RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate 3-epimerase protein [Candidatus Liberibacter asiaticus str. psy62] (224 letters) >gnl|CDD|180145 PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated. Length = 220 Score = 279 bits (717), Expect = 3e-76 Identities = 100/219 (45%), Positives = 142/219 (64%), Gaps = 5/219 (2%) Query: 4 SIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDS 63 + I PSIL+ADF+RLGEE+ + AGA IH DVMDG FVPN++ G V+ ++R + Sbjct: 3 MVLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKL 62 Query: 64 VFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPV 123 D HLM+ + D ++ A AG DIITFH E+S HI R L+ I + G K G+ +NP TP+ Sbjct: 63 PLDVHLMVENPDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPL 122 Query: 124 AILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKR--SISLEVDGGVTSR 181 LEDV+D +D++L+M+VNPGFGGQ+ I + KIR+ + LI +R I +EVDGG+ + Sbjct: 123 EPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINAD 182 Query: 182 NIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSA 220 NIK +AGAD+ V GS+ F Y + ++ L+ Sbjct: 183 NIKECAEAGADVFVAGSAVFGAP---DYKEAIDSLRAEL 218 >gnl|CDD|130231 TIGR01163, rpe, ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. Length = 210 Score = 248 bits (636), Expect = 8e-67 Identities = 102/201 (50%), Positives = 139/201 (69%), Gaps = 2/201 (0%) Query: 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFD 66 I PSIL+ADF+RLGEE+ + +AGA IH DVMDG FVPN++FG V+ +LR Y+D D Sbjct: 1 IAPSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPID 60 Query: 67 CHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAIL 126 HLM+ + D +I A+AG DIIT HPE+S HI R L+ I +G K G+ +NP TP+ L Sbjct: 61 VHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFL 120 Query: 127 EDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALI--GKRSISLEVDGGVTSRNIK 184 E V+ ++D++L+M+VNPGFGGQ+ I T+ KIR+ + +I SI +EVDGGV N + Sbjct: 121 EYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNAR 180 Query: 185 SLVQAGADLLVVGSSFFNQKG 205 L +AGAD+LV GS+ F Sbjct: 181 ELAEAGADILVAGSAIFGADD 201 >gnl|CDD|177968 PLN02334, PLN02334, ribulose-phosphate 3-epimerase. Length = 229 Score = 236 bits (605), Expect = 3e-63 Identities = 91/223 (40%), Positives = 135/223 (60%), Gaps = 9/223 (4%) Query: 1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY 60 I PSIL+ADF+ L EE + AGA +H DVMDG FVPN++ G V+++LR + Sbjct: 4 SKNDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKH 63 Query: 61 SDSVFDCHLMISSIDSHINIIADAGCDIITFHPE--SSPHIRRSLRTIHAMGKKTGVAIN 118 +D+ DCHLM+++ + ++ A AG I TFH E S+ H+ R ++ I + G K GV +N Sbjct: 64 TDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLN 123 Query: 119 PETPVAILEDVID--EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDG 176 P TPV +E V++ +DM+L+M+V PGFGGQ I S + K+R + + I EVDG Sbjct: 124 PGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDI--EVDG 181 Query: 177 GVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKS 219 GV I +AGA+++V GS+ F YA+ ++ L+ S Sbjct: 182 GVGPSTIDKAAEAGANVIVAGSAVFGAP---DYAEVISGLRAS 221 >gnl|CDD|181575 PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional. Length = 220 Score = 203 bits (517), Expect = 4e-53 Identities = 95/200 (47%), Positives = 136/200 (68%), Gaps = 3/200 (1%) Query: 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSV-F 65 I PSIL+ADF+RLGE++ + AGA +HFDVMD +VPN++FGA + ++LR Y + Sbjct: 2 IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPI 61 Query: 66 DCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAI 125 D HLM+ +D I A AG +ITFH E+S H+ R+L+ I G + GV +NP TP+ Sbjct: 62 DVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHH 121 Query: 126 LEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK--RSISLEVDGGVTSRNI 183 LE ++D++D+IL+M+VNPGFGGQ I T+ K+R + +I + R I LE+DGGV NI Sbjct: 122 LEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNI 181 Query: 184 KSLVQAGADLLVVGSSFFNQ 203 + + +AGAD+ V GS+ F Q Sbjct: 182 REIAEAGADMFVAGSAIFGQ 201 >gnl|CDD|136958 PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional. Length = 223 Score = 199 bits (507), Expect = 5e-52 Identities = 96/207 (46%), Positives = 138/207 (66%), Gaps = 4/207 (1%) Query: 1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY 60 M P+ I PSIL+ADF+RLGEE+ N+ KAGA +HFDVMD +VPN++ G V ++LR + Sbjct: 1 MQPTA-IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKH 59 Query: 61 SDSV-FDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINP 119 + D HLM+ +D + ADAG I+FHPE+S H+ R+++ I + G + G+ +NP Sbjct: 60 GITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNP 119 Query: 120 ETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGK--RSISLEVDGG 177 TPV IL+ V+ E+D++L+M+VNPGFGGQ I S + K+R + I + I LE+DGG Sbjct: 120 ATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGG 179 Query: 178 VTSRNIKSLVQAGADLLVVGSSFFNQK 204 V + NI ++ AGAD V GS+ FN Sbjct: 180 VKADNIGAIAAAGADTFVAGSAIFNAP 206 >gnl|CDD|185495 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase; Provisional. Length = 228 Score = 198 bits (505), Expect = 1e-51 Identities = 90/202 (44%), Positives = 124/202 (61%), Gaps = 6/202 (2%) Query: 7 IVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVF- 65 I PSILAADFS+L +E ++ GA +H DVMDG FVPN+SFG V++SLR + + F Sbjct: 9 IAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFL 68 Query: 66 DCHLMISSIDSHINIIADAGCDIITFHPES-SPHIRRSLRTIHAMGKKTGVAINPETPVA 124 DCHLM+S+ + ++ A AG TFH E+ + R I G K GVAI P+TPV Sbjct: 69 DCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVE 128 Query: 125 ILEDVID--EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRN 182 +L +ID +DM+L+MTV PGFGGQ + +PK+R+ + +I +VDGG+ Sbjct: 129 VLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNI--QVDGGINLET 186 Query: 183 IKSLVQAGADLLVVGSSFFNQK 204 I AGA+++V GSS F K Sbjct: 187 IDIAADAGANVIVAGSSIFKAK 208 >gnl|CDD|182048 PRK09722, PRK09722, allulose-6-phosphate 3-epimerase; Provisional. Length = 229 Score = 175 bits (446), Expect = 7e-45 Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 5/211 (2%) Query: 4 SIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDS 63 ++I PS++ D + E+I + A H D+MDG FVPN++ + ++ + Sbjct: 2 RMKISPSLMCMDLLKFKEQIEFLNSK-ADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASK 60 Query: 64 VFDCHLMISSIDSHINIIADAGCDIITFHPES-SPHIRRSLRTIHAMGKKTGVAINPETP 122 D HLM++ +I+ +ADAG D IT HPE+ + R + I G K G+ +NPETP Sbjct: 61 PLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETP 120 Query: 123 VAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVTS 180 V ++ I +D I +MTV+PGF GQ I + KI + KAL + + +EVDG Sbjct: 121 VESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQ 180 Query: 181 RNIKSLVQAGADLLVVGSS-FFNQKGEISYA 210 + + L++AGAD+ +VG+S FN +I A Sbjct: 181 KTYEKLMEAGADVFIVGTSGLFNLDEDIDEA 211 >gnl|CDD|169179 PRK08005, PRK08005, epimerase; Validated. Length = 210 Score = 100 bits (249), Expect = 4e-22 Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 2/194 (1%) Query: 9 PSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCH 68 PS+ +AD R E ++ + A +H D+ D F+ NI+FG I+++ + H Sbjct: 5 PSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFH 64 Query: 69 LMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILED 128 LM+SS + +A I H ES + L I A+G K G+A+NP TP+ Sbjct: 65 LMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRY 124 Query: 129 VIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQ 188 + ++D ++IMT P GQQ I + K+ Q++ + DGG+T R + L Sbjct: 125 LALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF--PAAECWADGGITLRAARLLAA 182 Query: 189 AGADLLVVGSSFFN 202 AGA LV+G + F Sbjct: 183 AGAQHLVIGRALFT 196 >gnl|CDD|169215 PRK08091, PRK08091, ribulose-phosphate 3-epimerase; Validated. Length = 228 Score = 85.7 bits (212), Expect = 8e-18 Identities = 56/213 (26%), Positives = 105/213 (49%), Gaps = 9/213 (4%) Query: 11 ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLM 70 ILA+++ + E ++ +++ + +HFD+ DG F P + GA I+ ++ D HLM Sbjct: 19 ILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPTHC--FKDVHLM 76 Query: 71 ISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTI--HAMGKKTGVAINPETPVAILED 128 + AG DI+T E + + ++ + G+ + PETP+++LE Sbjct: 77 VRDQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEP 136 Query: 129 VIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVTSRNIKSL 186 +D+ID+I I+T++P G + + + ++ Q + +G R + + +DG +T L Sbjct: 137 YLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYL 196 Query: 187 VQAGADLLVVGSSFFNQKGEISYAKRLNDLKKS 219 Q D +V GS+ F+Q L + K S Sbjct: 197 KQHQIDWVVSGSALFSQG---ELKTTLKEWKSS 226 >gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional. Length = 254 Score = 74.3 bits (182), Expect = 2e-14 Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 13/202 (6%) Query: 11 ILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSYSDSVFDCHLM 70 ILA + L + + +H D+MDG F P + G + L + D HLM Sbjct: 26 ILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ--TFIKDVHLM 83 Query: 71 ISSIDSHINIIADAGCDIITFHPESSPHIRRSL-----RTIHAMGKKT----GVAINPET 121 ++ + AG IT E H+ +L +T+ +G + G+++ P T Sbjct: 84 VADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT 143 Query: 122 PVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSIS--LEVDGGVT 179 P+ ++ ++ ++++I ++ VNPG+G + ++ Q L+G + + +DG +T Sbjct: 144 PLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT 203 Query: 180 SRNIKSLVQAGADLLVVGSSFF 201 + SL+ G D +V GS+ F Sbjct: 204 QDQLPSLIAQGIDRVVSGSALF 225 >gnl|CDD|181612 PRK09016, PRK09016, quinolinate phosphoribosyltransferase; Validated. Length = 296 Score = 34.7 bits (80), Expect = 0.021 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 17/92 (18%) Query: 113 TGVAINPETPVAILEDVIDEIDMIL------IMTVNPGFGGQQLIESTIPKIRQAKALIG 166 ++P+ PV + + +DE+D L IM N F T ++R+A Sbjct: 201 KAFWLHPDVPVEVEVENLDELDQALKAGADIIMLDN--F--------TTEQMREAVKRTN 250 Query: 167 KRSISLEVDGGVTSRNIKSLVQAGADLLVVGS 198 R+ LEV G VT ++ + G D + VG+ Sbjct: 251 GRA-LLEVSGNVTLETLREFAETGVDFISVGA 281 >gnl|CDD|178065 PLN02446, PLN02446, (5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase. Length = 262 Score = 33.5 bits (77), Expect = 0.048 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Query: 172 LEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 L+V GGV S N S + AGA ++V S F G+I +RL DL Sbjct: 86 LQVGGGVNSENAMSYLDAGASHVIVTSYVFRD-GQIDL-ERLKDL 128 >gnl|CDD|132172 TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. Length = 206 Score = 32.7 bits (75), Expect = 0.075 Identities = 29/143 (20%), Positives = 62/143 (43%), Gaps = 14/143 (9%) Query: 80 IIADAGCDIIT---FHPESSPHIRRSLRTIHAMGKKTGV-AINPETPVAILEDVIDE--I 133 AG DI+T +++ I+ +++ GK+ V IN + V ++ + E Sbjct: 71 QAFAAGADIVTVLGVADDAT--IKGAVKAAKKHGKEVQVDLINVKDKVKRAKE-LKELGA 127 Query: 134 DMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADL 193 D I + T G Q ++ ++ L+ + ++ V GG+ I +++ G D+ Sbjct: 128 DYIGVHT---GLDEQAKGQNPFEDLQTILKLVKEARVA--VAGGINLDTIPDVIKLGPDI 182 Query: 194 LVVGSSFFNQKGEISYAKRLNDL 216 ++VG + A+++ L Sbjct: 183 VIVGGAITKAADPAEAARQIRKL 205 >gnl|CDD|183964 PRK13307, PRK13307, bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional. Length = 391 Score = 32.7 bits (75), Expect = 0.083 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Query: 158 IRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 I++ K GK I + V GGV N++ ++AGAD+LVVG + K Sbjct: 321 IKEIKKAGGK--ILVAVAGGVRVENVEEALKAGADILVVGRAITKSK 365 >gnl|CDD|178817 PRK00043, thiE, thiamine-phosphate pyrophosphorylase; Reviewed. Length = 212 Score = 32.1 bits (74), Expect = 0.13 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Query: 155 IPKIRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVV 196 + +R+ +A +G I + GG+T N +++AGAD + V Sbjct: 148 LEGLREIRAAVGD--IPIVAIGGITPENAPEVLEAGADGVAV 187 >gnl|CDD|162719 TIGR02129, hisA_euk, phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. Length = 253 Score = 30.9 bits (70), Expect = 0.27 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 172 LEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK 218 L+V GG+ N + + GA ++V S F KG+ KRL ++ Sbjct: 79 LQVGGGINDTNAQEWLDEGASHVIVTSWLFT-KGKFDL-KRLKEIVS 123 >gnl|CDD|180230 PRK05742, PRK05742, nicotinate-nucleotide pyrophosphorylase; Provisional. Length = 277 Score = 29.8 bits (67), Expect = 0.61 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Query: 117 INPETPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDG 176 I P PV + + +DE+ L G L E ++ +R+A L R+ LE G Sbjct: 186 IAPGKPVEVEVESLDELRQAL----AAGADIVMLDELSLDDMREAVRLTAGRA-KLEASG 240 Query: 177 GVTSRNIKSLVQAGADLLVVGS 198 G+ ++ + + G D + +G+ Sbjct: 241 GINESTLRVIAETGVDYISIGA 262 >gnl|CDD|180783 PRK06978, PRK06978, nicotinate-nucleotide pyrophosphorylase; Provisional. Length = 294 Score = 29.3 bits (66), Expect = 0.87 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 9/85 (10%) Query: 116 AINPETPVAILEDVIDEIDMILIMTVNPGFGGQQ-LIES-TIPKIRQAKALIGKRSISLE 173 A+N PV I + + +++ L G Q L+++ T+ +R+A + R++ LE Sbjct: 201 ALNAGVPVQIEVETLAQLETAL------AHGAQSVLLDNFTLDMMREAVRVTAGRAV-LE 253 Query: 174 VDGGVTSRNIKSLVQAGADLLVVGS 198 V GGV +++ + G D + +G+ Sbjct: 254 VSGGVNFDTVRAFAETGVDRISIGA 278 >gnl|CDD|184165 PRK13585, PRK13585, 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional. Length = 241 Score = 29.1 bits (66), Expect = 1.0 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%) Query: 162 KALIGKRSISLEVDGGVTSRN-IKSLVQAGADLLVVGSSFFNQKGEI 207 K L+ I + GGVT+ + +++L +AGA +VVGS+ + KG+ Sbjct: 186 KELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALY--KGKF 230 >gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. Length = 475 Score = 28.7 bits (64), Expect = 1.4 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 174 VDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDL 216 ++G V + K+L+ AG D+LV+ ++ +Q IS K + L Sbjct: 222 INGDVGGKA-KALLDAGVDVLVIDTAHGHQVKMISAIKAVRAL 263 >gnl|CDD|162257 TIGR01219, Pmev_kin_ERG8, phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase. Length = 454 Score = 28.4 bits (63), Expect = 1.4 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Query: 99 IRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGG 147 IRR +R + ++ V I PE+ +L+ ++ +L+ V PG GG Sbjct: 364 IRRLMRQ---ITEEASVDIEPESQTQLLDS-TMSLEGVLLAGV-PGAGG 407 >gnl|CDD|181086 PRK07695, PRK07695, transcriptional regulator TenI; Provisional. Length = 201 Score = 28.4 bits (64), Expect = 1.5 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Query: 167 KRSISLEVD--GGVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKK 218 R++S+ V GG+T N + ++ AG + V S F+ S AKR + K Sbjct: 145 ARALSIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198 >gnl|CDD|148166 pfam06398, Pex24p, Integral peroxisomal membrane peroxin. Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p. Length = 355 Score = 28.1 bits (63), Expect = 1.7 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 4/53 (7%) Query: 80 IIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINP--ETPVAILEDVI 130 I G I+T+HP S IRR L + G +A ET + LE Sbjct: 171 IFLILGAFILTYHPSWSRVIRRLLFYL--TGLDFSLASPLKVETLIKALESKE 221 >gnl|CDD|178537 PLN02951, PLN02951, Molybderin biosynthesis protein CNX2. Length = 373 Score = 28.2 bits (63), Expect = 2.0 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 146 GGQQLIESTIPKI-RQAKALIGKRSISLEVDGGVTSRNIKSLVQAGADLL 194 GG+ + I I Q +L G +++++ +G SR + L +AG L Sbjct: 114 GGEPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSL 163 >gnl|CDD|164907 PHA02324, PHA02324, hypothetical protein. Length = 47 Score = 27.7 bits (61), Expect = 2.4 Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 8/44 (18%) Query: 139 MTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTSRN 182 P G + IES K RQ + K S TSRN Sbjct: 1 AAKKPSLSGGKQIESKPKKTRQGQGKNTKYS--------ATSRN 36 >gnl|CDD|162293 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. Length = 450 Score = 27.7 bits (62), Expect = 2.6 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 18/108 (16%) Query: 92 HPESSPHIRRSLRTIHAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNPGFGGQQLI 151 P +S L +G G + L +D+I+I + + G + Sbjct: 202 FPHASKDENGRLI----VGAAVGTREFDKERAEALVKA--GVDVIVIDSSH---GHSIYV 252 Query: 152 ESTIPKIRQAKALIGKRSISLEVDGG--VTSRNIKSLVQAGADLLVVG 197 +I +I+ K L++ G T+ K+L+ AGAD L VG Sbjct: 253 IDSIKEIK-------KTYPDLDIIAGNVATAEQAKALIDAGADGLRVG 293 >gnl|CDD|130401 TIGR01334, modD, putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. Length = 277 Score = 27.6 bits (61), Expect = 2.7 Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 170 ISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQKGEI 207 +L GG+ NI ++AG DL + + ++ +I Sbjct: 236 PTLAAAGGINPENIADYIEAGIDLFITSAPYYAAPCDI 273 >gnl|CDD|181408 PRK08385, PRK08385, nicotinate-nucleotide pyrophosphorylase; Provisional. Length = 278 Score = 27.4 bits (61), Expect = 3.5 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 14/83 (16%) Query: 120 ETPVAILEDVID----EIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRS-ISLEV 174 E V LED + D+I++ + P I I +++ G R + +EV Sbjct: 186 EVEVESLEDALKAAKAGADIIMLDNMTPE-----EIREVIEALKRE----GLRERVKIEV 236 Query: 175 DGGVTSRNIKSLVQAGADLLVVG 197 GG+T NI+ + D++ +G Sbjct: 237 SGGITPENIEEYAKLDVDVISLG 259 >gnl|CDD|161661 TIGR00007, TIGR00007, phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). Length = 230 Score = 27.2 bits (61), Expect = 3.6 Identities = 10/64 (15%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 162 KALIGKRSISLEVDGGVTSRN-IKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSA 220 K ++ + + ++V GG+ S ++ L+ G D +++G++ + + ++ Sbjct: 65 KKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIV 124 Query: 221 LAID 224 +++D Sbjct: 125 VSLD 128 >gnl|CDD|183866 PRK13125, trpA, tryptophan synthase subunit alpha; Provisional. Length = 244 Score = 26.9 bits (60), Expect = 4.1 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 6/51 (11%) Query: 151 IESTIPKIRQAKALIGKRSISLEVDGGVTS-RNIKSLVQAGADLLVVGSSF 200 +E I ++R L+G + L V G+ S + + + AGAD +VVG++F Sbjct: 172 VERNIKRVRN---LVG--NKYLVVGFGLDSPEDARDALSAGADGVVVGTAF 217 >gnl|CDD|185550 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional. Length = 495 Score = 26.9 bits (60), Expect = 4.3 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Query: 171 SLEVDGG--VTSRNIKSLVQAGADLLVVG 197 +++ G VT+ K+L+ AGAD L +G Sbjct: 282 HVDIIAGNVVTADQAKNLIDAGADGLRIG 310 Score = 26.1 bits (58), Expect = 8.6 Identities = 13/30 (43%), Positives = 19/30 (63%) Query: 184 KSLVQAGADLLVVGSSFFNQKGEISYAKRL 213 +L++AG D+LVV SS N +I K+L Sbjct: 247 AALIEAGVDVLVVDSSQGNSIYQIDMIKKL 276 >gnl|CDD|180799 PRK07028, PRK07028, bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated. Length = 430 Score = 26.5 bits (59), Expect = 5.0 Identities = 13/38 (34%), Positives = 22/38 (57%) Query: 162 KALIGKRSISLEVDGGVTSRNIKSLVQAGADLLVVGSS 199 K + + SI + V GG+ + V AGAD+++VG + Sbjct: 155 KEVSEEVSIPIAVAGGLDAETAAKAVAAGADIVIVGGN 192 >gnl|CDD|177913 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase. Length = 505 Score = 26.6 bits (59), Expect = 5.6 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Query: 172 LEVDGG--VTSRNIKSLVQAGADLLVVG 197 L+V GG VT ++L+QAG D L VG Sbjct: 290 LDVIGGNVVTMYQAQNLIQAGVDGLRVG 317 >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed. Length = 389 Score = 26.4 bits (59), Expect = 5.9 Identities = 9/13 (69%), Positives = 11/13 (84%) Query: 114 GVAINPETPVAIL 126 GV ++PET VAIL Sbjct: 88 GVTLDPETEVAIL 100 >gnl|CDD|163008 TIGR02768, TraA_Ti, Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. Length = 744 Score = 26.3 bits (58), Expect = 6.3 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Query: 163 ALIGKRSISLEVDGGVTSRNIKSLVQA---GADLL 194 AL GK + L+ + G+ SR + SL A G DLL Sbjct: 403 ALSGKAAEGLQAESGIESRTLASLEYAWANGRDLL 437 >gnl|CDD|180420 PRK06136, PRK06136, uroporphyrin-III C-methyltransferase; Reviewed. Length = 249 Score = 26.3 bits (59), Expect = 6.4 Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 42/132 (31%) Query: 16 FSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFG----ADVIRSL--RSYSDSV--FDC 67 F R GEE+ + AG I ++V VP I+ A L R + SV Sbjct: 94 FGRGGEELEALEAAG---IPYEV-----VPGITAAIAAAAYAGIPLTHRGVARSVTFVTG 145 Query: 68 HLMISSIDSHINIIADA-GCDIITFHPESSPHIRRSLRTIHAMGKKTGVAI--------- 117 H ++ +N A A G D + + MG + I Sbjct: 146 HEAAGKLEPEVNWSALADGADTLVIY----------------MGVRNLPYIAAQLLAAGR 189 Query: 118 NPETPVAILEDV 129 P+TPVAI+E+ Sbjct: 190 APDTPVAIIENG 201 >gnl|CDD|184505 PRK14099, PRK14099, glycogen synthase; Provisional. Length = 485 Score = 26.2 bits (58), Expect = 6.8 Identities = 10/15 (66%), Positives = 12/15 (80%) Query: 186 LVQAGADLLVVGSSF 200 L+QAGAD L+V S F Sbjct: 365 LIQAGADALLVPSRF 379 >gnl|CDD|132587 TIGR03548, mutarot_permut, cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323 Score = 26.3 bits (58), Expect = 7.1 Identities = 10/28 (35%), Positives = 16/28 (57%) Query: 189 AGADLLVVGSSFFNQKGEISYAKRLNDL 216 GA LL+ G++ F+ GE+ R D+ Sbjct: 295 CGAALLLTGNNIFSINGELKPGVRTPDI 322 >gnl|CDD|182257 PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional. Length = 267 Score = 26.1 bits (57), Expect = 7.5 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 92 HPESSPHIRRSLRTIHAMGKKTG-VAINPE 120 HPE I S+R I A GK G +A++P+ Sbjct: 192 HPEVQRIIETSIRRIRAAGKAAGFLAVDPD 221 >gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated. Length = 479 Score = 26.0 bits (58), Expect = 7.9 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Query: 147 GQQLIESTIPKIRQAKALIGKRSISLEVDGG-VTSRNIKSLVQAGADLLVVG 197 G Q E + +R +AL I V G VT+ + LV+AGAD++ VG Sbjct: 250 GHQ--EKMLEALRAVRALDPGVPI---VAGNVVTAEGTRDLVEAGADIVKVG 296 >gnl|CDD|178363 PLN02763, PLN02763, hydrolase, hydrolyzing O-glycosyl compounds. Length = 978 Score = 26.0 bits (57), Expect = 8.3 Identities = 12/23 (52%), Positives = 14/23 (60%) Query: 75 DSHINIIADAGCDIITFHPESSP 97 +S I IIA A +ITF P SP Sbjct: 144 ESIIRIIAPASYPVITFGPFPSP 166 >gnl|CDD|180985 PRK07455, PRK07455, keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase; Provisional. Length = 187 Score = 25.8 bits (57), Expect = 8.6 Identities = 12/36 (33%), Positives = 19/36 (52%) Query: 169 SISLEVDGGVTSRNIKSLVQAGADLLVVGSSFFNQK 204 I L GGVT N ++ +QAGA + + F ++ Sbjct: 152 HIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFPKE 187 >gnl|CDD|162966 TIGR02666, moaA, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. Length = 334 Score = 26.0 bits (58), Expect = 8.8 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 146 GGQQLIESTIPK-IRQAKALIGKRSISLEVDGGVTSRNIKSLVQAGAD 192 GG+ L+ + + + + AL G I+L +G + +R+ K L +AG Sbjct: 67 GGEPLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLK 114 >gnl|CDD|180667 PRK06718, PRK06718, precorrin-2 dehydrogenase; Reviewed. Length = 202 Score = 25.8 bits (57), Expect = 9.0 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 10/60 (16%) Query: 174 VDGG-VTSRNIKSLVQAGADLLVVGSSF------FNQKGEISYAKRL---NDLKKSALAI 223 V GG V R +L++ GA ++V+ ++G+I + ++ +D+ + L I Sbjct: 16 VGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVI 75 >gnl|CDD|148572 pfam07034, ORC3_N, Origin recognition complex (ORC) subunit 3 N-terminus. This family represents the N-terminus (approximately 300 residues) of subunit 3 of the eukaryotic origin recognition complex (ORC). Origin recognition complex (ORC) is composed of six subunits that are essential for cell viability. They collectively bind to the autonomously replicating sequence (ARS) in a sequence-specific manner and lead to the chromatin loading of other replication factors that are essential for initiation of DNA replication. Length = 313 Score = 25.8 bits (57), Expect = 9.0 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 13/66 (19%) Query: 67 CHLMISSIDSHINIIADAGC-----DIITFHPESSPHIRRSLRTIHAMGKKTGVAIN-PE 120 + I SHI + D ++ F IR S + + + T + E Sbjct: 35 YQRLWEKIKSHIERLQDESNAKIFDQLLDF-------IRESHASRQSEARDTESEMRARE 87 Query: 121 TPVAIL 126 P A L Sbjct: 88 IPTAAL 93 >gnl|CDD|177932 PLN02295, PLN02295, glycerol kinase. Length = 512 Score = 25.8 bits (57), Expect = 9.2 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%) Query: 172 LEVDGGVTSRNIKSLVQAGADLL 194 L VDGG T+ N+ L+Q ADLL Sbjct: 416 LRVDGGATANNL--LMQIQADLL 436 >gnl|CDD|180898 PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed. Length = 752 Score = 25.8 bits (58), Expect = 10.0 Identities = 10/20 (50%), Positives = 15/20 (75%) Query: 157 KIRQAKALIGKRSISLEVDG 176 K+R+A L+ +R+ LEVDG Sbjct: 644 KMREAVELLRERAPDLEVDG 663 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.137 0.383 Gapped Lambda K H 0.267 0.0634 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,677,263 Number of extensions: 236588 Number of successful extensions: 661 Number of sequences better than 10.0: 1 Number of HSP's gapped: 635 Number of HSP's successfully gapped: 75 Length of query: 224 Length of database: 5,994,473 Length adjustment: 90 Effective length of query: 134 Effective length of database: 4,049,753 Effective search space: 542666902 Effective search space used: 542666902 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.2 bits)