HHSEARCH alignment of GI: 254780976 and SCOP domain: d1vhxa_

Alignment
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}
Probab=100.00  E-value=2.6e-42  Score=273.94  Aligned_cols=138  Identities=36%  Similarity=0.554  Sum_probs=128.9

Q ss_pred             CCCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCC--HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             98399998688768999630765110121011047741--5689899998651677589972135788888447999999
Q gi|254780976|r   16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAF   93 (160)
Q Consensus        16 ~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~--~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f   93 (160)
                      +.|+||||||+||||+|+||+.+.+|+|+.++.+++..  ..+.+|.+++++|+|+.||||+|++++|+++++++.++.|
T Consensus         1 ~mriLgiD~G~kriGvAisd~~~~~a~pl~~i~~~~~~~~~~~~~l~~ii~e~~i~~iViGlP~~~dg~~~~~~~~~~~f   80 (140)
T d1vhxa_           1 SLRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTF   80 (140)
T ss_dssp             CEEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHH
T ss_pred             CCEEEEEEECCCEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             95199998279989999945998822551668612566416899999999851656599835522478613677888999


Q ss_pred             HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999840489977998367167999999998698644546437899899999999968645
Q gi|254780976|r   94 VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF  154 (160)
Q Consensus        94 ~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~~~  154 (160)
                      ++.|. +.+++||++|||||||++|++.+++.|++++++|+.+|++||++|||+|||++|.
T Consensus        81 ~~~l~-~~~~i~V~~~DEr~TS~~A~~~l~~~~~~~~~~k~~iD~~AA~iILe~~L~~~n~  140 (140)
T d1vhxa_          81 AKVLE-TTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVIDKMAAVMILQGYLDSLNE  140 (140)
T ss_dssp             HHHHH-HHHCSCEEEECCSSCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHC-CCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             99834-6778557984144379999999997699700034147799999999999997468


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YrrK (RuvX)
species: Bacillus subtilis [TaxId: 1423]