HHsearch alignment for GI: 254780976 and conserved domain: COG2183

>COG2183 Tex Transcriptional accessory protein [Transcription].
Probab=97.41  E-value=0.0035  Score=39.92  Aligned_cols=104  Identities=18%  Similarity=0.255  Sum_probs=69.8

Q ss_pred             CHHHHHHHCCCCC-CEEEEECCCCE-EEEEEEECCCCEECCCEEEECC---CCCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             8899998358998-39999868876-8999630765110121011047---74156898999986516775899721357
Q gi|254780976|r    5 LIEDLVKSLKPNQ-PIASIDLGTKR-IGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLPLNM   79 (160)
Q Consensus         5 ~~~~~~~~~~~~~-riLgiD~G~kr-iGiAisd~~~~~a~Pl~~i~~~---~~~~~~~~l~~ii~e~~i~~iVvGlP~~~   79 (160)
T Consensus       317 nL~~lLl~aP~~~~~~lglDPg~rtG~k~Avvd~tGk~l~~~~Iyp~~p~~~~~~~~~~l~~l~~~~~Ve~iaIG-----  391 (780)
T COG2183         317 NLKDLLLAAPAKPKATLGLDPGFRTGCKVAVVDDTGKLLDTATIYPHPPVNQSDKAEATLKDLIRKYKVELIAIG-----  391 (780)
T ss_pred             HHHHHHHCCCCCCCCEEECCCCCCCCCEEEEECCCCCEECEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEE-----
T ss_conf             889987248888860120487630130799983788555316997279754157899999999998371079873-----


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHC--CCCCEEEECCCCCHH
Q ss_conf             8888844799999999998404--899779983671679
Q gi|254780976|r   80 NGSEGPRVHSTRAFVHNMIDRK--VYVPFVFWDERLTTV  116 (160)
Q Consensus        80 ~g~~~~~~~~v~~f~~~L~~~~--~~l~v~~~DEr~TS~  116 (160)
T Consensus       392 ngTaSr---ete~fv~~vl~~~~~~~~~~viVsEagAsv  427 (780)
T COG2183         392 NGTASR---ETEKFVADVLKELPKEKVLKVIVSEAGASV  427 (780)
T ss_pred             CCCCCH---HHHHHHHHHHHHCCCCCCCEEEECCCCCCH
T ss_conf             687655---479999999984667898679972653102