Query gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus str. psy62] Match_columns 160 No_of_seqs 112 out of 1903 Neff 6.3 Searched_HMMs 23785 Date Tue May 31 23:33:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780976.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1vhx_A Putative holliday junct 100.0 1.3E-43 0 283.2 15.6 142 16-158 2-145 (150) 2 1nu0_A Hypothetical protein YQ 100.0 5.8E-43 0 279.3 10.7 136 16-152 2-137 (138) 3 1iv0_A Hypothetical protein; r 100.0 8.2E-31 3.4E-35 205.8 8.9 98 17-116 1-98 (98) 4 1hjr_A Holliday junction resol 97.8 0.00093 3.9E-08 42.1 12.7 100 18-122 2-110 (158) 5 3bzc_A TEX; helix-turn-helix, 97.6 0.0011 4.6E-08 41.6 11.4 134 6-154 317-463 (785) 6 2gup_A ROK family protein; sug 96.1 0.011 4.5E-07 35.6 5.8 99 17-118 4-110 (292) 7 3lm2_A Putative kinase; struct 96.0 0.01 4.4E-07 35.7 5.5 63 13-77 2-64 (226) 8 3htv_A D-allose kinase, alloki 95.3 0.14 6E-06 28.8 9.0 94 17-111 7-116 (310) 9 2ap1_A Putative regulator prot 95.0 0.096 4E-06 29.9 7.5 99 12-111 19-129 (327) 10 3epq_A Putative fructokinase; 94.8 0.1 4.2E-06 29.8 7.1 103 17-121 3-116 (302) 11 1dkg_D Molecular chaperone DNA 93.3 0.042 1.8E-06 32.0 2.8 23 16-38 1-23 (383) 12 3eo3_A Bifunctional UDP-N-acet 93.3 0.44 1.8E-05 25.9 8.2 106 14-120 17-139 (333) 13 1woq_A Inorganic polyphosphate 92.9 0.25 1E-05 27.4 6.2 107 13-120 8-132 (267) 14 1sz2_A Glucokinase, glucose ki 92.6 0.54 2.3E-05 25.3 7.7 66 17-82 14-81 (332) 15 2qm1_A Glucokinase; alpha-beta 92.3 0.13 5.4E-06 29.1 4.1 103 17-121 6-127 (326) 16 3mcp_A Glucokinase; structural 92.2 0.28 1.2E-05 27.1 5.7 97 14-111 6-117 (366) 17 1z05_A Transcriptional regulat 90.4 0.38 1.6E-05 26.3 4.9 106 14-121 105-227 (429) 18 3i33_A Heat shock-related 70 k 90.3 0.15 6.4E-06 28.7 2.8 23 16-38 22-44 (404) 19 2q2r_A Glucokinase 1, putative 90.3 0.96 4E-05 23.8 7.9 73 4-76 12-98 (373) 20 1z6r_A MLC protein; transcript 89.2 0.74 3.1E-05 24.5 5.6 107 14-121 82-205 (406) 21 2v7y_A Chaperone protein DNAK; 88.7 0.4 1.7E-05 26.1 4.0 23 16-38 1-23 (509) 22 1hux_A Activator of (R)-2-hydr 88.2 1.4 5.8E-05 22.9 7.0 51 17-67 3-53 (270) 23 2ews_A Pantothenate kinase; PA 87.9 1.3 5.4E-05 23.0 6.2 50 20-76 23-72 (287) 24 2hoe_A N-acetylglucosamine kin 87.5 1.2 5.1E-05 23.2 5.8 105 15-121 85-207 (380) 25 2gel_A Putative GRAM negative 86.7 1.7 7E-05 22.4 11.3 91 17-119 1-98 (231) 26 2e2o_A Hexokinase; acetate and 84.6 2.1 8.9E-05 21.7 6.6 61 16-76 1-68 (299) 27 2aa4_A Mannac kinase, putative 84.6 2.1 8.9E-05 21.7 7.1 94 18-112 2-106 (289) 28 2kho_A Heat shock protein 70; 82.7 0.87 3.7E-05 24.1 3.3 24 16-39 1-24 (605) 29 1yuw_A Heat shock cognate 71 k 81.0 1.1 4.8E-05 23.4 3.3 24 15-38 2-25 (554) 30 1jce_A ROD shape-determining p 77.3 1.4 5.7E-05 22.9 2.8 21 16-36 2-22 (344) 31 3d2f_A Heat shock protein homo 77.1 1.9 7.8E-05 22.1 3.4 23 16-38 1-23 (675) 32 1zc6_A Probable N-acetylglucos 76.3 4.1 0.00017 20.0 5.9 29 12-40 5-34 (305) 33 1kcf_A Hypothetical 30.2 KD pr 75.9 4.2 0.00018 20.0 7.7 70 13-82 36-125 (258) 34 2a6a_A Hypothetical protein TM 74.4 4.6 0.00019 19.7 10.7 94 15-119 11-109 (218) 35 2ip4_A PURD, phosphoribosylami 72.9 4.9 0.0002 19.6 4.7 73 54-127 48-137 (417) 36 2zgy_A Plasmid segregation pro 71.1 3.4 0.00014 20.5 3.6 21 19-39 2-22 (320) 37 3iwp_A Copper homeostasis prot 71.0 5.5 0.00023 19.2 7.9 83 40-129 88-182 (287) 38 3g25_A Glycerol kinase; IDP007 70.1 5.8 0.00024 19.1 5.4 26 15-40 3-29 (501) 39 3ifr_A Carbohydrate kinase, FG 67.0 6.7 0.00028 18.7 5.8 28 13-40 3-30 (508) 40 2yrx_A Phosphoribosylglycinami 66.6 6.8 0.00029 18.7 4.6 74 53-127 69-159 (451) 41 3lp8_A Phosphoribosylamine-gly 66.2 6.9 0.00029 18.6 4.4 72 54-127 70-159 (442) 42 2fsj_A Hypothetical protein TA 61.8 5.2 0.00022 19.4 3.0 33 11-44 12-47 (346) 43 1rv3_A Serine hydroxymethyltra 61.5 4.9 0.00021 19.5 2.8 67 8-76 126-202 (483) 44 1twd_A Copper homeostasis prot 59.8 9.1 0.00038 17.9 7.5 83 40-129 50-144 (256) 45 2ch5_A NAGK protein; transfera 56.9 10 0.00043 17.6 11.4 60 17-76 6-79 (347) 46 3agj_B Protein pelota homolog; 56.9 10 0.00043 17.6 10.8 134 11-155 123-269 (358) 47 2vyc_A Biodegradative arginine 56.3 10 0.00044 17.6 6.2 53 61-117 47-99 (755) 48 2w40_A Glycerol kinase, putati 56.2 9.1 0.00038 17.9 3.5 25 16-40 3-27 (503) 49 2dpn_A Glycerol kinase; thermu 55.5 10 0.00042 17.7 3.6 32 16-47 1-36 (495) 50 3h1q_A Ethanolamine utilizatio 55.4 11 0.00045 17.5 9.0 69 17-85 28-109 (272) 51 3n0l_A Serine hydroxymethyltra 54.9 11 0.00046 17.4 5.2 69 8-77 103-174 (417) 52 2qk4_A Trifunctional purine bi 52.3 12 0.00051 17.2 6.1 74 54-128 75-165 (452) 53 3l0q_A Xylulose kinase; xlylul 48.7 14 0.00058 16.8 5.4 32 16-47 4-39 (554) 54 2a7v_A Serine hydroxymethyltra 47.4 11 0.00045 17.5 2.7 65 8-76 136-212 (490) 55 3gbx_A Serine hydroxymethyltra 47.0 15 0.00062 16.6 4.4 67 8-76 108-178 (420) 56 3mjf_A Phosphoribosylamine--gl 46.3 13 0.00056 16.9 3.0 101 54-155 54-181 (431) 57 2yw2_A Phosphoribosylamine--gl 45.4 16 0.00066 16.5 6.3 74 53-127 48-138 (424) 58 2uyt_A Rhamnulokinase; rhamnos 44.4 14 0.0006 16.7 2.9 25 15-39 2-26 (489) 59 3bex_A Type III pantothenate k 41.3 18 0.00076 16.1 6.3 87 13-111 1-90 (249) 60 3js6_A Uncharacterized PARM pr 40.9 14 0.0006 16.7 2.5 23 15-37 2-24 (355) 61 3hz6_A Xylulokinase; xylulose, 40.4 19 0.00078 16.0 5.8 35 14-48 2-40 (511) 62 2vi8_A Serine hydroxymethyltra 40.4 19 0.00078 16.0 4.1 67 9-77 102-173 (405) 63 3h3n_X Glycerol kinase; ATP-bi 40.2 19 0.00079 16.0 6.5 25 16-40 4-28 (506) 64 3ecd_A Serine hydroxymethyltra 38.4 20 0.00084 15.8 5.4 67 8-76 110-181 (425) 65 2zf5_O Glycerol kinase; hypert 37.5 21 0.00087 15.8 6.0 22 18-39 4-25 (497) 66 1yob_A Flavodoxin 2, flavodoxi 36.3 22 0.00091 15.6 4.5 13 69-81 48-60 (179) 67 3oby_A Protein pelota homolog; 33.5 24 0.001 15.4 12.0 138 6-154 116-262 (352) 68 2p3r_A Glycerol kinase; glycer 33.2 24 0.001 15.3 5.1 25 16-40 2-26 (510) 69 2dkj_A Serine hydroxymethyltra 32.8 10 0.00043 17.6 0.7 68 8-76 101-172 (407) 70 2d4w_A Glycerol kinase; alpha 32.5 25 0.001 15.3 4.9 23 18-40 3-25 (504) 71 3h7f_A Serine hydroxymethyltra 29.5 28 0.0012 15.0 4.2 67 8-76 123-194 (447) 72 2vpi_A GMP synthase; guanine m 28.8 9 0.00038 17.9 -0.1 46 14-74 22-74 (218) 73 3i8b_A Xylulose kinase; strain 28.6 29 0.0012 14.9 5.8 52 14-65 2-58 (515) 74 1czn_A Flavodoxin; FMN binding 28.4 29 0.0012 14.8 2.5 13 69-81 48-60 (169) 75 3ll3_A Gluconate kinase; xylul 28.3 29 0.0012 14.8 7.2 26 15-40 2-27 (504) 76 3obw_A Protein pelota homolog; 28.3 29 0.0012 14.8 11.4 128 14-154 145-281 (364) 77 3jvp_A Ribulokinase; PSI-II, N 28.0 30 0.0013 14.8 3.7 20 17-36 5-24 (572) 78 1mjh_A Protein (ATP-binding do 27.7 30 0.0013 14.8 4.3 55 54-113 107-161 (162) 79 2ivn_A O-sialoglycoprotein end 26.0 32 0.0014 14.6 11.2 94 18-120 2-112 (330) 80 3hgm_A Universal stress protei 25.0 34 0.0014 14.5 2.6 23 54-76 97-119 (147) 81 1e4f_T Cell division protein F 24.4 35 0.0015 14.4 3.0 24 11-34 2-25 (419) 82 2rfg_A Dihydrodipicolinate syn 22.7 38 0.0016 14.2 7.3 56 51-111 79-134 (297) 83 3djc_A Type III pantothenate k 21.5 40 0.0017 14.0 9.3 85 18-112 3-92 (266) 84 2z08_A Universal stress protei 20.8 41 0.0017 13.9 3.5 50 55-109 87-136 (137) 85 3mca_B Protein DOM34, elongati 20.7 41 0.0017 13.9 5.1 126 18-154 138-287 (390) 86 1qv9_A F420-dependent methylen 20.4 42 0.0018 13.9 6.3 60 58-128 55-115 (283) 87 1t6c_A Exopolyphosphatase; alp 20.3 42 0.0018 13.9 6.7 131 11-153 132-289 (315) 88 2fcr_A Flavodoxin; electron tr 20.1 43 0.0018 13.9 4.7 17 68-84 46-62 (173) No 1 >1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8 Probab=100.00 E-value=1.3e-43 Score=283.19 Aligned_cols=142 Identities=36% Similarity=0.532 Sum_probs=132.6 Q ss_pred CCCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCH--HHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH Q ss_conf 983999986887689996307651101210110477415--689899998651677589972135788888447999999 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAF 93 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~--~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f 93 (160) +.|+||||||+||||+|+||+.+.+|+|++++.+++... .+.+|.+++++|+|+.||||+|+++||+++++++.++.| T Consensus 2 ~MriLgiD~G~kriGvAisD~~~~~a~pl~~i~~~~~~~~~~~~~i~~ii~e~~i~~iViGlP~~~dg~~~~~~~~v~~f 81 (150) T 1vhx_A 2 SLRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTF 81 (150) T ss_dssp CEEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHH T ss_pred CCEEEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH T ss_conf 86099995289979999956998833560113322345247999999999983999699857846688754889999999 Q ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99998404899779983671679999999986986445464378998999999999686456622 Q gi|254780976|r 94 VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158 (160) Q Consensus 94 ~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~~~~~~~ 158 (160) ++.|. +.+++||++|||||||++|++.+++.|++++++|+.+|++||++|||+|||+.+...|- T Consensus 82 ~~~l~-~~~~l~V~~~DEr~TS~~A~~~l~~~~~~~~k~k~~iD~~AA~iILq~~Ld~~n~g~~~ 145 (150) T 1vhx_A 82 AKVLE-TTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVIDKMAAVMILQGYLDSLNEGGSH 145 (150) T ss_dssp HHHHH-HHHCSCEEEECCSSCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC---- T ss_pred HHHHC-CCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99626-58897568867886599999999976997000441476999999999999876376875 No 2 >1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A Probab=100.00 E-value=5.8e-43 Score=279.32 Aligned_cols=136 Identities=29% Similarity=0.404 Sum_probs=130.7 Q ss_pred CCCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHH Q ss_conf 98399998688768999630765110121011047741568989999865167758997213578888844799999999 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVH 95 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~ 95 (160) .+|+||||||+||||+|+||+.+.+|+|++|+.+++...++..|.+++++|+|++||||+|++++|+++++++.++.|++ T Consensus 2 ~griLgiD~G~kriGlAisd~~~~~a~pl~~i~~~~~~~~~~~l~~~i~e~~~~~iVvG~P~~~~g~~~~~~~~v~~F~~ 81 (138) T 1nu0_A 2 SGTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFAN 81 (138) T ss_dssp CCEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHH T ss_pred CCCEEEEEECCCEEEEEEECCCCCCEECCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHH T ss_conf 97689999378879999947998843041889827746899999998630487299955545778984889999999999 Q ss_pred HHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998404899779983671679999999986986445464378998999999999686 Q gi|254780976|r 96 NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 (160) Q Consensus 96 ~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~ 152 (160) .|.. .+++||++|||||||++|++.+++.|++++++|+.+|++||++|||+|||+. T Consensus 82 ~L~~-~~~i~v~~~DErlTS~eA~~~l~~~~~~~~k~k~~iD~~AA~lILq~~Ld~~ 137 (138) T 1nu0_A 82 RIHG-RFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYMEQG 137 (138) T ss_dssp HHHH-HHCCCEEEEEEECCCCCC-------CCCCCCCHHHHTTHHHHHHHHHHHHTT T ss_pred HHHH-HHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 9998-5099879960764499999999973563210454263999999999999727 No 3 >1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 Probab=99.97 E-value=8.2e-31 Score=205.79 Aligned_cols=98 Identities=32% Similarity=0.568 Sum_probs=93.6 Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 83999986887689996307651101210110477415689899998651677589972135788888447999999999 Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96 (160) Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~ 96 (160) .|+||||||+||||+|+||+.+.+|+|+.++.+++..+++.+|.+++++|+|+.||||+|++|||+++++++.++.|+++ T Consensus 1 MriLglD~G~kriGvAisd~~~~~A~pl~~i~~~~~~~~~~~l~~li~e~~i~~iVvGlP~~~dG~~~~~~~~v~~f~~~ 80 (98) T 1iv0_A 1 MRVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEA 80 (98) T ss_dssp CCEEEEEESSSEEEEEEECSCCSSCCCEEEEECCCHHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHH T ss_pred CCEEEEEECCCEEEEEEECCCCCEEECEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHH T ss_conf 92999980899899999259998781778898258568999999999971857499158977899919899999999999 Q ss_pred HHHHCCCCCEEEECCCCCHH Q ss_conf 98404899779983671679 Q gi|254780976|r 97 MIDRKVYVPFVFWDERLTTV 116 (160) Q Consensus 97 L~~~~~~l~v~~~DEr~TS~ 116 (160) |. . .++||++|||||||+ T Consensus 81 L~-~-~~~pv~~~DErlTSk 98 (98) T 1iv0_A 81 LR-A-RGVEVELWDERFTTK 98 (98) T ss_dssp HH-H-TTCEEEEECCSCCCC T ss_pred HH-H-CCCCEEEECCCCCCC T ss_conf 86-3-799999986898888 No 4 >1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6 Probab=97.75 E-value=0.00093 Score=42.05 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=61.9 Q ss_pred CEEEEECCCCEEEEEEEECCCCEEC--CCEEEECCC------CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCH-HHH Q ss_conf 3999986887689996307651101--210110477------4156898999986516775899721357888884-479 Q gi|254780976|r 18 PIASIDLGTKRIGLAISDPGRRFAH--PRPFLVRKK------VTQTALELLSFITTENIAAFIIGLPLNMNGSEGP-RVH 88 (160) Q Consensus 18 riLgiD~G~kriGiAisd~~~~~a~--Pl~~i~~~~------~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~-~~~ 88 (160) =|||||+|..++|.|+-|..+.-.. -.+++..+. .....+.+.+++++|+|+.+++=-|.-..+..+. ... T Consensus 2 iILGiDPgl~~tG~avid~~~~~~~~i~~g~i~t~~~~~~~Rl~~I~~~l~~ii~~~~pd~vaiE~~f~~~n~~sa~~l~ 81 (158) T 1hjr_A 2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLG 81 (158) T ss_dssp EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHH T ss_pred EEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHH T ss_conf 89998435585689999953987899986689779988799999999999999971397353698988623888999999 Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH Q ss_conf 9999999998404899779983671679999999 Q gi|254780976|r 89 STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 (160) Q Consensus 89 ~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~l 122 (160) .++-.+... -...++|+..+ |-.+.++.. T Consensus 82 ~a~G~i~~~-~~~~~i~i~~~----~P~~vKk~v 110 (158) T 1hjr_A 82 QARGVAIVA-AVNQELPVFEY----AARQVKQTV 110 (158) T ss_dssp HHHHHHHHH-HHTTTCCEEEE----EHHHHHHHH T ss_pred HHHHHHHHH-HHHCCCCCCCC----CHHHHHHHH T ss_conf 999999999-99859960136----889999998 No 5 >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A Probab=97.61 E-value=0.0011 Score=41.62 Aligned_cols=134 Identities=18% Similarity=0.283 Sum_probs=82.4 Q ss_pred HHHHHHHCCCC-CCEEEEECCCC-EEEEEEEECCCCEECCCEEE----ECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 89999835899-83999986887-68999630765110121011----04774156898999986516775899721357 Q gi|254780976|r 6 IEDLVKSLKPN-QPIASIDLGTK-RIGLAISDPGRRFAHPRPFL----VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79 (160) Q Consensus 6 ~~~~~~~~~~~-~riLgiD~G~k-riGiAisd~~~~~a~Pl~~i----~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~ 79 (160) +.+++..-|-+ .++||+|.|.+ -|-+|+-|..+.+--- .++ ++.........|.+++..++|+.|+|| T Consensus 317 L~~lLl~aP~~~~~vlg~dPg~r~g~k~a~vD~~G~vld~-~~iyp~~~~~~~~~a~~~l~~li~~~~~~vIaIG----- 390 (785) T 3bzc_A 317 LHDLLLAAPAGPRATLGLDPGLRTGVKVAVVDATGKLLDT-ATVYPHAPKNQWDQTLAVLAALCAKHQVELIAIG----- 390 (785) T ss_dssp HHHHHTSCCCCSCCEEEEECCSSSCEEEEEECTTSCEEEE-EEECCSGGGCCHHHHHHHHHHHHHHHTCCEEEEE----- T ss_pred HHHHHCCCCCCCCCEEEECCCCCCCEEEEEECCCCCEEEE-EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC----- T ss_conf 9999747888898235547898773599999899987876-7974689742359999999999998299689976----- Q ss_pred CCCCCHHHHHHHHHHHHHHHH--CCCCCEEEECCCCCHH-----HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 888884479999999999840--4899779983671679-----999999986986445464378998999999999686 Q gi|254780976|r 80 NGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTV-----SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 (160) Q Consensus 80 ~g~~~~~~~~v~~f~~~L~~~--~~~l~v~~~DEr~TS~-----~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~ 152 (160) +|+ .+..+..|...++.. ...+++.++||..-|. .|.+.+.+..+..+ -++|=+--||+=|.++ T Consensus 391 ngt---asrete~~v~~li~~~~~~~v~~~~V~E~gAsvYsaS~~A~~EfPdld~~~R------~AVSIaRrlQDPLaEl 461 (785) T 3bzc_A 391 NGT---ASRETDKLAGELIKKYPGMKLTKIMVSEAGASVYSASELAAKEFPELDVSLR------GAVSIARRLQDPLAEL 461 (785) T ss_dssp SST---THHHHHHHHHHHHHHCGGGCCEEEEECCHHHHHHHHSHHHHHHCTTSCHHHH------HHHHHHHHHHCHHHHH T ss_pred CCH---HHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCHHHHHHCCCCCCCHH------HHHHHHHHHCCHHHHH T ss_conf 863---8789999999999856577864898332026776438998855726880156------8887787630869999 Q ss_pred HH Q ss_conf 45 Q gi|254780976|r 153 SF 154 (160) Q Consensus 153 ~~ 154 (160) .. T Consensus 462 vk 463 (785) T 3bzc_A 462 VK 463 (785) T ss_dssp TT T ss_pred HH T ss_conf 72 No 6 >2gup_A ROK family protein; sugar kinase, APC80695, sucrose, structural genomics, PSI, protein structure initiative; HET: SUC; 2.01A {Streptococcus pneumoniae TIGR4} SCOP: c.55.1.10 c.55.1.10 Probab=96.07 E-value=0.011 Score=35.64 Aligned_cols=99 Identities=13% Similarity=0.153 Sum_probs=60.8 Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEEE-CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----CHHHHHH Q ss_conf 83999986887689996307651101210110-47741568989999865167758997213578888-----8447999 Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE-----GPRVHST 90 (160) Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~-~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~-----~~~~~~v 90 (160) ++++|+|.|-.+|=+|+.|..+.+-.- ..++ .+.....+..+.+.+.++++.++.||.|=..|... ++..... T Consensus 4 ~~~~~iDiGGT~ir~~l~d~~g~ii~~-~~~~t~~~~~~~~~~i~~~~~~~~i~~Igia~pG~vd~~~g~i~~~~~~~~~ 82 (292) T 2gup_A 4 MTIATIDIGGTGIKFASLTPDGKILDK-TSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYI 82 (292) T ss_dssp CCEEEEEEETTEEEEEEECTTCCEEEE-EEECCCSSHHHHHHHHHHHHTTSCCSEEEEEESSEECTTTCBEESCCSSGGG T ss_pred CEEEEEEECCHHEEEEEECCCCCEEEE-EEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCC T ss_conf 889999977024699999189969999-9972876599999999998665278679996067521566720243333333 Q ss_pred --HHHHHHHHHHCCCCCEEEECCCCCHHHH Q ss_conf --9999999840489977998367167999 Q gi|254780976|r 91 --RAFVHNMIDRKVYVPFVFWDERLTTVSA 118 (160) Q Consensus 91 --~~f~~~L~~~~~~l~v~~~DEr~TS~~A 118 (160) ..+ ..+.+ .+++||.+.++--.-..| T Consensus 83 ~~~~~-~~~~~-~~~~pv~~~ND~~a~a~a 110 (292) T 2gup_A 83 HGFSW-YEALS-SYQLPVHLENDANCVGLS 110 (292) T ss_dssp SSSBH-HHHTG-GGCCCEEEEEHHHHHHHH T ss_pred CCCCH-HHHHH-HCCCCEEEECHHHHHHHH T ss_conf 57326-89998-619949982167899899 No 7 >3lm2_A Putative kinase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, transferase; HET: MSE; 1.70A {Agrobacterium tumefaciens} Probab=96.02 E-value=0.01 Score=35.73 Aligned_cols=63 Identities=13% Similarity=0.229 Sum_probs=49.6 Q ss_pred CCCCCCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 58998399998688768999630765110121011047741568989999865167758997213 Q gi|254780976|r 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 (160) Q Consensus 13 ~~~~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~ 77 (160) |...+.+||+|.|-.++-+|+.|....+-.|.. .....+.....+.++++++.+..+-||.|= T Consensus 2 m~~~~~vlgiDIGGT~i~~~l~d~~~~~~~~t~--~~~~~~~~~~~i~~~i~~~~~~~igi~~pG 64 (226) T 3lm2_A 2 MAEDQTVLAIDIGGSHVKIGLSTDGEERKVESG--KTMTGPEMVAAVTAMAKDMTYDVIAMGYPG 64 (226) T ss_dssp CGGGCCEEEEEECSSEEEEEETTTCCEEEEECC--TTCCHHHHHHHHHHHTTTCCCSEEEEEESS T ss_pred CCCCCEEEEEEECCCEEEEEEEECCCCEEEECC--CCCCHHHHHHHHHHHHHHHCCCCCEEECCC T ss_conf 987885999997885699999979986899658--999979999999999975032351895168 No 8 >3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} Probab=95.26 E-value=0.14 Score=28.83 Aligned_cols=94 Identities=11% Similarity=0.199 Sum_probs=53.0 Q ss_pred CCEEEEECCCCEEEEEEEECCCCE-ECCCEEEECCCCCHHHHHHHHHH----HHH--CCCEEEEEECCCCC---CCC--C Q ss_conf 839999868876899963076511-01210110477415689899998----651--67758997213578---888--8 Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRF-AHPRPFLVRKKVTQTALELLSFI----TTE--NIAAFIIGLPLNMN---GSE--G 84 (160) Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~-a~Pl~~i~~~~~~~~~~~l~~ii----~e~--~i~~iVvGlP~~~~---g~~--~ 84 (160) .-++|||+|..++=+|+.|..+.+ +......+.......+..+.+.+ +++ .+.++.||.|=..| |.. + T Consensus 7 ~~v~GIDiGgt~i~~~l~d~~g~i~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~gIgia~pG~vd~~~g~v~~~ 86 (310) T 3htv_A 7 NVVAGVDMGATHIRFCLRTAEGETLHCEKKRTAEVIAPGLVSGIGEMIDEQLRRFNARCHGLVMGFPALVSKDKRTIIST 86 (310) T ss_dssp EEEEEEEECSSEEEEEEEETTSCEEEEEEEEHHHHHTTCHHHHHHHHHHHHHHHHTEEEEEEEEEESSCBCTTSSCBCSC T ss_pred CEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCCEEEEC T ss_conf 89999997666799999929998999999618887889999999999999998759973079998263086799849956 Q ss_pred ---HHHH-HHHHHHHHHHHHCCCCCEEEECC Q ss_conf ---4479-99999999984048997799836 Q gi|254780976|r 85 ---PRVH-STRAFVHNMIDRKVYVPFVFWDE 111 (160) Q Consensus 85 ---~~~~-~v~~f~~~L~~~~~~l~v~~~DE 111 (160) ++.. .-..+.+.| ++.+++||.+.+. T Consensus 87 ~~~~~~~~~~~~l~~~l-~~~~~~pv~i~ND 116 (310) T 3htv_A 87 PNLPLTAADLYDLADKL-ENTLNCPVEFSRD 116 (310) T ss_dssp CSSSCCHHHHTTHHHHH-HHHHTSCEEEEEH T ss_pred CCCCCCCCCCCCHHHHH-HHHHCCCEEEECC T ss_conf 87786444477679998-7862985799553 No 9 >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 Probab=95.04 E-value=0.096 Score=29.89 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=58.1 Q ss_pred HCCCCCCEEEEECCCCEEEEEEEECCCCEECCCEE-EECCCCCHHHHHHHHHHHH----H-CCCEEEEEECCCCCCCCC- Q ss_conf 35899839999868876899963076511012101-1047741568989999865----1-677589972135788888- Q gi|254780976|r 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITT----E-NIAAFIIGLPLNMNGSEG- 84 (160) Q Consensus 12 ~~~~~~riLgiD~G~kriGiAisd~~~~~a~Pl~~-i~~~~~~~~~~~l~~ii~e----~-~i~~iVvGlP~~~~g~~~- 84 (160) +.+++..+||||.|-.+|=+|+.|..+.+-.-..+ .+..+....+..+.+++++ + .+..+.||.|-..|...+ T Consensus 19 ~~~~~~~ylGiDiGGT~i~~al~d~~G~il~~~~~~t~~~~~~~~l~~i~~~i~~~~~~~~~~~~igi~~~G~vd~~~g~ 98 (327) T 2ap1_A 19 YFQSNAMYYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHTSYSAFLDAVCELVEEADQRFGVKGSVGIGIPGMPETEDGT 98 (327) T ss_dssp ----CCEEEEEEECSSEEEEEEEETTCCEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHTSCCEEEEEESSBSCCTTSC T ss_pred EECCCCEEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCE T ss_conf 77589579999967224999999199989999998699999999999999999999886388728999978865467864 Q ss_pred ----HHH-HHHHHHHHHHHHHCCCCCEEEECC Q ss_conf ----447-999999999984048997799836 Q gi|254780976|r 85 ----PRV-HSTRAFVHNMIDRKVYVPFVFWDE 111 (160) Q Consensus 85 ----~~~-~~v~~f~~~L~~~~~~l~v~~~DE 111 (160) ... -.-..+...| ++.+++|+.+.+. T Consensus 99 i~~~~~~~~~~~~l~~~L-~~~~~~~v~~~nD 129 (327) T 2ap1_A 99 LYAANVPAASGKPLRADL-SARLDRDVRLDND 129 (327) T ss_dssp CBCTTCTTTTTSCHHHHH-HHHHTSCEEEEEH T ss_pred EECCCCCCCCCCHHHHHH-HHHHCCCEEEECC T ss_conf 834667332466099999-9987998798247 No 10 >3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3lm9_A* Probab=94.81 E-value=0.1 Score=29.77 Aligned_cols=103 Identities=11% Similarity=0.154 Sum_probs=65.2 Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC----------CHH Q ss_conf 8399998688768999630765110121011047741568989999865167758997213578888----------844 Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE----------GPR 86 (160) Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~----------~~~ 86 (160) .-++|||.|-.++=+|+.|..+.+-.- ..++....++.+..+.+.++++++..+-||.|--.|... .+. T Consensus 3 ~l~~GiDiGgT~i~~~l~d~~G~il~~-~~~pt~~~~~~~~~i~~~~~~~~i~~igi~~pG~vd~~~~~~~~g~i~~~~~ 81 (302) T 3epq_A 3 AMLGGIEAGGTXFVCAVGREDGTIIDR-IEFPTXMPDETIEXVIQYFSQFSLQAIGIGSFGPVDNDXTSQTYGTITATPX 81 (302) T ss_dssp CCEEEEEECSSEEEEEEECTTSCEEEE-EEEECCCHHHHHHHHHHHHTTSCCSEEEEEECSSEECCTTSTTTTEECCCSS T ss_pred CEEEEEEECCCEEEEEEECCCCCEEEE-EEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEECCCC T ss_conf 779999967747999999699939999-9966899799999999999872576547911142235666410127934898 Q ss_pred HH-HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH Q ss_conf 79-999999999840489977998367167999999 Q gi|254780976|r 87 VH-STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 (160) Q Consensus 87 ~~-~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~ 121 (160) .. .-.++.+.| ++.+++||.+.+.--...-|+.. T Consensus 82 ~~w~~~~l~~~l-~~~~~~pv~v~NDa~aaal~E~~ 116 (302) T 3epq_A 82 AGWRHYPFLQTV-XNEMXIPVGFSTDVNAAALGEFL 116 (302) T ss_dssp TTTBTCCHHHHH-HHHHCSCEEEEEHHHHHHHHHHH T ss_pred CCCCCCCHHHHH-HHCCCCCEEEECCHHHHHHHHHH T ss_conf 774788558888-64245358997458899999997 No 11 >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Probab=93.29 E-value=0.042 Score=32.03 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=19.8 Q ss_pred CCCEEEEECCCCEEEEEEEECCC Q ss_conf 98399998688768999630765 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGR 38 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~ 38 (160) |+.|+|||||+.++++|+.++.. T Consensus 1 Ms~viGIDfGTt~s~va~~~~~~ 23 (383) T 1dkg_D 1 MGKIIGIDLGTTNSCVAIMDGTT 23 (383) T ss_dssp --CCCEEECCSSEEEEEEEETTE T ss_pred CCCEEEEECCCCCEEEEEEECCE T ss_conf 99999998560288999999999 No 12 >3eo3_A Bifunctional UDP-N-acetylglucosamine 2- epimerase/N-acetylmannosamine kinase; non-protein kinase, sialic acid biosynthesis; 2.84A {Homo sapiens} Probab=93.28 E-value=0.44 Score=25.88 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=56.6 Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHH----HHHHH-----HCCCEEEEEECCCCCCCCC Q ss_conf 89983999986887689996307651101210110477415689899----99865-----1677589972135788888 Q gi|254780976|r 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL----SFITT-----ENIAAFIIGLPLNMNGSEG 84 (160) Q Consensus 14 ~~~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~----~ii~e-----~~i~~iVvGlP~~~~g~~~ 84 (160) ..-...||||.|-.++=+|+.|..+.+-.-............+..+. +.+.+ ..+.++-||.|=..|...+ T Consensus 17 ~~~~~~lGIDiGGT~~~~al~d~~G~vl~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~igia~pG~vd~~~g 96 (333) T 3eo3_A 17 QGTLSALAVDLGGTNLRVAIVSMKGEIVKKYTQFNPKTYEERINLILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREG 96 (333) T ss_dssp --CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEC--------- T ss_pred CCCCEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC T ss_conf 88854999997711399999959997999999689999789999999999999998612478667999942874656658 Q ss_pred HHHHH--------HHHHHHHHHHHCCCCCEEEECCCCCHHHHHH Q ss_conf 44799--------9999999984048997799836716799999 Q gi|254780976|r 85 PRVHS--------TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 (160) Q Consensus 85 ~~~~~--------v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~ 120 (160) ..... -.+|.+.| ++.+++||.+.+.--....|+. T Consensus 97 ~v~~s~~~~~~~~~~~l~~~l-~~~~~~pv~v~ND~~a~a~aE~ 139 (333) T 3eo3_A 97 IVLHSTKLIQEWNSVDLRTPL-SDTLHLPVWVDNDGNCAALAER 139 (333) T ss_dssp ---------------CCHHHH-HHHHCSCEEEECHHHHHHHHHH T ss_pred CEECCCCCCCCCCCCCHHHHH-HHHCCCCEEECCCCCCCHHHHH T ss_conf 243035554201377555666-5323983766465320016887 No 13 >1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10 Probab=92.88 E-value=0.25 Score=27.41 Aligned_cols=107 Identities=12% Similarity=0.055 Sum_probs=57.5 Q ss_pred CCCCCCEEEEECCCCEEEEEEEECC-CCEECCCEEEE--C-CCCCHHHHHHHHHHHHH--------CCCEEEEEECCCCC Q ss_conf 5899839999868876899963076-51101210110--4-77415689899998651--------67758997213578 Q gi|254780976|r 13 LKPNQPIASIDLGTKRIGLAISDPG-RRFAHPRPFLV--R-KKVTQTALELLSFITTE--------NIAAFIIGLPLNMN 80 (160) Q Consensus 13 ~~~~~riLgiD~G~kriGiAisd~~-~~~a~Pl~~i~--~-~~~~~~~~~l~~ii~e~--------~i~~iVvGlP~~~~ 80 (160) ...+..|||||+|-.+|=+|+.|.. ..+..-...++ . ...+.....+..++.+. .+.++-||.|-..| T Consensus 8 ~~~~~~viGiDiGGT~i~~~l~d~~~~~i~~~~~~~~t~~~~~~~~i~~~i~~~i~~l~~~~~~~~~~~gIGi~~PG~vd 87 (267) T 1woq_A 8 SHKNAPLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPATPESVAEAVALVVAELSARPEAPAAGSPVGVTFPGIIQ 87 (267) T ss_dssp ---CCCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHTSTTCCCTTCCEEEEESSCEE T ss_pred CCCCCCEEEEEECCCEEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEE T ss_conf 48999899999877659999998999989999999678999999999999999999987502677645213226887055 Q ss_pred CCC-----CHHHHH-HHHHHHHHHHHCCCCCEEEECCCCCHHHHHH Q ss_conf 888-----844799-9999999984048997799836716799999 Q gi|254780976|r 81 GSE-----GPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 (160) Q Consensus 81 g~~-----~~~~~~-v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~ 120 (160) ... +..... -..+.+.| ++.+++||++.+.--...-|+. T Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~pV~v~NDanaaAlaE~ 132 (267) T 1woq_A 88 HGVVHSAANVDKSWLNTDIDALL-TARLGRPVEVINDADAAGLAEA 132 (267) T ss_dssp TTEECCCTTSCGGGTTCBHHHHH-HHHHTSCEEEEEHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCCCHHHHH-HHHHCCCEEEECCCCHHHHHHH T ss_conf 40056515765343588578999-9987999898124213688886 No 14 >1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A* Probab=92.63 E-value=0.54 Score=25.31 Aligned_cols=66 Identities=11% Similarity=0.078 Sum_probs=45.3 Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHH--CCCEEEEEECCCCCCC Q ss_conf 83999986887689996307651101210110477415689899998651--6775899721357888 Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE--NIAAFIIGLPLNMNGS 82 (160) Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~--~i~~iVvGlP~~~~g~ 82 (160) +-+|++|.|-.+|=+|+.|+....-......+..+.......|.+++.++ ++..+.||.|=..++. T Consensus 14 ~y~L~~DIGGT~ir~alvd~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~igI~~pGpv~~~ 81 (332) T 1sz2_A 14 KYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGCIAIACPITGD 81 (332) T ss_dssp CEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHSCCCCCEEEEEESSCCCSS T ss_pred CEEEEEEECHHHHHHEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC T ss_conf 28999998815432556989999897889878987647999999999865998775999902564287 No 15 >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis V583} Probab=92.33 E-value=0.13 Score=29.11 Aligned_cols=103 Identities=13% Similarity=0.189 Sum_probs=52.4 Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEEE---CCCCCH----HHHHHHHHHHHH-----CCCEEEEEEC--CCCCCC Q ss_conf 83999986887689996307651101210110---477415----689899998651-----6775899721--357888 Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQ----TALELLSFITTE-----NIAAFIIGLP--LNMNGS 82 (160) Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~---~~~~~~----~~~~l~~ii~e~-----~i~~iVvGlP--~~~~g~ 82 (160) .+|||||.|-.++=+++.|..+.+-.- ..++ ...... ....+..++++. ++..+-++.| .+.+.. T Consensus 6 ~~vLgiD~GgT~~~~~l~d~~G~il~~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~igi~~~G~vd~~~~ 84 (326) T 2qm1_A 6 KKIIGIDLGGTTIKFAILTTDGVVQQK-WSIETNILEDGKHIVPSIIESIRHRIDLYNMKKEDFVGIGMGTPGSVDIEKG 84 (326) T ss_dssp CEEEEEEECSSEEEEEEEETTCCEEEE-EEEECCCTTTTTTHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESSEEETTTT T ss_pred CEEEEEEECCCEEEEEEECCCCCEEEE-EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCC T ss_conf 859999987342899999399979999-9971798889899999999999999997157656713785224330506668 Q ss_pred C---CHHHH--HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH Q ss_conf 8---84479--999999999840489977998367167999999 Q gi|254780976|r 83 E---GPRVH--STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 (160) Q Consensus 83 ~---~~~~~--~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~ 121 (160) . ++... ....+.+.+ .+.+++||.+.++-....-|+.. T Consensus 85 ~i~~~~~l~~~~~~~l~~~l-~~~~~~~v~v~ND~~a~a~ae~~ 127 (326) T 2qm1_A 85 TVVGAYNLNWTTVQPVKEQI-ESALGIPFALDNDANVAALGERW 127 (326) T ss_dssp EEECBGGGTBCSCBCHHHHH-HHHHCSCEEEEEHHHHHHHHHHH T ss_pred CEEEECCCCCCCCCHHHHHH-HHHHCCCEEECCHHHHHHHHHHH T ss_conf 07630356744443389999-99879988985658899999998 No 16 >3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis} Probab=92.21 E-value=0.28 Score=27.07 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=56.4 Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCCEECCCEEE-ECCCCCHHHHHHHHHHHH------HCCCEEEEEECCCCCCCC--- Q ss_conf 8998399998688768999630765110121011-047741568989999865------167758997213578888--- Q gi|254780976|r 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITT------ENIAAFIIGLPLNMNGSE--- 83 (160) Q Consensus 14 ~~~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i-~~~~~~~~~~~l~~ii~e------~~i~~iVvGlP~~~~g~~--- 83 (160) ..+..+||||.|-.++=+|+.|..+.+..+..+- ........+..+.+.+.+ ..+.++-||.|=..|... T Consensus 6 ~d~~~vlgiDIGGT~i~~al~d~~g~i~~~~~~pt~~~~~~~~l~~i~~~i~~~~~~~~~~i~gIGia~pG~vd~~~G~v 85 (366) T 3mcp_A 6 NDNRIVMTLDAGGTNFVFSAIQGGKEIADPVVLPACADCLDKCLGNLVEGFKAIQAGLPEAPVAISFAFPGPADYQAGII 85 (366) T ss_dssp TCCCEEEEEECSSSEEEEEEEETTEECSCCEEEECCTTCHHHHHHHHHHHHHHHHTTCSSCCCEEEEECCSSEETTTTEE T ss_pred CCCCEEEEEEECCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEECCCCEE T ss_conf 89988999998731499999908995999999758988999999999999999985478987679999267686899989 Q ss_pred --CHHHH---HHHHHHHHHHHHCCCCCEEEECC Q ss_conf --84479---99999999984048997799836 Q gi|254780976|r 84 --GPRVH---STRAFVHNMIDRKVYVPFVFWDE 111 (160) Q Consensus 84 --~~~~~---~v~~f~~~L~~~~~~l~v~~~DE 111 (160) ++... .-..+.+.| ++.+++||+..+. T Consensus 86 ~~~~nl~~~~~~~~l~~~l-~~~~g~pV~i~ND 117 (366) T 3mcp_A 86 GDLPNFPSFRGGVALGPFL-EDIFGIPVFINND 117 (366) T ss_dssp CCCTTCGGGTTCBCHHHHH-HHHHCSCEEEECH T ss_pred EECCCCHHHHCCCCHHHHH-HHHHCCCEEECCC T ss_conf 8278733754597489999-9987888686174 No 17 >1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Probab=90.43 E-value=0.38 Score=26.29 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=57.2 Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCCEECCCEEEE--CCCCCHHH----HHHHHHHHHH-----CCCEEEEEECCCCCCC Q ss_conf 89983999986887689996307651101210110--47741568----9899998651-----6775899721357888 Q gi|254780976|r 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTA----LELLSFITTE-----NIAAFIIGLPLNMNGS 82 (160) Q Consensus 14 ~~~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~--~~~~~~~~----~~l~~ii~e~-----~i~~iVvGlP~~~~g~ 82 (160) +....++|+|+|..++-++++|..+.+-.- ..++ .......+ ..+.+++++. ++.+|.||.|=..|.. T Consensus 105 ~~~~~~iGIdig~~~i~~~l~dl~G~il~~-~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~gIgi~~pG~vd~~ 183 (429) T 1z05_A 105 NLGWQFLSMRLGRGYLTIALHELGGEVLID-TKIDIHEIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSE 183 (429) T ss_dssp CTTEEEEEEEEETTEEEEEEEETTSCEEEE-EEEECCCCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEESSEEETT T ss_pred CCEEEEEEEEECCCEEEEEEECCCCCEEEE-EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCC T ss_conf 880499999989998999998499878999-9834887887899999999999999975766146579999627861688 Q ss_pred CCH-----HHH-HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH Q ss_conf 884-----479-999999999840489977998367167999999 Q gi|254780976|r 83 EGP-----RVH-STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 (160) Q Consensus 83 ~~~-----~~~-~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~ 121 (160) .+. ... .-..+.+.| ++.+++||++.+.--...-|+.. T Consensus 184 ~g~~~~~~~~~~~~~~l~~~l-~~~~~~pV~v~NDa~a~alaE~~ 227 (429) T 1z05_A 184 QGIVLQMPHYNVKNLALGPEI-YKATGLPVFVANDTRAWALAEKL 227 (429) T ss_dssp TTEEEECSSSBCSSBCHHHHH-HHHHCSCEEEEEHHHHHHHHHHH T ss_pred CCEEECCCCCCCCCCCHHHHH-HHHHCCCEEEECCCCCCCHHHHH T ss_conf 874624898885898458999-99979988994464521448776 No 18 >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide- binding, phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A* 1nga_A* ... Probab=90.35 E-value=0.15 Score=28.68 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=19.1 Q ss_pred CCCEEEEECCCCEEEEEEEECCC Q ss_conf 98399998688768999630765 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGR 38 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~ 38 (160) .++++|||||+.++.+|+.++.. T Consensus 22 ~m~viGIDfGTt~s~va~~~~g~ 44 (404) T 3i33_A 22 SMPAIGIDLGTTYSCVGVFQHGK 44 (404) T ss_dssp -CCCEEEEECSSEEEEEEEETTE T ss_pred CCCEEEEECCCCCEEEEEEECCE T ss_conf 99899999281368999998998 No 19 >2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi} Probab=90.31 E-value=0.96 Score=23.83 Aligned_cols=73 Identities=21% Similarity=0.235 Sum_probs=46.5 Q ss_pred CCHHHHHHHCCCCC----CEEEEECCCCEEEEEEEECCCCEEC----CCEEEECCCCCHHHHHHHHHHHHH------CCC Q ss_conf 58899998358998----3999986887689996307651101----210110477415689899998651------677 Q gi|254780976|r 4 LLIEDLVKSLKPNQ----PIASIDLGTKRIGLAISDPGRRFAH----PRPFLVRKKVTQTALELLSFITTE------NIA 69 (160) Q Consensus 4 ~~~~~~~~~~~~~~----riLgiD~G~kriGiAisd~~~~~a~----Pl~~i~~~~~~~~~~~l~~ii~e~------~i~ 69 (160) +++++..+.++... -+|+.|+|-.++=+|+.|..+.... +..+............+.+++++. .+. T Consensus 12 ~~~~~~~~~~~~~~~~~pl~Lv~DIGGTnir~alv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 91 (373) T 2q2r_A 12 LSLHELCEELKTPAWNAPLTFVGDVGGTSARMGFVREGKNDSVHACVTRYSMKRKDITEIIEFFNEIIELMPASVMKRVK 91 (373) T ss_dssp CCHHHHHHHTTSGGGCSCEEEEEEECSSEEEEEEEEECGGGCEEEEEEEEECTTCBGGGHHHHHHHHHHHSCHHHHTTEE T ss_pred CCHHHHHHHHHCCCCCCCCEEEEEECCHHEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 47888768862656679948999978233322789889974788888521688899999999999999999875488878 Q ss_pred EEEEEEC Q ss_conf 5899721 Q gi|254780976|r 70 AFIIGLP 76 (160) Q Consensus 70 ~iVvGlP 76 (160) .++||.| T Consensus 92 ~i~ia~p 98 (373) T 2q2r_A 92 AGVINVP 98 (373) T ss_dssp EEEEEES T ss_pred EEEEEEE T ss_conf 7999823 No 20 >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Probab=89.21 E-value=0.74 Score=24.51 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=58.2 Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCCEE-CCCEEEECCCCCHHHH----HHHHHHHHH-----CCCEEEEEECCCCCCCC Q ss_conf 8998399998688768999630765110-1210110477415689----899998651-----67758997213578888 Q gi|254780976|r 14 KPNQPIASIDLGTKRIGLAISDPGRRFA-HPRPFLVRKKVTQTAL----ELLSFITTE-----NIAAFIIGLPLNMNGSE 83 (160) Q Consensus 14 ~~~~riLgiD~G~kriGiAisd~~~~~a-~Pl~~i~~~~~~~~~~----~l~~ii~e~-----~i~~iVvGlP~~~~g~~ 83 (160) +..+.++|+|+|..++-+++.|..+.+- .-...++.......+. .+.+++.+. ++.++.|+.|=..|... T Consensus 82 ~~~~~~igv~i~~~~i~~~l~dl~g~ii~~~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~i~gigia~pG~vd~~~ 161 (406) T 1z6r_A 82 TEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTEN 161 (406) T ss_dssp CTTCEEEEEEEETTEEEEEEEETTCCEEEEEEEECCSSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEESSEEETTT T ss_pred CCCCEEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC T ss_conf 88668999998898899999869998898899843679869999999999999999657753564699851257877888 Q ss_pred -----CHHHH--HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH Q ss_conf -----84479--999999999840489977998367167999999 Q gi|254780976|r 84 -----GPRVH--STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 (160) Q Consensus 84 -----~~~~~--~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~ 121 (160) .+... .-..+.+.| ++.+++||++.+.--...-|+.. T Consensus 162 g~v~~~~~~~~~~~~~l~~~l-~~~~~~pv~v~ND~~a~a~aE~~ 205 (406) T 1z6r_A 162 GIVHRMPFYEDVKEMPLGEAL-EQHTGVPVYIQHDISAWTMAEAL 205 (406) T ss_dssp TEEEECTTCTTCSSBCHHHHH-HHHHSSCEEEEEHHHHHHHHHHH T ss_pred CEEECCCCCCCCCCCCHHHHH-HHHHCCCEEECCCHHHHHHHHHH T ss_conf 889727887664688579999-99878884445625689999998 No 21 >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Probab=88.68 E-value=0.4 Score=26.14 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.7 Q ss_pred CCCEEEEECCCCEEEEEEEECCC Q ss_conf 98399998688768999630765 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGR 38 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~ 38 (160) |++++|||+|+.++-+|+.+... T Consensus 1 Ms~viGID~GTt~s~va~~~~g~ 23 (509) T 2v7y_A 1 MSKIIGIDLGTTNSCVAVLEGGE 23 (509) T ss_dssp CCCEEEEEECSSEEEEEEEETTE T ss_pred CCCEEEEECCHHCEEEEEEECCE T ss_conf 99779998670139999999998 No 22 >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 Probab=88.19 E-value=1.4 Score=22.89 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=31.7 Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHC Q ss_conf 839999868876899963076511012101104774156898999986516 Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 (160) Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~ 67 (160) ..+||||.|...+-+++-|+...+-.-.-.-...+.......+.+.+++.. T Consensus 3 m~~lGID~GsT~tk~vv~de~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~ 53 (270) T 1hux_A 3 IYTLGIDVGSTASKCIILKDGKEIVAKSLVAVGTGTSGPARSISEVLENAH 53 (270) T ss_dssp CEEEEEEECSSEEEEEEEETTTEEEEEEEEECCSSCCHHHHHHHHHHHHHT T ss_pred CEEEEEEECHHHEEEEEEECCCEEEEEEEEECCCCHHHHHHHHHHHHHHCC T ss_conf 289999948136999999689949999997358984789999999999705 No 23 >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, SGC, transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Probab=87.87 E-value=1.3 Score=23.04 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=39.9 Q ss_pred EEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 999868876899963076511012101104774156898999986516775899721 Q gi|254780976|r 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 (160) Q Consensus 20 LgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP 76 (160) +|||.|-.+|=+|+.|..+.+- ... .....+++.++++++++..+.++-| T Consensus 23 IGIDiGGT~ik~~~~d~~g~i~---~~~----~~~~~~~i~~~i~~~~i~~Igi~g~ 72 (287) T 2ews_A 23 VGIDAGGTLIKIVQEQDNQRTF---KTE----LTKNIDQVVEWLNQQQIEKLCLTGG 72 (287) T ss_dssp EEEEECSSEEEEEEECSSCEEE---EEE----EGGGHHHHHHHHHTSCCSEEEEEST T ss_pred EEEEECHHHEEEEEEECCCCEE---EEE----EHHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 9999873558999990999899---986----0536999999987606888999800 No 24 >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Probab=87.46 E-value=1.2 Score=23.21 Aligned_cols=105 Identities=10% Similarity=0.093 Sum_probs=58.2 Q ss_pred CCCCEEEEECCCCEEEEEEEECCCCEECCCEEEE---CCCCCHHHHHHHHHHHH---------HCCCEEEEEECCCCCCC Q ss_conf 9983999986887689996307651101210110---47741568989999865---------16775899721357888 Q gi|254780976|r 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITT---------ENIAAFIIGLPLNMNGS 82 (160) Q Consensus 15 ~~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~---~~~~~~~~~~l~~ii~e---------~~i~~iVvGlP~~~~g~ 82 (160) ....++|+|+|..++-+++.|..+.+-.- ..++ ..........+.+++++ .++.++.||.|=..|.. T Consensus 85 ~~~~~igidig~~~i~~~l~d~~g~vi~~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgia~pG~vd~~ 163 (380) T 2hoe_A 85 NCAYVLGIEVTRDEIAACLIDASMNILAH-EAHPLPSQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAAPGPIDTE 163 (380) T ss_dssp GGCEEEEEEECSSEEEEEEEETTCCEEEE-EEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEESSCEETT T ss_pred CCCEEEEEEECCCEEEEEEECCCCCEEEE-EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEECC T ss_conf 80789999999998999999499989999-98757988888999999999999999985421786469999968646078 Q ss_pred CCH-----HHH-HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH Q ss_conf 884-----479-999999999840489977998367167999999 Q gi|254780976|r 83 EGP-----RVH-STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 (160) Q Consensus 83 ~~~-----~~~-~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~ 121 (160) .+. ... .-.++.+.| ++.+++||+..+.--....|+.. T Consensus 164 ~g~v~~~~~~~w~~~~l~~~l-~~~~~~pv~v~NDa~~~alaE~~ 207 (380) T 2hoe_A 164 RGIIIDPRNFPLSQIPLANLL-KEKYGIEVWVENDADMGAVGEKW 207 (380) T ss_dssp TTEECCCSSCTTBTSCHHHHH-HHHHCSEEEEEEHHHHHHHHHHH T ss_pred CCEEECCCCCCCCCCCHHHHH-HHHHCCCEEEEECCCHHHHHHHH T ss_conf 575943578884335479999-99879988998274548999987 No 25 >2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A Probab=86.75 E-value=1.7 Score=22.38 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=63.1 Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHH-----HCCCEEEEEECCCCCCCCCHHH--HH Q ss_conf 8399998688768999630765110121011047741568989999865-----1677589972135788888447--99 Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT-----ENIAAFIIGLPLNMNGSEGPRV--HS 89 (160) Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e-----~~i~~iVvGlP~~~~g~~~~~~--~~ 89 (160) ++||+||--+..+.+|+.+....++. .....+.+.......+.+++++ .+++.|+||. | ++.-+ +. T Consensus 1 M~iLaIdTS~~~~sval~~~~~i~~~-~~~~~r~hs~~L~~~i~~~L~~~~i~~~did~i~v~~-----G-PGSFTGlRi 73 (231) T 2gel_A 1 MRILAIDTATEACSVALWNNGTINAH-FELCPREHTQRILPMVQEILAASGASLNEIDALAFGR-----G-PGSFTGVRI 73 (231) T ss_dssp CEEEEEECSSSEEEEEEEETTEEEEE-EEECCSCCHHHHHHHHHHHHHHTTCCGGGCSEEEEEC-----C-SSCHHHHHH T ss_pred CCEEEEECCCCCEEEEEEECCEEEEE-EEECCHHHHHHHHHHHHHHHHHCHHHHHHHCEEEEEC-----C-CCCHHHHHH T ss_conf 98999993772719999999999999-9975589999999999999875502123310799975-----8-651375889 Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHH Q ss_conf 999999998404899779983671679999 Q gi|254780976|r 90 TRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 (160) Q Consensus 90 v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~ 119 (160) ...+++-|. ...++|+.-++ |.+|. T Consensus 74 g~s~akgla-~~~~ip~igvs----sl~~l 98 (231) T 2gel_A 74 GIGIAQGLA-LGANLPMIGVS----TLATM 98 (231) T ss_dssp HHHHHHHHH-HTTTCCEEEEC----HHHHH T ss_pred HHHHHHHHH-HHHCCCCCCCC----HHHHH T ss_conf 999999999-97488867527----69999 No 26 >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuclease-H fold, sugar kinase, glucose, conformational change; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* Probab=84.63 E-value=2.1 Score=21.75 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=36.6 Q ss_pred CCCEEEEECCCCEEEEEEEECCCCEECCCEEEE----CCCCCHHHHHHHHHHHH---HCCCEEEEEEC Q ss_conf 983999986887689996307651101210110----47741568989999865---16775899721 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV----RKKVTQTALELLSFITT---ENIAAFIIGLP 76 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~----~~~~~~~~~~l~~ii~e---~~i~~iVvGlP 76 (160) |+-++|||.|..++=+|+.|..+.+-.-..+-+ ..........+.+.+++ ..+..+.+|.| T Consensus 1 mm~~iGIDiGgT~~~~~l~d~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~gig~~ 68 (299) T 2e2o_A 1 MMIIVGVDAGGTKTKAVAYDCEGNFIGEGSSGPGNYHNVGLTRAIENIKEAVKIAAKGEADVVGMGVA 68 (299) T ss_dssp CCCEEEEEECSSCEEEEEECTTSCEEEEEEESCCCHHHHCHHHHHHHHHHHHHHHHTSCCSEEEEEET T ss_pred CCEEEEEEECHHHEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC T ss_conf 92999999370037999994999899999927899652209999999999999855898548987047 No 27 >2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10 Probab=84.58 E-value=2.1 Score=21.73 Aligned_cols=94 Identities=10% Similarity=0.122 Sum_probs=52.8 Q ss_pred CEEEEECCCCEEEEEEEECCCCEECCCE--EEECCCCCHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCC-----HHHH Q ss_conf 3999986887689996307651101210--110477415689899998651--677589972135788888-----4479 Q gi|254780976|r 18 PIASIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTE--NIAAFIIGLPLNMNGSEG-----PRVH 88 (160) Q Consensus 18 riLgiD~G~kriGiAisd~~~~~a~Pl~--~i~~~~~~~~~~~l~~ii~e~--~i~~iVvGlP~~~~g~~~-----~~~~ 88 (160) .+||||.|-.+|=+|+.|..+.+-.-.. +-..+........+.+++++. ++..+.|+.|=..+.... +... T Consensus 2 ~~igiD~GGT~~~~~l~d~~G~il~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~igIa~~G~v~~~~~~~~~~~~~~ 81 (289) T 2aa4_A 2 TTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPEALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHNLG 81 (289) T ss_dssp CEEEEEECSSEEEEEEECTTCCEEEEEEEECCSSCCHHHHHHHHHHHHTTTGGGCSEEEEEESSEEETTEEECSSGGGGG T ss_pred CEEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCEEEECCCCCC T ss_conf 69999988003899999799969999999789887899999999999999886558469970662121110474253421 Q ss_pred --HHHHHHHHHHHHCCCCCEEEECCC Q ss_conf --999999999840489977998367 Q gi|254780976|r 89 --STRAFVHNMIDRKVYVPFVFWDER 112 (160) Q Consensus 89 --~v~~f~~~L~~~~~~l~v~~~DEr 112 (160) .-.++...| ++.+++||.+.+.- T Consensus 82 ~~~~~~l~~~l-~~~~~~pv~v~nd~ 106 (289) T 2aa4_A 82 GLLHFPLVKTL-EQLTNLPTIAINDA 106 (289) T ss_dssp GGTTCCHHHHH-HHHHCSCEEEEEHH T ss_pred HHCCCCHHHHH-HHHHCCCEEEECCH T ss_conf 11499469999-99879999993658 No 28 >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Probab=82.74 E-value=0.87 Score=24.07 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=19.8 Q ss_pred CCCEEEEECCCCEEEEEEEECCCC Q ss_conf 983999986887689996307651 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRR 39 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~ 39 (160) |+.|+|||+|+.++-+|+.+.... T Consensus 1 M~~viGIDlGtt~s~va~~~~~~~ 24 (605) T 2kho_A 1 MGKIIGIDLGTTNSCVAIMDGTTP 24 (605) T ss_dssp ---CEEEECCSSEEEEEEEETTEE T ss_pred CCCEEEEECCHHHEEEEEEECCEE T ss_conf 998799984823589999999998 No 29 >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Probab=80.98 E-value=1.1 Score=23.36 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=19.7 Q ss_pred CCCCEEEEECCCCEEEEEEEECCC Q ss_conf 998399998688768999630765 Q gi|254780976|r 15 PNQPIASIDLGTKRIGLAISDPGR 38 (160) Q Consensus 15 ~~~riLgiD~G~kriGiAisd~~~ 38 (160) .+++++|||+|+.++=+|+..+.. T Consensus 2 ~~~~vIGID~GTt~s~va~~~~g~ 25 (554) T 1yuw_A 2 SKGPAVGIDLGTTYSCVGVFQHGK 25 (554) T ss_dssp CSCCCEEEEECSSEEEEEEECSSS T ss_pred CCCCEEEEECCHHCEEEEEEECCE T ss_conf 999999998680208999998998 No 30 >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Probab=77.25 E-value=1.4 Score=22.91 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=16.9 Q ss_pred CCCEEEEECCCCEEEEEEEEC Q ss_conf 983999986887689996307 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDP 36 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~ 36 (160) +++.+|||+|+.++-+|+-+. T Consensus 2 ~~~~iGID~GTtns~va~~~~ 22 (344) T 1jce_A 2 LRKDIGIDLGTANTLVFLRGK 22 (344) T ss_dssp --CEEEEEECSSEEEEEETTT T ss_pred CCCCEEEECCHHHEEEEEECC T ss_conf 878689988845689999597 No 31 >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, acetylation, ATP-binding, calmodulin-binding, chaperone, cytoplasm; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Probab=77.05 E-value=1.9 Score=22.09 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=19.4 Q ss_pred CCCEEEEECCCCEEEEEEEECCC Q ss_conf 98399998688768999630765 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGR 38 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~ 38 (160) |+..+|||+|+.++-+|+.+... T Consensus 1 Ms~~iGIDlGTt~s~va~~~~~~ 23 (675) T 3d2f_A 1 MSTPFGLDLGNNNSVLAVARNRG 23 (675) T ss_dssp -CCCEEEECCSSEEEEEEEETTE T ss_pred CCCEEEEECCCCCEEEEEEECCE T ss_conf 99759998371177999999997 No 32 >1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, structural genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum atcc 12472} SCOP: c.55.1.5 c.55.1.5 Probab=76.31 E-value=4.1 Score=20.02 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=22.9 Q ss_pred HCCCC-CCEEEEECCCCEEEEEEEECCCCE Q ss_conf 35899-839999868876899963076511 Q gi|254780976|r 12 SLKPN-QPIASIDLGTKRIGLAISDPGRRF 40 (160) Q Consensus 12 ~~~~~-~riLgiD~G~kriGiAisd~~~~~ 40 (160) +|+++ +.++|||.|..++=+|+.|..+.+ T Consensus 5 ~~~~~m~y~iGIDiGgT~i~~~l~d~~G~i 34 (305) T 1zc6_A 5 TMNPSIRYLIGVDGGGTGTRIRLHASDGTP 34 (305) T ss_dssp ---CCCCEEEEEEECSSCEEEEEEETTCCE T ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCCCE T ss_conf 189888689999928100899999799989 No 33 >1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7 Probab=75.89 E-value=4.2 Score=19.95 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=39.9 Q ss_pred CCCCCCEEEEECCCCEEEEEEEECCCC---EECCCEEEEC-----------CCCC------HHHHHHHHHHHHHCCCEEE Q ss_conf 589983999986887689996307651---1012101104-----------7741------5689899998651677589 Q gi|254780976|r 13 LKPNQPIASIDLGTKRIGLAISDPGRR---FAHPRPFLVR-----------KKVT------QTALELLSFITTENIAAFI 72 (160) Q Consensus 13 ~~~~~riLgiD~G~kriGiAisd~~~~---~a~Pl~~i~~-----------~~~~------~~~~~l~~ii~e~~i~~iV 72 (160) +.+..|||+||+|.|+...|+-+.... .-....++.- .... ....-+..+...+.++.+| T Consensus 36 ~~~~~rILSIDvGIKNLAyc~l~~~~~~~~~I~~W~~i~L~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~d~vl 115 (258) T 1kcf_A 36 IYPTSRVLGIDLGIKNFSYCFASQNEDSKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVIL 115 (258) T ss_dssp CCCCSSEEEEEECSTTEEEEEEEECTTSCEEEEEEEEECTTSCCTTCCCCCCCCSHHHHHHHHHHHHHHHHHHHCCSEEE T ss_pred CCCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 78998278998274300123561278987557875462125566755313556787999999999999864004799899 Q ss_pred EEECCCCCCC Q ss_conf 9721357888 Q gi|254780976|r 73 IGLPLNMNGS 82 (160) Q Consensus 73 vGlP~~~~g~ 82 (160) |-.-....|. T Consensus 116 IE~Qr~Rs~~ 125 (258) T 1kcf_A 116 MERQRYRSGI 125 (258) T ss_dssp EEECCCCTTT T ss_pred ECCCCCCCCC T ss_conf 7877665677 No 34 >2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} SCOP: c.55.1.9 c.55.1.9 Probab=74.41 E-value=4.6 Score=19.72 Aligned_cols=94 Identities=11% Similarity=0.154 Sum_probs=60.3 Q ss_pred CCCCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHH-----HCCCEEEEEECCCCCCCCCHHHHH Q ss_conf 998399998688768999630765110121011047741568989999865-----167758997213578888844799 Q gi|254780976|r 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT-----ENIAAFIIGLPLNMNGSEGPRVHS 89 (160) Q Consensus 15 ~~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e-----~~i~~iVvGlP~~~~g~~~~~~~~ 89 (160) ..++||+||-- .++.+|+.+....+..- ..-.+.+.+.....+.+++++ .+++.|+|+.= =|+.+ -.+. T Consensus 11 ~~M~iLaiDTS-~~~sval~~~~~i~~~~-~~~~r~hse~L~~~i~~~L~~~~l~~~did~i~v~~G---PGsFT-GlRI 84 (218) T 2a6a_A 11 HHMNVLALDTS-QRIRIGLRKGEDLFEIS-YTGEKKHAEILPVVVKKLLDELDLKVKDLDVVGVGIG---PGGLT-GLRV 84 (218) T ss_dssp --CEEEEEECS-SSEEEEEEETTEEEEEE-EESCGGGGGHHHHHHHHHHHHHTCCGGGCSEEEEECC---SSCHH-HHHH T ss_pred CCCEEEEEECC-CCCEEEEEECCEEEEEE-ECCCHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECC---CCCHH-HHHH T ss_conf 54607779827-76479999899999998-3266689999999999999985999788638999568---98088-8989 Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHH Q ss_conf 999999998404899779983671679999 Q gi|254780976|r 90 TRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 (160) Q Consensus 90 v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~ 119 (160) ...|++-|. ...++|+.-+ ||.++. T Consensus 85 g~a~akgla-~~~~ipl~~v----ssl~~l 109 (218) T 2a6a_A 85 GIATVVGLV-SPYDIPVAPL----NSFEMT 109 (218) T ss_dssp HHHHHHHHH-GGGTCCEEEE----CHHHHH T ss_pred HHHHHHHHH-HHCCCCCCCC----CHHHHH T ss_conf 999999999-8649985545----779999 No 35 >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8} Probab=72.92 E-value=4.9 Score=19.56 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=45.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEC--CC--------CCC-------CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHH Q ss_conf 56898999986516775899721--35--------788-------88844799999999998404899779983671679 Q gi|254780976|r 54 QTALELLSFITTENIAAFIIGLP--LN--------MNG-------SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116 (160) Q Consensus 54 ~~~~~l~~ii~e~~i~~iVvGlP--~~--------~~g-------~~~~~~~~v~~f~~~L~~~~~~l~v~~~DEr~TS~ 116 (160) .+...+.+++++++|+.+|+|=. +. ..| ....+...-+.|++++..+ .++|.-.+..-.+.. T Consensus 48 ~d~~~i~~~~~~~~idlvivGpE~pL~~gl~d~l~~~gi~v~Gp~~~~a~le~sK~~~k~~m~~-~gIpt~~~~~~~~~~ 126 (417) T 2ip4_A 48 GDVEALADWALAEGIDLTLVGPEAPLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMER-YGIPTARYRVFREPL 126 (417) T ss_dssp SCHHHHHHHHHHHTCCEEEECSSHHHHTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHH-TCCCBCCEEEESSHH T ss_pred CCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHH-HCCCCCCCEEEECHH T ss_conf 8999999999985999999897478887889999857997658707788877678999999998-198988854993589 Q ss_pred HHHHHHHHCCC Q ss_conf 99999998698 Q gi|254780976|r 117 SAQQILIDMNV 127 (160) Q Consensus 117 ~A~~~l~~~g~ 127 (160) +|.+.+.+.+. T Consensus 127 ea~~~~~~~~~ 137 (417) T 2ip4_A 127 EALAYLEEVGV 137 (417) T ss_dssp HHHHHHHHHCS T ss_pred HHHHHHHHCCC T ss_conf 99999997699 No 36 >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Probab=71.11 E-value=3.4 Score=20.50 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.7 Q ss_pred EEEEECCCCEEEEEEEECCCC Q ss_conf 999986887689996307651 Q gi|254780976|r 19 IASIDLGTKRIGLAISDPGRR 39 (160) Q Consensus 19 iLgiD~G~kriGiAisd~~~~ 39 (160) ++|||+|+..+.+|+.+.... T Consensus 2 iIgID~Gt~~~kva~~~~~g~ 22 (320) T 2zgy_A 2 LVFIDDGSTNIKLQWQESDGT 22 (320) T ss_dssp EEEEEECSSEEEEEEECSSSC T ss_pred EEEEECCCCCEEEEEECCCCE T ss_conf 999986911699999919933 No 37 >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} Probab=71.02 E-value=5.5 Score=19.24 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=54.5 Q ss_pred EECCCEEEECCCC------CHHHHHH---HHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE- Q ss_conf 1012101104774------1568989---99986516775899721357888884479999999999840489977998- Q gi|254780976|r 40 FAHPRPFLVRKKV------TQTALEL---LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW- 109 (160) Q Consensus 40 ~a~Pl~~i~~~~~------~~~~~~l---~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~- 109 (160) +..|+-+..|-.. ...+... ...+++.++++||+|. ++.||+.... ..+ .|.+...++|++|. T Consensus 88 ~~iPV~vMIRPR~GdF~Ys~~E~~~M~~dI~~~k~~Ga~GvVfG~-L~~dg~ID~~--~~~----~Lv~~a~~l~vTFHR 160 (287) T 3iwp_A 88 VQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGA-LTEDGHIDKE--LCM----SLMAICRPLPVTFHR 160 (287) T ss_dssp CCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECC-BCTTSCBCHH--HHH----HHHHHHTTSCEEECG T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCHH--HHH----HHHHHHCCCCEEEEE T ss_conf 799759996788888888999999999999999986999789955-6899984999--999----999982898569740 Q ss_pred --CCCCCHHHHHHHHHHCCCCH Q ss_conf --36716799999999869864 Q gi|254780976|r 110 --DERLTTVSAQQILIDMNVSR 129 (160) Q Consensus 110 --DEr~TS~~A~~~l~~~g~~~ 129 (160) |+---..+|-+.|.+.|..+ T Consensus 161 AfD~~~d~~~ale~Li~lG~~r 182 (287) T 3iwp_A 161 AFDMVHDPMAALETLLTLGFER 182 (287) T ss_dssp GGGGCSCHHHHHHHHHHHTCSE T ss_pred HHHHCCCHHHHHHHHHHCCCCE T ss_conf 0564089999999999739885 No 38 >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Probab=70.13 E-value=5.8 Score=19.12 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=20.5 Q ss_pred CCC-CEEEEECCCCEEEEEEEECCCCE Q ss_conf 998-39999868876899963076511 Q gi|254780976|r 15 PNQ-PIASIDLGTKRIGLAISDPGRRF 40 (160) Q Consensus 15 ~~~-riLgiD~G~kriGiAisd~~~~~ 40 (160) .|+ -+||||+|+..+=+++-|..+.+ T Consensus 3 ~M~kyvlgIDiGTss~Ka~l~d~~g~i 29 (501) T 3g25_A 3 AMEKYILSIDQGTTSSRAILFNQKGEI 29 (501) T ss_dssp CCCCEEEEEEECSSEEEEEEECTTSCE T ss_pred CCCCEEEEEECCCCCEEEEEECCCCCE T ss_conf 727279999831103100078599989 No 39 >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural genomics, transferase, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum atcc 11170} Probab=67.00 E-value=6.7 Score=18.72 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=22.5 Q ss_pred CCCCCCEEEEECCCCEEEEEEEECCCCE Q ss_conf 5899839999868876899963076511 Q gi|254780976|r 13 LKPNQPIASIDLGTKRIGLAISDPGRRF 40 (160) Q Consensus 13 ~~~~~riLgiD~G~kriGiAisd~~~~~ 40 (160) +...+-|||||+|+..+=+++-|..+.+ T Consensus 3 ~~~~kyvlgIDiGTts~Ka~l~d~~g~i 30 (508) T 3ifr_A 3 LAQGRQVIGLDIGTTSTIAILVRLPDTV 30 (508) T ss_dssp ----CEEEEEEECSSEEEEEEEETTTEE T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCE T ss_conf 7789889999872234277899589999 No 40 >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Probab=66.65 E-value=6.8 Score=18.68 Aligned_cols=74 Identities=14% Similarity=0.222 Sum_probs=48.4 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCC----------CC-------CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCH Q ss_conf 156898999986516775899721357----------88-------8884479999999999840489977998367167 Q gi|254780976|r 53 TQTALELLSFITTENIAAFIIGLPLNM----------NG-------SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT 115 (160) Q Consensus 53 ~~~~~~l~~ii~e~~i~~iVvGlP~~~----------~g-------~~~~~~~~v~~f~~~L~~~~~~l~v~~~DEr~TS 115 (160) ..+...+.+++++++|+.+|+|-.-.+ .| .+..+...-+.|++++.++ .++|...+-.-.+. T Consensus 69 ~~d~~~i~~~~~~~~iD~vvvGpE~pL~~gl~D~l~~~gi~v~Gp~~~aa~lE~sK~faK~~m~~-~~IPta~~~~~~~~ 147 (451) T 2yrx_A 69 ELDIEALVQFAKQQAIDLTIVGPEAPLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKK-YGIPTADHAAFTSY 147 (451) T ss_dssp TTCHHHHHHHHHHTTCSEEEECSHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHH-TTCCBCCEEEESCH T ss_pred CCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHCHHHHHHHHHH-CCCCCCCEEEEECH T ss_conf 68999999999983999999897578888999999506994007789999987577989999997-29798783899789 Q ss_pred HHHHHHHHHCCC Q ss_conf 999999998698 Q gi|254780976|r 116 VSAQQILIDMNV 127 (160) Q Consensus 116 ~~A~~~l~~~g~ 127 (160) .+|.+.+.+.+. T Consensus 148 ~ea~~~~~~~g~ 159 (451) T 2yrx_A 148 EEAKAYIEQKGA 159 (451) T ss_dssp HHHHHHHHHHCS T ss_pred HHHHHHHHHCCC T ss_conf 999999860499 No 41 >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Probab=66.21 E-value=6.9 Score=18.63 Aligned_cols=72 Identities=22% Similarity=0.400 Sum_probs=50.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCC-C-C---------C-------CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCH Q ss_conf 5689899998651677589972135-7-8---------8-------8884479999999999840489977998367167 Q gi|254780976|r 54 QTALELLSFITTENIAAFIIGLPLN-M-N---------G-------SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT 115 (160) Q Consensus 54 ~~~~~l~~ii~e~~i~~iVvGlP~~-~-~---------g-------~~~~~~~~v~~f~~~L~~~~~~l~v~~~DEr~TS 115 (160) .+...+.+++++++|+.+||| |-. + + | ....+...-+.|++++..+ .++|..-+-.-.+. T Consensus 70 ~d~~~l~~~~~~~~iDlvvvG-pE~pL~~Gi~D~l~~~gi~vfGps~~~A~lE~sK~f~k~~m~~-~~IPta~~~~~~~~ 147 (442) T 3lp8_A 70 NSTIEVIQVCKKEKIELVVIG-PETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMR-YGIPTAKYGYFVDT 147 (442) T ss_dssp TCHHHHHHHHHHTTCCEEEEC-SHHHHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHH-HTCCBCCEEEESSH T ss_pred CCHHHHHHHHHHCCCCEEEEC-CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCHHHHHHHHHH-HCCCCCCHHHCCCH T ss_conf 899999999998299999989-8389887889999748994786478898875368999999998-68887510013889 Q ss_pred HHHHHHHHHCCC Q ss_conf 999999998698 Q gi|254780976|r 116 VSAQQILIDMNV 127 (160) Q Consensus 116 ~~A~~~l~~~g~ 127 (160) .+|.+.+.+.+. T Consensus 148 ~ea~~~~~~~~~ 159 (442) T 3lp8_A 148 NSAYKFIDKHKL 159 (442) T ss_dssp HHHHHHHHHSCS T ss_pred HHHHHHHHHCCC T ss_conf 999999860799 No 42 >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural protein; 1.90A {Thermoplasma acidophilum dsm 1728} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Probab=61.81 E-value=5.2 Score=19.39 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=21.1 Q ss_pred HHCCCCC---CEEEEECCCCEEEEEEEECCCCEECCC Q ss_conf 8358998---399998688768999630765110121 Q gi|254780976|r 11 KSLKPNQ---PIASIDLGTKRIGLAISDPGRRFAHPR 44 (160) Q Consensus 11 ~~~~~~~---riLgiD~G~kriGiAisd~~~~~a~Pl 44 (160) +-+.|++ -++|||+|+..+.++..+ ...+-+|- T Consensus 12 ~~~~~~~~~~~iiGID~G~~~vKvv~~~-~~~~~~PS 47 (346) T 2fsj_A 12 SGLVPRGSHMVVVGLDVGYGDTKVIGVD-GKRIIFPS 47 (346) T ss_dssp ---------CEEEEEEECSSEEEEECGG-GCEEEEES T ss_pred CCCCCCCCCCEEEEEECCCCCEEEEECC-CCEEEEEE T ss_conf 5736699988899999585728999989-93899989 No 43 >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* Probab=61.52 E-value=4.9 Score=19.55 Aligned_cols=67 Identities=13% Similarity=0.036 Sum_probs=39.7 Q ss_pred HHHHHCCCCCCEEEEECC---CCEEEEEEEECCCC-------EECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 999835899839999868---87689996307651-------1012101104774156898999986516775899721 Q gi|254780976|r 8 DLVKSLKPNQPIASIDLG---TKRIGLAISDPGRR-------FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 (160) Q Consensus 8 ~~~~~~~~~~riLgiD~G---~kriGiAisd~~~~-------~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP 76 (160) -|...++|..+||++|.- ----|. +.+.... -+.++++ ..++..-+..++.+++++++|..||+|.- T Consensus 126 v~~all~pGD~il~l~l~~GGHlshg~-~~~~~~~~~~~~~~~~~~y~~-d~~~~~IDyd~l~~~a~~~kPklIi~G~S 202 (483) T 1rv3_A 126 VYTALVEPHGRIMGLDLPDGGHLTHGF-MTDKKKISATSIFFESMAYKV-NPDTGYIDYDRLEENARLFHPKLIIAGTS 202 (483) T ss_dssp HHHHHTCTTCEEEEECGGGTCCGGGCC-BCSSCBCSHHHHHSEEEEECB-CTTTCSBCHHHHHHHHHHHCCSEEEECCS T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCC-CCCCCCCCCCCCEEEEEEEEE-CCCCCCCCHHHHHHHHHCCCCCEEEECCC T ss_conf 999971899889742667788654234-456888641121554115604-55557424999999873369987995775 No 44 >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A Probab=59.78 E-value=9.1 Score=17.91 Aligned_cols=83 Identities=11% Similarity=0.184 Sum_probs=53.2 Q ss_pred EECCCEEEECCCCC------HHHHH---HHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE- Q ss_conf 10121011047741------56898---999986516775899721357888884479999999999840489977998- Q gi|254780976|r 40 FAHPRPFLVRKKVT------QTALE---LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW- 109 (160) Q Consensus 40 ~a~Pl~~i~~~~~~------~~~~~---l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~- 109 (160) ...|+-+..|-... ..+.. =...+++.++++||+|. ++.||+...- .++. |.+..-+++++|. T Consensus 50 ~~ipv~vMIRPR~GdF~Ys~~E~~~M~~dI~~~k~~G~dGvVfG~-L~~dg~iD~~--~~~~----Li~~a~~l~vTFHR 122 (256) T 1twd_A 50 VTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGV-LDVDGNVDMP--RMEK----IMAAAGPLAVTFHR 122 (256) T ss_dssp CCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECC-BCTTSSBCHH--HHHH----HHHHHTTSEEEECG T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCHH--HHHH----HHHHHCCCCEEEEC T ss_conf 399749998458998888999999999999999985999678866-8899984999--9999----99985768647744 Q ss_pred --CCCCCHHHHHHHHHHCCCCH Q ss_conf --36716799999999869864 Q gi|254780976|r 110 --DERLTTVSAQQILIDMNVSR 129 (160) Q Consensus 110 --DEr~TS~~A~~~l~~~g~~~ 129 (160) |.----.+|-+.|.+.|..+ T Consensus 123 AfD~~~d~~~al~~Li~lG~~r 144 (256) T 1twd_A 123 AFDMCANPLYTLNNLAELGIAR 144 (256) T ss_dssp GGGGCSCHHHHHHHHHHHTCCE T ss_pred CHHHHCCHHHHHHHHHHCCCCE T ss_conf 2565289999999999759897 No 45 >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, ribonuclease H fold, sugar kinase/HSP70/actin superfamily, domain rotation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Probab=56.89 E-value=10 Score=17.61 Aligned_cols=60 Identities=7% Similarity=0.065 Sum_probs=34.2 Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEEEC----CCCCHHHHHHHHHH----HH------HCCCEEEEEEC Q ss_conf 839999868876899963076511012101104----77415689899998----65------16775899721 Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFI----TT------ENIAAFIIGLP 76 (160) Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~----~~~~~~~~~l~~ii----~e------~~i~~iVvGlP 76 (160) +-++|||.|-.++=+|+.|..+.+-.-...-.. ...+.....|.+.+ ++ ..+..++++.| T Consensus 6 ~~~iGIDiGGTk~~~~l~d~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~g~~~~~~i~~ig~~~~ 79 (347) T 2ch5_A 6 AIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLS 79 (347) T ss_dssp CEEEEEEECTTCEEEEEEETTSCEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEET T ss_pred CEEEEEECCCHHEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC T ss_conf 78999990612128889949999999999468996658999999999999999999749997764444334236 No 46 >3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Probab=56.88 E-value=10 Score=17.61 Aligned_cols=134 Identities=12% Similarity=0.096 Sum_probs=73.6 Q ss_pred HHCCCCC--CEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCC-------H----HHHHHHHHHHHHCCCEEEEEECC Q ss_conf 8358998--399998688768999630765110121011047741-------5----68989999865167758997213 Q gi|254780976|r 11 KSLKPNQ--PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-------Q----TALELLSFITTENIAAFIIGLPL 77 (160) Q Consensus 11 ~~~~~~~--riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~-------~----~~~~l~~ii~e~~i~~iVvGlP~ 77 (160) ....+.. -++.+|.|...+++-.+.....++.--..++.+... . ....+.+.+..+.+..+||+=|= T Consensus 123 ~~~~~~~~~~~~vv~~~ea~i~~l~~~~~~~~~~i~~~~p~K~~~~~~~~~~~f~~~v~~~i~~~~~~~~~~~iIiaGPG 202 (358) T 3agj_B 123 AAGRARGTAVIAAVDYDEFALAVLAGHGMKILEDTSARLPGKDDPSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPG 202 (358) T ss_dssp HHCCCCCEEEEEEECSSEEEEEEEESSCEEEEEEEECCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEESS T ss_pred HHCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCH T ss_conf 62324565189999737838999973718999999840797777651689999999999999998776258759998787 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 578888844799999999998404899779983671679999999986986445464378998999999999686456 Q gi|254780976|r 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155 (160) Q Consensus 78 ~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~~~~ 155 (160) . .-..|.+.+.....+..+..++..++...+-......+. ..+.-...-.....-+++.|+.+++.- T Consensus 203 -------f---~k~~f~~~l~~~~~~~~~~~v~~s~g~~~gl~Evl~~~~-v~~~l~~~~~~~e~~~le~f~~~l~~~ 269 (358) T 3agj_B 203 -------Q---LKTSVAEKVQRAMPSLKVATVDTSMGGVAGVREALRRES-VTRILRELSIVEAEGVLEEFLRRIAKS 269 (358) T ss_dssp -------S---HHHHHHHHHHHHSTTSEEEEEECSCCHHHHHHHHTTSHH-HHHHTTTCHHHHHHHHHHHHHHHHHHC T ss_pred -------H---HHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf -------8---999999999877410607999638873345778861756-899887768999999999999986067 No 47 >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent enzyme, lyase, cytoplasm, acid resistance; HET: LLP; 2.4A {Escherichia coli} Probab=56.32 E-value=10 Score=17.56 Aligned_cols=53 Identities=13% Similarity=0.286 Sum_probs=39.2 Q ss_pred HHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHH Q ss_conf 998651677589972135788888447999999999984048997799836716799 Q gi|254780976|r 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117 (160) Q Consensus 61 ~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~DEr~TS~~ 117 (160) .+....++..+||-+- .........+..|...+..++..+||++.-|+.++.+ T Consensus 47 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 99 (755) T 2vyc_A 47 ILSSNEAIDCLMFSYQ----MEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALA 99 (755) T ss_dssp HHTTTCCCSEEEEECC----CCSHHHHHHHHHHHHHHHHHSTTCCEEEEECHHHHHH T ss_pred HHHHCCCCCEEEEECC----CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHH T ss_conf 9975888768999706----8885321349999999997388999899954653031 No 48 >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Probab=56.23 E-value=9.1 Score=17.91 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=20.8 Q ss_pred CCCEEEEECCCCEEEEEEEECCCCE Q ss_conf 9839999868876899963076511 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRF 40 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~ 40 (160) |.-|||||+|+..+=+++-|..+.+ T Consensus 3 M~~vlgID~GTss~Ka~l~d~~g~~ 27 (503) T 2w40_A 3 MNVILSIDQSTQSTKVFFYDEELNI 27 (503) T ss_dssp CEEEEEEEECSSEEEEEEEETTCCE T ss_pred CCEEEEEECCCCCEEEEEECCCCCE T ss_conf 6699999851002100078699989 No 49 >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Probab=55.49 E-value=10 Score=17.66 Aligned_cols=32 Identities=16% Similarity=0.007 Sum_probs=23.1 Q ss_pred CCCEEEEECCCCEEEEEEEECCCCE----ECCCEEE Q ss_conf 9839999868876899963076511----0121011 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRF----AHPRPFL 47 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~----a~Pl~~i 47 (160) |+-+||||+|+..+=+++-|..+.+ ..|.++. T Consensus 1 M~y~lgIDiGTts~Ka~l~d~~g~~~~~~~~~~~~~ 36 (495) T 2dpn_A 1 MAFLLALDQGTTSSRAILFTLEGRPVAVAKREFRQL 36 (495) T ss_dssp --CEEEEEECSSEEEEEEECTTSCEEEEEEEECCEE T ss_pred CCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCEE T ss_conf 969999974232334448808899999999745604 No 50 >3h1q_A Ethanolamine utilization protein EUTJ; structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-2901} Probab=55.38 E-value=11 Score=17.46 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=40.3 Q ss_pred CCEEEEECCCCEEEEEEEECCCCEEC-CCEEE-E-CCC----CC---HHHHHHHHHHHH---HCCCEEEEEECCCCCCCC Q ss_conf 83999986887689996307651101-21011-0-477----41---568989999865---167758997213578888 Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAH-PRPFL-V-RKK----VT---QTALELLSFITT---ENIAAFIIGLPLNMNGSE 83 (160) Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~-Pl~~i-~-~~~----~~---~~~~~l~~ii~e---~~i~~iVvGlP~~~~g~~ 83 (160) ...+|||.|+.++=+++.|......- ...+. + ++. .. ..++++.+.++. ..+...|++.|-.....+ T Consensus 28 p~~vgIDlGTt~~~v~v~~~~~~~~~~~~~~~~~l~~GvI~d~~~a~~~l~~l~~~ae~~~g~~i~~~vi~VP~~~t~~~ 107 (272) T 3h1q_A 28 PYKVGVDLGTADIVLVVTDQEGIPVAGALKWASVVKDGLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRN 107 (272) T ss_dssp CCEEEEECCSSEEEEEEECTTCCEEEEEEEECCCCBTTBCTTHHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---C T ss_pred CCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH T ss_conf 86799988998589999999998897754444478788796589999999999999998749988868999899899899 Q ss_pred CH Q ss_conf 84 Q gi|254780976|r 84 GP 85 (160) Q Consensus 84 ~~ 85 (160) -. T Consensus 108 r~ 109 (272) T 3h1q_A 108 AE 109 (272) T ss_dssp TT T ss_pred HH T ss_conf 99 No 51 >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} Probab=54.94 E-value=11 Score=17.42 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=41.4 Q ss_pred HHHHHCCCCCCEEEEECCC---CEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 9998358998399998688---768999630765110121011047741568989999865167758997213 Q gi|254780976|r 8 DLVKSLKPNQPIASIDLGT---KRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 (160) Q Consensus 8 ~~~~~~~~~~riLgiD~G~---kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~ 77 (160) =|+..+++..+||++|... --.|--++-.....-...-.+ ..+..-++.++.+++++++|..|++|.-. T Consensus 103 v~~all~pGd~im~l~l~~GGHlshg~~~~~~~~~~~~~~y~~-~~~~~IDyd~~~~~a~~~kPklIi~G~S~ 174 (417) T 3n0l_A 103 VYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGV-ELDGRIDYEKVREIAKKEKPKLIVCGASA 174 (417) T ss_dssp HHHHHSCTTCEEEEECC----------------CCSEEEEECC-CTTSSCCHHHHHHHHHHHCCSEEEECCSS T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCC-CCCCCCCHHHHHHHHHHCCCCEEEECCCC T ss_conf 9999628998799735676777676646466550343465688-98885679999999986199857752544 No 52 >2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} Probab=52.29 E-value=12 Score=17.16 Aligned_cols=74 Identities=16% Similarity=0.321 Sum_probs=53.4 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCC----------CC-------CCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHH Q ss_conf 5689899998651677589972135----------78-------888844799999999998404899779983671679 Q gi|254780976|r 54 QTALELLSFITTENIAAFIIGLPLN----------MN-------GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116 (160) Q Consensus 54 ~~~~~l~~ii~e~~i~~iVvGlP~~----------~~-------g~~~~~~~~v~~f~~~L~~~~~~l~v~~~DEr~TS~ 116 (160) .+...+.+++++++|+.+|||-.-. .. ..+..+....+.|++++..+ .++|.-.+..-.+-. T Consensus 75 ~d~~~i~~~~~~~~iDlvivGpE~pL~~Gl~D~l~~~gi~vfGps~~aa~lE~sK~f~k~~m~~-~~Ipta~~~~~~~~~ 153 (452) T 2qk4_A 75 SDHTALAQFCKEKKIEFVVVGPEAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDR-HGIPTAQWKAFTKPE 153 (452) T ss_dssp SCHHHHHHHHHHHTCCEEEECSSHHHHTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHH-TTCCBCCEEEESSHH T ss_pred CCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEECCHHHHHHHHHCHHHHHHHHHH-CCCCCCHHEEEECHH T ss_conf 7999999999985999999897389898899999867994435508888877479999999985-179997023994689 Q ss_pred HHHHHHHHCCCC Q ss_conf 999999986986 Q gi|254780976|r 117 SAQQILIDMNVS 128 (160) Q Consensus 117 ~A~~~l~~~g~~ 128 (160) +|.+.+.+.+.. T Consensus 154 ea~~~i~~~~~P 165 (452) T 2qk4_A 154 EACSFILSADFP 165 (452) T ss_dssp HHHHHHHHCSSC T ss_pred HHHHHHHHCCCC T ss_conf 999999866998 No 53 >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Probab=48.66 E-value=14 Score=16.81 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=22.3 Q ss_pred CCCEEEEECCCCEEEEEEEECCCCEE----CCCEEE Q ss_conf 98399998688768999630765110----121011 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRFA----HPRPFL 47 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~a----~Pl~~i 47 (160) ++-+||||+|+..+=+++-|..+.+- .|++++ T Consensus 4 ~~Y~lgIDiGTts~Ka~l~d~~G~i~~~~~~~~~~~ 39 (554) T 3l0q_A 4 ASYFIGVDVGTGSARAGVFDLQGRMVGQASREITMF 39 (554) T ss_dssp CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCE T ss_pred CCEEEEEEECCCCEEEEEECCCCCEEEEEEEECCCC T ss_conf 877999981454525458849998999999856617 No 54 >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} SCOP: c.67.1.4 PDB: 3ou5_A Probab=47.39 E-value=11 Score=17.49 Aligned_cols=65 Identities=20% Similarity=0.063 Sum_probs=39.6 Q ss_pred HHHHHCCCCCCEEEEECC--C----------CEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 999835899839999868--8----------7689996307651101210110477415689899998651677589972 Q gi|254780976|r 8 DLVKSLKPNQPIASIDLG--T----------KRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75 (160) Q Consensus 8 ~~~~~~~~~~riLgiD~G--~----------kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGl 75 (160) =|...++|..+||++|.- - .++++.- ..--..|+.+ ..++..-+.+++.++++++.|..||+|. T Consensus 136 v~~all~pGD~im~~~l~~GGHlshg~~~~~~~~~~~~---~~~~~~~Y~~-d~~~~~IDyd~l~~~a~~~kPklIi~G~ 211 (490) T 2a7v_A 136 VYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS---IFFESMPYKL-NPKTGLIDYNQLALTARLFRPRLIIAGT 211 (490) T ss_dssp HHHHHCCSCEECCC----------------------------------CCB-CTTTCSBCHHHHHHHHHHHCCSEEEECC T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEE---EEEEEEEEEE-CCCCCCCCHHHHHHHHHHCCCCEEEECC T ss_conf 99997288887995377778764455347776530366---7656761155-5898810699999998605998899777 Q ss_pred C Q ss_conf 1 Q gi|254780976|r 76 P 76 (160) Q Consensus 76 P 76 (160) - T Consensus 212 S 212 (490) T 2a7v_A 212 S 212 (490) T ss_dssp S T ss_pred C T ss_conf 4 No 55 >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, cytoplasm, one-carbon metabolism, pyridoxal phosphate; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A* Probab=46.96 E-value=15 Score=16.65 Aligned_cols=67 Identities=12% Similarity=0.074 Sum_probs=42.3 Q ss_pred HHHHHCCCCCCEEEEECCC---CEEEEEEEEC-CCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 9998358998399998688---7689996307-6511012101104774156898999986516775899721 Q gi|254780976|r 8 DLVKSLKPNQPIASIDLGT---KRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 (160) Q Consensus 8 ~~~~~~~~~~riLgiD~G~---kriGiAisd~-~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP 76 (160) =|...++|..+||++|.-. ---|-.++-. ..-...|+++= ++..-+++++.++++++.|..||+|.. T Consensus 108 v~~all~pGD~il~l~l~~GGHlshg~~~~~~g~~~~~~~y~vd--~~~~IDyd~~~~~a~~~kPklIi~G~S 178 (420) T 3gbx_A 108 VYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEHKPKMIIGGFS 178 (420) T ss_dssp HHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHHCCSEEEECCT T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCC--CCCCCCHHHHHHHHHHCCCCEEEECCC T ss_conf 99982799998997455567764556654456535788742538--888718999999998609987993553 No 56 >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Probab=46.33 E-value=13 Score=16.89 Aligned_cols=101 Identities=15% Similarity=0.227 Sum_probs=62.2 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCC----------CC-------CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHH Q ss_conf 56898999986516775899721357----------88-------88844799999999998404899779983671679 Q gi|254780976|r 54 QTALELLSFITTENIAAFIIGLPLNM----------NG-------SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116 (160) Q Consensus 54 ~~~~~l~~ii~e~~i~~iVvGlP~~~----------~g-------~~~~~~~~v~~f~~~L~~~~~~l~v~~~DEr~TS~ 116 (160) .+...+.+++++++|+.+|||=.-.+ .| ....+.+.-+.|++++..+ .++|...+..-.+-. T Consensus 54 ~d~~~i~~~~~~~~idlvivgpe~pL~~Gl~D~l~~~gi~vfGP~~~aA~lE~sK~fak~~m~~-~~IPta~~~~~~~~~ 132 (431) T 3mjf_A 54 TDIAGLLAFAQSHDIGLTIVGPEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLAR-HNIPSAEYQNFTDVE 132 (431) T ss_dssp TCHHHHHHHHHHTTEEEEEECSHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHH-TTCSBCCEEEESCHH T ss_pred CCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHH-CCCCCCCEEEECCHH T ss_conf 6999999999982999899897489887799999747993338778887877619999999875-265887469958999 Q ss_pred HHHHHHHHCCCCHHHH-------HHH---HHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999869864454-------643---78998999999999686456 Q gi|254780976|r 117 SAQQILIDMNVSRKKR-------IQK---VDSIAAALILQEVLDRISFL 155 (160) Q Consensus 117 ~A~~~l~~~g~~~k~~-------k~~---iD~~AA~iILq~~Ld~~~~~ 155 (160) +|.+.+.+.+..-=-+ |+. .|...|.-.++..+....+. T Consensus 133 ~a~~~~~~~~~p~VIK~dgla~GKGV~v~~~~~ea~~a~~~~~~~~~~g 181 (431) T 3mjf_A 133 AALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFG 181 (431) T ss_dssp HHHHHHHHHCSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHH T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHCCCC T ss_conf 9998752569877997166678776267521168899899987511345 No 57 >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Probab=45.37 E-value=16 Score=16.50 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=42.7 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEC--CC--------CCC-------CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCH Q ss_conf 156898999986516775899721--35--------788-------8884479999999999840489977998367167 Q gi|254780976|r 53 TQTALELLSFITTENIAAFIIGLP--LN--------MNG-------SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT 115 (160) Q Consensus 53 ~~~~~~l~~ii~e~~i~~iVvGlP--~~--------~~g-------~~~~~~~~v~~f~~~L~~~~~~l~v~~~DEr~TS 115 (160) ..+.+.+.+++++++|+.+|+|-- +. ..| .++.+...-+.|++++..+ .++|.-.+-.-.+- T Consensus 48 ~~d~~~i~~~~~~~~id~vi~g~e~~l~~~~a~~l~~~gi~~~gp~~~~~~~~~~K~~~k~~~~~-~gipt~~~~~~~~~ 126 (424) T 2yw2_A 48 PTDVEKLAEFAKNEGVDFTIVGPEAPLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKK-YGIPTARYEVFTDF 126 (424) T ss_dssp TTCHHHHHHHHHHHTCSEEEECSHHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHH-TTCCBCCEEEESCH T ss_pred CCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHH-CCCCCCCCCCCCCH T ss_conf 89999999999996999999898478888899999867983138489999998688999999998-49896344455619 Q ss_pred HHHHHHHHHCCC Q ss_conf 999999998698 Q gi|254780976|r 116 VSAQQILIDMNV 127 (160) Q Consensus 116 ~~A~~~l~~~g~ 127 (160) .+|.+.+.+.|. T Consensus 127 ~ea~~~~~~~g~ 138 (424) T 2yw2_A 127 EKAKEYVEKVGA 138 (424) T ss_dssp HHHHHHHHHHCS T ss_pred HHHHHHHHHCCC T ss_conf 999999986499 No 58 >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinase-HSP70- actin superfamily, L-rhamnulose kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Probab=44.39 E-value=14 Score=16.72 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=19.9 Q ss_pred CCCCEEEEECCCCEEEEEEEECCCC Q ss_conf 9983999986887689996307651 Q gi|254780976|r 15 PNQPIASIDLGTKRIGLAISDPGRR 39 (160) Q Consensus 15 ~~~riLgiD~G~kriGiAisd~~~~ 39 (160) .++-+||||+|+..+=+++-|..+. T Consensus 2 ~~~~~lgiDiGTtsvKa~l~d~~g~ 26 (489) T 2uyt_A 2 TFRNCVAVDLGASSGRVMLARYERE 26 (489) T ss_dssp CCEEEEEEEECSSEEEEEEEEEEGG T ss_pred CCCEEEEEECCCCCEEEEEEECCCC T ss_conf 9876999977643526589967998 No 59 >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A Probab=41.31 E-value=18 Score=16.12 Aligned_cols=87 Identities=11% Similarity=0.162 Sum_probs=46.3 Q ss_pred CCCCCCEEEEECCCCEEEEEEEECCCCEECC-CEEEECCCCCHHHHHHHHHHHH--HCCCEEEEEECCCCCCCCCHHHHH Q ss_conf 5899839999868876899963076511012-1011047741568989999865--167758997213578888844799 Q gi|254780976|r 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITT--ENIAAFIIGLPLNMNGSEGPRVHS 89 (160) Q Consensus 13 ~~~~~riLgiD~G~kriGiAisd~~~~~a~P-l~~i~~~~~~~~~~~l~~ii~e--~~i~~iVvGlP~~~~g~~~~~~~~ 89 (160) |.+| +|.||.|-.|+=.|+.+....+... +.+-.....++....+..+... .++..+++.--. .+.... T Consensus 1 m~~M--~L~iDiGNT~ik~~l~~~~~~~~~~~~~t~~~~~~de~~~~l~~~~~~~~~~i~~v~isSVv------p~~~~~ 72 (249) T 3bex_A 1 MDPM--YLLVDVGNTHSVFSITEDGKTFRRWRLSTGVFQTEDELFSHLHPLLGDAMREIKGIGVASVV------PTQNTV 72 (249) T ss_dssp CCCE--EEEEEECSSEEEEEEESSSSSCEEEEEECCTTCCHHHHHHHHHHHHGGGGGGEEEEEEEESC------HHHHHH T ss_pred CCCC--EEEEEECCCCEEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEC------CCHHHH T ss_conf 9961--99999976602899998999999999607876787999999999853445432202443542------606899 Q ss_pred HHHHHHHHHHHCCCCCEEEECC Q ss_conf 9999999984048997799836 Q gi|254780976|r 90 TRAFVHNMIDRKVYVPFVFWDE 111 (160) Q Consensus 90 v~~f~~~L~~~~~~l~v~~~DE 111 (160) ...+.+ +.+++++.+... T Consensus 73 l~~~~~----~~~~~~~~~~~~ 90 (249) T 3bex_A 73 IERFSQ----KYFHISPIWVKA 90 (249) T ss_dssp HHHHHH----HHHSCCCEECCC T ss_pred HHHHHH----HCCCCCEEEECC T ss_conf 999998----535863388436 No 60 >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Probab=40.87 E-value=14 Score=16.74 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=17.1 Q ss_pred CCCCEEEEECCCCEEEEEEEECC Q ss_conf 99839999868876899963076 Q gi|254780976|r 15 PNQPIASIDLGTKRIGLAISDPG 37 (160) Q Consensus 15 ~~~riLgiD~G~kriGiAisd~~ 37 (160) .+.-++|||+|...+-+++.+.. T Consensus 2 ~~~~iigiDiG~~~~K~~~~~~~ 24 (355) T 3js6_A 2 SNVYVMALDFGNGFVKGKINDEK 24 (355) T ss_dssp CCEEEEEEEECSSEEEEEETTEE T ss_pred CCCEEEEEECCCEEEEEEECCCC T ss_conf 99839999937001999999833 No 61 >3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Probab=40.38 E-value=19 Score=16.03 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=24.5 Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCCEE----CCCEEEE Q ss_conf 8998399998688768999630765110----1210110 Q gi|254780976|r 14 KPNQPIASIDLGTKRIGLAISDPGRRFA----HPRPFLV 48 (160) Q Consensus 14 ~~~~riLgiD~G~kriGiAisd~~~~~a----~Pl~~i~ 48 (160) ....-|||||.|+..+=+++-|..+.+. .|.+++. T Consensus 2 ~~~~YilgID~GTts~Ka~l~d~~g~~v~~~~~~~~~~~ 40 (511) T 3hz6_A 2 SLAFYIATFDIGTTEVKAALADRDGGLHFQRSIALETYG 40 (511) T ss_dssp CCCCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBS T ss_pred CCCEEEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCC T ss_conf 745379999851202130378188999999998347346 No 62 >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... Probab=40.36 E-value=19 Score=16.03 Aligned_cols=67 Identities=4% Similarity=-0.080 Sum_probs=39.2 Q ss_pred HHHHCCCCCCEEEEECCCC---EEEEEEEECCCCE--ECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 9983589983999986887---6899963076511--0121011047741568989999865167758997213 Q gi|254780976|r 9 LVKSLKPNQPIASIDLGTK---RIGLAISDPGRRF--AHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 (160) Q Consensus 9 ~~~~~~~~~riLgiD~G~k---riGiAisd~~~~~--a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~ 77 (160) |...++|..+||++|.-.- -.|- .....+.. ..+++ +..++..-+++++.++++++.|..|++|.-. T Consensus 102 ~~all~pGD~il~l~l~~GGHlshg~-~~~~~g~~~~~~~y~-~d~~~~~iD~d~~~~~a~~~kPklIi~G~S~ 173 (405) T 2vi8_A 102 YFTVLEHGDTVLGMNLSHGGHLTHGS-PVNFSGVQYNFVAYG-VDPETHVIDYDDVREKARLHRPKLIVAAAAA 173 (405) T ss_dssp HHHHCCTTCEEEEECGGGTCCTTTTC-TTSHHHHHSEEEEEC-BCTTTCSBCHHHHHHHHHHHCCSEEEECCSS T ss_pred HHHHCCCCCEEEEECCCCCCCCCCCC-CCCCCCEEEEEEECC-CCCCCCEECHHHHHHHHHHCCCCEEEECCCC T ss_conf 99860799989973477687435555-445554578877634-6544584519999999973498468631456 No 63 >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleotide-binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Probab=40.19 E-value=19 Score=16.01 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=20.4 Q ss_pred CCCEEEEECCCCEEEEEEEECCCCE Q ss_conf 9839999868876899963076511 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRF 40 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~ 40 (160) +.-+||||+|+..+=.++-|..+.+ T Consensus 4 ~~y~lgIDiGTts~Ka~l~d~~g~~ 28 (506) T 3h3n_X 4 KNYVMAIDQGTTSSRAIIFDRNGKK 28 (506) T ss_dssp CCEEEEEEECSSEEEEEEEETTSCE T ss_pred CCEEEEEECCCCCEEEEEECCCCCE T ss_conf 8589999832203100068189999 No 64 >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, cytoplasm, one-carbon metabolism, pyridoxal phosphate; 1.60A {Burkholderia pseudomallei} Probab=38.40 E-value=20 Score=15.84 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=40.3 Q ss_pred HHHHHCCCCCCEEEEECCC---CEEE--EEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 9998358998399998688---7689--9963076511012101104774156898999986516775899721 Q gi|254780976|r 8 DLVKSLKPNQPIASIDLGT---KRIG--LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 (160) Q Consensus 8 ~~~~~~~~~~riLgiD~G~---kriG--iAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP 76 (160) =|...++|..+||++|.-. ---| +.++- ..--+.++++- ..+..-+.+++.+++++++|..||+|.- T Consensus 110 v~~all~pGD~il~l~l~~GGHlshg~~~~~~g-~~~~~~~y~~~-~~~~~IDyd~~~~~a~~~kPklIi~G~S 181 (425) T 3ecd_A 110 VMLALAKPGDTVLGMSLDAGGHLTHGAKPALSG-KWFNALQYGVS-RDTMLIDYDQVEALAQQHKPSLIIAGFS 181 (425) T ss_dssp HHHHHCCTTCEEEEECC-------------------CEEEEECCC-TTTSSCCHHHHHHHHHHHCCSEEEEECS T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCE-EEEEEEECCCC-CCCCCCCHHHHHHHHHHCCCCEEEECCC T ss_conf 999845899989985634588755455556530-37886874523-3567626999999986529987996665 No 65 >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, glycerol metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis KOD1} Probab=37.48 E-value=21 Score=15.75 Aligned_cols=22 Identities=27% Similarity=0.222 Sum_probs=18.1 Q ss_pred CEEEEECCCCEEEEEEEECCCC Q ss_conf 3999986887689996307651 Q gi|254780976|r 18 PIASIDLGTKRIGLAISDPGRR 39 (160) Q Consensus 18 riLgiD~G~kriGiAisd~~~~ 39 (160) -+||||+|+..+=.++-|..+. T Consensus 4 y~lgIDiGTss~Ka~l~d~~g~ 25 (497) T 2zf5_O 4 FVLSLDEGTTSARAIIFDRESN 25 (497) T ss_dssp EEEEEEECSSEEEEEEECTTCC T ss_pred EEEEEECCCCCEEEEEEECCCC T ss_conf 8999980253527669958899 No 66 >1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1 Probab=36.26 E-value=22 Score=15.63 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=5.4 Q ss_pred CEEEEEECCCCCC Q ss_conf 7589972135788 Q gi|254780976|r 69 AAFIIGLPLNMNG 81 (160) Q Consensus 69 ~~iVvGlP~~~~g 81 (160) +.+|+|-|-.-+| T Consensus 48 d~li~~~sT~G~G 60 (179) T 1yob_A 48 QFLILGTPTLGEG 60 (179) T ss_dssp SEEEEEEECBTTT T ss_pred CEEEEEECCCCCC T ss_conf 8799994676898 No 67 >3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Probab=33.45 E-value=24 Score=15.36 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=74.7 Q ss_pred HHHHHHHCCCC----CCEEEEECCCCEEEEEEEECCCCEECCCEEEE---CCCCCHHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 89999835899----83999986887689996307651101210110---477415689899998651677589972135 Q gi|254780976|r 6 IEDLVKSLKPN----QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFIIGLPLN 78 (160) Q Consensus 6 ~~~~~~~~~~~----~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~---~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~ 78 (160) ++-+.....+. --++.+|-|...+++.-+.....++.-..... .+....++.++.+.+..+++..+||+=| T Consensus 116 le~L~ea~~~~~ka~v~~vv~d~g~A~i~~l~~~~i~~i~~~~~~~~~~~~~~~~~ff~~i~~~l~~~~~k~iIiaGP-- 193 (352) T 3oby_A 116 LERLRRAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEIFEERMGYGKGMGDSRKEFFGEVAAKLESFDFKYLIVAGP-- 193 (352) T ss_dssp HHHHHHHHTTSCCCCEEEEEEETTEEEEEEEETTEEEEEEEEEC--------CCCCHHHHHHHHHHHHCCSEEEEECS-- T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC-- T ss_conf 999998645024873899998389499999815479992000268887630579999999999986057647999787-- Q ss_pred CCCCCCHHHHHHHHHHHHHHHH--CCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7888884479999999999840--489977998367167999999998698644546437899899999999968645 Q gi|254780976|r 79 MNGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154 (160) Q Consensus 79 ~~g~~~~~~~~v~~f~~~L~~~--~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~~~ 154 (160) +..-. .|.+.+... ...-.+..+|=.++...+-+.+...+.-.+ .-.........-+++.|++.++. T Consensus 194 -----Gf~k~---~f~~~l~~~~~~~~~~~~i~~~s~~g~~gl~Evl~~~~~~~-~l~~~k~~~e~~~le~f~~~l~~ 262 (352) T 3oby_A 194 -----GFAKN---DFLDFLKERYPEMAKNAVVVDVSSVGSRGFIEILKRRVVDK-IVGEVRLAEEAEYIDRLLEGIAK 262 (352) T ss_dssp -----TTHHH---HHHHHHHHHCHHHHTTEEECCCCCCHHHHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHHHHHHHH T ss_pred -----HHHHH---HHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHHCC T ss_conf -----68899---99999988768864585999806772688999972745899-99988999999999999998515 No 68 >2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4 c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* Probab=33.23 E-value=24 Score=15.34 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=20.2 Q ss_pred CCCEEEEECCCCEEEEEEEECCCCE Q ss_conf 9839999868876899963076511 Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRF 40 (160) Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~ 40 (160) ++-+||||+|+..+=+++-|..+.+ T Consensus 2 kkY~lgIDiGTss~Ka~l~d~~g~~ 26 (510) T 2p3r_A 2 KKYIVALDQGTTSSRAVVMDHDANI 26 (510) T ss_dssp CCEEEEEEECSSEEEEEEECTTCCE T ss_pred CEEEEEEEECCCCEEEEEECCCCCE T ss_conf 7499999822414222288299989 No 69 >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics, NPPSFA; HET: PLP; 1.15A {Thermus thermophilus HB8} Probab=32.80 E-value=10 Score=17.62 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=39.0 Q ss_pred HHHHHCCCCCCEEEEECCC--C-EEEEEEEECCC-CEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 9998358998399998688--7-68999630765-11012101104774156898999986516775899721 Q gi|254780976|r 8 DLVKSLKPNQPIASIDLGT--K-RIGLAISDPGR-RFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 (160) Q Consensus 8 ~~~~~~~~~~riLgiD~G~--k-riGiAisd~~~-~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP 76 (160) =|...++|..+||++|... - --|-.++-... --..++++ ..++..-+++++.+++++++|..|++|.- T Consensus 101 v~~All~pGd~il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~-~~~~~~ID~d~~~~~a~~~kPklIi~G~S 172 (407) T 2dkj_A 101 VYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGV-RPDTELIDLEEVRRLALEHRPKVIVAGAS 172 (407) T ss_dssp HHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECC-CTTTSSCCHHHHHHHHHHHCCSEEEECCS T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC-CCCCCCCCHHHHHHHHHHCCCCEEEECCC T ss_conf 9999648998788605001235444665565551553212563-57777438999999998759988996774 No 70 >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Probab=32.52 E-value=25 Score=15.26 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=18.6 Q ss_pred CEEEEECCCCEEEEEEEECCCCE Q ss_conf 39999868876899963076511 Q gi|254780976|r 18 PIASIDLGTKRIGLAISDPGRRF 40 (160) Q Consensus 18 riLgiD~G~kriGiAisd~~~~~ 40 (160) -+||||+|+..+=+++-|..+.+ T Consensus 3 y~lgID~GTts~Ka~l~d~~g~i 25 (504) T 2d4w_A 3 YVLAIDQGTTSSRAIVFDHSGEI 25 (504) T ss_dssp EEEEEEECSSEEEEEEECTTSCE T ss_pred EEEEEEECCCCEEEEEECCCCCE T ss_conf 99999832313100178598989 No 71 >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} Probab=29.48 E-value=28 Score=14.95 Aligned_cols=67 Identities=10% Similarity=0.022 Sum_probs=39.0 Q ss_pred HHHHHCCCCCCEEEEECCC--C-EEEEEEEECCC--CEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 9998358998399998688--7-68999630765--11012101104774156898999986516775899721 Q gi|254780976|r 8 DLVKSLKPNQPIASIDLGT--K-RIGLAISDPGR--RFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 (160) Q Consensus 8 ~~~~~~~~~~riLgiD~G~--k-riGiAisd~~~--~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP 76 (160) =|+..++|..+||++|.-. - --|..+ .... .-..+++ +...+..-+++++.+++++++|..|++|.- T Consensus 123 v~~all~PGD~il~l~l~~GGHlshg~~~-~~~~~~~~~~~y~-~d~~~~~ID~d~~~~~a~~~kPklIi~G~S 194 (447) T 3h7f_A 123 VLHALMSPGERLLGLDLANGGHLTHGMRL-NFSGKLYENGFYG-VDPATHLIDMDAVRATALEFRPKVIIAGWS 194 (447) T ss_dssp HHHHHCCTTCEEEEECGGGTCCGGGTCTT-SHHHHSSEEEEEC-CCTTTCSCCHHHHHHHHHHHCCSEEEEECS T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCC-CCCCEEEECCCCC-CCCCCCCCCHHHHHHHHHCCCCCEEEECCC T ss_conf 99997289985787304678745566545-6543022043562-562125345667999986059988997886 No 72 >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Probab=28.81 E-value=9 Score=17.93 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=25.6 Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCCEECC-------CEEEECCCCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 899839999868876899963076511012-------1011047741568989999865167758997 Q gi|254780976|r 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHP-------RPFLVRKKVTQTALELLSFITTENIAAFIIG 74 (160) Q Consensus 14 ~~~~riLgiD~G~kriGiAisd~~~~~a~P-------l~~i~~~~~~~~~~~l~~ii~e~~i~~iVvG 74 (160) +.+++|+=||||.+++- .|++- .++++.+. ... .+++.++++||+. T Consensus 22 ~~~~~I~iiDfGsq~~~--------lI~R~lrelgv~~eI~p~~~---~~~----~i~~~~~dgIIlS 74 (218) T 2vpi_A 22 SMEGAVVILDAGAQYGK--------VIDRRVRELFVQSEIFPLET---PAF----AIKEQGFRAIIIS 74 (218) T ss_dssp -CTTCEEEEECSTTTTH--------HHHHHHHHTTCCEEEECTTC---CHH----HHHHHTCSEEEEE T ss_pred CCCCCEEEEECCCHHHH--------HHHHHHHHCCCEEEEECCCC---CHH----HHHHCCCCEEEEE T ss_conf 68898999989964889--------99999871696699988999---989----9985398989990 No 73 >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Probab=28.60 E-value=29 Score=14.86 Aligned_cols=52 Identities=8% Similarity=-0.033 Sum_probs=30.5 Q ss_pred CCCCCEEEEECCCCEEEEEEEECC-C-CEECCCEEEE---CCCCCHHHHHHHHHHHH Q ss_conf 899839999868876899963076-5-1101210110---47741568989999865 Q gi|254780976|r 14 KPNQPIASIDLGTKRIGLAISDPG-R-RFAHPRPFLV---RKKVTQTALELLSFITT 65 (160) Q Consensus 14 ~~~~riLgiD~G~kriGiAisd~~-~-~~a~Pl~~i~---~~~~~~~~~~l~~ii~e 65 (160) ..+.-++|||.|+..+=+++-|.. + ..+......+ ..+-+..|..+.+.+++ T Consensus 2 ~~~~lv~GiD~GTss~Ka~l~d~~~g~i~~~~~~~~p~~~eqd~~~~~~~~~~~~~~ 58 (515) T 3i8b_A 2 SLRTLVAGVDTSTQSCKVRVTDAETGELVRFGQAKHPNGTSVDPSYWWSAFQEAAEQ 58 (515) T ss_dssp CCSCEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCSSSEECTHHHHHHHHHHHHH T ss_pred CCCCEEEEEEECHHCEEEEEEECCCCEEEEEEECCCCCCEEECHHHHHHHHHHHHHH T ss_conf 978589999860002163789899997999996249898889999999999999996 No 74 >1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus pcc 7942} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A* Probab=28.35 E-value=29 Score=14.83 Aligned_cols=13 Identities=38% Similarity=0.450 Sum_probs=5.8 Q ss_pred CEEEEEECCCCCC Q ss_conf 7589972135788 Q gi|254780976|r 69 AAFIIGLPLNMNG 81 (160) Q Consensus 69 ~~iVvGlP~~~~g 81 (160) +.+|+|-|-.-+| T Consensus 48 d~li~g~sT~g~G 60 (169) T 1czn_A 48 DYLIIGCPTWNVG 60 (169) T ss_dssp SEEEEECCEETTT T ss_pred CEEEEEECCCCCC T ss_conf 8579995157899 No 75 >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Probab=28.30 E-value=29 Score=14.83 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=21.3 Q ss_pred CCCCEEEEECCCCEEEEEEEECCCCE Q ss_conf 99839999868876899963076511 Q gi|254780976|r 15 PNQPIASIDLGTKRIGLAISDPGRRF 40 (160) Q Consensus 15 ~~~riLgiD~G~kriGiAisd~~~~~ 40 (160) .|+-+||||.|+.-+=+++-|..+.+ T Consensus 2 ~mkYvlgIDiGTts~Ka~l~d~~g~i 27 (504) T 3ll3_A 2 SLKYIIGMDVGTTATKGVLYDINGKA 27 (504) T ss_dssp CCEEEEEEEECSSEEEEEEEETTSCE T ss_pred CCCEEEEEECCCCCEEEEEECCCCCE T ss_conf 97789999753444276699189989 No 76 >3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Probab=28.27 E-value=29 Score=14.82 Aligned_cols=128 Identities=10% Similarity=0.079 Sum_probs=68.8 Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCCEECCCEEEE--CC-------CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC Q ss_conf 89983999986887689996307651101210110--47-------7415689899998651677589972135788888 Q gi|254780976|r 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RK-------KVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84 (160) Q Consensus 14 ~~~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~--~~-------~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~ 84 (160) .+..-+..+|.+.--+++........+.. .... .+ ........+...+..+++..|||+=|- T Consensus 145 ~~~~~i~~v~~~e~~~~i~~~~~i~~~~~--~~~~~~~k~~~~~~~~~~~i~~~l~~~~~~~~~~~IIIaGPG------- 215 (364) T 3obw_A 145 RSRIIIALVDFDEYLIAIPFEQGIKILSE--KSLRPLNEEEGIIEQNALEIATELAEYVKQYDPDAILLAGPG------- 215 (364) T ss_dssp CCCEEEEEEETTEEEEEEECSSCEECCCE--EECGGGCSSTTHHHHHHHHHHHHHHHHHHHHCCSEEEEECSS------- T ss_pred CCCEEEEEEECCCEEEEEEECCCEEEEEE--EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC------- T ss_conf 56358999976860899991102699999--810477677757888999999999998766069889998891------- Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4479999999999840489977998367167999999998698644546437899899999999968645 Q gi|254780976|r 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154 (160) Q Consensus 85 ~~~~~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~~~ 154 (160) . .-..|.+.+.....+..+..++-.++...+-+.+...+. ..+.-+........-+||.|++.++. T Consensus 216 f---~k~~f~~~l~~~~~~k~~~v~~~s~~~~~gl~Evl~~~~-v~~~l~~~k~~~e~~~le~f~~~l~k 281 (364) T 3obw_A 216 F---FKEEVSKKVNAILKNKKIYIDSVSSATRAGLHEVLKRDI-IDKIMTDYEIAIGAKKMEKAMELLAK 281 (364) T ss_dssp S---HHHHHHHHHHTTTCCSEEEEECCSCSSHHHHHHHHTSHH-HHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred H---HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 5---889999988888644627999568787088776653747-89998877799999999999999736 No 77 >3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} Probab=27.96 E-value=30 Score=14.79 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=17.1 Q ss_pred CCEEEEECCCCEEEEEEEEC Q ss_conf 83999986887689996307 Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDP 36 (160) Q Consensus 17 ~riLgiD~G~kriGiAisd~ 36 (160) +-+||||.|+..+=+++-|. T Consensus 5 ky~LgIDiGTts~Ka~l~D~ 24 (572) T 3jvp_A 5 KYTIGVDYGTESGRAVLIDL 24 (572) T ss_dssp CEEEEEEECSSEEEEEEEET T ss_pred EEEEEEEECCCCEEEEEEEC T ss_conf 17999972465528899988 No 78 >1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Probab=27.73 E-value=30 Score=14.77 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCC Q ss_conf 568989999865167758997213578888844799999999998404899779983671 Q gi|254780976|r 54 QTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERL 113 (160) Q Consensus 54 ~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~DEr~ 113 (160) .....|.+.+++++++.+|+|-.- ..+-..... -..+..+..+ ..+||..+-++- T Consensus 107 ~~~~~I~~~a~~~~~DlIVvG~~~-~~~~~~~~~---GS~s~~l~~~-a~~PVlvVr~~~ 161 (162) T 1mjh_A 107 IPHEEIVKIAEDEGVDIIIMGSHG-KTNLKEILL---GSVTENVIKK-SNKPVLVVKRKN 161 (162) T ss_dssp CHHHHHHHHHHHTTCSEEEEESCC-SSCCTTCSS---CHHHHHHHHH-CCSCEEEECCCC T ss_pred CHHHHHHHHHCCCCCCEEEECCCC-CCCCCCCCC---CCHHHHHHHC-CCCCEEEECCCC T ss_conf 789999987335658989984789-986554610---7499999960-899999984999 No 79 >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* Probab=25.98 E-value=32 Score=14.57 Aligned_cols=94 Identities=16% Similarity=0.158 Sum_probs=58.1 Q ss_pred CEEEEECCCCEEEEEEEECCCCEECCCEEEECCCC--------CHHHHHHH----HHHHH-----HCCCEEEEEECCCCC Q ss_conf 39999868876899963076511012101104774--------15689899----99865-----167758997213578 Q gi|254780976|r 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--------TQTALELL----SFITT-----ENIAAFIIGLPLNMN 80 (160) Q Consensus 18 riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~--------~~~~~~l~----~ii~e-----~~i~~iVvGlP~~~~ 80 (160) .|||||=-..-+++|+-|....++.-...+..+.. .+..+.|. +.+++ .+++.|.++..- T Consensus 2 ~iLgIeTScd~tsvAi~~~~~il~~~~~~~~~~~GGvvP~~A~r~H~~~l~~~i~~~l~~a~i~~~~id~iavt~gP--- 78 (330) T 2ivn_A 2 LALGIEGTAHTLGIGIVSEDKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQGP--- 78 (330) T ss_dssp CEEEEECSSSEEEEEEECSSCEEEEEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEEEEES--- T ss_pred EEEEEECCCHHHEEEEEECCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCC--- T ss_conf 09999836440289999899999998883126779858589999999999999999999849985568668881289--- Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHH Q ss_conf 8888447999999999984048997799836716799999 Q gi|254780976|r 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 (160) Q Consensus 81 g~~~~~~~~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~ 120 (160) |. ......-..|++.|. ...++|+.-+ ++.+|.- T Consensus 79 G~-~~~L~vG~~~Ak~la-~~~~~P~i~v----~Hl~aH~ 112 (330) T 2ivn_A 79 GL-GPALRVVATAARALA-VKYRKPIVGV----NHCIAHV 112 (330) T ss_dssp SC-HHHHHHHHHHHHHHH-HHTTCCEEEE----EHHHHHH T ss_pred CC-CCCHHHHHHHHHHHH-HHCCCCEEEE----CCHHHHH T ss_conf 84-102699999999999-8608763762----6399999 No 80 >3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} Probab=24.99 E-value=34 Score=14.46 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=15.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 56898999986516775899721 Q gi|254780976|r 54 QTALELLSFITTENIAAFIIGLP 76 (160) Q Consensus 54 ~~~~~l~~ii~e~~i~~iVvGlP 76 (160) .....|.+.+++++++.+|+|-. T Consensus 97 ~~~~~I~~~a~~~~~dliV~G~~ 119 (147) T 3hgm_A 97 RPSRTIVRFARKRECDLVVIGAQ 119 (147) T ss_dssp CHHHHHHHHHHHTTCSEEEECSS T ss_pred CHHHHHHHHHCCCCCCEEEECCC T ss_conf 78998877520358888997179 No 81 >1e4f_T Cell division protein FTSA; bacterial cell division, actin family; 1.9A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1e4g_T* Probab=24.39 E-value=35 Score=14.39 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=18.7 Q ss_pred HHCCCCCCEEEEECCCCEEEEEEE Q ss_conf 835899839999868876899963 Q gi|254780976|r 11 KSLKPNQPIASIDLGTKRIGLAIS 34 (160) Q Consensus 11 ~~~~~~~riLgiD~G~kriGiAis 34 (160) ..|.+..-+.|||.|+.+|=+.++ T Consensus 2 ~~m~k~~~~vgiDIGSs~Ik~vv~ 25 (419) T 1e4f_T 2 IDLSKTVFYTSIDIGSRYIKGLVL 25 (419) T ss_dssp -----CEEEEEEEECSSEEEEEEE T ss_pred CCCCCCCEEEEEECCCCEEEEEEE T ss_conf 877768869999987561999999 No 82 >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis} Probab=22.69 E-value=38 Score=14.19 Aligned_cols=56 Identities=7% Similarity=0.066 Sum_probs=40.9 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC Q ss_conf 7415689899998651677589972135788888447999999999984048997799836 Q gi|254780976|r 51 KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDE 111 (160) Q Consensus 51 ~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~DE 111 (160) .......++.+..++.+++.+++..|.-... ++ +.+.+|.+.+.+. .++||.+++= T Consensus 79 ~~~~~ai~~a~~a~~~G~d~i~~~~P~~~~~--~~--~~~~~~f~~i~~a-~~iPi~lYn~ 134 (297) T 2rfg_A 79 NNPVEAVRYAQHAQQAGADAVLCVAGYYNRP--SQ--EGLYQHFKMVHDA-IDIPIIVYNI 134 (297) T ss_dssp SSHHHHHHHHHHHHHHTCSEEEECCCTTTCC--CH--HHHHHHHHHHHHH-CSSCEEEEEC T ss_pred HHHHHHHHHHHHHHHHCCCEEECCCCCCCCC--CH--HHHHHHHHHHHHH-CCCCEEEEEC T ss_conf 0199999999999980999897068878898--99--9999999999986-7997899978 No 83 >3djc_A Type III pantothenate kinase; structural genomics, putative transferase, PSI-2, protein structure initiative; 2.40A {Legionella pneumophila subsp} Probab=21.50 E-value=40 Score=14.04 Aligned_cols=85 Identities=14% Similarity=0.044 Sum_probs=42.5 Q ss_pred CEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHH-----CCCEEEEEECCCCCCCCCHHHHHHHH Q ss_conf 3999986887689996307651101210110477415689899998651-----67758997213578888844799999 Q gi|254780976|r 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-----NIAAFIIGLPLNMNGSEGPRVHSTRA 92 (160) Q Consensus 18 riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~-----~i~~iVvGlP~~~~g~~~~~~~~v~~ 92 (160) =+|.||.|-.|+=.|+.+..........+-.....+.....+..+.... ++..+++.-= .+. .... T Consensus 3 M~L~IDiGNT~iK~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~v~~ssV-------vp~--~~~~ 73 (266) T 3djc_A 3 LILCIDVGNSHIYGGVFDGDEIKLRFRHTSKVSTSDELGIFLKSVLRENNCSPETIRKIAICSV-------VPQ--VDYS 73 (266) T ss_dssp CEEEEEECSSEEEEEEEETTEEEEEEEEECSCCCHHHHHHHHHHHHHTTTCCGGGCCEEEEEES-------CHH--HHHH T ss_pred EEEEEEECCCCCEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCEEEEEEE-------CHH--HHHH T ss_conf 6999998677109999989999999971687678889999999998764897321555799985-------568--8999 Q ss_pred HHHHHHHHCCCCCEEEECCC Q ss_conf 99999840489977998367 Q gi|254780976|r 93 FVHNMIDRKVYVPFVFWDER 112 (160) Q Consensus 93 f~~~L~~~~~~l~v~~~DEr 112 (160) +.. ...+.+++++.+++.. T Consensus 74 l~~-~~~~~~~~~~~~~~~~ 92 (266) T 3djc_A 74 LRS-ACVKYFSIDPFLLQAG 92 (266) T ss_dssp HHH-HHHHHTCCCCEECCSS T ss_pred HHH-HHHHHCCCCCCEECHH T ss_conf 999-9987525675111000 No 84 >2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Probab=20.77 E-value=41 Score=13.95 Aligned_cols=50 Identities=10% Similarity=0.087 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 6898999986516775899721357888884479999999999840489977998 Q gi|254780976|r 55 TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 (160) Q Consensus 55 ~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~ 109 (160) ....|.+.+++.+++.+|+|-+-. ++-...... ..+..+... ..+||..+ T Consensus 87 ~~~~I~~~a~~~~~dliV~G~~~~-s~~~~~~~G---s~~~~vl~~-~~~pVlvV 136 (137) T 2z08_A 87 PAEAILQAARAEKADLIVMGTRGL-GALGSLFLG---SQSQRVVAE-APCPVLLV 136 (137) T ss_dssp HHHHHHHHHHHTTCSEEEEESSCT-TCCSCSSSC---HHHHHHHHH-CSSCEEEE T ss_pred HHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCCC---CHHHHHHHC-CCCCEEEE T ss_conf 489899876635688899945899-876555037---399999970-69989995 No 85 >3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Probab=20.75 E-value=41 Score=13.95 Aligned_cols=126 Identities=12% Similarity=0.125 Sum_probs=63.6 Q ss_pred CEEEEECCCCEEEEEEEECCCCEECCCEEEECCCC----------CHHHHHHHHHHH----HHCCCEEEEEECCCCCCCC Q ss_conf 39999868876899963076511012101104774----------156898999986----5167758997213578888 Q gi|254780976|r 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV----------TQTALELLSFIT----TENIAAFIIGLPLNMNGSE 83 (160) Q Consensus 18 riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~----------~~~~~~l~~ii~----e~~i~~iVvGlP~~~~g~~ 83 (160) -++.+|-|...+++.-+......+.-...++.+.. ..++.++.+-+. ..++..||||=| T Consensus 138 ~~vvid~g~A~i~ll~~~~~~~~~~i~~~ip~K~~~~~~~~~~~~~~Ff~~i~~~l~~~~~~~~~~~iIiaGP------- 210 (390) T 3mca_B 138 GAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASP------- 210 (390) T ss_dssp EEEEEETTEEEEEEECSSCEEEEEEEECCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEES------- T ss_pred EEEEECCCCEEEEEEECCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC------- T ss_conf 9999708907999980448999999998689875688721789999999999999999845245645899275------- Q ss_pred CHHHHHHHHHHHHHHHH-C------CCCCEEEECCCCCHHHHHHHHHHCCCCHHH-HH--HHHHHHHHHHHHHHHHHHHH Q ss_conf 84479999999999840-4------899779983671679999999986986445-46--43789989999999996864 Q gi|254780976|r 84 GPRVHSTRAFVHNMIDR-K------VYVPFVFWDERLTTVSAQQILIDMNVSRKK-RI--QKVDSIAAALILQEVLDRIS 153 (160) Q Consensus 84 ~~~~~~v~~f~~~L~~~-~------~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~-~k--~~iD~~AA~iILq~~Ld~~~ 153 (160) +..-....++....... . ..-.+..+|-.++...+-+.+ +++.. .+ ...-.....-+|+.|+..++ T Consensus 211 Gf~k~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~s~g~~~gl~Ev----L~~~~~~~~l~~~~~~~e~~~le~f~~~l~ 286 (390) T 3mca_B 211 GFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEI----LKDPAVESKLADTKYVQEIRVLNKFYDVMN 286 (390) T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHGGGEEEEECSCSSGGGGGTS----SSCHHHHHHHTTSHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6899999998887645542334554136179996057862659999----736568888776889999999999999984 Q ss_pred H Q ss_conf 5 Q gi|254780976|r 154 F 154 (160) Q Consensus 154 ~ 154 (160) . T Consensus 287 k 287 (390) T 3mca_B 287 E 287 (390) T ss_dssp H T ss_pred C T ss_conf 5 No 86 >1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A* Probab=20.35 E-value=42 Score=13.89 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=41.3 Q ss_pred HHHHHHHHHCCCEEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCC Q ss_conf 899998651677589972135788-88844799999999998404899779983671679999999986986 Q gi|254780976|r 58 ELLSFITTENIAAFIIGLPLNMNG-SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128 (160) Q Consensus 58 ~l~~ii~e~~i~~iVvGlP~~~~g-~~~~~~~~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~ 128 (160) .....+++|+++.+|+.-| |+ .++|.. ++++.+ ..++|+.-+-..-|.+ +++.|.+.|.. T Consensus 55 ~~~~~~~~~~pDf~I~isP---N~~~PGP~~------ARE~l~-~~~iP~IvI~D~p~~K-~kd~l~~~g~G 115 (283) T 1qv9_A 55 MALDIAEDFEPDFIVYGGP---NPAAPGPSK------AREMLA-DSEYPAVIIGDAPGLK-VKDEMEEQGLG 115 (283) T ss_dssp HHHHHHHHHCCSEEEEECS---CTTSHHHHH------HHHHHH-TSSSCEEEEEEGGGGG-GHHHHHHTTCE T ss_pred HHHHHHHHCCCCEEEEECC---CCCCCCCHH------HHHHHH-HCCCCEEEECCCCCHH-HHHHHHHCCCC T ss_conf 8777887408998999789---988999567------999997-4799879982786344-68999865984 No 87 >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus VF5} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Probab=20.25 E-value=42 Score=13.88 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=66.4 Q ss_pred HHCCCCCCEEEEECCCCEEEEEEEECCC---CEECCCEEEECCC--------CCHHHHHHHHHHHHH-----CCCEEEEE Q ss_conf 8358998399998688768999630765---1101210110477--------415689899998651-----67758997 Q gi|254780976|r 11 KSLKPNQPIASIDLGTKRIGLAISDPGR---RFAHPRPFLVRKK--------VTQTALELLSFITTE-----NIAAFIIG 74 (160) Q Consensus 11 ~~~~~~~riLgiD~G~kriGiAisd~~~---~~a~Pl~~i~~~~--------~~~~~~~l~~ii~e~-----~i~~iVvG 74 (160) ....+.+..|-+|.|---+-+++.+... ..++|++++.-.+ ....+..+.+.+.++ ....-++| T Consensus 132 ~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrL~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ig 211 (315) T 1t6c_A 132 YSLKPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKRFFEFLEKELSKVKKPVDTIVG 211 (315) T ss_dssp HHTCCCSEEEEEEEETTEEEEEEEETTEEEEEEEECCCHHHHHHHHCCSSSCCHHHHHHHHHHHHHHHTTTCCCCSEEEE T ss_pred CCCCCCCCEEEEEECCCCEEEEEEECCCEEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 13578888799970798478999651733467774415788998852579977899999999999998642255566999 Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE-CCCCCHHHHHHHHHHC-CCCHHHHH--------HHHHH-HHHHH Q ss_conf 21357888884479999999999840489977998-3671679999999986-98644546--------43789-98999 Q gi|254780976|r 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDM-NVSRKKRI--------QKVDS-IAAAL 143 (160) Q Consensus 75 lP~~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~-DEr~TS~~A~~~l~~~-g~~~k~~k--------~~iD~-~AA~i 143 (160) . .| .++.++. +.......|...+ .-.+|..+.++.+... .++...+. .+.|- .+|++ T Consensus 212 ~----gG-------t~~~la~-i~~~~~~~~~~~i~~~~l~~~~l~~~~~~l~~~~~~er~~~~~~i~~~Radii~~g~~ 279 (315) T 1t6c_A 212 L----GG-------TITTLAA-LEYNVYPYDPQKVHGKVLTYGQIKKWFDTFKEIPSEERSKRFRQVEDRRAKVILAGIG 279 (315) T ss_dssp E----SH-------HHHHHHH-HHTTCCSCCHHHHTTCEEEHHHHHHHHHHHTTSCHHHHHHHSTTSCGGGTTTHHHHHH T ss_pred E----CC-------CHHHHHH-HHHHHCCCCCHHCCCEEECHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 5----56-------2999999-9865023781000442311899999999998199999997648999678885999999 Q ss_pred HHHHHHHHHH Q ss_conf 9999996864 Q gi|254780976|r 144 ILQEVLDRIS 153 (160) Q Consensus 144 ILq~~Ld~~~ 153 (160) ||+..|+..+ T Consensus 280 il~~il~~~~ 289 (315) T 1t6c_A 280 IFLKTLEIFE 289 (315) T ss_dssp HHHHHHHHHT T ss_pred HHHHHHHHHC T ss_conf 9999999719 No 88 >2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1 Probab=20.08 E-value=43 Score=13.86 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=8.6 Q ss_pred CCEEEEEECCCCCCCCC Q ss_conf 77589972135788888 Q gi|254780976|r 68 IAAFIIGLPLNMNGSEG 84 (160) Q Consensus 68 i~~iVvGlP~~~~g~~~ 84 (160) -+.+|+|.|-.-+|... T Consensus 46 ~d~lI~g~sT~g~G~~p 62 (173) T 2fcr_A 46 YDLLFLGAPTWNTGADT 62 (173) T ss_dssp CSEEEEEEECCSTTCSS T ss_pred CCEEEEEEEECCCCCCC T ss_conf 67279998416899895 Done!