Query gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 160
No_of_seqs 112 out of 1903
Neff 6.3
Searched_HMMs 13730
Date Wed Jun 1 11:04:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780976.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vhxa_ c.55.3.8 (A:) Hypothet 100.0 2.6E-42 0 273.9 15.8 138 16-154 1-140 (140)
2 d1nu0a_ c.55.3.8 (A:) Hypothet 100.0 3.8E-43 0 279.0 10.7 136 16-152 2-137 (138)
3 d1iv0a_ c.55.3.8 (A:) Hypothet 100.0 4.4E-31 3.2E-35 205.9 8.9 98 17-116 1-98 (98)
4 d3bzka5 c.55.3.13 (A:325-473) 98.5 1.2E-06 8.7E-11 58.1 11.5 101 15-124 3-115 (149)
5 d1hjra_ c.55.3.6 (A:) RuvC res 97.7 0.0016 1.2E-07 39.2 14.5 99 19-122 3-110 (158)
6 d1xc3a1 c.55.1.10 (A:1-118) Pu 96.0 0.017 1.2E-06 33.0 7.8 99 19-119 2-111 (118)
7 d2gupa1 c.55.1.10 (A:1-114) Hy 96.0 0.012 8.6E-07 33.9 6.9 93 17-111 1-100 (114)
8 d2aa4a1 c.55.1.10 (A:1-119) N- 95.7 0.021 1.5E-06 32.5 7.1 95 17-112 1-106 (119)
9 d2ap1a2 c.55.1.10 (A:1-117) Pu 94.7 0.091 6.6E-06 28.6 8.0 93 19-112 2-106 (117)
10 d1q18a1 c.55.1.7 (A:2-111) Glu 94.5 0.046 3.4E-06 30.3 6.0 68 17-84 2-71 (110)
11 d1sz2a1 c.55.1.7 (A:3-321) Glu 94.3 0.092 6.7E-06 28.6 7.2 63 18-80 2-66 (319)
12 d1z6ra2 c.55.1.10 (A:82-210) M 93.8 0.063 4.6E-06 29.5 5.5 106 16-122 3-125 (129)
13 d1z05a3 c.55.1.10 (A:81-208) T 93.7 0.049 3.5E-06 30.2 4.9 104 17-121 4-123 (128)
14 d1okja1 c.55.1.9 (A:1-106) Hyp 93.4 0.24 1.8E-05 26.0 10.9 92 18-119 1-97 (106)
15 d1dkgd1 c.55.1.1 (D:3-185) Hea 91.3 0.061 4.4E-06 29.6 2.8 21 18-38 1-21 (183)
16 d1bupa1 c.55.1.1 (A:4-188) Hea 91.0 0.084 6.1E-06 28.8 3.2 22 17-38 1-22 (185)
17 d1huxa_ c.55.1.5 (A:) Hydroxyg 90.8 0.5 3.6E-05 24.1 7.0 51 17-67 2-52 (259)
18 d2hoea3 c.55.1.10 (A:72-199) N 90.4 0.43 3.1E-05 24.5 6.4 104 16-120 3-123 (128)
19 d1woqa1 c.55.1.10 (A:11-139) I 90.1 0.25 1.8E-05 25.9 5.0 102 16-118 1-120 (129)
20 d1zc6a1 c.55.1.5 (A:8-121) Pro 87.9 0.61 4.4E-05 23.6 5.7 51 14-64 1-54 (114)
21 d1jcea1 c.55.1.1 (A:4-140) Pro 79.4 0.62 4.5E-05 23.5 2.8 26 18-43 1-26 (137)
22 d2ewsa1 c.55.1.14 (A:1-267) Ty 68.6 3.6 0.00026 18.9 6.2 51 20-77 3-53 (267)
23 d2p3ra1 c.55.1.4 (A:2-253) Gly 57.9 5.4 0.00039 17.9 3.7 25 16-40 2-26 (252)
24 d1kl1a_ c.67.1.4 (A:) Serine h 57.0 5.8 0.00042 17.7 3.8 63 8-77 101-173 (405)
25 d1t6ca1 c.55.1.8 (A:7-132) Exo 55.5 6.2 0.00045 17.5 6.6 89 15-110 1-109 (126)
26 d1twda_ c.1.30.1 (A:) Copper h 53.4 6.7 0.00049 17.3 7.6 83 40-129 49-143 (247)
27 d1kcfa2 c.55.3.7 (A:39-256) Mi 47.3 8.4 0.00061 16.7 9.4 67 17-83 2-88 (218)
28 d2a7va1 c.67.1.4 (A:26-488) Se 44.1 7.6 0.00055 17.0 2.7 68 7-76 108-185 (463)
29 d1wb9a3 c.55.6.1 (A:117-269) D 42.1 10 0.00074 16.2 8.3 115 15-153 13-132 (153)
30 d2a6aa1 c.55.1.9 (A:1-103) Hyp 37.9 12 0.00086 15.8 11.3 90 17-118 1-96 (103)
31 d1rv3a_ c.67.1.4 (A:) Serine h 34.6 11 0.00083 15.9 2.4 68 8-76 113-189 (470)
32 d1dfoa_ c.67.1.4 (A:) Serine h 34.3 8.4 0.00061 16.7 1.7 66 8-76 104-174 (416)
33 d1r59o1 c.55.1.4 (O:5-256) Gly 33.4 6.9 0.0005 17.2 1.1 21 19-39 3-23 (252)
34 d2nu7b1 c.23.4.1 (B:239-388) S 30.2 16 0.0011 15.0 9.1 73 54-130 59-131 (150)
35 d1eucb1 c.23.4.1 (B:246-393) S 29.6 16 0.0012 15.0 8.1 73 54-130 59-131 (148)
36 d1hyoa1 b.34.8.1 (A:1-118) Fum 28.8 11 0.00077 16.1 1.4 16 25-40 28-43 (118)
37 d1tq8a_ c.26.2.4 (A:) Hypothet 28.3 17 0.0012 14.8 5.0 52 54-110 94-145 (147)
38 d1mjha_ c.26.2.4 (A:) "Hypothe 28.1 17 0.0012 14.8 4.3 56 54-114 105-160 (160)
39 d2z3va1 c.26.2.4 (A:2-136) Hyp 24.1 20 0.0015 14.4 3.6 50 55-109 86-135 (135)
40 d1yoba1 c.23.5.1 (A:1-179) Fla 24.0 20 0.0015 14.3 4.6 14 69-82 48-61 (179)
41 d1oboa_ c.23.5.1 (A:) Flavodox 20.5 23 0.0017 14.0 1.9 39 68-109 47-86 (169)
No 1
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}
Probab=100.00 E-value=2.6e-42 Score=273.94 Aligned_cols=138 Identities=36% Similarity=0.554 Sum_probs=128.9
Q ss_pred CCCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCC--HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 98399998688768999630765110121011047741--5689899998651677589972135788888447999999
Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAF 93 (160)
Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~--~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f 93 (160)
+.|+||||||+||||+|+||+.+.+|+|+.++.+++.. ..+.+|.+++++|+|+.||||+|++++|+++++++.++.|
T Consensus 1 ~mriLgiD~G~kriGvAisd~~~~~a~pl~~i~~~~~~~~~~~~~l~~ii~e~~i~~iViGlP~~~dg~~~~~~~~~~~f 80 (140)
T d1vhxa_ 1 SLRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTF 80 (140)
T ss_dssp CEEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHH
T ss_pred CCEEEEEEECCCEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 95199998279989999945998822551668612566416899999999851656599835522478613677888999
Q ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999840489977998367167999999998698644546437899899999999968645
Q gi|254780976|r 94 VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154 (160)
Q Consensus 94 ~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~~~ 154 (160)
++.|. +.+++||++|||||||++|++.+++.|++++++|+.+|++||++|||+|||++|.
T Consensus 81 ~~~l~-~~~~i~V~~~DEr~TS~~A~~~l~~~~~~~~~~k~~iD~~AA~iILe~~L~~~n~ 140 (140)
T d1vhxa_ 81 AKVLE-TTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVIDKMAAVMILQGYLDSLNE 140 (140)
T ss_dssp HHHHH-HHHCSCEEEECCSSCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHC-CCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99834-6778557984144379999999997699700034147799999999999997468
No 2
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=3.8e-43 Score=278.97 Aligned_cols=136 Identities=29% Similarity=0.404 Sum_probs=130.6
Q ss_pred CCCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 98399998688768999630765110121011047741568989999865167758997213578888844799999999
Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVH 95 (160)
Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~ 95 (160)
.+|+||||||+||||+|+||+.+.+|+|++++.+++..+++.+|..++++|+|+.||||+|++++|+++++++.++.|++
T Consensus 2 ~griLgiD~G~kriGvAvsd~~~~~a~pl~~i~~~~~~~~~~~l~~i~~e~~~~~iVvG~P~~~~g~~~~~~~~v~~f~~ 81 (138)
T d1nu0a_ 2 SGTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFAN 81 (138)
T ss_dssp CCEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 97489999389989999937987742542555503640569999987540476389961432235555799999999999
Q ss_pred HHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998404899779983671679999999986986445464378998999999999686
Q gi|254780976|r 96 NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152 (160)
Q Consensus 96 ~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k~~k~~iD~~AA~iILq~~Ld~~ 152 (160)
+|.. .+++||++|||||||++|++.+++.|.+++++++.+|++||++|||+|||+.
T Consensus 82 ~L~~-~~~i~V~~~DEr~TS~eA~~~l~~~~~~~~~~k~~iD~~AA~lILq~~L~~~ 137 (138)
T d1nu0a_ 82 RIHG-RFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYMEQG 137 (138)
T ss_dssp HHHH-HHCCCEEEEEEECCCCCC-------CCCCCCCHHHHTTHHHHHHHHHHHHTT
T ss_pred HHHH-CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9854-5498769971532499999999973563210465465999999999999736
No 3
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}
Probab=99.97 E-value=4.4e-31 Score=205.95 Aligned_cols=98 Identities=32% Similarity=0.568 Sum_probs=93.5
Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 83999986887689996307651101210110477415689899998651677589972135788888447999999999
Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96 (160)
Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~ 96 (160)
.|+||||||+||||+|+||+.+.+|+|++++.+++..+++.+|.+++++|+|+.||||+|++|||+++++++.+++|+++
T Consensus 1 MriLglD~G~kriGiAisd~~~~~a~pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~dG~~~~~~~~v~~f~~~ 80 (98)
T d1iv0a_ 1 MRVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEA 80 (98)
T ss_dssp CCEEEEEESSSEEEEEEECSCCSSCCCEEEEECCCHHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHH
T ss_pred CCEEEEECCCCEEEEEEECCCCCEECCEEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 94999980899899999149998494568898778467899999999863301057166322379837889999999999
Q ss_pred HHHHCCCCCEEEECCCCCHH
Q ss_conf 98404899779983671679
Q gi|254780976|r 97 MIDRKVYVPFVFWDERLTTV 116 (160)
Q Consensus 97 L~~~~~~l~v~~~DEr~TS~ 116 (160)
|. . .++||++|||||||+
T Consensus 81 L~-~-~~lpv~~~DErlTSk 98 (98)
T d1iv0a_ 81 LR-A-RGVEVELWDERFTTK 98 (98)
T ss_dssp HH-H-TTCEEEEECCSCCCC
T ss_pred HH-H-CCCCEEEECCCCCCC
T ss_conf 96-4-799999986898888
No 4
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=98.49 E-value=1.2e-06 Score=58.10 Aligned_cols=101 Identities=16% Similarity=0.239 Sum_probs=74.7
Q ss_pred CCCCEEEEECC-CCEEEEEEEECCCCEECCCEEEE-C---CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHH
Q ss_conf 99839999868-87689996307651101210110-4---7741568989999865167758997213578888844799
Q gi|254780976|r 15 PNQPIASIDLG-TKRIGLAISDPGRRFAHPRPFLV-R---KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89 (160)
Q Consensus 15 ~~~riLgiD~G-~kriGiAisd~~~~~a~Pl~~i~-~---~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~ 89 (160)
..++|||+|.| ..-|++|+-|..+.+-- ..++. . .........|.++++.++|+.|+|| ||+ .++.
T Consensus 3 ~~~~vlg~DPg~r~gck~AvlD~~G~vld-~~viyp~~~~~~~~~a~~~l~~li~k~~p~vIaIG-----NgT---asre 73 (149)
T d3bzka5 3 GPRATLGLDPGLRTGVKVAVVDATGKLLD-TATVYPHAPKNQWDQTLAVLAALCAKHQVELIAIG-----NGT---ASRE 73 (149)
T ss_dssp CSCCEEEEECCSTTCEEEEEECTTSCEEE-EEEECCSTTTCCHHHHHHHHHHHHHHTTCCEEEEE-----SST---THHH
T ss_pred CCCEEEEECCCCCCCCEEEEECCCCCEEE-EEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEC-----CCC---CHHH
T ss_conf 88558887888656618999979999899-99984379677999999999999998398699977-----985---2789
Q ss_pred HHHHHHHHHHH--CCCCCEEEECCCCCHH-----HHHHHHHH
Q ss_conf 99999999840--4899779983671679-----99999998
Q gi|254780976|r 90 TRAFVHNMIDR--KVYVPFVFWDERLTTV-----SAQQILID 124 (160)
Q Consensus 90 v~~f~~~L~~~--~~~l~v~~~DEr~TS~-----~A~~~l~~ 124 (160)
+..|...|... ..++++.++||...|. .|.+.+.+
T Consensus 74 ~~~~v~~l~~~~~~~~i~~~iV~e~gAsvYs~S~~A~~EfP~ 115 (149)
T d3bzka5 74 TDKLAGELIKKYPGMKLTKIMVSEAGASVYSASELAAKEFPE 115 (149)
T ss_dssp HHHHHHHHHHHCGGGCCEEEEECCTTHHHHHTSHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCHHHHHHCCC
T ss_conf 999999999857788868999826512543178989987789
No 5
>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]}
Probab=97.70 E-value=0.0016 Score=39.22 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=63.3
Q ss_pred EEEEECCCCEEEEEEEECCCCEEC--CCEEEECCC------CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCH-HHHH
Q ss_conf 999986887689996307651101--210110477------4156898999986516775899721357888884-4799
Q gi|254780976|r 19 IASIDLGTKRIGLAISDPGRRFAH--PRPFLVRKK------VTQTALELLSFITTENIAAFIIGLPLNMNGSEGP-RVHS 89 (160)
Q Consensus 19 iLgiD~G~kriGiAisd~~~~~a~--Pl~~i~~~~------~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~-~~~~ 89 (160)
|||||+|+.++|.|+-|..+.-.. -.+++..+. .......+.+++++|+|+.+++=-|.-..+..+. ....
T Consensus 3 ILGIDPGl~~~G~avid~~~~~~~~v~~g~i~t~~~~~~~Rl~~i~~~l~~li~~~~Pd~vaiE~~f~~~n~~sa~~l~~ 82 (158)
T d1hjra_ 3 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQ 82 (158)
T ss_dssp EEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHHH
T ss_pred EEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHCCCHHHHHHHHH
T ss_conf 99983677865899999649878999952796799876999999999999998534998789874000248899999999
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 999999998404899779983671679999999
Q gi|254780976|r 90 TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 (160)
Q Consensus 90 v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~l 122 (160)
++--+... -...++||..+ |..+.++..
T Consensus 83 arG~i~l~-a~~~~ipi~e~----~P~~vKk~v 110 (158)
T d1hjra_ 83 ARGVAIVA-AVNQELPVFEY----AARQVKQTV 110 (158)
T ss_dssp HHHHHHHH-HHTTTCCEEEE----EHHHHHHHH
T ss_pred HHHHHHHH-HHHCCCCEEEC----CHHHHHEEE
T ss_conf 99999999-99808650124----414222014
No 6
>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}
Probab=96.01 E-value=0.017 Score=33.01 Aligned_cols=99 Identities=13% Similarity=0.218 Sum_probs=65.3
Q ss_pred EEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC----------CHHHH
Q ss_conf 99998688768999630765110121011047741568989999865167758997213578888----------84479
Q gi|254780976|r 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE----------GPRVH 88 (160)
Q Consensus 19 iLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~----------~~~~~ 88 (160)
++|||.|..++-+|+.|..+.+.. ...++.......+..+.+.+.++++..+-||.|=-.+... ++...
T Consensus 2 ~~giDiGgT~i~~~l~d~~g~i~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~igi~~~G~v~~~~~~~~~g~v~~~~~~~ 80 (118)
T d1xc3a1 2 LGGIEAGGTKFVCAVGREDGTIID-RIEFPTKMPDETIEKVIQYFSQFSLQAIGIGSFGPVDNDKTSQTYGTITATPKAG 80 (118)
T ss_dssp EEEEEECSSEEEEEEECTTSCEEE-EEEEECCCHHHHHHHHHHHHTTSCCSEEEEEECSSBCCCTTSTTTTSBCCCSSTT
T ss_pred EEEEEECCCEEEEEEECCCCCEEE-EEEECCCCHHHHHHHHHHHHHHCCCEECCEEEEEEEECCCCCCCEEEEECCCCCC
T ss_conf 999996647899999959998999-9996589979999999999752144034466773234578820112997578655
Q ss_pred -HHHHHHHHHHHHCCCCCEEEECCCCCHHHHH
Q ss_conf -9999999998404899779983671679999
Q gi|254780976|r 89 -STRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119 (160)
Q Consensus 89 -~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~ 119 (160)
.-.++.+.| ++.+++||++.+.--...-|+
T Consensus 81 w~~~~l~~~l-~~~~~~pv~i~NDana~algE 111 (118)
T d1xc3a1 81 WRHYPFLQTV-KNEMKIPVGFSTDVNAAALGE 111 (118)
T ss_dssp TBTCCHHHHH-HHHHCSCEEEEEHHHHHHHHH
T ss_pred CCCCCHHHHH-HHHHCCCEEEEEHHHHHHHHH
T ss_conf 4586789999-997789989962698999999
No 7
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=96.00 E-value=0.012 Score=33.94 Aligned_cols=93 Identities=15% Similarity=0.245 Sum_probs=60.4
Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC--CCCC-CC--CCHHHHHHH
Q ss_conf 839999868876899963076511012101104774156898999986516775899721--3578-88--884479999
Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP--LNMN-GS--EGPRVHSTR 91 (160)
Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP--~~~~-g~--~~~~~~~v~ 91 (160)
++++|||.|-.++=+|+.|..+.+-.....-...+....+..+.+.+.++++.++-||.| ++.+ |. .++......
T Consensus 1 M~i~~iDiGgT~i~~~l~d~~g~i~~~~~~~t~~~~~~~~~~i~~~~~~~~i~gIGi~~pG~vd~~~g~i~~~~~l~~~~ 80 (114)
T d2gupa1 1 MTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYIH 80 (114)
T ss_dssp CCEEEEEEETTEEEEEEECTTCCEEEEEEECCCSSHHHHHHHHHHHHTTSCCSEEEEEESSEECTTTCBEESCCSSGGGS
T ss_pred CEEEEEEECCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCCCCCC
T ss_conf 96999996810399999909997999999714355999999999986114453599965665357753897444567545
Q ss_pred --HHHHHHHHHCCCCCEEEECC
Q ss_conf --99999984048997799836
Q gi|254780976|r 92 --AFVHNMIDRKVYVPFVFWDE 111 (160)
Q Consensus 92 --~f~~~L~~~~~~l~v~~~DE 111 (160)
.+.+ +.++ +++||++-+.
T Consensus 81 ~~~l~~-~l~~-~~~pV~veND 100 (114)
T d2gupa1 81 GFSWYE-ALSS-YQLPVHLEND 100 (114)
T ss_dssp SSBHHH-HTGG-GCCCEEEEEH
T ss_pred CCCHHH-HHHH-CCCCEEEEHH
T ss_conf 883799-9986-7997999719
No 8
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}
Probab=95.70 E-value=0.021 Score=32.49 Aligned_cols=95 Identities=11% Similarity=0.140 Sum_probs=57.7
Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEE-EC-CCCCHHHHHHHHHHHHH--CCCEEEEEECCCCCCC--CCHHHH--
Q ss_conf 8399998688768999630765110121011-04-77415689899998651--6775899721357888--884479--
Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VR-KKVTQTALELLSFITTE--NIAAFIIGLPLNMNGS--EGPRVH-- 88 (160)
Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i-~~-~~~~~~~~~l~~ii~e~--~i~~iVvGlP~~~~g~--~~~~~~-- 88 (160)
.++||+|.|..++=+|+.|..+.+-.-...- +. .........+.++++++ ++.++-||.|=-.+.. ....+.
T Consensus 1 M~~lgiDiGgT~i~~~l~d~~G~i~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~igI~~pG~v~~~~~~~~~~~~l 80 (119)
T d2aa4a1 1 MTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPEALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHNL 80 (119)
T ss_dssp CCEEEEEECSSEEEEEEECTTCCEEEEEEEECCSSCCHHHHHHHHHHHHTTTGGGCSEEEEEESSEEETTEEECSSGGGG
T ss_pred CEEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEECCCCC
T ss_conf 90999996868799999949998987677703666768899999999999753347638998432673998689726754
Q ss_pred ---HHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf ---999999999840489977998367
Q gi|254780976|r 89 ---STRAFVHNMIDRKVYVPFVFWDER 112 (160)
Q Consensus 89 ---~v~~f~~~L~~~~~~l~v~~~DEr 112 (160)
.-.++.+.| ++.+++||++.+.-
T Consensus 81 ~~w~~~~l~~~l-~~~~~~pv~i~NDa 106 (119)
T d2aa4a1 81 GGLLHFPLVKTL-EQLTNLPTIAINDA 106 (119)
T ss_dssp GGGTTCCHHHHH-HHHHCSCEEEEEHH
T ss_pred CCCCCCCHHHHH-HHHHCCCEEEEEHH
T ss_conf 435699789999-99869999998458
No 9
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}
Probab=94.73 E-value=0.091 Score=28.57 Aligned_cols=93 Identities=13% Similarity=0.184 Sum_probs=55.6
Q ss_pred EEEEECCCCEEEEEEEECCCCEECCCEEE-ECCCCCHHHHHHHHHHHHH-----CCCEEEEEECCCCCCCCCHHH-----
Q ss_conf 99998688768999630765110121011-0477415689899998651-----677589972135788888447-----
Q gi|254780976|r 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-----NIAAFIIGLPLNMNGSEGPRV----- 87 (160)
Q Consensus 19 iLgiD~G~kriGiAisd~~~~~a~Pl~~i-~~~~~~~~~~~l~~ii~e~-----~i~~iVvGlP~~~~g~~~~~~----- 87 (160)
+||||.|..+|=+|+.|..+.+-.-..+- +.......+..+.+++++. .+..+-||.|=..|...+...
T Consensus 2 yiGiDiGgT~i~~~l~d~~g~i~~~~~~~t~~~~~~~~~~~i~~~i~~~~~~~~~~~~igi~~pG~vd~~~g~i~~~~~~ 81 (117)
T d2ap1a2 2 YYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHTSYSAFLDAVCELVEEADQRFGVKGSVGIGIPGMPETEDGTLYAANVP 81 (117)
T ss_dssp EEEEEECSSEEEEEEEETTCCEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHTSCCEEEEEESSBSCCTTSCCBCTTCT
T ss_pred EEEEEECCCEEEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECCCCC
T ss_conf 99999780109999996999999998774024578999999999999988626741269872377543456666046765
Q ss_pred H-HHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 9-999999999840489977998367
Q gi|254780976|r 88 H-STRAFVHNMIDRKVYVPFVFWDER 112 (160)
Q Consensus 88 ~-~v~~f~~~L~~~~~~l~v~~~DEr 112 (160)
. .-..+.+.| ++.+++||++-+.-
T Consensus 82 ~w~~~~l~~~l-~~~~~~pv~l~NDa 106 (117)
T d2ap1a2 82 AASGKPLRADL-SARLDRDVRLDNDA 106 (117)
T ss_dssp TTTTSCHHHHH-HHHHTSCEEEEEHH
T ss_pred CCCCCCHHHHH-HHHHCCCEEEEEHH
T ss_conf 55797589999-88769989997478
No 10
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}
Probab=94.46 E-value=0.046 Score=30.34 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=46.6
Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCC
Q ss_conf 839999868876899963076511012101104774156898999986516--77589972135788888
Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN--IAAFIIGLPLNMNGSEG 84 (160)
Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~--i~~iVvGlP~~~~g~~~ 84 (160)
+.+|++|.|-.++=+|+.|..+....-....+..........+..++++++ +..+.+|.|-..++...
T Consensus 2 ~~~L~~DIGGTn~r~alv~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ag~~~~~~~ 71 (110)
T d1q18a1 2 KYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGCIAIACPITGDWV 71 (110)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCSEEEEEESSCCCSSEE
T ss_pred CEEEEEEECCHHEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEE
T ss_conf 4899999880059999998699808888851354324599999998763366655699822434257377
No 11
>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]}
Probab=94.28 E-value=0.092 Score=28.55 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=48.4
Q ss_pred CEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHC--CCEEEEEECCCCC
Q ss_conf 39999868876899963076511012101104774156898999986516--7758997213578
Q gi|254780976|r 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN--IAAFIIGLPLNMN 80 (160)
Q Consensus 18 riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~--i~~iVvGlP~~~~ 80 (160)
-.|++|.|-.+|-.|+.|+....-....+.+..+.......+.++++++. +..+-||.|=..|
T Consensus 2 y~L~~DIGGT~ir~glvd~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~igI~~pG~vd 66 (319)
T d1sz2a1 2 YALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGCIAIACPIT 66 (319)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHSCCCCCEEEEEESSCCC
T ss_pred EEEEEEECHHHEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 79999988111443799999998978887689987579999999998638876669998225877
No 12
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}
Probab=93.77 E-value=0.063 Score=29.54 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=60.4
Q ss_pred CCCEEEEECCCCEEEEEEEECCCCEEC-CCEEEECCCCCHHHHHH----HHHHHH-----HCCCEEEEEECCCCCCCCC-
Q ss_conf 983999986887689996307651101-21011047741568989----999865-----1677589972135788888-
Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRFAH-PRPFLVRKKVTQTALEL----LSFITT-----ENIAAFIIGLPLNMNGSEG- 84 (160)
Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~a~-Pl~~i~~~~~~~~~~~l----~~ii~e-----~~i~~iVvGlP~~~~g~~~- 84 (160)
..++||+|+|..++-+++.|-.+.+-. ....++..+....+..+ ..++.+ .++.++-|+.|=..+...+
T Consensus 3 ~~~~l~i~i~~~~i~~~l~Dl~G~~l~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~i~gIgi~~pG~v~~~~~~ 82 (129)
T d1z6ra2 3 AWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGI 82 (129)
T ss_dssp TCEEEEEEEETTEEEEEEEETTCCEEEEEEEECCSSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEESSEEETTTTE
T ss_pred CEEEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEECCCC
T ss_conf 35999999899999999995999988787740245544689999999999999853754333036887331126640460
Q ss_pred ----HHHH--HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
Q ss_conf ----4479--9999999998404899779983671679999999
Q gi|254780976|r 85 ----PRVH--STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122 (160)
Q Consensus 85 ----~~~~--~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~l 122 (160)
+... .-..+.+.| ++.+++||.+.+.--+..-|+..+
T Consensus 83 ~~~~~~~~~w~~~~l~~~l-~~~~~~pV~~~NDa~a~alaE~~~ 125 (129)
T d1z6ra2 83 VHRMPFYEDVKEMPLGEAL-EQHTGVPVYIQHDISAWTMAEALF 125 (129)
T ss_dssp EEECTTCTTCSSBCHHHHH-HHHHSSCEEEEEHHHHHHHHHHHH
T ss_pred EECCCCCHHCCCCCHHHHH-HHHCCCCEEEEEHHHHHHHHHHHH
T ss_conf 3046761110583369999-986199899986488999999734
No 13
>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}
Probab=93.75 E-value=0.049 Score=30.22 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=57.1
Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEE-ECCCCCHHHHHHH----HHHHHHC-----CCEEEEEECCCCCCCCC--
Q ss_conf 8399998688768999630765110121011-0477415689899----9986516-----77589972135788888--
Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL----SFITTEN-----IAAFIIGLPLNMNGSEG-- 84 (160)
Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i-~~~~~~~~~~~l~----~ii~e~~-----i~~iVvGlP~~~~g~~~-- 84 (160)
-.+||+|.|..++-+|+.|..+.+-.-...- +..+....+..+. +++.+.+ +.++-||.|=..+...+
T Consensus 4 ~~~lgi~ig~~~i~~~l~d~~G~il~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gIgi~~pG~vd~~~~~~ 83 (128)
T d1z05a3 4 WQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHEIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSEQGIV 83 (128)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEEEECCCCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEESSEEETTTTEE
T ss_pred CEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCEEE
T ss_conf 89999998999999999959899999997213468989999999999999999743244661578762100140221042
Q ss_pred ---HHH-HHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH
Q ss_conf ---447-9999999999840489977998367167999999
Q gi|254780976|r 85 ---PRV-HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121 (160)
Q Consensus 85 ---~~~-~~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~ 121 (160)
+.. -.-.++.+.| ++.+++||++.+.--...-|+..
T Consensus 84 ~~~~~~~~~~~~l~~~l-~~~~~~PV~l~NDana~a~aE~~ 123 (128)
T d1z05a3 84 LQMPHYNVKNLALGPEI-YKATGLPVFVANDTRAWALAEKL 123 (128)
T ss_dssp EECSSSBCSSBCHHHHH-HHHHCSCEEEEEHHHHHHHHHHH
T ss_pred ECCCCCCCCCCCHHHHH-HHHCCCCEEEEEHHHHHHHHHHH
T ss_conf 01125787886368999-98519989998668899999986
No 14
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}
Probab=93.38 E-value=0.24 Score=25.98 Aligned_cols=92 Identities=21% Similarity=0.206 Sum_probs=64.7
Q ss_pred CEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHH-----HCCCEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 399998688768999630765110121011047741568989999865-----167758997213578888844799999
Q gi|254780976|r 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT-----ENIAAFIIGLPLNMNGSEGPRVHSTRA 92 (160)
Q Consensus 18 riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e-----~~i~~iVvGlP~~~~g~~~~~~~~v~~ 92 (160)
|||+||--.+.+++|+.+....++. .....+.+.+.....+.+++++ .+++.|+|+.= -|+.+ -.+....
T Consensus 1 kiLaIdTS~~~~sval~~~~~i~~~-~~~~~~~h~~~l~~~i~~~l~~~~~~~~di~~i~v~~G---PGsfT-glRig~s 75 (106)
T d1okja1 1 RILAIDTATEACSVALWNDGTVNAH-FELCPREHTQRILPMVQDILTTSGTSLTDINALAYGRG---PGSFT-GVRIGIG 75 (106)
T ss_dssp EEEEEECSSSEEEEEEEETTEEEEE-EEECCSSTTTTHHHHHHHHHHHTTCCGGGCCEEEEEEE---SSCHH-HHHHHHH
T ss_pred CEEEEECCCCCEEEEEEECCEEEEE-EEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEC---CCCCC-CCHHHHH
T ss_conf 9999997771329999999999999-99755899999999999999860875002567888503---67654-2059999
Q ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHH
Q ss_conf 999998404899779983671679999
Q gi|254780976|r 93 FVHNMIDRKVYVPFVFWDERLTTVSAQ 119 (160)
Q Consensus 93 f~~~L~~~~~~l~v~~~DEr~TS~~A~ 119 (160)
|++-|. ...++|++-+ +|.++.
T Consensus 76 ~akgla-~~~~ip~~~v----~sl~~l 97 (106)
T d1okja1 76 IAQGLA-LGAELPMIGV----STLMTM 97 (106)
T ss_dssp HHHHHH-HHTTCCEEEE----EHHHHH
T ss_pred HHHHHH-HHCCCCEEEE----CHHHHH
T ss_conf 999999-9829999986----879999
No 15
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Probab=91.31 E-value=0.061 Score=29.64 Aligned_cols=21 Identities=43% Similarity=0.477 Sum_probs=18.5
Q ss_pred CEEEEECCCCEEEEEEEECCC
Q ss_conf 399998688768999630765
Q gi|254780976|r 18 PIASIDLGTKRIGLAISDPGR 38 (160)
Q Consensus 18 riLgiD~G~kriGiAisd~~~ 38 (160)
||+|||||+.++.+|+.+...
T Consensus 1 ~VvGIDfGTt~s~va~~~~~~ 21 (183)
T d1dkgd1 1 KIIGIDLGTTNSCVAIMDGTT 21 (183)
T ss_dssp CCCEEECCSSEEEEEEEETTE
T ss_pred CEEEEECCHHCEEEEEEECCE
T ss_conf 999998582028999999999
No 16
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
Probab=91.00 E-value=0.084 Score=28.79 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.5
Q ss_pred CCEEEEECCCCEEEEEEEECCC
Q ss_conf 8399998688768999630765
Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGR 38 (160)
Q Consensus 17 ~riLgiD~G~kriGiAisd~~~ 38 (160)
+.++|||||+.++.+|+.++..
T Consensus 1 g~vvGIDfGTt~s~va~~~~g~ 22 (185)
T d1bupa1 1 GPAVGIDLGSTYSCVGVFQHGK 22 (185)
T ss_dssp CCCEEEEECSSEEEEEEEETTE
T ss_pred CCEEEEECCHHCEEEEEEECCE
T ss_conf 9999998682308999998999
No 17
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}
Probab=90.80 E-value=0.5 Score=24.11 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=35.1
Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 839999868876899963076511012101104774156898999986516
Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67 (160)
Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~ 67 (160)
+.+||||.|...|=+|+-|..+.+-.-...-...+..+..+.+.+++++..
T Consensus 2 M~~lGIDiGGT~~k~~vvd~~g~il~~~~~~t~~~~~~~~~~i~~~l~~~~ 52 (259)
T d1huxa_ 2 IYTLGIDVGSTASKCIILKDGKEIVAKSLVAVGTGTSGPARSISEVLENAH 52 (259)
T ss_dssp CEEEEEEECSSEEEEEEEETTTEEEEEEEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 589999917212999999089909999995689997999999999999725
No 18
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=90.40 E-value=0.43 Score=24.50 Aligned_cols=104 Identities=11% Similarity=0.121 Sum_probs=56.6
Q ss_pred CCCEEEEECCCCEEEEEEEECCCCEECCCEE-EEC-CCCCHHHHHHHHHHH---------HHCCCEEEEEECCCCCCCCC
Q ss_conf 9839999868876899963076511012101-104-774156898999986---------51677589972135788888
Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF-LVR-KKVTQTALELLSFIT---------TENIAAFIIGLPLNMNGSEG 84 (160)
Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~a~Pl~~-i~~-~~~~~~~~~l~~ii~---------e~~i~~iVvGlP~~~~g~~~ 84 (160)
..-++|+|+|..++-+++.|..+.+-.-... +.. ......+..+.++++ ...+.++-||.|=..|...+
T Consensus 3 ~~~~igidig~~~i~~~l~d~~G~il~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~~g 82 (128)
T d2hoea3 3 CAYVLGIEVTRDEIAACLIDASMNILAHEAHPLPSQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAAPGPIDTERG 82 (128)
T ss_dssp GCEEEEEEECSSEEEEEEEETTCCEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEESSCEETTTT
T ss_pred CEEEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCC
T ss_conf 57999999999999999995999899999885145789899999999999999997142468557985140511848889
Q ss_pred -----HHHH-HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHH
Q ss_conf -----4479-99999999984048997799836716799999
Q gi|254780976|r 85 -----PRVH-STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120 (160)
Q Consensus 85 -----~~~~-~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~ 120 (160)
+... .-.++.+.|. +.+++||.+.++--...-|+.
T Consensus 83 ~i~~~~~l~w~~~~l~~~l~-~~~~~pv~i~NDa~~~alaE~ 123 (128)
T d2hoea3 83 IIIDPRNFPLSQIPLANLLK-EKYGIEVWVENDADMGAVGEK 123 (128)
T ss_dssp EECCCSSCTTBTSCHHHHHH-HHHCSEEEEEEHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHH-HHCCCCEEEEEHHHHHHHHHH
T ss_conf 89851222224886699999-872998999848889999999
No 19
>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}
Probab=90.14 E-value=0.25 Score=25.92 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=52.7
Q ss_pred CCCEEEEECCCCEEEEEEEECC-CCEECCCEEEE--CCC-CCHHHHHHHHHHHH----H----CCCEEEEEECCCCCCC-
Q ss_conf 9839999868876899963076-51101210110--477-41568989999865----1----6775899721357888-
Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPG-RRFAHPRPFLV--RKK-VTQTALELLSFITT----E----NIAAFIIGLPLNMNGS- 82 (160)
Q Consensus 16 ~~riLgiD~G~kriGiAisd~~-~~~a~Pl~~i~--~~~-~~~~~~~l~~ii~e----~----~i~~iVvGlP~~~~g~- 82 (160)
+..+||||+|-.+|=+|+.|.. +.+..-...++ ... .......+..++++ + .+.++-||.|-..+..
T Consensus 1 ~~~vlGiDiGgT~i~~~l~d~~~g~i~~~~~~~~t~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~gIGi~~pG~vd~~~ 80 (129)
T d1woqa1 1 NAPLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPATPESVAEAVALVVAELSARPEAPAAGSPVGVTFPGIIQHGV 80 (129)
T ss_dssp CCCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHTSTTCCCTTCCEEEEESSCEETTE
T ss_pred CCCEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEECCE
T ss_conf 99889999883669999998999989999860142467789999999999999987401435531046303210486470
Q ss_pred ----CCHHHH-HHHHHHHHHHHHCCCCCEEEECCCCCHHHH
Q ss_conf ----884479-999999999840489977998367167999
Q gi|254780976|r 83 ----EGPRVH-STRAFVHNMIDRKVYVPFVFWDERLTTVSA 118 (160)
Q Consensus 83 ----~~~~~~-~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A 118 (160)
.+.... .=..+.+.| ++.+++||++-+.--...-|
T Consensus 81 ~~~~~~~~~~w~~~~l~~~l-~~~~~~pv~i~NDan~aalg 120 (129)
T d1woqa1 81 VHSAANVDKSWLNTDIDALL-TARLGRPVEVINDADAAGLA 120 (129)
T ss_dssp ECCCTTSCGGGTTCBHHHHH-HHHHTSCEEEEEHHHHHHHH
T ss_pred EEEECCCCCCCCCCCCHHHH-HHHCCCCEEEEEHHHHHHHH
T ss_conf 89813447874103615668-98629958998769999999
No 20
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}
Probab=87.88 E-value=0.61 Score=23.59 Aligned_cols=51 Identities=8% Similarity=0.051 Sum_probs=31.8
Q ss_pred CCCCCEEEEECCCCEEEEEEEECCCCEE-C--CCEEEECCCCCHHHHHHHHHHH
Q ss_conf 8998399998688768999630765110-1--2101104774156898999986
Q gi|254780976|r 14 KPNQPIASIDLGTKRIGLAISDPGRRFA-H--PRPFLVRKKVTQTALELLSFIT 64 (160)
Q Consensus 14 ~~~~riLgiD~G~kriGiAisd~~~~~a-~--Pl~~i~~~~~~~~~~~l~~ii~ 64 (160)
|.|+-+||||.|..++=.++.|..+.+- . .-+.-.....++.+..+...++
T Consensus 1 psm~y~lGID~GGT~tk~~l~d~~G~il~~~~~~~~~~~~~~~~~~~~i~~~i~ 54 (114)
T d1zc6a1 1 PSIRYLIGVDGGGTGTRIRLHASDGTPLAMAEGGASALSQGIAKSWQAVLSTLE 54 (114)
T ss_dssp CCCCEEEEEEECSSCEEEEEEETTCCEEEEEEESCCCGGGCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 986689999847010899999499989999972688733499999999999999
No 21
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}
Probab=79.39 E-value=0.62 Score=23.52 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=20.1
Q ss_pred CEEEEECCCCEEEEEEEECCCCEECC
Q ss_conf 39999868876899963076511012
Q gi|254780976|r 18 PIASIDLGTKRIGLAISDPGRRFAHP 43 (160)
Q Consensus 18 riLgiD~G~kriGiAisd~~~~~a~P 43 (160)
|.+|||+|+.+.-+|+.+....+-.|
T Consensus 1 ~~iGIDlGTtns~va~~~~~~v~~~~ 26 (137)
T d1jcea1 1 KDIGIDLGTANTLVFLRGKGIVVNEP 26 (137)
T ss_dssp CEEEEEECSSEEEEEETTTEEEEEEE
T ss_pred CEEEEECCHHHEEEEEECCCEEEECC
T ss_conf 93899757562999996899896449
No 22
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}
Probab=68.57 E-value=3.6 Score=18.92 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=39.7
Q ss_pred EEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 9998688768999630765110121011047741568989999865167758997213
Q gi|254780976|r 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 (160)
Q Consensus 20 LgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~ 77 (160)
+|||+|-.+|=+|+-|..+.+-. .. .......+.+.+++..+..+-++-|-
T Consensus 3 iGIDiGGT~ik~~lvd~~g~i~~---~~----~~~t~~~i~~~i~~~~~~~i~i~g~g 53 (267)
T d2ewsa1 3 VGIDAGGTLIKIVQEQDNQRTFK---TE----LTKNIDQVVEWLNQQQIEKLCLTGGN 53 (267)
T ss_dssp EEEEECSSEEEEEEECSSCEEEE---EE----EGGGHHHHHHHHHTSCCSEEEEESTT
T ss_pred EEEEECHHHEEEEEEECCCCEEE---EE----ECCCHHHHHHHHHHHHHHHEEEECCC
T ss_conf 99997720388899928996899---98----63548999999997532234662344
No 23
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli [TaxId: 562]}
Probab=57.92 E-value=5.4 Score=17.85 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=20.1
Q ss_pred CCCEEEEECCCCEEEEEEEECCCCE
Q ss_conf 9839999868876899963076511
Q gi|254780976|r 16 NQPIASIDLGTKRIGLAISDPGRRF 40 (160)
Q Consensus 16 ~~riLgiD~G~kriGiAisd~~~~~ 40 (160)
++-+||||+|+..+=+++-|..+..
T Consensus 2 kky~lgiDiGTssvKa~l~d~~g~~ 26 (252)
T d2p3ra1 2 KKYIVALDQGTTSSRAVVMDHDANI 26 (252)
T ss_dssp CCEEEEEEECSSEEEEEEECTTCCE
T ss_pred CEEEEEEEECCCCEEEEEEECCCCE
T ss_conf 7499999820234565589298989
No 24
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=57.00 E-value=5.8 Score=17.66 Aligned_cols=63 Identities=5% Similarity=-0.064 Sum_probs=39.8
Q ss_pred HHHHHCCCCCCEEEEEC--------CCCEEEEEEEECCCCEE--CCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99983589983999986--------88768999630765110--121011047741568989999865167758997213
Q gi|254780976|r 8 DLVKSLKPNQPIASIDL--------GTKRIGLAISDPGRRFA--HPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 (160)
Q Consensus 8 ~~~~~~~~~~riLgiD~--------G~kriGiAisd~~~~~a--~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~ 77 (160)
=|...++|..+||++|. |.+- + ..+... .+++ +..++..-++.++.++++++.|..||+|.-.
T Consensus 101 v~~all~pGD~im~l~l~~GGHlshg~~~-----~-~~g~~~~~~~y~-~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~ 173 (405)
T d1kl1a_ 101 VYFTVLEHGDTVLGMNLSHGGHLTHGSPV-----N-FSGVQYNFVAYG-VDPETHVIDYDDVREKARLHRPKLIVAAASA 173 (405)
T ss_dssp HHHHHCCTTCEEEEECGGGTCCGGGTCTT-----S-HHHHHSEEEEEC-BCTTTCSBCHHHHHHHHHHHCCSEEEECCSS
T ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCC-----C-CCCEEEEEEEEC-CCHHCCCCCHHHHHHHHHHHCCCEEEECCCC
T ss_conf 99984489987887303556644567622-----3-364588877732-3130253139999999986276537752314
No 25
>d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}
Probab=55.55 E-value=6.2 Score=17.48 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=51.3
Q ss_pred CCCCEEEEECCCCEEEEEEEECCCCEECCCEEEEC-----------CC--------CCHHHHHHHHHHHHHCCCEE-EEE
Q ss_conf 99839999868876899963076511012101104-----------77--------41568989999865167758-997
Q gi|254780976|r 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-----------KK--------VTQTALELLSFITTENIAAF-IIG 74 (160)
Q Consensus 15 ~~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~-----------~~--------~~~~~~~l~~ii~e~~i~~i-VvG 74 (160)
|+.|+-.||.|+--+=+.|.|.......++..... .. .-+.+..+.+++++|+++.+ ++|
T Consensus 1 ~mmriavIDIGSNsirl~I~~~~~~~~~~l~~~~~~~~Lg~~~~~~g~ls~~~i~~~~~~l~~f~~~~~~~~v~~~~~va 80 (126)
T d1t6ca1 1 PIMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVA 80 (126)
T ss_dssp CCEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCCEEEEEEECCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEH
T ss_conf 98789999974441999999864996226644337887246754458788899999999999999998743865167743
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 213578888844799999999998404899779983
Q gi|254780976|r 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWD 110 (160)
Q Consensus 75 lP~~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~D 110 (160)
-- - -..+.-...|.+.+ .+.+++++...+
T Consensus 81 Ts-A-----~R~A~N~~~~~~~i-~~~tgi~i~Iis 109 (126)
T d1t6ca1 81 TE-A-----IRRAKNAEEFLERV-KREVGLVVEVIT 109 (126)
T ss_dssp CH-H-----HHTSTTHHHHHHHH-HHHTCCCEEECC
T ss_pred HH-H-----HHHCCCHHHHHHHH-HHHHCCCEEEEC
T ss_conf 19-9-----88085999999999-998799969907
No 26
>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}
Probab=53.35 E-value=6.7 Score=17.26 Aligned_cols=83 Identities=11% Similarity=0.193 Sum_probs=53.8
Q ss_pred EECCCEEEECCCC------CHHHHH---HHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE-
Q ss_conf 1012101104774------156898---999986516775899721357888884479999999999840489977998-
Q gi|254780976|r 40 FAHPRPFLVRKKV------TQTALE---LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW- 109 (160)
Q Consensus 40 ~a~Pl~~i~~~~~------~~~~~~---l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~- 109 (160)
+..|+-++.|-.. ...+.. -...+++.++++||+|. ++.||+-... .++ +|....-++|++|+
T Consensus 49 ~~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~G~dGvV~G~-L~~dg~iD~~--~~~----~L~~~a~~l~vTFHR 121 (247)
T d1twda_ 49 VTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGV-LDVDGNVDMP--RME----KIMAAAGPLAVTFHR 121 (247)
T ss_dssp CCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECC-BCTTSSBCHH--HHH----HHHHHHTTSEEEECG
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCHH--HHH----HHHHHHCCCCEEEEH
T ss_conf 499727997048998878989999999999999985998689978-8898881499--999----999996336725300
Q ss_pred --CCCCCHHHHHHHHHHCCCCH
Q ss_conf --36716799999999869864
Q gi|254780976|r 110 --DERLTTVSAQQILIDMNVSR 129 (160)
Q Consensus 110 --DEr~TS~~A~~~l~~~g~~~ 129 (160)
|+----.+|-+.|.+.|..+
T Consensus 122 AfD~~~d~~~al~~Li~lG~~r 143 (247)
T d1twda_ 122 AFDMCANPLYTLNNLAELGIAR 143 (247)
T ss_dssp GGGGCSCHHHHHHHHHHHTCCE
T ss_pred HHHHHCCHHHHHHHHHHCCCCE
T ss_conf 2465289999999997669786
No 27
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=47.31 E-value=8.4 Score=16.68 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=38.1
Q ss_pred CCEEEEECCCCEEEEEEEECCCC---EECCCEEEEC-----------CCC-----C-HHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 83999986887689996307651---1012101104-----------774-----1-56898999986516775899721
Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRR---FAHPRPFLVR-----------KKV-----T-QTALELLSFITTENIAAFIIGLP 76 (160)
Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~---~a~Pl~~i~~-----------~~~-----~-~~~~~l~~ii~e~~i~~iVvGlP 76 (160)
.|||+||+|.|+.+.|+-+.... .-....++.- ... . .....+..+...+.++.++|---
T Consensus 2 ~kIlSIDvGIkNlAyc~l~~~~~~~~~I~~W~~i~L~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~d~vlIE~Q 81 (218)
T d1kcfa2 2 SRVLGIDLGIKNFSYCFASQNEDSKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILMERQ 81 (218)
T ss_dssp SSEEEEEECSTTEEEEEEEECTTSCEEEEEEEEECTTSCCTTCCCCCCCCSHHHHHHHHHHHHHHHHHHHCCSEEEEEEC
T ss_pred CEEEEEEECCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 76999982754027999866799984787703674036556765323227989999999999865420157856898521
Q ss_pred CCCCCCC
Q ss_conf 3578888
Q gi|254780976|r 77 LNMNGSE 83 (160)
Q Consensus 77 ~~~~g~~ 83 (160)
....|..
T Consensus 82 ~~r~~~~ 88 (218)
T d1kcfa2 82 RYRSGIA 88 (218)
T ss_dssp CCCTTTC
T ss_pred CCCCCCC
T ss_conf 3446763
No 28
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=44.06 E-value=7.6 Score=16.96 Aligned_cols=68 Identities=16% Similarity=0.065 Sum_probs=39.5
Q ss_pred HHHHHHCCCCCCEEEEECCC--C-EEE-------EEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 99998358998399998688--7-689-------9963076511012101104774156898999986516775899721
Q gi|254780976|r 7 EDLVKSLKPNQPIASIDLGT--K-RIG-------LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 (160)
Q Consensus 7 ~~~~~~~~~~~riLgiD~G~--k-riG-------iAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP 76 (160)
.=|...++|..+||+++.-. . --| +.++ ...--..|+.+ ..++..-+..++.+++++++|..||+|..
T Consensus 108 av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~-g~~~~~~~Y~~-d~~~~~IDyd~~~~~a~~~kPklIi~G~S 185 (463)
T d2a7va1 108 AVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISAT-SIFFESMPYKL-NPKTGLIDYNQLALTARLFRPRLIIAGTS 185 (463)
T ss_dssp HHHHHHCCSCEECCC--------------------------------CCB-CTTTCSBCHHHHHHHHHHHCCSEEEECCS
T ss_pred HHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCE-EEEEEEEEEEC-CCCCCCCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 99999708775587405676765446654555555402-45766545401-58888474999999975047765772330
No 29
>d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]}
Probab=42.09 E-value=10 Score=16.19 Aligned_cols=115 Identities=14% Similarity=0.002 Sum_probs=67.2
Q ss_pred CCCCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 99839999868876899963076511012101104774156898999986516775899721357888884479999999
Q gi|254780976|r 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFV 94 (160)
Q Consensus 15 ~~~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~ 94 (160)
.+--+++|....++.|+|+.|-.+.--. +. . ......+...+...+|..||+- -+. ....
T Consensus 13 ~nnyL~ai~~~~~~~gla~~DiSTG~f~----~~--~-~~~~~~l~~~l~r~~P~Eil~~--~~~---~~~~-------- 72 (153)
T d1wb9a3 13 QDNLLAAIWQDSKGFGYATLDISSGRFR----LS--E-PADRETMAAELQRTNPAELLYA--EDF---AEMS-------- 72 (153)
T ss_dssp SCCCEEEEEECSSCEEEEEECTTTCCEE----EE--C-CCSHHHHHHHHHHHCCSEEEEE--TTC---CCGG--------
T ss_pred CCCEEEEEEECCCEEEEEEEECCCCEEE----EE--E-CCCHHHHHHHHHHCCCCCCCCC--CCC---HHHH--------
T ss_conf 8628999997798478999971455799----99--7-1788889999982098650114--542---1256--------
Q ss_pred HHHHHHCCCCCE-EEECCCCCHHHHHHHHHHC-CCCHHHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999840489977-9983671679999999986-9864454---643789989999999996864
Q gi|254780976|r 95 HNMIDRKVYVPF-VFWDERLTTVSAQQILIDM-NVSRKKR---IQKVDSIAAALILQEVLDRIS 153 (160)
Q Consensus 95 ~~L~~~~~~l~v-~~~DEr~TS~~A~~~l~~~-g~~~k~~---k~~iD~~AA~iILq~~Ld~~~ 153 (160)
+.. ....+ ..-++.+....|++.+.+. +++.-.. ......+.|+--|-.||.+..
T Consensus 73 --~~~--~~~~~~~~~~~~f~~~~~~~~l~~~f~~~~l~~~g~~~~~~~~~A~gaLL~Yl~~tq 132 (153)
T d1wb9a3 73 --LIE--GRRGLRRRPLWEFEIDTARQQLNLQFGTRDLVGFGVENAPRGLCAAGCLLQYAKDTQ 132 (153)
T ss_dssp --GTT--TCSSEEEECGGGGCHHHHHHHHHHHHTCSCSGGGTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred --HHH--HCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf --775--335553166521351779999998718776543211136579999999999999980
No 30
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=37.95 E-value=12 Score=15.80 Aligned_cols=90 Identities=12% Similarity=0.187 Sum_probs=57.1
Q ss_pred CCEEEEECCCCEEEEEEEECCCCEECCCEEEECCCCCHHHHHHHHHHHHH-----CCCEEEEEECCCCCCCCCH-HHHHH
Q ss_conf 83999986887689996307651101210110477415689899998651-----6775899721357888884-47999
Q gi|254780976|r 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-----NIAAFIIGLPLNMNGSEGP-RVHST 90 (160)
Q Consensus 17 ~riLgiD~G~kriGiAisd~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e~-----~i~~iVvGlP~~~~g~~~~-~~~~v 90 (160)
+.+|+||-- .++.+|+.+....+..-. .-.+++.+.....+.++.++. +++.|+++. |--+- -.+..
T Consensus 1 M~iLaidTS-~~~sval~~~~~~~~~~~-~~~~~hs~~l~~~i~~~l~~~~~~~~di~~i~v~~-----GPGsfTglRig 73 (103)
T d2a6aa1 1 MNVLALDTS-QRIRIGLRKGEDLFEISY-TGEKKHAEILPVVVKKLLDELDLKVKDLDVVGVGI-----GPGGLTGLRVG 73 (103)
T ss_dssp CEEEEEECS-SSEEEEEEETTEEEEEEE-ESCGGGGGHHHHHHHHHHHHHTCCGGGCSEEEEEC-----CSSCHHHHHHH
T ss_pred CCEEEEECC-CCCEEEEEECCEEEEEEC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC-----CCCCCHHHHHH
T ss_conf 959999937-653799998999999961-67668999999999999998399989967776247-----88763208999
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCHHHH
Q ss_conf 9999999840489977998367167999
Q gi|254780976|r 91 RAFVHNMIDRKVYVPFVFWDERLTTVSA 118 (160)
Q Consensus 91 ~~f~~~L~~~~~~l~v~~~DEr~TS~~A 118 (160)
..|++-|. ...++|++-+ +|.+|
T Consensus 74 ~s~akgla-~~~~ip~~gi----s~l~~ 96 (103)
T d2a6aa1 74 IATVVGLV-SPYDIPVAPL----NSFEM 96 (103)
T ss_dssp HHHHHHHH-GGGTCCEEEE----CHHHH
T ss_pred HHHHHHHH-HHCCCCEEEE----CHHHH
T ss_conf 99999999-9809999974----87999
No 31
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=34.57 E-value=11 Score=15.87 Aligned_cols=68 Identities=13% Similarity=0.005 Sum_probs=39.1
Q ss_pred HHHHHCCCCCCEEEEECCC--C-EEEEEEEE--CCCCEECCCEEE----ECCCCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 9998358998399998688--7-68999630--765110121011----04774156898999986516775899721
Q gi|254780976|r 8 DLVKSLKPNQPIASIDLGT--K-RIGLAISD--PGRRFAHPRPFL----VRKKVTQTALELLSFITTENIAAFIIGLP 76 (160)
Q Consensus 8 ~~~~~~~~~~riLgiD~G~--k-riGiAisd--~~~~~a~Pl~~i----~~~~~~~~~~~l~~ii~e~~i~~iVvGlP 76 (160)
=|...+.+..+||+++.-. . --|. .+. ...........+ ..++..-+..++.+++++++|..||+|..
T Consensus 113 v~~all~pgD~im~~~l~~GGHlshg~-~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S 189 (470)
T d1rv3a_ 113 VYTALVEPHGRIMGLDLPDGGHLTHGF-MTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTS 189 (470)
T ss_dssp HHHHHTCTTCEEEEECGGGTCCGGGCC-BCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCS
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECHH
T ss_conf 999752899868630445577645554-35677754245146765777750467644999999987407654760355
No 32
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}
Probab=34.32 E-value=8.4 Score=16.68 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=38.9
Q ss_pred HHHHHCCCCCCEEEEECCCCE---EEEEEEECCCC--EECCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 999835899839999868876---89996307651--1012101104774156898999986516775899721
Q gi|254780976|r 8 DLVKSLKPNQPIASIDLGTKR---IGLAISDPGRR--FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 (160)
Q Consensus 8 ~~~~~~~~~~riLgiD~G~kr---iGiAisd~~~~--~a~Pl~~i~~~~~~~~~~~l~~ii~e~~i~~iVvGlP 76 (160)
=|...++|..+||++|.-.-- -|-. ....+. -..|+++ ..+..-+.+++.+++++++|..||+|.-
T Consensus 104 v~~All~pGD~Il~l~l~~GGHlshg~~-~~~~g~~~~~~~y~~--d~~~~IDyd~l~~~a~~~kPklIi~G~S 174 (416)
T d1dfoa_ 104 VYTALLEPGDTVLGMNLAHGGHLTHGSP-VNFSGKLYNIVPYGI--DATGHIDYADLEKQAKEHKPKMIIGGFS 174 (416)
T ss_dssp HHHHHCCTTCEEEEECTTTTCCGGGTCT-TSHHHHHSEEEEECB--CSSSSBCHHHHHHHHHHHCCSEEEEECS
T ss_pred HHHHHCCCCCEEEECCCCCCCCCCCCCC-CCCCCCEEEEEECCC--CCCCCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf 9998638988664214654333355555-444672379996466--8766744789999999836564873432
No 33
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}
Probab=33.41 E-value=6.9 Score=17.19 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=17.8
Q ss_pred EEEEECCCCEEEEEEEECCCC
Q ss_conf 999986887689996307651
Q gi|254780976|r 19 IASIDLGTKRIGLAISDPGRR 39 (160)
Q Consensus 19 iLgiD~G~kriGiAisd~~~~ 39 (160)
+||||+|+..+=+++-|..+.
T Consensus 3 vlgiDiGTtsvKa~l~D~~g~ 23 (252)
T d1r59o1 3 VMAIDQGTTSSRAIIFDRNGK 23 (252)
T ss_dssp EEEEBCCSSBCBCCEECSSSC
T ss_pred EEEEEECCCCEEEEEEECCCC
T ss_conf 999984223435358948798
No 34
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.21 E-value=16 Score=15.03 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHH
Q ss_conf 56898999986516775899721357888884479999999999840489977998367167999999998698644
Q gi|254780976|r 54 QTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 (160)
Q Consensus 54 ~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k 130 (160)
+....+.-+..+.++..|.|.. =|..+......+-+++.+.+..+++||..-=+---..+++++|.+.|++.-
T Consensus 59 ~v~~al~lil~d~~vk~IlINi----fGGI~rcd~vA~GIv~A~k~~~~~iPiVVRl~Gtn~eeg~~iL~~~gl~i~ 131 (150)
T d2nu7b1 59 RVTEAFKIILSDDKVKAVLVNI----FGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNII 131 (150)
T ss_dssp HHHHHHHHHHTSTTCCEEEEEE----ESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHHHHHHHCSSEE
T ss_pred HHHHHHHHHHCCCCCCEEEEEE----EEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEE
T ss_conf 9999999997599877899987----651000688999999999855999729999447998999999997899849
No 35
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=29.58 E-value=16 Score=14.96 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCHH
Q ss_conf 56898999986516775899721357888884479999999999840489977998367167999999998698644
Q gi|254780976|r 54 QTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130 (160)
Q Consensus 54 ~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~DEr~TS~~A~~~l~~~g~~~k 130 (160)
+....+.-+..+.++..+.|.. =|..+......+-+.+.+.+..+.+|+..-=+---..+++++|.+.|++..
T Consensus 59 ~v~~al~iil~d~~Vk~IlINI----fGGI~rcD~vA~GIv~A~~e~~~~iPiVVRL~Gtn~eeg~~iL~~sgl~i~ 131 (148)
T d1eucb1 59 QVYQAFKLLTADPKVEAILVNI----FGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPIT 131 (148)
T ss_dssp HHHHHHHHTTSCTTCCEEEEEE----ECSSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHHHHHTTCSSEE
T ss_pred HHHHHHHHHHCCCCCCEEEEEE----EEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEE
T ss_conf 9999999997799846899885----673100889999999999863998508999426875899999997799849
No 36
>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.82 E-value=11 Score=16.08 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=11.3
Q ss_pred CCCEEEEEEEECCCCE
Q ss_conf 8876899963076511
Q gi|254780976|r 25 GTKRIGLAISDPGRRF 40 (160)
Q Consensus 25 G~kriGiAisd~~~~~ 40 (160)
+..|+|+||+|..--+
T Consensus 28 ~~pR~gvaIGD~vlDL 43 (118)
T d1hyoa1 28 PKPRIGVAIGDQILDL 43 (118)
T ss_dssp CSCEEEEEETTEEEET
T ss_pred CCCEEEEEECCEECCH
T ss_conf 9832457678751569
No 37
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=28.31 E-value=17 Score=14.83 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 568989999865167758997213578888844799999999998404899779983
Q gi|254780976|r 54 QTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWD 110 (160)
Q Consensus 54 ~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~D 110 (160)
.....|.+.+++++++.||+|-. |..+-.....-.....+..+ ..+||..+-
T Consensus 94 ~~~~~i~~~a~~~~~dlIv~g~~----~~~~~~~~l~Gs~~~~ll~~-~~~pVlvV~ 145 (147)
T d1tq8a_ 94 APVDALVNLADEEKADLLVVGNV----GLSTIAGRLLGSVPANVSRR-AKVDVLIVH 145 (147)
T ss_dssp SHHHHHHHHHHHTTCSEEEEECC----CCCSHHHHHTBBHHHHHHHH-TTCEEEEEC
T ss_pred CHHHHHHHHHHCCCEEEEEECCC----CCCCCCCCCCCCHHHHHHHH-CCCCEEEEE
T ss_conf 76999987642351369985578----99863325026499999970-899889994
No 38
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=28.10 E-value=17 Score=14.80 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 5689899998651677589972135788888447999999999984048997799836716
Q gi|254780976|r 54 QTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLT 114 (160)
Q Consensus 54 ~~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~DEr~T 114 (160)
.....|.+.+++++++.+|+|-. ..++-..-.. -..+..++.+ .++||..+-++-|
T Consensus 105 ~~~~~I~~~a~~~~~dliV~G~~-~~~~~~~~~~---GS~a~~vl~~-s~~pVlvV~~~~~ 160 (160)
T d1mjha_ 105 IPHEEIVKIAEDEGVDIIIMGSH-GKTNLKEILL---GSVTENVIKK-SNKPVLVVKRKNS 160 (160)
T ss_dssp CHHHHHHHHHHHTTCSEEEEESC-CSSCCTTCSS---CHHHHHHHHH-CCSCEEEECCCCC
T ss_pred CHHHHHHHHHHCCCCCEEEECCC-CCCCCCCCCC---CCHHHHHHHC-CCCCEEEECCCCC
T ss_conf 58987766520242214776168-9986421410---7099999962-9998999828999
No 39
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}
Probab=24.13 E-value=20 Score=14.36 Aligned_cols=50 Identities=10% Similarity=0.095 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6898999986516775899721357888884479999999999840489977998
Q gi|254780976|r 55 TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109 (160)
Q Consensus 55 ~~~~l~~ii~e~~i~~iVvGlP~~~~g~~~~~~~~v~~f~~~L~~~~~~l~v~~~ 109 (160)
....|.+.+++++++.+|+|-+-. ++-..... -..+..+.. ...+||..+
T Consensus 86 ~~~~I~~~a~~~~~dliV~G~~~~-~~~~~~~~---Gs~~~~ll~-~~~~pVlvV 135 (135)
T d2z3va1 86 PAEAILQAARAEKADLIVMGTRGL-GALGSLFL---GSQSQRVVA-EAPCPVLLV 135 (135)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSCS-SSCBCSSC---BHHHHHHHH-HCSSCEEEE
T ss_pred HHHHHHHHHHHHHEEEEEECCCCC-CCCCCCCC---CCHHHHHHH-HCCCCEEEC
T ss_conf 689999875200011577536799-85210413---709999997-099999959
No 40
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]}
Probab=23.97 E-value=20 Score=14.34 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=5.8
Q ss_pred CEEEEEECCCCCCC
Q ss_conf 75899721357888
Q gi|254780976|r 69 AAFIIGLPLNMNGS 82 (160)
Q Consensus 69 ~~iVvGlP~~~~g~ 82 (160)
+.+|+|.|-.-+|.
T Consensus 48 d~~i~~~sT~G~Ge 61 (179)
T d1yoba1 48 QFLILGTPTLGEGE 61 (179)
T ss_dssp SEEEEEEECBTTTB
T ss_pred CEEEEEECCCCCCC
T ss_conf 77999954568997
No 41
>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]}
Probab=20.50 E-value=23 Score=13.98 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=18.9
Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCEEEE
Q ss_conf 7758997213578888844799999999998404-89977998
Q gi|254780976|r 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFW 109 (160)
Q Consensus 68 i~~iVvGlP~~~~g~~~~~~~~v~~f~~~L~~~~-~~l~v~~~ 109 (160)
-+.+|+|-|-.-+|..-+ ....|...+.... .+.++.+.
T Consensus 47 ~d~~i~g~sT~g~G~~p~---~~~~~~~~l~~~~l~~k~~a~f 86 (169)
T d1oboa_ 47 YQYLIIGCPTLNIGELQS---DWEGLYSELDDVDFNGKLVAYF 86 (169)
T ss_dssp CSEEEEEEEEETTTEECH---HHHHHHTTGGGCCCTTCEEEEE
T ss_pred CCEEEEEEECCCCCCCCH---HHHHHHHHHCCCCCCCCCEEEE
T ss_conf 977999980479997974---6888665530267899843688
Done!