HHsearch alignment for GI: 254780976 and conserved domain: COG1940
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].
Probab=95.10 E-value=0.24 Score=28.83 Aligned_cols=108 Identities=13% Similarity=0.180 Sum_probs=62.5
Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCCE-ECCCEEEECCCCC-HHHHHHHH----HHHHH----CCCEEEEEECCCCCCCC
Q ss_conf 899839999868876899963076511-0121011047741-56898999----98651----67758997213578888
Q gi|254780976|r 14 KPNQPIASIDLGTKRIGLAISDPGRRF-AHPRPFLVRKKVT-QTALELLS----FITTE----NIAAFIIGLPLNMNGSE 83 (160)
Q Consensus 14 ~~~~riLgiD~G~kriGiAisd~~~~~-a~Pl~~i~~~~~~-~~~~~l~~----ii~e~----~i~~iVvGlP~~~~g~~ 83 (160)
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iGIgi~~pg~~~~~~ 82 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLKQAQGRVAIIGIGIPGPGDVDNGT 82 (314)
T ss_pred CCCEEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCC
T ss_conf 87629999998897899999937997898899877888845679999999999998752767756999997646126873
Q ss_pred ----CHHHHHH--HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
Q ss_conf ----8447999--99999998404899779983671679999999
Q gi|254780976|r 84 ----GPRVHST--RAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 (160)
Q Consensus 84 ----~~~~~~v--~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~l 122 (160)
T Consensus 83 ~~~~~~~~~~~~~~~l~~~L-~~~~~~Pv~veNDan~aAlaE~~~ 126 (314)
T COG1940 83 VIVPAPNLGWWNGVDLAEEL-EARLGLPVFVENDANAAALAEAWF 126 (314)
T ss_pred EEECCCCCCCCCCCCHHHHH-HHHHCCCEEEECCHHHHHHHHHHH
T ss_conf 67425766544467799999-998899879925199999999872