HHSEARCH alignment of GI: 254780976 and SCOP domain: d2gupa1

Alignment
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=96.00  E-value=0.012  Score=33.94  Aligned_cols=93  Identities=15%  Similarity=0.245  Sum_probs=60.4

Q ss_pred             CCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC--CCCC-CC--CCHHHHHHH
Q ss_conf             839999868876899963076511012101104774156898999986516775899721--3578-88--884479999
Q gi|254780976|r   17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP--LNMN-GS--EGPRVHSTR   91 (160)
Q Consensus        17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP--~~~~-g~--~~~~~~~v~   91 (160)
                      ++++|||.|-.++=+|+.|..+.+-.....-...+....+..+.+.+.++++.++-||.|  ++.+ |.  .++......
T Consensus         1 M~i~~iDiGgT~i~~~l~d~~g~i~~~~~~~t~~~~~~~~~~i~~~~~~~~i~gIGi~~pG~vd~~~g~i~~~~~l~~~~   80 (114)
T d2gupa1           1 MTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYIH   80 (114)
T ss_dssp             CCEEEEEEETTEEEEEEECTTCCEEEEEEECCCSSHHHHHHHHHHHHTTSCCSEEEEEESSEECTTTCBEESCCSSGGGS
T ss_pred             CEEEEEEECCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCCCCCC
T ss_conf             96999996810399999909997999999714355999999999986114453599965665357753897444567545


Q ss_pred             --HHHHHHHHHCCCCCEEEECC
Q ss_conf             --99999984048997799836
Q gi|254780976|r   92 --AFVHNMIDRKVYVPFVFWDE  111 (160)
Q Consensus        92 --~f~~~L~~~~~~l~v~~~DE  111 (160)
                        .+.+ +.++ +++||++-+.
T Consensus        81 ~~~l~~-~l~~-~~~pV~veND  100 (114)
T d2gupa1          81 GFSWYE-ALSS-YQLPVHLEND  100 (114)
T ss_dssp             SSBHHH-HTGG-GCCCEEEEEH
T ss_pred             CCCHHH-HHHH-CCCCEEEEHH
T ss_conf             883799-9986-7997999719


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]