HHsearch alignment for GI: 254780975 and conserved domain: pfam03060
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=98.08 E-value=0.00024 Score=48.10 Aligned_cols=124 Identities=16% Similarity=0.271 Sum_probs=92.0
Q ss_pred CCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HCCEEEEEEEECC-CCCCCCC
Q ss_conf 2033676404776079997066421589998677649825998523334478998862-0140289983067-7653322
Q gi|254780975|r 74 IDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVID-EIDMILIMTVNPG-FGGQQLI 151 (224)
Q Consensus 74 P~~~i~~~~~~g~d~i~~H~E~~~~~~~~i~~i~~~g~k~Giai~p~T~~~~i~~~l~-~~D~vliM~V~PG-~~Gq~f~ 151 (224)
T Consensus 103 ~~~~~~~~~~~~~~~v~~~~G~p~--~~~v~~~~~~G~~v~~~v---~s~~~A~~a~~~G~D~iV~qG~eAGGH~G~~~~ 177 (330)
T pfam03060 103 YGDDDDSLKDAKPKVVSFGFGLPP--EDVIERLKESGTKVIPTV---SSAKEARKAEAAGADAVVAQGPEAGGHRGTEVG 177 (330)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCH--HHHHHHHHHCCCEEEEEC---CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf 799999999749999998998982--799999998799899981---899999999981999899966766777888777
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECHHHHCCCC
Q ss_conf 013577899865431386526981589-988999999679989997426637899
Q gi|254780975|r 152 ESTIPKIRQAKALIGKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSFFNQKG 205 (224)
Q Consensus 152 ~~~l~kI~~l~~~~~~~~~~I~vDGGv-n~~~i~~l~~~Gad~~V~Gsaif~~~d 205 (224)
T Consensus 178 ~~~~~L~~~v~~~~---~iPvIaAGGI~dg~~iaaalalGA~gV~mGTrFlat~E 229 (330)
T pfam03060 178 TGTFLLVPTVVDAV---DIPVIAAGGIADGRGIAAALALGAEGVQIGTRFLATKE 229 (330)
T ss_pred CCHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEECCEEEECCC
T ss_conf 30777789999871---69778526628999999999679989997130011577