HHsearch alignment for GI: 254780976 and conserved domain: COG1940

>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].
Probab=95.10  E-value=0.24  Score=28.83  Aligned_cols=108  Identities=13%  Similarity=0.180  Sum_probs=62.5

Q ss_pred             CCCCCEEEEECCCCEEEEEEEECCCCE-ECCCEEEECCCCC-HHHHHHHH----HHHHH----CCCEEEEEECCCCCCCC
Q ss_conf             899839999868876899963076511-0121011047741-56898999----98651----67758997213578888
Q gi|254780976|r   14 KPNQPIASIDLGTKRIGLAISDPGRRF-AHPRPFLVRKKVT-QTALELLS----FITTE----NIAAFIIGLPLNMNGSE   83 (160)
Q Consensus        14 ~~~~riLgiD~G~kriGiAisd~~~~~-a~Pl~~i~~~~~~-~~~~~l~~----ii~e~----~i~~iVvGlP~~~~g~~   83 (160)
T Consensus         3 ~~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iGIgi~~pg~~~~~~   82 (314)
T COG1940           3 PEAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLKQAQGRVAIIGIGIPGPGDVDNGT   82 (314)
T ss_pred             CCCEEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCC
T ss_conf             87629999998897899999937997898899877888845679999999999998752767756999997646126873


Q ss_pred             ----CHHHHHH--HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             ----8447999--99999998404899779983671679999999
Q gi|254780976|r   84 ----GPRVHST--RAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL  122 (160)
Q Consensus        84 ----~~~~~~v--~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~l  122 (160)
T Consensus        83 ~~~~~~~~~~~~~~~l~~~L-~~~~~~Pv~veNDan~aAlaE~~~  126 (314)
T COG1940          83 VIVPAPNLGWWNGVDLAEEL-EARLGLPVFVENDANAAALAEAWF  126 (314)
T ss_pred             EEECCCCCCCCCCCCHHHHH-HHHHCCCEEEECCHHHHHHHHHHH
T ss_conf             67425766544467799999-998899879925199999999872