KKDEYDPRKI  313 (339)
T ss_pred             HHHHHCCCCC----CCCCCCHHHHHHH----HHCCCCEEEECCHHHHHHHHHHHHHHHHCCCC-CCCCC-CCCCCCCCCC
T ss_conf             9998187677----7776867899999----97291417658167899999999998411435-54025-8874466333


Q ss_pred             CCHHHHHHHHH
Q ss_conf             20135778998
Q gi|254780975|r  151 IESTIPKIRQA  161 (224)
Q Consensus       151 ~~~~l~kI~~l  161 (224)
                      .-...+-|++.
T Consensus       314 L~p~~~a~k~~  324 (339)
T TIGR01859       314 LGPAREAIKET  324 (339)
T ss_pred             CCHHHHHHHHH
T ss_conf             53168999999


No 317
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=86.27  E-value=2.8  Score=22.08  Aligned_cols=183  Identities=15%  Similarity=0.240  Sum_probs=117.5

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf             70632588999999999996599899997342634584341--7899998641256416856788512033676404776
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC   86 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~   86 (224)
                      |+.=+.|+..++--++..++.+..-+ +.+-.+.. ...++  -...++.+.+..+.|+-+||==-.....+....++|.
T Consensus        16 ~AfNv~~~e~~~avi~AAee~~sPvI-lq~s~~~~-~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~~~~e~i~~ai~~Gf   93 (276)
T cd00947          16 GAFNINNLETLKAILEAAEETRSPVI-LQISEGAI-KYAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGF   93 (276)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCEE-EECCHHHH-HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf             98787989999999999999689999-99786177-65899999999999999779999996687678999999998399


Q ss_pred             CEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEEE----------ECCCCHHHHHHHHHH--CCEEEEEEEECC
Q ss_conf             07999706642---1---589998677649825----9985----------233344789988620--140289983067
Q gi|254780975|r   87 DIITFHPESSP---H---IRRSLRTIHAMGKKT----GVAI----------NPETPVAILEDVIDE--IDMILIMTVNPG  144 (224)
Q Consensus        87 d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Giai----------~p~T~~~~i~~~l~~--~D~vliM~V~PG  144 (224)
                      +.|-+-.-..+   +   -.++.++++..|+-+    |-.=          ...|.++....+++.  +|.+   .|--|
T Consensus        94 ~SVM~DgS~lp~eeNi~~T~~vv~~ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~peea~~Fv~~TgvD~L---AvaiG  170 (276)
T cd00947          94 SSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDAL---AVAIG  170 (276)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE---EEECC
T ss_conf             879852898999999999999999999819848998640467567766653334899999999998598878---76416


Q ss_pred             CC-----C-C-CCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             76-----5-3-3220135778998654313865269815--89988999999679989997426637
Q gi|254780975|r  145 FG-----G-Q-QLIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       145 ~~-----G-q-~f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      ..     + . .++   +++++++++..   ++++-.-|  |+..+.++++.+.|+.-+-.++.+..
T Consensus       171 n~HG~yk~~~p~L~---~~~L~~I~~~~---~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~  231 (276)
T cd00947         171 TSHGAYKGGEPKLD---FDRLKEIAERV---NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRL  231 (276)
T ss_pred             CCCCCCCCCCCCCC---HHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHH
T ss_conf             43445689998648---89999999973---998797579999999999999849759986738999


No 318
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=86.20  E-value=2.8  Score=22.06  Aligned_cols=129  Identities=21%  Similarity=0.313  Sum_probs=83.6

Q ss_pred             EEECCHHHHHHCCCCCCEEEEECCCCCC--------HHHHHHHHHHCCCEEEE-EEECCCC--HHHHHHHHH---HC---
Q ss_conf             8512033676404776079997066421--------58999867764982599-8523334--478998862---01---
Q gi|254780975|r   71 ISSIDSHINIIADAGCDIITFHPESSPH--------IRRSLRTIHAMGKKTGV-AINPETP--VAILEDVID---EI---  133 (224)
Q Consensus        71 v~~P~~~i~~~~~~g~d~i~~H~E~~~~--------~~~~i~~i~~~g~k~Gi-ai~p~T~--~~~i~~~l~---~~---  133 (224)
                      .+.|++..+.....|-+++.+-.-.-+|        ..+++..||+.+-.+.| +|-|+-.  ...++-+++   ++   
T Consensus        99 ~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ir~~~P~t~iEvL~PDF~G~~~al~~v~~~~pdV~nH  178 (306)
T COG0320          99 PDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAGPDVFNH  178 (306)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCHHHC
T ss_conf             74278999999983898699975315666564568999999999963999648983865467899999998369611004


Q ss_pred             --CEE--EEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCH----HHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             --402--899830677653322013577899865431386--52698158998----89999996799899974266378
Q gi|254780975|r  134 --DMI--LIMTVNPGFGGQQLIESTIPKIRQAKALIGKRS--ISLEVDGGVTS----RNIKSLVQAGADLLVVGSSFFNQ  203 (224)
Q Consensus       134 --D~v--liM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~--~~I~vDGGvn~----~~i~~l~~~Gad~~V~Gsaif~~  203 (224)
                        .-|  |--.|.||...+    .+++-++.++++.+.--  -.|.+-=|=+.    ++...|.++|+|++..|-++=-+
T Consensus       179 NvETVprL~~~VRp~A~Y~----~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS  254 (306)
T COG0320         179 NVETVPRLYPRVRPGATYE----RSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPS  254 (306)
T ss_pred             CCCCCHHCCCCCCCCCCHH----HHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             5200001142568987688----899999999985898631121355057768999999999998599899730014776


No 319
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.19  E-value=2.8  Score=22.05  Aligned_cols=186  Identities=17%  Similarity=0.178  Sum_probs=111.0

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEE-ECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEE-CCHH------HHHHCCCCC
Q ss_conf             889999999999965998999973-42634584341789999864125641685678851-2033------676404776
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDV-MDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISS-IDSH------INIIADAGC   86 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDI-mDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~-P~~~------i~~~~~~g~   86 (224)
                      .+.+.++.++.. ..|.|-+.+-= -.|..--||   |..++.+++.+..-..+---+-+ |.+-      .--..-+|+
T Consensus         6 SPin~eEA~eAi-eGGAdIiDVKNP~EGSLGANF---PWvIr~i~Ev~p~d~~vSAT~GDvpYKPGT~slAalGaav~Ga   81 (235)
T COG1891           6 SPINREEAIEAI-EGGADIIDVKNPAEGSLGANF---PWVIREIREVVPEDQEVSATVGDVPYKPGTASLAALGAAVAGA   81 (235)
T ss_pred             CCCCHHHHHHHH-HCCCCEEECCCCCCCCCCCCC---HHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC
T ss_conf             567789999986-178866742684657666887---0799999975856635324306778898548899887675077


Q ss_pred             CEEEEECCCCCCHHH-------HHHHHHHCCC-EEEEEEE--CCCCHHHHHHHH-H------HCCEEEEEE-EECCCCCC
Q ss_conf             079997066421589-------9986776498-2599852--333447899886-2------014028998-30677653
Q gi|254780975|r   87 DIITFHPESSPHIRR-------SLRTIHAMGK-KTGVAIN--PETPVAILEDVI-D------EIDMILIMT-VNPGFGGQ  148 (224)
Q Consensus        87 d~i~~H~E~~~~~~~-------~i~~i~~~g~-k~Giai~--p~T~~~~i~~~l-~------~~D~vliM~-V~PG~~Gq  148 (224)
                      |||-+-.=.+.+-++       +....|..+- +.-+|-.  -...+..++|++ |      -+|.+++=| +..|.+  
T Consensus        82 DYiKVGLYg~kn~~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~DvaMvDTaiKDGks--  159 (235)
T COG1891          82 DYIKVGLYGTKNEEEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVAMVDTAIKDGKS--  159 (235)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHCCCCCCCCCHHHHHHCCCCEEEEECCCCCCHH--
T ss_conf             647873023665999999999999998613877448861443012116768231178898638988987500036516--


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf             3220135778998654313865269815899889999996799899974266378998
Q gi|254780975|r  149 QLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGE  206 (224)
Q Consensus       149 ~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~  206 (224)
                      -|.-...+.+.++-++-.+++++...-|++..+.++.+.+.|+|++=+-++.-..-|.
T Consensus       160 lFdfm~~e~l~eFvd~Ah~hGL~~AlAGs~~~ehlp~l~eig~DivGvRgaaC~~GDR  217 (235)
T COG1891         160 LFDFMDEEELEEFVDLAHEHGLEVALAGSLKFEHLPILKEIGPDIVGVRGAACEGGDR  217 (235)
T ss_pred             HHHHHCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCCCC
T ss_conf             7755059999999999987245877504455000527887188735520000257874


No 320
>pfam01070 FMN_dh FMN-dependent dehydrogenase.
Probab=86.13  E-value=2.9  Score=22.03  Aligned_cols=143  Identities=15%  Similarity=0.276  Sum_probs=86.4

Q ss_pred             HHHHHHCCCCEEEEEEEEEEC----CHHHHHHCCCCCCEEEEECCCCCC--------HHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             998641256416856788512----033676404776079997066421--------58999867764982599852333
Q gi|254780975|r   54 IRSLRSYSDSVFDCHLMISSI----DSHINIIADAGCDIITFHPESSPH--------IRRSLRTIHAMGKKTGVAINPET  121 (224)
Q Consensus        54 i~~i~~~t~~~~dvHLMv~~P----~~~i~~~~~~g~d~i~~H~E~~~~--------~~~~i~~i~~~g~k~Giai~p~T  121 (224)
                      ++++.+...-+.=..|.+...    ++.++....+|++-+.+|..+...        --+.++|+++.=.-+ +.+.-=.
T Consensus       100 ~e~i~~~~~~~~~fQly~~~d~~~~~~~i~ra~~ag~~al~ltvD~~~~g~r~~d~r~~~~i~~l~~~~~~P-vivKGI~  178 (301)
T pfam01070       100 LEEVAAAAGGPLWFQLYVPKDRELTEDLLERAEAAGYKALVLTVDTPVLGNRERDLRNGDDLAWLRDQWKGP-LVLKGIL  178 (301)
T ss_pred             HHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCC-EEEECCC
T ss_conf             278898579976899874588899999999999749997999726876577853204399999999866998-8998289


Q ss_pred             CHHHHHHHHHH-CCEEEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHCCCCEEEEC
Q ss_conf             44789988620-1402899830677653--322013577899865431386526981589988-9999996799899974
Q gi|254780975|r  122 PVAILEDVIDE-IDMILIMTVNPGFGGQ--QLIESTIPKIRQAKALIGKRSISLEVDGGVTSR-NIKSLVQAGADLLVVG  197 (224)
Q Consensus       122 ~~~~i~~~l~~-~D~vliM~V~PG~~Gq--~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~-~i~~l~~~Gad~~V~G  197 (224)
                      +.+.-+...+. +|.|.+ |   +.+|.  .+-+.+++-+.++++... .+++|.+||||+.- .+-+....|||.+-+|
T Consensus       179 s~eDA~~a~~~Gv~~I~V-S---nHGGRqlD~~~~t~~~L~eI~~~v~-~~~~i~~DGGIR~G~DV~KAlALGA~~V~iG  253 (301)
T pfam01070       179 SPEDAKRAVEAGVDGIVV-S---NHGGRQLDGAPATIDALPEIVAAVG-GRIPVLVDGGIRRGTDVLKALALGADAVLLG  253 (301)
T ss_pred             CHHHHHHHHHCCCCEEEE-C---CCCCCCCCCCCCHHHHHHHHHHHHC-CCEEEEECCCCCCCHHHHHHHHCCCCEEEEC
T ss_conf             999999999859999996-4---9985446888679999999999856-7748996387476268999998089866556


Q ss_pred             HH-HHC
Q ss_conf             26-637
Q gi|254780975|r  198 SS-FFN  202 (224)
Q Consensus       198 sa-if~  202 (224)
                      .. ++.
T Consensus       254 Rp~l~a  259 (301)
T pfam01070       254 RPFLYG  259 (301)
T ss_pred             HHHHHH
T ss_conf             899999


No 321
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain.  DCR in E. coli  is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=85.97  E-value=2.9  Score=21.98  Aligned_cols=122  Identities=13%  Similarity=0.157  Sum_probs=73.1

Q ss_pred             HCCCCCCEEEEECCCC----------------------C----CHHHHHHHHHHC-CC--EEEEEEECCC------CHHH
Q ss_conf             4047760799970664----------------------2----158999867764-98--2599852333------4478
Q gi|254780975|r   81 IADAGCDIITFHPESS----------------------P----HIRRSLRTIHAM-GK--KTGVAINPET------PVAI  125 (224)
Q Consensus        81 ~~~~g~d~i~~H~E~~----------------------~----~~~~~i~~i~~~-g~--k~Giai~p~T------~~~~  125 (224)
                      ..++|.|-|-+|.-+.                      +    -+.++++.+|+. |-  -+|+=+++..      ++++
T Consensus       146 A~~AGfDgVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aVr~~vg~d~~v~~Ris~~d~~~~G~~~~e  225 (353)
T cd02930         146 AREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEE  225 (353)
T ss_pred             HHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHH
T ss_conf             99829998996256761487733875478857457987888799999999999970998749997360126899989999


Q ss_pred             HHHHHHH-----CCEEEEEEEECCCCCC-------CCCCHH-HHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCC-
Q ss_conf             9988620-----1402899830677653-------322013-577899865431386526981589-988999999679-
Q gi|254780975|r  126 LEDVIDE-----IDMILIMTVNPGFGGQ-------QLIEST-IPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAG-  190 (224)
Q Consensus       126 i~~~l~~-----~D~vliM~V~PG~~Gq-------~f~~~~-l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~G-  190 (224)
                      ...++..     +|++.+-+   |+...       .+-+.. ..-.+.+|   ...++.+.+-||+ +.+.+.++++.| 
T Consensus       226 ~~~~~~~l~~~GvD~i~vs~---G~~~~~~~~~~~~~p~g~~~~~a~~ir---~~~~~Pvi~~G~i~~p~~ae~~l~~g~  299 (353)
T cd02930         226 VVALAKALEAAGADILNTGI---GWHEARVPTIATSVPRGAFAWATAKLK---RAVDIPVIASNRINTPEVAERLLADGD  299 (353)
T ss_pred             HHHHHHHHHHCCCCEEEECC---CCCCCCCCCCCCCCCCHHHHHHHHHHH---HHCCCCEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999981999999637---744466875334577236699999988---754834896599798999999998799


Q ss_pred             CCEEEECHHHHCCCCHHH
Q ss_conf             989997426637899899
Q gi|254780975|r  191 ADLLVVGSSFFNQKGEIS  208 (224)
Q Consensus       191 ad~~V~Gsaif~~~d~~~  208 (224)
                      +|.+..|.++.-+||...
T Consensus       300 aD~V~~gR~liadPdl~~  317 (353)
T cd02930         300 ADMVSMARPFLADPDFVA  317 (353)
T ss_pred             CCHHHHHHHHHHCCHHHH
T ss_conf             624784099876936999


No 322
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=85.76  E-value=3  Score=21.92  Aligned_cols=141  Identities=9%  Similarity=0.076  Sum_probs=73.7

Q ss_pred             CCEEEEEEEEEECCHHHH---HHCCCCCCEEEEECCC--------------CCCH---HHHHHHHHHC---CC----EEE
Q ss_conf             641685678851203367---6404776079997066--------------4215---8999867764---98----259
Q gi|254780975|r   62 DSVFDCHLMISSIDSHIN---IIADAGCDIITFHPES--------------SPHI---RRSLRTIHAM---GK----KTG  114 (224)
Q Consensus        62 ~~~~dvHLMv~~P~~~i~---~~~~~g~d~i~~H~E~--------------~~~~---~~~i~~i~~~---g~----k~G  114 (224)
                      ..|+-+.|+-.+|+...+   .+.+.|++.|-+-.-+              ..++   .++++.+++.   +.    |.-
T Consensus        62 ~~Pv~vQl~G~dpe~~a~aA~~~~e~g~~~IDlN~GCP~~~V~k~g~Gs~Ll~~p~~~~~iv~a~~~~v~~~iPVtvK~R  141 (312)
T PRK10550         62 GTLVRIQLLGQYPQWLAENAARAVELGSYGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR  141 (312)
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             88368884278889999999999976999662547999789668992685328977999999999974587899547753


Q ss_pred             EEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHH-HHCC
Q ss_conf             985233344789988620140289983067765332201--357789986543138652698158998-899999-9679
Q gi|254780975|r  115 VAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIES--TIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSL-VQAG  190 (224)
Q Consensus       115 iai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~--~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l-~~~G  190 (224)
                      +...-......+.+.+... -+-.++|+|...-|.+...  -.+.|+++++.   .++.+..-|+|.. +.+..+ ...|
T Consensus       142 lG~~~~~~~~e~~~~~~~~-G~~~ltvH~RT~~q~y~~~~~dw~~i~~~~~~---~~iPvi~NGdI~s~~d~~~~~~~tg  217 (312)
T PRK10550        142 LGWDSGDRKFEIADAVQQA-GATELVVHGRTKEQGYRAEHIDWQAIGEIRQR---LTIPVIANGEIWDWQSAQQCMAISG  217 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHC-CCCEEEEECCCHHHCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHHC
T ss_conf             5899863199999999973-99879990552653589983489999999974---8998997079599999999987148


Q ss_pred             CCEEEECHHHHCCCCH
Q ss_conf             9899974266378998
Q gi|254780975|r  191 ADLLVVGSSFFNQKGE  206 (224)
Q Consensus       191 ad~~V~Gsaif~~~d~  206 (224)
                      +|-+-.|.+.+++|..
T Consensus       218 ~dgvMiGRgal~nP~l  233 (312)
T PRK10550        218 CDAVMIGRGALNIPNL  233 (312)
T ss_pred             CCEEEECHHHHHCCHH
T ss_conf             9999965855309779


No 323
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases.  It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=85.71  E-value=3  Score=21.90  Aligned_cols=115  Identities=11%  Similarity=0.160  Sum_probs=63.9

Q ss_pred             HHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf             998677649825998523334478998862-0140289983067765332201357789986543138652698158998
Q gi|254780975|r  102 SLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS  180 (224)
Q Consensus       102 ~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~  180 (224)
                      .++|+|+.=.. =+.+.-=...+.-..-.+ -+|-|.| | |-|--.-.--+.+++-+-++++... ..+++.+||||+.
T Consensus       244 di~wlr~~w~~-plilKGI~~~eDA~~A~~~G~dgIiV-S-NHGGRQLD~apa~i~~LpeI~~aV~-~~~~V~~DgGIRr  319 (383)
T cd03332         244 DLAFLREWTDL-PIVLKGILHPDDARRAVEAGVDGVVV-S-NHGGRQVDGSIAALDALPEIVEAVG-DRLTVLFDSGVRT  319 (383)
T ss_pred             HHHHHHHHCCC-CEEECCCCCHHHHHHHHHCCCCEEEE-E-CCCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCC
T ss_conf             99999987699-85323568999999999759988998-0-7863446788327899999999847-9984999799786


Q ss_pred             -HHHHHHHHCCCCEEEECH-HHHC-CCCHHHHHHHHHHHHHHH
Q ss_conf             -899999967998999742-6637-899899999999999978
Q gi|254780975|r  181 -RNIKSLVQAGADLLVVGS-SFFN-QKGEISYAKRLNDLKKSA  220 (224)
Q Consensus       181 -~~i~~l~~~Gad~~V~Gs-aif~-~~d~~~~~~~l~~l~~~a  220 (224)
                       ..+-+....||+.+-+|. .+|. .-...+-.++..++.+.+
T Consensus       320 G~DV~KAlALGA~~V~iGRp~l~glaa~G~~GV~~~l~iL~~E  362 (383)
T cd03332         320 GADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAE  362 (383)
T ss_pred             HHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             7999999976999898778999987723199999999999999


No 324
>PRK12999 pyruvate carboxylase; Reviewed
Probab=85.60  E-value=3  Score=21.87  Aligned_cols=143  Identities=17%  Similarity=0.228  Sum_probs=78.9

Q ss_pred             CHHHHHHHHH-CCCCEEEEEEE-------EEECCH----HHHHHCCCCCCEEEEECCCCC---CHHHHHHHHHHCCCEEE
Q ss_conf             7899998641-25641685678-------851203----367640477607999706642---15899986776498259
Q gi|254780975|r   50 GADVIRSLRS-YSDSVFDCHLM-------ISSIDS----HINIIADAGCDIITFHPESSP---HIRRSLRTIHAMGKKTG  114 (224)
Q Consensus        50 ~~~~i~~i~~-~t~~~~dvHLM-------v~~P~~----~i~~~~~~g~d~i~~H~E~~~---~~~~~i~~i~~~g~k~G  114 (224)
                      +++.++.+|+ .++.++--=|=       ...|.+    |+++..+.|.|.+-+- .+.+   ++...++..++.|..+-
T Consensus       594 Pw~Rl~~lr~~~pn~~~QmLlRg~N~vGY~~Ypdnvv~~fv~~a~~~GiDvfRiF-D~LN~~~nm~~~i~~v~~~g~~~e  672 (1147)
T PRK12999        594 PWERLAELREAMPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIF-DSLNWVENMRVAIDAVRETGKVAE  672 (1147)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE-CCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             2899999998677734665312244457667973799999999998398911673-134466778999999997098899


Q ss_pred             EEEE-------CCCCHHHHHHHHHHCCEEEEE-----EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE----EECCC
Q ss_conf             9852-------333447899886201402899-----8306776533220135778998654313865269----81589
Q gi|254780975|r  115 VAIN-------PETPVAILEDVIDEIDMILIM-----TVNPGFGGQQLIESTIPKIRQAKALIGKRSISLE----VDGGV  178 (224)
Q Consensus       115 iai~-------p~T~~~~i~~~l~~~D~vliM-----~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~----vDGGv  178 (224)
                      -+|+       |..|...+++|++....+.=|     ++.- -+|---=..+.+.|+.||+-   .++.|.    --.|.
T Consensus       673 ~aicyTGdi~dp~~~~~~l~yy~~~a~~l~~~G~~~l~IKD-MAGLl~P~aa~~LV~aLk~~---~~lPIhlHtHdTsG~  748 (1147)
T PRK12999        673 AAICYTGDILDPARAKYDLDYYVDLAKELEAAGAHILAIKD-MAGLLKPAAAYKLVSALKEE---VDLPIHLHTHDTSGN  748 (1147)
T ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC-CCCCCCHHHHHHHHHHHHHH---CCCCEEEECCCCCCH
T ss_conf             99874257778788876699999999999976898899714-45468879999999999861---698459843678855


Q ss_pred             CHHHHHHHHHCCCCEEEEC
Q ss_conf             9889999996799899974
Q gi|254780975|r  179 TSRNIKSLVQAGADLLVVG  197 (224)
Q Consensus       179 n~~~i~~l~~~Gad~~V~G  197 (224)
                      ..-++-...+||||++=..
T Consensus       749 ~~at~laA~eAGvDiVD~A  767 (1147)
T PRK12999        749 GLATYLAAAEAGVDIVDVA  767 (1147)
T ss_pred             HHHHHHHHHHCCCCEEECC
T ss_conf             8999999998599989635


No 325
>pfam00224 PK Pyruvate kinase, barrel domain. This domain of the is actually a small beta-barrel domain nested within a larger TIM barrel. The active site is found in a cleft between the two domains.
Probab=85.55  E-value=3.1  Score=21.85  Aligned_cols=147  Identities=10%  Similarity=0.090  Sum_probs=92.1

Q ss_pred             EEEECCHHHHHHCCCCCCEEEEEC-CCCCCHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHHCCEEEE----EEEE
Q ss_conf             885120336764047760799970-66421589998677649825998523334--4789988620140289----9830
Q gi|254780975|r   70 MISSIDSHINIIADAGCDIITFHP-ESSPHIRRSLRTIHAMGKKTGVAINPETP--VAILEDVIDEIDMILI----MTVN  142 (224)
Q Consensus        70 Mv~~P~~~i~~~~~~g~d~i~~H~-E~~~~~~~~i~~i~~~g~k~Giai~p~T~--~~~i~~~l~~~D~vli----M~V~  142 (224)
                      +++.=.+.++...+.|+|+|.+-+ .+.+++..+-+.+++.|..+.|.-.-+|+  ++.+..++...|.|++    |+++
T Consensus       174 lTekD~~di~~a~~~~vD~ialSFVrsa~Di~~lr~~l~~~~~~~~IIaKIE~~~al~Nl~eIi~~sDgImIARGDLg~e  253 (348)
T pfam00224       174 LSEKDKADLRFGVKQGVDMIFASFVRTASDVLEVREVLGEAGKDIKIIAKIENQEGVNNFDEILEASDGIMVARGDLGIE  253 (348)
T ss_pred             CCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEECCCCCCC
T ss_conf             88767999999997799999987889999999999999973887605998447898867888998588899844764455


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE---------ECCCC----HHHHHHHHHCCCCEEEECHHHHCCCCHHHH
Q ss_conf             67765332201357789986543138652698---------15899----889999996799899974266378998999
Q gi|254780975|r  143 PGFGGQQLIESTIPKIRQAKALIGKRSISLEV---------DGGVT----SRNIKSLVQAGADLLVVGSSFFNQKGEISY  209 (224)
Q Consensus       143 PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~v---------DGGvn----~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~  209 (224)
                      .|+.--+   ..=.+   +-+...+.+-.+.|         ....-    ...+...+..|+|.+.+..---..+.|.++
T Consensus       254 i~~e~vp---~~Qk~---ii~~~~~~~kpvivATqmLeSM~~~~~PTRAEv~Dvanav~dGad~vmLs~ETa~G~~P~~~  327 (348)
T pfam00224       254 IPAEEVF---LAQKM---LIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGNYPVEA  327 (348)
T ss_pred             CCHHHHH---HHHHH---HHHHHHHCCCCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHH
T ss_conf             8988989---99999---99999985992999827577651499985699999999998388889977402178799999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999997862
Q gi|254780975|r  210 AKRLNDLKKSALA  222 (224)
Q Consensus       210 ~~~l~~l~~~a~a  222 (224)
                      .+.+.+....++.
T Consensus       328 v~~l~~I~~~~E~  340 (348)
T pfam00224       328 VKMMARICLEAEK  340 (348)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999871


No 326
>pfam04476 DUF556 Protein of unknown function (DUF556). Family of uncharacterized, hypothetical prokaryotic proteins.
Probab=85.35  E-value=3.1  Score=21.79  Aligned_cols=181  Identities=17%  Similarity=0.190  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCEECCCC-CC---CHHHHHHHHHCC--CCEEEEEEEE--EECCHH---HHHHCCCCC
Q ss_conf             999999999965998999973426345843-41---789999864125--6416856788--512033---676404776
Q gi|254780975|r   18 RLGEEISNITKAGAKQIHFDVMDGCFVPNI-SF---GADVIRSLRSYS--DSVFDCHLMI--SSIDSH---INIIADAGC   86 (224)
Q Consensus        18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~-~~---~~~~i~~i~~~t--~~~~dvHLMv--~~P~~~---i~~~~~~g~   86 (224)
                      +.++.. ...++|+|.+  |+-+    |+- ++   .|+.+++++...  +.|+..-+=-  .+|...   .-.....|+
T Consensus         9 n~~EA~-~a~~~GaDII--DvKn----P~~GaLGa~~p~vi~~i~~~v~~~k~vSatiGD~p~~p~~is~aa~~~a~~Gv   81 (235)
T pfam04476         9 SVEEAL-EAIEGGADII--DVKN----PAEGSLGANFPWVIREIRELTPKDKLVSATVGDVPYKPGTVSLAALGAAVSGA   81 (235)
T ss_pred             CHHHHH-HHHHCCCCEE--EECC----CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCC
T ss_conf             999999-9986799989--8279----88888889999999999998567871689840788995167899987550389


Q ss_pred             CEEEEECC-------CCCCHHHHHHHHHHCCCEEEE--EEECCC------CHHHHHHHHHHCCEEEEEEEECCCCCCC-C
Q ss_conf             07999706-------642158999867764982599--852333------4478998862014028998306776533-2
Q gi|254780975|r   87 DIITFHPE-------SSPHIRRSLRTIHAMGKKTGV--AINPET------PVAILEDVIDEIDMILIMTVNPGFGGQQ-L  150 (224)
Q Consensus        87 d~i~~H~E-------~~~~~~~~i~~i~~~g~k~Gi--ai~p~T------~~~~i~~~l~~~D~vliM~V~PG~~Gq~-f  150 (224)
                      |||=+=.=       +.+.+..+...++......-+  +.-.+.      +.-.+...+...-+=-+|--+-+..|+. |
T Consensus        82 DyVKVGl~~~~~~~~~~e~~~~~~~av~~~~~~~~vVav~~AD~~~~~~~~p~~i~~~a~~~G~~gvMiDT~~K~g~sl~  161 (235)
T pfam04476        82 DYIKVGLYGVKNYDEAVEVMKNVVRAVKDFDSSKIVVAAGYADAYRIGAVEPLDVPEIAADAGADIAMLDTAIKDGTTLF  161 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHH
T ss_conf             98999437888679999999999999872278866999960103331388835679999975997899874667897666


Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             2013577899865431386526981589988999999679989997426637899
Q gi|254780975|r  151 IESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       151 ~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      .--..+.++.+.+.....+..+..-|+++.+.++.+...++|.+=.=|++-...|
T Consensus       162 d~~~~~~L~~fv~~a~~~gl~~gLAGSL~~~di~~l~~l~pd~~G~RgavC~ggd  216 (235)
T pfam04476       162 DHMKIEDLESFVKLARDNGLKVALAGSISWEHIEPLKEIGTDIVGVRGAVCEGGD  216 (235)
T ss_pred             HHCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHCCCCC
T ss_conf             6499999999999999759839984578888889998649998997455357998


No 327
>pfam01791 DeoC DeoC/LacD family aldolase. This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=84.45  E-value=3.4  Score=21.54  Aligned_cols=168  Identities=15%  Similarity=0.191  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC---CCCEEEEEE--EEEE-CCH-------HHHHHC
Q ss_conf             899999999999659989999734263458434178999986412---564168567--8851-203-------367640
Q gi|254780975|r   16 FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY---SDSVFDCHL--MISS-IDS-------HINIIA   82 (224)
Q Consensus        16 ~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~---t~~~~dvHL--Mv~~-P~~-------~i~~~~   82 (224)
                      +.++++-++++.++|++-+-+             .|..++..++.   ++...=+++  -... +.+       =++...
T Consensus        18 ~~di~~l~~~a~~~g~~avcv-------------~p~~v~~~~~~l~~~~v~~vv~fp~g~~~~~~k~~~~~~~ev~~Ai   84 (231)
T pfam01791        18 SADIKALVAEALEPGASAVCV-------------NPGYVALAARLLGKVDIALVIGFPAGTYLTPVKGRDVLVAEAEEAI   84 (231)
T ss_pred             HHHHHHHHHHHHHHCCCEEEE-------------CHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             689999999999879998998-------------7899999999865798369997479887765543100288799999


Q ss_pred             CCCCCEEEEECCC-----------CCCHHHHHHHHHHCCCEEEEEEECCCCH-------HHHHH---HHH--HCCEEEEE
Q ss_conf             4776079997066-----------4215899986776498259985233344-------78998---862--01402899
Q gi|254780975|r   83 DAGCDIITFHPES-----------SPHIRRSLRTIHAMGKKTGVAINPETPV-------AILED---VID--EIDMILIM  139 (224)
Q Consensus        83 ~~g~d~i~~H~E~-----------~~~~~~~i~~i~~~g~k~Giai~p~T~~-------~~i~~---~l~--~~D~vliM  139 (224)
                      +.|+|-|-+...-           ..++.++.+.++..+.++-+-.-|.++-       +.+..   +.-  -.|+|=. 
T Consensus        85 ~~GAdeid~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~~lkvIiE~~~~~~~~~~~~~~~~i~~a~ria~e~GaD~vKt-  163 (231)
T pfam01791        85 ALGADEVDMVVNIGADGSEDEEQVLAEIAAVKEACHGEGLKVILEAYLRGEEIKDKVDPHLVAKATRVGAEAGADFVKT-  163 (231)
T ss_pred             HCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHCCCEEEE-
T ss_conf             8799889999724657895599999999999986310487089998515721003268999999999999959998981-


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-------HHHHHHHHHCCCCE--EEECHHHHC
Q ss_conf             8306776533220135778998654313865269815899-------88999999679989--997426637
Q gi|254780975|r  140 TVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-------SRNIKSLVQAGADL--LVVGSSFFN  202 (224)
Q Consensus       140 ~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-------~~~i~~l~~~Gad~--~V~Gsaif~  202 (224)
                        ..||+.   ...+.+.++-+++......+.+-+-||++       .+.+..+.++||++  ...|..||.
T Consensus       164 --stg~~~---~gat~~~v~~~~~~~~~~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGA~~~G~s~Gr~i~q  230 (231)
T pfam01791       164 --STGFGE---RGATEEDVQIFKEVVGGAPPGVKASGGIKEKDFLRTVEDAIALIEAGADRIGVSAGRAIWQ  230 (231)
T ss_pred             --CCCCCC---CCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             --578788---8778889999999856878748993386864378999999999986998120999899876


No 328
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis.  Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent.   The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=84.11  E-value=3.5  Score=21.44  Aligned_cols=121  Identities=19%  Similarity=0.305  Sum_probs=73.6

Q ss_pred             CCCCCCEEEEECCC-----------CC---------------CHHHHHHHHHHC-C--CEEEEEEECCC------CHHHH
Q ss_conf             04776079997066-----------42---------------158999867764-9--82599852333------44789
Q gi|254780975|r   82 ADAGCDIITFHPES-----------SP---------------HIRRSLRTIHAM-G--KKTGVAINPET------PVAIL  126 (224)
Q Consensus        82 ~~~g~d~i~~H~E~-----------~~---------------~~~~~i~~i~~~-g--~k~Giai~p~T------~~~~i  126 (224)
                      .++|.|-|-+|.-+           ++               -+.++++.+|+. |  .-+|+=+++..      .++..
T Consensus       164 ~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~~vg~d~~vgvRis~~d~~~~g~~~~e~  243 (336)
T cd02932         164 VEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDS  243 (336)
T ss_pred             HHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHH
T ss_conf             98399999863137479998369411677786799789998899999999999839988706896452357899899999


Q ss_pred             ---HHHHHH--CCEEEEEEE--ECCC---CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCC-CCEE
Q ss_conf             ---988620--140289983--0677---653322013577899865431386526981589-988999999679-9899
Q gi|254780975|r  127 ---EDVIDE--IDMILIMTV--NPGF---GGQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAG-ADLL  194 (224)
Q Consensus       127 ---~~~l~~--~D~vliM~V--~PG~---~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~G-ad~~  194 (224)
                         .+.|..  +|++.+-+-  .+..   .+..|.   ++-.+.+|+   ..++.+.+-||+ +.+.+.++++.| +|.+
T Consensus       244 ~~~a~~l~~~gvd~i~vs~G~~~~~~~~~~~~~~~---~~~a~~ik~---~~~ipvi~~G~i~~p~~ae~~l~~G~~DlV  317 (336)
T cd02932         244 VELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQ---VPFAERIRQ---EAGIPVIAVGLITDPEQAEAILESGRADLV  317 (336)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC---HHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHCCCCEEH
T ss_conf             99999999759978995589877666677786426---799999998---789839997998999999999987994006


Q ss_pred             EECHHHHCCCCHHH
Q ss_conf             97426637899899
Q gi|254780975|r  195 VVGSSFFNQKGEIS  208 (224)
Q Consensus       195 V~Gsaif~~~d~~~  208 (224)
                      ..|.++..+||...
T Consensus       318 ~~gR~~iadPdlp~  331 (336)
T cd02932         318 ALGRELLRNPYWPL  331 (336)
T ss_pred             HHHHHHHHCCCHHH
T ss_conf             86799997933999


No 329
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=83.81  E-value=3.4  Score=21.52  Aligned_cols=198  Identities=14%  Similarity=0.104  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECC--EECCCCCCCHHHHHHHHHC-CCCEEEEEEEEE-----------EC--------
Q ss_conf             9999999999965998999973426--3458434178999986412-564168567885-----------12--------
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDG--CFVPNISFGADVIRSLRSY-SDSVFDCHLMIS-----------SI--------   74 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg--~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~-----------~P--------   74 (224)
                      +.+++.++.+.++|+|++-+=+ |.  .+.+++.|+.+.++.||+- .+.-+.+|=|+-           +|        
T Consensus        21 ~sw~e~~~~ak~~Gfd~iElsi-De~d~~~~rL~w~~~~~~~ir~~~~~~gi~i~s~cls~~~~~Pl~S~D~~~R~~~~e   99 (283)
T PRK13209         21 ECWLEKLRIAKTAGFDFVEMSV-DETDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQGLE   99 (283)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf             9999999999985998799842-685310035899999999999999981998603305455579999979999999999


Q ss_pred             --CHHHHHHCCCCCCEEEE-----ECCCC---------CCHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHCC
Q ss_conf             --03367640477607999-----70664---------21589998677649825998523334----478998862014
Q gi|254780975|r   75 --DSHINIIADAGCDIITF-----HPESS---------PHIRRSLRTIHAMGKKTGVAINPETP----VAILEDVIDEID  134 (224)
Q Consensus        75 --~~~i~~~~~~g~d~i~~-----H~E~~---------~~~~~~i~~i~~~g~k~Giai~p~T~----~~~i~~~l~~~D  134 (224)
                        .+.|+...+.|+..|.+     ++|..         +.+.+...+..+.|+..++=.- .|+    ++....+++.++
T Consensus       100 ~~~kaI~lA~~LGi~~I~lag~dv~~~~~~~e~~~~f~e~L~~~~~~A~~~gV~L~iE~~-~~~f~~t~~~~~~~i~~v~  178 (283)
T PRK13209        100 IMRKAIQLAQDLGIRVIQLAGYDVYYEEANNETRRRFIDGLKESVEMASRYSVTLAFEIM-DTPFMGSISKALGYAHYLN  178 (283)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC-CHHHHCCHHHHHHHHHHCC
T ss_conf             999999999980999899688766788785999999999999999999985998999425-5343215999999999669


Q ss_pred             EEEEE-EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE---------EE-EECCCCH-HHHHHHHHCCCCE-EEECHHHH
Q ss_conf             02899-83067765332201357789986543138652---------69-8158998-8999999679989-99742663
Q gi|254780975|r  135 MILIM-TVNPGFGGQQLIESTIPKIRQAKALIGKRSIS---------LE-VDGGVTS-RNIKSLVQAGADL-LVVGSSFF  201 (224)
Q Consensus       135 ~vliM-~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~---------I~-vDGGvn~-~~i~~l~~~Gad~-~V~Gsaif  201 (224)
                      .-.+. ..++|.... +.....+-++..+..+-+-.++         +- =.|.|+. +-+..|.+.|-+. ++.--.==
T Consensus       179 sP~l~v~~D~gn~~~-~~~d~~~~i~~~~~~I~~vH~kD~~~g~~~~vp~G~G~vdf~~vf~aLk~~gY~G~~~iE~w~~  257 (283)
T PRK13209        179 SPWFQLYPDIGNLSA-WDNDVQMELQAGIGHIVAFHVKDTKPGVFKNVPFGEGVVDFERAFKTLKQSGYCGPYLIEMWSE  257 (283)
T ss_pred             CCCEEEEECHHHHHH-CCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             972899944577987-5699999999724456898531477997675789888508899999999979976289998418


Q ss_pred             CCCCHHHHHHHHHHHH
Q ss_conf             7899899999999999
Q gi|254780975|r  202 NQKGEISYAKRLNDLK  217 (224)
Q Consensus       202 ~~~d~~~~~~~l~~l~  217 (224)
                      .++|+.+.++.-++..
T Consensus       258 ~~~~~~~~i~~a~~f~  273 (283)
T PRK13209        258 TAEDPAAEVAKARDFV  273 (283)
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             9957899999999999


No 330
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=83.56  E-value=2.5  Score=22.44  Aligned_cols=181  Identities=14%  Similarity=0.189  Sum_probs=105.7

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCC---CCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf             7063258899999999999659989999734263458434---1789999864125641685678851203367640477
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNIS---FGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAG   85 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~---~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g   85 (224)
                      |.+=+.|.--+..-++..++.+..- =+.+-.|.+ ..++   +....++.+.+....|+-.||==-.-...+.+..++|
T Consensus        21 pAfN~~nlE~~~AileaA~e~~sPv-Iiq~S~g~~-~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~G   98 (286)
T COG0191          21 PAFNINNLETLQAILEAAEEEKSPV-IIQFSEGAA-KYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAG   98 (286)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCE-EEEECCCHH-HHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCC
T ss_conf             5663368999999999999858998-999461188-77052889999999999977998899777899999999997568


Q ss_pred             CCEEEEECCCC---CC---HHHHHHHHHHCCCEEEEEE----E------------CCCCHHHHHHHHHH--CCEEEEEEE
Q ss_conf             60799970664---21---5899986776498259985----2------------33344789988620--140289983
Q gi|254780975|r   86 CDIITFHPESS---PH---IRRSLRTIHAMGKKTGVAI----N------------PETPVAILEDVIDE--IDMILIMTV  141 (224)
Q Consensus        86 ~d~i~~H~E~~---~~---~~~~i~~i~~~g~k~Giai----~------------p~T~~~~i~~~l~~--~D~vliM~V  141 (224)
                      -..+-+-.-..   ++   -.+.+++++..|+.+-.=|    +            ..|+++.-..+.+.  +|.+=+   
T Consensus        99 FsSvMiDgS~~p~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~---  175 (286)
T COG0191          99 FSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAA---  175 (286)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCEEEE---
T ss_conf             82587538757788899999999999998298189985133575677535666655079999999986128665611---


Q ss_pred             ECCCC------CCC-CCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf             06776------533-220135778998654313865269815--899889999996799899974266
Q gi|254780975|r  142 NPGFG------GQQ-LIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSF  200 (224)
Q Consensus       142 ~PG~~------Gq~-f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsai  200 (224)
                      --|..      |.+ +.+..+.+|++.-.      +++-.-|  |+..+.+++.++.|+.-+-..|-+
T Consensus       176 aiGn~HG~Yk~~~p~L~f~~L~~i~~~~~------~PlVlHGgSGip~eeI~~aI~~GV~KvNi~Td~  237 (286)
T COG0191         176 AIGNVHGVYKPGNPKLDFDRLKEIQEAVS------LPLVLHGGSGIPDEEIREAIKLGVAKVNIDTDL  237 (286)
T ss_pred             ECCCCCCCCCCCCCCCCHHHHHHHHHHHC------CCEEEECCCCCCHHHHHHHHHHCCEEEEECCHH
T ss_conf             00356667889999889799999999858------987976799999999999997295588547277


No 331
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=83.38  E-value=3.8  Score=21.25  Aligned_cols=153  Identities=20%  Similarity=0.285  Sum_probs=79.1

Q ss_pred             CHHHHCCCH-HHHHHHHHHHHHCCCCEEEEEEEC-CEECCCCCCCHH----HHHHHHHC-----CCCEEEEEEEEEECCH
Q ss_conf             170632588-999999999996599899997342-634584341789----99986412-----5641685678851203
Q gi|254780975|r    8 VPSILAADF-SRLGEEISNITKAGAKQIHFDVMD-GCFVPNISFGAD----VIRSLRSY-----SDSVFDCHLMISSIDS   76 (224)
Q Consensus         8 spSil~~d~-~~l~~~i~~l~~~~~d~iHiDImD-g~fvpn~~~~~~----~i~~i~~~-----t~~~~dvHLMv~~P~~   76 (224)
                      +..-++.|. .-+.++++.+.++|+.++++|=-- +...|... +++    .+..++..     .+..+..|+.-.+...
T Consensus       148 ~~~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~d~~i~~HiCy~e~~~  226 (330)
T COG0620         148 SREELAKDIALALRDEVKDLEDAGIKIIQIDEPALREGLPLRR-DDDYLEWAVEAINLAAAGVGADTQIHLHICYSEFND  226 (330)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf             9999999999999999999997599299626666643775446-647899999999999853788838999986774554


Q ss_pred             HHHHHCCCCCCEEEEECCCC-CCHHHHHHHHHHCCCEEEEEE-E---CCCC-HHHHHHH----HHHCCEEEEEEEEC--C
Q ss_conf             36764047760799970664-215899986776498259985-2---3334-4789988----62014028998306--7
Q gi|254780975|r   77 HINIIADAGCDIITFHPESS-PHIRRSLRTIHAMGKKTGVAI-N---PETP-VAILEDV----IDEIDMILIMTVNP--G  144 (224)
Q Consensus        77 ~i~~~~~~g~d~i~~H~E~~-~~~~~~i~~i~~~g~k~Giai-~---p~T~-~~~i~~~----l~~~D~vliM~V~P--G  144 (224)
                      ..+.+....+|.+.+..-.. ....+.+...+ .+..+|+.+ +   |.-+ .+.+...    +..+. .-..-|+|  |
T Consensus       227 ~~~~i~~ld~dv~~~e~~~s~~~~~~~~~~~~-~~~~Ig~Gv~d~~~~~ve~~eei~~~i~k~~~~~~-~e~~~vnPDCG  304 (330)
T COG0620         227 IPDAIEALDADVIDIETSRSRMELLEVLEEVK-YDKEIGLGVVDIHSPKVESVEEIAARIRKALERVP-PERLYVNPDCG  304 (330)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCHHHHHHHHCC-CCCEEECCEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCEEECCCCC
T ss_conf             67788644760785320345512678987405-67724514686578887988999999999997387-00099779866


Q ss_pred             CCCCCCCCHHHHHHHHHHHH
Q ss_conf             76533220135778998654
Q gi|254780975|r  145 FGGQQLIESTIPKIRQAKAL  164 (224)
Q Consensus       145 ~~Gq~f~~~~l~kI~~l~~~  164 (224)
                      +...+ .+.+..|++-+.+.
T Consensus       305 l~~~~-~~~a~~kL~nmv~a  323 (330)
T COG0620         305 LKTLP-REIAEAKLENMVKA  323 (330)
T ss_pred             CCCCC-HHHHHHHHHHHHHH
T ss_conf             55574-79999999999999


No 332
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=82.92  E-value=4  Score=21.14  Aligned_cols=124  Identities=19%  Similarity=0.311  Sum_probs=83.0

Q ss_pred             CCCEEEEECCC-----CCCHHHHHHHHHHCCCEEEEEEECCCCHH-HHHHHHHHCCEEEEEEE-ECCCCCCCCCC-HHHH
Q ss_conf             76079997066-----42158999867764982599852333447-89988620140289983-06776533220-1357
Q gi|254780975|r   85 GCDIITFHPES-----SPHIRRSLRTIHAMGKKTGVAINPETPVA-ILEDVIDEIDMILIMTV-NPGFGGQQLIE-STIP  156 (224)
Q Consensus        85 g~d~i~~H~E~-----~~~~~~~i~~i~~~g~k~Giai~p~T~~~-~i~~~l~~~D~vliM~V-~PG~~Gq~f~~-~~l~  156 (224)
                      +.++|-+..=.     .+|+.++++..... ++-|...-|+|.-+ .+.+-|.++--.-+|-- -|=-+||.... ..+.
T Consensus        97 ~t~wiKlEVi~d~~tLlPD~~etl~Aae~L-v~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~  175 (262)
T COG2022          97 GTNWIKLEVIGDEKTLLPDPIETLKAAEQL-VKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLE  175 (262)
T ss_pred             CCCEEEEEEECCCCCCCCCHHHHHHHHHHH-HHCCCEEEECCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHH
T ss_conf             698489999368765488757899999999-8679888503688789999998649668633566566786757889999


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf             78998654313865269815899-889999996799899974266378998999999999
Q gi|254780975|r  157 KIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND  215 (224)
Q Consensus       157 kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~  215 (224)
                      -      ++.+.++.+.||-||- ...+...-+.|+|-+-+-++|-...||...++.+.-
T Consensus       176 i------iie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~  229 (262)
T COG2022         176 I------IIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFAL  229 (262)
T ss_pred             H------HHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEHHHHHHCCCCHHHHHHHHHH
T ss_conf             9------99738998898679897668899986055432325676603786999999999


No 333
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=82.88  E-value=4  Score=21.13  Aligned_cols=150  Identities=17%  Similarity=0.352  Sum_probs=82.5

Q ss_pred             CCHHHHHHHH-HC---CCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHH-HHHHCCC--EEEEEEECC-
Q ss_conf             1789999864-12---56416856788512033676404776079997066421589998-6776498--259985233-
Q gi|254780975|r   49 FGADVIRSLR-SY---SDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLR-TIHAMGK--KTGVAINPE-  120 (224)
Q Consensus        49 ~~~~~i~~i~-~~---t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~-~i~~~g~--k~Giai~p~-  120 (224)
                      ||-..+.++. ++   ++..+.-|+.-.=..+-+..++.. +|+  +|.=-...+.+.++ ...+.+.  ++-|=+|.+ 
T Consensus        51 fGENrvQE~~~K~~~l~~~~i~wHfIG~LQsNKvk~i~~~-~~~--IhSvDs~kla~~l~~~~~~~~~~~~vlIQVNis~  127 (222)
T cd00635          51 FGENRVQEALDKAEELPDPDIEWHFIGHLQTNKVKYAVRL-FDL--IHSVDSLKLAEELNKRAEKEGRVLDVLVQVNIGG  127 (222)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCC-CCE--EEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf             3677089999868754888825999667623669987500-458--8877889999999999997299971899981588


Q ss_pred             ------CCHHHHHHHHH------HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC-CEE-EEECCCCHHHHHHH
Q ss_conf             ------34478998862------01402899830677653322013577899865431386-526-98158998899999
Q gi|254780975|r  121 ------TPVAILEDVID------EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRS-ISL-EVDGGVTSRNIKSL  186 (224)
Q Consensus       121 ------T~~~~i~~~l~------~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~-~~I-~vDGGvn~~~i~~l  186 (224)
                            .+++.+..++.      .+...-+||+-|--.-..-....+.+++++++-+.... ..+ +.==|.+ ...+..
T Consensus       128 e~~K~G~~~~e~~~~~~~~~~~~~l~~~GLM~i~p~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~~LSMGMS-~Dy~~A  206 (222)
T cd00635         128 EESKSGVAPEELEELLEEIAALPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNLKELSMGMS-GDFEIA  206 (222)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCH-HHHHHH
T ss_conf             7555688999999999999966899751036536999997999999999999999987645999398898141-459999


Q ss_pred             HHCCCCEEEECHHHHC
Q ss_conf             9679989997426637
Q gi|254780975|r  187 VQAGADLLVVGSSFFN  202 (224)
Q Consensus       187 ~~~Gad~~V~Gsaif~  202 (224)
                      +++|++.+=+||+||+
T Consensus       207 I~~GST~VRIGs~iFG  222 (222)
T cd00635         207 IEEGATLVRIGTAIFG  222 (222)
T ss_pred             HHCCCCEEEECCHHCC
T ss_conf             9879997981632109


No 334
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=82.51  E-value=4.1  Score=21.04  Aligned_cols=177  Identities=15%  Similarity=0.200  Sum_probs=101.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEE
Q ss_conf             25889999999999965998999973426345843417899998641256416856788512033676404776079997
Q gi|254780975|r   13 AADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFH   92 (224)
Q Consensus        13 ~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H   92 (224)
                      +.|..++.+.+   ...|++++-+  .|=.+.-..+-+.+.++.+...-+..+|+-.  .+-+.+-..+.  -+.+..+-
T Consensus        35 s~dP~eia~~l---r~rgar~vYi--ADLdaI~g~g~n~d~i~~l~~~~~~ivD~Gv--~dL~s~~~~l~--~~~~~vv~  105 (229)
T COG1411          35 SDDPLEIAEAL---RERGARFVYI--ADLDAILGGGDNADTIRELSSLEKVIVDVGV--RDLESHAHRLI--PAETAVVG  105 (229)
T ss_pred             CCCHHHHHHHH---HHCCCCEEEE--EEHHHHHCCCCCHHHHHHHHHHHHHEEECCC--CCCCCHHHHCC--CCCCEEEC
T ss_conf             99869999997---6544746886--1037886689748999998765435001133--33647888607--77643531


Q ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEEE--------CCCCHHHHHHHHHHCCE-EEEEEEECCCCC-CC-CCCHHHHHHHHH
Q ss_conf             06642158999867764982599852--------33344789988620140-289983067765-33-220135778998
Q gi|254780975|r   93 PESSPHIRRSLRTIHAMGKKTGVAIN--------PETPVAILEDVIDEIDM-ILIMTVNPGFGG-QQ-LIESTIPKIRQA  161 (224)
Q Consensus        93 ~E~~~~~~~~i~~i~~~g~k~Giai~--------p~T~~~~i~~~l~~~D~-vliM~V~PG~~G-q~-f~~~~l~kI~~l  161 (224)
                      .|+.++.+    .-++.-+-+++-++        ++..++.++.+...-|. ++++-+  |--| |. |..+.+.|+.++
T Consensus       106 TEt~e~~e----~~e~~r~vvslD~k~~~Ll~~~~ed~le~Vk~l~~~~~~~lIvLDi--~aVGt~~G~~~E~l~~~~~~  179 (229)
T COG1411         106 TETLEDTE----EDEEGRIVVSLDVKGGELLGPWLEDFLETVKDLNYRRDPGLIVLDI--GAVGTKSGPDYELLTKVLEL  179 (229)
T ss_pred             CCHHHHHH----HHHCCCEEEEEECCCCEECCCCCHHHHHHHHHHHCCCCCCEEEEEC--CCCCCCCCCCHHHHHHHHHH
T ss_conf             12033556----6330666999964788423777104899999875257888499975--54334669999999999873


Q ss_pred             HHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHH
Q ss_conf             654313865269815899-8899999967998999742663789989999
Q gi|254780975|r  162 KALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQKGEISYA  210 (224)
Q Consensus       162 ~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~  210 (224)
                      .+      -+..+-|||. .|....+...|++-+.+|+|+++...|.+..
T Consensus       180 s~------~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~~  223 (229)
T COG1411         180 SE------HPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEVE  223 (229)
T ss_pred             CC------CCEEECCCCCCHHHHHHHHCCCCCEEEEHHHHHCCCCCHHHH
T ss_conf             13------753444875857778998617985465433565276738998


No 335
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=81.85  E-value=3.4  Score=21.57  Aligned_cols=16  Identities=13%  Similarity=0.304  Sum_probs=9.8

Q ss_pred             HHHHHHCCCCCCEEEE
Q ss_conf             3367640477607999
Q gi|254780975|r   76 SHINIIADAGCDIITF   91 (224)
Q Consensus        76 ~~i~~~~~~g~d~i~~   91 (224)
                      .|+..-+++|||.|.+
T Consensus       181 ~yl~~Qi~aGAd~iqI  196 (335)
T cd00717         181 EYLKAQIEAGAQAVQI  196 (335)
T ss_pred             HHHHHHHHHCCCEEEE
T ss_conf             9999999819987885


No 336
>PRK06801 hypothetical protein; Provisional
Probab=81.70  E-value=4.4  Score=20.85  Aligned_cols=185  Identities=16%  Similarity=0.180  Sum_probs=108.6

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf             70632588999999999996599899997342634584341--7899998641256416856788512033676404776
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC   86 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~   86 (224)
                      |++=+.|+..+.--++..++.+..-+ +-+-.+.+ +..++  =...++...+..+.|+-+||==-.-...+....++|-
T Consensus        21 ~AfNv~n~e~~~avi~AAee~~sPvI-lq~s~~~~-~~~~~~~~~~~~~~~a~~~~VPV~lHLDHg~~~e~i~~ai~~Gf   98 (286)
T PRK06801         21 GAFNVLDSHFLRALFAAAKQERSPFI-INIAEVHF-KYISLESLVEAVKFEAAHHDIPVVLNLDHGLHFEAVVRALRLGF   98 (286)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCEE-EECCHHHH-HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99888999999999999999787989-98067577-56699999999999998779989998999999999999998299


Q ss_pred             CEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEE-------------EECCCCHHHHHHHHHH--CCEEEEEEE
Q ss_conf             07999706642---1---589998677649825----998-------------5233344789988620--140289983
Q gi|254780975|r   87 DIITFHPESSP---H---IRRSLRTIHAMGKKT----GVA-------------INPETPVAILEDVIDE--IDMILIMTV  141 (224)
Q Consensus        87 d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Gia-------------i~p~T~~~~i~~~l~~--~D~vliM~V  141 (224)
                      +.|-+-.-..+   +   -.++.++++..|+.+    |-.             -...|.++....+.+.  +|.+   .|
T Consensus        99 ~SVM~DgS~l~~eeNi~~Tk~vve~ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~~T~peea~~Fv~~TgvD~L---Av  175 (286)
T PRK06801         99 SSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSNLFTDPAIARDFVDRTGIDAL---AV  175 (286)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE---EE
T ss_conf             879974998999999999999999998849859999631057667765576530026899999999998699899---75


Q ss_pred             ECCCCCCCCCC---HHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             06776533220---135778998654313865269815--8998899999967998999742663
Q gi|254780975|r  142 NPGFGGQQLIE---STIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       142 ~PG~~Gq~f~~---~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif  201 (224)
                      -.|..-..+..   =-+++++++++.   .++++-.-|  |+..+.++++++.|+.-+-.|+.+.
T Consensus       176 aiGn~HG~yk~~p~L~~~~L~~I~~~---~~vPLVLHGgSGi~~e~i~~ai~~Gv~KiNi~T~l~  237 (286)
T PRK06801        176 AIGNAHGKYKGEPKLDFARLAAIHQQ---TGLPLVLHGGSGISDTDFRRAISLGIHKINFYTGMS  237 (286)
T ss_pred             ECCCCCCCCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHH
T ss_conf             22545567689886799999999985---299989779999999999999977976998286899


No 337
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=81.31  E-value=4.5  Score=20.76  Aligned_cols=185  Identities=15%  Similarity=0.197  Sum_probs=116.4

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf             70632588999999999996599899997342634584341--7899998641256416856788512033676404776
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC   86 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~   86 (224)
                      |+.=+.|+..++--++..++.+..- =+.+-.+.. ...++  -...++.+.+..+.|+-+||==-.....+.+..++|.
T Consensus        19 ~afNv~~~e~~~avi~AAee~~sPv-Ilq~s~~~~-~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~~~~e~~~~ai~~Gf   96 (283)
T pfam01116        19 PAFNVNNLETINAVLEAAEEANSPV-IIQVSPGAA-KYAGAEALAAMVRAAAEKYSVPVALHLDHGASFEGILEAIEAGF   96 (283)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCE-EEECCCCHH-HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf             9876798999999999999969999-999684467-55899999999999999779989996677799999999998199


Q ss_pred             CEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEEE------E------CCCCHHHHHHHHHH--CCEEEEEEEE
Q ss_conf             07999706642---1---589998677649825----9985------2------33344789988620--1402899830
Q gi|254780975|r   87 DIITFHPESSP---H---IRRSLRTIHAMGKKT----GVAI------N------PETPVAILEDVIDE--IDMILIMTVN  142 (224)
Q Consensus        87 d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Giai------~------p~T~~~~i~~~l~~--~D~vliM~V~  142 (224)
                      +.|-+-.-..+   +   -.++.++++..|+-+    |-.=      .      ..|.++....+++.  +|.   +.|-
T Consensus        97 tSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~---LAva  173 (283)
T pfam01116        97 SSVMIDGSHLPFEENIAITKEVVEYAHARGVSVEAELGRIGGEEDGVDNSEDEALYTDPEEAKEFVERTGVDS---LAVA  173 (283)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE---EEEE
T ss_conf             8698638979999999999999999987398489975003675667677763222589999999999869887---8764


Q ss_pred             CCCCCCCCC---C-HHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             677653322---0-135778998654313865269815--8998899999967998999742663
Q gi|254780975|r  143 PGFGGQQLI---E-STIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       143 PG~~Gq~f~---~-~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif  201 (224)
                      .|..-..+-   | =-+++++++++..   ++++-.-|  |+..+.++++.+.|+.-+-.|+.+.
T Consensus       174 iG~~HG~yk~~~p~L~~~~L~~I~~~~---~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~  235 (283)
T pfam01116       174 IGNVHGVYKPLEPKLDFDRLKEIQAAV---DVPLVLHGGSGVPDEEIRKAIKLGVAKINIDTDLQ  235 (283)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHH
T ss_conf             365344468999866999999999873---99878658999999999999983966998575999


No 338
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=81.14  E-value=1.7  Score=23.47  Aligned_cols=118  Identities=19%  Similarity=0.258  Sum_probs=64.4

Q ss_pred             EEECCHHHHHHCC-CCCCEEEEECCCCCC-------------HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC--C
Q ss_conf             8512033676404-776079997066421-------------58999867764982599852333447899886201--4
Q gi|254780975|r   71 ISSIDSHINIIAD-AGCDIITFHPESSPH-------------IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEI--D  134 (224)
Q Consensus        71 v~~P~~~i~~~~~-~g~d~i~~H~E~~~~-------------~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~--D  134 (224)
                      .++|-.|..++++ .|+|+||+|.=++..             ++++++.. +--+-+|=+=||..+.+.+++-.+-+  +
T Consensus       149 medP~eWArk~Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEdvLqAV-dvPiiiGGSGnpeKDpeVlekaAEvaEGe  227 (403)
T COG2069         149 MEDPGEWARKCVKKFGADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAV-DVPIIIGGSGNPEKDPEVLEKAAEVAEGE  227 (403)
T ss_pred             HHCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             52988999999998487659999613786556779899999999999754-86889668999764979999998761576


Q ss_pred             EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCHHHHHHHHHCCC--CEEEEC
Q ss_conf             0289983067765332201357789986543138652-69815899889999996799--899974
Q gi|254780975|r  135 MILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS-LEVDGGVTSRNIKSLVQAGA--DLLVVG  197 (224)
Q Consensus       135 ~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~-I~vDGGvn~~~i~~l~~~Ga--d~~V~G  197 (224)
                      ++|+-|.+-.-        -++||.+...-+++.-+. -++|=..-.+-=+++.+.|.  |.+|.-
T Consensus       228 RclLaSanldl--------Dy~~ia~AA~ky~H~VLswt~~D~N~qk~LNrkllk~gl~r~~IVMD  285 (403)
T COG2069         228 RCLLASANLDL--------DYERIAEAALKYDHVVLSWTQMDVNMQKTLNRKLLKRGLPRDRIVMD  285 (403)
T ss_pred             EEEEECCCCCC--------CHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHEEEC
T ss_conf             47751155566--------79999999986495388862258278899999999746984336116


No 339
>TIGR00010 TIGR00010 hydrolase, TatD family; InterPro: IPR015991   Escherichia coli TatD (synonym MttC) has been shown experimentally to be a DNase . On the basis of operon structure, it was originally thought to be involved in the Sec-independent export of protein precursors bearing twin arginine signal peptides by the Tat system . This alternative membrane targeting and translocation system (Mtt), also called twin arginine translocase (Tat) (MttA1A2BC or TatABCD), has been shown to transport fully folded proteins to, or across, the membrane , . However, it was later determined that TatD is not required for this translocation process , . Furthermore, it was noted that no exact correlation exists between the ability of an organism to synthesise a TatD-like protein and whether that organism has a Tat protein transport pathway . Also, with the exception of Escherichia coli , the genetic linkage between TatD and other Tat genes (operon structure) is not maintained.  Members of this group may be distantly related to a large 3D fold-based domain superfamily of metalloenzymes . The description of this fold superfamily was based on an analysis of conservation patterns in three dimensions, and the discovery that the same active-site architecture occurs in a large set of enzymes involved primarily in nucleotide metabolism. The group is thought to include urease, dihydroorotase, allantoinase, hydantoinase, AMP-, adenine- and cytosine- deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolase, formylmethanofuran dehydrogenase, and other enzymes ..
Probab=80.67  E-value=4.2  Score=20.97  Aligned_cols=130  Identities=13%  Similarity=0.111  Sum_probs=86.5

Q ss_pred             CCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEC-CHHHHHHCC-----CCCCEEEEECCCCCCHHHHH
Q ss_conf             998999973426345843417899998641256416856788512-033676404-----77607999706642158999
Q gi|254780975|r   30 GAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSI-DSHINIIAD-----AGCDIITFHPESSPHIRRSL  103 (224)
Q Consensus        30 ~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P-~~~i~~~~~-----~g~d~i~~H~E~~~~~~~~i  103 (224)
                      |.||.|-+=-+|.=..+-.|..++  +|.+..++|+=||.  -+- ++.++.+.+     .......+|+=+..  .+.-
T Consensus       101 GLDY~~~~~~~e~~~Q~e~F~~q~--~lA~~~~~P~iiH~--RdA~~d~~~iL~~~y~~~~~~~~g~~HCftg~--~E~a  174 (269)
T TIGR00010       101 GLDYYKADEKKERRRQKEVFRAQL--QLAEELNLPVIIHA--RDAEEDVLDILREYYAEKAPKVGGVLHCFTGD--AELA  174 (269)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHH--HHHHHCCCCEEEEC--CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC--HHHH
T ss_conf             440430687521789999999999--99997199689978--84579999999999842787787579814888--8999


Q ss_pred             HHHHHCC---CEEEE----EEECCCCHHHHHHHHHHCCEEEEEEE------EC--CCCCCC-CCCHHHHHHHHHHHHHH
Q ss_conf             8677649---82599----85233344789988620140289983------06--776533-22013577899865431
Q gi|254780975|r  104 RTIHAMG---KKTGV----AINPETPVAILEDVIDEIDMILIMTV------NP--GFGGQQ-LIESTIPKIRQAKALIG  166 (224)
Q Consensus       104 ~~i~~~g---~k~Gi----ai~p~T~~~~i~~~l~~~D~vliM~V------~P--G~~Gq~-f~~~~l~kI~~l~~~~~  166 (224)
                      +++-+.|   .-+++    ++....++-.+-+++| +|.+|+=|=      .|  |..++| |...+.+.|.++|..-.
T Consensus       175 ~~~ld~gd~~~yiSisG~vTFknA~~l~~~v~~iP-~e~LL~ETDSPyLaP~P~RGK~N~P~~v~~v~~~iAeik~~~~  252 (269)
T TIGR00010       175 KKLLDLGDLLFYISISGIVTFKNAKSLREVVKKIP-LERLLVETDSPYLAPVPYRGKRNEPAFVRYVVEAIAEIKGIDL  252 (269)
T ss_pred             HHHHCCCCEEEEEECCCCEEEECCHHHHHHHHHCC-CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH
T ss_conf             99960698799997286022106267899997459-6432320167445788988985674059999999998838899


No 340
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=79.82  E-value=4.1  Score=21.04  Aligned_cols=51  Identities=22%  Similarity=0.365  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHCCC---CEEEEECCCCHHHHHHHHHCCC--CEEEECHHHHCCCC
Q ss_conf             577899865431386---5269815899889999996799--89997426637899
Q gi|254780975|r  155 IPKIRQAKALIGKRS---ISLEVDGGVTSRNIKSLVQAGA--DLLVVGSSFFNQKG  205 (224)
Q Consensus       155 l~kI~~l~~~~~~~~---~~I~vDGGvn~~~i~~l~~~Ga--d~~V~Gsaif~~~d  205 (224)
                      ..-.++.|+.++..+   .+|.+-||+++..|..+.+.|+  |.+=+|+.+....+
T Consensus       262 ~~Ls~~~R~~LD~~G~~~~kI~~S~~LdE~~I~~L~~~ga~iD~fGVGT~LvT~~~  317 (443)
T PRK12484        262 AELSKATRAILDTAGLEQVKIVASGGLDENRIAALLAAGAPIDGFGVGTRLGVSAD  317 (443)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCEECCCC
T ss_conf             99999999999867998867999699999999999987996358716763403899


No 341
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=79.74  E-value=5.1  Score=20.43  Aligned_cols=181  Identities=13%  Similarity=0.187  Sum_probs=107.5

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCC
Q ss_conf             0632588999999999996599899997342634584341--78999986412564168567885120336764047760
Q gi|254780975|r   10 SILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCD   87 (224)
Q Consensus        10 Sil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d   87 (224)
                      +.=+.|+..++--++..++.+..-+ +-+.-+.. ...++  -...++.+.+..+.|+-+||==-.-...+....++|-+
T Consensus        22 AfNv~~~e~~~Avi~AAee~~sPvI-lq~~~~~~-~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~~~~e~i~~ai~~Gft   99 (284)
T PRK09195         22 AFNIHNLETMQVVVETAAELHSPVI-IAGTPGTF-SYAGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVR   99 (284)
T ss_pred             EEEECCHHHHHHHHHHHHHHCCCEE-EECCHHHH-HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             8777889999999999999599989-99885166-447989999999999987799889966987999999999974998


Q ss_pred             EEEEECCCCC---C---HHHHHHHHHHCCCEE----EEE--------E----ECCCCHHHHHHHHHH--CCEEEEEEEEC
Q ss_conf             7999706642---1---589998677649825----998--------5----233344789988620--14028998306
Q gi|254780975|r   88 IITFHPESSP---H---IRRSLRTIHAMGKKT----GVA--------I----NPETPVAILEDVIDE--IDMILIMTVNP  143 (224)
Q Consensus        88 ~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Gia--------i----~p~T~~~~i~~~l~~--~D~vliM~V~P  143 (224)
                      .|-+-.-+.+   +   -.++.++++..|+.+    |-.        .    ...|.++....+.+.  +|.+   .|-.
T Consensus       100 SVM~DgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~L---Avai  176 (284)
T PRK09195        100 SVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEKDALYTDPAQAREFVEATGIDSL---AVAI  176 (284)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE---EEEE
T ss_conf             6886389899999999999999999872881899740015657787766632356899999999997599889---8650


Q ss_pred             CC-----CCCC-CCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             77-----6533-220135778998654313865269815--8998899999967998999742663
Q gi|254780975|r  144 GF-----GGQQ-LIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       144 G~-----~Gq~-f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif  201 (224)
                      |.     .|.+ ++   +++++++++.   .++++-.-|  |+..+.++++.+.|+.-+-.++.+.
T Consensus       177 Gt~HG~yk~~p~L~---~~~L~~I~~~---~~vPLVLHGgSG~~~e~i~~ai~~Gv~KiNi~T~l~  236 (284)
T PRK09195        177 GTAHGMYKSAPKLD---FDRLENIRQW---VNIPLVLHGASGLPTKDIQQTIKLGICKVNVATELK  236 (284)
T ss_pred             CCCCCCCCCCCCCC---HHHHHHHHHH---HCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHH
T ss_conf             65455558988459---9999999997---499989878999899999999984976998685899


No 342
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=79.59  E-value=5.2  Score=20.40  Aligned_cols=61  Identities=18%  Similarity=0.335  Sum_probs=45.1

Q ss_pred             CCCEEEEECCCCC-CHHHHHHHHHHCCCEEEEE-EECC--CCHHHHHHHHHHCCEEEEEEEECCCCCC
Q ss_conf             7607999706642-1589998677649825998-5233--3447899886201402899830677653
Q gi|254780975|r   85 GCDIITFHPESSP-HIRRSLRTIHAMGKKTGVA-INPE--TPVAILEDVIDEIDMILIMTVNPGFGGQ  148 (224)
Q Consensus        85 g~d~i~~H~E~~~-~~~~~i~~i~~~g~k~Gia-i~p~--T~~~~i~~~l~~~D~vliM~V~PG~~Gq  148 (224)
                      .+|++.+-+-++. ...+.++.+++.|.|+|+. +.--  -|.+.++.++...+.|++.=-|   .||
T Consensus       273 dAdi~IV~~GS~~~~~~eAvd~Lr~~G~kvg~l~ir~l~PfP~~~i~~~l~~~k~ViVvE~N---~GQ  337 (377)
T PRK08659        273 DAEVVVVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN---LGQ  337 (377)
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCC---CHH
T ss_conf             99899999685578999999999964986889997220699989999998569989998077---568


No 343
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720   Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria .    This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=79.21  E-value=4.1  Score=21.03  Aligned_cols=168  Identities=18%  Similarity=0.343  Sum_probs=110.3

Q ss_pred             CEEECHHHHCCCHHHHHHHHHHHHHCC--CCEEEEEEECCEECCC------CCC------CHHHHHHHHHCCCCEEEEEE
Q ss_conf             818817063258899999999999659--9899997342634584------341------78999986412564168567
Q gi|254780975|r    4 SIQIVPSILAADFSRLGEEISNITKAG--AKQIHFDVMDGCFVPN------ISF------GADVIRSLRSYSDSVFDCHL   69 (224)
Q Consensus         4 ~~~IspSil~~d~~~l~~~i~~l~~~~--~d~iHiDImDg~fvpn------~~~------~~~~i~~i~~~t~~~~dvHL   69 (224)
                      .++|.+|++=.+--++.+-.+.++++.  +|.+-+=|-    |||      ++|      ..+.++++|.-++.|+=+=|
T Consensus        93 dvr~I~svyG~~~EEfa~va~~~e~A~~y~~~~ELN~S----CPhvK~G~G~~iG~dP~l~~~vv~avK~~~d~Pv~aKL  168 (308)
T TIGR01037        93 DVRLIASVYGESEEEFAEVAEKLEDADPYVDAYELNVS----CPHVKGGGGIEIGQDPELSADVVKAVKDKVDVPVFAKL  168 (308)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEECCCC----CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             52899983188822589999987211344000010477----74434234655477877999999998300078657864


Q ss_pred             E--EEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCC
Q ss_conf             8--85120336764047760799970664215899986776498259985233344789988620140289983067765
Q gi|254780975|r   70 M--ISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGG  147 (224)
Q Consensus        70 M--v~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~G  147 (224)
                      =  |.|=.+...-+.++|+|=++.        -+++        ++|.+|+-.|.    +|.|..-        .=|.||
T Consensus       169 sPNV~Di~eiA~a~eeaGaDGlt~--------INTl--------~PGMkIDI~~~----kPiLaNk--------~GGlSG  220 (308)
T TIGR01037       169 SPNVTDITEIAKAAEEAGADGLTL--------INTL--------RPGMKIDIKAK----KPILANK--------TGGLSG  220 (308)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEE--------EHHH--------HHHHHHHHHCC----CCCCEEC--------CCCCCC
T ss_conf             865668999988875327761640--------0120--------34677734207----8700004--------588507


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             33220135778998654313865269815899-8899999967998999742663789
Q gi|254780975|r  148 QQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       148 q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                      -.--|=.+.-|=++-+.++. .+.|.==|||+ +|.+-+..=|||.-+=+|||+|=++
T Consensus       221 PAIKPiA~r~VYdly~~~dd-riPIiGvGGi~~~eDA~Efl~AGAsAVQvGtAvyy~g  277 (308)
T TIGR01037       221 PAIKPIAVRMVYDLYKEVDD-RIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRG  277 (308)
T ss_pred             CCCCCEEEEEHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEEECCC
T ss_conf             50142212100004777378-2346863274558999999985220220002221177


No 344
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=79.03  E-value=5.4  Score=20.29  Aligned_cols=186  Identities=13%  Similarity=0.222  Sum_probs=115.4

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCC
Q ss_conf             70632588999999999996599899997342634584341--7899998641256416856788512033676404776
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGC   86 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~   86 (224)
                      |+.=+.|+..++--++..++.+..- =+-+--+.. ...++  =...++.+.+..+.|+-+||==-.....+....++|-
T Consensus        21 gaFNv~n~e~~~Avi~AAee~~sPv-Ilq~s~~~~-~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~~~~e~i~~ai~~Gf   98 (283)
T PRK07998         21 GAFNTTNLETTISILNAIERSGLPN-FIQIAPTNA-QLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGF   98 (283)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCE-EEECCHHHH-HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf             9878899999999999999978698-999775067-55599999999999999869989997588899999999997399


Q ss_pred             CEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEEE----------ECCCCHHHHHHHHHH--CCEEEEEEEE-C
Q ss_conf             07999706642---1---589998677649825----9985----------233344789988620--1402899830-6
Q gi|254780975|r   87 DIITFHPESSP---H---IRRSLRTIHAMGKKT----GVAI----------NPETPVAILEDVIDE--IDMILIMTVN-P  143 (224)
Q Consensus        87 d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Giai----------~p~T~~~~i~~~l~~--~D~vliM~V~-P  143 (224)
                      +.|-|-.-..+   +   -.++.++++..|+.+    |-.-          +..|.++....+...  +|.+=+=--+ =
T Consensus        99 tSVM~DgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~G~ed~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGt~H  178 (283)
T PRK07998         99 TSVMIDGAALPFEENIAFTQEAVDFCKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKTFVERTGCDMLAVSIGNVH  178 (283)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             88986099899999999999999999776997999853535754777775203899999999999868899964046645


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             776533220135778998654313865269815--8998899999967998999742663
Q gi|254780975|r  144 GFGGQQLIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       144 G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif  201 (224)
                      |+.+.+-+  -+++++++++.   .++++-.-|  |+..+.++++.+.|+.-+-.||.+.
T Consensus       179 G~~~~p~l--~~~~l~~I~~~---~~iPLVLHGgSGi~~e~i~~ai~~Gi~KiNi~Tel~  233 (283)
T PRK07998        179 GLDDIPRI--DIPLLKRIAEV---SPVPLVIHGGSGIPPDILRSFVNYRVAKVNIASDLR  233 (283)
T ss_pred             CCCCCCCC--CHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHH
T ss_conf             67878863--89999998864---798789869999999999999986986999586899


No 345
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=78.85  E-value=5.4  Score=20.26  Aligned_cols=174  Identities=17%  Similarity=0.288  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHCCCCEEEEE-EECCEECCCCCCCHH-------HHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEE
Q ss_conf             99999999996599899997-342634584341789-------9998641256416856788512033676404776079
Q gi|254780975|r   18 RLGEEISNITKAGAKQIHFD-VMDGCFVPNISFGAD-------VIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDII   89 (224)
Q Consensus        18 ~l~~~i~~l~~~~~d~iHiD-ImDg~fvpn~~~~~~-------~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i   89 (224)
                      .-.++...++++|+|-+=+- .-|--|-+  ..+|+       .++++.+.-.+|+-+-+.-++|..-+......|++.|
T Consensus        35 ~A~~dA~~leegG~DavivEN~gD~Pf~k--~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~vaA~~IA~a~gA~FI  112 (263)
T COG0434          35 RAVRDAAALEEGGVDAVIVENYGDAPFLK--DVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAVAALAIAYAVGADFI  112 (263)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCC--CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             99989999984897689971357887777--7974788999999999987507661032102662888999986079779


Q ss_pred             EE--ECCC--------CCCHHHHHHHHHHCCCEEEEE--E--ECCC-----CHHH-HHHHHH--HCCEEEEEEEECCCCC
Q ss_conf             99--7066--------421589998677649825998--5--2333-----4478-998862--0140289983067765
Q gi|254780975|r   90 TF--HPES--------SPHIRRSLRTIHAMGKKTGVA--I--NPET-----PVAI-LEDVID--EIDMILIMTVNPGFGG  147 (224)
Q Consensus        90 ~~--H~E~--------~~~~~~~i~~i~~~g~k~Gia--i--~p~T-----~~~~-i~~~l~--~~D~vliM~V~PG~~G  147 (224)
                      -+  +.++        ..+..+...+.+..+.++-+-  +  .-.+     +++. +..-+.  ..|.|.+-+-   -.|
T Consensus       113 RVN~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~---~TG  189 (263)
T COG0434         113 RVNVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGS---RTG  189 (263)
T ss_pred             EEEEEECEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEECC---CCC
T ss_conf             98734342763565014448899998986167737976111321532378688999999997048877999566---678


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             33220135778998654313865269815899889999996799899974266378
Q gi|254780975|r  148 QQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQ  203 (224)
Q Consensus       148 q~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~  203 (224)
                      .+-.   ++.++..++..   +...-|--|+|.+|+..+.+. +|-+++||++=+.
T Consensus       190 ~~~d---~~el~~a~~~~---~~pvlvGSGv~~eN~~~~l~~-adG~IvgT~lK~~  238 (263)
T COG0434         190 SPPD---LEELKLAKEAV---DTPVLVGSGVNPENIEELLKI-ADGVIVGTSLKKG  238 (263)
T ss_pred             CCCC---HHHHHHHHHCC---CCCEEEECCCCHHHHHHHHHH-CCCEEEEEEECCC
T ss_conf             9999---89999998626---987897368888899999987-2866997866038


No 346
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK):  Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors.  Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state.  PK exists as several different isozymes, depending on organism and tissue type.  In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung.  PK forms a homotetramer, with each subunit containing three domains.  The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=78.52  E-value=5.6  Score=20.19  Aligned_cols=152  Identities=11%  Similarity=0.106  Sum_probs=90.7

Q ss_pred             EEEEEEEEECCHHHHHHCCCCCCEEEEEC-CCCCCHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHHCCEEEE---
Q ss_conf             68567885120336764047760799970-66421589998677649825998523334--4789988620140289---
Q gi|254780975|r   65 FDCHLMISSIDSHINIIADAGCDIITFHP-ESSPHIRRSLRTIHAMGKKTGVAINPETP--VAILEDVIDEIDMILI---  138 (224)
Q Consensus        65 ~dvHLMv~~P~~~i~~~~~~g~d~i~~H~-E~~~~~~~~i~~i~~~g~k~Giai~p~T~--~~~i~~~l~~~D~vli---  138 (224)
                      ++..-+++.=...++...+.|+|+|.+-+ .+.+++.++-+.+++.|..+.|.-.-+|+  ++.+..++...|.|++   
T Consensus       167 ~~lp~lTekD~~di~~a~~~~vD~valSFVr~~~Dv~~lr~~l~~~g~~~~IiaKIE~~~al~nl~eIi~~sDgIMIARG  246 (480)
T cd00288         167 VDLPALSEKDKADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVARG  246 (480)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCHHHHHHHCCEEEEECC
T ss_conf             78667987789999868875999999888898999999999999748866699985277666479999985388999778


Q ss_pred             -EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-----CCCC--------HHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             -9830677653322013577899865431386526981-----5899--------8899999967998999742663789
Q gi|254780975|r  139 -MTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVD-----GGVT--------SRNIKSLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       139 -M~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vD-----GGvn--------~~~i~~l~~~Gad~~V~Gsaif~~~  204 (224)
                       ++++-|+.--+   ..=.+|-.   ...+.+-.+.+.     -=++        ...+...+--|+|.+.+..---..+
T Consensus       247 DLgvEi~~e~vp---~~Qk~Ii~---~c~~~gKPvIvATqmLeSMi~~p~PTRAEv~DVanAv~dG~DavMLs~ETa~G~  320 (480)
T cd00288         247 DLGVEIPAEEVF---LAQKMLIA---KCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGK  320 (480)
T ss_pred             CCCCCCCHHHHH---HHHHHHHH---HHHHCCCEEEEECCHHHHHHCCCCCCEEEHHHHHHHHHHCCCEEEECHHHCCCC
T ss_conf             655647988989---99999999---999839959996736887623899852102458889874586799753222787


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q ss_conf             989999999999997862
Q gi|254780975|r  205 GEISYAKRLNDLKKSALA  222 (224)
Q Consensus       205 d~~~~~~~l~~l~~~a~a  222 (224)
                      .|.++.+.+......++.
T Consensus       321 yPv~~V~~m~~I~~~aE~  338 (480)
T cd00288         321 YPVEAVKAMARICLEAEK  338 (480)
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             989999999999999973


No 347
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=77.85  E-value=5.8  Score=20.07  Aligned_cols=53  Identities=13%  Similarity=0.209  Sum_probs=23.1

Q ss_pred             CCHHHHHHHHHHHHHHCC--CCEEEEECC-C-CHHHHHHHH-HC-CCCEEEECHHHHCC
Q ss_conf             201357789986543138--652698158-9-988999999-67-99899974266378
Q gi|254780975|r  151 IESTIPKIRQAKALIGKR--SISLEVDGG-V-TSRNIKSLV-QA-GADLLVVGSSFFNQ  203 (224)
Q Consensus       151 ~~~~l~kI~~l~~~~~~~--~~~I~vDGG-v-n~~~i~~l~-~~-Gad~~V~Gsaif~~  203 (224)
                      .+++.+++.++.+.-.+-  ++-+-..|| | +.+.+..+. .. +++-|+.+|++=.-
T Consensus       194 l~~a~~~~~~i~~aa~~v~~diIvLchGGpI~~P~Da~~vl~~t~~~~Gf~GaSS~ERl  252 (268)
T pfam09370       194 LDDCVELINAIARAARSVNPDVIVLCHGGPIATPEDAQYVLDRTPGCHGFYGASSMERL  252 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCHHHHH
T ss_conf             99999999999999998599869995178889989999999739777667633036664


No 348
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719   Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria .    This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=77.74  E-value=5.9  Score=20.05  Aligned_cols=81  Identities=21%  Similarity=0.305  Sum_probs=57.7

Q ss_pred             EEEEEE---EC-CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHH-HHCCCCHHHH
Q ss_conf             289983---06-776533220135778998654313865269815899-88999999679989997426-6378998999
Q gi|254780975|r  136 ILIMTV---NP-GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSS-FFNQKGEISY  209 (224)
Q Consensus       136 vliM~V---~P-G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsa-if~~~d~~~~  209 (224)
                      |+=|.+   ++ |-||.++...+.+-||++.+....+ +.|.-=|||+ .+++.+=+++||.-+=+=|+ ||+.|...+.
T Consensus       266 v~g~k~~r~~~GGLSGkPL~~kS~eiirrL~~~~~gr-~piIgVGGI~~~~~A~EkI~AGASLlQ~YsgfIy~GP~l~k~  344 (370)
T TIGR01036       266 VTGPKNSREETGGLSGKPLQKKSTEIIRRLYKELKGR-LPIIGVGGISSAQNALEKIKAGASLLQIYSGFIYKGPPLVKE  344 (370)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-EEEEEECCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHH
T ss_conf             2563214356789887514477899999999996495-789962785747889999984712445642346677167999


Q ss_pred             -HHHHHHHH
Q ss_conf             -99999999
Q gi|254780975|r  210 -AKRLNDLK  217 (224)
Q Consensus       210 -~~~l~~l~  217 (224)
                       .+.|..+.
T Consensus       345 i~~~i~~lL  353 (370)
T TIGR01036       345 IVKEIEKLL  353 (370)
T ss_pred             HHHHHHHHH
T ss_conf             999999997


No 349
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=77.39  E-value=6  Score=19.99  Aligned_cols=50  Identities=16%  Similarity=0.448  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHCCCC---EEEEECCCCHHHHHHHHHCCCCEEEECH-H-HHCCCC
Q ss_conf             778998654313865---2698158998899999967998999742-6-637899
Q gi|254780975|r  156 PKIRQAKALIGKRSI---SLEVDGGVTSRNIKSLVQAGADLLVVGS-S-FFNQKG  205 (224)
Q Consensus       156 ~kI~~l~~~~~~~~~---~I~vDGGvn~~~i~~l~~~Gad~~V~Gs-a-if~~~d  205 (224)
                      +-++++|+..++.-+   -+..-||==.+...-....|...+|.-| + +|-.++
T Consensus       199 ~~~~~ir~~~p~~~~LiPG~GAQGg~~~~~~~~~~~~~~g~lvnsSR~I~~a~~~  253 (277)
T PRK00125        199 PELAAVRKIVGDMPLLIPGIGAQGGDAEATVRAGGAAGNGMIPNSSRAILYAGPG  253 (277)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCEEEECCHHHHHCCCC
T ss_conf             7789999867997598256303578999999864658884699858899825898


No 350
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=77.39  E-value=6  Score=19.99  Aligned_cols=100  Identities=17%  Similarity=0.258  Sum_probs=59.7

Q ss_pred             HHHCCCHH---HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEE--EEEEEEEECCHHHHHHCCC
Q ss_conf             06325889---999999999965998999973426345843417899998641256416--8567885120336764047
Q gi|254780975|r   10 SILAADFS---RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF--DCHLMISSIDSHINIIADA   84 (224)
Q Consensus        10 Sil~~d~~---~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~--dvHLMv~~P~~~i~~~~~~   84 (224)
                      |+...|..   .--+++.+|.++|++.+-+-+-|-.       ..+-++.|++.++.|+  |+|.=   + +..-.-.+.
T Consensus        32 SMt~t~T~Dv~at~~Qi~~L~~aGceiVRvavp~~~-------~a~al~~I~~~~~iPlvADIHF~---~-~lAl~a~~~  100 (367)
T PRK00366         32 SMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDME-------AAAALPEIKKQLPVPLVADIHFD---Y-RLALKAAEA  100 (367)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHH-------HHHHHHHHHHHCCCCEECCCCCC---H-HHHHHHHHH
T ss_conf             568997443899999999999849998998459999-------99969999984789703125414---8-999999986


Q ss_pred             CCCEEEEECCCC---CCHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             760799970664---215899986776498259985233
Q gi|254780975|r   85 GCDIITFHPESS---PHIRRSLRTIHAMGKKTGVAINPE  120 (224)
Q Consensus        85 g~d~i~~H~E~~---~~~~~~i~~i~~~g~k~Giai~p~  120 (224)
                      |+|.+-+-.-..   +....+++.++++|+-.-|..|-+
T Consensus       101 g~~kiRINPGNig~~e~~~~vv~~ak~~~ipIRIGvN~G  139 (367)
T PRK00366        101 GADALRINPGNIGRDERFKEVVEAAKDYGIPIRIGVNAG  139 (367)
T ss_pred             HHHHEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf             411131378756864889999999998499766446778


No 351
>pfam04551 GcpE GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Probab=77.25  E-value=6  Score=19.96  Aligned_cols=100  Identities=18%  Similarity=0.317  Sum_probs=61.8

Q ss_pred             HHHCC---CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEE--EEEEEEEECCHHHHHHCCC
Q ss_conf             06325---889999999999965998999973426345843417899998641256416--8567885120336764047
Q gi|254780975|r   10 SILAA---DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF--DCHLMISSIDSHINIIADA   84 (224)
Q Consensus        10 Sil~~---d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~--dvHLMv~~P~~~i~~~~~~   84 (224)
                      |+...   |...--+++.+|.++|++.+-+-+-|-.       ..+-++.|++.++.|+  |+|.   +|..-+. -.++
T Consensus        21 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~-------~a~al~~I~~~~~iPlVADIHF---~~~lAl~-a~~~   89 (345)
T pfam04551        21 SMTNTDTRDVEATVAQIKRLEEAGCDIVRVAVPDME-------AAEALKEIKKQSPIPLVADIHF---DYRLALE-AIEA   89 (345)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHH-------HHHHHHHHHHHCCCCCEEECCC---CHHHHHH-HHHH
T ss_conf             568998620899999999999859998998879999-------9984999998589971400424---8999999-9986


Q ss_pred             CCCEEEEECCCC---CCHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             760799970664---215899986776498259985233
Q gi|254780975|r   85 GCDIITFHPESS---PHIRRSLRTIHAMGKKTGVAINPE  120 (224)
Q Consensus        85 g~d~i~~H~E~~---~~~~~~i~~i~~~g~k~Giai~p~  120 (224)
                      |+|-+-+-.-..   +....+++.++++|+-.-|..|-+
T Consensus        90 g~~kiRINPGNig~~~~~~~vv~~ak~~~~pIRIGvN~G  128 (345)
T pfam04551        90 GVDKIRINPGNIGRREKVKEVVEAAKERGIPIRIGVNSG  128 (345)
T ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             220156799774867878999999998399789832677


No 352
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and  MoaA, an enzyme o
Probab=77.19  E-value=6.1  Score=19.95  Aligned_cols=98  Identities=11%  Similarity=0.171  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEC---CHHHHHHCCCCCCEEEEEC
Q ss_conf             9999999999965998999973426345843417899998641256416856788512---0336764047760799970
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSI---DSHINIIADAGCDIITFHP   93 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P---~~~i~~~~~~g~d~i~~H~   93 (224)
                      ..+.+.+......++..  +.+.+|.+..+..+ .+.++.+++.. ..+.+++.+...   ...++.+.++|...+.+..
T Consensus        31 ~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~l~~~~~~~-~~~~i~~~t~~~~~~~~~l~~l~~~g~~~~~i~l  106 (204)
T cd01335          31 EEILDIVLEAKERGVEV--VILTGGEPLLYPEL-AELLRRLKKEL-PGFEISIETNGTLLTEELLKELKELGLDGVGVSL  106 (204)
T ss_pred             HHHHHHHHHHHHCCCEE--EEEECCCCCCCCCC-CHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             99999999998759869--99724676666532-10135455306-8717999833654769998775403754222243


Q ss_pred             CCCCC---------------HHHHHHHHHHCCCEEEEEEE
Q ss_conf             66421---------------58999867764982599852
Q gi|254780975|r   94 ESSPH---------------IRRSLRTIHAMGKKTGVAIN  118 (224)
Q Consensus        94 E~~~~---------------~~~~i~~i~~~g~k~Giai~  118 (224)
                      |+.++               ..+.++.+++.|..++..+-
T Consensus       107 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i  146 (204)
T cd01335         107 DSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLL  146 (204)
T ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             5689999999848899759999999999867998999999


No 353
>KOG4201 consensus
Probab=76.47  E-value=6.3  Score=19.83  Aligned_cols=192  Identities=16%  Similarity=0.197  Sum_probs=113.1

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCC--EEEEEE---EEEECCHHHHHHCCC
Q ss_conf             063258899999999999659989999734263458434178999986412564--168567---885120336764047
Q gi|254780975|r   10 SILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDS--VFDCHL---MISSIDSHINIIADA   84 (224)
Q Consensus        10 Sil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~--~~dvHL---Mv~~P~~~i~~~~~~   84 (224)
                      .+++-|+..-+..+ ...++|+.-+.+ ..|-++   |.-+.+.+..+|+....  |--+-|   .+-+|.. |-.-...
T Consensus        85 G~ik~d~~~ae~A~-~Yak~GAs~iSV-LTe~k~---FkGsledL~~irk~~~~k~p~~~lL~KeFivd~~Q-I~~aR~~  158 (289)
T KOG4201          85 GIIKLDANAAEQAL-AYAKGGASCISV-LTEPKW---FKGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQ-IYEARLK  158 (289)
T ss_pred             CCCCCCCCHHHHHH-HHHHCCCEEEEE-ECCCHH---HCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHH-HHHHHHC
T ss_conf             86202557899999-998458554554-237045---30538789999997167688176767887357999-9999863


Q ss_pred             CCCEEEEECCCC--CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf             760799970664--215899986776498259985233344789988620140289983067765332201357789986
Q gi|254780975|r   85 GCDIITFHPESS--PHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK  162 (224)
Q Consensus        85 g~d~i~~H~E~~--~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~  162 (224)
                      |+|.+..-+-..  .++...++.++..|+.+-+-.|.....   ...+..  .+-+.+||-..- ..|.- -++.-+.+-
T Consensus       159 GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm---~ralei--GakvvGvNNRnL-~sFeV-DlstTskL~  231 (289)
T KOG4201         159 GADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEM---QRALEI--GAKVVGVNNRNL-HSFEV-DLSTTSKLL  231 (289)
T ss_pred             CCCEEEHHHHHCCHHHHHHHHHHHHHCCCCCEEEECCHHHH---HHHHHH--CCEEEEECCCCC-CEEEE-CHHHHHHHH
T ss_conf             88513118987074889999999887187500330659999---899973--757874347764-13665-102578898


Q ss_pred             HHHHCCCC-EEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Q ss_conf             54313865-269815899889999996799899974266378998999999999
Q gi|254780975|r  163 ALIGKRSI-SLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND  215 (224)
Q Consensus       163 ~~~~~~~~-~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~  215 (224)
                      +.++ +++ -+..-|=-+.+.+..+.++|+..+.+|-++.++.||..++..+..
T Consensus       232 E~i~-kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i~eL~~  284 (289)
T KOG4201         232 EGIP-KDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFIHELFG  284 (289)
T ss_pred             HHCC-CCEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHCCCHHHHHHHHHC
T ss_conf             5086-3269874157888788999987486189852777724588899999856


No 354
>TIGR01919 hisA-trpF bifunctional HisA/TrpF protein; InterPro: IPR010188   This entry represents a bifunctional protein possessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities . Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC Gram-positive). The enzyme is closely related to the monofunctional HisA proteins and in Actinobacteria, the classical monofunctional TrpF is generally absent.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0004640 phosphoribosylanthranilate isomerase activity, 0000105 histidine biosynthetic process, 0000162 tryptophan biosynthetic process, 0005737 cytoplasm.
Probab=75.79  E-value=6.6  Score=19.71  Aligned_cols=177  Identities=18%  Similarity=0.285  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEE-EECCHHHHHHCCCCCCEEEEECCCCC
Q ss_conf             99999999965998999973426345843417899998641256416856788-51203367640477607999706642
Q gi|254780975|r   19 LGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMI-SSIDSHINIIADAGCDIITFHPESSP   97 (224)
Q Consensus        19 l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv-~~P~~~i~~~~~~g~d~i~~H~E~~~   97 (224)
                      ++..++= .+.|+.|||+==.|--|  |-+=+.+.+.+|-..-+-.++|-|-= -.-..=++.-...|+.+|-+=.-+.+
T Consensus        35 ~eaA~~W-~~~GA~WiHlVDLDAAF--g~G~N~e~l~EiVg~LddrV~vELsGGiRDD~SL~~AL~tGa~RVNiGTAALE  111 (246)
T TIGR01919        35 LEAALKW-QEDGAEWIHLVDLDAAF--GRGSNHELLAEIVGKLDDRVDVELSGGIRDDESLEAALATGAARVNIGTAALE  111 (246)
T ss_pred             HHHHHHH-HHCCCCEEEEEEEHHHC--CCCCHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCEEECCHHCCC
T ss_conf             7898998-86365075335300013--78970889999986307878898506855678999999807734400101046


Q ss_pred             CHHHHHHHHHHCCCEE--EEEEEC------------CCCHHHHHHHHHHCC-----EEEEEEEE-CCCCCCCCCCHHHHH
Q ss_conf             1589998677649825--998523------------334478998862014-----02899830-677653322013577
Q gi|254780975|r   98 HIRRSLRTIHAMGKKT--GVAINP------------ETPVAILEDVIDEID-----MILIMTVN-PGFGGQQLIESTIPK  157 (224)
Q Consensus        98 ~~~~~i~~i~~~g~k~--Giai~p------------~T~~~~i~~~l~~~D-----~vliM~V~-PG~~Gq~f~~~~l~k  157 (224)
                      +|+.+-.-|+++|-++  ||.+..            .++=-.+...++.+|     +-.+-=|. -|.=+.|    -++-
T Consensus       112 ~P~W~A~vI~~yGd~vAVgl~V~~~DGeh~l~g~GW~~dGGDLwevl~~LDS~GCsRfVVTDv~KDG~lsGP----N~~L  187 (246)
T TIGR01919       112 NPEWIASVIKKYGDKVAVGLDVRLIDGEHRLRGRGWESDGGDLWEVLERLDSEGCSRFVVTDVAKDGTLSGP----NVEL  187 (246)
T ss_pred             CCHHHHHHHHHCCCEEEEEEEEEEECCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCC----CHHH
T ss_conf             823788998760776875457898738566604675578862899998743488540378501237866785----2899


Q ss_pred             HHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf             8998654313865269815899----88999999679989997426637899
Q gi|254780975|r  158 IRQAKALIGKRSISLEVDGGVT----SRNIKSLVQAGADLLVVGSSFFNQKG  205 (224)
Q Consensus       158 I~~l~~~~~~~~~~I~vDGGvn----~~~i~~l~~~Gad~~V~Gsaif~~~d  205 (224)
                      +++..+   +++-+|..-|||+    ...+.++.+.|+|..++|-++|...-
T Consensus       188 L~eVA~---~TDA~v~ASGGiS~LdDl~~i~~l~~~Gvds~I~GKaLY~~~F  236 (246)
T TIGR01919       188 LAEVAE---RTDAPVVASGGISKLDDLRAIAKLAEEGVDSAIVGKALYARKF  236 (246)
T ss_pred             HHHHHH---HCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHC
T ss_conf             999886---2288478717756188999999997558865762025553203


No 355
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=75.61  E-value=2.5  Score=22.45  Aligned_cols=182  Identities=15%  Similarity=0.273  Sum_probs=104.1

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCH----HHHHHHH-HCCCCEEEEEEEEEECCHHHHHHCC
Q ss_conf             7063258899999999999659989999734263458434178----9999864-1256416856788512033676404
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGA----DVIRSLR-SYSDSVFDCHLMISSIDSHINIIAD   83 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~----~~i~~i~-~~t~~~~dvHLMv~~P~~~i~~~~~   83 (224)
                      |+.=+.|+..+.--++..++.+..-| +-+-.|.. ..  +|.    ..++.+. ++++.|+-+||==-.-...+.+..+
T Consensus        20 ~AfNv~n~e~~~avi~AAee~~sPvI-lq~s~~~~-~~--~g~~~~~~~~~~~a~~~a~VPValHLDH~~~~e~~~~ai~   95 (307)
T PRK05835         20 GAFNFVNFEMLNAIFEAGNEENSPLF-IQASEGAI-KY--MGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVK   95 (307)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCEE-EEECHHHH-HH--CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf             98778999999999999999789989-99573377-66--7989999999999986699998998999999999999998


Q ss_pred             CCCCEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEE--------EE----CCCCHHHHHHHHHH--CCEEEEE
Q ss_conf             77607999706642---1---589998677649825----998--------52----33344789988620--1402899
Q gi|254780975|r   84 AGCDIITFHPESSP---H---IRRSLRTIHAMGKKT----GVA--------IN----PETPVAILEDVIDE--IDMILIM  139 (224)
Q Consensus        84 ~g~d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Gia--------i~----p~T~~~~i~~~l~~--~D~vliM  139 (224)
                      +|-+.|-+-.-..+   +   -.++.+++++.|+-+    |-.        ..    ..|.++..+.+...  +|.+=+ 
T Consensus        96 ~GFsSVM~DgS~l~~eeNI~~tk~vve~ah~~gv~VEaElG~i~G~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv-  174 (307)
T PRK05835         96 AGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAP-  174 (307)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHH-
T ss_conf             1998799519989999999999999999987098699974312566777676653223479999999998747079999-


Q ss_pred             EE-E-CC---CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-----------------------CCCHHHHHHHHHCCC
Q ss_conf             83-0-67---76533220135778998654313865269815-----------------------899889999996799
Q gi|254780975|r  140 TV-N-PG---FGGQQLIESTIPKIRQAKALIGKRSISLEVDG-----------------------GVTSRNIKSLVQAGA  191 (224)
Q Consensus       140 ~V-~-PG---~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG-----------------------Gvn~~~i~~l~~~Ga  191 (224)
                      ++ + =|   +.|.+-.  -+++++++++.   .++++..-|                       |+..+.+++.++.|+
T Consensus       175 aiGn~HG~yk~~g~p~l--~~~~L~~I~~~---~~vPLVLHGgSgvpd~~~~~~~~~gg~~~~~~G~~~e~i~~ai~~Gv  249 (307)
T PRK05835        175 AIGTSHGAFKFKGEPKL--DFERLQEVKRL---TNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGI  249 (307)
T ss_pred             HHCCCCCCCCCCCCCCC--CHHHHHHHHHC---CCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf             86655777777899767--88999999841---79987956898760788888750266567888999999999998697


Q ss_pred             CEEEECHHH
Q ss_conf             899974266
Q gi|254780975|r  192 DLLVVGSSF  200 (224)
Q Consensus       192 d~~V~Gsai  200 (224)
                      .-+-.++-+
T Consensus       250 ~KiNI~Tdl  258 (307)
T PRK05835        250 NKVNTDTDL  258 (307)
T ss_pred             EEEEECHHH
T ss_conf             699868778


No 356
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family; InterPro: IPR011288   This entry describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4 , .; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=75.50  E-value=2.4  Score=22.51  Aligned_cols=178  Identities=15%  Similarity=0.290  Sum_probs=102.1

Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCEEEEE-EECCEECCC-CCC-CHHHHHHH----HHCCCCEEEEEEEEEECCHHHHHHCC
Q ss_conf             632588999999999996599899997-342634584-341-78999986----41256416856788512033676404
Q gi|254780975|r   11 ILAADFSRLGEEISNITKAGAKQIHFD-VMDGCFVPN-ISF-GADVIRSL----RSYSDSVFDCHLMISSIDSHINIIAD   83 (224)
Q Consensus        11 il~~d~~~l~~~i~~l~~~~~d~iHiD-ImDg~fvpn-~~~-~~~~i~~i----~~~t~~~~dvHLMv~~P~~~i~~~~~   83 (224)
                      +-+.|.=|||+ ++.+-+- +--+|-= |.=|+  |. |+. |++.+-+|    .+.-+.|+=+||==-+-.+-|.+=+.
T Consensus        18 vPAFNIHNlET-~QvvvEt-AAel~SPVIlAGT--PGTf~yaG~e~l~al~~~~a~~Y~~PlAlHLDHhe~~ddI~~kv~   93 (282)
T TIGR01858        18 VPAFNIHNLET-IQVVVET-AAELRSPVILAGT--PGTFKYAGTEYLVALCSAAAKKYDMPLALHLDHHESFDDIKQKVA   93 (282)
T ss_pred             CCCCCHHHHHH-HHHHHHH-HHHCCCCEEEECC--CCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHH
T ss_conf             26400212899-9999999-8622788364068--641011007889999999986179960310334688768899975


Q ss_pred             CCCCEEEEECCCC------CCHHHHHHHHHHCCCEE--------E----EEEE----CCCCHHHHHHHHHH--CCEEEEE
Q ss_conf             7760799970664------21589998677649825--------9----9852----33344789988620--1402899
Q gi|254780975|r   84 AGCDIITFHPESS------PHIRRSLRTIHAMGKKT--------G----VAIN----PETPVAILEDVIDE--IDMILIM  139 (224)
Q Consensus        84 ~g~d~i~~H~E~~------~~~~~~i~~i~~~g~k~--------G----iai~----p~T~~~~i~~~l~~--~D~vliM  139 (224)
                      +|...+=+=.-+.      .-..++..+|+..-+-+        |    +..+    ..|.+..=..+++.  +|-+   
T Consensus        94 aGvkS~MIDaSHl~F~~Nv~lvk~VVdFcHr~D~sVEAELG~LgG~EDDl~Vde~~AlyTdP~~A~~Fve~TGvDSL---  170 (282)
T TIGR01858        94 AGVKSVMIDASHLPFEQNVKLVKEVVDFCHRYDASVEAELGRLGGVEDDLSVDEEDALYTDPDEAKEFVEATGVDSL---  170 (282)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCHHH---
T ss_conf             37723556577788888778866666442167865766608465532664254010235896899999874275478---


Q ss_pred             EEECC-----CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf             83067-----76533220135778998654313865269815--899889999996799899974266
Q gi|254780975|r  140 TVNPG-----FGGQQLIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSF  200 (224)
Q Consensus       140 ~V~PG-----~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsai  200 (224)
                      .|=.|     |.+-|-+  =++|+.++|+   .-++++-.=|  ||..|-+++.++.|+--+-+|+-|
T Consensus       171 AvAIGTAHGlY~~aP~L--DF~RL~~IR~---~v~vPLVLHGASdvpde~v~~~IeLGi~KvNVATeL  233 (282)
T TIGR01858       171 AVAIGTAHGLYKEAPKL--DFDRLAKIRE---KVDVPLVLHGASDVPDEDVRRTIELGICKVNVATEL  233 (282)
T ss_pred             HHHHHHHHHHHHCCCCC--CHHHHHHHHH---CCCCCEEECCCCCCCHHHHHHHHHHCCCEEECCHHC
T ss_conf             89886653232126753--3789987522---037772421777887678999987074134111110


No 357
>pfam01208 URO-D Uroporphyrinogen decarboxylase (URO-D).
Probab=75.17  E-value=6.9  Score=19.61  Aligned_cols=16  Identities=25%  Similarity=0.401  Sum_probs=9.1

Q ss_pred             HHHHHHCCCCCCEEEE
Q ss_conf             3367640477607999
Q gi|254780975|r   76 SHINIIADAGCDIITF   91 (224)
Q Consensus        76 ~~i~~~~~~g~d~i~~   91 (224)
                      .|++...++|+|.|.+
T Consensus       183 ~~~~~qi~aGad~i~i  198 (337)
T pfam01208       183 EYLKAQIEAGADAIQI  198 (337)
T ss_pred             HHHHHHHHHCCCEEEE
T ss_conf             9999999829967998


No 358
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=74.71  E-value=7  Score=19.54  Aligned_cols=139  Identities=15%  Similarity=0.225  Sum_probs=62.4

Q ss_pred             CCEEEEEEEEEECCHH---HHHHCCCCCCEEEEECCC--------------CCC---HHHHHHHHHHCC--CEEEEEEEC
Q ss_conf             6416856788512033---676404776079997066--------------421---589998677649--825998523
Q gi|254780975|r   62 DSVFDCHLMISSIDSH---INIIADAGCDIITFHPES--------------SPH---IRRSLRTIHAMG--KKTGVAINP  119 (224)
Q Consensus        62 ~~~~dvHLMv~~P~~~---i~~~~~~g~d~i~~H~E~--------------~~~---~~~~i~~i~~~g--~k~Giai~p  119 (224)
                      +.|+-+.|-..+|+..   .....+.|+|.|-+-+-+              ..+   +.++++.+++..  +-+-+=+..
T Consensus        66 e~p~~vQl~gsdp~~laeaA~~~~~~g~~~IDlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl  145 (323)
T COG0042          66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL  145 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             78779997389989999999999866999898768999289808984477717989999999999985388874999857


Q ss_pred             CC-----CHHHHHHHHHH--CCEEEEEEEEC--CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHH-
Q ss_conf             33-----44789988620--14028998306--77653322013577899865431386526981589-9889999996-
Q gi|254780975|r  120 ET-----PVAILEDVIDE--IDMILIMTVNP--GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQ-  188 (224)
Q Consensus       120 ~T-----~~~~i~~~l~~--~D~vliM~V~P--G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~-  188 (224)
                      +-     ....+...+..  ++.+.|.+-+.  ++.|.    .-++.|+++|+..+.  +.+..-|+| +.+.+..+.+ 
T Consensus       146 G~d~~~~~~~~ia~~~~~~G~~~ltVHgRtr~~~y~~~----a~~~~I~~vk~~~~~--ipvi~NGdI~s~~~a~~~l~~  219 (323)
T COG0042         146 GWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGP----ADWDYIKELKEAVPS--IPVIANGDIKSLEDAKEMLEY  219 (323)
T ss_pred             CCCCHHCCHHHHHHHHHHCCCCEEEEECCCHHHCCCCC----CCHHHHHHHHHHCCC--CEEEECCCCCCHHHHHHHHHH
T ss_conf             87800200999999999679878999556676468986----487999999986799--759857994999999999984


Q ss_pred             CCCCEEEECHHHHCCCCH
Q ss_conf             799899974266378998
Q gi|254780975|r  189 AGADLLVVGSSFFNQKGE  206 (224)
Q Consensus       189 ~Gad~~V~Gsaif~~~d~  206 (224)
                      .|+|-+-+|.+.++.|..
T Consensus       220 tg~DgVMigRga~~nP~l  237 (323)
T COG0042         220 TGADGVMIGRGALGNPWL  237 (323)
T ss_pred             HCCCEEEECHHHHCCCHH
T ss_conf             189879974353169557


No 359
>pfam09587 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=74.65  E-value=7.1  Score=19.53  Aligned_cols=123  Identities=24%  Similarity=0.338  Sum_probs=69.2

Q ss_pred             EEECCHHHHHHCCCCCCEEEEECCCCCC-----HHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHHHCC--EEEEEEEE
Q ss_conf             8512033676404776079997066421-----58999867764982-5998523334478998862014--02899830
Q gi|254780975|r   71 ISSIDSHINIIADAGCDIITFHPESSPH-----IRRSLRTIHAMGKK-TGVAINPETPVAILEDVIDEID--MILIMTVN  142 (224)
Q Consensus        71 v~~P~~~i~~~~~~g~d~i~~H~E~~~~-----~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~~~D--~vliM~V~  142 (224)
                      ..-|.++++.+..+|.|.+++==.++-|     +.++++.+++.|+. +|...+.+   +.-.+.+-.++  .|-+++..
T Consensus        61 f~~~~~~~~~L~~~G~d~vslANNH~~D~G~~G~~~T~~~L~~~gi~~~G~g~~~~---~a~~p~~~~~~g~kia~l~~t  137 (237)
T pfam09587        61 FRAPPENAEALKAAGFDVVSLANNHSLDYGEEGLLDTLDALDRAGIAHAGAGRNLE---EARRPAILEVNGIRIAFLAYT  137 (237)
T ss_pred             EECCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH---HCCCCEEEEECCCEEEEEEEE
T ss_conf             77999999999984999999577643325779999999999987996058889946---627808999799389999987


Q ss_pred             CCCCC---------CC-CC-CHHHHHHHHHHHHHHCCCCE-EEEECCCC---------HHHHHHHHHCCCCEEEECHH
Q ss_conf             67765---------33-22-01357789986543138652-69815899---------88999999679989997426
Q gi|254780975|r  143 PGFGG---------QQ-LI-ESTIPKIRQAKALIGKRSIS-LEVDGGVT---------SRNIKSLVQAGADLLVVGSS  199 (224)
Q Consensus       143 PG~~G---------q~-f~-~~~l~kI~~l~~~~~~~~~~-I~vDGGvn---------~~~i~~l~~~Gad~~V~Gsa  199 (224)
                      -+..+         -. +. +...+.|+++|+   +.++- +.+-.|..         .+....+.++|||.++....
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~k~---~~D~vIv~~HwG~E~~~~p~~~q~~~a~~lidaGaDlIiGhHp  212 (237)
T pfam09587       138 YGTNGWGAGPYRPGVNPLDEEKIKADIRRAKK---KADIVIVSLHWGVEYQYEPTPEQRELAHALIDAGADLVIGHHP  212 (237)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC---CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             58787567888875575699999999998750---7999999877566787699999999999999779999991899


No 360
>TIGR02708 L_lactate_ox L-lactate oxidase; InterPro: IPR014080   Members of this entry oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence..
Probab=74.60  E-value=6  Score=19.97  Aligned_cols=54  Identities=17%  Similarity=0.363  Sum_probs=43.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECH-HHHCCCC
Q ss_conf             20135778998654313865269815899-8899999967998999742-6637899
Q gi|254780975|r  151 IESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGS-SFFNQKG  205 (224)
Q Consensus       151 ~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gs-aif~~~d  205 (224)
                      -|.+++.+.++.+..++ .++|--|-||+ -+++.+....|||.+-+|. .||+---
T Consensus       267 ~PaaFD~L~~vAE~V~~-rVPIVFDSGvRRG~Hv~KALASGAD~VAlGRPv~yGLAl  322 (368)
T TIGR02708       267 GPAAFDSLQEVAEAVDK-RVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLAL  322 (368)
T ss_pred             CCCCCHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHCCCCEEECCCHHHHHHHH
T ss_conf             87520006999998528-556685088432578999872356443013235666550


No 361
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative  electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=74.52  E-value=7.1  Score=19.51  Aligned_cols=147  Identities=14%  Similarity=0.209  Sum_probs=91.9

Q ss_pred             HHHHHHHH-CCCCEEEEEEEEEECC----HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHH
Q ss_conf             99998641-2564168567885120----336764047760799970664215899986776498259985233344789
Q gi|254780975|r   52 DVIRSLRS-YSDSVFDCHLMISSID----SHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAIL  126 (224)
Q Consensus        52 ~~i~~i~~-~t~~~~dvHLMv~~P~----~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i  126 (224)
                      +.|++.|+ .|+.|+-|-+|...|.    ..++-+.+.++..+++..   .+|... ..+++.|+++-..+   .++...
T Consensus        44 ~eI~k~r~~ltdkPFGVNi~~~~p~~~~~~~~~vi~e~kv~vv~~ag---G~P~~~-~~Lk~aGikvi~~V---~Sv~lA  116 (320)
T cd04743          44 ALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAG---GRPDQA-RALEAIGISTYLHV---PSPGLL  116 (320)
T ss_pred             HHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECC---CCCHHH-HHHHHCCCEEEEEC---CCHHHH
T ss_conf             99999999825998445575138872257888888616998999568---890787-99998699799977---999999


Q ss_pred             HHHHH-HCCEEEEEEEECC-CCCC----CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH-HHHHHHCCCC-------
Q ss_conf             98862-0140289983067-7653----3220135778998654313865269815899889-9999967998-------
Q gi|254780975|r  127 EDVID-EIDMILIMTVNPG-FGGQ----QLIESTIPKIRQAKALIGKRSISLEVDGGVTSRN-IKSLVQAGAD-------  192 (224)
Q Consensus       127 ~~~l~-~~D~vliM~V~PG-~~Gq----~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~-i~~l~~~Gad-------  192 (224)
                      +.... -+|.|.+-+-+-| .-|.    .+.|.+++.+....--.+..++++-.-|||-... +.-....|+.       
T Consensus       117 k~~~~~GaDavIaEG~EaGGHiG~~~Tm~Lvpqvvdav~~~~~~~~~~~IPViaAGGI~DGRg~aaa~aLgA~~a~~g~~  196 (320)
T cd04743         117 KQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAK  196 (320)
T ss_pred             HHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCHHHCCCC
T ss_conf             99998499999995745767767530134059898898603566556787489976745618999999838842231562


Q ss_pred             -EEEECHH-HHCCCC
Q ss_conf             -9997426-637899
Q gi|254780975|r  193 -LLVVGSS-FFNQKG  205 (224)
Q Consensus       193 -~~V~Gsa-if~~~d  205 (224)
                       -+-.|+. +|..+-
T Consensus       197 ~GVqmGTrfl~t~E~  211 (320)
T cd04743         197 VGVLMGTAYLFTEEA  211 (320)
T ss_pred             CEEEEECHHHCCHHH
T ss_conf             227860441101554


No 362
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=74.52  E-value=5.9  Score=20.01  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHCCC---CEEEEECCCCHHHHHHHHHCCC--CEEEECHHHHCC
Q ss_conf             3577899865431386---5269815899889999996799--899974266378
Q gi|254780975|r  154 TIPKIRQAKALIGKRS---ISLEVDGGVTSRNIKSLVQAGA--DLLVVGSSFFNQ  203 (224)
Q Consensus       154 ~l~kI~~l~~~~~~~~---~~I~vDGGvn~~~i~~l~~~Ga--d~~V~Gsaif~~  203 (224)
                      ...-.++.|+++++.+   .+|.+-|++++..|..|...|+  |.+=+|+.+...
T Consensus       268 La~Ls~~vR~~LD~aG~~~~kI~aSndLDE~~I~~L~~~ga~ID~fGVGT~LvT~  322 (466)
T PRK09243        268 LAYLSKKVRKMLDEAGFTDTKIVASNDLDEYTIASLKAQGAPIDGFGVGTKLVTA  322 (466)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEECCCEEEEC
T ss_conf             9999999999997678888489994898999999999769972232045436755


No 363
>pfam05582 Peptidase_U57 YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis.
Probab=74.48  E-value=7.1  Score=19.50  Aligned_cols=116  Identities=15%  Similarity=0.292  Sum_probs=77.0

Q ss_pred             EEECCCCCC-HHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHHHC-CEEEEEEEECCCCCC--CCCC--------HHHH
Q ss_conf             997066421-58999867764982-599852333447899886201-402899830677653--3220--------1357
Q gi|254780975|r   90 TFHPESSPH-IRRSLRTIHAMGKK-TGVAINPETPVAILEDVIDEI-DMILIMTVNPGFGGQ--QLIE--------STIP  156 (224)
Q Consensus        90 ~~H~E~~~~-~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~~~-D~vliM~V~PG~~Gq--~f~~--------~~l~  156 (224)
                      ..|....++ +...++.-++.|.. .|..+.-..-.+.+..+++.. -=|+++|-..|+.-.  .|..        .-.+
T Consensus       108 VLHiDGD~~YL~~Cl~~Ykql~i~a~G~~i~E~eqP~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dL~~YrnSkyFVe  187 (287)
T pfam05582       108 VLHLDGDPEYLDKCLKVYKQLGLPAVGVHISEKEQPEKIESLLEKYRPDILVITGHDAYLKNKGDYGDLNNYRNSKYFVE  187 (287)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHCHHHHHHHHHHHCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             88754989999999999997198458998360125299999998728998999584576337777346666541099999


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHH-HHCCCCH
Q ss_conf             7899865431386526981589988999999679989997426-6378998
Q gi|254780975|r  157 KIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSS-FFNQKGE  206 (224)
Q Consensus       157 kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsa-if~~~d~  206 (224)
                      -|+++|++.++.+--+...| --+.+...+.+||||..-+-+- +.-.-||
T Consensus       188 aVk~AR~y~p~~D~LVIFAG-ACQS~yEall~AGANFASSP~RVlIHaLDP  237 (287)
T pfam05582       188 TVKEARKYEPSLDQLVIFAG-ACQSHYEAIIEAGANFASSPSRVLIHALDP  237 (287)
T ss_pred             HHHHHHHCCCCCCCEEEECC-HHHHHHHHHHHCCCCCCCCCCCEEEECCCC
T ss_conf             99999824899663899821-447889999972766447952167750585


No 364
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=74.41  E-value=7.2  Score=19.49  Aligned_cols=96  Identities=22%  Similarity=0.289  Sum_probs=56.1

Q ss_pred             CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH------CCEEEEEEEE-CCCCCCCCCCHHHHH---HHHHHHHHHC
Q ss_conf             15899986776498259985233344789988620------1402899830-677653322013577---8998654313
Q gi|254780975|r   98 HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDE------IDMILIMTVN-PGFGGQQLIESTIPK---IRQAKALIGK  167 (224)
Q Consensus        98 ~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~------~D~vliM~V~-PG~~Gq~f~~~~l~k---I~~l~~~~~~  167 (224)
                      |--...+.||+.|..-|+..+.+.+.+.+...+..      .|.+--.|.. |-.    |.+....+   ...-.+-.+.
T Consensus       117 DTRaLTk~IR~~G~m~g~I~~~~~~~~~l~~~~~~~~~~~~~dLv~~VSt~~~y~----~~~~~~~~~~~~~~~~~~~~~  192 (383)
T CHL00197        117 DTRALVRHLRRFGTMNGCISNQNLNLSYLEAKIKELPSMEGLDLAPSVTTSSYYE----WDEPSHPKWFYLADNKRPHSS  192 (383)
T ss_pred             CHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCEE----ECCCCCCCCCCCCCCCCCCCC
T ss_conf             7899999999649824999079899899999987489965785424851688777----068876543213434445888


Q ss_pred             CCCE-EEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf             8652-69815899889999996799899974
Q gi|254780975|r  168 RSIS-LEVDGGVTSRNIKSLVQAGADLLVVG  197 (224)
Q Consensus       168 ~~~~-I~vDGGvn~~~i~~l~~~Gad~~V~G  197 (224)
                      .+++ ..+|=|+....++.|.+.|+++.|+-
T Consensus       193 ~~~~VvviD~GiK~nILr~L~~~g~~v~VvP  223 (383)
T CHL00197        193 YPLRIIVIDFGVKYNILRRLKSFGCEITIVP  223 (383)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHCCCEEEEEC
T ss_conf             8745999967771889999997899899989


No 365
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=74.40  E-value=7.2  Score=19.49  Aligned_cols=185  Identities=13%  Similarity=0.163  Sum_probs=107.5

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECC--EECCCCCCCHHHHHHHHH--CCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             706325889999999999965998999973426--345843417899998641--2564168567885120336764047
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDG--CFVPNISFGADVIRSLRS--YSDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg--~fvpn~~~~~~~i~~i~~--~t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      |++=+.|+..+..-++..++.+..-+ +-+-.|  .|.+.+..-...++.+.+  ....|+-+||==-.-...+....++
T Consensus        21 ~AfNv~n~e~~~Avi~AAee~~sPvI-lq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~VPV~lHLDH~~~~e~i~~ai~~   99 (285)
T PRK07709         21 GQFNMNNLEWTQAILAAAEEEKSPVI-LGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDA   99 (285)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCEE-EECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHC
T ss_conf             99788999999999999999788999-99374588765677899999999999838999889889999999999999972


Q ss_pred             CCCEEEEECCCC---CC---HHHHHHHHHHCCCEE----EEE--------E--ECCCCHHHHHHHHHHCCEEEEEEEECC
Q ss_conf             760799970664---21---589998677649825----998--------5--233344789988620140289983067
Q gi|254780975|r   85 GCDIITFHPESS---PH---IRRSLRTIHAMGKKT----GVA--------I--NPETPVAILEDVIDEIDMILIMTVNPG  144 (224)
Q Consensus        85 g~d~i~~H~E~~---~~---~~~~i~~i~~~g~k~----Gia--------i--~p~T~~~~i~~~l~~~D~vliM~V~PG  144 (224)
                      |-+.|-+-.-..   ++   -.++.++++..|+.+    |-.        -  ...|.++....+.... .|-.+.|--|
T Consensus       100 Gf~SVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~T~pe~a~~Fv~~T-gvD~LAvaiG  178 (285)
T PRK07709        100 GFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEAT-GIDCLAPALG  178 (285)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCEEEHHHC
T ss_conf             997798529989999999999999999987498399972323675677677555157999999999731-8788842205


Q ss_pred             C-----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf             7-----6533220135778998654313865269815--899889999996799899974266
Q gi|254780975|r  145 F-----GGQQLIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSF  200 (224)
Q Consensus       145 ~-----~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsai  200 (224)
                      .     .|.+-.  -+++++++++   ..++++-.-|  |+..+.++++++.|+..+-.++-+
T Consensus       179 n~HG~yk~~p~l--~~~~l~~i~~---~~~vPLVLHGgSG~~~e~i~~ai~~Gv~KiNi~T~l  236 (285)
T PRK07709        179 SVHGPYKGEPNL--GFAEMEQVRD---FTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTEN  236 (285)
T ss_pred             CCCCCCCCCCCC--CHHHHHHHHH---CCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHH
T ss_conf             555776898876--6999999984---059987964999999999999998598599988288


No 366
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=74.32  E-value=7.2  Score=19.48  Aligned_cols=184  Identities=13%  Similarity=0.146  Sum_probs=109.0

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEEC---CEECCCCCCCHHHHHHHHHC-CCCEEEEEE---EEEECCHHHHHHCCCCCC
Q ss_conf             88999999999996599899997342---63458434178999986412-564168567---885120336764047760
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVMD---GCFVPNISFGADVIRSLRSY-SDSVFDCHL---MISSIDSHINIIADAGCD   87 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDImD---g~fvpn~~~~~~~i~~i~~~-t~~~~dvHL---Mv~~P~~~i~~~~~~g~d   87 (224)
                      -.-++.++...|.++|+..+|+-+=|   |.-.......-+.++.||+. +++.+-+-.   ...+|+.-+..+...++|
T Consensus        24 Tp~Eia~~A~~c~~AGAsivH~HvRd~~dG~~s~d~~~y~e~i~~Ir~~~pd~ii~~Ttg~~~~~~~eeR~~~v~~~~Pd  103 (274)
T pfam05853        24 TPEEIAEEAVAAAEAGAAIVHLHVRDPEDGRPSQDPELFREVLERIREAVPDVIINLTTGGSPGMTVEERLAPVEALRPE  103 (274)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             98999999999997087389988447888990688999999999999878996899457877889888999999860988


Q ss_pred             EEEEECCCC---------------CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH------CCEEEEEEEECCCC
Q ss_conf             799970664---------------215899986776498259985233344789988620------14028998306776
Q gi|254780975|r   88 IITFHPESS---------------PHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDE------IDMILIMTVNPGFG  146 (224)
Q Consensus        88 ~i~~H~E~~---------------~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~------~D~vliM~V~PG~~  146 (224)
                      +.++..-+.               ..+.++..++++.|+++-+.+=-...+..+..++..      .-+.++|++   .+
T Consensus       104 ~aSl~~gs~nf~~~~~d~v~~n~~~~~~~~~~~~~~~gi~pe~e~yd~g~l~~~~~l~~~G~l~~p~~~~~vlG~---~~  180 (274)
T pfam05853       104 MASLNMGSMNFGLYSRDMVFPNTPADVEEFAARMQEAGVKPEFECFDVGHLRNAARLLKRGLLKGPLFVQFVLGV---LG  180 (274)
T ss_pred             EEEECCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECC---CC
T ss_conf             577446664356567772013999999999999998599149999779999999999970888999579999626---87


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHCCCCEEEEC-HHHHCCC
Q ss_conf             5332201357789986543138-65269815899889999996799899974-2663789
Q gi|254780975|r  147 GQQLIESTIPKIRQAKALIGKR-SISLEVDGGVTSRNIKSLVQAGADLLVVG-SSFFNQK  204 (224)
Q Consensus       147 Gq~f~~~~l~kI~~l~~~~~~~-~~~I~vDGGvn~~~i~~l~~~Gad~~V~G-saif~~~  204 (224)
                      |++-.+..+.   .+.+.++.. ...++.=|.--..-.......|-++=|.= -.+|-.+
T Consensus       181 g~~~~p~~L~---~~l~~lp~~~~w~v~~~G~~~~~~~~~A~~~GGhvRVGlEDn~~~~~  237 (274)
T pfam05853       181 GMPADPENLL---HMLRTLPRGATWSVAGIGRNQLPLAAAAAALGGHVRVGLEDNLYLDK  237 (274)
T ss_pred             CCCCCHHHHH---HHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf             8999999999---99963878971899951754449999999809964870565533789


No 367
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=74.21  E-value=7.2  Score=19.46  Aligned_cols=186  Identities=20%  Similarity=0.291  Sum_probs=90.7

Q ss_pred             EEECHHHHCC-CHHHHHHH---HHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEE---------------
Q ss_conf             1881706325-88999999---9999965998999973426345843417899998641256416---------------
Q gi|254780975|r    5 IQIVPSILAA-DFSRLGEE---ISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF---------------   65 (224)
Q Consensus         5 ~~IspSil~~-d~~~l~~~---i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~---------------   65 (224)
                      .||-++|-.. |..+++.|   ++...++|+|.    |||=.--.++   .++-+.+-+.+.+|+               
T Consensus        62 tKVNaNIGtS~~~~d~~~E~eK~~~A~~~GADt----iMDLStGGdl---~~iR~~il~~s~vpvGTVPiYqa~~~~~~~  134 (433)
T PRK13352         62 TKVNANIGTSSDISDIEEELEKAKVAVKYGADT----IMDLSTGGDL---DEIRRAIIEASPVPVGTVPIYQAAIEAARK  134 (433)
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCE----EEECCCCCCH---HHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             689711168988798899999999999829985----7865777466---999999996499886780199999999880


Q ss_pred             --EE-EEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEE----------------EC-CCCHHH
Q ss_conf             --85-67885120336764047760799970664215899986776498259985----------------23-334478
Q gi|254780975|r   66 --DC-HLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAI----------------NP-ETPVAI  125 (224)
Q Consensus        66 --dv-HLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai----------------~p-~T~~~~  125 (224)
                        ++ ++=.++-.+.+++=.+-|+|++|+|+--+.+   .+..+++.+-..|++=                || .+.++.
T Consensus       135 ~~~~~~mt~d~~f~~ie~qa~~GVDfmTiH~Gi~~~---~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPlye~fD~  211 (433)
T PRK13352        135 YGSIVDMTEDDLFDVIEKQAKDGVDFMTIHCGVTRE---TLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDY  211 (433)
T ss_pred             CCCHHHCCHHHHHHHHHHHHHHCCCEEEECCCCHHH---HHHHHHHCCCCCCEECCCHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             599555999999999999997189879962022399---99999845870351315729999999974775834660999


Q ss_pred             HHHHHHHCCEEEEEE--EECCCCCCCCCCHHHH---HHHHHHHHHHCCCCEEEEEC--CCCHHHHH------HHHHCCCC
Q ss_conf             998862014028998--3067765332201357---78998654313865269815--89988999------99967998
Q gi|254780975|r  126 LEDVIDEIDMILIMT--VNPGFGGQQLIESTIP---KIRQAKALIGKRSISLEVDG--GVTSRNIK------SLVQAGAD  192 (224)
Q Consensus       126 i~~~l~~~D~vliM~--V~PG~~Gq~f~~~~l~---kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~------~l~~~Gad  192 (224)
                      +-.++..-|..|=++  ..||.---.-...-+.   -+-+|-+.-.++++...|.|  -|-.+.|.      +=.-.||-
T Consensus       212 lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~EL~~lgeL~~rA~e~gVQvMvEGPGHvPl~~I~~nv~l~K~lc~~AP  291 (433)
T PRK13352        212 LLEILKEYDVTLSLGDGLRPGCIADATDRAQIQELITLGELTKRAREAGVQVMVEGPGHVPLDQIEANVKLQKELCHGAP  291 (433)
T ss_pred             HHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             99999974936871477788754667738899999999999999998399889879998778999999999999617998


Q ss_pred             EEEECHHH
Q ss_conf             99974266
Q gi|254780975|r  193 LLVVGSSF  200 (224)
Q Consensus       193 ~~V~Gsai  200 (224)
                      .+|+|--.
T Consensus       292 fYvLGPLv  299 (433)
T PRK13352        292 FYVLGPLV  299 (433)
T ss_pred             CEECCCCC
T ss_conf             00028610


No 368
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=74.19  E-value=7.3  Score=19.46  Aligned_cols=175  Identities=17%  Similarity=0.279  Sum_probs=101.1

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHH-HCC-CCEEEEEEEEEE---CC-------HHHHHHC
Q ss_conf             88999999999996599899997342634584341789999864-125-641685678851---20-------3367640
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLR-SYS-DSVFDCHLMISS---ID-------SHINIIA   82 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~-~~t-~~~~dvHLMv~~---P~-------~~i~~~~   82 (224)
                      .+.+++..++.+-++|+|.+..             -+-+++... .+. +.|+=+||=..+   |.       ..+++..
T Consensus        41 gl~d~e~~v~~~~~~g~dav~~-------------~~Gi~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai  107 (265)
T COG1830          41 GLEDPENIVAKVAEAGADAVAM-------------TPGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAI  107 (265)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEE-------------CHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEHHHHH
T ss_conf             4269999999998548998984-------------675886507553577677999646665677864311234098897


Q ss_pred             CCCCCEEEEECC----C----CCCHHHHHHHHHHCCCEEEEEE---ECCCCH--HHHHHHHHH---------CCEEEEEE
Q ss_conf             477607999706----6----4215899986776498259985---233344--789988620---------14028998
Q gi|254780975|r   83 DAGCDIITFHPE----S----SPHIRRSLRTIHAMGKKTGVAI---NPETPV--AILEDVIDE---------IDMILIMT  140 (224)
Q Consensus        83 ~~g~d~i~~H~E----~----~~~~~~~i~~i~~~g~k~Giai---~p~T~~--~~i~~~l~~---------~D~vliM~  140 (224)
                      ..|+|-+.+|.-    .    ..++.++...++++|+-+-+-.   +|...-  +.-..+..+         .|.|-.  
T Consensus       108 ~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~--  185 (265)
T COG1830         108 RLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKT--  185 (265)
T ss_pred             HCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE--
T ss_conf             478747999996687625899999999999998709964998813587765444336899999999999865776861--


Q ss_pred             EECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-------HHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
Q ss_conf             3067765332201357789986543138652698158998-------899999967998999742663789989999999
Q gi|254780975|r  141 VNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-------RNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL  213 (224)
Q Consensus       141 V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-------~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l  213 (224)
                         .+.|-+         ..++....-....+-+-||=..       +-...+.++|+.-++.|.-||+.++|....+.+
T Consensus       186 ---~ytg~~---------e~F~~vv~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~am~~Ai  253 (265)
T COG1830         186 ---KYTGDP---------ESFRRVVAACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAI  253 (265)
T ss_pred             ---CCCCCH---------HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             ---599984---------78999997189987984798889749999999999983573033310332468869999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780975|r  214 NDL  216 (224)
Q Consensus       214 ~~l  216 (224)
                      ...
T Consensus       254 ~~I  256 (265)
T COG1830         254 QAI  256 (265)
T ss_pred             HHH
T ss_conf             999


No 369
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=73.98  E-value=7.3  Score=19.42  Aligned_cols=96  Identities=18%  Similarity=0.281  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEE--EEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf             5889999999999965998999973426345843417899998641256416--85678851203367640477607999
Q gi|254780975|r   14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF--DCHLMISSIDSHINIIADAGCDIITF   91 (224)
Q Consensus        14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~--dvHLMv~~P~~~i~~~~~~g~d~i~~   91 (224)
                      +|...--++|++|+++|+|.+-+-+-|-.       ..+-++.|++.++.|+  |+|.-    .++.-...++|++.+-+
T Consensus        33 ~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e-------~A~A~~~Ik~~~~vPLVaDiHf~----~rla~~~~~~g~~k~RI  101 (361)
T COG0821          33 ADVEATVAQIKALERAGCDIVRVTVPDME-------AAEALKEIKQRLNVPLVADIHFD----YRLALEAAECGVDKVRI  101 (361)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECCCHH-------HHHHHHHHHHHCCCCEEEEEECC----HHHHHHHHHCCCCEEEE
T ss_conf             01799999999999818978999369978-------99999999984799879873056----89999756427426987


Q ss_pred             ECCCCC---CHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             706642---15899986776498259985233
Q gi|254780975|r   92 HPESSP---HIRRSLRTIHAMGKKTGVAINPE  120 (224)
Q Consensus        92 H~E~~~---~~~~~i~~i~~~g~k~Giai~p~  120 (224)
                      -.-...   ....+++.++.+|+-.-|..|-+
T Consensus       102 NPGNig~~~~v~~vVe~Ak~~g~piRIGVN~G  133 (361)
T COG0821         102 NPGNIGFKDRVREVVEAAKDKGIPIRIGVNAG  133 (361)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             78656736779999999997599879952668


No 370
>pfam01168 Ala_racemase_N Alanine racemase, N-terminal domain.
Probab=73.42  E-value=7.6  Score=19.34  Aligned_cols=147  Identities=10%  Similarity=0.060  Sum_probs=78.3

Q ss_pred             HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCC-------CH
Q ss_conf             89999864125641685678851203367640477607999706642158999867764982599852333-------44
Q gi|254780975|r   51 ADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPET-------PV  123 (224)
Q Consensus        51 ~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T-------~~  123 (224)
                      .+....+|+. ..+.+++++--.+.+.+..+.+.+....   ..+.+.+....+..++.+.+..+-|.-+|       +.
T Consensus        55 ~~Ea~~lr~~-~~~~~Il~l~~~~~~~~~~~~~~~~~~~---v~s~~~l~~l~~~~~~~~~~~~v~l~vdtGm~R~G~~~  130 (216)
T pfam01168        55 LQEALELREA-GITAPILVLGFFPPEELALAAEYDLIPT---VDSLEQAEALSAAAAKLGRPLRVHLKVDTGMGRLGFTP  130 (216)
T ss_pred             HHHHHHHHHH-CCCCCEEEECCCCHHHHHHHHHCCCEEE---ECCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCH
T ss_conf             9999999981-8987077736899699999998597899---78899999999999985998089999974787688799


Q ss_pred             HHHHHHH-----HHCCEEEEEEEECCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf             7899886-----201402899830677653-3220135778998654313865269815899889999996799899974
Q gi|254780975|r  124 AILEDVI-----DEIDMILIMTVNPGFGGQ-QLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVG  197 (224)
Q Consensus       124 ~~i~~~l-----~~~D~vliM~V~PG~~Gq-~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~G  197 (224)
                      +.+..++     +.+...-+||--|-.... .+...-+++.+++.+.++..+.  .+=+|-+..........|.|.+=.|
T Consensus       131 ~~~~~~~~~i~~~~l~~~Gi~tH~~~~d~~~~~~~~q~~~f~~~~~~l~~~~~--~~s~~nS~~~~~~~~~~~~~~vR~G  208 (216)
T pfam01168       131 EELPALAEALALPGLRLEGLMTHFACADEPDATNRAQLARFRELADALEAAGP--VLSLGNSAALLLAPLHEGFDMVRPG  208 (216)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--EEEHHCCHHHHHHHHHCCCCEEEEC
T ss_conf             99999999985599967899950588789758999999999999998656899--9851161889853756489978307


Q ss_pred             HHHHCC
Q ss_conf             266378
Q gi|254780975|r  198 SSFFNQ  203 (224)
Q Consensus       198 saif~~  203 (224)
                      +++|+.
T Consensus       209 ~~lyG~  214 (216)
T pfam01168       209 IALYGA  214 (216)
T ss_pred             HHHCCC
T ss_conf             211187


No 371
>KOG3157 consensus
Probab=73.40  E-value=7.6  Score=19.33  Aligned_cols=154  Identities=18%  Similarity=0.265  Sum_probs=83.5

Q ss_pred             CCCHHHHHHHH-HCCCCEEEE--EEEEEECCHHHHHHCCCCCCEEEEE-CCCCCCHHHHHHHHHHC-CC----EEEEEEE
Q ss_conf             41789999864-125641685--6788512033676404776079997-06642158999867764-98----2599852
Q gi|254780975|r   48 SFGADVIRSLR-SYSDSVFDC--HLMISSIDSHINIIADAGCDIITFH-PESSPHIRRSLRTIHAM-GK----KTGVAIN  118 (224)
Q Consensus        48 ~~~~~~i~~i~-~~t~~~~dv--HLMv~~P~~~i~~~~~~g~d~i~~H-~E~~~~~~~~i~~i~~~-g~----k~Giai~  118 (224)
                      .||-..+.++- +-+.+|-|+  |..-.-..+.+.++.. -+...+++ .++. ...+.++...+. |.    ++-+-+|
T Consensus        56 ~FGENYVQEl~eKap~lp~DI~WHFIG~lQsnK~kkl~s-vpnL~~vetVDse-K~A~~ld~a~~k~g~~~PL~V~VQvN  133 (244)
T KOG3157          56 HFGENYVQELIEKAPLLPDDIKWHFIGHLQSNKCKKLLS-VPNLYSVETVDSE-KKARKLDSAWSKLGPDNPLKVLVQVN  133 (244)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEECHHHHCCCCHHCC-CCCEEEEEECCHH-HHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf             045889999998462476213265644132311001106-7864788731269-89888889999529999728999961


Q ss_pred             -----------CCCCHHHHHHH---HHHCCEEEEEEEE-CCCC---CCCCCCHHHHHHHHHHHHHHCCCCE---EEEECC
Q ss_conf             -----------33344789988---6201402899830-6776---5332201357789986543138652---698158
Q gi|254780975|r  119 -----------PETPVAILEDV---IDEIDMILIMTVN-PGFG---GQQLIESTIPKIRQAKALIGKRSIS---LEVDGG  177 (224)
Q Consensus       119 -----------p~T~~~~i~~~---l~~~D~vliM~V~-PG~~---Gq~f~~~~l~kI~~l~~~~~~~~~~---I~vDGG  177 (224)
                                 |..-++..+.+   .+++.+.-+||+- +|++   |..-.-.++-++|+  ++..+.++.   +++-=|
T Consensus       134 TSGEd~K~Giepse~~~l~~~i~~~c~nL~f~GlMTIGs~~~s~ss~eNpDF~~L~~~r~--~ic~~lg~~~dq~eLSMG  211 (244)
T KOG3157         134 TSGEDSKSGIEPSEAPELAEHIKSECKNLKFSGLMTIGSFDNSHSSGENPDFQVLVKLRE--SICKKLGIPADQVELSMG  211 (244)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHH--HHHHHHCCCHHHHHHHCC
T ss_conf             677544579883665999999998687634520477535666556899965799999999--999984898678100235


Q ss_pred             CCHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf             99889999996799899974266378998
Q gi|254780975|r  178 VTSRNIKSLVQAGADLLVVGSSFFNQKGE  206 (224)
Q Consensus       178 vn~~~i~~l~~~Gad~~V~Gsaif~~~d~  206 (224)
                      .+. .....++.|.+.+-+||.||+..++
T Consensus       212 MS~-DF~~AIe~Gst~VRvGStIFG~R~y  239 (244)
T KOG3157         212 MSA-DFLLAIEQGSTNVRVGSTIFGAREY  239 (244)
T ss_pred             CCH-HHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf             636-6999998088537732521267888


No 372
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH).  Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate.  These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=73.37  E-value=7.6  Score=19.33  Aligned_cols=109  Identities=16%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             EECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCH-HHHHHCC-
Q ss_conf             88170632588999999999996599899997342634584341789999864125641685678851203-3676404-
Q gi|254780975|r    6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDS-HINIIAD-   83 (224)
Q Consensus         6 ~IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~-~i~~~~~-   83 (224)
                      ++.-.+...||..+.+..++-.++|+++|-+-+-..     ..-+.+.++.+-+......++-||++.+.- .++.-.+ 
T Consensus        15 ~~~~~i~~~d~~~i~~~A~~Q~~~GA~~LDVN~g~~-----~~de~~~M~~~v~~vq~~~~~Pl~iDS~~~~~iEaaLk~   89 (252)
T cd00740          15 KFRELIKAEDYDEALDVARQQVEGGAQILDLNVDYG-----GLDGVSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKC   89 (252)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCC-----CCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH
T ss_conf             999999857989999999999984998899528964-----536599999999998547899857617989999999997


Q ss_pred             CCCCEEE--EECCC-CCCHHHHHHHHHHCCCE-EEEEEEC
Q ss_conf             7760799--97066-42158999867764982-5998523
Q gi|254780975|r   84 AGCDIIT--FHPES-SPHIRRSLRTIHAMGKK-TGVAINP  119 (224)
Q Consensus        84 ~g~d~i~--~H~E~-~~~~~~~i~~i~~~g~k-~Giai~p  119 (224)
                      ++...+.  +-.|- .+.+++.+..++++|+. +++++..
T Consensus        90 ~~Gr~iINSis~e~g~er~~~i~pLakkyga~vI~L~~de  129 (252)
T cd00740          90 CQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFDE  129 (252)
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf             6998677416344548899999999987099899995289


No 373
>PTZ00333 triosephosphate isomerase; Provisional
Probab=73.22  E-value=7.6  Score=19.31  Aligned_cols=124  Identities=17%  Similarity=0.369  Sum_probs=78.3

Q ss_pred             HHHHCCCCCCEEEE-EC-------CCCCCHHHHHHHHHHCCCEEEEEEECC-------CCHHH----HHHHHHHC--CE-
Q ss_conf             67640477607999-70-------664215899986776498259985233-------34478----99886201--40-
Q gi|254780975|r   78 INIIADAGCDIITF-HP-------ESSPHIRRSLRTIHAMGKKTGVAINPE-------TPVAI----LEDVIDEI--DM-  135 (224)
Q Consensus        78 i~~~~~~g~d~i~~-H~-------E~~~~~~~~i~~i~~~g~k~Giai~p~-------T~~~~----i~~~l~~~--D~-  135 (224)
                      ..++.+.|++++.+ |.       |+.+.+..-+..+.+.|..+-+.+.-.       .-.+.    +..+++.+  +. 
T Consensus        82 a~mL~d~g~~yviiGHSERR~~f~Etd~~i~~K~~~al~~~l~pIlCIGE~~~er~~g~~~~vl~~Ql~~~~~~~~~~~~  161 (252)
T PTZ00333         82 AEMLKDLGIEWVIIGHSERRQYFGETDEIVAQKVKNALNNGLKVILCIGETLQEREAGQTSAVLLTQLKAIAKKVKEDWD  161 (252)
T ss_pred             HHHHHHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf             99999869998997758989872998799999999999859979999377599886467799999999998731413232


Q ss_pred             EEEEEEEC----CCCCCCCCCHHHHHH-HHHHHHHHC-------CCCEEEEECCCCHHHHHHHH-HCCCCEEEECHHHHC
Q ss_conf             28998306----776533220135778-998654313-------86526981589988999999-679989997426637
Q gi|254780975|r  136 ILIMTVNP----GFGGQQLIESTIPKI-RQAKALIGK-------RSISLEVDGGVTSRNIKSLV-QAGADLLVVGSSFFN  202 (224)
Q Consensus       136 vliM~V~P----G~~Gq~f~~~~l~kI-~~l~~~~~~-------~~~~I~vDGGvn~~~i~~l~-~~Gad~~V~Gsaif~  202 (224)
                      =++..=+|    | .|+.-.++-...+ +.+|+.+.+       .++.|---|+||.+|+.++. ..++|-+-+|+|=.+
T Consensus       162 ~iiIAYEPvWAIG-TG~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ILYGGSVn~~Na~~i~~~~~vDG~LVGgASL~  240 (252)
T PTZ00333        162 KVVIAYEPVWAIG-TGKVATPEQAQEVHAFIRKWLSEKVGADVAKKVRIIYGGSVNEKNCHELIKQPDIDGFLVGGASLK  240 (252)
T ss_pred             CEEEEECCHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEEECCCCHHHHHHHHCCCCCCEEEECHHHCC
T ss_conf             4189966765358-899999999999999999999987185450677488727779999999966889997896005379


No 374
>COG0280 Pta Phosphotransacetylase [Energy production and conversion]
Probab=73.09  E-value=7.7  Score=19.29  Aligned_cols=198  Identities=17%  Similarity=0.227  Sum_probs=108.6

Q ss_pred             ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECC-CCCCCHHHHHHHHHCC-CCEEEEEEEE-EECCHHHHHHCC
Q ss_conf             817063258899999999999659989999734263458-4341789999864125-6416856788-512033676404
Q gi|254780975|r    7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVP-NISFGADVIRSLRSYS-DSVFDCHLMI-SSIDSHINIIAD   83 (224)
Q Consensus         7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvp-n~~~~~~~i~~i~~~t-~~~~dvHLMv-~~P~~~i~~~~~   83 (224)
                      +.--++-++...+++.++.   .|.+.=++.|+|-+-.+ -+.=..+.+-++++.- -.+-+++-++ .+|..+--.++.
T Consensus        38 ~~~~ilvg~~~~i~~~~~~---~gl~l~~~eiidp~~~~~~~~~y~~~~~e~~k~kG~t~~~a~~~~~~d~~~~a~~mv~  114 (327)
T COG0280          38 LAKPILVGRPEEIEEVAKA---LGLDLDGIEIINPELDPERFEEYVDRLYELRKRKGVTPEDAQELVREDPTVFAAMMVA  114 (327)
T ss_pred             CCCEEEECCHHHHHHHHHH---HCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             7752897489999999998---3546564478672227066899999999996437999999998854480899999997


Q ss_pred             CC-CCEEEEECCCCC-C-HHHHHHHHHHC-CCE-EE-E---------------EEECCCCHHHHHHHHHH-CCEEEEEEE
Q ss_conf             77-607999706642-1-58999867764-982-59-9---------------85233344789988620-140289983
Q gi|254780975|r   84 AG-CDIITFHPESSP-H-IRRSLRTIHAM-GKK-TG-V---------------AINPETPVAILEDVIDE-IDMILIMTV  141 (224)
Q Consensus        84 ~g-~d~i~~H~E~~~-~-~~~~i~~i~~~-g~k-~G-i---------------ai~p~T~~~~i~~~l~~-~D~vliM~V  141 (224)
                      .| +|-+.-=...+. + +...++.|... |.+ ++ +               ++|++-..+.+..+... ++...-|++
T Consensus       115 ~g~aD~~v~G~~~tt~~~lr~~lqii~~~pG~~~~s~v~im~~~~~~l~~~D~avn~~PtaeeladIa~~sa~~a~~fgi  194 (327)
T COG0280         115 LGEADGLVSGAVHTTADTLRPALQIIGTRPGVSLVSSVFIMLLPDGTLFFADCAVNPDPTAEELADIAENAAETARRFGI  194 (327)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             59887897557667798998899870888987667878999937960899713357897999999999999999998089


Q ss_pred             ECC-----CC-CCCCCCHHHHHHHHHHHHHHCCCC-EEEEECCCCHHHHH---HHHHCCCCEEEECHH-HHCCCCHH
Q ss_conf             067-----76-533220135778998654313865-26981589988999---999679989997426-63789989
Q gi|254780975|r  142 NPG-----FG-GQQLIESTIPKIRQAKALIGKRSI-SLEVDGGVTSRNIK---SLVQAGADLLVVGSS-FFNQKGEI  207 (224)
Q Consensus       142 ~PG-----~~-Gq~f~~~~l~kI~~l~~~~~~~~~-~I~vDGGvn~~~i~---~l~~~Gad~~V~Gsa-if~~~d~~  207 (224)
                      +|-     |+ +..-.-...+|++++.++..+... ++.+||=+-.+.+-   ...+.+.+.-|.|+| +|=-||..
T Consensus       195 ~PkVAlLS~St~gs~~~~~~~kv~ea~~i~~~~~~~dl~vDGelq~DaA~~~~va~~k~p~s~vaG~ANvlVfP~Le  271 (327)
T COG0280         195 EPKVALLSYSTFGSGKGPSTDKVREATKILRERAPPDLEVDGELQFDAALVEKVAAKKAPDSPLAGSANVLVFPDLE  271 (327)
T ss_pred             CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCHHHHCCHHHHHHHCCCCCCCCCCCEEECCCCH
T ss_conf             87068997542788888107999999999971697566660675243553999999538999767877789748821


No 375
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=73.00  E-value=7.7  Score=19.27  Aligned_cols=175  Identities=17%  Similarity=0.300  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHH-HC-CCCEEEEEEEEE-----EC-----CHHHHHHCC
Q ss_conf             8999999999996599899997342634584341789999864-12-564168567885-----12-----033676404
Q gi|254780975|r   16 FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLR-SY-SDSVFDCHLMIS-----SI-----DSHINIIAD   83 (224)
Q Consensus        16 ~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~-~~-t~~~~dvHLMv~-----~P-----~~~i~~~~~   83 (224)
                      +.+++..++.+.++|+|-+-.             ..=.++... .+ .+.|+=+||=..     +|     .-.++....
T Consensus        38 l~d~~~~i~~~~~~g~dai~~-------------~~G~~~~~~~~~~~~~~lil~l~~~t~~~~~~~~~~~~~sVeeAvr  104 (266)
T PRK07226         38 LVDMRETVNKVAEGGADAVLM-------------HKGLARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEDAIK  104 (266)
T ss_pred             CCCHHHHHHHHHHCCCCEEEE-------------CHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHEEECCHHHHHH
T ss_conf             359999999998639999996-------------7677864352215788749994377314788640101214999985


Q ss_pred             CCCCEEEEECCC--------CCCHHHHHHHHHHCCCEEEEEEEC-------CCCHHHHHHHHH---H--CCEEEEEEEEC
Q ss_conf             776079997066--------421589998677649825998523-------334478998862---0--14028998306
Q gi|254780975|r   84 AGCDIITFHPES--------SPHIRRSLRTIHAMGKKTGVAINP-------ETPVAILEDVID---E--IDMILIMTVNP  143 (224)
Q Consensus        84 ~g~d~i~~H~E~--------~~~~~~~i~~i~~~g~k~Giai~p-------~T~~~~i~~~l~---~--~D~vliM~V~P  143 (224)
                      .|+|-+.+|.--        ..++-++...+++.|.=+-+-.-|       .+..+.+....-   +  .|.|=+   + 
T Consensus       105 lGAdaV~~~v~~Gs~~E~~~l~~l~~l~~ea~~~GlPll~~~yprG~~~~~~~d~~~ia~aaRia~ELGADiVKv---~-  180 (266)
T PRK07226        105 LGADAVSVHVNVGSETEAEMLEDLGRIARECEEWGMPLLAMMYPRGPKIKNEYDPEVVAHAARVGAELGADIIKT---N-  180 (266)
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE---C-
T ss_conf             587789998547998379999999999999998599569997346887777875999999999999967998983---5-


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH-------HHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHH
Q ss_conf             7765332201357789986543138652698158998-------899999967998999742663789989999999999
Q gi|254780975|r  144 GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-------RNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       144 G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-------~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~~l  216 (224)
                       +.|   .++.+.++-+      .-...+-+-||=+.       +.+....++|+.-++.|.-+|..+||....+.|..+
T Consensus       181 -y~g---d~e~f~~vv~------~~~vPVliaGG~k~~~~~~~L~~v~~ai~aGa~Gv~~GRNvfQ~~~p~~~~~al~~i  250 (266)
T PRK07226        181 -YTG---DPESFREVVE------GCPVPVVIAGGPKTGSDLEFLQMVEDAMEAGAAGVAIGRNIFQHEDPAKITRAISAV  250 (266)
T ss_pred             -CCC---CHHHHHHHHH------HCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCCHHHHHHHHHHH
T ss_conf             -999---9899999998------479878995788889889999999999975994665261023579899999999998


Q ss_pred             H
Q ss_conf             9
Q gi|254780975|r  217 K  217 (224)
Q Consensus       217 ~  217 (224)
                      -
T Consensus       251 V  251 (266)
T PRK07226        251 V  251 (266)
T ss_pred             H
T ss_conf             5


No 376
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=72.75  E-value=7.8  Score=19.24  Aligned_cols=21  Identities=5%  Similarity=0.240  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHCCCCEEEE
Q ss_conf             357789986543138652698
Q gi|254780975|r  154 TIPKIRQAKALIGKRSISLEV  174 (224)
Q Consensus       154 ~l~kI~~l~~~~~~~~~~I~v  174 (224)
                      .-+.+.++++++.+.++++.|
T Consensus       191 ~~e~~~~~~~i~~~~G~~v~I  211 (213)
T PRK10076        191 SSADVATMREMAERAGFQVTV  211 (213)
T ss_pred             CHHHHHHHHHHHHHCCCEEEE
T ss_conf             999999999999966985884


No 377
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.  The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=72.44  E-value=8  Score=19.19  Aligned_cols=26  Identities=23%  Similarity=0.400  Sum_probs=12.5

Q ss_pred             CCCCHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             64215899986776498259985233
Q gi|254780975|r   95 SSPHIRRSLRTIHAMGKKTGVAINPE  120 (224)
Q Consensus        95 ~~~~~~~~i~~i~~~g~k~Giai~p~  120 (224)
                      .-+++...++.+++.|.+.-+.+.|.
T Consensus        64 ~FPdp~~mi~~L~~~G~~~~~~v~P~   89 (319)
T cd06591          64 RFPDPKAMVRELHEMNAELMISIWPT   89 (319)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf             18999999999997899899994688


No 378
>pfam02593 DUF166 Uncharacterized ArCR, COG1810.
Probab=72.20  E-value=8.1  Score=19.16  Aligned_cols=124  Identities=15%  Similarity=0.214  Sum_probs=65.8

Q ss_pred             CCHHHHHHHHHCCCCEEEE-------EEEEEECCHHHHHHCCCCCCEEEEECCCCCCH-HHHHHHHHHCCCEEEEEE--E
Q ss_conf             1789999864125641685-------67885120336764047760799970664215-899986776498259985--2
Q gi|254780975|r   49 FGADVIRSLRSYSDSVFDC-------HLMISSIDSHINIIADAGCDIITFHPESSPHI-RRSLRTIHAMGKKTGVAI--N  118 (224)
Q Consensus        49 ~~~~~i~~i~~~t~~~~dv-------HLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~-~~~i~~i~~~g~k~Giai--~  118 (224)
                      +|-..++.|+++++.-+.+       ---+++|+.|++++.+  +|++.. +--.+|+ ......+++.|.++-|+=  .
T Consensus         8 yGeR~~~~i~~~~~~~v~~~~~pe~l~e~Ie~pee~Lp~~~~--~Dl~i~-y~lhPDl~~~l~~~~~e~g~kalIvp~~~   84 (215)
T pfam02593         8 YGERAVENILNYFDFCVIVLEYPEELPEFIEDPEEYLPEIPE--ADLVIA-YGLHPDLTLELAEIAAETGIKALIVPAEA   84 (215)
T ss_pred             CHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCCCCCC--CCEEEE-ECCCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             028999999864894299961776464323687886566778--768999-43595079999999986499889974688


Q ss_pred             CCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             3334478998862014028998306776533220135778998654313865269815899
Q gi|254780975|r  119 PETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT  179 (224)
Q Consensus       119 p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn  179 (224)
                      |.-....+++-++... +-+-+=+|-++=+   +.-...++++-+.+.+..+.+.|++|.-
T Consensus        85 ~~g~~~~lk~~~e~~g-~~~~~P~~~CsL~---~~~~p~i~~F~~~FG~P~~ev~v~~~~I  141 (215)
T pfam02593        85 PKGLRKGLKEQLEEFG-VEVEFPEPFCSLE---PVGNPVIDEFAERFGRPELEVEVEDGKI  141 (215)
T ss_pred             CCCHHHHHHHHHHHCC-CEEECCCCCCCCC---CCCCHHHHHHHHHHCCCEEEEEECCCEE
T ss_conf             6212899999999759-7387787655788---9888669999998199669999749949


No 379
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=72.08  E-value=8.1  Score=19.14  Aligned_cols=198  Identities=13%  Similarity=0.228  Sum_probs=117.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEE--CCEECCC-----------------------CCCCHHHHHHHHHCCCCEEEE
Q ss_conf             258899999999999659989999734--2634584-----------------------341789999864125641685
Q gi|254780975|r   13 AADFSRLGEEISNITKAGAKQIHFDVM--DGCFVPN-----------------------ISFGADVIRSLRSYSDSVFDC   67 (224)
Q Consensus        13 ~~d~~~l~~~i~~l~~~~~d~iHiDIm--Dg~fvpn-----------------------~~~~~~~i~~i~~~t~~~~dv   67 (224)
                      ..|+....+.++...++|+|.+-+-..  |.-++|+                       +.|+.+....+.++.+ ...+
T Consensus        12 ~Gdl~~Ak~LI~~A~~sGadaVKFQ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~kk~els~~~~~~L~~~~~-~~gi   90 (329)
T TIGR03569        12 NGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCE-SKGI   90 (329)
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH-HHCC
T ss_conf             780999999999999949699993078711327811030330126898886199999871489999999999999-7299


Q ss_pred             EEEEEECC-HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHH---HHHH-----CCEEEE
Q ss_conf             67885120-33676404776079997066421589998677649825998523334478998---8620-----140289
Q gi|254780975|r   68 HLMISSID-SHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILED---VIDE-----IDMILI  138 (224)
Q Consensus        68 HLMv~~P~-~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~---~l~~-----~D~vli  138 (224)
                      .+++.--. +-++.+.+.|++.+=++.-...+.. .++++-+.+..+=++....| .++++.   ++..     .+.+++
T Consensus        91 ~~~~s~fd~~s~~~l~~~~~~~~KIaS~d~~n~~-Li~~i~~~~kpiiiStG~s~-~~EI~~av~~~~~~~~~~~~i~ll  168 (329)
T TIGR03569        91 EFLSTPFDLESADFLEDLGVPRFKIPSGEITNAP-LLKKIARFGKPVILSTGMAT-LEEIEAAVGVLRDAGTPDSNITLL  168 (329)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCCCCHH-HHHHHHHHCCCEEEECCCCH-HHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             2998969899999998649997997923105489-99999974897899678623-999999999999748865576886


Q ss_pred             EEEE--CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE-EECCCCHHHHHHHHHCCCCEEEEC----HHH-----HCCCCH
Q ss_conf             9830--6776533220135778998654313865269-815899889999996799899974----266-----378998
Q gi|254780975|r  139 MTVN--PGFGGQQLIESTIPKIRQAKALIGKRSISLE-VDGGVTSRNIKSLVQAGADLLVVG----SSF-----FNQKGE  206 (224)
Q Consensus       139 M~V~--PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~-vDGGvn~~~i~~l~~~Gad~~V~G----sai-----f~~~d~  206 (224)
                      .||.  |-    ++..--|.+|+.+++.++   +.+. -|=..+..........||.++=--    ...     .-+-+|
T Consensus       169 hC~s~YP~----~~~~~nL~~i~~lk~~f~---~~iG~SDHt~g~~~~~~Ava~GA~vIEKHfTldk~~~g~D~~~Sl~p  241 (329)
T TIGR03569       169 HCTTEYPA----PFEDVNLNAMDTLKEAFD---LPVGYSDHTLGIEAPIAAVALGATVIEKHFTLDKNLPGPDHKASLEP  241 (329)
T ss_pred             EECCCCCC----CHHHCCHHHHHHHHHHCC---CCEEECCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHCCCH
T ss_conf             43788999----937647899999999859---98684797898367999998699699987776899999967870999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999978
Q gi|254780975|r  207 ISYAKRLNDLKKSA  220 (224)
Q Consensus       207 ~~~~~~l~~l~~~a  220 (224)
                      .+..+-++.+++..
T Consensus       242 ~e~k~lv~~i~~~~  255 (329)
T TIGR03569       242 DELKEMVQGIRNVE  255 (329)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 380
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I).  TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=71.45  E-value=8.4  Score=19.05  Aligned_cols=72  Identities=21%  Similarity=0.424  Sum_probs=45.0

Q ss_pred             EEEEE-CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC----------CCCHHHHHHHHHCCCCEEEE----------
Q ss_conf             99830-6776533220135778998654313865269815----------89988999999679989997----------
Q gi|254780975|r  138 IMTVN-PGFGGQQLIESTIPKIRQAKALIGKRSISLEVDG----------GVTSRNIKSLVQAGADLLVV----------  196 (224)
Q Consensus       138 iM~V~-PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG----------Gvn~~~i~~l~~~Gad~~V~----------  196 (224)
                      +.+++ +-..|.-+   .++-+++++++..++++.+.+||          |+...++    ..|+|.+..          
T Consensus       130 lv~ient~e~G~v~---~~~el~~i~~~a~~~gl~lH~DGARl~nA~~a~g~~~~~~----~~~~Dsvs~~~sKglgap~  202 (338)
T cd06502         130 LVSLENTTEGGTVY---PLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTY----KSGVDSVSFCLSKGGGAPV  202 (338)
T ss_pred             EEEEEECCCCCEEC---CHHHHHHHHHHHHHCCCEEEECCCCEECEEECCCCCHHHH----HHHCCEEEEECCCCCCCCC
T ss_conf             79987312896312---7999999999999749726653653004454159998998----6418789996656677743


Q ss_pred             CHHHHCCCCHHHHHHHHHHH
Q ss_conf             42663789989999999999
Q gi|254780975|r  197 GSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       197 Gsaif~~~d~~~~~~~l~~l  216 (224)
                      ||-++++++.++.++++++.
T Consensus       203 gavl~g~~~~i~~a~~~rK~  222 (338)
T cd06502         203 GAVVVGNRDFIARARRRRKQ  222 (338)
T ss_pred             CEEEECCHHHHHHHHHHHHH
T ss_conf             24787788999999999986


No 381
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=71.28  E-value=8.5  Score=19.02  Aligned_cols=52  Identities=13%  Similarity=0.107  Sum_probs=29.5

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH-CCCCEE--EEEE
Q ss_conf             889999999999965998999973426345843417899998641-256416--8567
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS-YSDSVF--DCHL   69 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~-~t~~~~--dvHL   69 (224)
                      |...--+++.+|.++|++.+-+-+-|-.-+.++.   .+.+++++ ..+.|+  |+|.
T Consensus        43 D~~atv~Qi~~l~~aGceiVRvtvp~~~~A~al~---~I~~~l~~~~~~iPlvADIHF   97 (606)
T PRK00694         43 DVDGTVRQICALQEHGCDIVRVTVQGIKEAQACE---HIKERLIQQGISIPLVADIHF   97 (606)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH---HHHHHHHHCCCCCCEEEECCC
T ss_conf             6899999999999859998998779999998699---999998636999998866688


No 382
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930    In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys.    Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis.  ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate  Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=70.90  E-value=3.4  Score=21.56  Aligned_cols=141  Identities=19%  Similarity=0.309  Sum_probs=92.7

Q ss_pred             CHHHHHHHHH-CCCCEEEEEE-------EEEECCHHHHHH----CCCCCCEEEEECCCCCCHHH---HHHHHHHCCCEEE
Q ss_conf             7899998641-2564168567-------885120336764----04776079997066421589---9986776498259
Q gi|254780975|r   50 GADVIRSLRS-YSDSVFDCHL-------MISSIDSHINII----ADAGCDIITFHPESSPHIRR---SLRTIHAMGKKTG  114 (224)
Q Consensus        50 ~~~~i~~i~~-~t~~~~dvHL-------Mv~~P~~~i~~~----~~~g~d~i~~H~E~~~~~~~---~i~~i~~~g~k~G  114 (224)
                      +++.++.||+ .+|+|+--=|       +++.|.+.|+.|    .++|.|+.=+ ..+.+.+++   -+..+++.|.-+-
T Consensus       611 PWeRL~~lR~~vPN~lfQMLLRgANaVGYtnYPDNvv~~Fv~qa~~~GiD~FRv-FDsLN~l~~l~l~~dAv~~~gkv~E  689 (1169)
T TIGR01235       611 PWERLEDLRKEVPNILFQMLLRGANAVGYTNYPDNVVKKFVKQAAQSGIDIFRV-FDSLNWLENLKLGMDAVKEAGKVVE  689 (1169)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEC-CCCCCCCCCCHHHHHHHHHCCCEEE
T ss_conf             379999998546852468887541000024775348999999888468307870-0111332102016367775099799


Q ss_pred             EEE-------ECCCCHHHHHHHHHHCCEEE-----EEEEE--CCCCCCCCCC-HHHHHHHHHHHHHHCCCCEEEE----E
Q ss_conf             985-------23334478998862014028-----99830--6776533220-1357789986543138652698----1
Q gi|254780975|r  115 VAI-------NPETPVAILEDVIDEIDMIL-----IMTVN--PGFGGQQLIE-STIPKIRQAKALIGKRSISLEV----D  175 (224)
Q Consensus       115 iai-------~p~T~~~~i~~~l~~~D~vl-----iM~V~--PG~~Gq~f~~-~~l~kI~~l~~~~~~~~~~I~v----D  175 (224)
                      -||       +|.-+=-.|++|.+..+-+-     ++||.  .|-    +-| .+-..|.-||+..|  +++|.+    =
T Consensus       690 AAicYtGDil~~~r~KYdL~YYt~lA~eL~~aGaHIL~iKDMAGl----LKP~AAk~L~~ALre~~P--D~PiH~HTHDt  763 (1169)
T TIGR01235       690 AAICYTGDILDPARKKYDLKYYTNLAEELVKAGAHILGIKDMAGL----LKPAAAKLLIKALREKIP--DLPIHLHTHDT  763 (1169)
T ss_pred             EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHCC----CHHHHHHHHHHHHHHCCC--CCCEEEECCCC
T ss_conf             997520032688897437788999999999709803430101124----428999999999973279--98568626661


Q ss_pred             CCCCHHHHHHHHHCCCCEEEEC
Q ss_conf             5899889999996799899974
Q gi|254780975|r  176 GGVTSRNIKSLVQAGADLLVVG  197 (224)
Q Consensus       176 GGvn~~~i~~l~~~Gad~~V~G  197 (224)
                      -|.---+...+.+||||++=+-
T Consensus       764 SG~ava~~~aaveAGvDvvDvA  785 (1169)
T TIGR01235       764 SGAAVASMLAAVEAGVDVVDVA  785 (1169)
T ss_pred             HHHHHHHHHHHHHCCCCEEHHH
T ss_conf             2689999999987588611456


No 383
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=70.56  E-value=8.8  Score=18.92  Aligned_cols=138  Identities=14%  Similarity=0.198  Sum_probs=78.9

Q ss_pred             EEEEEE-CCHHHHHH-------CCCCCCEEEEECCCCC--------------------------CHHHHHHHHHHC-CC-
Q ss_conf             678851-20336764-------0477607999706642--------------------------158999867764-98-
Q gi|254780975|r   68 HLMISS-IDSHINII-------ADAGCDIITFHPESSP--------------------------HIRRSLRTIHAM-GK-  111 (224)
Q Consensus        68 HLMv~~-P~~~i~~~-------~~~g~d~i~~H~E~~~--------------------------~~~~~i~~i~~~-g~-  111 (224)
                      |-|+.+ -++.++.|       .++|.|-|-+|.-...                          -+.++++.||+. |. 
T Consensus       129 ~~mt~eeI~~ii~~f~~AA~~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~EIi~~Ir~~vg~~  208 (343)
T cd04734         129 KAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPD  208 (343)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             44899999999999999999999739988984457774699846985589967679888999899999999999981987


Q ss_pred             -EEEEEEECCC------CHHHH---HHHHHH---CCEEEEEEEECC-CCCC-----C-CCC--HHHHHHHHHHHHHHCCC
Q ss_conf             -2599852333------44789---988620---140289983067-7653-----3-220--13577899865431386
Q gi|254780975|r  112 -KTGVAINPET------PVAIL---EDVIDE---IDMILIMTVNPG-FGGQ-----Q-LIE--STIPKIRQAKALIGKRS  169 (224)
Q Consensus       112 -k~Giai~p~T------~~~~i---~~~l~~---~D~vliM~V~PG-~~Gq-----~-f~~--~~l~kI~~l~~~~~~~~  169 (224)
                       -+|+=+++..      ..++.   .+.|..   +|++.+=+.... ..+.     + ..+  ..++-.+++|+   ..+
T Consensus       209 f~i~~Ris~~~~~~~g~~~~e~~~~~~~l~~~G~vD~l~vs~g~~~~~~~~~~~~p~~~~~~g~~~~~a~~ik~---~~~  285 (343)
T cd04734         209 FIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQ---AVD  285 (343)
T ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHH---HCC
T ss_conf             76158867623568989989999999999966997689965675433222110068766776434889999999---729


Q ss_pred             CEEEEECCC-CHHHHHHHHHCC-CCEEEECHHHHCCCCHHH
Q ss_conf             526981589-988999999679-989997426637899899
Q gi|254780975|r  170 ISLEVDGGV-TSRNIKSLVQAG-ADLLVVGSSFFNQKGEIS  208 (224)
Q Consensus       170 ~~I~vDGGv-n~~~i~~l~~~G-ad~~V~Gsaif~~~d~~~  208 (224)
                      ..+.+-||+ +.+.+.++++.| +|.+..|..+.-+||...
T Consensus       286 ~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ladPd~v~  326 (343)
T cd04734         286 LPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVA  326 (343)
T ss_pred             CCEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCCCHHH
T ss_conf             85999799899999999998799621697899997811999


No 384
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=70.39  E-value=8.9  Score=18.90  Aligned_cols=74  Identities=20%  Similarity=0.434  Sum_probs=49.1

Q ss_pred             CCEEEEEEEE-CCCC----CCCCCCHHHHHHHHHHHHHH-----CCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHH--
Q ss_conf             1402899830-6776----53322013577899865431-----3865269815899889999996799899974266--
Q gi|254780975|r  133 IDMILIMTVN-PGFG----GQQLIESTIPKIRQAKALIG-----KRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSF--  200 (224)
Q Consensus       133 ~D~vliM~V~-PG~~----Gq~f~~~~l~kI~~l~~~~~-----~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai--  200 (224)
                      -+++.+.+-+ -|.+    |..+...=+.-+.++..+-.     +.++.+..+|+=..+.++.|.+.|+.+++.|+-+  
T Consensus        84 ~~~vv~i~sd~~G~GddeLG~~Lmk~Fl~tL~e~~~lP~~iif~N~GVkLt~~~s~~le~Lk~Le~~GVeIl~CGtCLd~  163 (194)
T TIGR03527        84 GKLVVVITSDKLGEGDEELGRILMKGFIYTLSELDPLPKRILFVNGGVKLTTEGSEVLEDLKELEKKGVEILSCGTCLDF  163 (194)
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCHHHHHHHHHHHCCCEEEECHHHHHH
T ss_conf             88899994576778808999999999999987356677789998483799518972799999999879989986315866


Q ss_pred             HCCCCH
Q ss_conf             378998
Q gi|254780975|r  201 FNQKGE  206 (224)
Q Consensus       201 f~~~d~  206 (224)
                      |+-.|.
T Consensus       164 y~L~dk  169 (194)
T TIGR03527       164 YGLKDK  169 (194)
T ss_pred             HCCCCC
T ss_conf             285100


No 385
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain.  TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor.  It contains a unique flavin, in the form of a 6-S-cysteinyl FMN  which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=70.13  E-value=9  Score=18.87  Aligned_cols=139  Identities=15%  Similarity=0.111  Sum_probs=78.4

Q ss_pred             EEEEEEEC-CHHHHHH-------CCCCCCEEEEECCC-----------C-----------C----CHHHHHHHHHHC-CC
Q ss_conf             56788512-0336764-------04776079997066-----------4-----------2----158999867764-98
Q gi|254780975|r   67 CHLMISSI-DSHINII-------ADAGCDIITFHPES-----------S-----------P----HIRRSLRTIHAM-GK  111 (224)
Q Consensus        67 vHLMv~~P-~~~i~~~-------~~~g~d~i~~H~E~-----------~-----------~----~~~~~i~~i~~~-g~  111 (224)
                      .|-|+.+= ...++.|       .++|.|-|-+|.-+           +           +    -+.++++.+|+. |-
T Consensus       137 ~r~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIHaahGYLl~qFlSp~~N~RtDeYGGS~enR~Rf~~Eii~aVr~~vg~  216 (370)
T cd02929         137 AREMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGD  216 (370)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             86689999999999999999999985989899771135599973477457877746898899989999999999997199


Q ss_pred             --EEEEEEECCC--------CHHHHHHHHH----HCCEEEEEEEECC-CCCC-CCCCH--HHHHHHHHHHHHHCCCCEEE
Q ss_conf             --2599852333--------4478998862----0140289983067-7653-32201--35778998654313865269
Q gi|254780975|r  112 --KTGVAINPET--------PVAILEDVID----EIDMILIMTVNPG-FGGQ-QLIES--TIPKIRQAKALIGKRSISLE  173 (224)
Q Consensus       112 --k~Giai~p~T--------~~~~i~~~l~----~~D~vliM~V~PG-~~Gq-~f~~~--~l~kI~~l~~~~~~~~~~I~  173 (224)
                        -+|+=++++.        ..+....++.    .+|++.+-....+ ..+. .|.+.  .++-.+.+|+.   .+..+.
T Consensus       217 df~i~~R~s~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~vs~g~~~~~~~~~~~~~~g~~~~~~~~ik~~---~~~Pvi  293 (370)
T cd02929         217 DCAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQV---TSKPVV  293 (370)
T ss_pred             CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCCEE
T ss_conf             87599998941256889998889999999997365797998855556656777767864365999999986---088089


Q ss_pred             EECCCC-HHHHHHHHHCC-CCEEEECHHHHCCCCHHH
Q ss_conf             815899-88999999679-989997426637899899
Q gi|254780975|r  174 VDGGVT-SRNIKSLVQAG-ADLLVVGSSFFNQKGEIS  208 (224)
Q Consensus       174 vDGGvn-~~~i~~l~~~G-ad~~V~Gsaif~~~d~~~  208 (224)
                      +=||++ .+.+.++++.| +|.+..|..++-+||...
T Consensus       294 ~vG~i~~p~~ae~~l~~G~aD~V~~gR~llaDPd~~~  330 (370)
T cd02929         294 GVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPK  330 (370)
T ss_pred             EECCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHH
T ss_conf             9789799999999998799426453479876953999


No 386
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=69.90  E-value=9.1  Score=18.83  Aligned_cols=126  Identities=21%  Similarity=0.298  Sum_probs=70.1

Q ss_pred             EEECCHHHHHHCCCCCCEEEEECCCCC-----CHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHHHCC--EEEEEEE-
Q ss_conf             851203367640477607999706642-----158999867764982-5998523334478998862014--0289983-
Q gi|254780975|r   71 ISSIDSHINIIADAGCDIITFHPESSP-----HIRRSLRTIHAMGKK-TGVAINPETPVAILEDVIDEID--MILIMTV-  141 (224)
Q Consensus        71 v~~P~~~i~~~~~~g~d~i~~H~E~~~-----~~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~~~D--~vliM~V-  141 (224)
                      ..-|..+++.+..+|.|.+++==.++-     -+.++++.+++.|+. +|..-+.   -+...+.+-.++  .|-+++. 
T Consensus        59 f~~~~~~~~~L~~~G~d~~slANNH~~D~G~~Gl~~Ti~~L~~~gi~~~G~g~~~---~~a~~p~~~~~~g~~va~l~~t  135 (239)
T smart00854       59 FRAPPENAAALKAAGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIAHVGAGRNL---AEARKPAIVEVKGIKIALLAYT  135 (239)
T ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCH---HHCCCCEEEEECCEEEEEEEEE
T ss_conf             0299999999998299989931763431208999999999998699615898995---7737828999899899999987


Q ss_pred             ---ECCCC------CCC-CCCHHHHHH-HHHHHHHHCCCCE-EEEECCCC---------HHHHHHHHHCCCCEEEECHH
Q ss_conf             ---06776------533-220135778-9986543138652-69815899---------88999999679989997426
Q gi|254780975|r  142 ---NPGFG------GQQ-LIESTIPKI-RQAKALIGKRSIS-LEVDGGVT---------SRNIKSLVQAGADLLVVGSS  199 (224)
Q Consensus       142 ---~PG~~------Gq~-f~~~~l~kI-~~l~~~~~~~~~~-I~vDGGvn---------~~~i~~l~~~Gad~~V~Gsa  199 (224)
                         ++++.      |.. ..+...+++ +++++++.+.++. +.+-.|..         .+.+..+.++|||.++....
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~k~~~D~vIv~~HwG~E~~~~p~~~q~~~a~~lid~GaD~IiGhHp  214 (239)
T smart00854      136 YGTNNGWAASKDRPGVALLPDLDREKILADIARARKKADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHP  214 (239)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             0778864377899871215701799999999988527999999930157787799999999999999769999992899


No 387
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=69.48  E-value=9.3  Score=18.78  Aligned_cols=155  Identities=13%  Similarity=0.121  Sum_probs=94.9

Q ss_pred             HHHHHHHHCC--CCEEEEEEEEEECCHHHHHHCC---CCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHH
Q ss_conf             9999864125--6416856788512033676404---7760799970664215899986776498259985233344789
Q gi|254780975|r   52 DVIRSLRSYS--DSVFDCHLMISSIDSHINIIAD---AGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAIL  126 (224)
Q Consensus        52 ~~i~~i~~~t--~~~~dvHLMv~~P~~~i~~~~~---~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i  126 (224)
                      +.++.+++..  ..++.+-....+++..+++-.+   .-.+.+.+-.-.+..=.+.++.+++.|+++-+..- .|.-..+
T Consensus        42 ~~l~~i~~~i~~~~~ls~qv~~~d~~~mi~~a~~i~~~~~~nv~VKIP~t~~Glkai~~L~~~gi~vn~Tav-fs~~Qa~  120 (222)
T PRK12656         42 ERIREVREIIGDEASIHVQVVAQDYEGILKDAAEIRRQCGDDVYIKVPVTPAGLAAIKTLKAEGYHITATAI-YTTFQGL  120 (222)
T ss_pred             HHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-CCHHHHH
T ss_conf             999999998299988899976398999999999999855767899668878899999999975986568872-7999999


Q ss_pred             HHHHHHCCEEEEEEE---ECCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCHHHHHHHHHCCCCEEEECHHH-
Q ss_conf             988620140289983---06776533220135778998654313865--269815899889999996799899974266-
Q gi|254780975|r  127 EDVIDEIDMILIMTV---NPGFGGQQLIESTIPKIRQAKALIGKRSI--SLEVDGGVTSRNIKSLVQAGADLLVVGSSF-  200 (224)
Q Consensus       127 ~~~l~~~D~vliM~V---~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~--~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai-  200 (224)
                      .-...-.+||-...-   +-|..       ..+-|+++++.+.+++.  +|-+--==|.+++.++..+|+|.+.+...+ 
T Consensus       121 ~Aa~aGA~yvsPf~GRi~d~G~D-------g~~~i~~i~~~~~~~~~~tkIL~ASiR~~~~v~~a~~~G~d~iTipp~v~  193 (222)
T PRK12656        121 LAIEAGADYLAPYYNRMENLNID-------SEAVIGQLAEAINRENSNSKILAASFKNVAQVNKAFALGAQAVTAGPDVF  193 (222)
T ss_pred             HHHHCCCCEEEECCCCHHHCCCC-------CHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCHHHH
T ss_conf             99986998999714648754999-------28999999999985599961986526899999999986999998599999


Q ss_pred             ---HCCCCHHHHHHHHH
Q ss_conf             ---37899899999999
Q gi|254780975|r  201 ---FNQKGEISYAKRLN  214 (224)
Q Consensus       201 ---f~~~d~~~~~~~l~  214 (224)
                         |..+-..+..+.+.
T Consensus       194 ~~l~~hp~T~~~~~~F~  210 (222)
T PRK12656        194 EAAFAMPSIQKAVDDFG  210 (222)
T ss_pred             HHHHCCCCHHHHHHHHH
T ss_conf             99974901799999999


No 388
>KOG0538 consensus
Probab=68.67  E-value=9.6  Score=18.67  Aligned_cols=111  Identities=16%  Similarity=0.207  Sum_probs=68.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             79997066421589998677649825998523334478998862014028998306776533220135778998654313
Q gi|254780975|r   88 IITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK  167 (224)
Q Consensus        88 ~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~  167 (224)
                      ++.-....+-..+ .|+|+|+.---+-+.=.--|--+...-.-.-++.|.+ + |-|--.+.+.+.+++-+.|+-+....
T Consensus       201 ~~~~~id~Sl~W~-Di~wLr~~T~lPIvvKGilt~eDA~~Ave~G~~GIIV-S-NHGgRQlD~vpAtI~~L~Evv~aV~~  277 (363)
T KOG0538         201 YVSSQIDPSLSWK-DIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIV-S-NHGGRQLDYVPATIEALPEVVKAVEG  277 (363)
T ss_pred             HHHCCCCCCCCHH-HHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEE-E-CCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             6423788777742-4699985275876998311438799999808865998-5-78753257664118879999998628


Q ss_pred             CCCEEEEECCCCHHH-HHHHHHCCCCEEEECH-HHHC
Q ss_conf             865269815899889-9999967998999742-6637
Q gi|254780975|r  168 RSISLEVDGGVTSRN-IKSLVQAGADLLVVGS-SFFN  202 (224)
Q Consensus       168 ~~~~I~vDGGvn~~~-i~~l~~~Gad~~V~Gs-aif~  202 (224)
                       .+++..||||+..| +-+....||..+-+|. .+|+
T Consensus       278 -ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~g  313 (363)
T KOG0538         278 -RIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWG  313 (363)
T ss_pred             -CEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCEEE
T ss_conf             -547997267335427999985167368856721020


No 389
>TIGR00433 bioB biotin synthase; InterPro: IPR002684   Biotin synthase 2.8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions .    Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine .  ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process.
Probab=68.53  E-value=7.1  Score=19.51  Aligned_cols=130  Identities=18%  Similarity=0.229  Sum_probs=75.5

Q ss_pred             HHHHHHCCCCCCEEEEECC-CC-------------CCHHHHHHHHHHCCCEE--EEEEECCCCHHHHHHHH-------HH
Q ss_conf             3367640477607999706-64-------------21589998677649825--99852333447899886-------20
Q gi|254780975|r   76 SHINIIADAGCDIITFHPE-SS-------------PHIRRSLRTIHAMGKKT--GVAINPETPVAILEDVI-------DE  132 (224)
Q Consensus        76 ~~i~~~~~~g~d~i~~H~E-~~-------------~~~~~~i~~i~~~g~k~--Giai~p~T~~~~i~~~l-------~~  132 (224)
                      ...+.+.+||.|+..==.| +.             +|=..+++.+|+.|.++  |=-+..+=+.++-..++       +.
T Consensus       167 eqa~~LKdAGld~YNHNl~~TS~~~y~~I~sThty~DR~~T~~~~k~aGl~~CsGGI~GlgEt~~DrI~l~~~L~~L~p~  246 (350)
T TIGR00433       167 EQAKQLKDAGLDRYNHNLDETSQEYYSKIISTHTYDDRVDTVKNAKEAGLKVCSGGILGLGETWEDRIGLALALANLSPE  246 (350)
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCC
T ss_conf             99998886388611167367878766873432307767999999997388724462345898889999999997527767


Q ss_pred             CCE--EEEEE---EEC----CCC--CCCCCC-HHHHHHHHHHHHHHCCCCEEEEECC--CCHHHHHH----HHHCCCCEE
Q ss_conf             140--28998---306----776--533220-1357789986543138652698158--99889999----996799899
Q gi|254780975|r  133 IDM--ILIMT---VNP----GFG--GQQLIE-STIPKIRQAKALIGKRSISLEVDGG--VTSRNIKS----LVQAGADLL  194 (224)
Q Consensus       133 ~D~--vliM~---V~P----G~~--Gq~f~~-~~l~kI~~l~~~~~~~~~~I~vDGG--vn~~~i~~----l~~~Gad~~  194 (224)
                      +|-  |.++-   ++|    =..  -++.++ +.+.-|.-+|-..|+.-  |-+-||  ++.....+    +..+|+|.+
T Consensus       247 peSvPiN~L~~~~GTP~~E~L~~~~~~~L~~~~~Lk~iA~ari~mP~~~--iRlagGR~~~m~e~~~kea~~~~ag~Nsi  324 (350)
T TIGR00433       247 PESVPINFLVKIEGTPAYEKLADGEVKKLSADDALKTIALARIIMPKAE--IRLAGGREVNMKELQQKEAMCFMAGANSI  324 (350)
T ss_pred             CCEECCCCEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             8701113202688885344315888673388999999999886543110--01002514504767548999999842123


Q ss_pred             EECHHHHCCCCHH
Q ss_conf             9742663789989
Q gi|254780975|r  195 VVGSSFFNQKGEI  207 (224)
Q Consensus       195 V~Gsaif~~~d~~  207 (224)
                      ++|-++-....+.
T Consensus       325 f~G~yLtT~g~~~  337 (350)
T TIGR00433       325 FVGDYLTTTGQPP  337 (350)
T ss_pred             EECCCCCCCCCCC
T ss_conf             0464002486588


No 390
>pfam07722 Peptidase_C26 Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus.
Probab=68.13  E-value=9.9  Score=18.60  Aligned_cols=51  Identities=22%  Similarity=0.312  Sum_probs=38.0

Q ss_pred             HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEE----EECCCCCCCCCCH
Q ss_conf             998677649825998523334478998862014028998----3067765332201
Q gi|254780975|r  102 SLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMT----VNPGFGGQQLIES  153 (224)
Q Consensus       102 ~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~----V~PG~~Gq~f~~~  153 (224)
                      -++++...|..+ +.|-+.++.+.++.+++.+|-+++-+    |+|.+.|+...+.
T Consensus        29 Yv~~i~~aGg~p-v~iP~~~~~~~~~~~l~~~dGlll~GG~~di~P~~yg~~~~~~   83 (219)
T pfam07722        29 YVKAVEGAGGLP-VLLPILEDPEDLEALLDLVDGLLLTGGQSNVDPSLYGEEPSPS   83 (219)
T ss_pred             HHHHHHHCCCEE-EEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             999999859999-9978999989999999767989985988767822146776866


No 391
>pfam01964 ThiC ThiC family. ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine biosynthesis. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.
Probab=68.01  E-value=9.9  Score=18.59  Aligned_cols=186  Identities=21%  Similarity=0.275  Sum_probs=90.5

Q ss_pred             EEECHHH----HCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEE----------EE--
Q ss_conf             1881706----3258899999999999659989999734263458434178999986412564168----------56--
Q gi|254780975|r    5 IQIVPSI----LAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD----------CH--   68 (224)
Q Consensus         5 ~~IspSi----l~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~d----------vH--   68 (224)
                      .||-++|    .+.|...=.+.++...++|+|.    |||=.--.++   .++-+.+-+.+..|+-          .|  
T Consensus        60 tKVNaNIGtS~~~~d~~~E~~K~~~A~~~GADt----vMDLStGgdl---~~iR~~il~~s~vpvGTVPiYqa~~~~~~~  132 (421)
T pfam01964        60 TKVNANIGTSADISDIDEEVEKAKVAIKYGADT----VMDLSTGGDL---DEIRRAILENSPVPVGTVPIYQAAERKGGS  132 (421)
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCE----EEECCCCCCH---HHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
T ss_conf             589602268988798899999999999839985----7765777466---999999997399867761499999996599


Q ss_pred             EEEEECCH---HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEE----------------EC-CCCHHHHHH
Q ss_conf             78851203---36764047760799970664215899986776498259985----------------23-334478998
Q gi|254780975|r   69 LMISSIDS---HINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAI----------------NP-ETPVAILED  128 (224)
Q Consensus        69 LMv~~P~~---~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai----------------~p-~T~~~~i~~  128 (224)
                      +.-.+++.   .+++=.+-|+|++|+|+--+.+   .+..+++.+-..|++=                || .+.++.+-.
T Consensus       133 ~~~mt~d~~~~~ie~qa~~GVDfmTiH~Gi~~~---~~~~~~~~~R~~giVSRGGs~la~WM~~n~~ENPlye~fD~lle  209 (421)
T pfam01964       133 VVDMTEDDLFDVIEEQAKDGVDFMTIHAGVTRE---TLERLKRSGRLTGIVSRGGSFLAAWMLHNGKENPLYEHFDYLLE  209 (421)
T ss_pred             HHHCCHHHHHHHHHHHHHHCCCEEEECCCHHHH---HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             454999999999999997288778740001599---99999745873460146628999999974765834660999999


Q ss_pred             HHHHCCEEEEEE--EECCCCCCCCCCHHHH---HHHHHHHHHHCCCCEEEEEC--CCCHHHH----HHH--HHCCCCEEE
Q ss_conf             862014028998--3067765332201357---78998654313865269815--8998899----999--967998999
Q gi|254780975|r  129 VIDEIDMILIMT--VNPGFGGQQLIESTIP---KIRQAKALIGKRSISLEVDG--GVTSRNI----KSL--VQAGADLLV  195 (224)
Q Consensus       129 ~l~~~D~vliM~--V~PG~~Gq~f~~~~l~---kI~~l~~~~~~~~~~I~vDG--Gvn~~~i----~~l--~~~Gad~~V  195 (224)
                      ++..-|..+=++  ..||.---.-...-+.   -+-+|-+.-.++++...|.|  -|-.+.|    +..  .-.||-.+|
T Consensus       210 I~~~yDVtlSLGDglRPG~i~Da~D~aQ~~El~~lgeL~~rA~e~gVQvMVEGPGHvPl~qI~~nv~l~K~lc~~APfYv  289 (421)
T pfam01964       210 ILKEYDVTLSLGDGLRPGCIADATDRAQIQELITLGELTKRAWEAGVQVMIEGPGHVPLNQIEANVKLQKELCHGAPFYV  289 (421)
T ss_pred             HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             99974926860477798753568718899999999999999998199889879997778999999999998617998010


Q ss_pred             ECHHH
Q ss_conf             74266
Q gi|254780975|r  196 VGSSF  200 (224)
Q Consensus       196 ~Gsai  200 (224)
                      +|--+
T Consensus       290 LGPLv  294 (421)
T pfam01964       290 LGPLV  294 (421)
T ss_pred             CCCCC
T ss_conf             28610


No 392
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=67.09  E-value=10  Score=18.47  Aligned_cols=156  Identities=11%  Similarity=0.052  Sum_probs=96.8

Q ss_pred             HHHHHHHHHCC--CCEEEEEEEEEECCHHHHHHC---CCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHH
Q ss_conf             89999864125--641685678851203367640---4776079997066421589998677649825998523334478
Q gi|254780975|r   51 ADVIRSLRSYS--DSVFDCHLMISSIDSHINIIA---DAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAI  125 (224)
Q Consensus        51 ~~~i~~i~~~t--~~~~dvHLMv~~P~~~i~~~~---~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~  125 (224)
                      .+.++.+++..  +.++.+-....+++..+++-.   ..+. .+.+-.-.+.+-.+.++.+++.|+++-+..- .|+-..
T Consensus        40 ~~~~~~i~~~~~~~~~l~~ev~~~d~~~m~~~a~~l~~~~~-~ivVKIP~t~~Gl~ai~~L~~~gi~vn~Tav-ys~~Qa  117 (220)
T PRK12655         40 WEVLPRLQKAIGGEGILFAQTMSRDAQGMVEEAKRLRNAIP-GIVVKIPVTAEGLAAIKKLKKEGIPTLGTAV-YSAAQG  117 (220)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCC-CEEEECCCCHHHHHHHHHHHHCCCCEEEEEC-CCHHHH
T ss_conf             99999999982899978999955999999999999997478-7399868877899999999986997899851-789999


Q ss_pred             HHHHHHHCCEEEEEEE---ECCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf             9988620140289983---06776533220135778998654313865--269815899889999996799899974266
Q gi|254780975|r  126 LEDVIDEIDMILIMTV---NPGFGGQQLIESTIPKIRQAKALIGKRSI--SLEVDGGVTSRNIKSLVQAGADLLVVGSSF  200 (224)
Q Consensus       126 i~~~l~~~D~vliM~V---~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~--~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai  200 (224)
                      +---..-.+||-.-.-   +-|..       .++-|+++++++...++  +|-+--==|.+++.++..+|+|.+.+.-.+
T Consensus       118 ~~Aa~aGA~YvsPyvGR~~d~G~D-------g~~~i~~i~~~~~~~~~~tkILaASiR~~~~v~~a~~~Gad~vTipp~v  190 (220)
T PRK12655        118 LLAALAGAKYVAPYVNRVDAQGGD-------GIRMVQELQTLLEMHAPESMVLAASFKTPRQALDCLLAGCQSITLPLDV  190 (220)
T ss_pred             HHHHHCCCCEEEEEHHHHHHCCCC-------HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECHHH
T ss_conf             999985997896321057555898-------4899999999999759996899983899999999998699999819999


Q ss_pred             ----HCCCCHHHHHHHHHH
Q ss_conf             ----378998999999999
Q gi|254780975|r  201 ----FNQKGEISYAKRLND  215 (224)
Q Consensus       201 ----f~~~d~~~~~~~l~~  215 (224)
                          |+.+-.....+.+.+
T Consensus       191 ~~~l~~~plT~~~~~~F~~  209 (220)
T PRK12655        191 AQQMLNTPAVESAIEKFEQ  209 (220)
T ss_pred             HHHHHCCCHHHHHHHHHHH
T ss_conf             9999769028999999999


No 393
>pfam03102 NeuB NeuB family. NeuB is the prokaryotic N-acetylneuraminic acid (Neu5Ac) synthase. It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesize the 9-phosphate form, Neu5Ac-9-P, and utilize ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.
Probab=66.98  E-value=10  Score=18.45  Aligned_cols=190  Identities=14%  Similarity=0.207  Sum_probs=108.6

Q ss_pred             HHHHHHCCCCEEEEEEEC--CEEC-----------------------CCCCCCHHHHHHHHHCCCCEEEEEEEEEECC-H
Q ss_conf             999996599899997342--6345-----------------------8434178999986412564168567885120-3
Q gi|254780975|r   23 ISNITKAGAKQIHFDVMD--GCFV-----------------------PNISFGADVIRSLRSYSDSVFDCHLMISSID-S   76 (224)
Q Consensus        23 i~~l~~~~~d~iHiDImD--g~fv-----------------------pn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~-~   76 (224)
                      |+...++|+|.+-+-.-+  .-+.                       ..+.|+.+..+.|+++.+ ...+.+|+.--. +
T Consensus         2 I~~Ak~sGADaVKFQ~~~~d~~~~~~~~~~~y~~~~~~~~~~~~e~~kk~els~~~~~~l~~~~k-k~gi~f~~t~fd~~   80 (240)
T pfam03102         2 IDAAAEAGADAVKFQTFTADTLVSKNADKADYQIKNTWGGESQYELLKKLELPEEWHKELFEYCK-EKGIEFFSTPFDLE   80 (240)
T ss_pred             HHHHHHHCCCEEEEECCCHHHHCCCCCCCHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH-HCCCCEEECCCCHH
T ss_conf             78999819899998146689977803340230056887886499999982689999999999999-82996898989899


Q ss_pred             HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHH---CCEEEEEEEE--CCCCCCC
Q ss_conf             3676404776079997066421589998677649825998523334--4789988620---1402899830--6776533
Q gi|254780975|r   77 HINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETP--VAILEDVIDE---IDMILIMTVN--PGFGGQQ  149 (224)
Q Consensus        77 ~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~--~~~i~~~l~~---~D~vliM~V~--PG~~Gq~  149 (224)
                      -++.+.+.|++.+=++.-...+.. .++.+.+.+..+=++....|-  +.....++..   -+.+++.||.  |-    +
T Consensus        81 s~~~l~~l~~~~~KIaS~d~~n~~-Li~~i~k~~kpiiiSTG~s~~~eI~~~i~~~~~~~~~~i~llhCvS~YPt----~  155 (240)
T pfam03102        81 SVDFLESLGVPAYKIASGEITNLP-LLRYIAKTGKPVILSTGMATLEEIEEAVETLREAGNEDITLLHCTSEYPA----P  155 (240)
T ss_pred             HHHHHHHCCCCEEEECCCCCCCHH-HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC----C
T ss_conf             999887558886998988646589-99999973996899579888999999999999634567768665888999----7


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEE-EEECCCCHHHHHHHHHCCCCEEEECHHH---------HCCCCHHHHHHHHHHHHHH
Q ss_conf             22013577899865431386526-9815899889999996799899974266---------3789989999999999997
Q gi|254780975|r  150 LIESTIPKIRQAKALIGKRSISL-EVDGGVTSRNIKSLVQAGADLLVVGSSF---------FNQKGEISYAKRLNDLKKS  219 (224)
Q Consensus       150 f~~~~l~kI~~l~~~~~~~~~~I-~vDGGvn~~~i~~l~~~Gad~~V~Gsai---------f~~~d~~~~~~~l~~l~~~  219 (224)
                      ..+--|.+|+.+++.++   ..+ .-|=..+.+...-....||.++=--=.+         .-+-+|.+..+-++.+++.
T Consensus       156 ~~~~nL~~I~~lk~~f~---~~iG~SdHs~g~~~~~~A~~~GA~iiEKH~tl~~~~~g~D~~~Sl~~~e~~~~v~~ir~~  232 (240)
T pfam03102       156 FEDVNLRAIPTLKEAFG---VPVGYSDHTLGIEAPIAAVALGASVIEKHFTLDRNLPGPDHKASLEPDELKELVKDIRNV  232 (240)
T ss_pred             HHHHHHHHHHHHHHHCC---CCEEECCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf             46600999889998679---968847988970777999982993999876558999999556439999999999999999


Q ss_pred             HH
Q ss_conf             86
Q gi|254780975|r  220 AL  221 (224)
Q Consensus       220 a~  221 (224)
                      ..
T Consensus       233 ~~  234 (240)
T pfam03102       233 EK  234 (240)
T ss_pred             HH
T ss_conf             99


No 394
>PRK06739 pyruvate kinase; Validated
Probab=66.60  E-value=11  Score=18.41  Aligned_cols=154  Identities=12%  Similarity=0.119  Sum_probs=94.3

Q ss_pred             EEEEEEEEEECCHHHHHHCCCCCCEEEEECC-CCCCHHHHHHHHHHCC-CEEEEEEECCCC--HHHHHHHHHHCCEEEE-
Q ss_conf             1685678851203367640477607999706-6421589998677649-825998523334--4789988620140289-
Q gi|254780975|r   64 VFDCHLMISSIDSHINIIADAGCDIITFHPE-SSPHIRRSLRTIHAMG-KKTGVAINPETP--VAILEDVIDEIDMILI-  138 (224)
Q Consensus        64 ~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E-~~~~~~~~i~~i~~~g-~k~Giai~p~T~--~~~i~~~l~~~D~vli-  138 (224)
                      .++.--+++.=.+.++...+.|+|+|.+-+= +.+++.++-+.+++.+ ..++|--.-+|+  ++.+..++...|.|++ 
T Consensus       157 ~l~lp~LTekD~~dI~~a~~~~vD~valSFVrsa~DI~~lr~~l~~~~~~~~~IIaKIE~~~al~NldeIi~~sDgIMIA  236 (352)
T PRK06739        157 IVSLPAITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIA  236 (352)
T ss_pred             CCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCEEEEE
T ss_conf             66776688026999999987599999985779999999999999972688862799864998997699999855946996


Q ss_pred             ---EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC----------C---HHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             ---9830677653322013577899865431386526981589----------9---88999999679989997426637
Q gi|254780975|r  139 ---MTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV----------T---SRNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       139 ---M~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv----------n---~~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                         |+++-+..--+   ..=.+   +-+...+.+-.+.|-.-+          +   ...+....-.|+|.+.+..----
T Consensus       237 RGDLgvei~~e~vp---~~Qk~---Ii~~c~~~gkpvivATqmLeSM~~~p~PTRAEv~DVanav~dG~D~vmLs~ETA~  310 (352)
T PRK06739        237 RGDLGVELPYQFIP---LLQKM---MIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESAS  310 (352)
T ss_pred             CCCCCCCCCHHHHH---HHHHH---HHHHHHHCCCCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHCC
T ss_conf             58644636988989---99999---9999998299789963628876349988769999999999847988997220117


Q ss_pred             CCCHHHHHHHHHHHHHHHHHC
Q ss_conf             899899999999999978627
Q gi|254780975|r  203 QKGEISYAKRLNDLKKSALAI  223 (224)
Q Consensus       203 ~~d~~~~~~~l~~l~~~a~a~  223 (224)
                      .+.|.++.+.+......|+.+
T Consensus       311 G~yPv~~V~~m~~i~~~aE~~  331 (352)
T PRK06739        311 GEHPVESVSTLRLVSEFAEHV  331 (352)
T ss_pred             CCCHHHHHHHHHHHHHHHHHH
T ss_conf             979999999999999999876


No 395
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=66.60  E-value=11  Score=18.41  Aligned_cols=99  Identities=12%  Similarity=0.144  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCE-ECCC--------CCCCHH--------HHHH-HHHCC-CCEEEEEEEEEEC---
Q ss_conf             99999999999659989999734263-4584--------341789--------9998-64125-6416856788512---
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGC-FVPN--------ISFGAD--------VIRS-LRSYS-DSVFDCHLMISSI---   74 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~-fvpn--------~~~~~~--------~i~~-i~~~t-~~~~dvHLMv~~P---   74 (224)
                      .-+.++++.|.++|+++||+|=-.-. ++..        -+..++        .++. ++..+ +..+-+|+.--|-   
T Consensus       170 ~a~~~Ei~~L~~aG~~~IQiDep~~a~l~~~~~~~~~~~~~~~~~~l~~~~~~~~N~al~~~p~d~~i~~HiC~Gn~~~~  249 (370)
T PRK06520        170 KTYRDAVKAFYDAGCRYLQLDDTVWAYLCSDDERQQARERGDDPDNLQQIYARVINYAIAERPADLTITLHVCRGNFRST  249 (370)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
T ss_conf             99999999999879988987574165306877786776536899999999999999997089977489998767887877


Q ss_pred             -------CHHHHHH-CCCCCCEEEEECCCCCC-HHHHHHHHHHCCCEEEE
Q ss_conf             -------0336764-04776079997066421-58999867764982599
Q gi|254780975|r   75 -------DSHINII-ADAGCDIITFHPESSPH-IRRSLRTIHAMGKKTGV  115 (224)
Q Consensus        75 -------~~~i~~~-~~~g~d~i~~H~E~~~~-~~~~i~~i~~~g~k~Gi  115 (224)
                             ....+.+ .+.++|.+++.+++... -.+.+..+...+..+++
T Consensus       250 ~~~~g~Y~~i~~~l~~~~~vd~~~lE~d~~r~g~~e~L~~l~~~~k~vvl  299 (370)
T PRK06520        250 WISEGGYEPVAETLLGGVNVDAYFLEYDNERAGGFEPLRFLPKGNKQVVL  299 (370)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCCCCEEEE
T ss_conf             65566646679999843788858998447544542267756867877998


No 396
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839    This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=66.55  E-value=4.7  Score=20.68  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             58999867764982599852333447899886201402899830677653322013577899865431386526981589
Q gi|254780975|r   99 IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV  178 (224)
Q Consensus        99 ~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv  178 (224)
                      ...+++.+|+.|+.+-|=-+..||.+.+++.++.+|+.|+                  -||.+..-..     =++=|+=
T Consensus       147 ~~~LL~~c~~~gihTAvET~gft~~~~~~~~~~~~DLfL~------------------DiK~~D~~~H-----~~~tG~~  203 (305)
T TIGR02494       147 ALALLKACRERGIHTAVETSGFTPWETIEKVLPYVDLFLY------------------DIKHLDDERH-----KEVTGVD  203 (305)
T ss_pred             HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHH------------------HHHHCCCHHH-----HHHCCCC
T ss_conf             9999999975899467605568888999988887769987------------------2641180120-----5533898


Q ss_pred             C---HHHHHHHHHCC----CCEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9---88999999679----9899974266378998999999999999
Q gi|254780975|r  179 T---SRNIKSLVQAG----ADLLVVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       179 n---~~~i~~l~~~G----ad~~V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
                      |   .+|++.|.++|    ++++|==-.|=+-.|..+.++.+-++..
T Consensus       204 N~~IL~NL~~L~~~~~~GG~~v~iR~PvIpG~Nds~~~i~a~~~f~~  250 (305)
T TIGR02494       204 NELILENLEALLAAGKDGGKNVVIRIPVIPGFNDSEENIEAIAEFLR  250 (305)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             37899999999971788995589987204898989899999999999


No 397
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain.  FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2  is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=66.31  E-value=11  Score=18.37  Aligned_cols=98  Identities=16%  Similarity=0.217  Sum_probs=53.8

Q ss_pred             HHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCC
Q ss_conf             998677649825998523334478998862-01402899830677653322013577899865431--386526981589
Q gi|254780975|r  102 SLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIG--KRSISLEVDGGV  178 (224)
Q Consensus       102 ~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~--~~~~~I~vDGGv  178 (224)
                      .+.|+|+.-..+ +.+.-=...+.-..-.+ -+|.|.| | |-|--.-..-+.+++-+-++++..+  ...++|.+||||
T Consensus       204 di~~lr~~~~~p-livKGIl~~~DA~~A~~~G~dgIiV-S-NHGGRqLD~~~~~i~~Lp~I~~~~~av~~~~~v~~DgGi  280 (344)
T cd02922         204 DIKWLRKHTKLP-IVLKGVQTVEDAVLAAEYGVDGIVL-S-NHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGV  280 (344)
T ss_pred             HHHHHHHHCCCC-EEECCCCCHHHHHHHHHCCCCEEEE-E-CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             999999866997-0100257799999999659988997-1-886212578831899989999988985887089971885


Q ss_pred             CH-HHHHHHHHCCCCEEEECHH-HHC
Q ss_conf             98-8999999679989997426-637
Q gi|254780975|r  179 TS-RNIKSLVQAGADLLVVGSS-FFN  202 (224)
Q Consensus       179 n~-~~i~~l~~~Gad~~V~Gsa-if~  202 (224)
                      +. ..+-+....|||.+-+|.. +|.
T Consensus       281 R~G~DV~KAlALGA~aV~iGRp~l~g  306 (344)
T cd02922         281 RRGTDVLKALCLGAKAVGLGRPFLYA  306 (344)
T ss_pred             CCHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf             75789999997699989767899999


No 398
>KOG2335 consensus
Probab=66.02  E-value=11  Score=18.34  Aligned_cols=140  Identities=11%  Similarity=0.144  Sum_probs=79.8

Q ss_pred             CCEEEEEEEEEECCHHHHHH--CCCCCCEEEEECCC--------------CCC---HHHHHHHHHHC-CCEEEEEEECCC
Q ss_conf             64168567885120336764--04776079997066--------------421---58999867764-982599852333
Q gi|254780975|r   62 DSVFDCHLMISSIDSHINII--ADAGCDIITFHPES--------------SPH---IRRSLRTIHAM-GKKTGVAINPET  121 (224)
Q Consensus        62 ~~~~dvHLMv~~P~~~i~~~--~~~g~d~i~~H~E~--------------~~~---~~~~i~~i~~~-g~k~Giai~p~T  121 (224)
                      +-|+=|.+-.+||+..++..  +..-+|.|-+-+-+              ..+   +.+.++.++.. +.-+-+-|.-.-
T Consensus        73 D~PLIvQf~~ndp~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~  152 (358)
T KOG2335          73 DRPLIVQFGGNDPENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFV  152 (358)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEECCCHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             78669997479989999999986533472041589987888437726000238899999999998525998699998557


Q ss_pred             CHHHHHHHHHH-----CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHH-CCCCEE
Q ss_conf             44789988620-----14028998306776533220135778998654313865269815899-889999996-799899
Q gi|254780975|r  122 PVAILEDVIDE-----IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQ-AGADLL  194 (224)
Q Consensus       122 ~~~~i~~~l~~-----~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~-~Gad~~  194 (224)
                      +++.-..|+..     ++++.|.+-.+--.|..--+--++.|+.+|+..+.  +.+.+-|+|. .+-+..+.+ .|+|-+
T Consensus       153 d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~--ipviaNGnI~~~~d~~~~~~~tG~dGV  230 (358)
T KOG2335         153 DLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD--IPVIANGNILSLEDVERCLKYTGADGV  230 (358)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHHCCC--CCEEEECCCCCHHHHHHHHHHHCCCEE
T ss_conf             678789999999867986899936557762888887677999999974767--708950885768999999997587468


Q ss_pred             EECHHHHCC
Q ss_conf             974266378
Q gi|254780975|r  195 VVGSSFFNQ  203 (224)
Q Consensus       195 V~Gsaif~~  203 (224)
                      -+|.++..+
T Consensus       231 M~arglL~N  239 (358)
T KOG2335         231 MSARGLLYN  239 (358)
T ss_pred             EECCHHHCC
T ss_conf             860000038


No 399
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=65.89  E-value=11  Score=18.32  Aligned_cols=139  Identities=17%  Similarity=0.221  Sum_probs=67.0

Q ss_pred             CEEEEEEEEEECCHH---------HHHHCCCCCCE--EEEECCCCCCHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHH
Q ss_conf             416856788512033---------67640477607--99970664215899986776498--259985233344789988
Q gi|254780975|r   63 SVFDCHLMISSIDSH---------INIIADAGCDI--ITFHPESSPHIRRSLRTIHAMGK--KTGVAINPETPVAILEDV  129 (224)
Q Consensus        63 ~~~dvHLMv~~P~~~---------i~~~~~~g~d~--i~~H~E~~~~~~~~i~~i~~~g~--k~Giai~p~T~~~~i~~~  129 (224)
                      ...-+..|.-||..|         +++....|+.+  +++-+- ..+++...++|.+.|.  -.-+++.|+| ++.+...
T Consensus        90 ~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAG-IP~le~A~ElI~~L~~~G~~yv~fKPGt-IeqI~sv  167 (717)
T COG4981          90 RTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAG-IPSLEEAVELIEELGDDGFPYVAFKPGT-IEQIRSV  167 (717)
T ss_pred             CCCEEEEEEECHHHHHHCCCHHHHHHHHHHCCCCCCEEEEECC-CCCHHHHHHHHHHHHHCCCEEEEECCCC-HHHHHHH
T ss_conf             6211567986567866337767878999846997241797269-8848999999998764586168766772-9999999


Q ss_pred             HHH----CCEEEEEEEECCCCCCC--CCCHHHHHHHHHHHHHHCCCCEEEEECCCCH------------HHHHHHHHCCC
Q ss_conf             620----14028998306776533--2201357789986543138652698158998------------89999996799
Q gi|254780975|r  130 IDE----IDMILIMTVNPGFGGQQ--LIESTIPKIRQAKALIGKRSISLEVDGGVTS------------RNIKSLVQAGA  191 (224)
Q Consensus       130 l~~----~D~vliM~V~PG~~Gq~--f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~------------~~i~~l~~~Ga  191 (224)
                      +..    -.+=.+|-++-|-+|.-  |..----.+....+++...|+-+++-||+..            .+.-.+-..-.
T Consensus       168 i~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~  247 (717)
T COG4981         168 IRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPF  247 (717)
T ss_pred             HHHHHCCCCCCEEEEEECCCCCCCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCC
T ss_conf             99986089985699971576677555422020899999998457977999668768812112000541065429998874


Q ss_pred             CEEEECHHHHCC
Q ss_conf             899974266378
Q gi|254780975|r  192 DLLVVGSSFFNQ  203 (224)
Q Consensus       192 d~~V~Gsaif~~  203 (224)
                      |-+-.||+.--.
T Consensus       248 DGiLvGtaaMat  259 (717)
T COG4981         248 DGILVGTAAMAT  259 (717)
T ss_pred             CEEEECHHHHHH
T ss_conf             515752567764


No 400
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit; InterPro: IPR005875    Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This family represents PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, which catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.    PurK belongs to the ATP grasp superfamily of C-N ligase enzymes. Each subunit of PurK is composed of three domains (A, B, and C). The B domain contains a flexible, glycine-rich loop (B loop, T123-G130) that is disordered in the sulphate-PurK structure and becomes ordered in the MgADP-PurK structure. MgADP is wedged between the B and C domains, as with all members of the ATP grasp superfamily. Other enzymes in this superfamily contain a conserved Omega loop proposed to interact with the B loop, define the specificity of their nonnucleotide substrate, and protect the acyl phosphate intermediate formed from this substrate. PurK contains a minimal Omega loop without conserved residues. In the reaction catalyzed by PurK, carboxyphosphate is the putative acyl phosphate intermediate. The sulphate of the sulphate ion-liganded PurK interacts electrostatically with Arg 242 and the backbone amide group of Asn 245, components of the J loop of the C domain. This sulphate may reveal the location of the carboxyphosphate binding site. Conserved residues within the C-terminus of the C domain define a pocket that is proposed to bind AIR in collaboration with an N-terminal strand loop helix motif in the A domain (P loop, G8-L1). The P loop is proposed to bind the phosphate of AIR on the basis of similar binding sites observed in PurN and PurE and proposed in PurD and PurT, four other enzymes in the purine pathway .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=65.89  E-value=11  Score=18.32  Aligned_cols=113  Identities=22%  Similarity=0.360  Sum_probs=75.3

Q ss_pred             EEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCC--CEE-----------------------EEEEEC
Q ss_conf             6856788512033676404776079997066421589998677649--825-----------------------998523
Q gi|254780975|r   65 FDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMG--KKT-----------------------GVAINP  119 (224)
Q Consensus        65 ~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g--~k~-----------------------Giai~p  119 (224)
                      -.|+.-..||+. ++++++. +|.||+-.|..+  ...++++...|  .++                       |++.-|
T Consensus        44 ~~v~a~~~d~~~-i~~La~~-cDviT~E~Ehv~--~~~L~~L~~~g~~~~~~P~~~~l~~~~dk~~qK~~L~~~g~~vp~  119 (386)
T TIGR01161        44 EHVLASFTDPEA-IRELAEA-CDVITFEFEHVD--VEALEKLEARGDKVKVRPSPEALAIIQDKLTQKQFLQKLGLPVPP  119 (386)
T ss_pred             CEEEEEECCHHH-HHHHHHH-CCEEEEEECCCC--CHHHHHHHHCCCEEEEECCHHHHHHHHCHHHHHHHHHHCCCCCCC
T ss_conf             579985148789-9999976-565543101378--567899983598477603889999883658999999966899884


Q ss_pred             CC-----CHHHHHHHHHHCCEEEEE-EEECCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf             33-----447899886201402899-8306776533-22013577899865431386526981589988
Q gi|254780975|r  120 ET-----PVAILEDVIDEIDMILIM-TVNPGFGGQQ-LIESTIPKIRQAKALIGKRSISLEVDGGVTSR  181 (224)
Q Consensus       120 ~T-----~~~~i~~~l~~~D~vliM-~V~PG~~Gq~-f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~  181 (224)
                      .-     ..+.++.....+++--|+ +..=||.|+. |+-...+.+.++-+.+.+.+..+.|-..|+.+
T Consensus       120 f~~~~~~~~~~~~~~~~~~g~p~VlK~~~gGYDGrGq~~i~~~~~~~~~~~~~~~~~~~~~~E~fV~F~  188 (386)
T TIGR01161       120 FVVIEIKDEEELDSALQELGFPVVLKARRGGYDGRGQFVIKSEADLPQALKELGDKEEELIVEEFVPFE  188 (386)
T ss_pred             CCEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEECCHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf             120223684257899987398479984206527731089747432889998528884058985235620


No 401
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=65.63  E-value=7.9  Score=19.23  Aligned_cols=150  Identities=13%  Similarity=0.220  Sum_probs=83.6

Q ss_pred             CCHHHHHHHHHCCCCE------EEEEEEEEECCHHHHHHCCCC--CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEE--E
Q ss_conf             1789999864125641------685678851203367640477--60799970664215899986776498259985--2
Q gi|254780975|r   49 FGADVIRSLRSYSDSV------FDCHLMISSIDSHINIIADAG--CDIITFHPESSPHIRRSLRTIHAMGKKTGVAI--N  118 (224)
Q Consensus        49 ~~~~~i~~i~~~t~~~------~dvHLMv~~P~~~i~~~~~~g--~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai--~  118 (224)
                      ||-++++.+.-.-...      +|..-|+..-.+++..|.+.|  .++|.+-.-+|..--+..+.+.+.|+++-+.+  +
T Consensus        79 ~g~eil~~VpGrVS~EVdarls~d~~~~i~~A~~li~ly~~~gi~~~rilIKipaTweGi~A~~~Le~~GI~~n~TlvFs  158 (313)
T cd00957          79 FGTEILKLIPGRVSTEVDARLSFDTNATIAKARKLIKLYEEAGIDKERILIKIAATWEGIQAAKQLEKEGIHCNLTLLFS  158 (313)
T ss_pred             HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             99998556888658886610214858899999999999997199845457855887889999999997498543677647


Q ss_pred             CCCC-------HHHHHHHHHHC-CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHH
Q ss_conf             3334-------47899886201-40289983067765332201357789986543138652--69815899889999996
Q gi|254780975|r  119 PETP-------VAILEDVIDEI-DMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSLVQ  188 (224)
Q Consensus       119 p~T~-------~~~i~~~l~~~-D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~--I~vDGGvn~~~i~~l~~  188 (224)
                      ..+-       ...+.||..-+ ||.-..+-...+.+ ...| -..-++++.+++.+++++  +..-.--|.+.+..|  
T Consensus       159 ~~QA~aaa~Ag~~~IsPfVGRi~DWyk~~~~~~~~~~-~~DP-Gv~~v~~Iy~yyk~~g~~T~Vm~ASfRn~~ei~~L--  234 (313)
T cd00957         159 FAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTA-EEDP-GVASVKKIYNYYKKFGYKTKVMGASFRNIGQILAL--  234 (313)
T ss_pred             HHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCCCCC-CCCC-HHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHH--
T ss_conf             9999999976987988652317789883257655777-7795-07999999999997699707853102779999987--


Q ss_pred             CCCCEEEECHHHHC
Q ss_conf             79989997426637
Q gi|254780975|r  189 AGADLLVVGSSFFN  202 (224)
Q Consensus       189 ~Gad~~V~Gsaif~  202 (224)
                      +|+|.+...-.+..
T Consensus       235 aGcD~lTisP~LL~  248 (313)
T cd00957         235 AGCDYLTISPALLE  248 (313)
T ss_pred             HCCCEEECCHHHHH
T ss_conf             37882413999999


No 402
>TIGR00583 mre11 DNA repair protein (mre11); InterPro: IPR003701   Mre11 and Rad50 are two proteins required for DNA repair and meiosis-specific double-strand break formation in Saccharomyces cerevisiae. Mre11 by itself has 3' to 5' exonuclease activity that is increased when Mre11 is in a complex with Rad50 .    These eukaryotic proteins contain one metallo-phosphoesterase domain followed by an Mre11 DNA-binding domain. S. cerevisiae Mre11 is required for DNA repair and meiosis-specific double-strand break (DSB) formation  and has both 3' to 5' exonuclease activity (which increases when in complex with Rad50) and endonuclease activity. The N-terminal phosphoesterase domain is required for DSB repair, and the carboxyl-terminal dsDNA-binding domain is essential during meiosis for chromatin modification and DSB formation . Schizosaccharomyces pombe rad32 is required for repair of double strand breaks and recombination .  For additional information please see . ; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=65.63  E-value=11  Score=18.29  Aligned_cols=38  Identities=16%  Similarity=0.340  Sum_probs=15.5

Q ss_pred             HHHHHHHHCCCCEEEECHHHHC--CCCHHHHHHHHHHHHH
Q ss_conf             8999999679989997426637--8998999999999999
Q gi|254780975|r  181 RNIKSLVQAGADLLVVGSSFFN--QKGEISYAKRLNDLKK  218 (224)
Q Consensus       181 ~~i~~l~~~Gad~~V~Gsaif~--~~d~~~~~~~l~~l~~  218 (224)
                      |-+....+..||++++|+=||=  +|=....++.++.||+
T Consensus        33 Evl~iA~~~~VDMvllgGDLFH~NkPSrk~lYqvl~~LR~   72 (424)
T TIGR00583        33 EVLQIAKEQDVDMVLLGGDLFHENKPSRKSLYQVLRSLRL   72 (424)
T ss_pred             HHHHHHHHCCCCEEEECCCEEECCCCCHHHHHHHHHHHHH
T ss_conf             9999975089678985681642458407899999999987


No 403
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=65.43  E-value=11  Score=18.27  Aligned_cols=183  Identities=16%  Similarity=0.224  Sum_probs=101.1

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEE---EEEEEEEECC---HHHHHHCCCCCCEEEE-E
Q ss_conf             9999999965998999973426345843417899998641256416---8567885120---3367640477607999-7
Q gi|254780975|r   20 GEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF---DCHLMISSID---SHINIIADAGCDIITF-H   92 (224)
Q Consensus        20 ~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~---dvHLMv~~P~---~~i~~~~~~g~d~i~~-H   92 (224)
                      .+-++.+...--+.-++|++   .+|-++.=....+.+ +-+++.+   ++|-.-.-+.   -=..++.+.|++++.+ |
T Consensus       421 ~~~~~~l~~~~~~~~~~ev~---i~ppft~l~~~~~~~-~~s~i~~GAQn~~~~~~GA~TGEiS~~mL~~~g~~yviiGH  496 (653)
T PRK13962        421 KEFVSKLVFILKDVQRVEVV---VCPPFTALRSVKEAL-DGSNIKLGAQNVFYEEKGAYTGEISPGMLKDIGVEYVIIGH  496 (653)
T ss_pred             HHHHHHHHHHCCCCCCCEEE---EECCHHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEECC
T ss_conf             99999999756885576599---978873399999985-79981798463789878587452119999986999999791


Q ss_pred             C-------CCCCCHHHHHHHHHHCCCEEEEEEECC-------CCHH----HHHHHHHHCCE----EEEEEEECCC---CC
Q ss_conf             0-------664215899986776498259985233-------3447----89988620140----2899830677---65
Q gi|254780975|r   93 P-------ESSPHIRRSLRTIHAMGKKTGVAINPE-------TPVA----ILEDVIDEIDM----ILIMTVNPGF---GG  147 (224)
Q Consensus        93 ~-------E~~~~~~~~i~~i~~~g~k~Giai~p~-------T~~~----~i~~~l~~~D~----vliM~V~PG~---~G  147 (224)
                      .       |+.+.+.+-+..+.+.|..+-+.+.-.       ...+    .+...+..++.    =++..=+|=.   .|
T Consensus       497 SERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGE~~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~~~iviAYEPvWAIGTG  576 (653)
T PRK13962        497 SERRQYFGETDELINRKVKAVLKAGLTPILCVGETLEEREKGLTFEVVRGQLKEGLAGLSAEDVKKVVIAYEPVWAIGTG  576 (653)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCEEEEECCHHHCCCC
T ss_conf             56526269898999999999998869899991898999867896899999999998569978848789998827744899


Q ss_pred             CCCCC----HHHHHHHH-HHHHHHC---CCCEEEEECCCCHHHHHHHHHC-CCCEEEECHHHHCCCCH
Q ss_conf             33220----13577899-8654313---8652698158998899999967-99899974266378998
Q gi|254780975|r  148 QQLIE----STIPKIRQ-AKALIGK---RSISLEVDGGVTSRNIKSLVQA-GADLLVVGSSFFNQKGE  206 (224)
Q Consensus       148 q~f~~----~~l~kI~~-l~~~~~~---~~~~I~vDGGvn~~~i~~l~~~-Gad~~V~Gsaif~~~d~  206 (224)
                      +.-.+    .+...||+ +.+++.+   .++.|.--|+||.+|+.++... ++|-+-+|+|=.+.++.
T Consensus       577 ~~a~~~~~~e~~~~Ir~~l~~~~~~~~a~~i~IlYGGSV~~~N~~~l~~~~~vDG~LVGgASL~~~~F  644 (653)
T PRK13962        577 KVATPKQAQEVHAFIRAVLAEMFGEEAARSVRILYGGSVKPDNALGLMEQPDIDGGLVGGASLKAEEF  644 (653)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHH
T ss_conf             99899999999999999999872955508552886188898999999668898868821586798899


No 404
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II  (metal dependent) aldolase subfamilies.
Probab=65.30  E-value=11  Score=18.25  Aligned_cols=175  Identities=15%  Similarity=0.227  Sum_probs=103.5

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHH-HC-CCCEEEEEEEEEECC-----------HHHHHH
Q ss_conf             88999999999996599899997342634584341789999864-12-564168567885120-----------336764
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLR-SY-SDSVFDCHLMISSID-----------SHINII   81 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~-~~-t~~~~dvHLMv~~P~-----------~~i~~~   81 (224)
                      ...+++..++.+.++|+|-+-.             .+=.++.+. .+ .+.++=+||=..++.           -.++..
T Consensus        19 gl~d~~~~i~~~~~~g~dai~~-------------~~G~~~~~~~~~~~~~~li~~ls~~t~~~~~~~~~~~l~~sVeeA   85 (235)
T cd00958          19 GLEDPEETVKLAAEGGADAVAL-------------TKGIARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDA   85 (235)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEE-------------CHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHCCHHHH
T ss_conf             6459899999998649999998-------------888997515321578766999646764578885177665169999


Q ss_pred             CCCCCCEEEEECCC--------CCCHHHHHHHHHHCCCEEEEEEEC-------CCCHHHHHHHH---HH--CCEEEEEEE
Q ss_conf             04776079997066--------421589998677649825998523-------33447899886---20--140289983
Q gi|254780975|r   82 ADAGCDIITFHPES--------SPHIRRSLRTIHAMGKKTGVAINP-------ETPVAILEDVI---DE--IDMILIMTV  141 (224)
Q Consensus        82 ~~~g~d~i~~H~E~--------~~~~~~~i~~i~~~g~k~Giai~p-------~T~~~~i~~~l---~~--~D~vliM~V  141 (224)
                      .+.|+|-+.+|.--        ..++-++.+.+++.|+=+-+-.-|       .+..+.+..-.   -.  .|.|=+  -
T Consensus        86 vrlGAdaV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Pll~~~yprG~~~~~~~d~~~ia~aaRia~ELGADiVKv--~  163 (235)
T cd00958          86 VRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKT--K  163 (235)
T ss_pred             HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE--C
T ss_conf             83555679999868981689999999999999998399789997416876556566899999999999978998982--3


Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC---CH----HHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHH
Q ss_conf             0677653322013577899865431386526981589---98----8999999679989997426637899899999999
Q gi|254780975|r  142 NPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV---TS----RNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLN  214 (224)
Q Consensus       142 ~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv---n~----~~i~~l~~~Gad~~V~Gsaif~~~d~~~~~~~l~  214 (224)
                      .||      .++.+.++-      ..-...+-+-||=   +.    +.+....++|+.-++.|.-+|..+||.+..++|.
T Consensus       164 y~g------~~e~f~~vv------~~~~vPVviaGG~k~~~~~~~L~~v~~a~~aGa~Gv~~GRNvfQ~~~p~~~~~al~  231 (235)
T cd00958         164 YTG------DAESFKEVV------EGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAIS  231 (235)
T ss_pred             CCC------CHHHHHHHH------HHCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCCHHHHHHHHH
T ss_conf             999------989999999------70899899808999999999999999999769956763641225888999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780975|r  215 DL  216 (224)
Q Consensus       215 ~l  216 (224)
                      .+
T Consensus       232 ~i  233 (235)
T cd00958         232 AV  233 (235)
T ss_pred             HH
T ss_conf             74


No 405
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=65.20  E-value=11  Score=18.24  Aligned_cols=167  Identities=14%  Similarity=0.159  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEE-C-CHHHHHHCCCCCCEEEEECC
Q ss_conf             999999999996599899997342634584341789999864125641685678851-2-03367640477607999706
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISS-I-DSHINIIADAGCDIITFHPE   94 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~-P-~~~i~~~~~~g~d~i~~H~E   94 (224)
                      -.-.+-.+.|.+.|++++-+=      .|..+  ....+.++...+..+...+++-. + ..-++...++|++.+.+..-
T Consensus        26 ~~K~~ia~~L~~~GV~~IEvG------~P~~~--~~e~~~~~~i~~~~l~~~i~~~~R~~~~di~~a~~~g~~~v~i~~~   97 (378)
T PRK11858         26 EEKLAIARMLDEIGVDQIEAG------FPAVS--EDEKEAIKAIAKLGLNASILAWNRAVKSDIDASIDCGVDAVHIFIA   97 (378)
T ss_pred             HHHHHHHHHHHHCCCCEEEEE------CCCCC--CCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEC
T ss_conf             999999999998198999994------77778--3489999999856798458874035787799998579698999960


Q ss_pred             CC----------------CCHHHHHHHHHHCCCEEEEEEEC--CCCHHHHHHHHHH-----CCEEEEEEEECCCCCCCCC
Q ss_conf             64----------------21589998677649825998523--3344789988620-----1402899830677653322
Q gi|254780975|r   95 SS----------------PHIRRSLRTIHAMGKKTGVAINP--ETPVAILEDVIDE-----IDMILIMTVNPGFGGQQLI  151 (224)
Q Consensus        95 ~~----------------~~~~~~i~~i~~~g~k~Giai~p--~T~~~~i~~~l~~-----~D~vliM~V~PG~~Gq~f~  151 (224)
                      +.                +...+.+++++++|..+-+..--  .++++.+..++..     +|.|.+ +-.-|..   .=
T Consensus        98 ~Sd~h~~~~l~~t~~e~l~~~~~~v~~Ak~~Gl~v~f~~eD~~r~~~~~l~~~~~~a~~~Gad~I~l-~DT~G~~---~P  173 (378)
T PRK11858         98 TSDIHLKYKLKKTREEVLERLVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEAAKAAEEAGADRVRF-CDTVGIL---DP  173 (378)
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCC---CH
T ss_conf             6799999996899899999999999999976986999440125689999999999999749989996-3655666---99


Q ss_pred             CHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf             0135778998654313-8652698158998899999967998999
Q gi|254780975|r  152 ESTIPKIRQAKALIGK-RSISLEVDGGVTSRNIKSLVQAGADLLV  195 (224)
Q Consensus       152 ~~~l~kI~~l~~~~~~-~~~~I~vDGGvn~~~i~~l~~~Gad~~V  195 (224)
                      ..+.+.++.+++..+- -.+...=|=|.-.-|.-...++||+.+=
T Consensus       174 ~~v~~~v~~l~~~~~~~i~~H~HNd~GlAvANalaAv~AGa~~v~  218 (378)
T PRK11858        174 FTMYELVKELVEAVDIPIEVHCHNDFGMATANAIAGIEAGATQVH  218 (378)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEE
T ss_conf             999999999997269855999707755599999999980999899


No 406
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to 
Probab=64.81  E-value=11  Score=18.19  Aligned_cols=138  Identities=14%  Similarity=0.172  Sum_probs=70.1

Q ss_pred             HHHHHHHHHCCCCEEEEEEEEE-----ECCHHHHHHCCCCCCEEEEECCCC--------------CCHHHHHHHHHH---
Q ss_conf             8999986412564168567885-----120336764047760799970664--------------215899986776---
Q gi|254780975|r   51 ADVIRSLRSYSDSVFDCHLMIS-----SIDSHINIIADAGCDIITFHPESS--------------PHIRRSLRTIHA---  108 (224)
Q Consensus        51 ~~~i~~i~~~t~~~~dvHLMv~-----~P~~~i~~~~~~g~d~i~~H~E~~--------------~~~~~~i~~i~~---  108 (224)
                      .+.++.|.+.+++|+-+.+=.=     +..+.++.+.++|+--|++  |-.              -..++...+|+.   
T Consensus        58 ~~~~~~I~~a~~lPv~aD~d~GyG~~~~v~~tv~~~~~aG~agi~I--ED~~~~k~~~~~~~~~l~~~~e~~~ki~aa~~  135 (243)
T cd00377          58 LAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHI--EDQVGPKKCGHHGGKVLVPIEEFVAKIKAARD  135 (243)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             9999999961699889987667786799999999999749967986--58788765666576323069999999999999


Q ss_pred             CCCE-EEEEEECCCC------------HHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EE
Q ss_conf             4982-5998523334------------4789988620-140289983067765332201357789986543138652-69
Q gi|254780975|r  109 MGKK-TGVAINPETP------------VAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS-LE  173 (224)
Q Consensus       109 ~g~k-~Giai~p~T~------------~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~-I~  173 (224)
                      .... +-+.|+.-|+            ++...-|.+- .|.|.+-+..           ..+-++++.+..+ ..+. ..
T Consensus       136 a~~~~~d~~I~ARTDa~~~~~~~~~eai~R~~aY~~AGAD~ifi~~~~-----------~~~ei~~~~~~~~-~Pl~~~~  203 (243)
T cd00377         136 ARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK-----------DPEEIRAFAEAPD-VPLNVNM  203 (243)
T ss_pred             HHHHCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCC-----------CHHHHHHHHHHCC-CCEEEEE
T ss_conf             886368816875423454057889999999999998299899945899-----------9999999997369-9989995


Q ss_pred             EECCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             815899889999996799899974266378
Q gi|254780975|r  174 VDGGVTSRNIKSLVQAGADLLVVGSSFFNQ  203 (224)
Q Consensus       174 vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~  203 (224)
                      ..|+ +.-+..+|.+.|+.++..|++.|..
T Consensus       204 ~~~~-~~~~~~eL~~lGv~~v~~g~~~~~a  232 (243)
T cd00377         204 TPGG-NLLTVAELAELGVRRVSYGLALLRA  232 (243)
T ss_pred             CCCC-CCCCHHHHHHCCCCEEEECHHHHHH
T ss_conf             7889-9999999998699699985199999


No 407
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed.  Most characterized GH31 enzymes are alpha-glucosidases.  In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=64.78  E-value=11  Score=18.19  Aligned_cols=65  Identities=20%  Similarity=0.254  Sum_probs=36.2

Q ss_pred             HHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCH
Q ss_conf             999986412564168567885120336764047760799970664215899986776498259985233344
Q gi|254780975|r   52 DVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPV  123 (224)
Q Consensus        52 ~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~  123 (224)
                      +.++.+|+. ++|+|+  ++.+.. |-+   ..+.-......+.-+++...++.+++.|.++.+-++|...-
T Consensus        28 ~~v~~~r~~-~iP~d~--i~~D~~-~~~---~~~~~~~~~d~~~fPdp~~~i~~l~~~G~~~~~~~~P~v~~   92 (265)
T cd06589          28 EVIDGMREN-DIPLDG--FVLDDD-YTD---GYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYIRE   92 (265)
T ss_pred             HHHHHHHHC-CCCCCE--EEEECC-CCC---CCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHH
T ss_conf             999999984-999765--998388-046---99725204687779999999999997899899974747999


No 408
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=64.38  E-value=12  Score=18.14  Aligned_cols=144  Identities=17%  Similarity=0.262  Sum_probs=81.4

Q ss_pred             HHHHHHHHH-CCCCEEEEEE-------EEEECCHHHHHH----CCCCCCEEEEECCCCC---CHHHHHHHHHHCCCEEEE
Q ss_conf             899998641-2564168567-------885120336764----0477607999706642---158999867764982599
Q gi|254780975|r   51 ADVIRSLRS-YSDSVFDCHL-------MISSIDSHINII----ADAGCDIITFHPESSP---HIRRSLRTIHAMGKKTGV  115 (224)
Q Consensus        51 ~~~i~~i~~-~t~~~~dvHL-------Mv~~P~~~i~~~----~~~g~d~i~~H~E~~~---~~~~~i~~i~~~g~k~Gi  115 (224)
                      .+.++.+|+ .+++++.--|       +...|.+.+..|    .+.|.|..-+- .+.+   +..-.+...++.|.-+-.
T Consensus       597 WeRL~~lRk~~PNvlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiF-DsLNwv~~M~vaidAV~e~gkv~Ea  675 (1149)
T COG1038         597 WERLERLRKAVPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIF-DSLNWVEQMRVAIDAVREAGKVAEA  675 (1149)
T ss_pred             HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE-HHHCCHHHCHHHHHHHHHCCCEEEE
T ss_conf             899999987686468999860056567677966899999999876696489841-0010254344589999862984799


Q ss_pred             E-------EECCCCHHHHHHHHHHCCE-----EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE----ECCCC
Q ss_conf             8-------5233344789988620140-----289983067765332201357789986543138652698----15899
Q gi|254780975|r  116 A-------INPETPVAILEDVIDEIDM-----ILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEV----DGGVT  179 (224)
Q Consensus       116 a-------i~p~T~~~~i~~~l~~~D~-----vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~v----DGGvn  179 (224)
                      +       ++|+-+.-.+.+|++...-     -.+++|.. -+|----..+...|+.||+-   .++.|.+    --|..
T Consensus       676 tiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKD-MAGLLKP~AA~~Li~aLr~~---~dlPIHlHTHDTsG~~  751 (1149)
T COG1038         676 TICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKD-MAGLLKPAAAYRLISALRET---VDLPIHLHTHDTSGNG  751 (1149)
T ss_pred             EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHH-HHHCCCHHHHHHHHHHHHHH---CCCCEEEECCCCCCCH
T ss_conf             8873056678776444489999999999966772787633-34214769999999999874---4884487516788718


Q ss_pred             HHHHHHHHHCCCCEEEECHH
Q ss_conf             88999999679989997426
Q gi|254780975|r  180 SRNIKSLVQAGADLLVVGSS  199 (224)
Q Consensus       180 ~~~i~~l~~~Gad~~V~Gsa  199 (224)
                      .-|.....++|||++=+.++
T Consensus       752 ~at~~aA~~AGvDivD~A~~  771 (1149)
T COG1038         752 VATYLAAVEAGVDIVDVAMA  771 (1149)
T ss_pred             HHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999838636666544


No 409
>PRK10063 predicted glycosyl transferase; Provisional
Probab=64.31  E-value=11  Score=18.28  Aligned_cols=70  Identities=17%  Similarity=0.225  Sum_probs=32.8

Q ss_pred             CHHHHHHHHHHHHHCC---CCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHH-----HHHCCCCC
Q ss_conf             8899999999999659---989999734263458434178999986412564168567885120336-----76404776
Q gi|254780975|r   15 DFSRLGEEISNITKAG---AKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHI-----NIIADAGC   86 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~---~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i-----~~~~~~g~   86 (224)
                      +...|++.++.+.+..   -+.+..=|+||-=..+      .++-++++ .-.+++. -+.+|.+=+     +-+..|..
T Consensus        12 ~~~~l~~Tl~Sv~~~~~~~~~~~E~IIIDGgStDg------T~~ii~~~-~~~~~~~-~iSEpD~GIYdAmNKGI~~A~G   83 (248)
T PRK10063         12 NLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDG------TREYLENL-NGIFNLR-FVSEPDNGIYDAMNKGIAMAQG   83 (248)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC------HHHHHHHC-CCCCCEE-EEEECCCCCHHHHHHHHHHCCC
T ss_conf             98999999999999861878986999997939611------79999970-6666679-9993898808898851987788


Q ss_pred             CEEEEE
Q ss_conf             079997
Q gi|254780975|r   87 DIITFH   92 (224)
Q Consensus        87 d~i~~H   92 (224)
                      |+|.|-
T Consensus        84 d~I~FL   89 (248)
T PRK10063         84 KFALFL   89 (248)
T ss_pred             CEEEEE
T ss_conf             889998


No 410
>PRK06846 deaminase; Validated
Probab=64.24  E-value=12  Score=18.12  Aligned_cols=182  Identities=13%  Similarity=0.221  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHCCCCEE--EEEEECCEECCCCCC-CHHHHHHHHHCCCCEEEEEEEE--------EECCHHHHHHCCCCC
Q ss_conf             99999999996599899--997342634584341-7899998641256416856788--------512033676404776
Q gi|254780975|r   18 RLGEEISNITKAGAKQI--HFDVMDGCFVPNISF-GADVIRSLRSYSDSVFDCHLMI--------SSIDSHINIIADAGC   86 (224)
Q Consensus        18 ~l~~~i~~l~~~~~d~i--HiDImDg~fvpn~~~-~~~~i~~i~~~t~~~~dvHLMv--------~~P~~~i~~~~~~g~   86 (224)
                      .-++.++.+-.+|...+  |+|+ |.    ..++ +.+-+.++++.-.-.+|+.+-.        .+-+..+++..+.|+
T Consensus       115 Ra~~~l~~~~a~Gtt~iRTHvDv-dp----~~gl~~lea~~~~~e~~~~~i~lqiVAFPQ~Gll~~~~~~Ll~eAl~~Ga  189 (410)
T PRK06846        115 RAEKLIELLLSNGATIIRSHCNI-DP----VIGLKNLENTQAALERYQDGFEYEIVAFPQHGLLRSNSEPLMREAMQMGA  189 (410)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECC-CC----CCCHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf             99999999997390618765544-77----51135899999999984422106689710467567447999999998589


Q ss_pred             CEEEEE--CCCCC----CHHHHHHHHHHCCCEEEEEEECCCCH--HHHHHHHHHCCEEEEEEEECCCCCCCCCCHHH---
Q ss_conf             079997--06642----15899986776498259985233344--78998862014028998306776533220135---
Q gi|254780975|r   87 DIITFH--PESSP----HIRRSLRTIHAMGKKTGVAINPETPV--AILEDVIDEIDMILIMTVNPGFGGQQLIESTI---  155 (224)
Q Consensus        87 d~i~~H--~E~~~----~~~~~i~~i~~~g~k~Giai~p~T~~--~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l---  155 (224)
                      |.+--=  +....    ++..++....++|.-+=+=+.-..+.  -.++.++...-       .-|++|+....-++   
T Consensus       190 d~vGGvdP~~~d~d~~~~L~~~f~LA~~~~~~vD~HldE~~d~~~~~l~~la~~t~-------~~g~~grVt~sH~~sL~  262 (410)
T PRK06846        190 HLVGGVDPATVDGAIEKSLDTMFQIAVEFNKGVDIHLHDTNPLGVATIKKLVETTE-------EAQWKGRVTISHAFALG  262 (410)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHH-------HHCCCCCEEEEHHHHHH
T ss_conf             67984377667857999999999999980999236315889847789999999999-------82998988837344464


Q ss_pred             ----HHHHHHHHHHHCCCCEEE----EECCCCHHHHHHHHHCCCCEEEECHHH------HCCCCHHHHHHHH
Q ss_conf             ----778998654313865269----815899889999996799899974266------3789989999999
Q gi|254780975|r  156 ----PKIRQAKALIGKRSISLE----VDGGVTSRNIKSLVQAGADLLVVGSSF------FNQKGEISYAKRL  213 (224)
Q Consensus       156 ----~kI~~l~~~~~~~~~~I~----vDGGvn~~~i~~l~~~Gad~~V~Gsai------f~~~d~~~~~~~l  213 (224)
                          ....++-++..+.++.|.    ...|+.  -+++|.++|+++.+.+-.+      |++-|+.+.+..+
T Consensus       263 ~~~~~~~~~~~~~la~agI~vvst~P~~r~v~--pv~eL~~aGV~V~~g~Dni~Dpw~P~G~gD~Le~a~~~  332 (410)
T PRK06846        263 DLNEEEVEELAERLAAQQISITSTVPIGRLHM--PLPLLHEKGVKVSLGTDSVTDHWSPFGTGDMLEKANLY  332 (410)
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC--CHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             39999999999999985993998589989978--79999976991998268886898788888899999999


No 411
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=64.11  E-value=12  Score=18.11  Aligned_cols=178  Identities=17%  Similarity=0.182  Sum_probs=89.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC--CHHHHHHHHHC-CCCEEEEEEEEEECCHHHHHHCCCCCCEEE
Q ss_conf             588999999999996599899997342634584341--78999986412-564168567885120336764047760799
Q gi|254780975|r   14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF--GADVIRSLRSY-SDSVFDCHLMISSIDSHINIIADAGCDIIT   90 (224)
Q Consensus        14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~--~~~~i~~i~~~-t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~   90 (224)
                      .+.-+++++.+.+.+.|.+  ||.+.-|.--.+.++  =-+.++.++++ +.+.++|-=|..   .-...+.++|+|.++
T Consensus       104 Ls~eEI~~E~~ai~~~G~k--~ILLvtGE~~~~~~~~Yi~~~v~~ik~~f~~v~iev~Pl~~---eeY~~L~~aG~d~~~  178 (371)
T PRK09240        104 LDEEEIEREMAAIKKLGFE--HILLVTGEHEAKVGVDYIRRALPLAREYFSSVAIEVQPLSE---EEYAELVELGLDGVT  178 (371)
T ss_pred             CCHHHHHHHHHHHHHCCCC--EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCH---HHHHHHHHCCCCEEE
T ss_conf             8999999999999976952--38854057877698899999999999756740799525998---999999985998699


Q ss_pred             EECCCCCCH-----------------HHHHHHHHHCCC-EEEEE--EECCCC-HHHH-----HHHHHHCCEEEEEEE---
Q ss_conf             970664215-----------------899986776498-25998--523334-4789-----988620140289983---
Q gi|254780975|r   91 FHPESSPHI-----------------RRSLRTIHAMGK-KTGVA--INPETP-VAIL-----EDVIDEIDMILIMTV---  141 (224)
Q Consensus        91 ~H~E~~~~~-----------------~~~i~~i~~~g~-k~Gia--i~p~T~-~~~i-----~~~l~~~D~vliM~V---  141 (224)
                      +-.|+-+..                 .+.....-+.|+ ++|+.  +..+.. .+.+     ..||..--+..-.|+   
T Consensus       179 vyQETY~~~~Y~~lHp~G~K~dy~~RL~a~eRa~~aGi~~vgiGaLlGL~dwr~e~~~~~~Ha~~L~~~y~~~~~siS~P  258 (371)
T PRK09240        179 VYQETYNPATYAKHHLRGPKQDFFYRLETPERAARAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWRARYSISFP  258 (371)
T ss_pred             EEEHHCCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf             96032599999985889985452545237888987599703611022654689999999999999998779987576357


Q ss_pred             --ECCCCCCCCCCH--HHH-----HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf             --067765332201--357-----78998654313865269815899889999996799899974266
Q gi|254780975|r  142 --NPGFGGQQLIES--TIP-----KIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSF  200 (224)
Q Consensus       142 --~PG~~Gq~f~~~--~l~-----kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsai  200 (224)
                        .|-.+|  |.|.  +-+     -|.-+|-..|..++.+.  --=+.+-=..+...|+..+-.||..
T Consensus       259 RlrP~~g~--~~p~~~vsD~~l~q~i~a~Rl~~P~~gi~lS--TRE~~~~Rd~li~lGvT~mSAgs~T  322 (371)
T PRK09240        259 RLRPCTGG--FEPKSIVSDRQLVQLICAFRLFLPDVEISLS--TRESPEFRDNLIPLGITKMSAGSST  322 (371)
T ss_pred             CCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE--CCCCHHHHHHHHHHCCEEECCCCCC
T ss_conf             53368899--8898657889999999999986655561686--4789899988885256025555546


No 412
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=64.00  E-value=12  Score=18.09  Aligned_cols=123  Identities=11%  Similarity=0.212  Sum_probs=64.7

Q ss_pred             CHHHHHHCCCCCCEEEEE------------------CCCCC--CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC
Q ss_conf             033676404776079997------------------06642--1589998677649825998523334478998862014
Q gi|254780975|r   75 DSHINIIADAGCDIITFH------------------PESSP--HIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEID  134 (224)
Q Consensus        75 ~~~i~~~~~~g~d~i~~H------------------~E~~~--~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D  134 (224)
                      .++++.+.+.|+|.|++-                  +-+..  .=.+.+++.+++| -.-+.+-...+.+.+..+...++
T Consensus        82 ~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G-~~rvVl~rEls~~ei~~i~~~~~  160 (347)
T COG0826          82 ERYLDRLVELGVDAVIVADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELG-AKRVVLPRELSLEEIKEIKEQTP  160 (347)
T ss_pred             HHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHCC
T ss_conf             99999999759878997188999999975899868996567217899999999769-87998176489999999997288


Q ss_pred             -E---EEEEEEE-CCCCCCCCCCHHHHHHHHHHHH-----------HHC-CCCEEEEECC---------CCHHHHHHHHH
Q ss_conf             -0---2899830-6776533220135778998654-----------313-8652698158---------99889999996
Q gi|254780975|r  135 -M---ILIMTVN-PGFGGQQLIESTIPKIRQAKAL-----------IGK-RSISLEVDGG---------VTSRNIKSLVQ  188 (224)
Q Consensus       135 -~---vliM~V~-PG~~Gq~f~~~~l~kI~~l~~~-----------~~~-~~~~I~vDGG---------vn~~~i~~l~~  188 (224)
                       .   |.+-+-- ..++|+.|..+.......=+..           .+. ..-.....+|         ...+.++.+.+
T Consensus       161 ~veiEvfVhGalcia~SgRC~ls~~~~~~~~n~g~c~~~~r~~~~~~~~~~~~~~~~~~g~~~~s~~dl~~~~~l~~L~~  240 (347)
T COG0826         161 DVEIEVFVHGALCIAYSGRCLLSNYFTGRSANRGGCCQPCRWGYYLVETLCKGEVLSLNGTYLMSPKDLNLLEELPELIE  240 (347)
T ss_pred             CCEEEEEEECCHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCHHHHHHHHHHHHHH
T ss_conf             86389999345354137333566642278878887677666441002566776067436407645201445776999997


Q ss_pred             CCCCEEEECH
Q ss_conf             7998999742
Q gi|254780975|r  189 AGADLLVVGS  198 (224)
Q Consensus       189 ~Gad~~V~Gs  198 (224)
                      +|+|.+=.-+
T Consensus       241 ~GV~s~KIeG  250 (347)
T COG0826         241 AGVDSLKIEG  250 (347)
T ss_pred             CCCCEEEECC
T ss_conf             5984899868


No 413
>pfam01487 DHquinase_I Type I 3-dehydroquinase. Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyses the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyses the trans-dehydration of 3-dehydroshikimate see pfam01220.
Probab=63.88  E-value=12  Score=18.08  Aligned_cols=120  Identities=16%  Similarity=0.194  Sum_probs=78.5

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEE--EEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEE--------CCHH-
Q ss_conf             7063258899999999999659989999--7342634584341789999864125641685678851--------2033-
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHF--DVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISS--------IDSH-   77 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHi--DImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~--------P~~~-   77 (224)
                      .||...+..+...+++.+.+ |+|.+-+  |....   +....-.+.++.+|+.+.+|+=+++=...        ++.| 
T Consensus         2 v~i~~~~~~~~~~~~~~~~~-~aD~vE~R~D~l~~---~~~~~i~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~   77 (222)
T pfam01487         2 VPVTGPSLEEALAELEELKE-GADAVELRVDLLEN---VDAEDVSEQLSALRESTGLPIIFTVRTKSEGGRFEGSEEEYL   77 (222)
T ss_pred             CCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCCCC---CCHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHH
T ss_conf             56057999999999998610-89989998603568---787899999999998389977999687788899889999999


Q ss_pred             --HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEE--CCCCH-HHHHHHHHH
Q ss_conf             --67640477607999706642158999867764982599852--33344-789988620
Q gi|254780975|r   78 --INIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAIN--PETPV-AILEDVIDE  132 (224)
Q Consensus        78 --i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~--p~T~~-~~i~~~l~~  132 (224)
                        +....+.|+|+|-+-+....+........++.+.++-++.+  -.||- +.+...+..
T Consensus        78 ~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~  137 (222)
T pfam01487        78 ELLKEALRLGPDYIDIELSSAPEELLSVIAAKKGGTKIILSYHDFEGTPSWEELLSLYEE  137 (222)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             999999975898899977778136899999742897899984589899699999999999


No 414
>PRK09230 cytosine deaminase; Provisional
Probab=63.82  E-value=12  Score=18.07  Aligned_cols=182  Identities=12%  Similarity=0.177  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHCCCCEE--EEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEE-------EC--CHHHHHHCCCCCC
Q ss_conf             9999999996599899--99734263458434178999986412564168567885-------12--0336764047760
Q gi|254780975|r   19 LGEEISNITKAGAKQI--HFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMIS-------SI--DSHINIIADAGCD   87 (224)
Q Consensus        19 l~~~i~~l~~~~~d~i--HiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~-------~P--~~~i~~~~~~g~d   87 (224)
                      -++.++.+-.+|.-.+  |+|+.|-    .+ -+.+-+.++|+...-.+|+.+..-       +|  ...+++-.+.|+|
T Consensus       104 a~~~l~~~ia~Gtt~iRtHvDv~dp----~l-~~leal~~~re~~~~~idlQiVAFPQ~Gl~~~~~~~~Ll~eAl~~Gad  178 (426)
T PRK09230        104 AWQTLKWQIANGIQHVRTHVDVSDP----TL-TALKAMLEVKEEVAPWVDLQIVAFPQEGILSYPNGEALLEEALRLGAD  178 (426)
T ss_pred             HHHHHHHHHHHCHHHEECCCCCCCC----HH-HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             9999999998182440133453770----35-169999999998435201688830365424688779999999980898


Q ss_pred             EEE--EECCCCC-----CHHHHHHHHHHCCCEEEEEEEC-CCC-HHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHH--
Q ss_conf             799--9706642-----1589998677649825998523-334-4789988620140289983067765332201357--
Q gi|254780975|r   88 IIT--FHPESSP-----HIRRSLRTIHAMGKKTGVAINP-ETP-VAILEDVIDEIDMILIMTVNPGFGGQQLIESTIP--  156 (224)
Q Consensus        88 ~i~--~H~E~~~-----~~~~~i~~i~~~g~k~Giai~p-~T~-~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~--  156 (224)
                      .+-  -|+|.+.     ++..++...+++|..+=+=+.- +.+ ...++.++...-       .-|++|.....-++.  
T Consensus       179 vvGGvp~~~~~~~~~~~~L~~vf~LA~~~~~~vDiHldE~~d~~~~~l~~ia~~t~-------~~g~~grVt~sH~~sL~  251 (426)
T PRK09230        179 VVGAIPHFEFTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAH-------REGMGARVTASHTTAMH  251 (426)
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH-------HHCCCCCEEEECCHHHH
T ss_conf             88478997778045799999999999982998588777888833789999999999-------83899865630005453


Q ss_pred             -----HHHHHHHHHHCCCCEEEE--------ECC---CC----HHHHHHHHHCCCCEEEECHHH------HCCCCHHHHH
Q ss_conf             -----789986543138652698--------158---99----889999996799899974266------3789989999
Q gi|254780975|r  157 -----KIRQAKALIGKRSISLEV--------DGG---VT----SRNIKSLVQAGADLLVVGSSF------FNQKGEISYA  210 (224)
Q Consensus       157 -----kI~~l~~~~~~~~~~I~v--------DGG---vn----~~~i~~l~~~Gad~~V~Gsai------f~~~d~~~~~  210 (224)
                           ...++-++..+.++.+..        -|.   ..    .--+++|.++|+++.+.+-.+      |++-|+.+.+
T Consensus       252 ~~~~~~~~~~~~~laeagi~vvslP~tNl~LqgR~~~~p~~Rgvtpv~eL~~aGV~V~~GsDnvrD~w~P~G~~D~Le~a  331 (426)
T PRK09230        252 SYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGITRVKEMLEAGINVCFGHDDVFDPWYPLGTANMLQVL  331 (426)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf             39999999999999982985785254332135656778888887789999976986998078887787489998899999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780975|r  211 KR  212 (224)
Q Consensus       211 ~~  212 (224)
                      ..
T Consensus       332 ~l  333 (426)
T PRK09230        332 HM  333 (426)
T ss_pred             HH
T ss_conf             99


No 415
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=63.52  E-value=12  Score=18.04  Aligned_cols=177  Identities=17%  Similarity=0.223  Sum_probs=98.0

Q ss_pred             ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCC-CCCCHHHHHHHHHCCCCEEEEEEEEEECCH-HHH-HHCC
Q ss_conf             8170632588999999999996599899997342634584-341789999864125641685678851203-367-6404
Q gi|254780975|r    7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPN-ISFGADVIRSLRSYSDSVFDCHLMISSIDS-HIN-IIAD   83 (224)
Q Consensus         7 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn-~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~-~i~-~~~~   83 (224)
                      +.-.|...|+..+.+.-..-.++|+++|-+-+  |...-+ ...=...++.+.+.+    |+-||++.|.- .++ -+..
T Consensus        15 ~~~ai~~~d~~~i~~~A~~Q~eaGA~~LDVN~--g~~~~de~~~m~~~v~~iq~~~----~~Pl~iDS~~~~aiEaaLk~   88 (268)
T PRK07535         15 IAEAIEEKDAAFIQKLALRQVEAGANYLDVNA--GTAVEEEPETMEWLVETVQEVV----DVPLCIDSPNPEAIEAGLKV   88 (268)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHCC----CCCEEECCCCHHHHHHHHHH
T ss_conf             99999867989999999999984999899608--9877468999999999997338----99967618989999999997


Q ss_pred             CCCCEE--EEECCCCCCHHHHHHHHHHCCCE-EEEEEE----CCCC---HHHHHHHHHHCC-------EE----EEEEEE
Q ss_conf             776079--99706642158999867764982-599852----3334---478998862014-------02----899830
Q gi|254780975|r   84 AGCDII--TFHPESSPHIRRSLRTIHAMGKK-TGVAIN----PETP---VAILEDVIDEID-------MI----LIMTVN  142 (224)
Q Consensus        84 ~g~d~i--~~H~E~~~~~~~~i~~i~~~g~k-~Giai~----p~T~---~~~i~~~l~~~D-------~v----liM~V~  142 (224)
                      ++-.-+  ++-.| .+.++..+..++++|+. +++++.    |.|.   ++..+.+++.++       -+    |++++ 
T Consensus        89 ~~Gr~iINSis~e-~er~~~i~pLakkyga~vI~L~~de~Gip~tae~R~~ia~~i~~~a~~~Gi~~edi~~DpLv~~i-  166 (268)
T PRK07535         89 AKGRPLINSVSAE-EERLEAVLPLVKKYNAPVVALTMDDTGIPKDAEVRLAVAKKLVEKAADFGIPPDDIYIDPLVLPL-  166 (268)
T ss_pred             CCCCCEEEEECCC-HHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCEE-
T ss_conf             7999726600388-05699999999984997999942899999999999999999999999859988998884551210-


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-------------CHHHHHHHHHCCCCEEEEC
Q ss_conf             677653322013577899865431386526981589-------------9889999996799899974
Q gi|254780975|r  143 PGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV-------------TSRNIKSLVQAGADLLVVG  197 (224)
Q Consensus       143 PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv-------------n~~~i~~l~~~Gad~~V~G  197 (224)
                        -.+|.....+++-|+.+++.+|.-+    .=+|+             |.-=+..+..+|-|..++-
T Consensus       167 --~t~~~~~~~~leair~ik~~~P~v~----t~~GlSNiSFGlP~R~~lNs~FL~~a~~~GLd~aI~n  228 (268)
T PRK07535        167 --SAAQTAGVEVLETIRRIKELYPKVH----TTCGLSNISFGLPNRKLINRAFLVMAMGAGMDSAILD  228 (268)
T ss_pred             --ECCCHHHHHHHHHHHHHHHHCCCCC----EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf             --0680789999999999998787777----5245400114753389999999999998699846459


No 416
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=63.31  E-value=7.6  Score=19.33  Aligned_cols=128  Identities=16%  Similarity=0.252  Sum_probs=62.7

Q ss_pred             HHHHHHHHCCCCEE-----------EEEEECCEEC--CC---CC-CCHHHHHHHHHCCCCEEEEE----EEEEECCHHHH
Q ss_conf             99999996599899-----------9973426345--84---34-17899998641256416856----78851203367
Q gi|254780975|r   21 EEISNITKAGAKQI-----------HFDVMDGCFV--PN---IS-FGADVIRSLRSYSDSVFDCH----LMISSIDSHIN   79 (224)
Q Consensus        21 ~~i~~l~~~~~d~i-----------HiDImDg~fv--pn---~~-~~~~~i~~i~~~t~~~~dvH----LMv~~P~~~i~   79 (224)
                      +-++.|.+.|+..+           |+...|-.|.  |.   -+ +..+.+-++.+.+.. --+|    .+.+|| .+.+
T Consensus        16 RiiRa~relGi~tVaVyS~~D~~s~hv~~ADe~~~ig~~~~~~sYLni~~Ii~~A~~~g~-dAIhPGYGFLSEn~-~fA~   93 (497)
T PRK08654         16 RVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNMERILEVAKKAGA-EAIHPGYGFLSENP-KFAK   93 (497)
T ss_pred             HHHHHHHHCCCEEEEECCHHHHCCCCHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHCC-CEEECCHHHHHHCH-HHHH
T ss_conf             999999985993999888378548997888989984898832121689999999998099-99957776755489-9999


Q ss_pred             HHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECC-----CCHHHHHHHHHHCCEEEEEEEECCCCCCCCC
Q ss_conf             64047760799970664215899986776498259985233-----3447899886201402899830677653322
Q gi|254780975|r   80 IIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPE-----TPVAILEDVIDEIDMILIMTVNPGFGGQQLI  151 (224)
Q Consensus        80 ~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~-----T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~  151 (224)
                      .+.++|...|--..|+.....+-. ..|..=.++|+-+-|+     ++.+........+.|=+++----|-+|....
T Consensus        94 ~~~~~Gi~fIGP~~~~I~~~GDK~-~ar~la~~~gVPvvPG~~~~v~~~~ea~~~A~~IGyPV~iKAs~GGGGrGmr  169 (497)
T PRK08654         94 ACEKEGITFIGPSSNVIEAMGSKI-NAKKLMKKAGVPVLPGTEEGIEDIEEAKEVAEEIGYPVIIKASAGGGGIGMR  169 (497)
T ss_pred             HHHHCCCEEECCCHHHHHHHHCHH-HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCE
T ss_conf             999879999993999999865889-9999999809986899756679999999999864984587652688888658


No 417
>COG3749 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.86  E-value=12  Score=17.96  Aligned_cols=83  Identities=22%  Similarity=0.362  Sum_probs=59.6

Q ss_pred             HHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEE-CCCC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
Q ss_conf             7764982599852333447899886201402899830-6776-5332201357789986543138652698158998899
Q gi|254780975|r  106 IHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVN-PGFG-GQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNI  183 (224)
Q Consensus       106 i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~-PG~~-Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i  183 (224)
                      .++..-..|+-|.|+..++.+.++   +|.+-+..|. |-|. |.     .+++-.-||..+.- .-.|-.=|-|=.+.+
T Consensus        48 ~rs~~~~lgV~l~Pddeve~L~~~---l~~lalVAv~FP~F~DGR-----gyS~A~LLR~RlG~-~GelRAVGDVLiDql  118 (167)
T COG3749          48 RRSRAGRLGVWLAPDDEVEALAPD---LDRLALVAVDFPAFRDGR-----GYSKAELLRSRLGF-QGELRAVGDVLIDQL  118 (167)
T ss_pred             HHCCCCCCEEEECCCCCHHHHHCC---CCCCEEEEEECCCEECCC-----CCHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_conf             312366623566786556565245---444607998355340686-----40489998644154-401243455776156


Q ss_pred             HHHHHCCCCEEEEC
Q ss_conf             99996799899974
Q gi|254780975|r  184 KSLVQAGADLLVVG  197 (224)
Q Consensus       184 ~~l~~~Gad~~V~G  197 (224)
                      +-+..+|.|.|-+-
T Consensus       119 ~~M~RcGFDaFav~  132 (167)
T COG3749         119 PFMLRCGFDAFAVR  132 (167)
T ss_pred             HHHHHCCCCEEEEC
T ss_conf             89997187401105


No 418
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=62.67  E-value=13  Score=17.94  Aligned_cols=58  Identities=14%  Similarity=0.149  Sum_probs=27.1

Q ss_pred             HHHHHHHHCCCCEEEEEEEEEECCHH---HHHHCCCCCCEEEEECCCCC--CHHHHHHHHHHCCC
Q ss_conf             99998641256416856788512033---67640477607999706642--15899986776498
Q gi|254780975|r   52 DVIRSLRSYSDSVFDCHLMISSIDSH---INIIADAGCDIITFHPESSP--HIRRSLRTIHAMGK  111 (224)
Q Consensus        52 ~~i~~i~~~t~~~~dvHLMv~~P~~~---i~~~~~~g~d~i~~H~E~~~--~~~~~i~~i~~~g~  111 (224)
                      +.+++-.+.+  ..|+-+-...|..-   +-+..++|.+.+.+-.|..+  |-.++.++.++.|.
T Consensus        55 ~tV~EA~~~~--~a~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~  117 (293)
T COG0074          55 NTVEEAVKET--GANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGT  117 (293)
T ss_pred             HHHHHHHHHH--CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf             9999998702--89779996481778999999985799579999599988899999999986697


No 419
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=62.23  E-value=12  Score=18.13  Aligned_cols=174  Identities=18%  Similarity=0.303  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHCC-----CCEEEEEEECCEECCCCCCCHHHHHH----HHHCCC-CE--EEEEEEEEECCH----HHHH
Q ss_conf             99999999999659-----98999973426345843417899998----641256-41--685678851203----3676
Q gi|254780975|r   17 SRLGEEISNITKAG-----AKQIHFDVMDGCFVPNISFGADVIRS----LRSYSD-SV--FDCHLMISSIDS----HINI   80 (224)
Q Consensus        17 ~~l~~~i~~l~~~~-----~d~iHiDImDg~fvpn~~~~~~~i~~----i~~~t~-~~--~dvHLMv~~P~~----~i~~   80 (224)
                      ..|.++++......     ++.+|+  --|  .|++ ++++.++.    |++.-+ ..  .++-+-+ ||..    .++.
T Consensus        69 ~aL~~Ei~~~~~~~~~~~~v~ti~~--GGG--TPsl-L~~~~l~~ll~~l~~~~~~~~~~~EitiE~-nP~~~~~e~~~~  142 (416)
T COG0635          69 DALLEEIELVAALLGGQREVKTIYF--GGG--TPSL-LSPEQLERLLKALRELFNDLDPDAEITIEA-NPGTVEAEKFKA  142 (416)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEE--CCC--CCCC-CCHHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCCCCCHHHHHH
T ss_conf             9999999998862278872789997--698--3267-799999999999999723578882799950-888668999999


Q ss_pred             HCCCCCCEEEEECCCCC--------------CHHHHHHHHHHCCC-EEEEEEE---CCCCHHHHHHHHHH-----CCEEE
Q ss_conf             40477607999706642--------------15899986776498-2599852---33344789988620-----14028
Q gi|254780975|r   81 IADAGCDIITFHPESSP--------------HIRRSLRTIHAMGK-KTGVAIN---PETPVAILEDVIDE-----IDMIL  137 (224)
Q Consensus        81 ~~~~g~d~i~~H~E~~~--------------~~~~~i~~i~~~g~-k~Giai~---p~T~~~~i~~~l~~-----~D~vl  137 (224)
                      +.++|+++|++=.-+-+              .....+..+++.|. .+-+-|-   |....+.+..-+..     .|.|-
T Consensus       143 l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis  222 (416)
T COG0635         143 LKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLS  222 (416)
T ss_pred             HHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             99829877986014599899997478887899999999998638974788724389999999999999999834998786


Q ss_pred             EE--EEECCC-------CCCCCCCHHHHHHH---HHHHHHHCCCC-EEE-----EECCCCHHHHHHHHHCCCCEEEEC-H
Q ss_conf             99--830677-------65332201357789---98654313865-269-----815899889999996799899974-2
Q gi|254780975|r  138 IM--TVNPGF-------GGQQLIESTIPKIR---QAKALIGKRSI-SLE-----VDGGVTSRNIKSLVQAGADLLVVG-S  198 (224)
Q Consensus       138 iM--~V~PG~-------~Gq~f~~~~l~kI~---~l~~~~~~~~~-~I~-----vDGGvn~~~i~~l~~~Gad~~V~G-s  198 (224)
                      +-  ++.|+.       .|+ ..|..-.+..   ...+.+.+.++ .++     -.|+-...|.......  |.+=.| |
T Consensus       223 ~y~L~~~p~t~~~~~~~~~~-~lP~~d~~~~~~~~~~e~L~~~Gy~~yeisnfa~~~~e~~hNl~yw~~~--~~lGiG~g  299 (416)
T COG0635         223 LYSLAIEPGTKFAQRKIKGK-ALPDEDEKADMYELVEELLEKAGYRQYEISNFAKPGGECRHNLQYWETK--DYLGIGAG  299 (416)
T ss_pred             EEEEEECCCCHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCHHEECHHHCCCCHHHHHHHCCCCCC--CEEEECCC
T ss_conf             46268658856766233577-8998689999999999999977964106123127647777665156479--71786677


Q ss_pred             H
Q ss_conf             6
Q gi|254780975|r  199 S  199 (224)
Q Consensus       199 a  199 (224)
                      |
T Consensus       300 A  300 (416)
T COG0635         300 A  300 (416)
T ss_pred             C
T ss_conf             0


No 420
>KOG0053 consensus
Probab=62.13  E-value=13  Score=17.88  Aligned_cols=131  Identities=19%  Similarity=0.206  Sum_probs=67.3

Q ss_pred             HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECC--CCHHHHHHHHHH-CCEEEEEEEECCCCCCCCCCHH
Q ss_conf             6764047760799970664215899986776498259985233--344789988620-1402899830677653322013
Q gi|254780975|r   78 INIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPE--TPVAILEDVIDE-IDMILIMTVNPGFGGQQLIEST  154 (224)
Q Consensus        78 i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~--T~~~~i~~~l~~-~D~vliM~V~PG~~Gq~f~~~~  154 (224)
                      +..+...|..+|++-.--    ..+...+++-+.++|+..+.-  +.++.+...+.. .+.|-+=+  |+.-=+     .
T Consensus       109 l~~L~~~g~~iV~~~~~Y----~gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~~t~~V~~ES--PsNPll-----~  177 (409)
T KOG0053         109 LLHLLPAGDHIVATGDVY----GGTLRILRKFLPKFGGEGDFVDVDDLKKILKAIKENTKAVFLES--PSNPLL-----K  177 (409)
T ss_pred             HHHHCCCCCCEEEECCCC----CCHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHCCCCEEEEEEC--CCCCCC-----C
T ss_conf             998467898589717875----00999999999970935433041667889986266706999977--999750-----0


Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC-HHHHCCC-C---------HHHHHHHHHHHHHH
Q ss_conf             5778998654313865269815899889999996799899974-2663789-9---------89999999999997
Q gi|254780975|r  155 IPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVG-SSFFNQK-G---------EISYAKRLNDLKKS  219 (224)
Q Consensus       155 l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~G-saif~~~-d---------~~~~~~~l~~l~~~  219 (224)
                      ..-|.+++++-+++++.+.||.-+-.--.......|||++|-. +-.|+.. |         ..+.+++++.++..
T Consensus       178 v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~  253 (409)
T KOG0053         178 VPDIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQED  253 (409)
T ss_pred             CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf             4569999998741797899957767633367121388789985101444776635147761749999999999998


No 421
>PRK08185 hypothetical protein; Provisional
Probab=62.12  E-value=13  Score=17.88  Aligned_cols=183  Identities=16%  Similarity=0.186  Sum_probs=111.1

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHH---HHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf             70632588999999999996599899997342634584341789---999864125641685678851203367640477
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGAD---VIRSLRSYSDSVFDCHLMISSIDSHINIIADAG   85 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~---~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g   85 (224)
                      |++=+.|+..+.--++..++.+..-+ +-+-.+.. +  .+|..   .++.+.+..+.|+-+||==-.-...+....++|
T Consensus        16 ~AfNv~~~e~~~avi~AAee~~sPvI-iq~s~~~~-~--~~g~~~~~~~~~~a~~~~VpV~lHLDH~~~~e~~~~ai~~G   91 (283)
T PRK08185         16 GAFNVADSCFLRAVVEEAEANNAPAI-IAIHPNEL-D--FVGDDFFAYVRERAQRSPVPFVIHLDHGASVEDVMRAIRCG   91 (283)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCEE-EEECCCHH-H--HHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCC
T ss_conf             99888999999999999999787989-99381288-7--71199999999999877998999899999999999999829


Q ss_pred             CCEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEE----------EE--CCCCHHHHHHHHHH--CCEEEEEEE
Q ss_conf             607999706642---1---589998677649825----998----------52--33344789988620--140289983
Q gi|254780975|r   86 CDIITFHPESSP---H---IRRSLRTIHAMGKKT----GVA----------IN--PETPVAILEDVIDE--IDMILIMTV  141 (224)
Q Consensus        86 ~d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Gia----------i~--p~T~~~~i~~~l~~--~D~vliM~V  141 (224)
                      -+.|-+-.-+.+   +   -.++.++++..|+-+    |-.          ..  ..|.++....+++.  +|.+   .|
T Consensus        92 FsSVM~DgS~lp~eeNi~~Tk~vv~~ah~~gv~VEaElG~vg~~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L---Av  168 (283)
T PRK08185         92 FTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSVEGGVSQIIYTDPEQAEDFVSRTGVDTL---AV  168 (283)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE---EE
T ss_conf             987986389899999999999999999865983899862367768776666420004899999999998799978---63


Q ss_pred             ECCCCCCC----CCC-HHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             06776533----220-135778998654313865269815--8998899999967998999742663
Q gi|254780975|r  142 NPGFGGQQ----LIE-STIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       142 ~PG~~Gq~----f~~-~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif  201 (224)
                      -.|..-..    ..| --+++++++++..   ++++-.-|  |+..+.++++++.|+.-+-.|+-+-
T Consensus       169 aiGn~HG~Yk~~~~p~l~~~~l~~I~~~~---~vPLVLHGgSG~~~e~i~~ai~~Gv~KiNi~T~l~  232 (283)
T PRK08185        169 AIGTAHGIYPKDKKPKLQMDILKEINERV---DIPLVLHGGSANPDAEIAESVTLGVGKINISSDMK  232 (283)
T ss_pred             ECCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHCCEEEEEECHHHH
T ss_conf             32554555578898423789999999864---99989758999999999999986937998486799


No 422
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=60.77  E-value=14  Score=17.73  Aligned_cols=153  Identities=20%  Similarity=0.304  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHC-----CCCEEEEEEECCEECCCCCCCHHH----HHHHHHCCCCE--EEEEEEEEECC----HHHHHH
Q ss_conf             9999999999965-----998999973426345843417899----99864125641--68567885120----336764
Q gi|254780975|r   17 SRLGEEISNITKA-----GAKQIHFDVMDGCFVPNISFGADV----IRSLRSYSDSV--FDCHLMISSID----SHINII   81 (224)
Q Consensus        17 ~~l~~~i~~l~~~-----~~d~iHiDImDg~fvpn~~~~~~~----i~~i~~~t~~~--~dvHLMv~~P~----~~i~~~   81 (224)
                      ..|.+|++...+.     .++.+|+  -=|+  |++ ++++.    +..|++..++.  .|+-+-+ ||.    .++..+
T Consensus        85 ~~L~~Ei~~~~~~~~~~~~v~ti~~--GGGT--Ps~-L~~~~l~~ll~~l~~~f~~~~~~EitiE~-nP~~~~~~~l~~l  158 (453)
T PRK13347         85 AALIREIRLVAALLPQRRRVSQLHW--GGGT--PTI-LNPDQFERLMAALRDAFDFAPEAEIAVEI-DPRTVTAEMLQAL  158 (453)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEE--CCCC--HHH-CCHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCCCCCHHHHHHH
T ss_conf             9999999998876278980789997--8848--285-99999999999999758999996699986-7786899999999


Q ss_pred             CCCCCCEEEEECCCC--------------CCHHHHHHHHHHCCCE-EEEEE---ECCCCHHHHHHHHHH-----CCEEEE
Q ss_conf             047760799970664--------------2158999867764982-59985---233344789988620-----140289
Q gi|254780975|r   82 ADAGCDIITFHPESS--------------PHIRRSLRTIHAMGKK-TGVAI---NPETPVAILEDVIDE-----IDMILI  138 (224)
Q Consensus        82 ~~~g~d~i~~H~E~~--------------~~~~~~i~~i~~~g~k-~Giai---~p~T~~~~i~~~l~~-----~D~vli  138 (224)
                      .++|++++++=.-+.              ++..+.++.+|+.|.. +.+-|   -|+..++.+..=+..     .|.|-+
T Consensus       159 ~~~GvNRlSlGVQsfd~~vl~~lgR~h~~~~~~~av~~ar~~Gf~~iniDLIyGlP~QT~~~~~~tL~~~~~l~pdhiS~  238 (453)
T PRK13347        159 AALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAV  238 (453)
T ss_pred             HHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             86498658871345787899982598999999999999998189865555552489998999999999998319997885


Q ss_pred             EE--EECC-CCCCCCCC-----H---HHHHHHHHHHHHHCCCCE-EEEE
Q ss_conf             98--3067-76533220-----1---357789986543138652-6981
Q gi|254780975|r  139 MT--VNPG-FGGQQLIE-----S---TIPKIRQAKALIGKRSIS-LEVD  175 (224)
Q Consensus       139 M~--V~PG-~~Gq~f~~-----~---~l~kI~~l~~~~~~~~~~-I~vD  175 (224)
                      -+  ..|+ +..|...+     .   ..+......+.+.+.++. +++|
T Consensus       239 Y~l~~~p~~~~~qr~i~~~~LP~~~~~~~m~~~a~~~L~~~GY~~y~i~  287 (453)
T PRK13347        239 FGYAHVPSRRKNQRLIDEAALPDAEERLRQARAAADRLLAAGYVPIGLD  287 (453)
T ss_pred             CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECH
T ss_conf             2320265323565325767895999999999999999996793895143


No 423
>PRK12679 cbl transcriptional regulator Cbl; Reviewed
Probab=60.53  E-value=14  Score=17.70  Aligned_cols=139  Identities=17%  Similarity=0.260  Sum_probs=68.5

Q ss_pred             HHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH
Q ss_conf             899998641-2564168567885120336764047760799970664215899986776498259985233344789988
Q gi|254780975|r   51 ADVIRSLRS-YSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDV  129 (224)
Q Consensus        51 ~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~  129 (224)
                      |..+..+++ +++..+++|  ..+|....+.+....+|.-.+--....++.  +....-......+...++.|+..-.++
T Consensus       109 P~~l~~F~~~~P~v~l~l~--~~~~~~i~~~l~~g~~Dl~i~~~~~~~~p~--l~~~p~~~~~~~lvvp~~HpLa~~~~v  184 (316)
T PRK12679        109 PEVIKAFRELFPEVRLELI--QGTPQEIATLLQNGEADIGIASERLSNDPQ--LVAFPWFRWHHSLLVPLDHPLTQITPL  184 (316)
T ss_pred             CHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHCCCCCEEECCCCCCCCCC--CEEEEEEECCEEEEECCCCCCCCCCCC
T ss_conf             1999999986899538998--478799999998799885222467789976--079980553413560189951248998


Q ss_pred             -HHHC-CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             -6201-4028998306776533220135778998654313865269815899889999996799899974266378
Q gi|254780975|r  130 -IDEI-DMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQ  203 (224)
Q Consensus       130 -l~~~-D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~  203 (224)
                       +.++ ++=++ +-++|+++....+..+.+-    .+  +.++-.+++   +.+++..++.+|.=+-++-...+..
T Consensus       185 sl~~L~~~plI-~~~~g~~~R~~id~~f~~~----G~--~p~i~~e~~---~~~~i~~~V~~GlGvailp~~a~~~  250 (316)
T PRK12679        185 TLESIAKWPLI-TYRQGITGRSRIDDAFARK----GL--LADIVLSAQ---DSDVIKTYVALGLGIGLVAEQSSGE  250 (316)
T ss_pred             CHHHHCCCCEE-EECCCCHHHHHHHHHHHHC----CC--CCCEEEEEC---CHHHHHHHHHHCCCEEECHHHHCCC
T ss_conf             99998799989-5089984999999999977----99--997799999---8999999999899099701445075


No 424
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=60.50  E-value=14  Score=17.70  Aligned_cols=123  Identities=15%  Similarity=0.191  Sum_probs=70.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCH---HHHHHHHHCCCCEEEEEEEEEE---CCHHHHHHCCCCCC
Q ss_conf             58899999999999659989999734263458434178---9999864125641685678851---20336764047760
Q gi|254780975|r   14 ADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGA---DVIRSLRSYSDSVFDCHLMISS---IDSHINIIADAGCD   87 (224)
Q Consensus        14 ~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~---~~i~~i~~~t~~~~dvHLMv~~---P~~~i~~~~~~g~d   87 (224)
                      .+..+..+.|+++.+.|+..  +.+.=|-  |  .+-+   +++++.+   +.-+.+.|-++-   -+..++.+.++|.+
T Consensus        47 Ls~~e~~~~id~l~~~Gv~~--v~~tGGE--P--llr~D~~ei~~~a~---~~G~~~~l~TNG~lit~~~a~~L~~~gl~  117 (375)
T PRK05301         47 LSTAEWIRVLREARALGVLQ--LHFSGGE--P--LLRKDLEELVAHAR---RLGLYTNLITSGVGLTEARLAALKAAGLD  117 (375)
T ss_pred             CCHHHHHHHHHHHHHCCCCE--EEECCCC--C--CCCCCHHHHHHHHH---HCCCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             99999999999999869988--9961865--2--45668999999999---76975899606745579999999850998


Q ss_pred             EEEEECCCCC---------------CHHHHHHHHHHCCCEEEEEEECC-CCHHHHHHHHHH-----CCEEEEEEEEC-CC
Q ss_conf             7999706642---------------15899986776498259985233-344789988620-----14028998306-77
Q gi|254780975|r   88 IITFHPESSP---------------HIRRSLRTIHAMGKKTGVAINPE-TPVAILEDVIDE-----IDMILIMTVNP-GF  145 (224)
Q Consensus        88 ~i~~H~E~~~---------------~~~~~i~~i~~~g~k~Giai~p~-T~~~~i~~~l~~-----~D~vliM~V~P-G~  145 (224)
                      .|.+......               ...+.++.+++.|+++++..... ..++.+..+++.     ++++.++.+.| |.
T Consensus       118 ~v~vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~i~~ti~r~N~~~l~~i~~la~~lGv~~~~l~~~~~~Gr  197 (375)
T PRK05301        118 HIQLSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGADRLELANTQYYGW  197 (375)
T ss_pred             EEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECC
T ss_conf             89995677987787776378862999999999999749816999872305688899999999972998289876567510


No 425
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=60.45  E-value=14  Score=17.69  Aligned_cols=79  Identities=23%  Similarity=0.307  Sum_probs=37.0

Q ss_pred             EEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCC-----CHHHHHHHHHHCCEEEEEEEECC
Q ss_conf             8851203367640477607999706642158999867764982599852333-----44789988620140289983067
Q gi|254780975|r   70 MISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPET-----PVAILEDVIDEIDMILIMTVNPG  144 (224)
Q Consensus        70 Mv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T-----~~~~i~~~l~~~D~vliM~V~PG  144 (224)
                      +.+|| .|.+.+.++|...|--..|+....-+-+ ..|+.=.++|+-+-|++     +.+........+-|=+++----|
T Consensus        85 LSEna-~FA~~~~~~Gi~fIGP~~~~i~~~GdK~-~ar~~a~~agVPvvpgs~~~~~~~~ea~~~a~~iGyPv~iKA~~G  162 (449)
T PRK08591         85 LSENA-DFAEICEDSGFTFIGPSAETIRLMGDKV-TAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKATAG  162 (449)
T ss_pred             HHCCH-HHHHHHHHCCCEEECCCHHHHHHHHCHH-HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf             32589-9999999879999992999999876989-999999983999788876655689999999987499669885268


Q ss_pred             CCCCCC
Q ss_conf             765332
Q gi|254780975|r  145 FGGQQL  150 (224)
Q Consensus       145 ~~Gq~f  150 (224)
                      -+|...
T Consensus       163 GGGrGm  168 (449)
T PRK08591        163 GGGRGM  168 (449)
T ss_pred             CCCCEE
T ss_conf             987769


No 426
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=60.32  E-value=14  Score=17.68  Aligned_cols=201  Identities=15%  Similarity=0.214  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH----CCCCEEEEE------EEEEECCH----------
Q ss_conf             9999999999965998999973426345843417899998641----256416856------78851203----------
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS----YSDSVFDCH------LMISSIDS----------   76 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~----~t~~~~dvH------LMv~~P~~----------   76 (224)
                      .-+++.+++..+.|++.+++=.---+....-.+..+.++.++.    +...++-+|      |+..+|+.          
T Consensus        10 ~g~~~~~~~a~~iG~~~~qif~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~HapY~iNlas~~~~~r~~s~~~l~~   89 (279)
T cd00019          10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKD   89 (279)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHH
T ss_conf             63999999999809989999778988768899998999999999997699737853560016899988999999999999


Q ss_pred             HHHHHCCCCCCEEEEECCCCCC------HHH---HHHHHH----HCCCEEEEEEECC------CCHHHHHHHHHHCCE--
Q ss_conf             3676404776079997066421------589---998677----6498259985233------344789988620140--
Q gi|254780975|r   77 HINIIADAGCDIITFHPESSPH------IRR---SLRTIH----AMGKKTGVAINPE------TPVAILEDVIDEIDM--  135 (224)
Q Consensus        77 ~i~~~~~~g~d~i~~H~E~~~~------~~~---~i~~i~----~~g~k~Giai~p~------T~~~~i~~~l~~~D~--  135 (224)
                      -++.+.+.|+..+.+|.-+...      +.+   .++.+-    ..+++..|=-.++      +.++.+..+++.++.  
T Consensus        90 ~l~~a~~lG~~~vv~HpG~~~~~~~~~~~~~~~~~l~~i~~~a~~~~v~l~lEn~ag~g~~~g~~~eel~~i~~~~~~~~  169 (279)
T cd00019          90 EIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIKEKP  169 (279)
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHCCCCC
T ss_conf             99999981998899678646788889999999999999998714578579983489877622117999999998456877


Q ss_pred             EEEEEEECC--C-CCCCCC--CHHHHHHHHHHHHHHCC----------CCE--EEEE-------CCCC-HHHHHHHHHCC
Q ss_conf             289983067--7-653322--01357789986543138----------652--6981-------5899-88999999679
Q gi|254780975|r  136 ILIMTVNPG--F-GGQQLI--ESTIPKIRQAKALIGKR----------SIS--LEVD-------GGVT-SRNIKSLVQAG  190 (224)
Q Consensus       136 vliM~V~PG--~-~Gq~f~--~~~l~kI~~l~~~~~~~----------~~~--I~vD-------GGvn-~~~i~~l~~~G  190 (224)
                      -+-+|.+.+  | +|-.+.  ....+-++++.+..+..          ...  --.|       |-|. .+....+.+.+
T Consensus       170 ~~gvclDt~H~~aag~di~~~~~~~~~~~~~~~~iG~~~i~~iHlnDS~~~~gs~~DrH~~iG~G~I~~~~~~~~l~~~~  249 (279)
T cd00019         170 RVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELGSGKDRHEPIGEGDIDGEELFKELKKDP  249 (279)
T ss_pred             CEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             64898433776541478786888999999999871833350688645778777886466887896888799999998388


Q ss_pred             CC-E-EEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             98-9-9974266378998999999999999
Q gi|254780975|r  191 AD-L-LVVGSSFFNQKGEISYAKRLNDLKK  218 (224)
Q Consensus       191 ad-~-~V~Gsaif~~~d~~~~~~~l~~l~~  218 (224)
                      .. . +++-+--- .++.....+.+.-|++
T Consensus       250 ~~~~p~IlEtP~~-~~~~~~~~~~i~~lr~  278 (279)
T cd00019         250 YQNIPLILETPSE-NRDAAKIKKEIKLLRK  278 (279)
T ss_pred             CCCCCEEEECCCC-CCCHHHHHHHHHHHHH
T ss_conf             4698789968999-8760689999999962


No 427
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=59.71  E-value=14  Score=17.61  Aligned_cols=127  Identities=17%  Similarity=0.236  Sum_probs=73.2

Q ss_pred             CEEEEEEECCEECCCCCC-CHHHHHHHHHCCCC-E------------EEEEEEEEECC-------HHHHHHCCCCCCEEE
Q ss_conf             899997342634584341-78999986412564-1------------68567885120-------336764047760799
Q gi|254780975|r   32 KQIHFDVMDGCFVPNISF-GADVIRSLRSYSDS-V------------FDCHLMISSID-------SHINIIADAGCDIIT   90 (224)
Q Consensus        32 d~iHiDImDg~fvpn~~~-~~~~i~~i~~~t~~-~------------~dvHLMv~~P~-------~~i~~~~~~g~d~i~   90 (224)
                      .|++++--+|.....-.- ....++.-++.... |            -++|-+..+|.       ..+..+.+.|.|=|.
T Consensus        30 ~W~~l~~~~g~l~~~~d~~~~~~~~~~~~~~~v~~lv~n~~~~~~~~~~~~~lL~d~~~R~~~i~~i~~~~~~~~~dGi~  109 (298)
T cd06549          30 EWLNLTGPEGRIDVFVDPQGVAIIAAAKAHPKVLPLVQNISGGAWDGKNIARLLADPSARAKFIANIAAYLERNQADGIV  109 (298)
T ss_pred             EEEEEECCCCCEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             78999838995750468016899999871795268985146778987899998379999999999999999982998399


Q ss_pred             EECCCCCC-----HHHHH----HHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEE-------CC-CCCCCCCCH
Q ss_conf             97066421-----58999----867764982599852333447899886201402899830-------67-765332201
Q gi|254780975|r   91 FHPESSPH-----IRRSL----RTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVN-------PG-FGGQQLIES  153 (224)
Q Consensus        91 ~H~E~~~~-----~~~~i----~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~-------PG-~~Gq~f~~~  153 (224)
                      +-+|....     ...++    ..+++.|.+..+++-+.+..-.+..+.+.+|++.+|+=+       || -+.+++.+.
T Consensus       110 iD~E~~~~~d~~~~~~fv~eL~~~l~~~g~~l~v~vp~~~~~~d~~~l~~~~D~v~lMtYD~h~~~~~pGPvA~~~Wv~~  189 (298)
T cd06549         110 LDFEELPADDLPKYVAFLSELRRRLPAQGKQLTVTVPADEADWNLKALARNADKLILMAYDEHYQGGAPGPIASQDWFES  189 (298)
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf             98678998999999999999999986629889999847986427799986578999982035888898896475668999


Q ss_pred             HHHHH
Q ss_conf             35778
Q gi|254780975|r  154 TIPKI  158 (224)
Q Consensus       154 ~l~kI  158 (224)
                      +++..
T Consensus       190 ~l~~~  194 (298)
T cd06549         190 NLAQA  194 (298)
T ss_pred             HHHHH
T ss_conf             99999


No 428
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=59.05  E-value=14  Score=17.54  Aligned_cols=68  Identities=18%  Similarity=0.327  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCC-------HHHHH----HHHHCCCCEEEEEEEEEECCHHHHHHCCCC
Q ss_conf             9999999999965998999973426345843417-------89999----864125641685678851203367640477
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG-------ADVIR----SLRSYSDSVFDCHLMISSIDSHINIIADAG   85 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~-------~~~i~----~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g   85 (224)
                      .-+.++++.|.++|++++++|=      |.++-.       .+.+.    ....-.+.+..+|+..  |. +.+.+.+.+
T Consensus       151 ~~~~~e~~~l~~~g~~~iqiDE------P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vH~C~--~~-~~~~l~~~~  221 (321)
T cd03310         151 EFLREQVKELKNRGIVVVQIDE------PSLGAVGAGAFEDLEIVDAALEEVSLKSGGDVEVHLCA--PL-DYEALLELG  221 (321)
T ss_pred             HHHHHHHHHHHHCCCCEEEECC------HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEC--CC-CHHHHHHCC
T ss_conf             9999999999974998899658------46641674212269999999997155679867999805--98-899998579


Q ss_pred             CCEEEEEC
Q ss_conf             60799970
Q gi|254780975|r   86 CDIITFHP   93 (224)
Q Consensus        86 ~d~i~~H~   93 (224)
                      +|.+.|-.
T Consensus       222 ~d~l~~d~  229 (321)
T cd03310         222 VDVIGFDA  229 (321)
T ss_pred             CCEEEEEE
T ss_conf             97168875


No 429
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=58.95  E-value=15  Score=17.53  Aligned_cols=24  Identities=17%  Similarity=0.267  Sum_probs=8.9

Q ss_pred             EEEECCCC----CCHHHHHHHHHHCCCE
Q ss_conf             99970664----2158999867764982
Q gi|254780975|r   89 ITFHPESS----PHIRRSLRTIHAMGKK  112 (224)
Q Consensus        89 i~~H~E~~----~~~~~~i~~i~~~g~k  112 (224)
                      ..+|.|+.    +++.++-+.++++++.
T Consensus       136 ~~vH~ETSTGvln~l~~i~~~~~~~~~l  163 (368)
T PRK13479        136 ALVHCETTTGILNPLDEIAAVVKRHGKR  163 (368)
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf             9985067720316799999999854986


No 430
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=58.88  E-value=15  Score=17.52  Aligned_cols=98  Identities=16%  Similarity=0.083  Sum_probs=61.8

Q ss_pred             HHHHHHHCCC-EEEEEEECCCCHHHHHHHHHHCCE---EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE----EE
Q ss_conf             9986776498-259985233344789988620140---289983067765332201357789986543138652----69
Q gi|254780975|r  102 SLRTIHAMGK-KTGVAINPETPVAILEDVIDEIDM---ILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS----LE  173 (224)
Q Consensus       102 ~i~~i~~~g~-k~Giai~p~T~~~~i~~~l~~~D~---vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~----I~  173 (224)
                      .-.|.+..+. ++++++.-.+..+.+.+-+.....   -.+.+|.|-- |     .....++++++.+++.+++    +.
T Consensus       224 ~~~~~e~~~~~~~~i~ltD~~~~~~~~~~~~~~~~~~~~~~~GVR~DS-G-----d~~~~~~kvr~~ld~~G~~~~~Ii~  297 (405)
T COG1488         224 FRAWAETYPGDKLLIALTDTYLDDAFLNAIKVAKALGDKRLDGVRLDS-G-----DPRELSEKVRAHLDKLGYDPVKIIV  297 (405)
T ss_pred             HHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCC-C-----CHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             999999768997289998506527788767888861446633897799-9-----9799999999999975998508998


Q ss_pred             EECCCCHHHHHHHHHCC--CCEEEECHHHHCCCC
Q ss_conf             81589988999999679--989997426637899
Q gi|254780975|r  174 VDGGVTSRNIKSLVQAG--ADLLVVGSSFFNQKG  205 (224)
Q Consensus       174 vDGGvn~~~i~~l~~~G--ad~~V~Gsaif~~~d  205 (224)
                      -||+.-+..+..+...|  .|.+=+|+.+-++.+
T Consensus       298 Sdg~lde~~i~~l~~~g~~~d~FGvGT~L~~~~~  331 (405)
T COG1488         298 SDGLLDEKIIALLRAFGARNDAFGVGTNLTTAKP  331 (405)
T ss_pred             ECCCCHHHHHHHHHHHCCCCCEECCCHHHCCCCC
T ss_conf             3785358999999981787207656554314899


No 431
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=58.80  E-value=15  Score=17.51  Aligned_cols=138  Identities=14%  Similarity=0.198  Sum_probs=82.5

Q ss_pred             EEEEEECCHHHHHHCCCCCCEEEEECCCC----CCHHHHHHHH-HHCCCEEEEEEECCCCHH---HHHHHHHHCCEEEEE
Q ss_conf             67885120336764047760799970664----2158999867-764982599852333447---899886201402899
Q gi|254780975|r   68 HLMISSIDSHINIIADAGCDIITFHPESS----PHIRRSLRTI-HAMGKKTGVAINPETPVA---ILEDVIDEIDMILIM  139 (224)
Q Consensus        68 HLMv~~P~~~i~~~~~~g~d~i~~H~E~~----~~~~~~i~~i-~~~g~k~Giai~p~T~~~---~i~~~l~~~D~vliM  139 (224)
                      |+-+..|+....++...|-+...+-++..    .+....++.+ ...+...|+.+++++|-.   .+..+-+.+|.|   
T Consensus         4 d~~v~~~~~~~~~l~~l~~~~~~l~y~~~~~~~~D~~~l~e~~~~~~~i~~~i~l~~~s~~~~r~~~~kfr~~~dlI---   80 (229)
T COG1603           4 DFNVRWPELTALELERLGYTSGVLNYQKDALFSVDKNPLREEIYGKVKIYRGITLNAESPSQLRRLVKKFRSKVDLI---   80 (229)
T ss_pred             ECCCCCCCHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHCCEEEE---
T ss_conf             23677860788999970620248987605654312677777551365156668993388699999999650410599---


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE-------EECCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH--HHH
Q ss_conf             8306776533220135778998654313865269-------8158998899999967998999742663789989--999
Q gi|254780975|r  140 TVNPGFGGQQLIESTIPKIRQAKALIGKRSISLE-------VDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEI--SYA  210 (224)
Q Consensus       140 ~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~-------vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~~--~~~  210 (224)
                      .|.||--            +-.|.-..+..++|-       -|.|++..++..+.+.|+-.-++=+.++.+....  ...
T Consensus        81 ~V~~~~l------------kv~R~Av~~~rVDil~~p~~~r~~~gldh~~a~laa~~~valeisl~~ll~~~g~~Ra~~l  148 (229)
T COG1603          81 AVEPGSL------------KVNRAAVENKRVDILSHPETGRKDPGLDHVLARLAAEKGVALEISLRPLLRSSGYRRARLL  148 (229)
T ss_pred             EECCCCH------------HHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCHHHHHHHH
T ss_conf             9846868------------9999997546755897433357775523799999996293699854776504306789999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999978
Q gi|254780975|r  211 KRLNDLKKSA  220 (224)
Q Consensus       211 ~~l~~l~~~a  220 (224)
                      ..++++.+.+
T Consensus       149 ~~lr~~lrl~  158 (229)
T COG1603         149 SFLRSLLRLA  158 (229)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999998


No 432
>TIGR00742 yjbN TIM-barrel protein, yjbN family; InterPro: IPR004653   This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) although NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA . They show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=58.70  E-value=13  Score=17.82  Aligned_cols=129  Identities=16%  Similarity=0.256  Sum_probs=78.2

Q ss_pred             HHHCCCHHHHHHHHHHHHH-CCCCEEEEEEECCEE-CCCCCCC----------HHHHHHHHHCCCCEEEEE-------E-
Q ss_conf             0632588999999999996-599899997342634-5843417----------899998641256416856-------7-
Q gi|254780975|r   10 SILAADFSRLGEEISNITK-AGAKQIHFDVMDGCF-VPNISFG----------ADVIRSLRSYSDSVFDCH-------L-   69 (224)
Q Consensus        10 Sil~~d~~~l~~~i~~l~~-~~~d~iHiDImDg~f-vpn~~~~----------~~~i~~i~~~t~~~~dvH-------L-   69 (224)
                      =|-..|...+.+-++.+++ .|.|-+=+-|-=-.. |.|--||          .+.++..++.+++|+.|-       + 
T Consensus        60 Qlgg~dp~~l~~ca~i~e~h~gydEiNLNVGCPSdrvQng~fGACLMg~a~lVa~cv~~M~~~v~iPvtvK~RiGId~~s  139 (326)
T TIGR00742        60 QLGGSDPNDLAKCAKIAEKHRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVEIPVTVKHRIGIDELS  139 (326)
T ss_pred             EECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf             50789889999999999864587422156688312220444111111682368999999897157882242014756443


Q ss_pred             --EEEEC----CHHHHHHCCCC-CCEEEEECCC-------------CCCH-HHHHHHHHHCCCEEEEEEECC-CCHHHHH
Q ss_conf             --88512----03367640477-6079997066-------------4215-899986776498259985233-3447899
Q gi|254780975|r   70 --MISSI----DSHINIIADAG-CDIITFHPES-------------SPHI-RRSLRTIHAMGKKTGVAINPE-TPVAILE  127 (224)
Q Consensus        70 --Mv~~P----~~~i~~~~~~g-~d~i~~H~E~-------------~~~~-~~~i~~i~~~g~k~Giai~p~-T~~~~i~  127 (224)
                        .-++.    ..||+.....| +...++|+--             .+.| ...+..+|+-....-+.||-+ +..|.++
T Consensus       140 sdykndSYe~l~~Fv~~v~~~Gec~~FivHARkAwL~GlSPKeNR~IPpL~y~~VYqLKkdfp~L~i~INGGI~~~E~~k  219 (326)
T TIGR00742       140 SDYKNDSYEELCDFVEIVSGKGECQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIK  219 (326)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHH
T ss_conf             32232337899999998617886113468789998578886225787798724677652003210563357855359999


Q ss_pred             HHHHHCCEEEE
Q ss_conf             88620140289
Q gi|254780975|r  128 DVIDEIDMILI  138 (224)
Q Consensus       128 ~~l~~~D~vli  138 (224)
                      ..|.++|.|+|
T Consensus       220 ~HL~~vD~VMv  230 (326)
T TIGR00742       220 QHLSHVDGVMV  230 (326)
T ss_pred             HHHHHHHHHHH
T ss_conf             76556431130


No 433
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=58.48  E-value=15  Score=17.48  Aligned_cols=160  Identities=17%  Similarity=0.232  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHCCCCEEEE-------EEE-------------------CCEECCCCCCCHHHHHHHHHCCCCE--EEE
Q ss_conf             899999999999659989999-------734-------------------2634584341789999864125641--685
Q gi|254780975|r   16 FSRLGEEISNITKAGAKQIHF-------DVM-------------------DGCFVPNISFGADVIRSLRSYSDSV--FDC   67 (224)
Q Consensus        16 ~~~l~~~i~~l~~~~~d~iHi-------DIm-------------------Dg~fvpn~~~~~~~i~~i~~~t~~~--~dv   67 (224)
                      ...-++-.+.++++|.+.+.+       |..                   |-.|.-+-+| ..+-+.++.++.++  +=+
T Consensus        21 ~~treeR~~al~~AgyN~F~L~s~dV~IDlLTDSGT~AMSd~QwAamm~gDEsYAGs~sf-~~l~~~v~difg~~~viPt   99 (459)
T PRK13237         21 MTTREEREQAIKEAGYNTFLLRSEDVYIDLLTDSGTNAMSDKQWAGMMIGDEAYAGSRNF-YHLEATVQEYYGFKHVVPT   99 (459)
T ss_pred             CCCHHHHHHHHHHCCCCEECCCCCCEEEECEECCCCCCCCHHHHHHHHHCCHHHHCCCCH-HHHHHHHHHHCCCCEEEEC
T ss_conf             999999999999818983037656614665115884426799999987304555324018-9999999997299524066


Q ss_pred             EEEEEECCHH-HHHHCCCCCCEE--EEECCCCCCHHHHHHHHHHCCCEE-----EEE--------EECCCCHHHHHHHHH
Q ss_conf             6788512033-676404776079--997066421589998677649825-----998--------523334478998862
Q gi|254780975|r   68 HLMISSIDSH-INIIADAGCDII--TFHPESSPHIRRSLRTIHAMGKKT-----GVA--------INPETPVAILEDVID  131 (224)
Q Consensus        68 HLMv~~P~~~-i~~~~~~g~d~i--~~H~E~~~~~~~~i~~i~~~g~k~-----Gia--------i~p~T~~~~i~~~l~  131 (224)
                      | ----.|+. +..+.+.| +++  -.|.+++.      ..+...|.++     -=+        +.-+-+++.++.++.
T Consensus       100 H-QGRaAE~IL~~~l~k~G-~~vp~N~hFdTTr------ahie~~G~~~~dl~~~ea~d~~~~~pFKGN~Dl~kLe~~i~  171 (459)
T PRK13237        100 H-QGRGAENLLSRIAIKPG-QYVPGNMYFTTTR------YHQELNGGIFVDIIIDEAHDAQSLHPFKGNVDLDKLQKLID  171 (459)
T ss_pred             C-CCHHHHHHHHHHHCCCC-CEECCCCCCCCHH------HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             7-76668999999971589-8957886866408------99996598787413520258677889688779999999998


Q ss_pred             HC--CE--EEEEEE-ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
Q ss_conf             01--40--289983-0677653322013577899865431386526981589988999999
Q gi|254780975|r  132 EI--DM--ILIMTV-NPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLV  187 (224)
Q Consensus       132 ~~--D~--vliM~V-~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~  187 (224)
                      ..  |.  ..+|++ +=.-+|||+   +++.+++.+++.+++++.+..|..-=.||+--++
T Consensus       172 ~~g~~~I~~v~~tiTnN~~GGQPV---Sm~Nir~v~~la~~~gipl~lDaaRfaENAyFIk  229 (459)
T PRK13237        172 EVGAENIAYICLAVTVNLAGGQPV---SMANMRAVRELCDKHGIKVFFDATRCVENAYFIK  229 (459)
T ss_pred             HHCCCCEEEEEEEEEECCCCCCCC---CHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
T ss_conf             748556008999985268788064---6899999999999809969987667887689998


No 434
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830   Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=58.25  E-value=15  Score=17.45  Aligned_cols=140  Identities=19%  Similarity=0.178  Sum_probs=82.4

Q ss_pred             HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCC----------C-------HHHHHHHHHHCCCEE
Q ss_conf             89999864125641685678851203367640477607999706642----------1-------589998677649825
Q gi|254780975|r   51 ADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSP----------H-------IRRSLRTIHAMGKKT  113 (224)
Q Consensus        51 ~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~----------~-------~~~~i~~i~~~g~k~  113 (224)
                      .+.+|.|.+...+..|+==.+-=-.+=||.-++||+|.|+.-.-+++          .       ..+.++|+|++|..+
T Consensus        51 ~~aiK~I~~~vGLnAEI~~l~RA~k~DID~AidcgvdsIh~fiaTSpiH~KYKl~~K~~devle~~veAvEYAKEHGLiV  130 (371)
T TIGR02090        51 FEAIKKIAEEVGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKNKSRDEVLEKAVEAVEYAKEHGLIV  130 (371)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             78999999862896355101026731001564369877899804885787234888789999999999898775257355


Q ss_pred             EEEEECC--CCHHHHHHHHHH-----CCEEEEEEEECCCCCCCCCC-HHHHHHHHHHHHHHC-C--CCEEEEECCCCHHH
Q ss_conf             9985233--344789988620-----14028998306776533220-135778998654313-8--65269815899889
Q gi|254780975|r  114 GVAINPE--TPVAILEDVIDE-----IDMILIMTVNPGFGGQQLIE-STIPKIRQAKALIGK-R--SISLEVDGGVTSRN  182 (224)
Q Consensus       114 Giai~p~--T~~~~i~~~l~~-----~D~vliM~V~PG~~Gq~f~~-~~l~kI~~l~~~~~~-~--~~~I~vDGGvn~~~  182 (224)
                      -.+=-=.  |++++|-++.+.     .|+|.+= =+-|.-    .| .+.+-+|++++-.++ .  ++.|.=|=|.=.-|
T Consensus       131 EfSAEDATRtd~dfLIk~~k~A~eAGADRi~~~-DTVGV~----~P~km~~l~k~~k~~~kKd~~~sVHCHNDFGlAtAN  205 (371)
T TIGR02090       131 EFSAEDATRTDIDFLIKVFKKAEEAGADRINVA-DTVGVL----TPQKMEELIKKIKENVKKDLPVSVHCHNDFGLATAN  205 (371)
T ss_pred             EECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC-CCCCCC----CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
T ss_conf             317788765867899999871332167775507-855636----826799999999986358870588620860188999


Q ss_pred             HHHHHHCCCCEEE
Q ss_conf             9999967998999
Q gi|254780975|r  183 IKSLVQAGADLLV  195 (224)
Q Consensus       183 i~~l~~~Gad~~V  195 (224)
                      ----+.+||.-+=
T Consensus       206 si~gv~aGA~~vH  218 (371)
T TIGR02090       206 SIAGVLAGAEQVH  218 (371)
T ss_pred             HHHHHHCCCEEEE
T ss_conf             9999722835773


No 435
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=58.16  E-value=15  Score=17.44  Aligned_cols=164  Identities=13%  Similarity=0.166  Sum_probs=90.5

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHC-CCCEEEEEEEEEECC---------HHHHHHCCC
Q ss_conf             8899999999999659989999734263458434178999986412-564168567885120---------336764047
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY-SDSVFDCHLMISSID---------SHINIIADA   84 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~~P~---------~~i~~~~~~   84 (224)
                      ....+.+-.++..++++.-+-+             .|..++..++. ...++-+.--+.=|.         .-++...+.
T Consensus        20 T~~~i~~lc~~A~~~~~aaVCV-------------~P~~V~~a~~~L~~s~v~v~tVigFP~G~~~~~~K~~E~~~ai~~   86 (221)
T PRK00507         20 TEEDIDKLCEEAKEYGFASVCV-------------NPSYVKLAAELLKGSDVKVCTVIGFPLGASTTAVKAFEAKDAIAN   86 (221)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEE-------------CHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf             9999999999999879948998-------------989999999984489986557813699999576899999999985


Q ss_pred             CCCEEEEECCC-------CCCHHHHHHHHHHC--C--CEEEEEEECCCCHHHHHHHHH-----HCCEEEEEEEECCCCCC
Q ss_conf             76079997066-------42158999867764--9--825998523334478998862-----01402899830677653
Q gi|254780975|r   85 GCDIITFHPES-------SPHIRRSLRTIHAM--G--KKTGVAINPETPVAILEDVID-----EIDMILIMTVNPGFGGQ  148 (224)
Q Consensus        85 g~d~i~~H~E~-------~~~~~~~i~~i~~~--g--~k~Giai~p~T~~~~i~~~l~-----~~D~vliM~V~PG~~Gq  148 (224)
                      |+|-|-+=..-       .+...+.+..+++.  +  .|+-|-...-|+ +.+.....     -.|+|--   -.||+..
T Consensus        87 GAdEiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~Lt~-~ei~~a~~~~~~aGadfvKT---STGf~~~  162 (221)
T PRK00507         87 GADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGKVLKVIIETCLLTD-EEKVKACEICKEAGADFVKT---STGFSTG  162 (221)
T ss_pred             CCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH-HHHHHHHHHHHHHCCCEEEE---CCCCCCC
T ss_conf             9987774025999975848899999999998727673699974465999-99999999999829787860---5887889


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECHH
Q ss_conf             3220135778998654313865269815899-88999999679989997426
Q gi|254780975|r  149 QLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAGADLLVVGSS  199 (224)
Q Consensus       149 ~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~Gad~~V~Gsa  199 (224)
                         ..+.+.|+-+++..+. .+.|-+-|||+ .+++..++++|++++=..|+
T Consensus       163 ---gat~e~v~~m~~~~~~-~~giKasGGIrt~~~a~~~l~aGa~riGtS~~  210 (221)
T PRK00507        163 ---GATVEDVKLMRETVGP-RVGVKASGGIRTLEDALAMIEAGATRLGTSAG  210 (221)
T ss_pred             ---CCCHHHHHHHHHHHCC-CCEEECCCCCCCHHHHHHHHHHCCHHCCCCCH
T ss_conf             ---9899999999997287-86386778989999999999827513216758


No 436
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH).  DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS.  Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.  Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate.  These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=57.90  E-value=15  Score=17.42  Aligned_cols=145  Identities=17%  Similarity=0.221  Sum_probs=75.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC-C--------HHHHHHHHHCCCCEEEEEEEEEECC-HHHHHHC
Q ss_conf             2588999999999996599899997342634584341-7--------8999986412564168567885120-3367640
Q gi|254780975|r   13 AADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF-G--------ADVIRSLRSYSDSVFDCHLMISSID-SHINIIA   82 (224)
Q Consensus        13 ~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~-~--------~~~i~~i~~~t~~~~dvHLMv~~P~-~~i~~~~   82 (224)
                      ..+.....+..+.+.+.|+|.|-+=-.  .--|+... +        ...++.|++.++.++    -++.-. ..++...
T Consensus        20 ~~~~~~a~~~a~~~i~~GAdiIDIG~e--STrPg~~~i~~~eE~~Rl~pvl~~i~~~~~v~i----SIDT~~~~Va~~al   93 (258)
T cd00423          20 FLSLDKALEHARRMVEEGADIIDIGGE--STRPGAEPVSVEEELERVIPVLRALAGEPDVPI----SVDTFNAEVAEAAL   93 (258)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE----EEECCCHHHHHHHH
T ss_conf             789999999999999879999997987--789999747778888885005688742799609----99798889999999


Q ss_pred             CCCCCEEE-EECCCCCCHHHHHHHHHHCCCEEEEEEECCCC------------HHHHHHHHHH-CCEEE-------EEEE
Q ss_conf             47760799-97066421589998677649825998523334------------4789988620-14028-------9983
Q gi|254780975|r   83 DAGCDIIT-FHPESSPHIRRSLRTIHAMGKKTGVAINPETP------------VAILEDVIDE-IDMIL-------IMTV  141 (224)
Q Consensus        83 ~~g~d~i~-~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~------------~~~i~~~l~~-~D~vl-------iM~V  141 (224)
                      ++|+++|- +..... + .+.+..+.++++.+-+.-++.+|            ++.+..++.. ++...       =.-+
T Consensus        94 ~~G~~iINDVsg~~~-d-~~m~~~va~~~~~~ilmH~~~~p~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~Gi~~~~Iii  171 (258)
T cd00423          94 KAGADIINDVSGGRG-D-PEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIIL  171 (258)
T ss_pred             HCCCCEEECCHHHHC-C-HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEE
T ss_conf             859986824003106-5-57999999749988983057886556668986648999999999999999986999300887


Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             067765332201357789986543
Q gi|254780975|r  142 NPGFGGQQLIESTIPKIRQAKALI  165 (224)
Q Consensus       142 ~PG~~Gq~f~~~~l~kI~~l~~~~  165 (224)
                      +||++=.+-.+..+.-++.+..+.
T Consensus       172 DPGiGFgK~~~~n~~ll~~l~~~~  195 (258)
T cd00423         172 DPGIGFGKTEEHNLELLRRLDAFR  195 (258)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             477677888788999999799997


No 437
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=57.64  E-value=15  Score=17.39  Aligned_cols=61  Identities=20%  Similarity=0.336  Sum_probs=45.4

Q ss_pred             CCCCEEEEECCCCC-CHHHHHHHHHHCCCEEEEE----EECCCCHHHHHHHHHHCCEEEEEEEECCCCCC
Q ss_conf             77607999706642-1589998677649825998----52333447899886201402899830677653
Q gi|254780975|r   84 AGCDIITFHPESSP-HIRRSLRTIHAMGKKTGVA----INPETPVAILEDVIDEIDMILIMTVNPGFGGQ  148 (224)
Q Consensus        84 ~g~d~i~~H~E~~~-~~~~~i~~i~~~g~k~Gia----i~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq  148 (224)
                      -.++++.+-+-++. ...+.++.+++.|.++|+.    +.| -|.+.+.+++..++.|+++=-+   .||
T Consensus       244 ~da~~~ii~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~P-fP~~~i~~~l~~~~~viVvE~n---~Gq  309 (350)
T PRK07119        244 DDAELVLVAYGTSSRIAKSAVDMAREEGIKVGLFRPITLWP-FPEKALEKLADKVKGFLSVEMS---NGQ  309 (350)
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHCCCEECEEEECEECC-CCHHHHHHHHHCCCEEEEECCC---CCH
T ss_conf             88999999956346899999999997598126687651068-9999999999469989998588---868


No 438
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=57.40  E-value=15  Score=17.36  Aligned_cols=197  Identities=13%  Similarity=0.069  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECC-EECCCCCCCHHHHHHHHHC-CCCEEEEEEEEE-----------ECC--------
Q ss_conf             9999999999965998999973426-3458434178999986412-564168567885-----------120--------
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDG-CFVPNISFGADVIRSLRSY-SDSVFDCHLMIS-----------SID--------   75 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg-~fvpn~~~~~~~i~~i~~~-t~~~~dvHLMv~-----------~P~--------   75 (224)
                      +.++++++.+.++|+|++-+-+-.. ...+.+.|+.+.+++|++. -+.-+.+|-|+-           +|.        
T Consensus        16 ~sw~e~f~~Ak~~Gfd~IE~siDe~d~~~~~l~~~~~~~~~i~~~~~~~gl~I~s~~~s~~~~~pl~s~d~~~r~~~le~   95 (284)
T PRK13210         16 LSWPERLVLAKECGFDFVEMSVDETDERLARLDWSKEERLELVKAIYETGVRIPSMCLSAHRRFPFGSRDEATRERALEI   95 (284)
T ss_pred             CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999999999869988999606754222578999899999999999829835664155666899999898999999999


Q ss_pred             --HHHHHHCCCCCCEEEEEC-----CCCC---------CHHHHHHHHHHCCCEEEEEEECC---CCHHHHHHHHHHCCEE
Q ss_conf             --336764047760799970-----6642---------15899986776498259985233---3447899886201402
Q gi|254780975|r   76 --SHINIIADAGCDIITFHP-----ESSP---------HIRRSLRTIHAMGKKTGVAINPE---TPVAILEDVIDEIDMI  136 (224)
Q Consensus        76 --~~i~~~~~~g~d~i~~H~-----E~~~---------~~~~~i~~i~~~g~k~Giai~p~---T~~~~i~~~l~~~D~v  136 (224)
                        +.++...+.|++.|.+..     |...         .+.+...++.++|+..++=.-..   .+++....+++.++.=
T Consensus        96 l~kaI~lA~~LGi~~I~l~g~dv~~~~~~~~~~~rf~e~l~~~~~~Ae~~gV~L~iE~~~~~f~~t~~~~~~~i~~v~sp  175 (284)
T PRK13210         96 MKKAIRLAQDLGIRTIQLAGYDVYYEEKDEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTPFMNSISKWKKWDEEIDSP  175 (284)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCCC
T ss_conf             99999999980997899688766668698899999999999999999983998999956765547799999999964998


Q ss_pred             EEEEEE--CCCCCCCCCCHHHHHHHHHHHHHHCCCCE-------------EEE---ECCCCH-HHHHHHHHCCCCE-EEE
Q ss_conf             899830--67765332201357789986543138652-------------698---158998-8999999679989-997
Q gi|254780975|r  137 LIMTVN--PGFGGQQLIESTIPKIRQAKALIGKRSIS-------------LEV---DGGVTS-RNIKSLVQAGADL-LVV  196 (224)
Q Consensus       137 liM~V~--PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~-------------I~v---DGGvn~-~~i~~l~~~Gad~-~V~  196 (224)
                      -+ .++  .|.. +.+..+..+-++.....+.+-.++             -.|   .|-|+. +-+..|.+.|-+. ++.
T Consensus       176 ~l-~v~~DiGn~-~~~g~d~~~ei~~~~~~I~~vHiKDt~~~~~~~~G~f~~vp~G~G~vDf~~~~~~L~~~gY~G~~~i  253 (284)
T PRK13210        176 WF-TVYPDVGNL-SAWGNDVWSELKLGIDRIAAIHLKDTYAVTETSPGQFRDVPFGEGCVDFVGIFKTLKELNYRGPFLI  253 (284)
T ss_pred             CE-EEEECCCCH-HHCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf             36-999545516-5417999999998644525887532435567888742005889876588999999998199632799


Q ss_pred             CHHHHCCCCHHHHHHHHHH
Q ss_conf             4266378998999999999
Q gi|254780975|r  197 GSSFFNQKGEISYAKRLND  215 (224)
Q Consensus       197 Gsaif~~~d~~~~~~~l~~  215 (224)
                      -=.==+.+||.+.+++-++
T Consensus       254 E~w~~~~~~~~~~i~~a~~  272 (284)
T PRK13210        254 EMWTEKAEEPVAEIIQARR  272 (284)
T ss_pred             EEECCCCCCHHHHHHHHHH
T ss_conf             9924899787999999999


No 439
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=56.62  E-value=16  Score=17.28  Aligned_cols=77  Identities=14%  Similarity=0.226  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHH---CCCCEEEEE------EEEEECCHH----------HH
Q ss_conf             99999999965998999973426345843417899998641---256416856------788512033----------67
Q gi|254780975|r   19 LGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRS---YSDSVFDCH------LMISSIDSH----------IN   79 (224)
Q Consensus        19 l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~---~t~~~~dvH------LMv~~P~~~----------i~   79 (224)
                      +.+.+++..+.|++.+++...--+.+....+.++.++.+++   ..++++=+|      |...+|+.+          ++
T Consensus        12 ~~~a~~~a~~~g~~~~QiF~~~pr~w~~~~~~~~~~~~f~~~~~~~~i~~~~Ha~YlINLas~~~e~~~kS~~~l~~el~   91 (273)
T smart00518       12 LYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIK   91 (273)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999985998999978898889999999999999999999839966864421004579988999999999999999


Q ss_pred             HHCCCCCCEEEEECCC
Q ss_conf             6404776079997066
Q gi|254780975|r   80 IIADAGCDIITFHPES   95 (224)
Q Consensus        80 ~~~~~g~d~i~~H~E~   95 (224)
                      .+...|++.+.+|.-+
T Consensus        92 ~~~~lG~~~vV~HpGs  107 (273)
T smart00518       92 RCEELGIKALVFHPGS  107 (273)
T ss_pred             HHHHHCCCEEEECCCC
T ss_conf             9998099858734531


No 440
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=56.43  E-value=16  Score=17.26  Aligned_cols=88  Identities=11%  Similarity=0.208  Sum_probs=56.0

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCC--
Q ss_conf             999999996599899997342634584341789999864125641685678851203367640477607999706642--
Q gi|254780975|r   20 GEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSP--   97 (224)
Q Consensus        20 ~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~--   97 (224)
                      +..+..+-..+..++|.-.  .+|-++-.|+.+  +.+..+|.-       --||..|.+.|.++|+.+++.-+++-+  
T Consensus        13 ~wy~~~l~~e~~~~~~~h~--~Tyg~q~~f~~~--~f~~~Ftae-------~wDP~eWar~fK~AGAKyvilvakHHDGF   81 (430)
T COG3669          13 EWYLAYLYQEGSPFYHFHP--NTYGDQEWFGGQ--EFPPRFTAE-------NWDPREWARLFKEAGAKYVILVAKHHDGF   81 (430)
T ss_pred             HHHHHHHHHHCCCEEECCC--CCCCCCCCCCCC--CCCCCCCCC-------CCCHHHHHHHHHHCCCCEEEEEEEECCCE
T ss_conf             8899987641483487044--555673346743--363204724-------58989999999971884799865403770


Q ss_pred             -------------------CH-HHHHHHHHHCCCEEEEEEE
Q ss_conf             -------------------15-8999867764982599852
Q gi|254780975|r   98 -------------------HI-RRSLRTIHAMGKKTGVAIN  118 (224)
Q Consensus        98 -------------------~~-~~~i~~i~~~g~k~Giai~  118 (224)
                                         |+ .+.-+.++++|..+||.++
T Consensus        82 aLw~t~ys~wnsvk~GpKrDlVgela~Avr~qGL~FGVy~s  122 (430)
T COG3669          82 ALWPTDYSVWNSVKRGPKRDLVGELAKAVREQGLRFGVYLS  122 (430)
T ss_pred             EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEC
T ss_conf             42366530001554077511899999999972871567604


No 441
>PRK07178 acetyl-CoA carboxylase; Validated
Probab=56.43  E-value=13  Score=17.89  Aligned_cols=79  Identities=15%  Similarity=0.229  Sum_probs=41.2

Q ss_pred             EEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCC-----CHHHHHHHHHHCCEEEEEEEECC
Q ss_conf             8851203367640477607999706642158999867764982599852333-----44789988620140289983067
Q gi|254780975|r   70 MISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPET-----PVAILEDVIDEIDMILIMTVNPG  144 (224)
Q Consensus        70 Mv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T-----~~~~i~~~l~~~D~vliM~V~PG  144 (224)
                      +.+|| .|.+.+.++|...|--..++....-+-. ..|+.-.++|+-+-|++     .++........+.|=+++----|
T Consensus        84 LSEn~-~FA~~~~~~gi~FIGPs~~~i~~~GdK~-~ar~~a~~~gvPv~pgs~~~v~~~eea~~~A~~iGyPV~lKAa~G  161 (471)
T PRK07178         84 LSENA-ELAEICAERGIKFIGPSADVIRRMGDKT-EARRSMIKAGVPVTPGSEGNLADIDEALAEAERIGYPVMLKATSG  161 (471)
T ss_pred             HHCCH-HHHHHHHHCCCEEECCCHHHHHHHHCHH-HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf             11598-9999999789989995999999874839-899999986998268968865669999999986698158632026


Q ss_pred             CCCCCC
Q ss_conf             765332
Q gi|254780975|r  145 FGGQQL  150 (224)
Q Consensus       145 ~~Gq~f  150 (224)
                      .+|...
T Consensus       162 GGGrGm  167 (471)
T PRK07178        162 GGGRGI  167 (471)
T ss_pred             CCCCCE
T ss_conf             876644


No 442
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=56.30  E-value=12  Score=17.94  Aligned_cols=26  Identities=38%  Similarity=0.676  Sum_probs=21.2

Q ss_pred             EEEEECCCCHH-HHHHHHHCCCCEEEE
Q ss_conf             26981589988-999999679989997
Q gi|254780975|r  171 SLEVDGGVTSR-NIKSLVQAGADLLVV  196 (224)
Q Consensus       171 ~I~vDGGvn~~-~i~~l~~~Gad~~V~  196 (224)
                      ...+|||+... =+..+.+.|+|.+|+
T Consensus       146 ~~y~DGG~~~n~Pi~~~~~~g~~~ivv  172 (175)
T cd07205         146 QLLVDGGVLNNLPVDVLRELGADIIIA  172 (175)
T ss_pred             EEEEECCCCCCCCHHHHHHCCCCEEEE
T ss_conf             899967807653299999879498999


No 443
>PRK05481 lipoyl synthase; Provisional
Probab=56.06  E-value=16  Score=17.22  Aligned_cols=129  Identities=20%  Similarity=0.281  Sum_probs=63.2

Q ss_pred             EEECCHHHHHHCCCCCCEEEEECCCCCC--------HHHHHHHHHHCCCEEEE-EEECCCC--HHH-HHHHHHH-CCEE-
Q ss_conf             8512033676404776079997066421--------58999867764982599-8523334--478-9988620-1402-
Q gi|254780975|r   71 ISSIDSHINIIADAGCDIITFHPESSPH--------IRRSLRTIHAMGKKTGV-AINPETP--VAI-LEDVIDE-IDMI-  136 (224)
Q Consensus        71 v~~P~~~i~~~~~~g~d~i~~H~E~~~~--------~~~~i~~i~~~g~k~Gi-ai~p~T~--~~~-i~~~l~~-~D~v-  136 (224)
                      -.+|.+..+.....|-+++.+-.-+-+|        ..+++..||+..-.+.+ +|-|+-.  .+. +..+++. .|.+ 
T Consensus        81 ~~EP~~vA~av~~m~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~iEvLiPDF~G~~~~~l~~v~~a~PdV~n  160 (289)
T PRK05481         81 PDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELSPGTTIEVLIPDFRGRKDAALEIVVAAPPDVFN  160 (289)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCHHHHH
T ss_conf             03079999999982897699963416666565549999999999855999779970721146999999999856717764


Q ss_pred             -EEE-------EEECCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCH----HHHHHHHHCCCCEEEECHHHHC
Q ss_conf             -899-------830677653322013577899865431386--52698158998----8999999679989997426637
Q gi|254780975|r  137 -LIM-------TVNPGFGGQQLIESTIPKIRQAKALIGKRS--ISLEVDGGVTS----RNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       137 -liM-------~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~--~~I~vDGGvn~----~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                       .+=       .|.|+..    -..+++-++.++++.+.--  -.|++-=|=+.    +++..|.++|+|++..|-++=-
T Consensus       161 HNiETV~rL~~~VRp~a~----Y~rSL~vL~~~k~~~p~~~TKSgiMvGLGEt~eEv~~~~~DL~~~gvdilTiGQYL~P  236 (289)
T PRK05481        161 HNLETVPRLYKRVRPGAD----YERSLELLKRAKELDPGIPTKSGLMVGLGETDEEVLEVMDDLRAHGVDILTIGQYLQP  236 (289)
T ss_pred             CCHHHHHHHCCCCCCCCH----HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             351310443623388233----8999999999997489982413567755788999999999999819989983403588


Q ss_pred             C
Q ss_conf             8
Q gi|254780975|r  203 Q  203 (224)
Q Consensus       203 ~  203 (224)
                      +
T Consensus       237 s  237 (289)
T PRK05481        237 S  237 (289)
T ss_pred             C
T ss_conf             8


No 444
>PRK12376 putative translaldolase; Provisional
Probab=55.80  E-value=16  Score=17.20  Aligned_cols=145  Identities=12%  Similarity=0.210  Sum_probs=82.9

Q ss_pred             HHHHHHHH-CCCCEEEEEEEEEECCHHHHH---HCCCCCCEEEEECCCC----CCHHHHHHHHHHCCCEEEEEE--ECCC
Q ss_conf             99998641-256416856788512033676---4047760799970664----215899986776498259985--2333
Q gi|254780975|r   52 DVIRSLRS-YSDSVFDCHLMISSIDSHINI---IADAGCDIITFHPESS----PHIRRSLRTIHAMGKKTGVAI--NPET  121 (224)
Q Consensus        52 ~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~---~~~~g~d~i~~H~E~~----~~~~~~i~~i~~~g~k~Giai--~p~T  121 (224)
                      ..++++.+ .++.|+.+-.+..+++..+++   +...|. .+.+-.-.+    ..-...++.+.+.|+++-+.+  ++.+
T Consensus        49 ~~~~~i~~~i~~~~is~EV~~~~~~~mi~qA~~l~~~~~-nv~VKIP~t~~~G~~~~~~ik~L~~~Gi~vnvTaifs~~Q  127 (238)
T PRK12376         49 AFAKEVLAEIPDYPISFEVFADDLETMEKEAEILASLGE-NVYVKIPITNTKGESTIPLIKKLSADGIKLNVTAIFTIEQ  127 (238)
T ss_pred             HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHH
T ss_conf             999999963899877999956877889999999997589-7799977857551899999999988799668999827999


Q ss_pred             CHHHHHHHHHHC-CEEEEEE-E--ECCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf             447899886201-4028998-3--067765332201357789986543138-6526981589988999999679989997
Q gi|254780975|r  122 PVAILEDVIDEI-DMILIMT-V--NPGFGGQQLIESTIPKIRQAKALIGKR-SISLEVDGGVTSRNIKSLVQAGADLLVV  196 (224)
Q Consensus       122 ~~~~i~~~l~~~-D~vliM~-V--~PG~~Gq~f~~~~l~kI~~l~~~~~~~-~~~I~vDGGvn~~~i~~l~~~Gad~~V~  196 (224)
                      -.....-.-... .||-... -  +-|..       ....|+++++++.++ +.+|-+--==+..++.++..+|+|++.+
T Consensus       128 a~~a~~A~a~~~a~yvSpfvGRi~D~G~D-------g~~~i~~~~~i~~~~~~tkILaASiR~~~~v~~a~~~GadiiTi  200 (238)
T PRK12376        128 VKEVVDALTPGVPSIVSVFAGRIADTGVD-------PLPLMKEALKICHQKPGVELLWASPRELYNIIQADQLGCDIITV  200 (238)
T ss_pred             HHHHHHHCCCCCCEEEEEECCHHHHCCCC-------CHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCEEEC
T ss_conf             99999852777882775121308655998-------27999999999842887499997148889999999869999984


Q ss_pred             CHHHHCCC
Q ss_conf             42663789
Q gi|254780975|r  197 GSSFFNQK  204 (224)
Q Consensus       197 Gsaif~~~  204 (224)
                      ...+|++-
T Consensus       201 pp~vl~kl  208 (238)
T PRK12376        201 TADILKKL  208 (238)
T ss_pred             CHHHHHHH
T ss_conf             99999986


No 445
>pfam04263 TPK_catalytic Thiamin pyrophosphokinase, catalytic domain. Family of thiamin pyrophosphokinase (EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyses the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=55.77  E-value=9  Score=18.85  Aligned_cols=112  Identities=20%  Similarity=0.183  Sum_probs=52.0

Q ss_pred             HHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH
Q ss_conf             89999864125641685678851203367640477607999706642158999867764982599852333447899886
Q gi|254780975|r   51 ADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVI  130 (224)
Q Consensus        51 ~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l  130 (224)
                      |++++.+-+..    +..+.+.--.+++.+.-..-+|.++=-..+..  .+..++.++.+.+.  ...|+.....++.-+
T Consensus         5 P~~~~~l~~~a----~~iIa~DgGa~~l~~~~~i~Pd~iiGDfDSi~--~~~~~~~~~~~~~~--~~~~dkD~TD~ekAl   76 (122)
T pfam04263         5 PDFVRDLWKNA----DLRVAADGGANHLRDFLSLKPDFVVGDFDSIT--EELRAYYKEAGVNL--IHFPEKDDTDLELAL   76 (122)
T ss_pred             HHHHHHHHHHC----CEEEEECCHHHHHHHHCCCCCCEEECCCCCCC--HHHHHHHHHCCCEE--EECCCCCCCHHHHHH
T ss_conf             07899999868----99999724999999928989898971778998--58999998569728--878566756899999


Q ss_pred             H-----HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEEC
Q ss_conf             2-----0140289983067765332201357789986543138652-69815
Q gi|254780975|r  131 D-----EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS-LEVDG  176 (224)
Q Consensus       131 ~-----~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~-I~vDG  176 (224)
                      .     ..+.|.++    |..|..+. ..+..+.-+-++.. .+.. +-+||
T Consensus        77 ~~~~~~~~~~i~i~----G~~GgR~D-H~lanl~~L~k~~~-~~~~i~l~d~  122 (122)
T pfam04263        77 DEALELGADEIVIL----GALGGRLD-HALANLNLLLRLAY-TDNTIFLLDG  122 (122)
T ss_pred             HHHHHCCCCEEEEE----CCCCCCHH-HHHHHHHHHHHHHH-CCCEEEEECC
T ss_conf             99997799989998----88899776-99999999999984-6984998149


No 446
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=55.77  E-value=16  Score=17.19  Aligned_cols=52  Identities=15%  Similarity=0.296  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHCCC---CEEEEECCCCHHHHHHHHHCCC--CEEEECHHHHCCCC
Q ss_conf             3577899865431386---5269815899889999996799--89997426637899
Q gi|254780975|r  154 TIPKIRQAKALIGKRS---ISLEVDGGVTSRNIKSLVQAGA--DLLVVGSSFFNQKG  205 (224)
Q Consensus       154 ~l~kI~~l~~~~~~~~---~~I~vDGGvn~~~i~~l~~~Ga--d~~V~Gsaif~~~d  205 (224)
                      ...-++++|+.+++.+   .+|.+-||+|.+.+..+.+.|+  |.+=+|+.+-+..+
T Consensus       260 ~~~~~~~~r~~ld~~G~~~~kIv~SdgLd~~~i~~l~~~g~~id~FGIGT~L~t~~~  316 (327)
T cd01570         260 LAYLSKEARKMLDEAGLTKVKIVASNDLDEYTIAALNAQGAPIDAFGVGTRLVTSQS  316 (327)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf             799999999999877999978999799999999999977997349967876123999


No 447
>KOG4202 consensus
Probab=54.40  E-value=17  Score=17.05  Aligned_cols=124  Identities=17%  Similarity=0.194  Sum_probs=73.5

Q ss_pred             CEEEEEEEEEECCHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHHCCEEEEE
Q ss_conf             41685678851203367640-4776079997066421589998677649825998523334--47899886201402899
Q gi|254780975|r   63 SVFDCHLMISSIDSHINIIA-DAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETP--VAILEDVIDEIDMILIM  139 (224)
Q Consensus        63 ~~~dvHLMv~~P~~~i~~~~-~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~--~~~i~~~l~~~D~vliM  139 (224)
                      .+.=|-..+++|+++|-..+ ..+.|++-.|-...      .+++...+ ++-+.+-|-..  ........+..|++++=
T Consensus        92 ~~~lVGVF~nqp~e~il~~~~~~~ldiVQLHG~es------~~~~~~L~-rpvikvfpln~n~~~~~~~~vP~~d~~lvd  164 (227)
T KOG4202          92 AKKLVGVFVNQPEETILRAADSSDLDIVQLHGNES------RAAFSRLV-RPVIKVFPLNANEDGKLLNEVPEEDWILVD  164 (227)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCC------HHHHHHHC-CCEEEEEECCCHHHHHHHCCCCCHHHEEEC
T ss_conf             40068875259889999987644975598628653------89999747-844899724713767764028700202464


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH-CCCCEEEECHHH
Q ss_conf             8306776533220135778998654313865269815899889999996-799899974266
Q gi|254780975|r  140 TVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQ-AGADLLVVGSSF  200 (224)
Q Consensus       140 ~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~-~Gad~~V~Gsai  200 (224)
                      + +.|-+|..|.=..++-+-    -+.+.+  -...||++.+|...... .+++.+=+.|.+
T Consensus       165 s-etGG~G~~~dW~~~s~~~----vr~~~~--~~LAGGltP~NV~dAlsi~~p~gvDVSsGv  219 (227)
T KOG4202         165 S-ETGGSGKGFDWAQFSLPS----VRSRNG--WLLAGGLTPTNVSDALSILQPDGVDVSSGV  219 (227)
T ss_pred             C-CCCCCCCCCCHHHHCCCC----CCCCCC--EEEECCCCCCCHHHHHHHCCCCEEECCCCE
T ss_conf             5-567676663787823764----335676--487458885436776643387437424750


No 448
>TIGR00875 talC transaldolase, putative; InterPro: IPR004731   Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated  in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.   Transaldolase is evolutionary related  to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0005975 carbohydrate metabolic process.
Probab=54.37  E-value=17  Score=17.05  Aligned_cols=176  Identities=15%  Similarity=0.247  Sum_probs=122.9

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCC----C----HHHHHHHHHCC--CCEEEEEEEEEECCHHHH---HH
Q ss_conf             88999999999996599899997342634584341----7----89999864125--641685678851203367---64
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISF----G----ADVIRSLRSYS--DSVFDCHLMISSIDSHIN---II   81 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~----~----~~~i~~i~~~t--~~~~dvHLMv~~P~~~i~---~~   81 (224)
                      |-.|. +|++++.+.|       +.||.=. |-|+    +    .+.+++|.+.-  +=++-...|+.+-+..++   .+
T Consensus         6 DTANv-~Ei~~~~e~g-------~~~GVTT-NPsliak~~n~~f~evl~ei~~~vGd~G~vsae~~S~dAegMv~Eak~L   76 (216)
T TIGR00875         6 DTANV-EEIKKAAELG-------ILAGVTT-NPSLIAKEGNRSFWEVLKEIQEVVGDEGPVSAEVISLDAEGMVEEAKEL   76 (216)
T ss_pred             CCCCH-HHHHHHHHCC-------CCCCCCC-CHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHH
T ss_conf             41257-9999998424-------5477345-6334201368878899999998745888553434304178899999999


Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEE--EEECCCCH-------HHHHHHHHHCCEEEEEEEECCCCCCCCCC
Q ss_conf             0477607999706642158999867764982599--85233344-------78998862014028998306776533220
Q gi|254780975|r   82 ADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGV--AINPETPV-------AILEDVIDEIDMILIMTVNPGFGGQQLIE  152 (224)
Q Consensus        82 ~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Gi--ai~p~T~~-------~~i~~~l~~~D~vliM~V~PG~~Gq~f~~  152 (224)
                      .+. ++-|++-.-.|.+=...++.+++.|+++-.  .++|.+-+       +-+.||+.-+|-+       |..      
T Consensus        77 a~~-~~nivvKIP~T~~GLkAv~~L~~eGI~TnvTlvfsa~QaLlAA~AGA~YVsPfvgRlDdi-------gg~------  142 (216)
T TIGR00875        77 AKL-APNIVVKIPMTSEGLKAVKILKKEGIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDI-------GGD------  142 (216)
T ss_pred             HHH-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEHHEECHHHHHHHHHCCCCEECCHHHHHHHC-------CCC------
T ss_conf             975-289789614785379999999857983120102354589999981891424401101312-------775------


Q ss_pred             HHHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHHCCCCEEEECHH----HHCCCCHHHHHHHHH
Q ss_conf             1357789986543138652--6981589988999999679989997426----637899899999999
Q gi|254780975|r  153 STIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSLVQAGADLLVVGSS----FFNQKGEISYAKRLN  214 (224)
Q Consensus       153 ~~l~kI~~l~~~~~~~~~~--I~vDGGvn~~~i~~l~~~Gad~~V~Gsa----if~~~d~~~~~~~l~  214 (224)
                       -++.|.++++++..+.++  |-+--==...++-++...|+|..-+--.    +|+.|--....+++.
T Consensus       143 -G~~li~e~~~i~~~h~~~t~vi~AS~rhP~hvle~al~Ga~~~t~p~~V~~~l~~~P~~~~~lE~F~  209 (216)
T TIGR00875       143 -GLKLIEEVKTIFENHALDTEVIAASVRHPRHVLEAALIGADIATLPLDVMQQLLNHPLTDIGLERFL  209 (216)
T ss_pred             -HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCEEECCHHHHHHHHHCCHHHHHHHHHH
T ss_conf             -0578999999997308764266540237178999997065544057899999850753578888777


No 449
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=54.33  E-value=17  Score=17.05  Aligned_cols=83  Identities=25%  Similarity=0.282  Sum_probs=45.1

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHH-HHHHC--CEEEEEEEEC-CCCCCCCCCHHHHHHH
Q ss_conf             776079997066421589998677649825998523334478998-86201--4028998306-7765332201357789
Q gi|254780975|r   84 AGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILED-VIDEI--DMILIMTVNP-GFGGQQLIESTIPKIR  159 (224)
Q Consensus        84 ~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~-~l~~~--D~vliM~V~P-G~~Gq~f~~~~l~kI~  159 (224)
                      .|+|.|.||.+.-  -..++..++....-.|.       .+.-.+ +=...  ....=++++| -|..+...+.+..+++
T Consensus       202 l~~dligFqt~~y--~~nF~~~~~r~~~~~~~-------~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~  272 (486)
T COG0380         202 LGADLIGFQTESY--ARNFLDLCSRLLGVTGD-------ADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVL  272 (486)
T ss_pred             HCCCEEEECCHHH--HHHHHHHHHHHCCCCCC-------CCCCCCCCCCCEEEEEEEEEECCHHHHHHHHCCCCHHHHHH
T ss_conf             3278668537789--99999999986365544-------43202466786578989940148899987616873156799


Q ss_pred             HHHHHHHC-CCCEEEEE
Q ss_conf             98654313-86526981
Q gi|254780975|r  160 QAKALIGK-RSISLEVD  175 (224)
Q Consensus       160 ~l~~~~~~-~~~~I~vD  175 (224)
                      ++++.+.+ +.+-+.+|
T Consensus       273 el~~~~~~~~kiivgvD  289 (486)
T COG0380         273 ELKAELGRNKKLIVGVD  289 (486)
T ss_pred             HHHHHHCCCCEEEEEEH
T ss_conf             99998468866999740


No 450
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=53.81  E-value=18  Score=16.99  Aligned_cols=27  Identities=30%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEE---CCEEC
Q ss_conf             9999999999659989999734---26345
Q gi|254780975|r   18 RLGEEISNITKAGAKQIHFDVM---DGCFV   44 (224)
Q Consensus        18 ~l~~~i~~l~~~~~d~iHiDIm---Dg~fv   44 (224)
                      |=-...+...+.|+|++-+||.   ||+.|
T Consensus        23 NTl~Af~~A~~~G~d~iE~DV~lTkDg~~V   52 (249)
T PRK09454         23 NTLAAIDVGARYGHKMIEFDAKLSADGVIF   52 (249)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEEECCCCCEE
T ss_conf             049999999984999999985696899999


No 451
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=53.75  E-value=18  Score=16.99  Aligned_cols=115  Identities=15%  Similarity=0.241  Sum_probs=61.8

Q ss_pred             HCCCCCCEEEEECCCC---------CC---HHHHHHHHHHCCCEEEEE--EECCCCHHHHHHHHHH-CCEEEEEEEECCC
Q ss_conf             4047760799970664---------21---589998677649825998--5233344789988620-1402899830677
Q gi|254780975|r   81 IADAGCDIITFHPESS---------PH---IRRSLRTIHAMGKKTGVA--INPETPVAILEDVIDE-IDMILIMTVNPGF  145 (224)
Q Consensus        81 ~~~~g~d~i~~H~E~~---------~~---~~~~i~~i~~~g~k~Gia--i~p~T~~~~i~~~l~~-~D~vliM~V~PG~  145 (224)
                      +...++|-+.+|....         .+   ..+.|+++++.-.-+-|+  ...+-+.+....+.+. +++|-+    -|.
T Consensus       144 v~~i~AdAl~iHlN~~QEl~qpEGDr~f~~~l~~I~~i~~~~~vPVIvKeVG~Gis~e~a~~l~~~Gv~~IdV----sg~  219 (351)
T PRK05437        144 VEMIEADALQIHLNPLQELVQPEGDRDFRGWLDRIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDV----AGA  219 (351)
T ss_pred             HHHHCCCCEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE----CCC
T ss_conf             9971678157524624540288889778899999999998679988985215788999999999679999995----799


Q ss_pred             CCCCCC--------------------CHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHH
Q ss_conf             653322--------------------01357789986543138652698158998-899999967998999742663
Q gi|254780975|r  146 GGQQLI--------------------ESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       146 ~Gq~f~--------------------~~~l~kI~~l~~~~~~~~~~I~vDGGvn~-~~i~~l~~~Gad~~V~Gsaif  201 (224)
                      +|-.|.                    -.+.+-+.++++..+  ++.|.+||||+. -.+.+....||+.+=+|..+.
T Consensus       220 GGTnf~~IE~~R~~~~~~~~~~~~wGipT~~sL~e~~~~~~--~~~iiasGGIR~glDi~KaLaLGA~~vgia~p~L  294 (351)
T PRK05437        220 GGTSWAAVENYRAKQRRLASYFADWGIPTAQSLLEARSALP--DLPIIASGGIRTGLDIAKALALGADAVGLAGPFL  294 (351)
T ss_pred             CCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             88557999988710212457777348668999999997479--9829962787878999999995510777589999


No 452
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases; InterPro: IPR010031   This entry identifies a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesising ascorbic acid or a derivative. These include L-gulonolactone oxidase (1.1.3.8 from EC) from rat and D-arabinono-1,4-lactone oxidase (1.1.3.37 from EC) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by IPR006093 from INTERPRO.; GO: 0016899 oxidoreductase activity acting on the CH-OH group of donors oxygen as acceptor, 0009058 biosynthetic process.
Probab=53.68  E-value=15  Score=17.40  Aligned_cols=103  Identities=15%  Similarity=0.319  Sum_probs=71.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHH---HHHH---HHCCEEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             799970664215899986776498259985233344789---9886---2014028998306776533220135778998
Q gi|254780975|r   88 IITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAIL---EDVI---DEIDMILIMTVNPGFGGQQLIESTIPKIRQA  161 (224)
Q Consensus        88 ~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i---~~~l---~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l  161 (224)
                      ...++..+.+++.+++..+|++++++-++ ..+-+.+.+   ..|+   +..|.|+-.--+|-..-...--++==+.-++
T Consensus        16 e~y~qP~s~eevrE~l~~Ar~~~Kk~~vV-G~GHSPSdi~cTdg~l~~ldkmnkV~~fd~~Pelh~~~iTV~AGirlyql   94 (505)
T TIGR01678        16 EVYYQPKSVEEVREVLADAREAEKKVKVV-GAGHSPSDIVCTDGFLVSLDKMNKVLKFDKEPELHKKDITVEAGIRLYQL   94 (505)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCEEEEE-CCCCCCCCCEECCCHHEECCCCCCEEEECCCCCCCCCCEEHHHHHHHHHH
T ss_conf             55448972999999999987469838997-57778232154260210012245101552786632201116552568664


Q ss_pred             HHHHHCCCCEEEEECCCCHHHHHHHHHCCC
Q ss_conf             654313865269815899889999996799
Q gi|254780975|r  162 KALIGKRSISLEVDGGVTSRNIKSLVQAGA  191 (224)
Q Consensus       162 ~~~~~~~~~~I~vDGGvn~~~i~~l~~~Ga  191 (224)
                      .+.+.++++.++.=|+|++.++.-+...|.
T Consensus        95 ~e~L~~~Gys~~~lGsiSe~sVaGiistgt  124 (505)
T TIGR01678        95 QEILDEKGYSLSNLGSISEVSVAGIISTGT  124 (505)
T ss_pred             HHHHHHCCCCEECCCCCCCCEECCEEECCC
T ss_conf             589752487100022100431211550374


No 453
>pfam00724 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family.
Probab=53.38  E-value=18  Score=16.95  Aligned_cols=127  Identities=16%  Similarity=0.261  Sum_probs=72.0

Q ss_pred             HCCCCCCEEEEECCCC--------------------------CCHHHHHHHHHHC-C--CEEEEEEECCCC-------HH
Q ss_conf             4047760799970664--------------------------2158999867764-9--825998523334-------47
Q gi|254780975|r   81 IADAGCDIITFHPESS--------------------------PHIRRSLRTIHAM-G--KKTGVAINPETP-------VA  124 (224)
Q Consensus        81 ~~~~g~d~i~~H~E~~--------------------------~~~~~~i~~i~~~-g--~k~Giai~p~T~-------~~  124 (224)
                      ..++|.|-|-+|.-+.                          .-+.+++..||+. |  .-+|+=|++...       .+
T Consensus       152 A~~AGfDGVEIh~ahGyLl~QFLSp~~N~RtDeYGGslENR~Rf~~eIi~aIR~~vg~d~~i~vRis~~d~~~~g~~~~e  231 (336)
T pfam00724       152 AVEAGFDGVEIHGAHGYLLDQFLSPGSNKRTDEYGGSIENRARFPLEVVDAVKEAVGEDRPIGYRLSPDDVFEGGLTGAE  231 (336)
T ss_pred             HHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHH
T ss_conf             99829998996142678999862876588977678898897548999999999972877664267465224689988426


Q ss_pred             HH---HHHHHH--CCEEEEEEE------ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCC-C
Q ss_conf             89---988620--140289983------06776533220135778998654313865269815899-88999999679-9
Q gi|254780975|r  125 IL---EDVIDE--IDMILIMTV------NPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAG-A  191 (224)
Q Consensus       125 ~i---~~~l~~--~D~vliM~V------~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~G-a  191 (224)
                      .+   .+++..  +|++.+-..      .|...+ ++.....-.....+......++.+.+-||++ .+.+.++++.| +
T Consensus       232 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~pvi~~G~i~~~~~ae~~l~~g~~  310 (336)
T pfam00724       232 TLAQFAYAAGELGVRVLDGTRLAYIHAIEPRVTG-PFPVETGQQVENNEFIKKVWKGPVITVGRINDPEFAAEIVEEGRA  310 (336)
T ss_pred             HHHHHHHHHHHHCCCEEECCCCCEEECCCCCCCC-CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf             8999999999838775642766223202443357-877563124789999998769859996999989999999987994


Q ss_pred             CEEEECHHHHCCCCHHH
Q ss_conf             89997426637899899
Q gi|254780975|r  192 DLLVVGSSFFNQKGEIS  208 (224)
Q Consensus       192 d~~V~Gsaif~~~d~~~  208 (224)
                      |.+-.|.++..+||...
T Consensus       311 D~V~~gR~~iadPd~~~  327 (336)
T pfam00724       311 DLVAMGRPFLADPDLVK  327 (336)
T ss_pred             EEHHHHHHHHHCHHHHH
T ss_conf             43686699997913999


No 454
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=53.31  E-value=18  Score=16.94  Aligned_cols=109  Identities=11%  Similarity=0.035  Sum_probs=52.1

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECC-----HHHHHHCC
Q ss_conf             7063258899999999999659989999734263458434178999986412564168567885120-----33676404
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSID-----SHINIIAD   83 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~-----~~i~~~~~   83 (224)
                      |-=-.....+|.+.+++|...+-+|+-+----|--...-  ..++++.|++.+.++.=.||-+-+-.     ..++.+..
T Consensus        31 PPk~~~~~~~l~~~i~~L~~l~P~FvSVTyGAggstr~~--T~~i~~~i~~~~~i~~~~HLTCvg~t~~~i~~~L~~~~~  108 (296)
T PRK09432         31 PPRTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDR--THSIIKGIKKRTGLEAAPHLTCIDATPEELRTIAKDYWN  108 (296)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH--HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             988906899999999998516999899607989977356--999999999874998112666269999999999999997


Q ss_pred             CCCCEEEEEC----C----CCCCHHHHHHHHHHCC-CEEEEEEEC
Q ss_conf             7760799970----6----6421589998677649-825998523
Q gi|254780975|r   84 AGCDIITFHP----E----SSPHIRRSLRTIHAMG-KKTGVAINP  119 (224)
Q Consensus        84 ~g~d~i~~H~----E----~~~~~~~~i~~i~~~g-~k~Giai~p  119 (224)
                      .|++.|.---    +    ...+-.+.+.+||+.+ ..+|+|=-|
T Consensus       109 ~GI~nILALRGD~P~g~~~~~~yA~dLV~~Ir~~~~f~I~VAaYP  153 (296)
T PRK09432        109 NGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYP  153 (296)
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCC
T ss_conf             597548654898999999887468999999998369826874288


No 455
>pfam07287 DUF1446 Protein of unknown function (DUF1446). This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=52.51  E-value=18  Score=16.86  Aligned_cols=99  Identities=18%  Similarity=0.317  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHCCCEEEE---EEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHH------HHHCCC
Q ss_conf             58999867764982599---852333447899886201402899830677653322013577899865------431386
Q gi|254780975|r   99 IRRSLRTIHAMGKKTGV---AINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKA------LIGKRS  169 (224)
Q Consensus        99 ~~~~i~~i~~~g~k~Gi---ai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~------~~~~~~  169 (224)
                      +...+..++++|+|+-.   ++||.---+.+..++.....=+-..+--|   .    .++++++++.+      +.....
T Consensus        60 l~~~L~~~~~kgikii~NaGa~NP~~~a~~v~~~a~~~Gl~lkVA~V~G---D----Dv~~~~~~~~~g~~~~~l~~g~~  132 (362)
T pfam07287        60 LEPVLPLCAEKGIRIVTNAGALNPRGAAEAVRELARELGLDLKVAVVEG---D----DVLPRVDELLKGEDLTHLDTGEP  132 (362)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC---C----CCHHHHHHHHCCCCCCCCCCCCC
T ss_conf             9999999997293899528878979999999999997799953999978---7----53145677642788654557997


Q ss_pred             C------EEEEECCCCHHHHHHHHHCCCCEEEECH----HHHCCC
Q ss_conf             5------2698158998899999967998999742----663789
Q gi|254780975|r  170 I------SLEVDGGVTSRNIKSLVQAGADLLVVGS----SFFNQK  204 (224)
Q Consensus       170 ~------~I~vDGGvn~~~i~~l~~~Gad~~V~Gs----aif~~~  204 (224)
                      +      .+..-==+-..-|.+..+.|||+++.|.    ++|=.+
T Consensus       133 l~~~~~~~~sanAYLGa~~I~~AL~~GADIVItGRvaD~al~lgp  177 (362)
T pfam07287       133 LPELGDRLVSANAYLGAEGIVEALRAGADIVITGRVADASLVLGP  177 (362)
T ss_pred             CCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHH
T ss_conf             644566436777623858999999719988985551456887889


No 456
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine  kinases. The Serine Threonine  kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain  is predicted to be involved in ATP binding.
Probab=52.40  E-value=19  Score=16.85  Aligned_cols=42  Identities=17%  Similarity=0.321  Sum_probs=27.0

Q ss_pred             HHHHHHCCCCE---EEEEC-CCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             86543138652---69815-89988999999679989997426637
Q gi|254780975|r  161 AKALIGKRSIS---LEVDG-GVTSRNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       161 l~~~~~~~~~~---I~vDG-Gvn~~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                      ++++..+++++   +.++| .+...-...+.+.|+|.+|+||+-.+
T Consensus        70 ~~~~C~~~~V~~e~~v~e~~d~~~~I~e~v~~~~i~~LVmGs~~~~  115 (146)
T cd01989          70 YRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDN  115 (146)
T ss_pred             HHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             9999987597289999834888899999999759989998627998


No 457
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=52.30  E-value=19  Score=16.84  Aligned_cols=199  Identities=15%  Similarity=0.182  Sum_probs=85.9

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEE--ECCEECCCC---CCCHHHHHHHHHCCCCE--EEEEEEEEECCH---HHHHHCCC
Q ss_conf             889999999999965998999973--426345843---41789999864125641--685678851203---36764047
Q gi|254780975|r   15 DFSRLGEEISNITKAGAKQIHFDV--MDGCFVPNI---SFGADVIRSLRSYSDSV--FDCHLMISSIDS---HINIIADA   84 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~~d~iHiDI--mDg~fvpn~---~~~~~~i~~i~~~t~~~--~dvHLMv~~P~~---~i~~~~~~   84 (224)
                      +..++.+...++-.+|+|++-=|=  .|.-|.|--   .+..+.++.-...|...  .-+++ +.+++.   -.+...+.
T Consensus       158 s~~~~a~~~ye~~~GG~D~iKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni-T~~~~em~~ra~~a~e~  236 (412)
T TIGR03326       158 STEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLANI-TAPVREMERRAELVADL  236 (412)
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC-CCCHHHHHHHHHHHHHC
T ss_conf             97999999999982577731266456798876589999999999999998758742588643-78999999999999983


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEE------------ECCCCHH--HHHHHHHH--CCEEEEEEEECCCCCC
Q ss_conf             760799970664215899986776498259985------------2333447--89988620--1402899830677653
Q gi|254780975|r   85 GCDIITFHPESSPHIRRSLRTIHAMGKKTGVAI------------NPETPVA--ILEDVIDE--IDMILIMTVNPGFGGQ  148 (224)
Q Consensus        85 g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai------------~p~T~~~--~i~~~l~~--~D~vliM~V~PG~~Gq  148 (224)
                      |+.++-+-+-+..  -..++.+++.--..|+.|            +|..-++  .+-++.-.  +|.+.+=++  |++--
T Consensus       237 G~~~vMv~~~~~G--~sal~~lr~~~~d~~l~ihaHrA~~ga~~r~p~~Gis~~vl~Kl~RLaGaD~ih~~t~--~~Gk~  312 (412)
T TIGR03326       237 GGQYVMVDVVVCG--WSALQYIRELTEDLGLAIHAHRAMHAAFTRNPKHGISMFALAKLYRLIGVDQLHTGTA--GVGKL  312 (412)
T ss_pred             CCCEEEECCCCCC--CHHHHHHHHHHHHCCCEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCEEECCCC--CCCCC
T ss_conf             9987974363246--3599999986223497798436640444438767736999999999839882422787--77886


Q ss_pred             CCCCHHHHHHH-HHHHHHHC-CCCEEEEECCCCHHHHHHHH-HCCCCEEE-ECHHHHCCCCHHH-HHHHHHHHHH
Q ss_conf             32201357789-98654313-86526981589988999999-67998999-7426637899899-9999999999
Q gi|254780975|r  149 QLIESTIPKIR-QAKALIGK-RSISLEVDGGVTSRNIKSLV-QAGADLLV-VGSSFFNQKGEIS-YAKRLNDLKK  218 (224)
Q Consensus       149 ~f~~~~l~kI~-~l~~~~~~-~~~~I~vDGGvn~~~i~~l~-~~Gad~~V-~Gsaif~~~d~~~-~~~~l~~l~~  218 (224)
                      .+.++....+. .+++-... +..--..-||++..+++.+. ..|-|++. .|+.+++.|+... -++.++.-..
T Consensus       313 ~~~~~~~~~~~~~l~~~~~~~k~~~PV~SgGih~g~~p~~~~~~G~D~il~~GGGi~GHP~G~aaGa~A~RqA~e  387 (412)
T TIGR03326       313 EGGKEDTKQINDFLRQKWHHIKPVFPVSSGGLHPGLVPPLIDALGKDLVIQAGGGVHGHPDGPRAGAKALRAAID  387 (412)
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             789899999999861743478982577178776536779999739818996797664799864788999999999


No 458
>KOG0369 consensus
Probab=52.12  E-value=19  Score=16.82  Aligned_cols=145  Identities=21%  Similarity=0.218  Sum_probs=79.5

Q ss_pred             HHHHHHHHH-CCCCEEEEEE-------EEEECCHHHHHH----CCCCCCEEEEECCCCCCHHHHH---HHHHHCCCEEEE
Q ss_conf             899998641-2564168567-------885120336764----0477607999706642158999---867764982599
Q gi|254780975|r   51 ADVIRSLRS-YSDSVFDCHL-------MISSIDSHINII----ADAGCDIITFHPESSPHIRRSL---RTIHAMGKKTGV  115 (224)
Q Consensus        51 ~~~i~~i~~-~t~~~~dvHL-------Mv~~P~~~i~~~----~~~g~d~i~~H~E~~~~~~~~i---~~i~~~g~k~Gi  115 (224)
                      ++.++.+|+ ++++|+..-|       .+..|.+.+.+|    .+.|.|+.-+ ..+.+++.+.+   +...+.|--+--
T Consensus       621 WeRL~~lRkliPNIPFQmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRV-FDsLN~lpnl~lGmeAagkAGGVVEA  699 (1176)
T KOG0369         621 WERLRELRKLIPNIPFQMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRV-FDSLNYLPNLLLGMEAAGKAGGVVEA  699 (1176)
T ss_pred             HHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE-HHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             89999999767898589975135513326787168999999998548615661-01331024545556654115875899


Q ss_pred             E-------EECCCCHHHHHHHHHHCCEEEEEEEE-CC---CCCCCCCCHHHHHHHHHHHHHHCCCCEEEE-E-CCCCHHH
Q ss_conf             8-------52333447899886201402899830-67---765332201357789986543138652698-1-5899889
Q gi|254780975|r  116 A-------INPETPVAILEDVIDEIDMILIMTVN-PG---FGGQQLIESTIPKIRQAKALIGKRSISLEV-D-GGVTSRN  182 (224)
Q Consensus       116 a-------i~p~T~~~~i~~~l~~~D~vliM~V~-PG---~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~v-D-GGvn~~~  182 (224)
                      +       ++|...--.+.+|++.+|.+.-|+.. -|   -.|----+.+--.|..+|..++.-.+.+.. | -|---.-
T Consensus       700 ai~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHtHDtsGagVAs  779 (1176)
T KOG0369         700 AICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHTHDTSGAGVAS  779 (1176)
T ss_pred             EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHH
T ss_conf             88502555786544114799998999998626718865444233676888999998874089985377416776387999


Q ss_pred             HHHHHHCCCCEEEE
Q ss_conf             99999679989997
Q gi|254780975|r  183 IKSLVQAGADLLVV  196 (224)
Q Consensus       183 i~~l~~~Gad~~V~  196 (224)
                      ...|..+|||++=+
T Consensus       780 Mlaca~AGADVVDv  793 (1176)
T KOG0369         780 MLACALAGADVVDV  793 (1176)
T ss_pred             HHHHHHCCCCEEEE
T ss_conf             99998739960443


No 459
>PRK06851 hypothetical protein; Provisional
Probab=51.76  E-value=19  Score=16.79  Aligned_cols=65  Identities=18%  Similarity=0.301  Sum_probs=42.9

Q ss_pred             EEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHH
Q ss_conf             259985233344789988620140289983067765332201357789986543138652698-158998899
Q gi|254780975|r  112 KTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEV-DGGVTSRNI  183 (224)
Q Consensus       112 k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~v-DGGvn~~~i  183 (224)
                      ++.=|+.|.=+++.+..++..++.+-++.-.||.+-    ...+.+|.+...   ++++.++| -=|.+.+.+
T Consensus       193 lF~~A~TP~G~v~~i~~l~~~~~~~y~ikG~pGtGK----stlL~~i~~~A~---~~G~dvevyhc~fdPd~i  258 (368)
T PRK06851        193 LFLGAITPKGAVDHVPSLTEGVKNRYFLKGRPGTGK----STMLKKVAKAAE---ERGLDVEVYHCPFDPNSL  258 (368)
T ss_pred             EECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH----HHHHHHHHHHHH---HCCCEEEEEECCCCCCCC
T ss_conf             322357999645147878606786999818999877----999999999999---859828998079898861


No 460
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=51.10  E-value=19  Score=16.72  Aligned_cols=26  Identities=35%  Similarity=0.544  Sum_probs=21.0

Q ss_pred             EEEEECCCCH-HHHHHHHHCCCCEEEE
Q ss_conf             2698158998-8999999679989997
Q gi|254780975|r  171 SLEVDGGVTS-RNIKSLVQAGADLLVV  196 (224)
Q Consensus       171 ~I~vDGGvn~-~~i~~l~~~Gad~~V~  196 (224)
                      +..||||+.. --+..+.+.|+|.+|+
T Consensus       146 ~~yvDGG~~~n~Pv~~a~~~Gad~ii~  172 (175)
T cd07228         146 RLLVDGGVVNPIPVSVARALGADIVIA  172 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHCCCCEEEE
T ss_conf             899878867761099999779598999


No 461
>PRK12928 lipoyl synthase; Provisional
Probab=51.09  E-value=19  Score=16.72  Aligned_cols=130  Identities=18%  Similarity=0.234  Sum_probs=78.5

Q ss_pred             EEECCHHHHHHCCCCCCEEEEECCCCCC--------HHHHHHHHHHCCCEEEE-EEECCCC--HH-HHHHHHHH-CCEE-
Q ss_conf             8512033676404776079997066421--------58999867764982599-8523334--47-89988620-1402-
Q gi|254780975|r   71 ISSIDSHINIIADAGCDIITFHPESSPH--------IRRSLRTIHAMGKKTGV-AINPETP--VA-ILEDVIDE-IDMI-  136 (224)
Q Consensus        71 v~~P~~~i~~~~~~g~d~i~~H~E~~~~--------~~~~i~~i~~~g~k~Gi-ai~p~T~--~~-~i~~~l~~-~D~v-  136 (224)
                      -.+|.+..+.....|-+++.+-.-.-+|        ..++++.||+..-.+.+ +|-|+-.  .+ .+..+++. .|.+ 
T Consensus        89 ~~EP~rvA~av~~m~LkyvVITSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~iEvLiPDF~G~~~~al~~v~~a~pdV~n  168 (290)
T PRK12928         89 PDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGVARALATVLAAKPDCFN  168 (290)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHCCCHHHH
T ss_conf             03479999999983897689841236788664529999999999845998679970711136878999999846854654


Q ss_pred             -EEE-------EEECCCCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCH----HHHHHHHHCCCCEEEECHHHHC
Q ss_conf             -899-------83067765332201357789986543138--652698158998----8999999679989997426637
Q gi|254780975|r  137 -LIM-------TVNPGFGGQQLIESTIPKIRQAKALIGKR--SISLEVDGGVTS----RNIKSLVQAGADLLVVGSSFFN  202 (224)
Q Consensus       137 -liM-------~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~--~~~I~vDGGvn~----~~i~~l~~~Gad~~V~Gsaif~  202 (224)
                       .+=       .|.||..    -..+|+-++.++++.+.-  +-.|++-=|=+.    +++..|.++|+|++..|-++=-
T Consensus       169 HNiETV~rL~~~VRp~A~----Y~rSL~vL~~ak~~~~~i~TKSgiMvGLGEt~eEv~~~~~DLr~~gvdilTiGQYL~P  244 (290)
T PRK12928        169 HNLETVPRLQKAVRRGAD----YQRSLDLLARAKELAPGIPTKSGLMLGLGETEDEVIETLRDLRAVDCDRLTIGQYLRP  244 (290)
T ss_pred             CCCCCCHHHCCCCCCCCH----HHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             550120431712488550----8999999999997388852413458860588999999999999819989982402588


Q ss_pred             CC
Q ss_conf             89
Q gi|254780975|r  203 QK  204 (224)
Q Consensus       203 ~~  204 (224)
                      ++
T Consensus       245 s~  246 (290)
T PRK12928        245 SL  246 (290)
T ss_pred             CC
T ss_conf             86


No 462
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=51.08  E-value=12  Score=17.98  Aligned_cols=137  Identities=21%  Similarity=0.355  Sum_probs=71.6

Q ss_pred             HHHCCCHHHHHHHHHHHHHCC-CCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHCCCCCC-
Q ss_conf             063258899999999999659-989999734263458434178999986412564168567885120336764047760-
Q gi|254780975|r   10 SILAADFSRLGEEISNITKAG-AKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSHINIIADAGCD-   87 (224)
Q Consensus        10 Sil~~d~~~l~~~i~~l~~~~-~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~d-   87 (224)
                      .+|-.+.++++.-++.+.+.| .-|+|+|..+|-=  |--++.+++++.                        .  ++| 
T Consensus        28 flL~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~--~~e~~i~fi~~~------------------------~--~pdG   79 (181)
T COG1954          28 FLLTGHILNIKEIVKKLKNRGKTVFIHVDLVEGLS--NDEVAIEFIKEV------------------------I--KPDG   79 (181)
T ss_pred             EEEECHHHHHHHHHHHHHHCCCEEEEEEHHHCCCC--CCHHHHHHHHHH------------------------C--CCCE
T ss_conf             99824063099999999947967999857844667--853899999985------------------------0--6771


Q ss_pred             EEEEECCCCCCHHHHHHHHHHCCCEEEEE--EECCCCHHHHHHHHH--HCCEEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf             79997066421589998677649825998--523334478998862--01402899830677653322013577899865
Q gi|254780975|r   88 IITFHPESSPHIRRSLRTIHAMGKKTGVA--INPETPVAILEDVID--EIDMILIMTVNPGFGGQQLIESTIPKIRQAKA  163 (224)
Q Consensus        88 ~i~~H~E~~~~~~~~i~~i~~~g~k~Gia--i~p~T~~~~i~~~l~--~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~  163 (224)
                      +|+.+       .+.+...+++|..+---  +--...++.-...+.  ..|.|=+|   ||.     .|..+.+|.    
T Consensus        80 IISTk-------~~~i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvL---PGv-----~Pkvi~~i~----  140 (181)
T COG1954          80 IISTK-------SNVIKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVL---PGV-----MPKVIKEIT----  140 (181)
T ss_pred             EEECC-------HHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHCCCCEEEEC---CCC-----CHHHHHHHH----
T ss_conf             68734-------88999999749732642200107889989999987099879886---754-----399999998----


Q ss_pred             HHHCCCCEEEEECCC-C-HHHHHHHHHCCCCEEEE
Q ss_conf             431386526981589-9-88999999679989997
Q gi|254780975|r  164 LIGKRSISLEVDGGV-T-SRNIKSLVQAGADLLVV  196 (224)
Q Consensus       164 ~~~~~~~~I~vDGGv-n-~~~i~~l~~~Gad~~V~  196 (224)
                        .+.+++| +-||. + .|-.....++||-.+-.
T Consensus       141 --~~t~~pi-IAGGLi~t~Eev~~Al~aGA~avST  172 (181)
T COG1954         141 --EKTHIPI-IAGGLIETEEEVREALKAGAVAVST  172 (181)
T ss_pred             --HHCCCCE-EECCCCCCHHHHHHHHHHCCEEEEE
T ss_conf             --7558977-7324305399999999717679851


No 463
>KOG3974 consensus
Probab=50.60  E-value=20  Score=16.67  Aligned_cols=83  Identities=17%  Similarity=0.369  Sum_probs=48.5

Q ss_pred             HCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHH
Q ss_conf             40477607999706642158999867764982599852333----44789988620140289983067765332201357
Q gi|254780975|r   81 IADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPET----PVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIP  156 (224)
Q Consensus        81 ~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T----~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~  156 (224)
                      -...|+|...+-+|...     ..-||.+  .+-+-.+|.-    +++.++++++.+   ...-|-||-+-   .|.++.
T Consensus        53 a~~~GaDL~HiFCe~~A-----a~vIKsY--sPdLIVHP~l~~~~av~~i~k~L~Rl---havVIGPGLGR---dp~~~k  119 (306)
T KOG3974          53 ALRVGADLSHIFCEPEA-----AVVIKSY--SPDLIVHPVLDQENAVDIIEKLLQRL---HAVVIGPGLGR---DPAILK  119 (306)
T ss_pred             HHHHCCCEEEEEECHHH-----HHHHHHC--CCCEEECCCCCCCCHHHHHHHHHHHE---EEEEECCCCCC---CHHHHH
T ss_conf             98856651235545207-----7787642--97506413425776376789877435---38997798889---878999


Q ss_pred             HHHHHHHHHHCCCCEEEEEC
Q ss_conf             78998654313865269815
Q gi|254780975|r  157 KIRQAKALIGKRSISLEVDG  176 (224)
Q Consensus       157 kI~~l~~~~~~~~~~I~vDG  176 (224)
                      -+.++-++..++++.+-+||
T Consensus       120 ~i~~iley~~~~dvP~VIDa  139 (306)
T KOG3974         120 EIAKILEYLRGKDVPLVIDA  139 (306)
T ss_pred             HHHHHHHHHHCCCCCEEECC
T ss_conf             99999999864898679807


No 464
>TIGR02146 LysS_fung_arch homocitrate synthase; InterPro: IPR011872    This entry includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus . This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs .; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=50.49  E-value=20  Score=16.66  Aligned_cols=161  Identities=15%  Similarity=0.211  Sum_probs=103.9

Q ss_pred             HHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCE----EEEEEEEEE--CCHHHHHHCCCCCCEEEEECCC-
Q ss_conf             999996599899997342634584341789999864125641----685678851--2033676404776079997066-
Q gi|254780975|r   23 ISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSV----FDCHLMISS--IDSHINIIADAGCDIITFHPES-   95 (224)
Q Consensus        23 i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~----~dvHLMv~~--P~~~i~~~~~~g~d~i~~H~E~-   95 (224)
                      -+.|++-|++||-+        -.-.-+++.-+.++.+..+.    +..-+.+=-  -.+-++-.++.++|+|-+-+-. 
T Consensus        26 AkALdd~GV~~IE~--------g~P~vS~d~~~~ik~i~~L~~~G~l~a~iv~Hsra~~~D~~~a~~~~Vd~i~~~~G~S   97 (355)
T TIGR02146        26 AKALDDIGVDYIEV--------GHPAVSPDIRKDIKLIASLGKEGLLKAKIVTHSRAVLDDIEVAVETEVDRIDVFFGVS   97 (355)
T ss_pred             HHHHHHHCCEEEEC--------CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECH
T ss_conf             87632318105724--------8875547789999999833888760035567789999998776422786578743005


Q ss_pred             ---------------CCCHHHHHHHHHHCCCEEEEEEEC-CCCHHHHHHHHHH--------CCEEEEEEEECCCCCCCCC
Q ss_conf             ---------------421589998677649825998523-3344789988620--------1402899830677653322
Q gi|254780975|r   96 ---------------SPHIRRSLRTIHAMGKKTGVAINP-ETPVAILEDVIDE--------IDMILIMTVNPGFGGQQLI  151 (224)
Q Consensus        96 ---------------~~~~~~~i~~i~~~g~k~Giai~p-~T~~~~i~~~l~~--------~D~vliM~V~PG~~Gq~f~  151 (224)
                                     .+.+.++|+++|++|-.+-+=+.| +|.-+++.+++.-        +|+|=+= -+-|..   .=
T Consensus        98 ~~~l~~~h~~~~~~al~~i~e~I~y~K~~Gphv~VRFtaED~~R~d~~~L~~v~k~a~~~~vDRVsiA-DTvG~~---~P  173 (355)
T TIGR02146        98 KLLLKYKHRKDLEEALEIIAEVIEYAKSHGPHVKVRFTAEDTFRSDLDDLLKVYKTAKEAGVDRVSIA-DTVGVA---TP  173 (355)
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE-CCCCCC---CC
T ss_conf             88851025778899999999999999724882478864788851218999999999976188856751-343678---80


Q ss_pred             CHHHHHHHHHHHHH-HCCCCE--EEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf             01357789986543-138652--698158998899999967998999
Q gi|254780975|r  152 ESTIPKIRQAKALI-GKRSIS--LEVDGGVTSRNIKSLVQAGADLLV  195 (224)
Q Consensus       152 ~~~l~kI~~l~~~~-~~~~~~--I~vDGGvn~~~i~~l~~~Gad~~V  195 (224)
                      .++++-+++++... +.-+++  ..=|=|+=--|+-..++.||+++=
T Consensus       174 ~~~y~L~~~v~~~VGpg~~~~~H~HND~G~A~ANA~~AiEGGA~~vd  220 (355)
T TIGR02146       174 RRVYELVRKVKRVVGPGVDIEIHAHNDLGLAIANALAAIEGGATVVD  220 (355)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEE
T ss_conf             68999999998640887643563017577999999987530880898


No 465
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=50.37  E-value=20  Score=16.65  Aligned_cols=124  Identities=20%  Similarity=0.404  Sum_probs=72.8

Q ss_pred             CCCCCCEEEEECCCC----------------------C----CHHHHHHHHHHC-CC--EEEEEEECCCC-------HHH
Q ss_conf             047760799970664----------------------2----158999867764-98--25998523334-------478
Q gi|254780975|r   82 ADAGCDIITFHPESS----------------------P----HIRRSLRTIHAM-GK--KTGVAINPETP-------VAI  125 (224)
Q Consensus        82 ~~~g~d~i~~H~E~~----------------------~----~~~~~i~~i~~~-g~--k~Giai~p~T~-------~~~  125 (224)
                      .++|.|-|-+|.-+.                      +    -+.++++.+|+. |.  -+|+=|+|...       ++.
T Consensus       159 ~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e  238 (363)
T COG1902         159 KEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEE  238 (363)
T ss_pred             HHCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHH
T ss_conf             98399989984044449998558755777776688589998899999999999729886699997745467788888999


Q ss_pred             ---HHHHHHH---CCEEEEEEEECCC--CC-CCCC-C-HHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCC-CC
Q ss_conf             ---9988620---1402899830677--65-3322-0-13577899865431386526981589-988999999679-98
Q gi|254780975|r  126 ---LEDVIDE---IDMILIMTVNPGF--GG-QQLI-E-STIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAG-AD  192 (224)
Q Consensus       126 ---i~~~l~~---~D~vliM~V~PG~--~G-q~f~-~-~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~G-ad  192 (224)
                         +...|..   +|++.+-+  ++.  .+ .... + .-....+.   .....+..+.+-|++ +.+.+..+++.| +|
T Consensus       239 ~~~la~~L~~~G~~d~i~vs~--~~~~~~~~~~~~~~~~~~~~a~~---i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aD  313 (363)
T COG1902         239 AVELAKALEEAGLVDYIHVSE--GGYERGGTITVSGPGYQVEFAAR---IKKAVRIPVIAVGGINDPEQAEEILASGRAD  313 (363)
T ss_pred             HHHHHHHHHHCCCCCEEEEEC--CCCCCCCCCCCCCCCHHHHHHHH---HHHHCCCCEEEECCCCCHHHHHHHHHCCCCC
T ss_conf             999999998558844799603--64457887444664124789999---9886078779868979999999999829988


Q ss_pred             EEEECHHHHCCCCHHHHH
Q ss_conf             999742663789989999
Q gi|254780975|r  193 LLVVGSSFFNQKGEISYA  210 (224)
Q Consensus       193 ~~V~Gsaif~~~d~~~~~  210 (224)
                      .+-.|..+.-+|+....+
T Consensus       314 lVa~gR~~ladP~~v~k~  331 (363)
T COG1902         314 LVAMGRPFLADPDLVLKA  331 (363)
T ss_pred             EEEECHHHHCCCCHHHHH
T ss_conf             887263665092089999


No 466
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.     The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported.   This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=50.09  E-value=20  Score=16.62  Aligned_cols=116  Identities=18%  Similarity=0.318  Sum_probs=72.2

Q ss_pred             EECCCCC-CHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHHHCC-EEEEEEEECCCCCCCCCCHH----------HHH
Q ss_conf             9706642-158999867764982-5998523334478998862014-02899830677653322013----------577
Q gi|254780975|r   91 FHPESSP-HIRRSLRTIHAMGKK-TGVAINPETPVAILEDVIDEID-MILIMTVNPGFGGQQLIEST----------IPK  157 (224)
Q Consensus        91 ~H~E~~~-~~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~~~D-~vliM~V~PG~~Gq~f~~~~----------l~k  157 (224)
                      +|....+ .|...++.-++.|.. .|+.+.=.--.+.+..+++.+- =|+|.|-+-++.-++=...-          .+-
T Consensus       117 LH~DGD~~YL~~C~~~Y~~~gv~V~G~~~~E~emPe~v~~L~~~~~PDIlViTGHDa~~K~~~~~~DL~aYRhSkyFv~~  196 (292)
T TIGR02855       117 LHIDGDPEYLRKCLKLYKKLGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYGDLNAYRHSKYFVET  196 (292)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCEEECCCCHHHHHHCCCCHHHHHH
T ss_conf             74228888999999988661972799998412180889999973099789994666302167871136423665689999


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECH-HHHCCCCHH
Q ss_conf             89986543138652698158998899999967998999742-663789989
Q gi|254780975|r  158 IRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGS-SFFNQKGEI  207 (224)
Q Consensus       158 I~~l~~~~~~~~~~I~vDGGvn~~~i~~l~~~Gad~~V~Gs-aif~~~d~~  207 (224)
                      |+++|+..|+.+--+.--|- =+.+...|++||||..-+=+ -..=.-||.
T Consensus       197 V~~aR~~~P~lD~LVIFAGA-CQShfE~li~AGANFASSP~RVnIHaLDPV  246 (292)
T TIGR02855       197 VREARKYVPSLDQLVIFAGA-CQSHFESLIRAGANFASSPSRVNIHALDPV  246 (292)
T ss_pred             HHHHHHHCCCCCCHHHHHCC-CHHHHHHHHHHCCCCCCCCCCHHHHCCCHH
T ss_conf             99986317875323433212-144579999745654577110112226730


No 467
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=49.82  E-value=20  Score=16.59  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=11.3

Q ss_pred             CHHHHHHHHHHHHHCC--CCEEEEEE
Q ss_conf             8899999999999659--98999973
Q gi|254780975|r   15 DFSRLGEEISNITKAG--AKQIHFDV   38 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~--~d~iHiDI   38 (224)
                      +..++.+.++...+.+  +|.+++|+
T Consensus        22 ~~~~v~~~~~~~r~~~iP~d~i~~D~   47 (308)
T cd06593          22 DEEEVNEFADGMRERNLPCDVIHLDC   47 (308)
T ss_pred             CHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             99999999999998399964699707


No 468
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=49.66  E-value=20  Score=16.58  Aligned_cols=100  Identities=16%  Similarity=0.239  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCC---HHHHHHHHHHCCEEEEEEEECCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             589998677649825998523334---478998862014028998306776533-2201357789986543138652698
Q gi|254780975|r   99 IRRSLRTIHAMGKKTGVAINPETP---VAILEDVIDEIDMILIMTVNPGFGGQQ-LIESTIPKIRQAKALIGKRSISLEV  174 (224)
Q Consensus        99 ~~~~i~~i~~~g~k~Giai~p~T~---~~~i~~~l~~~D~vliM~V~PG~~Gq~-f~~~~l~kI~~l~~~~~~~~~~I~v  174 (224)
                      ..+.++.+++.|++++|- +-++.   ++.+..+  .+|+|=+   ++.+-.+- -.+.....++.+.++....++.+.+
T Consensus       135 ~~~~i~~l~~~G~~iaiD-dfG~~~~~~~~l~~l--~~d~iKl---d~~li~~~~~~~~~~~~~~~l~~~a~~~g~~via  208 (241)
T smart00052      135 AVATLQRLRELGVRIALD-DFGTGYSSLSYLKRL--PVDLLKI---DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVA  208 (241)
T ss_pred             HHHHHHHHHHCCCCEEEC-CCCCCCCHHHHHHHC--CCHHHCC---CHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             999999999709978753-789981018999865--7204224---7999961326845589999999999985998999


Q ss_pred             ECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf             15899889999996799899974266378998
Q gi|254780975|r  175 DGGVTSRNIKSLVQAGADLLVVGSSFFNQKGE  206 (224)
Q Consensus       175 DGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~  206 (224)
                      .|==+.+....+.+.|+| ++.|. .|+.|-|
T Consensus       209 egVE~~~~~~~l~~~Gi~-~~QG~-~~~~P~p  238 (241)
T smart00052      209 EGVETPEQLDLLRSLGCD-YGQGY-LFSRPLP  238 (241)
T ss_pred             EECCCHHHHHHHHHCCCC-EEECC-CCCCCCC
T ss_conf             718819999999974999-98868-6475899


No 469
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=49.56  E-value=21  Score=16.57  Aligned_cols=99  Identities=20%  Similarity=0.307  Sum_probs=49.2

Q ss_pred             EEEEECCCCHHHHHHHHHHCC---EEEEEEEECCC--------CCCCCCCHHHH---------------------HHHHH
Q ss_conf             998523334478998862014---02899830677--------65332201357---------------------78998
Q gi|254780975|r  114 GVAINPETPVAILEDVIDEID---MILIMTVNPGF--------GGQQLIESTIP---------------------KIRQA  161 (224)
Q Consensus       114 Giai~p~T~~~~i~~~l~~~D---~vliM~V~PG~--------~Gq~f~~~~l~---------------------kI~~l  161 (224)
                      .+.+||..-.+.++|++.+-|   +||+.|-|||-        .++++=+.+..                     -++++
T Consensus       118 AvTvnPYmG~Dsv~PFl~~~~KgvfvL~~TSNpgs~d~Q~~~~~~~pLY~~V~~~~~~W~~~~~~~lVVGAT~p~~l~~i  197 (478)
T PRK05500        118 AVTLSPYAGQDHVAPFLVYPDKGVFILCHTSNPGAEALQEYPTQENPFYLQVVKEAKTWGTPEQLGLEVGTTNPEVLAKI  197 (478)
T ss_pred             EEEECCCCCCCCCCHHHCCCCCCEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
T ss_conf             79844656755431433169974799982699787889718478982899999999971998867999777989999999


Q ss_pred             HHHHHCCCC---EEEEECCCCHHHHHHHHHCCCCE-----EE-ECHHHHCCCCHHHHHHHHHHH
Q ss_conf             654313865---26981589988999999679989-----99-742663789989999999999
Q gi|254780975|r  162 KALIGKRSI---SLEVDGGVTSRNIKSLVQAGADL-----LV-VGSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       162 ~~~~~~~~~---~I~vDGGvn~~~i~~l~~~Gad~-----~V-~Gsaif~~~d~~~~~~~l~~l  216 (224)
                      |+..|+.-+   .|...||=    +..+.++|.|.     ++ +-.++.+++|+.+.++.+++-
T Consensus       198 R~~~P~~~lLvPGiGAQGGd----L~~~l~aGLn~~G~GllIpv~r~~l~~~~~~~~~~~l~~~  257 (478)
T PRK05500        198 RQIAPERLILLRSIWAEGGN----LNQILTAGLNSNGDGLLIPVPQDLLGSANLKEQVKSLREE  257 (478)
T ss_pred             HHHCCCCEEECCCCCCCCCC----HHHHHHHCCCCCCCEEEEECCHHHHCCCCHHHHHHHHHHH
T ss_conf             98689987872674667559----9999983478899777896898885599989999999999


No 470
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in  bacterial endospore germination.  CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells.  SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore.  As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex.  CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains.  In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=49.42  E-value=21  Score=16.55  Aligned_cols=120  Identities=18%  Similarity=0.251  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEE-----------------ECC---H
Q ss_conf             99999999999659989999734263458434178999986412564168567885-----------------120---3
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMIS-----------------SID---S   76 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~-----------------~P~---~   76 (224)
                      ..++.....+..-.--|++++ -||.....-  ++..++.-++ .+.  .+-+|+.                 +|.   +
T Consensus        17 ~~~~~~~~klt~i~p~w~~~~-~~G~l~~~~--~~~~~~~a~~-~~~--kv~~~i~~~~~~~~~~~~~~~~ls~~~~R~~   90 (313)
T cd02874          17 ESLRANAPYLTYIAPFWYGVD-ADGTLTGLP--DERLIEAAKR-RGV--KPLLVITNLTNGNFDSELAHAVLSNPEARQR   90 (313)
T ss_pred             HHHHHHHCCCCEEEEEEEEEC-CCCCCCCCC--CHHHHHHHHH-CCC--EEEEEEECCCCCCCCHHHHHHHHCCHHHHHH
T ss_conf             789962540889999999973-798763579--8799999997-799--5999994677888788999999679999999


Q ss_pred             H----HHHHCCCCCCEEEEECCCCC--C---HHHHHHH----HHHCCCEEEEEEECCCCH---------HHHHHHHHHCC
Q ss_conf             3----67640477607999706642--1---5899986----776498259985233344---------78998862014
Q gi|254780975|r   77 H----INIIADAGCDIITFHPESSP--H---IRRSLRT----IHAMGKKTGVAINPETPV---------AILEDVIDEID  134 (224)
Q Consensus        77 ~----i~~~~~~g~d~i~~H~E~~~--~---~~~~i~~----i~~~g~k~Giai~p~T~~---------~~i~~~l~~~D  134 (224)
                      +    ++.+.+.|-|=|-+..|...  +   ...+++.    +++.|...-+++-|.++.         ..+..+.+.+|
T Consensus        91 fi~siv~~~~~~~fDGidiDwE~~~~~d~~~~~~fl~eLr~~l~~~~~~ls~~v~p~~~~~~~~~~~~~yD~~~l~~~vD  170 (313)
T cd02874          91 LINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHPAGYTLSTAVVPKTSADQFGNWSGAYDYAAIGKIVD  170 (313)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf             99999999998199857996323998999999999999999870469779999945756544555322356999975356


Q ss_pred             EEEEEEEE
Q ss_conf             02899830
Q gi|254780975|r  135 MILIMTVN  142 (224)
Q Consensus       135 ~vliM~V~  142 (224)
                      ++.+||=+
T Consensus       171 ~i~vMtYD  178 (313)
T cd02874         171 FVVLMTYD  178 (313)
T ss_pred             EEEEEEEC
T ss_conf             99998412


No 471
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=49.27  E-value=21  Score=16.54  Aligned_cols=163  Identities=17%  Similarity=0.215  Sum_probs=80.4

Q ss_pred             EEEECCEECCCCCCC-HHHHHHHHHC-CCCEEEEEEEEEECC-HHHHHHCCC-CCCEEEEECCCCCCHHHHHHHHHHC--
Q ss_conf             973426345843417-8999986412-564168567885120-336764047-7607999706642158999867764--
Q gi|254780975|r   36 FDVMDGCFVPNISFG-ADVIRSLRSY-SDSVFDCHLMISSID-SHINIIADA-GCDIITFHPESSPHIRRSLRTIHAM--  109 (224)
Q Consensus        36 iDImDg~fvpn~~~~-~~~i~~i~~~-t~~~~dvHLMv~~P~-~~i~~~~~~-g~d~i~~H~E~~~~~~~~i~~i~~~--  109 (224)
                      +|..=|..+-|++.+ |++++.+++. .++..--+.+...|. ++.+++.+. +.|++.|-.-.++-.+..++..|..  
T Consensus        43 lD~~~g~~~~~lGh~~p~I~~Ai~~Q~~~l~~~~~~~~~~~~~~lae~L~~~~~~drv~f~~SGSEAvE~AiklAr~~~~  122 (403)
T PRK05093         43 IDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLVDATFAERVFFANSGAEANEAALKLARRYAC  122 (403)
T ss_pred             EECCCCHHHCEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             99550888503289979999999999875577757414889999999986416877599838677899999999999999


Q ss_pred             -----CCEE---------------------------------EEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCC
Q ss_conf             -----9825---------------------------------99852333447899886201402899830677653322
Q gi|254780975|r  110 -----GKKT---------------------------------GVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLI  151 (224)
Q Consensus       110 -----g~k~---------------------------------Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~  151 (224)
                           +.+-                                 ++.--|..+++.++..++  |.+--+-++|-.+.....
T Consensus       123 ~~~~~~r~~ii~~~~~yHG~t~~a~s~~g~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~--~~iaAviiEPi~g~gG~~  200 (403)
T PRK05093        123 DRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAALKAVID--DKTCAVVVEPIQGEGGVI  200 (403)
T ss_pred             HHCCCCCCEEEEECCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCEECCCCCHHHHHHCCC--CCEEEEEEECCCCCCCCC
T ss_conf             728998754777758868883687762588011027789997756556336888860337--744799995766789975


Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEEE---CCC-CHHHH--HHHHHCCCCEEEECHHH
Q ss_conf             013577899865431386526981---589-98899--99996799899974266
Q gi|254780975|r  152 ESTIPKIRQAKALIGKRSISLEVD---GGV-TSRNI--KSLVQAGADLLVVGSSF  200 (224)
Q Consensus       152 ~~~l~kI~~l~~~~~~~~~~I~vD---GGv-n~~~i--~~l~~~Gad~~V~Gsai  200 (224)
                      +..-+-++++|++..++++.+.+|   -|. +....  -+-...-+|+++.|-++
T Consensus       201 ~~~~~yl~~lr~lc~~~gillI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~gKgl  255 (403)
T PRK05093        201 PATPEFLQGLRELCDKHNALLIFDEVQTGMGRTGDLYAYMHYGVTPDILTSAKAL  255 (403)
T ss_pred             CCCHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf             8999999999986301683798601342688777752223689899889973001


No 472
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=49.14  E-value=21  Score=16.53  Aligned_cols=55  Identities=16%  Similarity=0.026  Sum_probs=21.1

Q ss_pred             HCCCCEEEEEEEEEECCHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf             125641685678851203367640477607-9997066421589998677649825998
Q gi|254780975|r   59 SYSDSVFDCHLMISSIDSHINIIADAGCDI-ITFHPESSPHIRRSLRTIHAMGKKTGVA  116 (224)
Q Consensus        59 ~~t~~~~dvHLMv~~P~~~i~~~~~~g~d~-i~~H~E~~~~~~~~i~~i~~~g~k~Gia  116 (224)
                      +..++|+-+|. ..--+...+.+.+.+... ..+|+=+..  .+..+.+-+.|..+|++
T Consensus       124 ~~~~lPvviH~-R~A~~~~~~~l~~~~~~~~gi~H~FsG~--~~~a~~~l~~G~yiS~~  179 (258)
T PRK11449        124 KRYDLPVILHS-RRTHDKLAMHLKRHDLPRTGVVHGFSGS--LQQAERFVQLGYKIGVG  179 (258)
T ss_pred             HHHCCCEEEEC-HHHHHHHHHHHHHCCCCCCCEEEECCCC--HHHHHHHHHCCCEEEEC
T ss_conf             98499759862-2137999999985588857547627899--99999999769828765


No 473
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=48.98  E-value=21  Score=16.51  Aligned_cols=149  Identities=15%  Similarity=0.180  Sum_probs=75.6

Q ss_pred             HHHHHHHHHCCCCEEEEEEEE-----EECCHHHHHHCCCCCCEEEEECCCCC--------------CHHHHH---HHHHH
Q ss_conf             899998641256416856788-----51203367640477607999706642--------------158999---86776
Q gi|254780975|r   51 ADVIRSLRSYSDSVFDCHLMI-----SSIDSHINIIADAGCDIITFHPESSP--------------HIRRSL---RTIHA  108 (224)
Q Consensus        51 ~~~i~~i~~~t~~~~dvHLMv-----~~P~~~i~~~~~~g~d~i~~H~E~~~--------------~~~~~i---~~i~~  108 (224)
                      ...++.|..-+++|+-|.+=.     .|.-+.+..+.++|+.-+  |.|-..              ++++..   +.+++
T Consensus        67 ~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi--~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~  144 (289)
T COG2513          67 LADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGI--HIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVE  144 (289)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEE--EEEECCCCHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999998652787688656788738899999999997586266--4532255021278889876789999999999997


Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC----CEEEEECCCCHHHHH
Q ss_conf             4982599852333447899886201402899830677653322013577899865431386----526981589988999
Q gi|254780975|r  109 MGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRS----ISLEVDGGVTSRNIK  184 (224)
Q Consensus       109 ~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~----~~I~vDGGvn~~~i~  184 (224)
                      .-..+.+.|+.-|+.-....+=+-+.+.+- .++.|-.+ -|.|. +.-..+++++...-.    ..+.-.|+=-.-++.
T Consensus       145 a~~~~~fvi~ARTda~~~~~ld~AI~Ra~A-Y~eAGAD~-if~~a-l~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~  221 (289)
T COG2513         145 ARRDPDFVIIARTDALLVEGLDDAIERAQA-YVEAGADA-IFPEA-LTDLEEIRAFAEAVPVPLPANITEFGKTPLLTVA  221 (289)
T ss_pred             HCCCCCEEEEEEHHHHHHCCHHHHHHHHHH-HHHCCCCE-ECCCC-CCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH
T ss_conf             155888599961487775247999999999-99759768-71366-7999999999984687702686324898876899


Q ss_pred             HHHHCCCCEEEECHHHHCCC
Q ss_conf             99967998999742663789
Q gi|254780975|r  185 SLVQAGADLLVVGSSFFNQK  204 (224)
Q Consensus       185 ~l~~~Gad~~V~Gsaif~~~  204 (224)
                      .|.++|+..+.-|...|..-
T Consensus       222 ~L~~~Gv~~V~~~~~~~raa  241 (289)
T COG2513         222 ELAELGVKRVSYGLTAFRAA  241 (289)
T ss_pred             HHHHCCCEEEEECCHHHHHH
T ss_conf             99966964999784899999


No 474
>PRK13238 tnaA tryptophanase; Provisional
Probab=48.53  E-value=21  Score=16.47  Aligned_cols=65  Identities=23%  Similarity=0.356  Sum_probs=44.5

Q ss_pred             CCCCHHHHHHHHHH-----CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf             33344789988620-----140289983067765332201357789986543138652698158998899999
Q gi|254780975|r  119 PETPVAILEDVIDE-----IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSL  186 (224)
Q Consensus       119 p~T~~~~i~~~l~~-----~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn~~~i~~l  186 (224)
                      -+-+++.++.++..     +-+|++...+-.-+|||+   +.+.+|+.+++..++++.+..|..-=.||+--+
T Consensus       159 GN~Dl~kLe~~i~~~g~~~I~~v~~tiTnN~~GGQPV---Sm~Nir~v~~la~~~~ip~~lDaaRfaENAyFI  228 (461)
T PRK13238        159 GNFDLEKLEALIEEVGADNIPFIVMTITNNSAGGQPV---SMANLRAVYEIAKKYGIPVVLDAARFAENAYFI  228 (461)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC---CHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf             8779999999998738446548999986268788164---689999999999982995998656676645788


No 475
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=47.97  E-value=22  Score=16.41  Aligned_cols=120  Identities=20%  Similarity=0.265  Sum_probs=71.9

Q ss_pred             HCCCCCCEEEEECCCC--------------------------CCHHHHHHHHHHC-C--CEEEEEEEC------CCCHHH
Q ss_conf             4047760799970664--------------------------2158999867764-9--825998523------334478
Q gi|254780975|r   81 IADAGCDIITFHPESS--------------------------PHIRRSLRTIHAM-G--KKTGVAINP------ETPVAI  125 (224)
Q Consensus        81 ~~~~g~d~i~~H~E~~--------------------------~~~~~~i~~i~~~-g--~k~Giai~p------~T~~~~  125 (224)
                      ..++|.|.|-+|.-+.                          .-+.++++.+|+. +  .-.++=|+.      +..++.
T Consensus       565 A~~AGFD~IEiH~AHGYLl~qFLSPlsN~RtDeYGGsleNR~Rf~lEV~~aVR~~~p~~~Pl~vRiSatDw~~gG~t~ed  644 (770)
T PRK08255        565 AAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPADKPMSVRISAHDWVEGGNTPDD  644 (770)
T ss_pred             HHHCCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHH
T ss_conf             99839998999523455588753864467754357888877788999999999867898866999851025689999999


Q ss_pred             ---HHHHHHH--CCEEEEEEE--ECCC---CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHCC-CCE
Q ss_conf             ---9988620--140289983--0677---6533220135778998654313865269815899-88999999679-989
Q gi|254780975|r  126 ---LEDVIDE--IDMILIMTV--NPGF---GGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-SRNIKSLVQAG-ADL  193 (224)
Q Consensus       126 ---i~~~l~~--~D~vliM~V--~PG~---~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-~~~i~~l~~~G-ad~  193 (224)
                         +...+..  +|+|-+=+-  .|+.   .|..|+-.--++||      .+.++....=|.|+ .+.+..++..| ||.
T Consensus       645 sv~la~~l~~~GvD~IdvSsGg~~~~~~p~~g~~yQvpfA~~Ir------~e~~i~t~AVG~I~~p~~Ae~Il~~GrADl  718 (770)
T PRK08255        645 AVEIARAFKAAGADMIDVSSGQVSKDEKPVYGRMYQTPFADRIR------NEAGIATIAVGAISEADHVNSIIAAGRADL  718 (770)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHH------HHCCCCEEEECCCCCHHHHHHHHHCCCCCE
T ss_conf             99999999974998999578888866778888765669999999------875997899618899999999997699887


Q ss_pred             EEECHHHHCCCCH
Q ss_conf             9974266378998
Q gi|254780975|r  194 LVVGSSFFNQKGE  206 (224)
Q Consensus       194 ~V~Gsaif~~~d~  206 (224)
                      +.+|.....+|..
T Consensus       719 ValgR~~L~dP~W  731 (770)
T PRK08255        719 CALARPHLADPAW  731 (770)
T ss_pred             EEECHHHHCCCCH
T ss_conf             5247776519950


No 476
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=47.77  E-value=22  Score=16.39  Aligned_cols=165  Identities=18%  Similarity=0.289  Sum_probs=98.9

Q ss_pred             EEEEECCEECCCCCC-CHHHHHHHHHCCCCE-EEEEEEEEECC-HHHHHHCCCC--CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf             997342634584341-789999864125641-68567885120-3367640477--607999706642158999867764
Q gi|254780975|r   35 HFDVMDGCFVPNISF-GADVIRSLRSYSDSV-FDCHLMISSID-SHINIIADAG--CDIITFHPESSPHIRRSLRTIHAM  109 (224)
Q Consensus        35 HiDImDg~fvpn~~~-~~~~i~~i~~~t~~~-~dvHLMv~~P~-~~i~~~~~~g--~d~i~~H~E~~~~~~~~i~~i~~~  109 (224)
                      .+|..-|.=|.|++- .|.+++.+++.-+.. .--++...+|. .+.+++.+.-  .|+++|---.++-.+-.++..|..
T Consensus        44 YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~  123 (404)
T COG4992          44 YLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKY  123 (404)
T ss_pred             EEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             66603551110257789899999999997762113133786999999999962866668997578389999999999997


Q ss_pred             CC---EEE----------------------------------EEEECCCCHHHHHHHHHHCCEEEEEEEEC--CCCCCCC
Q ss_conf             98---259----------------------------------98523334478998862014028998306--7765332
Q gi|254780975|r  110 GK---KTG----------------------------------VAINPETPVAILEDVIDEIDMILIMTVNP--GFGGQQL  150 (224)
Q Consensus       110 g~---k~G----------------------------------iai~p~T~~~~i~~~l~~~D~vliM~V~P--G~~Gq~f  150 (224)
                      ..   |..                                  +..-|..+++.++..++. |..-+| ++|  |-+|  .
T Consensus       124 ~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~-~taAvi-vEPIQGEgG--V  199 (404)
T COG4992         124 TGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDE-DTAAVI-VEPIQGEGG--V  199 (404)
T ss_pred             CCCCCCCEEEEECCCCCCCCCEEEECCCCHHHCCCCCCCCCCCEECCCCCHHHHHHHHCC-CEEEEE-EECCCCCCC--C
T ss_conf             088887579997477577662336656884222678899999536178998999987365-758999-826668889--8


Q ss_pred             CCHHHHHHHHHHHHHHCCCCEE---EEECCC-CHHHH--HHHHHCCCCEEEECHHHHCC
Q ss_conf             2013577899865431386526---981589-98899--99996799899974266378
Q gi|254780975|r  151 IESTIPKIRQAKALIGKRSISL---EVDGGV-TSRNI--KSLVQAGADLLVVGSSFFNQ  203 (224)
Q Consensus       151 ~~~~l~kI~~l~~~~~~~~~~I---~vDGGv-n~~~i--~~l~~~Gad~~V~Gsaif~~  203 (224)
                      ++..-+-++.+|++.++++.-+   ||.=|+ +.-.+  -+....-+|++.++-+|=+.
T Consensus       200 ~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tlaK~LgGG  258 (404)
T COG4992         200 IPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGG  258 (404)
T ss_pred             CCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             77998999999999987192999964313888663178989748887778860124588


No 477
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=47.51  E-value=22  Score=16.37  Aligned_cols=42  Identities=17%  Similarity=0.185  Sum_probs=18.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHHCCC
Q ss_conf             32201357789986543138652--69815899889999996799
Q gi|254780975|r  149 QLIESTIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSLVQAGA  191 (224)
Q Consensus       149 ~f~~~~l~kI~~l~~~~~~~~~~--I~vDGGvn~~~i~~l~~~Ga  191 (224)
                      .|.+..+.-.+++-+.+.+++..  +.++|.. ...+..+.+.+.
T Consensus       248 qfeeF~~Pylkkl~~~i~~~G~~~~lh~~G~~-~~~~e~l~elp~  291 (378)
T cd03308         248 QFEKFYWPSFKKVVEGLAARGQRIFLFFEGDW-ERYLEYLQELPK  291 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHHHCCC
T ss_conf             98886206599999999966980599966870-779999985235


No 478
>KOG2672 consensus
Probab=47.44  E-value=22  Score=16.36  Aligned_cols=41  Identities=20%  Similarity=0.324  Sum_probs=20.3

Q ss_pred             EECCHHHHHHCCCCCCEEEEECCC--------CCCHHHHHHHHHHCCCE
Q ss_conf             512033676404776079997066--------42158999867764982
Q gi|254780975|r   72 SSIDSHINIIADAGCDIITFHPES--------SPHIRRSLRTIHAMGKK  112 (224)
Q Consensus        72 ~~P~~~i~~~~~~g~d~i~~H~E~--------~~~~~~~i~~i~~~g~k  112 (224)
                      ..|++-.+.++.-|.+||.+-.--        .+++.+++++|+...-.
T Consensus       142 ~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~  190 (360)
T KOG2672         142 NEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPE  190 (360)
T ss_pred             CCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             9864489999971888699971145647675227899999999852842


No 479
>pfam10566 Glyco_hydro_97 Glycoside hydrolase 97. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.
Probab=47.42  E-value=21  Score=16.50  Aligned_cols=40  Identities=10%  Similarity=0.025  Sum_probs=19.7

Q ss_pred             HHHHHHHHHCCCCEEEEECCCC------HHHHHHHHHCCCCEEEEC
Q ss_conf             8998654313865269815899------889999996799899974
Q gi|254780975|r  158 IRQAKALIGKRSISLEVDGGVT------SRNIKSLVQAGADLLVVG  197 (224)
Q Consensus       158 I~~l~~~~~~~~~~I~vDGGvn------~~~i~~l~~~Gad~~V~G  197 (224)
                      ++++-++-.++++.|.+=.+.+      .+-.+.+.+.|+.-+=.|
T Consensus       353 l~~lv~Ya~~KgV~i~lw~~~~~~~~~~~~~f~~~~~~Gv~GvKvd  398 (643)
T pfam10566       353 LQELIAYGKSKGVGIILWTNQKALYAQLDEAFKLYEKWGVVGFKVD  398 (643)
T ss_pred             HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             7999999986796399983566789989999999998299727756


No 480
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase; InterPro: IPR004621 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in eukaryotes, and currently designated methylenetetrahydrofolate reductase (1.5.1.20 from EC). This protein is an FAD-containing flavoprotein.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process.
Probab=47.29  E-value=22  Score=16.35  Aligned_cols=84  Identities=21%  Similarity=0.338  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE----
Q ss_conf             5899986776498259985233344789988620140289983067765332201357789986543138652698----
Q gi|254780975|r   99 IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEV----  174 (224)
Q Consensus        99 ~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~v----  174 (224)
                      +...++.+++.|++=-|||+-+=|..       .-||+---.++=||.      .+.+-||.+|.-+..+ |.|.|    
T Consensus        82 ID~AL~~~~~~G~~NiLALRGDPP~~-------~~~wlds~~~EgGF~------YA~DLV~yIr~~YGD~-F~IgVAGYP  147 (312)
T TIGR00677        82 IDDALERAKSNGIQNILALRGDPPHG-------DEDWLDSTEVEGGFK------YAVDLVKYIRSKYGDY-FCIGVAGYP  147 (312)
T ss_pred             HHHHHHHHHHCCCCEEECCCCCCCCC-------CCCCCCCCCCCCCHH------HHHHHHHHHHHHCCCC-CCEEECCCC
T ss_conf             99999999865653340037610687-------655334567875157------6678899877523880-211202787


Q ss_pred             -----------------EC------CCCHHHHHHHHHCCCCEEEE
Q ss_conf             -----------------15------89988999999679989997
Q gi|254780975|r  175 -----------------DG------GVTSRNIKSLVQAGADLLVV  196 (224)
Q Consensus       175 -----------------DG------Gvn~~~i~~l~~~Gad~~V~  196 (224)
                                       |.      --..+.+++=+++|||.+|-
T Consensus       148 EgHpe~i~~Gla~~~~kd~GheqdP~~DL~yLK~KV~aGADfIiT  192 (312)
T TIGR00677       148 EGHPEAIEDGLASNEAKDVGHEQDPEKDLKYLKEKVDAGADFIIT  192 (312)
T ss_pred             CCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             778346652025775324675457367899998863058974752


No 481
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=46.97  E-value=22  Score=16.31  Aligned_cols=193  Identities=15%  Similarity=0.226  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHC-----CCCEEEEEEECCEECCCCCCCHHHH----HHHHHCCCCE--EEEEEEEEECC----HHHHH
Q ss_conf             89999999999965-----9989999734263458434178999----9864125641--68567885120----33676
Q gi|254780975|r   16 FSRLGEEISNITKA-----GAKQIHFDVMDGCFVPNISFGADVI----RSLRSYSDSV--FDCHLMISSID----SHINI   80 (224)
Q Consensus        16 ~~~l~~~i~~l~~~-----~~d~iHiDImDg~fvpn~~~~~~~i----~~i~~~t~~~--~dvHLMv~~P~----~~i~~   80 (224)
                      ...|.+|++...+.     .++.+|+  --|+  |++ ++++.+    ..|++..++.  .|+-+- -||.    .++..
T Consensus        85 l~~L~~Ei~~~~~~l~~~~~v~~i~~--GGGT--Ps~-L~~~~l~~l~~~l~~~f~~~~~~EitiE-~nP~~~~~~~l~~  158 (456)
T PRK09249         85 LDALEKEIALVAPLLPGGRKVSQLHW--GGGT--PTF-LSPEQLTRLMALLREHFNFAPDAEISIE-IDPRELDLEMLDA  158 (456)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEE--CCCC--HHH-CCHHHHHHHHHHHHHHCCCCCCCEEEEE-ECCCCCCHHHHHH
T ss_conf             99999999998876178983679997--8967--064-9999999999999986688988359998-4347587999999


Q ss_pred             HCCCCCCEEEEECCCC--------------CCHHHHHHHHHHCCCE-EEEEE---ECCCCHHHHHHHHHH-----CCEEE
Q ss_conf             4047760799970664--------------2158999867764982-59985---233344789988620-----14028
Q gi|254780975|r   81 IADAGCDIITFHPESS--------------PHIRRSLRTIHAMGKK-TGVAI---NPETPVAILEDVIDE-----IDMIL  137 (224)
Q Consensus        81 ~~~~g~d~i~~H~E~~--------------~~~~~~i~~i~~~g~k-~Giai---~p~T~~~~i~~~l~~-----~D~vl  137 (224)
                      +.++|++++++=+-+.              +...+.++.+|+.|.. +.+-|   -|+...+.+..-+..     .|.|-
T Consensus       159 l~~~GvnRiSlGVQsfd~~vl~~igR~h~~~~~~~~i~~ar~~Gf~~in~DLIyGLP~QT~~~~~~tl~~~~~l~Pdhis  238 (456)
T PRK09249        159 LRELGFNRLSLGVQDFDPEVQKAINRIQPFELTFALVEAARELGFTSINFDLIYGLPKQTPESFARTLEKVLELRPDRLA  238 (456)
T ss_pred             HHHCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf             98459756886053578799998528899999999999999819972104886069987699999999999655998899


Q ss_pred             EEE--EECC-CCCCCCC-----CHHHHHHH---HHHHHHHCCCCE-EEEECCCCHH-HHHHH--------------HHCC
Q ss_conf             998--3067-7653322-----01357789---986543138652-6981589988-99999--------------9679
Q gi|254780975|r  138 IMT--VNPG-FGGQQLI-----ESTIPKIR---QAKALIGKRSIS-LEVDGGVTSR-NIKSL--------------VQAG  190 (224)
Q Consensus       138 iM~--V~PG-~~Gq~f~-----~~~l~kI~---~l~~~~~~~~~~-I~vDGGvn~~-~i~~l--------------~~~G  190 (224)
                      +.+  ..|. +..|..+     |..-+|..   ...+.+.+.++. |++|-=.... .+...              ...+
T Consensus       239 ~y~yah~P~~~~~qr~i~~~~LP~~~~~~~m~~~a~~~L~~aGY~~igidhFA~p~DeLa~A~~~g~l~RNfqGYt~~~~  318 (456)
T PRK09249        239 VFNYAHVPWLFKAQRKIDEADLPSPEEKLEILQAAIETLTEAGYQYIGMDHFALPDDELAIAQREGTLHRNFQGYTTDGD  318 (456)
T ss_pred             ECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHCCCEEECCCCCCCCCC
T ss_conf             50223472045565303656797999999999999999997798585356444788479999865964565625557999


Q ss_pred             CCEEEEC-HHH--------HCCCCHHHHHHHHH
Q ss_conf             9899974-266--------37899899999999
Q gi|254780975|r  191 ADLLVVG-SSF--------FNQKGEISYAKRLN  214 (224)
Q Consensus       191 ad~~V~G-sai--------f~~~d~~~~~~~l~  214 (224)
                      .|.+=.| ||+        .|.++...+.+.+.
T Consensus       319 ~~~lGlG~sA~S~~~~~~~qN~~~l~~Y~~~i~  351 (456)
T PRK09249        319 CDLLGLGVSAISRIGDGYAQNAKDLKAYYAAVD  351 (456)
T ss_pred             CCEEEECCCCCEECCCCEEECCCCHHHHHHHHH
T ss_conf             855974464310059955775769999999987


No 482
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886    Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=46.90  E-value=12  Score=18.12  Aligned_cols=15  Identities=27%  Similarity=0.251  Sum_probs=6.2

Q ss_pred             EEEC-C-CCCCCCCCHH
Q ss_conf             8306-7-7653322013
Q gi|254780975|r  140 TVNP-G-FGGQQLIEST  154 (224)
Q Consensus       140 ~V~P-G-~~Gq~f~~~~  154 (224)
                      +-.| | -=||.-.+.+
T Consensus       185 GA~p~GY~iGe~~~~~t  201 (341)
T TIGR01179       185 GADPEGYEIGEDPPGIT  201 (341)
T ss_pred             CCCCCCCCCCCCCCCCC
T ss_conf             44888772366852029


No 483
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=46.74  E-value=23  Score=16.29  Aligned_cols=172  Identities=17%  Similarity=0.147  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEE--EEEEEE--EECCHHHHHHCCCCCCEEEEEC
Q ss_conf             999999999965998999973426345843417899998641256416--856788--5120336764047760799970
Q gi|254780975|r   18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF--DCHLMI--SSIDSHINIIADAGCDIITFHP   93 (224)
Q Consensus        18 ~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~--dvHLMv--~~P~~~i~~~~~~g~d~i~~H~   93 (224)
                      +-.+-.+.|++.|+|++-+    |.++- -...++.++.+..  ..++  .+-.-.  .+-..-++.+..+|++.|.+-.
T Consensus        25 ~Ki~Ia~~Ld~lGv~~IE~----g~p~~-s~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if~   97 (409)
T COG0119          25 EKIRIAKALDDLGVDYIEA----GFPVA-SPGDFEFVRAIAE--KAGLFICALIAALARAIKRDIEALLEAGVDRIHIFI   97 (409)
T ss_pred             HHHHHHHHHHHCCCCEEEE----ECCCC-CHHHHHHHHHHHH--HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9999999999769987997----27868-8546999999987--468632202233178677559999757999899997


Q ss_pred             CCCC----------------CHHHHHHHHHHCCCEEEEEEEC--CCCHHHHHHHHHHCCEEEEEEEE-CCCCCCCCCCHH
Q ss_conf             6642----------------1589998677649825998523--33447899886201402899830-677653322013
Q gi|254780975|r   94 ESSP----------------HIRRSLRTIHAMGKKTGVAINP--ETPVAILEDVIDEIDMILIMTVN-PGFGGQQLIEST  154 (224)
Q Consensus        94 E~~~----------------~~~~~i~~i~~~g~k~Giai~p--~T~~~~i~~~l~~~D~vliM~V~-PG~~Gq~f~~~~  154 (224)
                      -+.+                -..+.+++++++|..+....--  .|+++.+....+.+-..-.-.++ |---|-.--...
T Consensus        98 ~tSd~h~~~~~~~t~~e~l~~~~~~v~~a~~~g~~~~~~~Ed~~rt~~e~l~~~~~~~~~~ga~~i~l~DTvG~~~P~~~  177 (409)
T COG0119          98 ATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVGVATPNEV  177 (409)
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf             47889999884899999999999999999973975898753133679999999999999719949997787686587999


Q ss_pred             HHHHHHHHHHHHC-CC--CEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf             5778998654313-86--526981589988999999679989997
Q gi|254780975|r  155 IPKIRQAKALIGK-RS--ISLEVDGGVTSRNIKSLVQAGADLLVV  196 (224)
Q Consensus       155 l~kI~~l~~~~~~-~~--~~I~vDGGvn~~~i~~l~~~Gad~~V~  196 (224)
                      .+.++.+++-.++ ..  +...=|-|.---|.-...++||+.+=.
T Consensus       178 ~~~i~~l~~~v~~~~~i~~H~HND~G~AvANslaAv~aGa~~v~~  222 (409)
T COG0119         178 ADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEG  222 (409)
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             999999998378887388983698565999999999848838999


No 484
>TIGR00874 talAB transaldolase; InterPro: IPR004730   Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated  in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.   Transaldolase is evolutionary related  to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0004801 transaldolase activity, 0006098 pentose-phosphate shunt, 0005737 cytoplasm.
Probab=46.52  E-value=12  Score=17.97  Aligned_cols=69  Identities=19%  Similarity=0.291  Sum_probs=43.1

Q ss_pred             CCHHHHHHHHHCCCCE------EEEEEEEEECCHHHHHHCCCCCC--EEEEECCCCCCHHHHHHHHH-HCCCEEEEEE
Q ss_conf             1789999864125641------68567885120336764047760--79997066421589998677-6498259985
Q gi|254780975|r   49 FGADVIRSLRSYSDSV------FDCHLMISSIDSHINIIADAGCD--IITFHPESSPHIRRSLRTIH-AMGKKTGVAI  117 (224)
Q Consensus        49 ~~~~~i~~i~~~t~~~------~dvHLMv~~P~~~i~~~~~~g~d--~i~~H~E~~~~~~~~i~~i~-~~g~k~Giai  117 (224)
                      ||.++++-+.-.-...      +|..=||+.-...+..|.+.|++  +|-+-.-+|=+=-+.-+.+- +.|+.|=+.|
T Consensus        83 fG~eILK~vPGRvStEvDARLSfd~~A~i~kA~~Li~Ly~~~G~~k~RiLiKiASTWeGI~AAe~LE~~~GI~CNlTL  160 (324)
T TIGR00874        83 FGLEILKIVPGRVSTEVDARLSFDTEATIEKARHLIKLYEKAGVDKKRILIKIASTWEGIRAAEELEVKEGIHCNLTL  160 (324)
T ss_pred             HHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf             877886117993201100213556588999999999999965899450577528761478999998874796402288


No 485
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase; InterPro: IPR006405   A deep split separates two related families of proteins, one of which includes experimentally characterised examples of nicotinate phosphoribosyltransferase, the first enzyme of NAD salvage biosynthesis. This entry represents the other family. Members have a different (longer) spacing of several key motifs and have an additional C-terminal domain of up to 100 residues. One argument suggesting that this family represents the same enzyme is that no species has a member of both families. Another is that the gene encoding this protein is located near other NAD salvage biosynthesis genes in Nostoc and in at least four different Gram-positive bacteria. NAD and NADP are ubiquitous in life. Most members of this family are from Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cut-offs. .
Probab=46.51  E-value=23  Score=16.27  Aligned_cols=101  Identities=15%  Similarity=0.173  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHCCCEEEEEEEC-CCCHHHHHHHHHHC----CEEE-EEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC---
Q ss_conf             589998677649825998523-33447899886201----4028-99830677653322013577899865431386---
Q gi|254780975|r   99 IRRSLRTIHAMGKKTGVAINP-ETPVAILEDVIDEI----DMIL-IMTVNPGFGGQQLIESTIPKIRQAKALIGKRS---  169 (224)
Q Consensus        99 ~~~~i~~i~~~g~k~Giai~p-~T~~~~i~~~l~~~----D~vl-iM~V~PG~~Gq~f~~~~l~kI~~l~~~~~~~~---  169 (224)
                      .+-+-.+.+-++..+-+=|.- +|=-+-+.+.+.-.    +..- +++|..--|      +...-=+++|+.+++.+   
T Consensus       236 ~~AFrAYA~~YP~~~~lL~DTYDtL~SG~~nai~va~eLg~~~~~~~gVRiDSG------DL~~LSk~~R~~LD~AGaqf  309 (523)
T TIGR01513       236 LEAFRAYAKLYPKNTVLLVDTYDTLRSGLPNAIAVAKELGEQGKEVVGVRIDSG------DLAYLSKKVRKELDEAGAQF  309 (523)
T ss_pred             HHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHH------HHHHHHHHHHHHHHHHCHHC
T ss_conf             899999999758971675111667767899999999997520550588996117------79999999999998611111


Q ss_pred             ----C---EEEEECCCCHHHHHHHHHCC--CCEEEECHHHHCCCC
Q ss_conf             ----5---26981589988999999679--989997426637899
Q gi|254780975|r  170 ----I---SLEVDGGVTSRNIKSLVQAG--ADLLVVGSSFFNQKG  205 (224)
Q Consensus       170 ----~---~I~vDGGvn~~~i~~l~~~G--ad~~V~Gsaif~~~d  205 (224)
                          +   +|.|=|++.+..|..|...|  +|++=+|+.+.-+.+
T Consensus       310 qvPWL~~vkI~VSn~LDE~~I~~L~~~gapID~~GVGT~LvTa~~  354 (523)
T TIGR01513       310 QVPWLEEVKIVVSNDLDENSIAALKAEGAPIDVYGVGTSLVTASD  354 (523)
T ss_pred             CCCCHHCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCEEEECCC
T ss_conf             586003754899674047899999965894538884678898478


No 486
>PRK05826 pyruvate kinase; Provisional
Probab=46.26  E-value=23  Score=16.24  Aligned_cols=145  Identities=14%  Similarity=0.161  Sum_probs=77.8

Q ss_pred             EEECCHHHHHHCCCCCCEEEEECC-CCCCHHHHHHHHHHCC-CEEEEEEECCCC--HHHHHHHHHHCCEEEEE----EEE
Q ss_conf             851203367640477607999706-6421589998677649-825998523334--47899886201402899----830
Q gi|254780975|r   71 ISSIDSHINIIADAGCDIITFHPE-SSPHIRRSLRTIHAMG-KKTGVAINPETP--VAILEDVIDEIDMILIM----TVN  142 (224)
Q Consensus        71 v~~P~~~i~~~~~~g~d~i~~H~E-~~~~~~~~i~~i~~~g-~k~Giai~p~T~--~~~i~~~l~~~D~vliM----~V~  142 (224)
                      ++.=.+.++...+.|+|+|.+-+= +.+++.++-+.+++.| .++.|--.-+|+  ++.+..++...|.|++=    +++
T Consensus       172 TekD~~di~fa~~~~vD~ialSFVrsa~DV~~lr~~l~~~~~~~~~IIaKIE~~~al~NldeIi~~sDgIMIARGDLgvE  251 (461)
T PRK05826        172 TEKDKADIKFAAEQGVDYIAVSFVRNAEDVEEARRLLREAGNCDAKIIAKIERAEAVDNLDEIIEASDGIMVARGDLGVE  251 (461)
T ss_pred             CHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEECCCCCCC
T ss_conf             86689999999976999997468898678999999999729998448998368899873999998658999977853032


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC----------C---HHHHHHHHHCCCCEEEECHHHHCCCCHHHH
Q ss_conf             677653322013577899865431386526981589----------9---889999996799899974266378998999
Q gi|254780975|r  143 PGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV----------T---SRNIKSLVQAGADLLVVGSSFFNQKGEISY  209 (224)
Q Consensus       143 PG~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGv----------n---~~~i~~l~~~Gad~~V~Gsaif~~~d~~~~  209 (224)
                      -++.--+      .-=+++-+...+.+-.+.|-.-+          +   ...+...+--|+|.+.+..---..+.|.++
T Consensus       252 i~~e~vp------~~Qk~Ii~~c~~~gkpvivATqmLeSM~~~p~PTRAEv~DVanAv~dG~DavmLS~ETA~G~yPv~a  325 (461)
T PRK05826        252 IPDAEVP------GLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEA  325 (461)
T ss_pred             CCHHHHH------HHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHCCCCCHHHH
T ss_conf             6876749------9999999988754998999765689760799997277878999998368789974322378788999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999786
Q gi|254780975|r  210 AKRLNDLKKSAL  221 (224)
Q Consensus       210 ~~~l~~l~~~a~  221 (224)
                      .+.+..+...++
T Consensus       326 V~~m~~I~~~aE  337 (461)
T PRK05826        326 VEAMARICKGAE  337 (461)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999997


No 487
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY.  CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain.  All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.09  E-value=23  Score=16.23  Aligned_cols=24  Identities=8%  Similarity=0.329  Sum_probs=15.2

Q ss_pred             CHHHHHHHHHHHHHCC--CCEEEEEE
Q ss_conf             8899999999999659--98999973
Q gi|254780975|r   15 DFSRLGEEISNITKAG--AKQIHFDV   38 (224)
Q Consensus        15 d~~~l~~~i~~l~~~~--~d~iHiDI   38 (224)
                      +..++.+.+++..+.+  +|.+++|+
T Consensus        22 ~~~ev~~~~~~~r~~~iP~d~~~lD~   47 (317)
T cd06598          22 NWQEVDDTIKTLREKDFPLDAAILDL   47 (317)
T ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             89999999999997498950899956


No 488
>pfam01212 Beta_elim_lyase Beta-eliminating lyase.
Probab=45.30  E-value=24  Score=16.15  Aligned_cols=91  Identities=23%  Similarity=0.352  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHC-----CEEEEEEEE-C--CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-------HHHHHHH
Q ss_conf             447899886201-----402899830-6--776533220135778998654313865269815899-------8899999
Q gi|254780975|r  122 PVAILEDVIDEI-----DMILIMTVN-P--GFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVT-------SRNIKSL  186 (224)
Q Consensus       122 ~~~~i~~~l~~~-----D~vliM~V~-P--G~~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDGGvn-------~~~i~~l  186 (224)
                      .++.++..+..-     ..+-+.+++ |  ..+||.+-   ++.+++++++..++++.+.+||-==       ....+++
T Consensus       110 ~~~~l~~~i~~~~~~h~~~~~~v~le~t~n~~gG~~~~---~~el~~i~~~a~~~gl~lHmDGARl~nA~~a~~~~~~e~  186 (288)
T pfam01212       110 DLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVS---LEELREIRAIAREHGIPLHLDGARLANAAVALGVIVKEI  186 (288)
T ss_pred             CHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEECC---HHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCHHHH
T ss_conf             99999998764498546765479999554488966557---899999999999809937630878988887609998898


Q ss_pred             HHCCCCEEEE----------CHHHHCCCCHHHHHHHHHHH
Q ss_conf             9679989997----------42663789989999999999
Q gi|254780975|r  187 VQAGADLLVV----------GSSFFNQKGEISYAKRLNDL  216 (224)
Q Consensus       187 ~~~Gad~~V~----------Gsaif~~~d~~~~~~~l~~l  216 (224)
                      . .++|.+..          ||.|+.+++.++.++++++.
T Consensus       187 ~-~~~D~v~~~~sK~lga~~Gavl~g~~~~i~~a~~~rk~  225 (288)
T pfam01212       187 T-SYADSVSMSLSKGLGAPVGSVLAGSDDFIAYAIRQRKY  225 (288)
T ss_pred             H-CCCCEEEEEEECCCCCCEEEEEEECHHHHHHHHHHHHH
T ss_conf             5-46888999843578861003898289999999999999


No 489
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=45.23  E-value=24  Score=16.14  Aligned_cols=28  Identities=18%  Similarity=0.135  Sum_probs=13.4

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             7063258899999999999659989999
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHF   36 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHi   36 (224)
                      .|+.-.......+.+.++-++|++.+-+
T Consensus        68 ~svIfVPp~~a~dAi~EAi~agI~~iV~   95 (289)
T PRK05678         68 ASVIYVPPPFAADAILEAIDAGIDLIVC   95 (289)
T ss_pred             EEEEEECHHHHHHHHHHHHHCCCCEEEE
T ss_conf             6999707899999999998679988999


No 490
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit; InterPro: IPR012721    Members of this eukaryotic family are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT theta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=44.82  E-value=19  Score=16.74  Aligned_cols=22  Identities=41%  Similarity=0.662  Sum_probs=9.2

Q ss_pred             EECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf             815899889999996799899974
Q gi|254780975|r  174 VDGGVTSRNIKSLVQAGADLLVVG  197 (224)
Q Consensus       174 vDGGvn~~~i~~l~~~Gad~~V~G  197 (224)
                      ||=|||.  ++-|.+-+--.|+.|
T Consensus       395 iDDGVN~--~K~L~KD~GGrl~pG  416 (554)
T TIGR02346       395 IDDGVNV--IKALVKDNGGRLLPG  416 (554)
T ss_pred             HHCCHHH--HHEEECCCCCCEECC
T ss_conf             3043121--010005898615057


No 491
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=44.69  E-value=24  Score=16.09  Aligned_cols=184  Identities=14%  Similarity=0.205  Sum_probs=107.7

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCE--ECCCCCCCHHHHHHHHH--CCCCEEEEEEEEEECCHHHHHHCCC
Q ss_conf             7063258899999999999659989999734263--45843417899998641--2564168567885120336764047
Q gi|254780975|r    9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGC--FVPNISFGADVIRSLRS--YSDSVFDCHLMISSIDSHINIIADA   84 (224)
Q Consensus         9 pSil~~d~~~l~~~i~~l~~~~~d~iHiDImDg~--fvpn~~~~~~~i~~i~~--~t~~~~dvHLMv~~P~~~i~~~~~~   84 (224)
                      |++=+.|+..+.--++..++.+..-+ +-+-.|.  |.+.+-.-...++.+..  ..+.|+-+||==-.-...+....++
T Consensus        21 ~afNv~n~e~~~avi~AAee~~sPvI-lq~s~~~~~~~~g~~~~~~~~~~~~~~~~a~VPV~lHLDH~~~~e~~~~ai~~   99 (286)
T PRK08610         21 GQYNINNLEFTQAILEASQEENAPVI-LGVSEGAARYMSGFYTIVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDA   99 (286)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCEE-EEECCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHC
T ss_conf             98766989999999999999687999-99176688765768899999999999837998889989899999999999971


Q ss_pred             CCCEEEEECCCCC---C---HHHHHHHHHHCCCEE----EEEE--------E--CCCCHHHHHHHHHH--CCEEEEEEEE
Q ss_conf             7607999706642---1---589998677649825----9985--------2--33344789988620--1402899830
Q gi|254780975|r   85 GCDIITFHPESSP---H---IRRSLRTIHAMGKKT----GVAI--------N--PETPVAILEDVIDE--IDMILIMTVN  142 (224)
Q Consensus        85 g~d~i~~H~E~~~---~---~~~~i~~i~~~g~k~----Giai--------~--p~T~~~~i~~~l~~--~D~vliM~V~  142 (224)
                      |-+.|-|-.-..+   +   -.++.++++..|+.+    |-.=        .  -.|.++....+...  +|.+   .|-
T Consensus       100 GFtSVM~DgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~peea~~Fv~~TgvD~L---Ava  176 (286)
T PRK08610        100 GFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDAL---APA  176 (286)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE---EEE
T ss_conf             99989981998989999999999999998708826997521367567766754303799999999997398667---311


Q ss_pred             CCC-----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             677-----6533220135778998654313865269815--8998899999967998999742663
Q gi|254780975|r  143 PGF-----GGQQLIESTIPKIRQAKALIGKRSISLEVDG--GVTSRNIKSLVQAGADLLVVGSSFF  201 (224)
Q Consensus       143 PG~-----~Gq~f~~~~l~kI~~l~~~~~~~~~~I~vDG--Gvn~~~i~~l~~~Gad~~V~Gsaif  201 (224)
                      -|.     .|.+-+  -+++++++++.   .++++-.-|  |+..+.++++++.|+.-+-.|+-+.
T Consensus       177 iGt~HG~yk~~p~l--~~~~L~~I~~~---~~vPLVLHGgSGi~~e~i~~ai~~Gi~KvNi~T~l~  237 (286)
T PRK08610        177 LGSVHGPYKGEPKL--GFKEMEEIGLS---TGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQ  237 (286)
T ss_pred             CCCCCCCCCCCCCC--CHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHHCCCEEEEECCHHH
T ss_conf             15544655899877--89999999852---499979658999999999999985984899671889


No 492
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=44.57  E-value=24  Score=16.08  Aligned_cols=171  Identities=19%  Similarity=0.225  Sum_probs=76.1

Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCH--HHHHHCCCCCCE
Q ss_conf             632588999999999996599899997342634584341789999864125641685678851203--367640477607
Q gi|254780975|r   11 ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDS--HINIIADAGCDI   88 (224)
Q Consensus        11 il~~d~~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~~~~~~i~~i~~~t~~~~dvHLMv~~P~~--~i~~~~~~g~d~   88 (224)
                      +.|+...+.    +.+-++|++-+.+        -+-..++..++.+....+...++++||++|+.  .+..+.......
T Consensus        44 i~~atl~EA----e~~~~~G~~dIl~--------a~pi~~~~~l~rl~~l~~~~~~i~~~VDs~~~~~~l~~~a~~~~~~  111 (345)
T cd07376          44 VTVATLAEA----ETFAEAGVKDILM--------AYPLVGPAAIARLAGLLRQEAEFHVLVDSPEALAALAAFAAAHGVR  111 (345)
T ss_pred             EEEECHHHH----HHHHHCCCCCEEE--------ECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCE
T ss_conf             999469999----9999769983899--------6688998999999998634983899970899999999999865982


Q ss_pred             EEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEE--ECCCCCCC--------CCCHHHHHH
Q ss_conf             99970664215899986776498259985233344789988620140289983--06776533--------220135778
Q gi|254780975|r   89 ITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTV--NPGFGGQQ--------LIESTIPKI  158 (224)
Q Consensus        89 i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V--~PG~~Gq~--------f~~~~l~kI  158 (224)
                      +-+-.|-.           .-+-++|+.-....-+ .+...+...+.+-+-++  .+|.....        ...+....+
T Consensus       112 ~~V~ievD-----------~G~~R~Gv~~~~~~~l-~l~~~i~~~~~l~l~G~~~y~Gh~~~~~~~~~~~~~~~~~~~~~  179 (345)
T cd07376         112 LRVMLEVD-----------VGGHRSGVRPEEAAAL-ALADAVQASPGLRLAGVMAYEGHIYGAGGAREGAQARDQAVAAV  179 (345)
T ss_pred             EEEEEEEC-----------CCCCCCCCCCCHHHHH-HHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             78999978-----------8998588888779999-99999853999189899974712069999899999999999999


Q ss_pred             HHHHHHHHCCCCE-EEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf             9986543138652-69815899889999996799899974266378998
Q gi|254780975|r  159 RQAKALIGKRSIS-LEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGE  206 (224)
Q Consensus       159 ~~l~~~~~~~~~~-I~vDGGvn~~~i~~l~~~Gad~~V~Gsaif~~~d~  206 (224)
                      ++..+... .++. -.|=||=+..--......+.+-+-.||++|.+...
T Consensus       180 ~~~~~~~~-~g~~~~~vs~GgTpt~~~~~~~~~~tEl~~G~yvf~D~~~  227 (345)
T cd07376         180 RAAAAAAE-RGLACPTVSGGGTPTYQLTAGDRAVTELRAGSYVFMDTGF  227 (345)
T ss_pred             HHHHHHHH-CCCCCCEEECCCCCCCEEECCCCCCEEECCCEEEECCHHH
T ss_conf             99999986-4999888955788874103368873287463489642132


No 493
>PRK07534 methionine synthase I; Validated
Probab=44.02  E-value=25  Score=16.03  Aligned_cols=116  Identities=18%  Similarity=0.231  Sum_probs=53.7

Q ss_pred             HHHHCCCCCCEEEEECCCCCCHHH---HHHHHHHCCCE--EEEEEEC------CCCHHHHHHHHHHCCEE-EEEEEECCC
Q ss_conf             676404776079997066421589---99867764982--5998523------33447899886201402-899830677
Q gi|254780975|r   78 INIIADAGCDIITFHPESSPHIRR---SLRTIHAMGKK--TGVAINP------ETPVAILEDVIDEIDMI-LIMTVNPGF  145 (224)
Q Consensus        78 i~~~~~~g~d~i~~H~E~~~~~~~---~i~~i~~~g~k--~Giai~p------~T~~~~i~~~l~~~D~v-liM~V~PG~  145 (224)
                      ++.+.+.|+|.+.+  |+..++.+   .++.+++.+.-  +.+++.+      +++.+.+...+..+... +..++|=+.
T Consensus       137 ~~~L~~~gvDlil~--ETm~~i~E~~aa~~a~~~~~~P~~~~~s~~~~g~~~~G~~~~~~~~~~~~~~~~~~avGvNC~~  214 (335)
T PRK07534        137 AEGLKAGGADVLWV--ETISAPEEFRAAAEAAALAGMPWCGTMSFDTAGRTMMGLTPADLAGLVDKLPHPPLAFGANCGV  214 (335)
T ss_pred             HHHHHHCCCCEEEH--HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             99987369989955--9987499999999998855998899999828997489999999999999758973002000578


Q ss_pred             CCCCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCC--------HHHHHHHHHCCCCEEE
Q ss_conf             6533220135778998654----313865269815899--------8899999967998999
Q gi|254780975|r  146 GGQQLIESTIPKIRQAKAL----IGKRSISLEVDGGVT--------SRNIKSLVQAGADLLV  195 (224)
Q Consensus       146 ~Gq~f~~~~l~kI~~l~~~----~~~~~~~I~vDGGvn--------~~~i~~l~~~Gad~~V  195 (224)
                      +........+...+.....    +++.++.-.+||...        .+....+.+.||+++=
T Consensus       215 ~~~~~~~~~l~~~~~~~~~p~~~~pNaG~p~~~~~~~~~~~tpe~f~~~~~~w~~~Ga~IIG  276 (335)
T PRK07534        215 GASDLLRTVLGFAAQGPERPIIAKGNAGIPKYVDGHIHYDGTPELMAEYAVLARDAGARIIG  276 (335)
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             88999999999998489971898789999875799404379999999999999987981998


No 494
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating; InterPro: IPR006113   6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket .    This model does not specify whether the cofactor is NADP only, NAD only, or both.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt.
Probab=43.31  E-value=26  Score=15.96  Aligned_cols=120  Identities=17%  Similarity=0.219  Sum_probs=78.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHH--HHHHHHHHHHH
Q ss_conf             7999706642158999867764982599852333447899886201402899830677653322013--57789986543
Q gi|254780975|r   88 IITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIEST--IPKIRQAKALI  165 (224)
Q Consensus        88 ~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~~~D~vliM~V~PG~~Gq~f~~~~--l~kI~~l~~~~  165 (224)
                      .|++|=-+.+..++++   ++  -..|=.|.+.++++++...|+.-=.|++|- ..|..       +  =.-|.+|.-++
T Consensus        24 ~V~VyNRt~~Ktd~fl---~~--~~~gk~i~g~~~ieeFV~~Le~PRKImLMV-kAG~p-------VdaD~~I~~L~P~L   90 (480)
T TIGR00873        24 TVAVYNRTPEKTDEFL---KE--RAKGKKIVGAYSIEEFVQSLERPRKIMLMV-KAGAP-------VDADAVINSLLPLL   90 (480)
T ss_pred             CEEEEECCHHHHHHHH---HC--CCCCCCCCCCCCHHHHHHHCCCCCEEEEEE-ECCCC-------CCHHHHHHHHHHHC
T ss_conf             2799726847999998---60--378885334326799998506887288877-53885-------37789999964435


Q ss_pred             HCCCCEEEEECCCC-----HHHHHHHHHCCCCEE---EEC---HHHHCCC----CHHHHHHHHHHHHHHHHH
Q ss_conf             13865269815899-----889999996799899---974---2663789----989999999999997862
Q gi|254780975|r  166 GKRSISLEVDGGVT-----SRNIKSLVQAGADLL---VVG---SSFFNQK----GEISYAKRLNDLKKSALA  222 (224)
Q Consensus       166 ~~~~~~I~vDGGvn-----~~~i~~l~~~Gad~~---V~G---saif~~~----d~~~~~~~l~~l~~~a~a  222 (224)
                      ++  -+|-+|||=+     ....++|.+.|...+   |+|   +|+++=.    -..++++.+..+.++-+|
T Consensus        91 E~--GDiIIDGGNS~Y~DT~RR~~eL~~~Gi~FvG~GvSGGEeGAl~GPSiMPGG~~~Ay~~~~PIl~~IAA  160 (480)
T TIGR00873        91 EK--GDIIIDGGNSHYKDTERRYKELKAKGILFVGVGVSGGEEGALKGPSIMPGGSAEAYPLVAPILQKIAA  160 (480)
T ss_pred             CC--CCEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             89--98887588788466578999998649816730132453021378877888798789999678876554


No 495
>PRK05660 coproporphyrinogen III oxidase; Provisional
Probab=43.07  E-value=26  Score=15.93  Aligned_cols=122  Identities=16%  Similarity=0.216  Sum_probs=65.8

Q ss_pred             HHHHHHCCCCCCEEEEECCCCC--------------CHHHHHHHHHHCCCE-EEEEEE---CCCCHHHHHHHHHH-----
Q ss_conf             3367640477607999706642--------------158999867764982-599852---33344789988620-----
Q gi|254780975|r   76 SHINIIADAGCDIITFHPESSP--------------HIRRSLRTIHAMGKK-TGVAIN---PETPVAILEDVIDE-----  132 (224)
Q Consensus        76 ~~i~~~~~~g~d~i~~H~E~~~--------------~~~~~i~~i~~~g~k-~Giai~---p~T~~~~i~~~l~~-----  132 (224)
                      ..+..+.++|++++++=..+.+              +..+.++.+++.|.. +.+-+-   |+..++.+..-+..     
T Consensus       108 ~~l~~l~~~GvnRiSiGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~gf~~iniDLiyGlP~Qt~~~~~~~l~~~~~l~  187 (378)
T PRK05660        108 DRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGAGLRSFNLDLMHGLPDQSLEEALDDLRQAIALN  187 (378)
T ss_pred             HHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             89999998098759996143789999982799999999999999997699606542326899988999999999986449


Q ss_pred             CCEEEE--EEEECCC--CCCCC-CC---HHHHHHHHHHHHHHCCCCE-EEE-----ECCCCHHHHHHHHHCCCCEEEEC-
Q ss_conf             140289--9830677--65332-20---1357789986543138652-698-----15899889999996799899974-
Q gi|254780975|r  133 IDMILI--MTVNPGF--GGQQL-IE---STIPKIRQAKALIGKRSIS-LEV-----DGGVTSRNIKSLVQAGADLLVVG-  197 (224)
Q Consensus       133 ~D~vli--M~V~PG~--~Gq~f-~~---~~l~kI~~l~~~~~~~~~~-I~v-----DGGvn~~~i~~l~~~Gad~~V~G-  197 (224)
                      .|.|-+  ++++||.  ..++. .|   ...+.-....+.+.+.++. .++     .|--...|..-.  .+.|.+-.| 
T Consensus       188 p~his~Y~L~~e~~T~~~~~~~~lp~~~~~~~my~~~~~~L~~~Gy~~yeisnFAk~g~~~~HN~~YW--~~~dylGiG~  265 (378)
T PRK05660        188 PPHLSWYQLTIEPNTVFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYW--RFGDYLGIGC  265 (378)
T ss_pred             CCCEEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCC--CCCCEEEECC
T ss_conf             88057888886589737646766998589999999999999977998786127778870222011105--7998089815


Q ss_pred             HH
Q ss_conf             26
Q gi|254780975|r  198 SS  199 (224)
Q Consensus       198 sa  199 (224)
                      ||
T Consensus       266 gA  267 (378)
T PRK05660        266 GA  267 (378)
T ss_pred             CC
T ss_conf             81


No 496
>pfam12617 LdpA_C Iron-Sulfur binding protein C terminal. This domain family is found in bacteria and eukaryotes, and is typically between 179 and 201 amino acids in length. The family is found in association with pfam00037. LdpA (light-dependent period) plays a role in controlling the redox state in cyanobacteria to modulate its. circadian clock. LdpA is a protein with Iron-Sulfur cluster-binding motifs.
Probab=42.87  E-value=26  Score=15.91  Aligned_cols=110  Identities=17%  Similarity=0.259  Sum_probs=60.1

Q ss_pred             HHCCCCCCEEEEECCCCC--CHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHHH-------CCEEEEEEEE--CCCCC
Q ss_conf             640477607999706642--158999867764982-59985233344789988620-------1402899830--67765
Q gi|254780975|r   80 IIADAGCDIITFHPESSP--HIRRSLRTIHAMGKK-TGVAINPETPVAILEDVIDE-------IDMILIMTVN--PGFGG  147 (224)
Q Consensus        80 ~~~~~g~d~i~~H~E~~~--~~~~~i~~i~~~g~k-~Giai~p~T~~~~i~~~l~~-------~D~vliM~V~--PG~~G  147 (224)
                      .+.+.|+|-|-+|.....  ...+..+.++..+.+ --+|+++.-.-+.+..|+..       ...-++--.+  | -||
T Consensus         2 ll~~~~~dAIEIHT~vgr~~~F~~lw~~l~~~~~~Lk~iaiSc~~~~~~l~~~L~~~~~~l~~~~~~lIWQ~DGRP-MSG   80 (182)
T pfam12617         2 LLLSLGPDAIEIHTQVGRLAAFERLWQALAPSVPQLKLLAISCPDEGEGLIEYLWQLYEILRPLPCRLIWQLDGRP-MSG   80 (182)
T ss_pred             CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCC
T ss_conf             4322699889871788854799999999874347621157656988279999999999997406998079548903-778


Q ss_pred             CCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHCC
Q ss_conf             332201357789986543138-6526981589988999999679
Q gi|254780975|r  148 QQLIESTIPKIRQAKALIGKR-SISLEVDGGVTSRNIKSLVQAG  190 (224)
Q Consensus       148 q~f~~~~l~kI~~l~~~~~~~-~~~I~vDGGvn~~~i~~l~~~G  190 (224)
                      --=.-.+..-|+-..++.... ...++.-||-|..|+..+...|
T Consensus        81 Dig~gTt~~aV~l~~~v~~~~pPG~vQLAGGTN~~Tv~~Lk~~g  124 (182)
T pfam12617        81 DIGDGTTRAAVKLAQKVLSAKPPGPVQLAGGTNAHTVEKLKQLG  124 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCC
T ss_conf             87886099999999998740799717843676377899999716


No 497
>PRK05586 biotin carboxylase; Validated
Probab=42.70  E-value=26  Score=15.90  Aligned_cols=79  Identities=15%  Similarity=0.231  Sum_probs=40.2

Q ss_pred             EEEECCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCC-----CHHHHHHHHHHCCEEEEEEEECC
Q ss_conf             8851203367640477607999706642158999867764982599852333-----44789988620140289983067
Q gi|254780975|r   70 MISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPET-----PVAILEDVIDEIDMILIMTVNPG  144 (224)
Q Consensus        70 Mv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T-----~~~~i~~~l~~~D~vliM~V~PG  144 (224)
                      +.+|| .+.+.+.++|...|--..|+....-+-+ ..|+.=.++|+-+-|++     +.+........+.|=+++----|
T Consensus        85 LSEna-~Fa~~~~~~Gi~fIGP~~~~i~~~GdK~-~ar~~a~~~gvPv~pg~~~~v~~~~ea~~~a~~iGyPv~lKAa~G  162 (447)
T PRK05586         85 LSENS-KFAKMCKECNIVFIGPDSETIELMGNKS-NAREIMKKAGVPVVPGSEGEIENEEEALKIAEEIGYPVMVKASAG  162 (447)
T ss_pred             HHCCH-HHHHHHHHCCCEEECCCHHHHHHHCCHH-HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf             22389-9999999879879895999999853849-999999984997656868888999999999986298237630569


Q ss_pred             CCCCCC
Q ss_conf             765332
Q gi|254780975|r  145 FGGQQL  150 (224)
Q Consensus       145 ~~Gq~f  150 (224)
                      -+|...
T Consensus       163 GGGrGm  168 (447)
T PRK05586        163 GGGRGI  168 (447)
T ss_pred             CCCCEE
T ss_conf             997736


No 498
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=42.34  E-value=26  Score=15.86  Aligned_cols=13  Identities=15%  Similarity=0.153  Sum_probs=4.8

Q ss_pred             CCCCEEEEECCCC
Q ss_conf             7760799970664
Q gi|254780975|r   84 AGCDIITFHPESS   96 (224)
Q Consensus        84 ~g~d~i~~H~E~~   96 (224)
                      +|...|..=.|..
T Consensus       103 agI~liV~ITEgI  115 (309)
T PTZ00187        103 AEIPLVVVITEGI  115 (309)
T ss_pred             CCCCEEEEECCCC
T ss_conf             7998799933898


No 499
>TIGR02635 RhaI_grampos L-rhamnose isomerase; InterPro: IPR013457    The proteins in this entry are closely related to the L-rhamnose isomerases (IPR013451 from INTERPRO) found in Pseudomonas stutzeri  and in a number of the Rhizobiales. They are encoded in similar genomic contexts, close to genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (IPR013454 from INTERPRO), sugar kinases, and sugar transporters..
Probab=42.27  E-value=15  Score=17.53  Aligned_cols=103  Identities=19%  Similarity=0.266  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCEECCCCC-C---CHHHHHHHHH-CCCCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf             99999999999659989999734263458434-1---7899998641-25641685678851203367640477607999
Q gi|254780975|r   17 SRLGEEISNITKAGAKQIHFDVMDGCFVPNIS-F---GADVIRSLRS-YSDSVFDCHLMISSIDSHINIIADAGCDIITF   91 (224)
Q Consensus        17 ~~l~~~i~~l~~~~~d~iHiDImDg~fvpn~~-~---~~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~   91 (224)
                      .|+-+=++..++.|..-|-+=..||+==|... |   -..+-+.|+. |..++=|--|.++.  ||++.-.        .
T Consensus       116 ~h~LeCvdIa~~tGSkdisLWLADGTnYPGQdD~R~Rk~RL~EsL~~vY~~l~~dmRlLiEY--KFFEPAf--------Y  185 (382)
T TIGR02635       116 DHLLECVDIAKKTGSKDISLWLADGTNYPGQDDIRKRKDRLEESLAEVYEHLGDDMRLLIEY--KFFEPAF--------Y  185 (382)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--ECCCCCC--------C
T ss_conf             99998999998608852562210578735887754478899888999985169887785322--0457534--------4


Q ss_pred             ECCCCCCHHHHHHHHHHCCCEEEEEEE-----CCCCHHHHHHHH
Q ss_conf             706642158999867764982599852-----333447899886
Q gi|254780975|r   92 HPESSPHIRRSLRTIHAMGKKTGVAIN-----PETPVAILEDVI  130 (224)
Q Consensus        92 H~E~~~~~~~~i~~i~~~g~k~Giai~-----p~T~~~~i~~~l  130 (224)
                      |. =.+|.--.....+++|-|+-+.+.     |+|.+|.|.-+|
T Consensus       186 ~T-D~pDWGtAY~~~~kLG~rA~VlVD~GHHa~GTNIE~IVA~L  228 (382)
T TIGR02635       186 HT-DIPDWGTAYALSKKLGDRALVLVDTGHHAQGTNIEFIVATL  228 (382)
T ss_pred             CC-CCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHH
T ss_conf             57-83335799999985489238986257798777489999988


No 500
>PRK08223 hypothetical protein; Validated
Probab=42.22  E-value=27  Score=15.85  Aligned_cols=29  Identities=10%  Similarity=0.112  Sum_probs=12.1

Q ss_pred             CCCEEEEEEEEEECCHHHHHHCCCCCCEEEE
Q ss_conf             5641685678851203367640477607999
Q gi|254780975|r   61 SDSVFDCHLMISSIDSHINIIADAGCDIITF   91 (224)
Q Consensus        61 t~~~~dvHLMv~~P~~~i~~~~~~g~d~i~~   91 (224)
                      +...+++|=---++++ ++.+.+ |+|.|.=
T Consensus        95 P~v~V~~~~~~lt~~N-~~~~l~-~~DvVvD  123 (287)
T PRK08223         95 PELEIRAFPEGIGKEN-LDTFLD-GVDVYVD  123 (287)
T ss_pred             CCCEEEEECCCCCHHH-HHHHHH-CCCEEEE
T ss_conf             8987999587899899-999986-7999997


Done!