RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate
3-epimerase protein [Candidatus Liberibacter asiaticus str. psy62]
         (224 letters)



>gnl|CDD|180145 PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.
          Length = 220

 Score =  279 bits (717), Expect = 3e-76
 Identities = 100/219 (45%), Positives = 142/219 (64%), Gaps = 5/219 (2%)

Query: 4   SIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDS 63
            + I PSIL+ADF+RLGEE+  +  AGA  IH DVMDG FVPN++ G  V+ ++R  +  
Sbjct: 3   MVLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKL 62

Query: 64  VFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPV 123
             D HLM+ + D ++   A AG DIITFH E+S HI R L+ I + G K G+ +NP TP+
Sbjct: 63  PLDVHLMVENPDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPL 122

Query: 124 AILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKR--SISLEVDGGVTSR 181
             LEDV+D +D++L+M+VNPGFGGQ+ I   + KIR+ + LI +R   I +EVDGG+ + 
Sbjct: 123 EPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINAD 182

Query: 182 NIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSA 220
           NIK   +AGAD+ V GS+ F       Y + ++ L+   
Sbjct: 183 NIKECAEAGADVFVAGSAVFGAP---DYKEAIDSLRAEL 218


>gnl|CDD|130231 TIGR01163, rpe, ribulose-phosphate 3-epimerase.  This family
           consists of Ribulose-phosphate 3-epimerase, also known
           as pentose-5-phosphate 3-epimerase (PPE). PPE converts
           D-ribulose 5-phosphate into D-xylulose 5-phosphate in
           Calvin's reductive pentose phosphate cycle. It has been
           found in a wide range of bacteria, archebacteria, fungi
           and plants.
          Length = 210

 Score =  248 bits (636), Expect = 8e-67
 Identities = 102/201 (50%), Positives = 139/201 (69%), Gaps = 2/201 (0%)

Query: 7   IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD 66
           I PSIL+ADF+RLGEE+  + +AGA  IH DVMDG FVPN++FG  V+ +LR Y+D   D
Sbjct: 1   IAPSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPID 60

Query: 67  CHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAIL 126
            HLM+ + D +I   A+AG DIIT HPE+S HI R L+ I  +G K G+ +NP TP+  L
Sbjct: 61  VHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFL 120

Query: 127 EDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI--GKRSISLEVDGGVTSRNIK 184
           E V+ ++D++L+M+VNPGFGGQ+ I  T+ KIR+ + +I     SI +EVDGGV   N +
Sbjct: 121 EYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNAR 180

Query: 185 SLVQAGADLLVVGSSFFNQKG 205
            L +AGAD+LV GS+ F    
Sbjct: 181 ELAEAGADILVAGSAIFGADD 201


>gnl|CDD|177968 PLN02334, PLN02334, ribulose-phosphate 3-epimerase.
          Length = 229

 Score =  236 bits (605), Expect = 3e-63
 Identities = 91/223 (40%), Positives = 135/223 (60%), Gaps = 9/223 (4%)

Query: 1   MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY 60
                 I PSIL+ADF+ L EE   +  AGA  +H DVMDG FVPN++ G  V+++LR +
Sbjct: 4   SKNDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKH 63

Query: 61  SDSVFDCHLMISSIDSHINIIADAGCDIITFHPE--SSPHIRRSLRTIHAMGKKTGVAIN 118
           +D+  DCHLM+++ + ++   A AG  I TFH E  S+ H+ R ++ I + G K GV +N
Sbjct: 64  TDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLN 123

Query: 119 PETPVAILEDVID--EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDG 176
           P TPV  +E V++   +DM+L+M+V PGFGGQ  I S + K+R  +    +  I  EVDG
Sbjct: 124 PGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDI--EVDG 181

Query: 177 GVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKS 219
           GV    I    +AGA+++V GS+ F       YA+ ++ L+ S
Sbjct: 182 GVGPSTIDKAAEAGANVIVAGSAVFGAP---DYAEVISGLRAS 221


>gnl|CDD|181575 PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional.
          Length = 220

 Score =  203 bits (517), Expect = 4e-53
 Identities = 95/200 (47%), Positives = 136/200 (68%), Gaps = 3/200 (1%)

Query: 7   IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSV-F 65
           I PSIL+ADF+RLGE++  +  AGA  +HFDVMD  +VPN++FGA + ++LR Y  +   
Sbjct: 2   IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPI 61

Query: 66  DCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAI 125
           D HLM+  +D  I   A AG  +ITFH E+S H+ R+L+ I   G + GV +NP TP+  
Sbjct: 62  DVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHH 121

Query: 126 LEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK--RSISLEVDGGVTSRNI 183
           LE ++D++D+IL+M+VNPGFGGQ  I  T+ K+R  + +I +  R I LE+DGGV   NI
Sbjct: 122 LEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNI 181

Query: 184 KSLVQAGADLLVVGSSFFNQ 203
           + + +AGAD+ V GS+ F Q
Sbjct: 182 REIAEAGADMFVAGSAIFGQ 201


>gnl|CDD|136958 PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional.
          Length = 223

 Score =  199 bits (507), Expect = 5e-52
 Identities = 96/207 (46%), Positives = 138/207 (66%), Gaps = 4/207 (1%)

Query: 1   MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY 60
           M P+  I PSIL+ADF+RLGEE+ N+ KAGA  +HFDVMD  +VPN++ G  V ++LR +
Sbjct: 1   MQPTA-IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKH 59

Query: 61  SDSV-FDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINP 119
             +   D HLM+  +D  +   ADAG   I+FHPE+S H+ R+++ I + G + G+ +NP
Sbjct: 60  GITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNP 119

Query: 120 ETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK--RSISLEVDGG 177
            TPV IL+ V+ E+D++L+M+VNPGFGGQ  I S + K+R  +  I    + I LE+DGG
Sbjct: 120 ATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGG 179

Query: 178 VTSRNIKSLVQAGADLLVVGSSFFNQK 204
           V + NI ++  AGAD  V GS+ FN  
Sbjct: 180 VKADNIGAIAAAGADTFVAGSAIFNAP 206


>gnl|CDD|185495 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase;
           Provisional.
          Length = 228

 Score =  198 bits (505), Expect = 1e-51
 Identities = 90/202 (44%), Positives = 124/202 (61%), Gaps = 6/202 (2%)

Query: 7   IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF- 65
           I PSILAADFS+L +E  ++   GA  +H DVMDG FVPN+SFG  V++SLR +  + F 
Sbjct: 9   IAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFL 68

Query: 66  DCHLMISSIDSHINIIADAGCDIITFHPES-SPHIRRSLRTIHAMGKKTGVAINPETPVA 124
           DCHLM+S+ +  ++  A AG    TFH E+     +   R I   G K GVAI P+TPV 
Sbjct: 69  DCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVE 128

Query: 125 ILEDVID--EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRN 182
           +L  +ID   +DM+L+MTV PGFGGQ  +   +PK+R+ +      +I  +VDGG+    
Sbjct: 129 VLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNI--QVDGGINLET 186

Query: 183 IKSLVQAGADLLVVGSSFFNQK 204
           I     AGA+++V GSS F  K
Sbjct: 187 IDIAADAGANVIVAGSSIFKAK 208


>gnl|CDD|182048 PRK09722, PRK09722, allulose-6-phosphate 3-epimerase; Provisional.
          Length = 229

 Score =  175 bits (446), Expect = 7e-45
 Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 5/211 (2%)

Query: 4   SIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDS 63
            ++I PS++  D  +  E+I  +    A   H D+MDG FVPN++     +  ++  +  
Sbjct: 2   RMKISPSLMCMDLLKFKEQIEFLNSK-ADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASK 60

Query: 64  VFDCHLMISSIDSHINIIADAGCDIITFHPES-SPHIRRSLRTIHAMGKKTGVAINPETP 122
             D HLM++    +I+ +ADAG D IT HPE+ +    R +  I   G K G+ +NPETP
Sbjct: 61  PLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETP 120

Query: 123 VAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVTS 180
           V  ++  I  +D I +MTV+PGF GQ  I   + KI + KAL  +  +   +EVDG    
Sbjct: 121 VESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQ 180

Query: 181 RNIKSLVQAGADLLVVGSS-FFNQKGEISYA 210
           +  + L++AGAD+ +VG+S  FN   +I  A
Sbjct: 181 KTYEKLMEAGADVFIVGTSGLFNLDEDIDEA 211


>gnl|CDD|169179 PRK08005, PRK08005, epimerase; Validated.
          Length = 210

 Score =  100 bits (249), Expect = 4e-22
 Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 2/194 (1%)

Query: 9   PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCH 68
           PS+ +AD  R  E ++ +  A    +H D+ D  F+ NI+FG   I+++   +      H
Sbjct: 5   PSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFH 64

Query: 69  LMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILED 128
           LM+SS    +  +A      I  H ES  +    L  I A+G K G+A+NP TP+     
Sbjct: 65  LMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRY 124

Query: 129 VIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQ 188
           +  ++D ++IMT  P   GQQ I +   K+ Q++      +     DGG+T R  + L  
Sbjct: 125 LALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF--PAAECWADGGITLRAARLLAA 182

Query: 189 AGADLLVVGSSFFN 202
           AGA  LV+G + F 
Sbjct: 183 AGAQHLVIGRALFT 196


>gnl|CDD|169215 PRK08091, PRK08091, ribulose-phosphate 3-epimerase; Validated.
          Length = 228

 Score = 85.7 bits (212), Expect = 8e-18
 Identities = 56/213 (26%), Positives = 105/213 (49%), Gaps = 9/213 (4%)

Query: 11  ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLM 70
           ILA+++ +  E ++ +++   + +HFD+ DG F P  + GA  I+   ++     D HLM
Sbjct: 19  ILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPTHC--FKDVHLM 76

Query: 71  ISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTI--HAMGKKTGVAINPETPVAILED 128
           +            AG DI+T   E +  +  ++  +         G+ + PETP+++LE 
Sbjct: 77  VRDQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEP 136

Query: 129 VIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSL 186
            +D+ID+I I+T++P  G +   +  + ++ Q +  +G R +   + +DG +T      L
Sbjct: 137 YLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYL 196

Query: 187 VQAGADLLVVGSSFFNQKGEISYAKRLNDLKKS 219
            Q   D +V GS+ F+Q         L + K S
Sbjct: 197 KQHQIDWVVSGSALFSQG---ELKTTLKEWKSS 226


>gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional.
          Length = 254

 Score = 74.3 bits (182), Expect = 2e-14
 Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 13/202 (6%)

Query: 11  ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLM 70
           ILA  +  L   +  +       +H D+MDG F P  + G   +  L      + D HLM
Sbjct: 26  ILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ--TFIKDVHLM 83

Query: 71  ISSIDSHINIIADAGCDIITFHPESSPHIRRSL-----RTIHAMGKKT----GVAINPET 121
           ++   +       AG   IT   E   H+  +L     +T+  +G +     G+++ P T
Sbjct: 84  VADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT 143

Query: 122 PVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVT 179
           P+ ++  ++ ++++I ++ VNPG+G +        ++ Q   L+G +     + +DG +T
Sbjct: 144 PLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT 203

Query: 180 SRNIKSLVQAGADLLVVGSSFF 201
              + SL+  G D +V GS+ F
Sbjct: 204 QDQLPSLIAQGIDRVVSGSALF 225


>gnl|CDD|181612 PRK09016, PRK09016, quinolinate phosphoribosyltransferase;
           Validated.
          Length = 296

 Score = 34.7 bits (80), Expect = 0.021
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 17/92 (18%)

Query: 113 TGVAINPETPVAILEDVIDEIDMIL------IMTVNPGFGGQQLIESTIPKIRQAKALIG 166
               ++P+ PV +  + +DE+D  L      IM  N  F        T  ++R+A     
Sbjct: 201 KAFWLHPDVPVEVEVENLDELDQALKAGADIIMLDN--F--------TTEQMREAVKRTN 250

Query: 167 KRSISLEVDGGVTSRNIKSLVQAGADLLVVGS 198
            R+  LEV G VT   ++   + G D + VG+
Sbjct: 251 GRA-LLEVSGNVTLETLREFAETGVDFISVGA 281


>gnl|CDD|178065 PLN02446, PLN02446,
           (5-phosphoribosyl)-5-[(5-
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase.
          Length = 262

 Score = 33.5 bits (77), Expect = 0.048
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 172 LEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216
           L+V GGV S N  S + AGA  ++V S  F   G+I   +RL DL
Sbjct: 86  LQVGGGVNSENAMSYLDAGASHVIVTSYVFRD-GQIDL-ERLKDL 128


>gnl|CDD|132172 TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase.  at the cost
           of also yielding formaldehyde. These latter species tend
           usually have a formaldehyde-activating enzyme to attach
           formaldehyde to the C1 carrier tetrahydromethanopterin.
           In these species, the enzyme is viewed as a lyase rather
           than a synthase and is called D-arabino 3-hexulose
           6-phosphate formaldehyde lyase. Note that there is some
           overlap in specificity with the Escherichia coli enzyme
           3-keto-L-gulonate 6-phosphate decarboxylase.
          Length = 206

 Score = 32.7 bits (75), Expect = 0.075
 Identities = 29/143 (20%), Positives = 62/143 (43%), Gaps = 14/143 (9%)

Query: 80  IIADAGCDIIT---FHPESSPHIRRSLRTIHAMGKKTGV-AINPETPVAILEDVIDE--I 133
               AG DI+T      +++  I+ +++     GK+  V  IN +  V   ++ + E   
Sbjct: 71  QAFAAGADIVTVLGVADDAT--IKGAVKAAKKHGKEVQVDLINVKDKVKRAKE-LKELGA 127

Query: 134 DMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADL 193
           D I + T   G   Q   ++    ++    L+ +  ++  V GG+    I  +++ G D+
Sbjct: 128 DYIGVHT---GLDEQAKGQNPFEDLQTILKLVKEARVA--VAGGINLDTIPDVIKLGPDI 182

Query: 194 LVVGSSFFNQKGEISYAKRLNDL 216
           ++VG +          A+++  L
Sbjct: 183 VIVGGAITKAADPAEAARQIRKL 205


>gnl|CDD|183964 PRK13307, PRK13307, bifunctional formaldehyde-activating
           enzyme/3-hexulose-6-phosphate synthase; Provisional.
          Length = 391

 Score = 32.7 bits (75), Expect = 0.083
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 158 IRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204
           I++ K   GK  I + V GGV   N++  ++AGAD+LVVG +    K
Sbjct: 321 IKEIKKAGGK--ILVAVAGGVRVENVEEALKAGADILVVGRAITKSK 365


>gnl|CDD|178817 PRK00043, thiE, thiamine-phosphate pyrophosphorylase; Reviewed.
          Length = 212

 Score = 32.1 bits (74), Expect = 0.13
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 155 IPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVV 196
           +  +R+ +A +G   I +   GG+T  N   +++AGAD + V
Sbjct: 148 LEGLREIRAAVGD--IPIVAIGGITPENAPEVLEAGADGVAV 187


>gnl|CDD|162719 TIGR02129, hisA_euk, phosphoribosylformimino-5-aminoimidazole
           carboxamide ribotide isomerase, eukaryotic type.  This
           enzyme acts in the biosynthesis of histidine and has
           been characterized in S. cerevisiae and Arabidopsis
           where it complements the E. coli HisA gene. In
           eukaryotes the gene is known as HIS6. In bacteria, this
           gene is found in Fibrobacter succinogenes, presumably
           due to lateral gene transfer from plants in the rumen
           gut.
          Length = 253

 Score = 30.9 bits (70), Expect = 0.27
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 172 LEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK 218
           L+V GG+   N +  +  GA  ++V S  F  KG+    KRL ++  
Sbjct: 79  LQVGGGINDTNAQEWLDEGASHVIVTSWLFT-KGKFDL-KRLKEIVS 123


>gnl|CDD|180230 PRK05742, PRK05742, nicotinate-nucleotide pyrophosphorylase;
           Provisional.
          Length = 277

 Score = 29.8 bits (67), Expect = 0.61
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 117 INPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDG 176
           I P  PV +  + +DE+   L      G     L E ++  +R+A  L   R+  LE  G
Sbjct: 186 IAPGKPVEVEVESLDELRQAL----AAGADIVMLDELSLDDMREAVRLTAGRA-KLEASG 240

Query: 177 GVTSRNIKSLVQAGADLLVVGS 198
           G+    ++ + + G D + +G+
Sbjct: 241 GINESTLRVIAETGVDYISIGA 262


>gnl|CDD|180783 PRK06978, PRK06978, nicotinate-nucleotide pyrophosphorylase;
           Provisional.
          Length = 294

 Score = 29.3 bits (66), Expect = 0.87
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 116 AINPETPVAILEDVIDEIDMILIMTVNPGFGGQQ-LIES-TIPKIRQAKALIGKRSISLE 173
           A+N   PV I  + + +++  L        G Q  L+++ T+  +R+A  +   R++ LE
Sbjct: 201 ALNAGVPVQIEVETLAQLETAL------AHGAQSVLLDNFTLDMMREAVRVTAGRAV-LE 253

Query: 174 VDGGVTSRNIKSLVQAGADLLVVGS 198
           V GGV    +++  + G D + +G+
Sbjct: 254 VSGGVNFDTVRAFAETGVDRISIGA 278


>gnl|CDD|184165 PRK13585, PRK13585,
           1-(5-phosphoribosyl)-5-[(5-
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase; Provisional.
          Length = 241

 Score = 29.1 bits (66), Expect = 1.0
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 162 KALIGKRSISLEVDGGVTSRN-IKSLVQAGADLLVVGSSFFNQKGEI 207
           K L+    I +   GGVT+ + +++L +AGA  +VVGS+ +  KG+ 
Sbjct: 186 KELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALY--KGKF 230


>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein.  This
           model represents a family of proteins, often annotated
           as a putative IMP dehydrogenase, related to IMP
           dehydrogenase and GMP reductase and restricted to the
           high GC Gram-positive bacteria. All species in which a
           member is found so far (Corynebacterium glutamicum,
           Mycobacterium tuberculosis, Streptomyces coelicolor,
           etc.) also have IMP dehydrogenase as described by
           TIGRFAMs entry TIGR01302.
          Length = 475

 Score = 28.7 bits (64), Expect = 1.4
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 174 VDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216
           ++G V  +  K+L+ AG D+LV+ ++  +Q   IS  K +  L
Sbjct: 222 INGDVGGKA-KALLDAGVDVLVIDTAHGHQVKMISAIKAVRAL 263


>gnl|CDD|162257 TIGR01219, Pmev_kin_ERG8, phosphomevalonate kinase, ERG8-type,
           eukaryotic branch.  This enzyme is part of the
           mevalonate pathway, one of two alternative pathways for
           the biosynthesis of IPP. In an example of nonorthologous
           gene displacement, two different types of
           phosphomevalonate kinase are found - the animal type and
           this ERG8 type. This model represents plant and fungal
           forms of the ERG8 type of phosphomevalonate kinase.
          Length = 454

 Score = 28.4 bits (63), Expect = 1.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 99  IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGG 147
           IRR +R    + ++  V I PE+   +L+     ++ +L+  V PG GG
Sbjct: 364 IRRLMRQ---ITEEASVDIEPESQTQLLDS-TMSLEGVLLAGV-PGAGG 407


>gnl|CDD|181086 PRK07695, PRK07695, transcriptional regulator TenI; Provisional.
          Length = 201

 Score = 28.4 bits (64), Expect = 1.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 167 KRSISLEVD--GGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK 218
            R++S+ V   GG+T  N + ++ AG   + V S  F+     S AKR  +  K
Sbjct: 145 ARALSIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198


>gnl|CDD|148166 pfam06398, Pex24p, Integral peroxisomal membrane peroxin.
           Peroxisomes play diverse roles in the cell,
           compartmentalising many activities related to lipid
           metabolism and functioning in the decomposition of toxic
           hydrogen peroxide. Sequence similarity was identified
           between two hypothetical proteins and the peroxin
           integral membrane protein Pex24p.
          Length = 355

 Score = 28.1 bits (63), Expect = 1.7
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 80  IIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINP--ETPVAILEDVI 130
           I    G  I+T+HP  S  IRR L  +   G    +A     ET +  LE   
Sbjct: 171 IFLILGAFILTYHPSWSRVIRRLLFYL--TGLDFSLASPLKVETLIKALESKE 221


>gnl|CDD|178537 PLN02951, PLN02951, Molybderin biosynthesis protein CNX2.
          Length = 373

 Score = 28.2 bits (63), Expect = 2.0
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 146 GGQQLIESTIPKI-RQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLL 194
           GG+  +   I  I  Q  +L G +++++  +G   SR +  L +AG   L
Sbjct: 114 GGEPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSL 163


>gnl|CDD|164907 PHA02324, PHA02324, hypothetical protein.
          Length = 47

 Score = 27.7 bits (61), Expect = 2.4
 Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 8/44 (18%)

Query: 139 MTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRN 182
               P   G + IES   K RQ +    K S         TSRN
Sbjct: 1   AAKKPSLSGGKQIESKPKKTRQGQGKNTKYS--------ATSRN 36


>gnl|CDD|162293 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase.
           This model describes a rather tightly conserved cluster
           of IMP dehydrogenase sequences, many of which are
           characterized. The model excludes two related families
           of proteins proposed also to be IMP dehydrogenases, but
           without characterized members. These are related
           families are the subject of separate models.
          Length = 450

 Score = 27.7 bits (62), Expect = 2.6
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 18/108 (16%)

Query: 92  HPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLI 151
            P +S      L     +G   G     +     L      +D+I+I + +   G    +
Sbjct: 202 FPHASKDENGRLI----VGAAVGTREFDKERAEALVKA--GVDVIVIDSSH---GHSIYV 252

Query: 152 ESTIPKIRQAKALIGKRSISLEVDGG--VTSRNIKSLVQAGADLLVVG 197
             +I +I+       K    L++  G   T+   K+L+ AGAD L VG
Sbjct: 253 IDSIKEIK-------KTYPDLDIIAGNVATAEQAKALIDAGADGLRVG 293


>gnl|CDD|130401 TIGR01334, modD, putative molybdenum utilization protein ModD.  The
           gene modD for a member of this family is found with
           molybdenum transport genes modABC in Rhodobacter
           capsulatus. However, disruption of modD causes only a
           4-fold (rather than 500-fold for modA, modB, modC)
           change in the external molybdenum concentration required
           to suppress an alternative nitrogenase. ModD proteins
           are highly similar to nicotinate-nucleotide
           pyrophosphorylase (also called quinolinate
           phosphoribosyltransferase). The function unknown.
          Length = 277

 Score = 27.6 bits (61), Expect = 2.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 170 ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEI 207
            +L   GG+   NI   ++AG DL +  + ++    +I
Sbjct: 236 PTLAAAGGINPENIADYIEAGIDLFITSAPYYAAPCDI 273


>gnl|CDD|181408 PRK08385, PRK08385, nicotinate-nucleotide pyrophosphorylase;
           Provisional.
          Length = 278

 Score = 27.4 bits (61), Expect = 3.5
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 14/83 (16%)

Query: 120 ETPVAILEDVID----EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRS-ISLEV 174
           E  V  LED +       D+I++  + P       I   I  +++     G R  + +EV
Sbjct: 186 EVEVESLEDALKAAKAGADIIMLDNMTPE-----EIREVIEALKRE----GLRERVKIEV 236

Query: 175 DGGVTSRNIKSLVQAGADLLVVG 197
            GG+T  NI+   +   D++ +G
Sbjct: 237 SGGITPENIEEYAKLDVDVISLG 259


>gnl|CDD|161661 TIGR00007, TIGR00007, phosphoribosylformimino-5-aminoimidazole
           carboxamide ribotide isomerase.  Examples of this enzyme
           in Actinobacteria have been found to be bifunctional,
           also possessing phosphoribosylanthranilate isomerase
           activity ; the trusted cutoff here has now been raised
           to 275.0 to exclude the bifunctional group, now
           represented by model TIGR01919. HisA from Lactococcus
           lactis was reported to be inactive (MEDLINE:93322317).
          Length = 230

 Score = 27.2 bits (61), Expect = 3.6
 Identities = 10/64 (15%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 162 KALIGKRSISLEVDGGVTSRN-IKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSA 220
           K ++ +  + ++V GG+ S   ++ L+  G D +++G++       +    +    ++  
Sbjct: 65  KKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIV 124

Query: 221 LAID 224
           +++D
Sbjct: 125 VSLD 128


>gnl|CDD|183866 PRK13125, trpA, tryptophan synthase subunit alpha; Provisional.
          Length = 244

 Score = 26.9 bits (60), Expect = 4.1
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 151 IESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSF 200
           +E  I ++R    L+G  +  L V  G+ S  + +  + AGAD +VVG++F
Sbjct: 172 VERNIKRVRN---LVG--NKYLVVGFGLDSPEDARDALSAGADGVVVGTAF 217


>gnl|CDD|185550 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase;
           Provisional.
          Length = 495

 Score = 26.9 bits (60), Expect = 4.3
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 171 SLEVDGG--VTSRNIKSLVQAGADLLVVG 197
            +++  G  VT+   K+L+ AGAD L +G
Sbjct: 282 HVDIIAGNVVTADQAKNLIDAGADGLRIG 310



 Score = 26.1 bits (58), Expect = 8.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 184 KSLVQAGADLLVVGSSFFNQKGEISYAKRL 213
            +L++AG D+LVV SS  N   +I   K+L
Sbjct: 247 AALIEAGVDVLVVDSSQGNSIYQIDMIKKL 276


>gnl|CDD|180799 PRK07028, PRK07028, bifunctional hexulose-6-phosphate
           synthase/ribonuclease regulator; Validated.
          Length = 430

 Score = 26.5 bits (59), Expect = 5.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 162 KALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSS 199
           K +  + SI + V GG+ +      V AGAD+++VG +
Sbjct: 155 KEVSEEVSIPIAVAGGLDAETAAKAVAAGADIVIVGGN 192


>gnl|CDD|177913 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase.
          Length = 505

 Score = 26.6 bits (59), Expect = 5.6
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 172 LEVDGG--VTSRNIKSLVQAGADLLVVG 197
           L+V GG  VT    ++L+QAG D L VG
Sbjct: 290 LDVIGGNVVTMYQAQNLIQAGVDGLRVG 317


>gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed.
          Length = 389

 Score = 26.4 bits (59), Expect = 5.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 114 GVAINPETPVAIL 126
           GV ++PET VAIL
Sbjct: 88  GVTLDPETEVAIL 100


>gnl|CDD|163008 TIGR02768, TraA_Ti, Ti-type conjugative transfer relaxase TraA.
           This protein contains domains distinctive of a single
           strand exonuclease (N-terminus, MobA/MobL, pfam03389) as
           well as a helicase domain (central region, homologous to
           the corresponding region of the F-type relaxase TraI,
           TIGR02760). This protein likely fills the same role as
           TraI(F), nicking (at the oriT site) and unwinding the
           coiled plasmid prior to conjugative transfer.
          Length = 744

 Score = 26.3 bits (58), Expect = 6.3
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 163 ALIGKRSISLEVDGGVTSRNIKSLVQA---GADLL 194
           AL GK +  L+ + G+ SR + SL  A   G DLL
Sbjct: 403 ALSGKAAEGLQAESGIESRTLASLEYAWANGRDLL 437


>gnl|CDD|180420 PRK06136, PRK06136, uroporphyrin-III C-methyltransferase; Reviewed.
          Length = 249

 Score = 26.3 bits (59), Expect = 6.4
 Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 42/132 (31%)

Query: 16  FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG----ADVIRSL--RSYSDSV--FDC 67
           F R GEE+  +  AG   I ++V     VP I+      A     L  R  + SV     
Sbjct: 94  FGRGGEELEALEAAG---IPYEV-----VPGITAAIAAAAYAGIPLTHRGVARSVTFVTG 145

Query: 68  HLMISSIDSHINIIADA-GCDIITFHPESSPHIRRSLRTIHAMGKKTGVAI--------- 117
           H     ++  +N  A A G D +  +                MG +    I         
Sbjct: 146 HEAAGKLEPEVNWSALADGADTLVIY----------------MGVRNLPYIAAQLLAAGR 189

Query: 118 NPETPVAILEDV 129
            P+TPVAI+E+ 
Sbjct: 190 APDTPVAIIENG 201


>gnl|CDD|184505 PRK14099, PRK14099, glycogen synthase; Provisional.
          Length = 485

 Score = 26.2 bits (58), Expect = 6.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 186 LVQAGADLLVVGSSF 200
           L+QAGAD L+V S F
Sbjct: 365 LIQAGADALLVPSRF 379


>gnl|CDD|132587 TIGR03548, mutarot_permut, cyclically-permuted mutatrotase family
           protein.  Members of this protein family show
           essentially full-length homology, cyclically permuted,
           to YjhT from Escherichia coli. YjhT was shown to act as
           a mutarotase for sialic acid, and by this ability to be
           able to act as a virulence factor. Members of the YjhT
           family (TIGR03547) and this cyclically-permuted family
           have multiple repeats of the beta-propeller-forming
           Kelch repeat.
          Length = 323

 Score = 26.3 bits (58), Expect = 7.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 189 AGADLLVVGSSFFNQKGEISYAKRLNDL 216
            GA LL+ G++ F+  GE+    R  D+
Sbjct: 295 CGAALLLTGNNIFSINGELKPGVRTPDI 322


>gnl|CDD|182257 PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase;
           Provisional.
          Length = 267

 Score = 26.1 bits (57), Expect = 7.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 92  HPESSPHIRRSLRTIHAMGKKTG-VAINPE 120
           HPE    I  S+R I A GK  G +A++P+
Sbjct: 192 HPEVQRIIETSIRRIRAAGKAAGFLAVDPD 221


>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase;
           Validated.
          Length = 479

 Score = 26.0 bits (58), Expect = 7.9
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 147 GQQLIESTIPKIRQAKALIGKRSISLEVDGG-VTSRNIKSLVQAGADLLVVG 197
           G Q  E  +  +R  +AL     I   V G  VT+   + LV+AGAD++ VG
Sbjct: 250 GHQ--EKMLEALRAVRALDPGVPI---VAGNVVTAEGTRDLVEAGADIVKVG 296


>gnl|CDD|178363 PLN02763, PLN02763, hydrolase, hydrolyzing O-glycosyl compounds.
          Length = 978

 Score = 26.0 bits (57), Expect = 8.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 75  DSHINIIADAGCDIITFHPESSP 97
           +S I IIA A   +ITF P  SP
Sbjct: 144 ESIIRIIAPASYPVITFGPFPSP 166


>gnl|CDD|180985 PRK07455, PRK07455,
           keto-hydroxyglutarate-aldolase/keto-deoxy-
           phosphogluconate aldolase; Provisional.
          Length = 187

 Score = 25.8 bits (57), Expect = 8.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 169 SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204
            I L   GGVT  N ++ +QAGA  + +    F ++
Sbjct: 152 HIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFPKE 187


>gnl|CDD|162966 TIGR02666, moaA, molybdenum cofactor biosynthesis protein A,
           bacterial.  The model for this family describes
           molybdenum cofactor biosynthesis protein A, or MoaA, as
           found in bacteria. It does not include the family of
           probable functional equivalent proteins from the
           archaea. MoaA works together with MoaC to synthesize
           precursor Z from guanine.
          Length = 334

 Score = 26.0 bits (58), Expect = 8.8
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 146 GGQQLIESTIPK-IRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGAD 192
           GG+ L+   + + + +  AL G   I+L  +G + +R+ K L +AG  
Sbjct: 67  GGEPLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLK 114


>gnl|CDD|180667 PRK06718, PRK06718, precorrin-2 dehydrogenase; Reviewed.
          Length = 202

 Score = 25.8 bits (57), Expect = 9.0
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 10/60 (16%)

Query: 174 VDGG-VTSRNIKSLVQAGADLLVVGSSF------FNQKGEISYAKRL---NDLKKSALAI 223
           V GG V  R   +L++ GA ++V+            ++G+I + ++    +D+  + L I
Sbjct: 16  VGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVI 75


>gnl|CDD|148572 pfam07034, ORC3_N, Origin recognition complex (ORC) subunit 3
           N-terminus.  This family represents the N-terminus
           (approximately 300 residues) of subunit 3 of the
           eukaryotic origin recognition complex (ORC). Origin
           recognition complex (ORC) is composed of six subunits
           that are essential for cell viability. They collectively
           bind to the autonomously replicating sequence (ARS) in a
           sequence-specific manner and lead to the chromatin
           loading of other replication factors that are essential
           for initiation of DNA replication.
          Length = 313

 Score = 25.8 bits (57), Expect = 9.0
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 13/66 (19%)

Query: 67  CHLMISSIDSHINIIADAGC-----DIITFHPESSPHIRRSLRTIHAMGKKTGVAIN-PE 120
              +   I SHI  + D         ++ F       IR S  +  +  + T   +   E
Sbjct: 35  YQRLWEKIKSHIERLQDESNAKIFDQLLDF-------IRESHASRQSEARDTESEMRARE 87

Query: 121 TPVAIL 126
            P A L
Sbjct: 88  IPTAAL 93


>gnl|CDD|177932 PLN02295, PLN02295, glycerol kinase.
          Length = 512

 Score = 25.8 bits (57), Expect = 9.2
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)

Query: 172 LEVDGGVTSRNIKSLVQAGADLL 194
           L VDGG T+ N+  L+Q  ADLL
Sbjct: 416 LRVDGGATANNL--LMQIQADLL 436


>gnl|CDD|180898 PRK07232, PRK07232, bifunctional malic enzyme
           oxidoreductase/phosphotransacetylase; Reviewed.
          Length = 752

 Score = 25.8 bits (58), Expect = 10.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 157 KIRQAKALIGKRSISLEVDG 176
           K+R+A  L+ +R+  LEVDG
Sbjct: 644 KMREAVELLRERAPDLEVDG 663


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,677,263
Number of extensions: 236588
Number of successful extensions: 661
Number of sequences better than 10.0: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 75
Length of query: 224
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,049,753
Effective search space: 542666902
Effective search space used: 542666902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)