BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate
3-epimerase protein [Candidatus Liberibacter asiaticus str. psy62]
(224 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate 3-epimerase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 224
Score = 451 bits (1161), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY 60
MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY
Sbjct: 1 MTPSIQIVPSILAADFSRLGEEISNITKAGAKQIHFDVMDGCFVPNISFGADVIRSLRSY 60
Query: 61 SDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPE 120
SDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPE
Sbjct: 61 SDSVFDCHLMISSIDSHINIIADAGCDIITFHPESSPHIRRSLRTIHAMGKKTGVAINPE 120
Query: 121 TPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS 180
TPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS
Sbjct: 121 TPVAILEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAKALIGKRSISLEVDGGVTS 180
Query: 181 RNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSALAID 224
RNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSALAID
Sbjct: 181 RNIKSLVQAGADLLVVGSSFFNQKGEISYAKRLNDLKKSALAID 224
>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 429
Score = 25.4 bits (54), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 49 FGADVIRSLRSYSDSVFDCHL----MISSIDSHINIIADAGCDIITFHPESSPHIRRSLR 104
F + +L +S DC + + S+D+ NII +IT S H +
Sbjct: 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDA-TNIIEKVAVSVIT--SISLDHEKILGN 160
Query: 105 TIHAMGKKTGVAINPETPVAILEDVIDEIDMILI 138
T+ A+ K I P PV I V DE+ IL+
Sbjct: 161 TVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILV 194
>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 869
Score = 23.9 bits (50), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 107 HAMGKKTGVAINPETPVAILEDVIDEIDMILIMTVNP 143
+ +G+ G+ I E I+ + ID+I+ IL+ T P
Sbjct: 223 NWIGRSEGMEIRWE----IVSNTIDQIEEILVYTTRP 255
>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 963
Score = 23.5 bits (49), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 200 FFNQKGEISYAKRLND 215
F+N+KGEI K +ND
Sbjct: 509 FYNEKGEILLDKAIND 524
>gi|254780161|ref|YP_003064574.1| phytoene synthase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 299
Score = 23.1 bits (48), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 44 VPNISFGADVIRS--LRSYSDSVFDC 67
+PN F D+I + SY+DS+FDC
Sbjct: 112 LPNQYF-LDMIEAHFFDSYNDSIFDC 136
>gi|254780659|ref|YP_003065072.1| hypothetical protein CLIBASIA_02730 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 274
Score = 23.1 bits (48), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 6/36 (16%), Positives = 22/36 (61%)
Query: 177 GVTSRNIKSLVQAGADLLVVGSSFFNQKGEISYAKR 212
G+T + +++ G D++ G+ ++++ + +++R
Sbjct: 46 GITEKIFCEMMETGIDVITTGNHVWDKREALVFSQR 81
>gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 282
Score = 22.3 bits (46), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 126 LEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK 162
L ++ D+IL GQ+ + TIP +++A+
Sbjct: 8 LRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEAR 44
>gi|254780762|ref|YP_003065175.1| recombination protein RecR [Candidatus Liberibacter asiaticus str.
psy62]
Length = 201
Score = 21.9 bits (45), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 134 DMILIMTVNPGFGGQQLIESTIPKIRQAKALIG 166
++I I+ PGFG + +T+ +++ + L+G
Sbjct: 12 NLIKILARIPGFGPRSARRATLHLVKKKEQLLG 44
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.137 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,166
Number of Sequences: 1233
Number of extensions: 5612
Number of successful extensions: 28
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 13
length of query: 224
length of database: 328,796
effective HSP length: 71
effective length of query: 153
effective length of database: 241,253
effective search space: 36911709
effective search space used: 36911709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)