RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate
3-epimerase protein [Candidatus Liberibacter asiaticus str. psy62]
(224 letters)
>gnl|CDD|73366 cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme
catalyses the interconversion of D-ribulose 5-phosphate
(Ru5P) into D-xylulose 5-phosphate, as part of the
Calvin cycle (reductive pentose phosphate pathway) in
chloroplasts and in the oxidative pentose phosphate
pathway. In the Calvin cycle Ru5P is phosphorylated by
phosphoribulose kinase to ribulose-1,5-bisphosphate,
which in turn is used by RubisCO
(ribulose-1,5-bisphosphate carboxylase/oxygenase) to
incorporate CO2 as the central step in carbohydrate
synthesis..
Length = 211
Score = 267 bits (684), Expect = 2e-72
Identities = 100/214 (46%), Positives = 148/214 (69%), Gaps = 5/214 (2%)
Query: 6 QIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF 65
+I PSIL+ADF+ LGEE+ + +AGA IH DVMDG FVPN++FG V+++LR ++D
Sbjct: 1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPL 60
Query: 66 DCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAI 125
D HLM+ + + +I A AG DIITFH E++ H+ R+++ I +G K GVA+NP TPV +
Sbjct: 61 DVHLMVENPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEV 120
Query: 126 LEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKR--SISLEVDGGVTSRNI 183
LE +DE+D++L+M+VNPGFGGQ+ I + KIR+ + LI + ++ +EVDGG+ I
Sbjct: 121 LEPYLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETI 180
Query: 184 KSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLK 217
L +AGAD+LV GS+ F YA+ + +L+
Sbjct: 181 PLLAEAGADVLVAGSALFGSD---DYAEAIKELR 211
>gnl|CDD|30385 COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate
transport and metabolism].
Length = 220
Score = 261 bits (669), Expect = 9e-71
Identities = 103/220 (46%), Positives = 146/220 (66%), Gaps = 4/220 (1%)
Query: 4 SIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDS 63
++I PSIL+ADF+RLGEE+ + AGA IH DVMDG FVPNI+FG V+++LR +D
Sbjct: 3 MMKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDL 62
Query: 64 VFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPV 123
D HLM+ + D +I A AG DIITFH E++ HI R+++ I +G K G+ +NP TP+
Sbjct: 63 PLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPL 122
Query: 124 AILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKR-SISLEVDGGVTSRN 182
LE V+D++D++L+M+VNPGFGGQ+ I + KIR+ +A+I +R I +EVDGG+
Sbjct: 123 EALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLET 182
Query: 183 IKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSALA 222
IK L AGAD+ V GS+ F Y + +L+ L
Sbjct: 183 IKQLAAAGADVFVAGSALFGAD---DYKATIRELRGELLK 219
>gnl|CDD|144433 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family.
This enzyme catalyses the conversion of D-ribulose
5-phosphate into D-xylulose 5-phosphate.
Length = 201
Score = 238 bits (609), Expect = 1e-63
Identities = 93/200 (46%), Positives = 132/200 (66%), Gaps = 2/200 (1%)
Query: 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD 66
I PS+L+ADF+ LGEEI + AGA +H DVMDG FVPN++ G V+ +LR ++ D
Sbjct: 2 IAPSLLSADFAHLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTELPLD 61
Query: 67 CHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAIL 126
HLM+ D I A+AG DII+FH E+S H R+++ I G K G+ +NP TP+ +
Sbjct: 62 VHLMVEEPDRIIPDFAEAGADIISFHAEASDHPHRTIQLIKEAGAKAGLVLNPATPLDAI 121
Query: 127 EDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI--GKRSISLEVDGGVTSRNIK 184
E ++D++D++L+M+VNPGFGGQ I S +PKIR+ + +I G +EVDGGV NI
Sbjct: 122 EYLLDDLDLVLLMSVNPGFGGQSFIPSVLPKIRKVRKMIDEGGLDTLIEVDGGVNLDNIP 181
Query: 185 SLVQAGADLLVVGSSFFNQK 204
+ +AGAD+LV GS+ F
Sbjct: 182 QIAEAGADVLVAGSAVFGAP 201
>gnl|CDD|38321 KOG3111, KOG3111, KOG3111, D-ribulose-5-phosphate 3-epimerase
[Carbohydrate transport and metabolism].
Length = 224
Score = 199 bits (508), Expect = 5e-52
Identities = 85/221 (38%), Positives = 127/221 (57%), Gaps = 7/221 (3%)
Query: 1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY 60
M +I PSIL++DF+ L E + AGA +H DVMDG FVPNI+FG V+ SLR +
Sbjct: 1 MMVKPKIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKH 60
Query: 61 --SDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAIN 118
+D FD H+M+ + + ++ +A AG + TFH E++ + I G K G+A+
Sbjct: 61 TGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALK 120
Query: 119 PETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGV 178
P TPV LE + + +DM+L+MTV PGFGGQ+ +E +PK+ + I EVDGGV
Sbjct: 121 PGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDI--EVDGGV 178
Query: 179 TSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKS 219
I +AGA+++V GS+ F + ++ L+ S
Sbjct: 179 GPSTIDKAAEAGANMIVAGSAVFGAA---DPSDVISLLRNS 216
>gnl|CDD|73384 cd04722, TIM_phosphate_binding, TIM barrel proteins share a
structurally conserved phosphate binding motif and in
general share an eight beta/alpha closed barrel
structure. Specific for this family is the conserved
phosphate binding site at the edges of strands 7 and 8.
The phosphate comes either from the substrate, as in the
case of inosine monophosphate dehydrogenase (IMPDH), or
from ribulose-5-phosphate 3-epimerase (RPE) or from
cofactors, like FMN..
Length = 200
Score = 47.2 bits (111), Expect = 4e-06
Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 13/191 (6%)
Query: 18 RLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLMISSIDSH 77
E +AGA I + +V++ + + +D L I+ +
Sbjct: 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAA 72
Query: 78 INIIAD----AGCDIITFHPESSPHIRRSLRTI-----HAMGKKTGVAINPETPVAILED 128
++I A AG D + H R L I K V ++P +A
Sbjct: 73 VDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAA 132
Query: 129 VIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLV 187
+D + + G GG+ + + AK + + GG+ + +
Sbjct: 133 EEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR---GSKVPVIAGGGINDPEDAAEAL 189
Query: 188 QAGADLLVVGS 198
GAD ++VGS
Sbjct: 190 ALGADGVIVGS 200
>gnl|CDD|30618 COG0269, SgbH, 3-hexulose-6-phosphate synthase and related proteins
[Carbohydrate transport and metabolism].
Length = 217
Score = 36.7 bits (85), Expect = 0.006
Identities = 33/178 (18%), Positives = 74/178 (41%), Gaps = 16/178 (8%)
Query: 47 ISFGADVIRSLRS-YSDSVFDCHLMISSI-DSHINIIADAGCDIITF----HPESSPHIR 100
+ G +R+LR + D + L + + +AG D +T + I+
Sbjct: 40 KAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAADDAT---IK 96
Query: 101 RSLRTIHAMGKKTGV-AINPETPVAILEDVID-EIDMILIMT-VNPGFGGQQLIESTIPK 157
++++ GK+ + I P + + + +D +++ + G+ E + K
Sbjct: 97 KAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEK 156
Query: 158 IRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND 215
I++ L K +++ GG+T +I GAD+++VG + K A++ +
Sbjct: 157 IKKLSDLGAKVAVA----GGITPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKE 210
>gnl|CDD|73388 cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate decarboxylase
(KGPDC) and D-arabino-3-hexulose-6-phosphate synthase
(HPS). KGPDC catalyzes the formation of L-xylulose
5-phosphate and carbon dioxide from 3-keto-L-gulonate
6-phosphate as part of the anaerobic pathway for
L-ascorbate utilization in some eubacteria. HPS
catalyzes the formation of
D-arabino-3-hexulose-6-phosphate from D-ribulose
5-phosphate and formaldehyde in microorganisms that can
use formaldehyde as a carbon source. Both catalyze
reactions that involve the Mg2+-assisted formation and
stabilization of 1,2-enediolate reaction intermediates..
Length = 202
Score = 35.5 bits (82), Expect = 0.012
Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 13/173 (7%)
Query: 47 ISFGADVIRSLRS-YSDSVFDCHLMISSIDSHI-NIIADAGCDIIT---FHPESSPHIRR 101
S G + +R+LR + D + L + + + AG DI+T P S+ I++
Sbjct: 37 KSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLST--IKK 94
Query: 102 SLRTIHAMGKKTGV-AINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQ 160
+++ GK+ V I E P + + +D++++ G Q
Sbjct: 95 AVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHR---GIDAQAAGGWWP--EDD 149
Query: 161 AKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL 213
K + + + V GG+T + +AGAD+++VG + A+
Sbjct: 150 LKKVKKLLGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAAREF 202
>gnl|CDD|29612 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II;
This family contains two enzymes that play an important
role in NAD production by either allowing quinolinic
acid (QA) , quinolinate phosphoribosyl transferase
(QAPRTase), or nicotinic acid (NA), nicotinate
phosphoribosyltransferase (NAPRTase), to be used in the
synthesis of NAD. QAPRTase catalyses the reaction of
quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide, an important step in
the de novo synthesis of NAD. NAPRTase catalyses a
similar reaction leading to NAMN and pyrophosphate,
using nicotinic acid an PPRP as substrates, used in the
NAD salvage pathway..
Length = 281
Score = 34.1 bits (78), Expect = 0.027
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 157 KIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204
K R G + +E GG+ NI++ + G D+ VG+ +
Sbjct: 227 KARAHLDGKGLPRVKIEASGGLDEENIRAYAETGVDVFGVGTLLHSAP 274
>gnl|CDD|30632 COG0284, PyrF, Orotidine-5'-phosphate decarboxylase [Nucleotide
transport and metabolism].
Length = 240
Score = 33.8 bits (77), Expect = 0.040
Identities = 39/185 (21%), Positives = 65/185 (35%), Gaps = 18/185 (9%)
Query: 47 ISFGADVIRSLRSYSDSVFDCHLMISSIDS----HINIIADAGCDIITFHPESSPHIRRS 102
FGAD++ L++ VF L ++ I + AD G D +T H + R+
Sbjct: 48 AFFGADILEELKARGKKVF-LDLKLADIPNTVALAAKAAADLGADAVTVHAFGGFDMLRA 106
Query: 103 L-RTIHAMGKKT-GVAINPET------PVAILEDVIDEIDMILIMTVNPGFGGQQLIEST 154
+ A G V + I + +++ + + G G
Sbjct: 107 AKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAEE 166
Query: 155 IPKIRQA---KALIGKRSISLEVDGGVTSR--NIKSLVQAGADLLVVGSSFFNQKGEISY 209
+ IR+ LI I GG R V+AGAD +VVG ++
Sbjct: 167 VAAIREILGPDFLILTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRPITQAGDPVAA 226
Query: 210 AKRLN 214
A+ +
Sbjct: 227 ARAIA 231
>gnl|CDD|29615 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other..
Length = 269
Score = 33.2 bits (76), Expect = 0.067
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 154 TIPKIRQAKALI-GKRSISLEVDGGVTSRNIKSLVQAGADLLVVGS 198
+ ++++A L+ G + LE GG+T NI++ + G D++ G+
Sbjct: 211 SPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAETGVDVISTGA 256
>gnl|CDD|30959 COG0614, FepB, ABC-type Fe3+-hydroxamate transport system,
periplasmic component [Inorganic ion transport and
metabolism].
Length = 319
Score = 32.5 bits (73), Expect = 0.082
Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 9/136 (6%)
Query: 70 MISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTI-HAMGKKTGVAINPETPVAILED 128
+ + + ++ + C + SS RT+ A+G+ + PE V++
Sbjct: 2 IKLILLLLLLLLLLSACASNSSSAVSSSSASAEARTVTDALGRTVTIPAPPERIVSLGPS 61
Query: 129 VIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQ 188
+ + + + V S PK+ + + G T N++ +V
Sbjct: 62 ATEILLALGVKPVGVADSVGVSYYSYYPKLPKLLKVPT--------VGVGTDPNLEKIVA 113
Query: 189 AGADLLVVGSSFFNQK 204
DL++ SS +
Sbjct: 114 LKPDLIIASSSSQDDL 129
>gnl|CDD|29619 cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase
or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other..
Length = 268
Score = 32.8 bits (75), Expect = 0.083
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 154 TIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGS 198
+ ++R+A AL+ R + LE GG+T NI++ + G D + VG+
Sbjct: 212 SPEELREAVALLKGRVL-LEASGGITLENIRAYAETGVDYISVGA 255
>gnl|CDD|32291 COG2108, COG2108, Uncharacterized conserved protein related to
pyruvate formate-lyase activating enzyme [General
function prediction only].
Length = 353
Score = 31.8 bits (72), Expect = 0.16
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 52 DVIRSLRSYSDSVFDCHLMISSI---DSHINIIADAGCDIITFHPESSPHIRRSLRTIHA 108
+ IR L+ F HL + I + + +A+AG D I FHP P + S + I
Sbjct: 98 EYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHP-PRPGSKSSEKYIEN 156
Query: 109 MG--KKTGVAINPETP-VAILEDVIDEI 133
+ KK G+ + E P + E+ I E
Sbjct: 157 LKIAKKYGMDVGVEIPAIPGEEEAILEF 184
Score = 27.2 bits (60), Expect = 3.9
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 120 ETPVAILEDVIDEIDM-----ILIMTVNPGFGGQQLIESTIPKIRQAKALIGKR-SISLE 173
E PV +ED+I+E + I +P IE T+ IR K G+ I L
Sbjct: 61 ERPVKSVEDIIEEAKLMDALGASITGGDP----LLEIERTVEYIRLLKDEFGEDFHIHLY 116
Query: 174 VDG-GVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKS 219
G T +K+L +AG D + K Y + L KK
Sbjct: 117 TTGILATEEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKY 163
>gnl|CDD|73367 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP
synthase)/TenI. TMP synthase catalyzes an important step
in the thiamine biosynthesis pathway, the substitution
of the pyrophosphate of 2-methyl-4-amino-5-
hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-
(beta-hydroxyethyl) thiazole phosphate to yield thiamine
phosphate. TenI is a enzymatically inactive regulatory
protein involved in the regulation of several
extracellular enzymes. This superfamily also contains
other enzymatically inactive proteins with unknown
functions..
Length = 196
Score = 31.7 bits (72), Expect = 0.17
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 157 KIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLND 215
+R+ L+ +++ GG+T N ++ AGAD + V S+ + A+ L
Sbjct: 141 LLREIAELVEIPVVAI---GGITPENAAEVLAAGADGVAVISAITGADDPAAAARELLA 196
>gnl|CDD|30506 COG0157, NadC, Nicotinate-nucleotide pyrophosphorylase [Coenzyme
metabolism].
Length = 280
Score = 30.2 bits (68), Expect = 0.51
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 154 TIPKIRQAKALIGKR-SISLEVDGGVTSRNIKSLVQAGADLLVVGS 198
+ ++++A L+G LE GG+T NI+ + G D++ VG+
Sbjct: 218 SPEELKEAVKLLGLAGRALLEASGGITLENIREYAETGVDVISVGA 263
>gnl|CDD|144535 pfam00977, His_biosynth, Histidine biosynthesis protein. Proteins
involved in steps 4 and 6 of the histidine biosynthesis
pathway are contained in this family. Histidine is
formed by several complex and distinct biochemical
reactions catalysed by eight enzymes. The enzymes in
this Pfam entry are called His6 and His7 in eukaryotes
and HisA and HisF in prokaryotes. The structure of HisA
is known to be a TIM barrel fold. In some archaeal HisA
proteins the TIM barrel is composed of two tandem
repeats of a half barrel. This family belong to the
common phosphate binding site TIM barrel family.
Length = 229
Score = 29.8 bits (68), Expect = 0.61
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 162 KALIGKRSISLEVDGGVTSRN-IKSLVQAGADLLVVGSS 199
+ + + I ++V GG+ S + L+ AGAD +++G++
Sbjct: 66 EEIAEEVFIPVQVGGGIRSLEDAERLLSAGADKVIIGTA 104
>gnl|CDD|29618 cd01571, NAPRTase_B, Nicotinate phosphoribosyltransferase
(NAPRTase), subgroup B. Nicotinate
phosphoribosyltransferase catalyses the formation of
NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
(PRPP) and nicotinic acid, this is the first, and also
rate limiting, reaction in the NAD salvage synthesis.
This salvage pathway serves to recycle NAD degradation
products..
Length = 302
Score = 29.4 bits (66), Expect = 0.92
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 155 IPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSF 200
I ++R A + G + + + V GG+ +IK L G D VG++
Sbjct: 231 IREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVGVDAFGVGTAI 276
>gnl|CDD|73394 cd04732, HisA, HisA. Phosphoribosylformimino-5-aminoimidazole
carboxamide ribonucleotide (ProFAR) isomerase catalyzes
the fourth step in histidine biosynthesis, an
isomerisation of the aminoaldose moiety of ProFAR to the
aminoketose of PRFAR
(N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-
phospho-ribosyl)-4-imidazolecarboxamide). In bacteria
and archaea, ProFAR isomerase is encoded by the HisA
gene..
Length = 234
Score = 29.3 bits (66), Expect = 0.94
Identities = 18/117 (15%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 110 GKKTGVAINPETPVAILEDVIDE-IDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKR 168
G + + PV + + + + ++ ++ GG+ + I +I +A
Sbjct: 19 GDYDKKTVYSDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAV------ 72
Query: 169 SISLEVDGGVTSRN-IKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSALAID 224
I ++V GG+ S I+ L+ G +++G++ + + ++ + +D
Sbjct: 73 GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLD 129
>gnl|CDD|29620 cd01573, modD_like, ModD; Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase) present in some modABC operons in
bacteria, which are involved in molybdate transport. In
general, QPRTases are part of the de novo synthesis
pathway of NAD in both prokaryotes and eukaryotes. They
catalyse the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide..
Length = 272
Score = 28.7 bits (64), Expect = 1.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 169 SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFF 201
+ L GG+ N + AGAD+LV + ++
Sbjct: 230 PVLLAAAGGINIENAAAYAAAGADILVTSAPYY 262
>gnl|CDD|39719 KOG4519, KOG4519, KOG4519, Phosphomevalonate kinase [Lipid
transport and metabolism].
Length = 459
Score = 28.5 bits (63), Expect = 1.4
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 83 DAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVN 142
II E+ + R R + + ++ V I PE+ +L+ ++ +L+ V
Sbjct: 346 TINEAIIKELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDS-TMSLEGVLLAGV- 403
Query: 143 PGFGG 147
PG GG
Sbjct: 404 PGAGG 408
>gnl|CDD|73392 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the
nitroalkane oxidizing enzyme families, catalyzes
oxidative denitrification of nitroalkanes to their
corresponding carbonyl compounds and nitrites. NDP is a
member of the NAD(P)H-dependent flavin oxidoreductase
family that reduce a range of alternative electron
acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as
electron donor. Some contain 4Fe-4S cluster to transfer
electron from FAD to FMN..
Length = 236
Score = 28.6 bits (64), Expect = 1.5
Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 21/156 (13%)
Query: 54 IRSLRSYSDSVFDCHLMISS----IDSHINIIADAGCDIITFH-PESSPHIRRSLRTIHA 108
IR +R+ +D F +L++ S ++ + + + G +++F + + R + A
Sbjct: 45 IRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFGPPAEVVER----LKA 100
Query: 109 MGKKTGVAINPETPVAILEDVIDE-IDMILIMTVNPGFGGQQ--LIESTIPKIRQAKALI 165
G K + T V D ++ GG + T + + + +
Sbjct: 101 AGIKVIPTV---TSVEEARKAEAAGADALVA--QGAEAGGHRGTFDIGTFALVPEVRDAV 155
Query: 166 GKRSISLEVDGGV-TSRNIKSLVQAGADLLVVGSSF 200
I + GG+ R I + + GAD + +G+ F
Sbjct: 156 ---DIPVIAAGGIADGRGIAAALALGADGVQMGTRF 188
>gnl|CDD|144742 pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This
TIM alpha/beta barrel structure is found in xylose
isomerase and in endonuclease IV (EC:3.1.21.2). This
domain is also found in the N termini of bacterial
myo-inositol catabolism proteins. These are involved in
the myo-inositol catabolism pathway, and is required for
growth on myo-inositol in Rhizobium leguminosarum bv.
viciae.
Length = 201
Score = 28.1 bits (63), Expect = 2.0
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 19/83 (22%)
Query: 71 ISSIDSHINIIADAGCDIITFHPESSP----------HIRRSLRTIHAMGKKTGVAINPE 120
+ ++ I + A G ++ HP + + SL + + ++ GV + E
Sbjct: 63 LEALKRAIELAAALGAKVVVVHPGGALPGEDREEALDRLAESLNELAELAEEYGVKLALE 122
Query: 121 T---------PVAILEDVIDEID 134
+I+E+D
Sbjct: 123 NHPGTGVELGYFEEALRLIEEVD 145
>gnl|CDD|38265 KOG3055, KOG3055, KOG3055, Phosphoribosylformimino-5-aminoimidazole
carboxamide ribonucleotide (ProFAR) isomerase [Amino
acid transport and metabolism].
Length = 263
Score = 28.0 bits (62), Expect = 2.3
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 172 LEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216
L+V GG+ S N S ++ GA ++V S FN G+ +RL D+
Sbjct: 85 LQVGGGINSENCMSWLEEGASKVIVTSWLFNN-GKFDL-ERLKDI 127
>gnl|CDD|30701 COG0352, ThiE, Thiamine monophosphate synthase [Coenzyme
metabolism].
Length = 211
Score = 27.6 bits (61), Expect = 3.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 176 GGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRL 213
GG+ N+ +++AGAD + V S+ + + AK L
Sbjct: 165 GGINLENVPEVLEAGADGVAVVSAITSAADPAAAAKAL 202
>gnl|CDD|145185 pfam01884, PcrB, PcrB family. This family contains proteins that
are related to PcrB. The function of these proteins is
unknown.
Length = 231
Score = 26.3 bits (58), Expect = 6.6
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 158 IRQAKALIGKRSISLEVDGGVTSRNI-KSLVQAGADLLVVGSSFFNQKGEISYAKRL 213
I K L R I V GG+ S K + +AGAD++V G+ + +
Sbjct: 174 IAVKKVLDDARLI---VGGGIKSGEKAKEMARAGADVIVTGNVIEEKGDREMAIDAI 227
>gnl|CDD|144591 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31. Glycosyl
hydrolases are key enzymes of carbohydrate metabolism.
Family 31 comprises of enzymes that are, or similar to,
alpha- galactosidases.
Length = 435
Score = 26.1 bits (58), Expect = 7.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 90 TFHPESSPHIRRSLRTIHAMGKKTGVAINP 119
T+ PE P + L +HA G K + I+P
Sbjct: 76 TWDPERFPDPKEMLDELHAKGIKVVLIIDP 105
>gnl|CDD|35506 KOG0285, KOG0285, KOG0285, Pleiotropic regulator 1 [RNA processing
and modification].
Length = 460
Score = 26.2 bits (57), Expect = 7.8
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 35 HFDVMDGCFVPNISFGADVIRSLRSYSDSVF 65
+ + +G F+ N+S +I +L SD V
Sbjct: 344 QWKLPEGEFLQNLSGHNAIINTLSVNSDGVL 374
>gnl|CDD|111930 pfam03089, RAG2, Recombination activating protein 2. V-D-J
recombination is the combinatorial process by which the
huge range of immunoglobulin and T cell binding
specificity is generated from a limited amount of
genetic material. This process is synergistically
activated by RAG1 and RAG2 in developing lymphocytes.
Defects in RAG2 in humans are a cause of severe combined
immunodeficiency B cell negative and Omenn syndrome.
Length = 528
Score = 25.9 bits (57), Expect = 9.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 178 VTSRNIKSLVQAGADLLVVGSS--FFNQKG 205
+T+ N SL+Q G LL F QKG
Sbjct: 6 LTAVNNTSLLQPGFSLLNFDGHVFLFGQKG 35
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.137 0.383
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,603,914
Number of extensions: 136808
Number of successful extensions: 493
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 53
Length of query: 224
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,318,927
Effective search space: 578736218
Effective search space used: 578736218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)