BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780976|ref|YP_003065389.1| Holliday junction resolvase
YqgF [Candidatus Liberibacter asiaticus str. psy62]
(160 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040653|gb|ACT57449.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
str. psy62]
Length = 160
Score = 323 bits (829), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL
Sbjct: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ
Sbjct: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG
Sbjct: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
>gi|315122522|ref|YP_004063011.1| Holliday junction resolvase YqgF [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495924|gb|ADR52523.1| Holliday junction resolvase YqgF [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 167
Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 140/159 (88%), Positives = 152/159 (95%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MSILLIEDLVKSLKPNQPIASIDLGTK+IG+AISD GRRFAHPRPFL+RKK+TQTALELL
Sbjct: 1 MSILLIEDLVKSLKPNQPIASIDLGTKKIGIAISDLGRRFAHPRPFLIRKKITQTALELL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
SF TTENIAAF+IGLPLNMNGSEGPRV STRAFV NMIDR++ VPF+FWDERLTTVSAQQ
Sbjct: 61 SFATTENIAAFVIGLPLNMNGSEGPRVQSTRAFVQNMIDREINVPFIFWDERLTTVSAQQ 120
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
ILIDM+VSRKKR QKVDSIAA+LILQEVLDRIS L+SS+
Sbjct: 121 ILIDMDVSRKKRAQKVDSIAASLILQEVLDRISSLKSSE 159
>gi|209549118|ref|YP_002281035.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|226731643|sp|B5ZMI7|RUVX_RHILW RecName: Full=Putative Holliday junction resolvase
gi|209534874|gb|ACI54809.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 163
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 121/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A L+
Sbjct: 1 MTVLTIEEMAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALM 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F T E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFATAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|218661529|ref|ZP_03517459.1| holliday junction resolvase protein [Rhizobium etli IE4771]
Length = 166
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P + IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 3 MTVLTIEEMAATLAPGKAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALL 62
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F TE +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 63 DFAATEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 121
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 122 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSAG 161
>gi|327192100|gb|EGE59078.1| holliday junction resolvase protein [Rhizobium etli CNPAF512]
Length = 164
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 119/160 (74%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAAKEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|86357479|ref|YP_469371.1| holliday junction resolvase protein [Rhizobium etli CFN 42]
gi|146325597|sp|Q2K942|RUVX_RHIEC RecName: Full=Putative Holliday junction resolvase
gi|86281581|gb|ABC90644.1| probable holliday junction resolvase protein [Rhizobium etli CFN
42]
Length = 164
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 121/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ + L P Q IA +DLGTK IGL+ISD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEIAEILPPGQAIAGLDLGTKTIGLSISDLGRRFATPRPVIRRIKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F + E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PF++WDERL+TV+A++
Sbjct: 61 DFASAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFIYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+LI+M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 VLIEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSAG 159
>gi|190891542|ref|YP_001978084.1| holliday junction resolvase [Rhizobium etli CIAT 652]
gi|226731642|sp|B3PXX0|RUVX_RHIE6 RecName: Full=Putative Holliday junction resolvase
gi|190696821|gb|ACE90906.1| holliday junction resolvase protein [Rhizobium etli CIAT 652]
Length = 164
Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 118/160 (73%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F E +A F+IGLP+NM+GS GPRV +TRAFV NM + K +PFV+WDERL+TV+A++
Sbjct: 61 DFAAKERVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EEKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|222085624|ref|YP_002544154.1| holliday junction resolvase protein [Agrobacterium radiobacter K84]
gi|254767490|sp|B9JDM7|RUVX_AGRRK RecName: Full=Putative Holliday junction resolvase
gi|221723072|gb|ACM26228.1| holliday junction resolvase protein [Agrobacterium radiobacter K84]
Length = 164
Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/155 (59%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ L IEDL L P Q IA +DLGTK IGLA+SD GRRFA PRP + R K TQ A LL
Sbjct: 1 MTTLTIEDLAVMLLPGQAIAGLDLGTKTIGLAMSDLGRRFATPRPVIKRVKFTQDAQTLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+F E +AAF+IGLP+NM+GS GPRV +TRAFV +M D K +PFV+WDERL+TV+A++
Sbjct: 61 AFAEKEKVAAFVIGLPMNMDGSTGPRVQATRAFVRSMAD-KTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L++M+VSR KR +++DS AA+ ILQ LDR+S L
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSAL 154
>gi|222148317|ref|YP_002549274.1| Holliday junction resolvase-like protein [Agrobacterium vitis S4]
gi|254767491|sp|B9JVI8|RUVX_AGRVS RecName: Full=Putative Holliday junction resolvase
gi|221735305|gb|ACM36268.1| holliday junction resolvase protein [Agrobacterium vitis S4]
Length = 158
Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 89/158 (56%), Positives = 119/158 (75%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ L IE+L +SL+P Q +A +DLGTK IGLA+SD GRRFA PR + R K T+ A LL
Sbjct: 1 MATLEIEELAQSLQPGQAVAGLDLGTKTIGLAMSDLGRRFASPRTVIKRTKFTKDAEVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+F E +AAF+IGLP+NM+GS GPRV +TRAFV M + K +PFV+WDERL+TV+A +
Sbjct: 61 AFAAKEKVAAFVIGLPINMDGSSGPRVQATRAFVRAMAE-KTDIPFVYWDERLSTVAATR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++M+VSR KR +++DS AA+ ILQ LDR+S L S+
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSGLAST 157
>gi|241204443|ref|YP_002975539.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240858333|gb|ACS56000.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 164
Score = 187 bits (474), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PR + R K T A LL
Sbjct: 1 MTVLTIEEMAETLVPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F +E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|325292676|ref|YP_004278540.1| Holliday junction resolvase [Agrobacterium sp. H13-3]
gi|325060529|gb|ADY64220.1| putative Holliday junction resolvase [Agrobacterium sp. H13-3]
Length = 159
Score = 186 bits (473), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL IE+L ++L+P Q IA +DLGTK IGLA+SD RRFA PRP + R K T+ A LL
Sbjct: 1 MAILTIEELAETLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTRDAEVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+F E ++AFIIGLP+NM+GS GPR +TRAFV M K +PF+FWDERL+TV+A++
Sbjct: 61 AFAEKEKVSAFIIGLPINMDGSAGPRAQATRAFVRTM-GEKTALPFIFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+L++M+VSR KR +++DS AA+ ILQ LDR+S L + G
Sbjct: 120 VLLEMDVSRAKRAERIDSAAASFILQGALDRLSALARATG 159
>gi|116251833|ref|YP_767671.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
bv. viciae 3841]
gi|146325598|sp|Q1MHJ8|RUVX_RHIL3 RecName: Full=Putative Holliday junction resolvase
gi|115256481|emb|CAK07565.1| putative Holliday junction resolvase [Rhizobium leguminosarum bv.
viciae 3841]
Length = 164
Score = 186 bits (472), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 119/160 (74%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PR + R K A LL
Sbjct: 1 MTVLTIEEMAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFAIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F +E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|15888641|ref|NP_354322.1| hypothetical protein Atu1316 [Agrobacterium tumefaciens str. C58]
gi|32130043|sp|Q8UFT1|RUVX_AGRT5 RecName: Full=Putative Holliday junction resolvase
gi|15156369|gb|AAK87107.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 159
Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/155 (56%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ L IE+L ++L+P Q IA +DLGTK IGLA+SD RRFA PRP + R K TQ A LL
Sbjct: 1 MATLTIEELAQTLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+F E +AAF+IGLP+NM+GS GPR +TRAFV M K +PF++WDERL+TV+A++
Sbjct: 61 AFAEKEKVAAFVIGLPINMDGSAGPRAQATRAFVRTM-GEKTALPFIYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L++M+VSR KR +++DS AA+ ILQ LDR+S L
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSAL 154
>gi|15965062|ref|NP_385415.1| hypothetical protein SMc01355 [Sinorhizobium meliloti 1021]
gi|307301133|ref|ZP_07580902.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti BL225C]
gi|32130055|sp|Q92QL0|RUVX_RHIME RecName: Full=Putative Holliday junction resolvase
gi|15074241|emb|CAC45888.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306904088|gb|EFN34674.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti BL225C]
Length = 165
Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/155 (57%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL +E+L + L P Q +A +DLGTK IG+++SD GRRFA PR + R K A LL
Sbjct: 1 MAILTMEELAERLPPYQSVAGLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
SF E IAAFIIGLP+NM+GSEGPR +TRAFV NM + K +PFV WDERL+TV+A++
Sbjct: 61 SFAEKEKIAAFIIGLPVNMDGSEGPRCQATRAFVRNMGE-KTDIPFVLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+LI+M+VSRKKR +++DS AA+ ILQ LDR++ L
Sbjct: 120 VLIEMDVSRKKRAERIDSAAASFILQGALDRLASL 154
>gi|163759344|ref|ZP_02166430.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43]
gi|162283748|gb|EDQ34033.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43]
Length = 162
Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 119/158 (75%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ +EDL L P Q IA +DLGTK IGLA+SD R A PRP + R+K T A++LL
Sbjct: 1 MAVMEVEDLEAFLTPGQTIAGLDLGTKTIGLAVSDLSRSLASPRPVIKRRKFTLDAIDLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + + A +IGLP+NM+GSEGPRV +TRAFV NMI+ K +PFVFWDERL+TV+A++
Sbjct: 61 TALKRDQVGAVVIGLPVNMDGSEGPRVQATRAFVRNMIE-KTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI+M+VSRKKR +++DS AA+ ILQ LDR+ L ++
Sbjct: 120 ALIEMDVSRKKRAERIDSAAASFILQGALDRLQGLRAA 157
>gi|307317866|ref|ZP_07597304.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83]
gi|306896628|gb|EFN27376.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83]
Length = 165
Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL +E+L + L P Q +A +DLGTK IG+++SD GRRFA PR + R K A LL
Sbjct: 1 MAILTMEELAERLPPYQSVAGLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
SF E IAAFIIGLP+NM+GSEGPR +TRAFV M + K +PFV WDERL+TV+A++
Sbjct: 61 SFAEKEKIAAFIIGLPVNMDGSEGPRCQATRAFVRTMGE-KTDIPFVLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+LI+M+VSRKKR +++DS AA+ ILQ LDR++ L
Sbjct: 120 VLIEMDVSRKKRAERIDSAAASFILQGALDRLASL 154
>gi|218680912|ref|ZP_03528809.1| Holliday junction resolvase YqgF [Rhizobium etli CIAT 894]
Length = 144
Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEMAGTLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F E +A FIIGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAAAEKVAGFIIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALIL 145
L++M+VSR KR +++DS AA+ IL
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFIL 144
>gi|150396164|ref|YP_001326631.1| Holliday junction resolvase-like protein [Sinorhizobium medicae
WSM419]
gi|167013052|sp|A6U816|RUVX_SINMW RecName: Full=Putative Holliday junction resolvase
gi|150027679|gb|ABR59796.1| Holliday junction resolvase YqgF [Sinorhizobium medicae WSM419]
Length = 165
Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/155 (55%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL IE+L + L P Q +A +DLGTK IGL++SD GRRFA PR + R K A LL
Sbjct: 1 MAILTIEELAERLPPYQAVAGLDLGTKTIGLSVSDLGRRFATPRDVIRRVKFGIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F E +AAF+IGLP+NM+GSEGPR +TRAFV M +R +P V WDERL+TV+A++
Sbjct: 61 FFAEKEKVAAFVIGLPVNMDGSEGPRCQATRAFVRTMGER-TDIPSVLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+LI+M+VSRKKR ++DS AA+ ILQ LDR++ L
Sbjct: 120 VLIEMDVSRKKRADRIDSAAASFILQGALDRLALL 154
>gi|110633714|ref|YP_673922.1| Holliday junction resolvase YqgF [Mesorhizobium sp. BNC1]
gi|118597215|sp|Q11IL8|RUVX_MESSB RecName: Full=Putative Holliday junction resolvase
gi|110284698|gb|ABG62757.1| Holliday junction resolvase YqgF [Chelativorans sp. BNC1]
Length = 160
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/160 (53%), Positives = 112/160 (70%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MS++ IE+L K+ +P+A +DLGTK IG+AISD G FA PR +L RKK + A LL
Sbjct: 1 MSVVSIEELEKARAYGRPLAGLDLGTKTIGVAISDLGLSFATPRAYLPRKKFQEDAKALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++ EN I+GLP+NM+GSEGPR STRAFV N+ +PF FWDERL+TV+A++
Sbjct: 61 HLLSRENAGGVIVGLPINMDGSEGPRAQSTRAFVRNL-QPLTKLPFAFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
LI+M+VSR KR Q++DS AAA ILQ LDR+ L + G
Sbjct: 120 ALIEMDVSRAKRAQRIDSAAAAFILQGALDRLQALRADPG 159
>gi|319407285|emb|CBI80926.1| putative resolvase [Bartonella sp. 1-1C]
Length = 163
Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MTIISINEVKTHLSLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ A IIGLPLNMNGS GPRV +T+ FV NM +PFVFWDERL+T++A++
Sbjct: 61 QIFNNENVGAIIIGLPLNMNGSNGPRVQATKTFVSNMATY-TEIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+L++M++SR KR ++DS AAA ILQ LDRI L+S+
Sbjct: 120 LLLEMDMSRSKRKSRIDSAAAAFILQGALDRIKTLQSN 157
>gi|319404280|emb|CBI77873.1| putative resolvase [Bartonella rochalimae ATCC BAA-1498]
Length = 163
Score = 169 bits (429), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I +++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MAIISINEVMTHLSLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ A IIGLPLNMNGS GPRV +T+ FV NM +PFVFWDERL+T++A++
Sbjct: 61 QIFNNENVGAIIIGLPLNMNGSNGPRVQATKTFVSNMAT-YTEIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+L++M++SR KR ++DS AAA ILQ LDRI L S+
Sbjct: 120 LLLEMDMSRSKRKSRIDSAAAAFILQGALDRIKTLPSN 157
>gi|163868299|ref|YP_001609508.1| putative resolvase [Bartonella tribocorum CIP 105476]
gi|189046086|sp|A9IU51|RUVX_BART1 RecName: Full=Putative Holliday junction resolvase
gi|161017955|emb|CAK01513.1| putative resolvase [Bartonella tribocorum CIP 105476]
Length = 156
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 112/159 (70%), Gaps = 5/159 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ I +++ L P Q IA +DLGTK IG+AISD G ++PRP L RKK T+ A L+
Sbjct: 1 MTVININEIMTHLLPGQTIAGLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFTEDAHRLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSA 118
EN+ +IGLPLNMNGS G RV +TRAFV NM K Y +PFVFWDERL+T++A
Sbjct: 61 KIFDHENVGVIVIGLPLNMNGSSGSRVQATRAFVSNM---KAYTKIPFVFWDERLSTIAA 117
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
++ L++MNVSR KR +++DS AAA ILQ L+RI L S
Sbjct: 118 ERSLLEMNVSRIKRARRIDSAAAAFILQGALNRIENLHS 156
>gi|240850656|ref|YP_002972056.1| putative Holliday junction resolvase [Bartonella grahamii as4aup]
gi|240267779|gb|ACS51367.1| putative Holliday junction resolvase [Bartonella grahamii as4aup]
Length = 159
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 110/162 (67%), Gaps = 5/162 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ I +++ L P Q IA +DLGTK IG+AISD G ++PRP L RKK T+ A L+
Sbjct: 1 MIVININEVMTHLLPGQTIAGLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFTEDAYTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSA 118
EN+ IIGLPLNMNGS G RV +TRAFV NM K Y +PFVFWDERL+T++A
Sbjct: 61 KIFDRENVGVIIIGLPLNMNGSSGSRVQATRAFVSNM---KAYTKIPFVFWDERLSTIAA 117
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
++ L++MNVSR KR ++DS AAA ILQ L+RI +G
Sbjct: 118 ERSLLEMNVSRAKRASRIDSAAAAFILQGALNRIQNFHHMEG 159
>gi|319405723|emb|CBI79346.1| putative resolvase [Bartonella sp. AR 15-3]
Length = 163
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MAIISINEVTIHLLFGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ A I+GLP+NMNGS GPRV +T+ FV NM +PF+FWDERL+T++A++
Sbjct: 61 EIFNNENVGAIIVGLPINMNGSNGPRVQATKTFVSNMAT-YTKIPFIFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
++MN+SR KR ++DS AAA ILQ LDRI L+S+
Sbjct: 120 YFLEMNMSRSKRKSRIDSAAAAFILQGALDRIKTLQSN 157
>gi|49474241|ref|YP_032283.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse]
gi|62900974|sp|Q6FZS7|RUVX_BARQU RecName: Full=Putative Holliday junction resolvase
gi|49239745|emb|CAF26127.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse]
Length = 159
Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 110/160 (68%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ I +++ L P Q IA +DLG K IG+A+SD G F++PR L RKK+T A L+
Sbjct: 1 MAVININEVITHLLPGQTIAGLDLGKKTIGIAVSDRGLTFSNPRSVLQRKKLTVDARTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ IIGLPLNMNGS GPR +TR FV+NM + +PFVFWDERL+T++A++
Sbjct: 61 QIFDRENVGVVIIGLPLNMNGSSGPRAQATRTFVNNM-EAYTEIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR ++DS AAA ILQ L+RI L +G
Sbjct: 120 SLLEMDVSRAKRATRIDSAAAAFILQGALNRIQNLHYMEG 159
>gi|306841755|ref|ZP_07474441.1| conserved hypothetical protein [Brucella sp. BO2]
gi|306288160|gb|EFM59547.1| conserved hypothetical protein [Brucella sp. BO2]
Length = 162
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
LI M+VSR KR +++DS AAA ILQ LDR+ +
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHMM 154
>gi|254720416|ref|ZP_05182227.1| Holliday junction resolvase-like protein [Brucella sp. 83/13]
gi|265985435|ref|ZP_06098170.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306839007|ref|ZP_07471828.1| conserved hypothetical protein [Brucella sp. NF 2653]
gi|264664027|gb|EEZ34288.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306405913|gb|EFM62171.1| conserved hypothetical protein [Brucella sp. NF 2653]
Length = 162
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
LI M+VSR KR +++DS AAA ILQ LDR+ +
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHMM 154
>gi|23500341|ref|NP_699781.1| Holliday junction resolvase-like protein [Brucella suis 1330]
gi|161620659|ref|YP_001594545.1| hypothetical protein BCAN_B0598 [Brucella canis ATCC 23365]
gi|163844749|ref|YP_001622404.1| hypothetical protein BSUIS_B0594 [Brucella suis ATCC 23445]
gi|225629090|ref|ZP_03787123.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|225686383|ref|YP_002734355.1| Holliday junction resolvase-like protein [Brucella melitensis ATCC
23457]
gi|254699833|ref|ZP_05161661.1| Holliday junction resolvase-like protein [Brucella suis bv. 5 str.
513]
gi|254702971|ref|ZP_05164799.1| Holliday junction resolvase-like protein [Brucella suis bv. 3 str.
686]
gi|254705907|ref|ZP_05167735.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
M163/99/10]
gi|254711134|ref|ZP_05172945.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
B2/94]
gi|256015374|ref|YP_003105383.1| putative Holliday junction resolvase [Brucella microti CCM 4915]
gi|256029515|ref|ZP_05443129.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
M292/94/1]
gi|256059210|ref|ZP_05449416.1| Holliday junction resolvase-like protein [Brucella neotomae 5K33]
gi|256111486|ref|ZP_05452500.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 3
str. Ether]
gi|256157710|ref|ZP_05455628.1| Holliday junction resolvase-like protein [Brucella ceti M490/95/1]
gi|256253318|ref|ZP_05458854.1| Holliday junction resolvase-like protein [Brucella ceti B1/94]
gi|256262476|ref|ZP_05465008.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9]
gi|260167394|ref|ZP_05754205.1| Holliday junction resolvase-like protein [Brucella sp. F5/99]
gi|260568115|ref|ZP_05838584.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4
str. 40]
gi|261220434|ref|ZP_05934715.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261313336|ref|ZP_05952533.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261318725|ref|ZP_05957922.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261323159|ref|ZP_05962356.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261750307|ref|ZP_05994016.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513]
gi|261753580|ref|ZP_05997289.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261756804|ref|ZP_06000513.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99]
gi|265986523|ref|ZP_06099080.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265992983|ref|ZP_06105540.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|265996215|ref|ZP_06108772.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|306845931|ref|ZP_07478498.1| conserved hypothetical protein [Brucella sp. BO1]
gi|32130035|sp|Q8FW65|RUVX_BRUSU RecName: Full=Putative Holliday junction resolvase
gi|189046087|sp|A9MBN7|RUVX_BRUC2 RecName: Full=Putative Holliday junction resolvase
gi|189046088|sp|A9WYR6|RUVX_BRUSI RecName: Full=Putative Holliday junction resolvase
gi|254767499|sp|C0RLB8|RUVX_BRUMB RecName: Full=Putative Holliday junction resolvase
gi|23463956|gb|AAN33786.1| conserved hypothetical protein TIGR00250 [Brucella suis 1330]
gi|161337470|gb|ABX63774.1| conserved hypothetical protein [Brucella canis ATCC 23365]
gi|163675472|gb|ABY39582.1| conserved hypothetical protein [Brucella suis ATCC 23445]
gi|225615586|gb|EEH12635.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|225642488|gb|ACO02401.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
gi|255998034|gb|ACU49721.1| putative Holliday junction resolvase [Brucella microti CCM 4915]
gi|260154780|gb|EEW89861.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4
str. 40]
gi|260919018|gb|EEX85671.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261297948|gb|EEY01445.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261299139|gb|EEY02636.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261302362|gb|EEY05859.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261736788|gb|EEY24784.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99]
gi|261740060|gb|EEY27986.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513]
gi|261743333|gb|EEY31259.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|262550512|gb|EEZ06673.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|262763853|gb|EEZ09885.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263092212|gb|EEZ16509.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9]
gi|264658720|gb|EEZ28981.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|306273566|gb|EFM55411.1| conserved hypothetical protein [Brucella sp. BO1]
gi|326410755|gb|ADZ67819.1| Holliday junction resolvase-like protein [Brucella melitensis M28]
gi|326554047|gb|ADZ88686.1| Holliday junction resolvase-like protein [Brucella melitensis
M5-90]
Length = 162
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 106/155 (68%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
LI M+VSR KR ++DS AAA ILQ LDR+ +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154
>gi|62317546|ref|YP_223399.1| Holliday junction resolvase-like protein [Brucella abortus bv. 1
str. 9-941]
gi|83269527|ref|YP_418818.1| Holliday junction resolvase-like protein [Brucella melitensis
biovar Abortus 2308]
gi|189022801|ref|YP_001932542.1| Ribonuclease RNase H fold containing [Brucella abortus S19]
gi|237817094|ref|ZP_04596086.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|254691043|ref|ZP_05154297.1| Holliday junction resolvase-like protein [Brucella abortus bv. 6
str. 870]
gi|254695650|ref|ZP_05157478.1| Holliday junction resolvase-like protein [Brucella abortus bv. 3
str. Tulya]
gi|254698827|ref|ZP_05160655.1| Holliday junction resolvase-like protein [Brucella abortus bv. 2
str. 86/8/59]
gi|254732274|ref|ZP_05190852.1| Holliday junction resolvase-like protein [Brucella abortus bv. 4
str. 292]
gi|256256228|ref|ZP_05461764.1| Holliday junction resolvase-like protein [Brucella abortus bv. 9
str. C68]
gi|260544782|ref|ZP_05820603.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC
8038]
gi|260756639|ref|ZP_05868987.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870]
gi|260760069|ref|ZP_05872417.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292]
gi|260763308|ref|ZP_05875640.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str.
86/8/59]
gi|260882456|ref|ZP_05894070.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261216050|ref|ZP_05930331.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str.
Tulya]
gi|297249585|ref|ZP_06933286.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196]
gi|81309292|sp|Q577Z6|RUVX_BRUAB RecName: Full=Putative Holliday junction resolvase
gi|146325555|sp|Q2YKL6|RUVX_BRUA2 RecName: Full=Putative Holliday junction resolvase
gi|226725492|sp|B2SB59|RUVX_BRUA1 RecName: Full=Putative Holliday junction resolvase
gi|62197739|gb|AAX76038.1| conserved hypothetical protein TIGR00250 [Brucella abortus bv. 1
str. 9-941]
gi|82939801|emb|CAJ12809.1| Conserved hypothetical protein 250:Ribonuclease RNase H fold
containing [Brucella melitensis biovar Abortus 2308]
gi|189021375|gb|ACD74096.1| Ribonuclease RNase H fold containing [Brucella abortus S19]
gi|237787907|gb|EEP62123.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|260098053|gb|EEW81927.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC
8038]
gi|260670387|gb|EEX57327.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292]
gi|260673729|gb|EEX60550.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str.
86/8/59]
gi|260676747|gb|EEX63568.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870]
gi|260871984|gb|EEX79053.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260917657|gb|EEX84518.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str.
Tulya]
gi|297173454|gb|EFH32818.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196]
Length = 162
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 106/155 (68%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIMIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
LI M+VSR KR ++DS AAA ILQ LDR+ +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154
>gi|114707193|ref|ZP_01440091.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506]
gi|114537389|gb|EAU40515.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506]
Length = 165
Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 116/162 (71%), Gaps = 5/162 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MS++ IE+ ++LK +P+A +DLGTK IG+A+SD RFA+PR L RKK TQ A L
Sbjct: 1 MSVVEIEEFAETLKLGKPLAGLDLGTKTIGVAVSDRSFRFANPRSVLKRKKFTQDAQALK 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSA 118
+ + + ++A ++GLPLNM+GS GPR +T+AF N +D + P + WDERL+TV+A
Sbjct: 61 AMLDADEVSAIVLGLPLNMDGSSGPRAQATKAFSRNYAALDER---PILLWDERLSTVAA 117
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
++ L+D+++SRKKR +++DS AAA+ILQ VLDR++ L G
Sbjct: 118 ERNLLDIDMSRKKRGERIDSAAAAIILQGVLDRLANLTRCPG 159
>gi|260459185|ref|ZP_05807440.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum
WSM2075]
gi|259034739|gb|EEW35995.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum
WSM2075]
Length = 168
Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ IE L L + +A +DLG K IG+A+SD G FAHPRP ++R+K + A LL
Sbjct: 1 MAVITIEQLPARLADGRTLAGLDLGDKTIGVAVSDRGFSFAHPRPVIIRRKFSLDAAVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + EN A +IGLP+NM+GSEGPR +RAFV NM + +PFVFWDERL+TV+A++
Sbjct: 61 ALLKKENAGAVVIGLPINMDGSEGPRAQKSRAFVRNMA-QLSDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI+M+ SR KR K+DS AAA ILQ VLDR+ L +S
Sbjct: 120 TLIEMDFSRAKRAGKIDSAAAAFILQGVLDRLQSLAAS 157
>gi|49475587|ref|YP_033628.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1]
gi|62900975|sp|Q6G3F1|RUVX_BARHE RecName: Full=Putative Holliday junction resolvase
gi|49238394|emb|CAF27621.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1]
Length = 159
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I +++ L P Q IA +DLGTK IG+A+SD G F++PR L R+K T A L+
Sbjct: 1 MAIININEVMIHLLPGQIIAGLDLGTKTIGIAVSDRGLIFSNPRSVLQRQKFTVDAQTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ IIGLPLNMNGS GPR +TR FV NM + +PFVFWDERL+T++A++
Sbjct: 61 KIFDHENVGVIIIGLPLNMNGSSGPRAQATRTFVRNM-EAYTEIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR ++DS AAA ILQ L+RI L +G
Sbjct: 120 SLLEMDVSRAKRATRIDSAAAAFILQGALNRIHNLHHIEG 159
>gi|17989017|ref|NP_541650.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1
str. 16M]
gi|148558591|ref|YP_001257584.1| Holliday junction resolvase-like protein [Brucella ovis ATCC 25840]
gi|256043494|ref|ZP_05446421.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1
str. Rev.1]
gi|260564689|ref|ZP_05835174.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M]
gi|265989912|ref|ZP_06102469.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|32130048|sp|Q8YC60|RUVX_BRUME RecName: Full=Putative Holliday junction resolvase
gi|167012699|sp|A5VUS9|RUVX_BRUO2 RecName: Full=Putative Holliday junction resolvase
gi|17984856|gb|AAL53914.1| DNA integration/recombination/invertion protein [Brucella
melitensis bv. 1 str. 16M]
gi|148369876|gb|ABQ62748.1| conserved hypothetical protein TIGR00250 [Brucella ovis ATCC 25840]
gi|260152332|gb|EEW87425.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M]
gi|263000581|gb|EEZ13271.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
Length = 162
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 105/155 (67%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+ ++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAVER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
LI M+VSR KR ++DS AAA ILQ LDR+ +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154
>gi|254712407|ref|ZP_05174218.1| Holliday junction resolvase-like protein [Brucella ceti M644/93/1]
gi|254715479|ref|ZP_05177290.1| Holliday junction resolvase-like protein [Brucella ceti M13/05/1]
gi|261217214|ref|ZP_05931495.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261320085|ref|ZP_05959282.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|260922303|gb|EEX88871.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292775|gb|EEX96271.1| conserved hypothetical protein [Brucella ceti M644/93/1]
Length = 162
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 106/155 (68%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FA+PRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAYPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
LI M+VSR KR ++DS AAA ILQ LDR+ +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154
>gi|319898952|ref|YP_004159045.1| resolvase [Bartonella clarridgeiae 73]
gi|319402916|emb|CBI76467.1| putative resolvase [Bartonella clarridgeiae 73]
Length = 164
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MAIININEVTTHLLLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIHRKKFTLDALTLV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ A +IGLP+NM+GS GPRV +T+ FV NM +PFVFWDERL+T +A++
Sbjct: 61 KVFNNENVGAIVIGLPINMDGSNGPRVQATKTFVSNMA-MYTKIPFVFWDERLSTTAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L+++++SR KR ++DS AAA ILQ LDRI L S+
Sbjct: 120 YLLEIDMSRSKRKSRIDSAAAAFILQGALDRIQTLPSN 157
>gi|239833964|ref|ZP_04682292.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
gi|239822027|gb|EEQ93596.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
Length = 165
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ IE++ L+P + IA +DLGTK IGLA+SD G FAHPRP + R K + A LL
Sbjct: 1 MAVVEIEEIPALLQPGKTIAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFSIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALDADKVGVIVIGLPMNMDGTSGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR +++DS AAA ILQ LDR+ + S
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHSIRRS 157
>gi|121602720|ref|YP_989125.1| hypothetical protein BARBAKC583_0838 [Bartonella bacilliformis
KC583]
gi|167012695|sp|A1UT22|RUVX_BARBK RecName: Full=Putative Holliday junction resolvase
gi|120614897|gb|ABM45498.1| conserved hypothetical protein TIGR00250 [Bartonella bacilliformis
KC583]
Length = 161
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I+ ++ L Q IA +DLGTK IG+AISD F++PRP + RKK T AL+L+
Sbjct: 1 MAIITIDRVISHLLSKQTIAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLDALKLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ IIGLP+NM+GS GPRV +TR FV N I +PF+FWDERL+T++AQ+
Sbjct: 61 KIFDHENVGVAIIGLPINMDGSNGPRVQATRTFVSN-IAMYTKIPFIFWDERLSTIAAQR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++++VSR KR ++DS AAA ILQ LDRI L +
Sbjct: 120 HLLEIDVSRIKRENRIDSAAAAFILQGALDRIQILRQN 157
>gi|90417721|ref|ZP_01225633.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90337393|gb|EAS51044.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 156
Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ +E+ ++ + IA +DLGTK IGLA+SD G+RFA PR L R K T A L+
Sbjct: 1 MAIVSLEEFADAVPSGKTIAGLDLGTKTIGLAVSDRGQRFATPRKVLRRTKFTADANALV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +NI +IGLPLNM+GSEGPR +TRAF+ N R P + WDERL+TV+A++
Sbjct: 61 AALNEDNIVGIVIGLPLNMDGSEGPRAQATRAFLRNY-SRFDERPVLLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ +VSRKKR +++DS AA+ ILQ LDR+S L S
Sbjct: 120 GLLEADVSRKKRAERIDSAAASFILQGALDRLSSLRS 156
>gi|319783699|ref|YP_004143175.1| Holliday junction resolvase YqgF [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169587|gb|ADV13125.1| Holliday junction resolvase YqgF [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 168
Score = 156 bits (394), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I+ IE+L L + +A +DLG K IG+A+SD FAHPRP ++R+K + A LL
Sbjct: 1 MGIITIEELPARLAGGKTLAGLDLGDKTIGVAVSDQRFSFAHPRPVIMRRKFSLDAAVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + EN A +IGLP+NM+GSEGPR +RAFV NM + +PFV WDERL+TV+A++
Sbjct: 61 ALLQKENAGAVVIGLPINMDGSEGPRAQKSRAFVRNMA-QMSDLPFVLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI+M+ SR+KR K+DS AAA ILQ VLDR+ L +S
Sbjct: 120 TLIEMDFSRRKRAGKIDSAAAAFILQGVLDRLQSLHAS 157
>gi|319408539|emb|CBI82192.1| putative resolvase [Bartonella schoenbuchensis R1]
Length = 159
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/160 (51%), Positives = 111/160 (69%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ I ++ L P Q IA +DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MAVINIHEITTHLLPKQTIAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLDALTLV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ +IGLP+NM+GS GPRV +TR FV NM +PFVFWDERL+T++AQ+
Sbjct: 61 QIFNNENVGVAVIGLPVNMDGSNGPRVQATRTFVSNM-GAYTKIPFVFWDERLSTIAAQR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR ++DS AAA ILQ VLDRI L ++G
Sbjct: 120 SLLEMDVSRAKRAARIDSAAAAFILQGVLDRIQNLNHTEG 159
>gi|294853606|ref|ZP_06794278.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026]
gi|294819261|gb|EFG36261.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026]
Length = 162
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 104/155 (67%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+N +G+ GPRV +TRAFV M + FVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNTDGTAGPRVQATRAFVRTM-QPLTDLSFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
LI M+VSR KR ++DS AAA ILQ LDR+ +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMM 154
>gi|153010985|ref|YP_001372199.1| Holliday junction resolvase YqgF [Ochrobactrum anthropi ATCC 49188]
gi|167012742|sp|A6X566|RUVX_OCHA4 RecName: Full=Putative Holliday junction resolvase
gi|151562873|gb|ABS16370.1| Holliday junction resolvase YqgF [Ochrobactrum anthropi ATCC 49188]
Length = 165
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ IE++ L+ Q IA +DLGTK IGLA+SD G FAHPRP + R K + A LL
Sbjct: 1 MAVVEIEEIPALLQSGQTIAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFSIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALDADKVGVIVIGLPMNMDGTSGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR ++DS AA+ ILQ LDR+ + S
Sbjct: 120 ALIGMDVSRGKRADRIDSAAASFILQGALDRLHSIRRS 157
>gi|13470868|ref|NP_102437.1| hypothetical protein mlr0681 [Mesorhizobium loti MAFF303099]
gi|32130057|sp|Q98M90|RUVX_RHILO RecName: Full=Putative Holliday junction resolvase
gi|14021611|dbj|BAB48223.1| mlr0681 [Mesorhizobium loti MAFF303099]
Length = 166
Score = 153 bits (386), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L + +A +DLG K IG+A+SD G FAHPRP ++R+K + A LL+ + EN+ A
Sbjct: 5 LADGRTLAGLDLGDKTIGVAVSDRGFAFAHPRPVIMRRKFSLDAAVLLALLKKENVGAVA 64
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLP+NM+GSEGPR +RAFV NM + +PFVFWDERL+TV+A++ LI+M+ SR KR
Sbjct: 65 IGLPINMDGSEGPRAQKSRAFVRNMA-QLSDLPFVFWDERLSTVAAERTLIEMDFSRAKR 123
Query: 133 IQKVDSIAAALILQEVLDRISFLESS 158
K+DS AAA ILQ VLDR+ L+S+
Sbjct: 124 AGKIDSAAAAFILQGVLDRLQSLDSA 149
>gi|218672210|ref|ZP_03521879.1| Holliday junction resolvase YqgF [Rhizobium etli GR56]
Length = 121
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 92/122 (75%), Gaps = 1/122 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ + L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A L+
Sbjct: 1 MTVLTIEEMARILAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALM 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F TE +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAATEKVAGFVIGLPINMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 IL 122
L
Sbjct: 120 TL 121
>gi|307946447|ref|ZP_07661782.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4]
gi|307770111|gb|EFO29337.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4]
Length = 160
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
L ++D + L PN + +DLGTK IGLA+SD GR A P + RKK TQ A +LL
Sbjct: 7 LSLDDFLSVLPPNSRLIGLDLGTKTIGLALSDLGRGIATPMETIRRKKFTQDAEKLLDIC 66
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
+ ++ ++GLPLNM+GSEGPR +TRAF N+ +K +P +WDERL+T + + L+
Sbjct: 67 AKQEVSGLVLGLPLNMDGSEGPRAQATRAFCRNL-SQKTELPITYWDERLSTAAVTRTLL 125
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ + SR KR + VD +AAA ILQ LDR+ + +S
Sbjct: 126 EADSSRAKRAEVVDKMAAAFILQGFLDRLGHMGAS 160
>gi|328543472|ref|YP_004303581.1| endonuclease involved in recombination [polymorphum gilvum
SL003B-26A1]
gi|326413216|gb|ADZ70279.1| Predicted endonuclease involved in recombination [Polymorphum
gilvum SL003B-26A1]
Length = 166
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
L +ED V +L P + +DLGT+ IGLA+SD GR A P + R+K T A +LL
Sbjct: 7 LSLEDFVAALAPGTRLIGLDLGTRTIGLALSDLGRGIASPLETIRRRKFTLDAEQLLKIC 66
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
+ ++GLPLNM+GSEGPRV +TRAF N+ + K +P +WDERL+T + + LI
Sbjct: 67 AEHRVGGLVLGLPLNMDGSEGPRVQATRAFARNLAE-KTDLPITYWDERLSTAAVTRTLI 125
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+ + SR +R + VD +AAA ILQ LDR+ +L S+
Sbjct: 126 EADRSRARRAELVDKMAAAYILQGFLDRLGYLSRSR 161
>gi|217976928|ref|YP_002361075.1| Holliday junction resolvase-like protein [Methylocella silvestris
BL2]
gi|254767519|sp|B8EPC5|RUVX_METSB RecName: Full=Putative Holliday junction resolvase
gi|217502304|gb|ACK49713.1| Holliday junction resolvase YqgF [Methylocella silvestris BL2]
Length = 161
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 102/155 (65%), Gaps = 1/155 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
IL + DL + P Q + IDLGTK IGLA+SD RR A P + R K ++ A+ L+
Sbjct: 5 ILEVADLPARVGPRQRLIGIDLGTKTIGLALSDVERRIATPLETIQRIKFSKDAVRLIEL 64
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ A IIGLPLNM+GS+GPRV +TRAFV ++ V PFV+WDERL+T + + L
Sbjct: 65 AEKFDAGALIIGLPLNMDGSQGPRVQATRAFVRSL-SALVSKPFVYWDERLSTAAVTRSL 123
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
ID +VSR KR + VD +AAA ILQ VLDR+ +E+
Sbjct: 124 IDQDVSRLKRAEVVDKMAAAYILQGVLDRLRRIEA 158
>gi|310816166|ref|YP_003964130.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare
Y25]
gi|308754901|gb|ADO42830.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare
Y25]
Length = 156
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+ED +L P + + +DLGT IG+A+SD A P + RKK + A LL I
Sbjct: 6 VEDFAAALPPMRAVCGLDLGTVTIGVAVSDLMLSVASPLETIKRKKFSLDAEALLKIIAA 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
NIA ++GLPLNM+GSEGPR STRAF N+ R +P V+WDERL+TV+A++ L++
Sbjct: 66 RNIAGIVLGLPLNMDGSEGPRAQSTRAFARNL-SRLTDLPIVYWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ SRK+R + +D +AA ILQ VLDR+ L
Sbjct: 125 DTSRKRRDEVIDHVAAGFILQGVLDRLRHL 154
>gi|254474193|ref|ZP_05087584.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062]
gi|211956723|gb|EEA91932.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062]
Length = 165
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
L +ED +L + + IDLGTK IGLA++D GR+ A P + RKK TQ LL
Sbjct: 7 LSLEDFCDALYDDDRLIGIDLGTKTIGLALTDSGRQIASPLETIKRKKFTQDVERLLDLC 66
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
+ +IGLPLNM+G+EGPR +TRAFV N+ +K +P +WDERL+T + + LI
Sbjct: 67 HEHGVFGLVIGLPLNMDGTEGPRCQATRAFVRNLA-QKTEIPITYWDERLSTAAVTRTLI 125
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ + SR +R + VD +AA ILQ LDR+++ +S
Sbjct: 126 EADRSRARRAELVDKMAATYILQGFLDRVNYGGTS 160
>gi|118590189|ref|ZP_01547592.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614]
gi|118437161|gb|EAV43799.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614]
Length = 162
Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
L +ED V ++ + +DLGTK IGLA+SD G A P + RKK T A +LL+
Sbjct: 7 LSLEDFVAAVPARTRLIGLDLGTKTIGLALSDLGLGIASPMETIRRKKFTLDAEQLLTIC 66
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
+ + ++GLPLNM+GSEGPR +TRAFV N+ +K +P +WDERL+T + + L+
Sbjct: 67 AKQGVGGIVLGLPLNMDGSEGPRAQATRAFVRNL-SQKTDLPITYWDERLSTAAVTRTLL 125
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ + SR KR VD +AAA ILQ LDR+ F+ G
Sbjct: 126 EADTSRAKRADVVDKMAAAYILQGFLDRLGFMGLDNG 162
>gi|254504549|ref|ZP_05116700.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii
DFL-11]
gi|222440620|gb|EEE47299.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii
DFL-11]
Length = 161
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
L +ED + ++ + +DLGTK IGLA+SD GR A P + RKK T A +LL
Sbjct: 7 LSLEDFIAAVPDRTRLIGLDLGTKTIGLALSDLGRGIASPMETIRRKKFTLDAEQLLKIC 66
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
+ + ++GLPLNM+G+EGPRV +TRAF N+ K +P FWDERL+T + + L+
Sbjct: 67 NEQGVGGLVLGLPLNMDGTEGPRVQATRAFTRNLAP-KTDLPMTFWDERLSTAAVTRTLL 125
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ + SR KR + VD +AAA ILQ LDR+ F+
Sbjct: 126 EADSSRAKRAEVVDKMAAAYILQGFLDRLGFM 157
>gi|254439741|ref|ZP_05053235.1| conserved hypothetical protein TIGR00250 [Octadecabacter
antarcticus 307]
gi|198255187|gb|EDY79501.1| conserved hypothetical protein TIGR00250 [Octadecabacter
antarcticus 307]
Length = 162
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
D +L P P+A +DLGTK IG+A+SD G A P + R K AL L +
Sbjct: 8 DFAAALPPYAPLAGLDLGTKTIGVAVSDGGLTIASPLETIKRSKFQADALRLFEITSHRA 67
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
IA ++GLP NM+GSEGPR STRAF N+ R +P +WDERL+TV+A++ L++ +
Sbjct: 68 IAGIVLGLPRNMDGSEGPRAQSTRAFARNL-SRLTDLPITYWDERLSTVAAERALLEADT 126
Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152
SRK+R + +D++AA++ILQ +LDR+
Sbjct: 127 SRKRRAEVIDNVAASIILQGMLDRL 151
>gi|77463236|ref|YP_352740.1| putative endonuclease involved in recombination [Rhodobacter
sphaeroides 2.4.1]
gi|126462110|ref|YP_001043224.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
ATCC 17029]
gi|332558114|ref|ZP_08412436.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
WS8N]
gi|146325603|sp|Q3J2Z5|RUVX_RHOS4 RecName: Full=Putative Holliday junction resolvase
gi|167012752|sp|A3PJD6|RUVX_RHOS1 RecName: Full=Putative Holliday junction resolvase
gi|77387654|gb|ABA78839.1| putative endonuclease involved in recombination [Rhodobacter
sphaeroides 2.4.1]
gi|126103774|gb|ABN76452.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC
17029]
gi|332275826|gb|EGJ21141.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
WS8N]
Length = 160
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
IED + SL +A +DLGTK +G+A+SD RR A P + R K T+ A +L +
Sbjct: 6 IEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTEDAAKLKAIAAE 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ ++GLP NM+GSEGPR STRAF N++ + + +P FWDERL+TV+A++ L++
Sbjct: 66 RRLVGIVLGLPRNMDGSEGPRAQSTRAFARNLV-QVLPLPVGFWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ SRK+R + +D +AA ILQ VLDR+ +L G
Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWLGREGG 159
>gi|221639098|ref|YP_002525360.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
KD131]
gi|254767523|sp|B9KRR7|RUVX_RHOSK RecName: Full=Putative Holliday junction resolvase
gi|221159879|gb|ACM00859.1| Holliday junction resolvase [Rhodobacter sphaeroides KD131]
Length = 160
Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
IED + SL +A +DLGTK +G+A+SD RR A P + R K T+ A +L +
Sbjct: 6 IEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTEDAAKLKAIADE 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ ++GLP NM+GSEGPR STRAF N++ + + +P FWDERL+TV+A++ L++
Sbjct: 66 RRLVGIVLGLPRNMDGSEGPRAQSTRAFARNLV-QVLPLPVGFWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ SRK+R + +D +AA ILQ VLDR+ +L G
Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWLGREGG 159
>gi|6226491|sp|Q52673|RUVX_RHOCA RecName: Full=Putative Holliday junction resolvase
gi|1353874|gb|AAB01816.1| unknown [Rhodobacter capsulatus]
Length = 159
Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
++D +L +A +DLGTK IG+A+SD R A P + R+K T +L+ +
Sbjct: 6 MDDFAAALPRVGALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFTLDVADLMKTVAE 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
IA F++GLP+NM+GSEGPR STRAF N+ ++ +P FWDERL+TV+A++ +++
Sbjct: 66 RQIAGFVLGLPVNMDGSEGPRAQSTRAFARNL-EKLTPLPITFWDERLSTVAAERAMLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
++SRK+R + VD +AA ILQ LDR++ L + G
Sbjct: 125 DLSRKRRAELVDHVAAGFILQGALDRLAHLGRAHG 159
>gi|84517362|ref|ZP_01004716.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53]
gi|84508842|gb|EAQ05305.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53]
Length = 158
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
ED L + +A +DLGT IG+A+SD R A P + R+K T A L T
Sbjct: 7 EDFAAQLPRHGAVAGLDLGTVTIGVAVSDLMRSVATPLETIKRRKFTLDAARLFEITTHR 66
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
IA ++GLP NM+GSEGPR +TRAF N +++ +P FWDERL+TV+A++ +++ +
Sbjct: 67 MIAGLVLGLPRNMDGSEGPRCQATRAFARN-LEKLTPLPITFWDERLSTVAAERAMLEAD 125
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+SRK+R +++D+IAA+ ILQ +LDR+ LE+
Sbjct: 126 MSRKRRAERIDNIAASYILQGMLDRLRHLEA 156
>gi|119383262|ref|YP_914318.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222]
gi|167012745|sp|A1AZC8|RUVX_PARDP RecName: Full=Putative Holliday junction resolvase
gi|119373029|gb|ABL68622.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222]
Length = 158
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+E ++L +A +DLGTK IG+A+SD R A P + R K T A LL +
Sbjct: 6 VETFAEALPRTGAVAGLDLGTKTIGVAVSDGLRGVASPLTVIRRTKFTADAQALLKIVQD 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ ++GLP NM+GSEGPR STRAF N+ +R +P FWDERL+TV+A++ L++
Sbjct: 66 RALVGLVLGLPRNMDGSEGPRAQSTRAFARNL-ERLTPLPITFWDERLSTVAAERALLEG 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ SRK+R + +D +AA ILQ LDR+ FL
Sbjct: 125 DTSRKRRAEVIDQVAAGYILQGALDRLRFL 154
>gi|149913939|ref|ZP_01902471.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b]
gi|149812223|gb|EDM72054.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b]
Length = 158
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+L PI +DLGTK IG+AISD A P + RKK + A LL T +A
Sbjct: 12 TLPKGHPIMGLDLGTKTIGVAISDRLLSVATPTETIKRKKFSVDAARLLEIATQREVAGL 71
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLP NM+GSEGPR STRAF N+ + +P FWDERL+TV+A++ L++ + SRK+
Sbjct: 72 VLGLPRNMDGSEGPRCQSTRAFARNL-EPLTELPITFWDERLSTVAAERALLEADTSRKR 130
Query: 132 RIQKVDSIAAALILQEVLDRISFLESSK 159
R + +D++AA+ ILQ VLDR++ + +++
Sbjct: 131 RAEVIDNVAASYILQGVLDRLTHMRAAQ 158
>gi|260575164|ref|ZP_05843165.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2]
gi|259022786|gb|EEW26081.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2]
Length = 160
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 98/161 (60%), Gaps = 2/161 (1%)
Query: 1 MSIL-LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
MS+L IE+ +L + +A +D G K IG+A+SD R A P + R K T A L
Sbjct: 1 MSVLETIEEFAATLPARRAVAGLDFGEKTIGVAVSDLSRSVATPLLTIRRVKFTDDAAAL 60
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
IT IA I+GLP NM+GSEGPR +TRAF N+ R +P FWDERL+TV+A
Sbjct: 61 AKIITERQIAGLILGLPRNMDGSEGPRAQATRAFARNL-SRLTPLPIGFWDERLSTVAAT 119
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ L++ + SRK+R + +D +AA ILQ VLDR++ + G
Sbjct: 120 RALLEADTSRKRRAEVIDHVAAGYILQGVLDRMAHMTREAG 160
>gi|312115158|ref|YP_004012754.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC
17100]
gi|311220287|gb|ADP71655.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC
17100]
Length = 156
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+ DL+ LK ++ + +D+GTK +GLA+SD R+ A P + R K T A++LL+
Sbjct: 8 LPDLISRLKRDERLMGLDVGTKTVGLALSDVMRQIATPFDTIRRTKFTADAVKLLAHCKA 67
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ + ++GLP+N++G+EGPR STRAFV ++ +P FWDERL+T +A+++L++
Sbjct: 68 QGVGGLVVGLPVNLDGTEGPRAQSTRAFVRSL-GALTDMPMAFWDERLSTAAAERVLLEA 126
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ SRK+R + +D +AAA ILQ LDR+++
Sbjct: 127 DASRKRRAEVIDKMAAAYILQGALDRVNY 155
>gi|294677840|ref|YP_003578455.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003]
gi|294476660|gb|ADE86048.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003]
Length = 159
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
++D +L +A +DLGTK IG+A+SD R A P + R+K + +L+ +
Sbjct: 6 MDDFAAALPRVGALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFSLDLADLMKTVAE 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
IA F++GLP+NM+GSEGPR STRAF N+ ++ +P FWDERL+TV+A++ +++
Sbjct: 66 RQIAGFVLGLPVNMDGSEGPRAQSTRAFARNL-EKLTPLPITFWDERLSTVAAERAMLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
++SRK+R + VD +AA ILQ LDR++ L + G
Sbjct: 125 DLSRKRRAELVDHVAAGFILQGALDRLAHLGRAHG 159
>gi|254485728|ref|ZP_05098933.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101]
gi|214042597|gb|EEB83235.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101]
Length = 161
Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I D +L P Q + +DLG K IG+A++D A P + RKK A L I
Sbjct: 6 ITDFAAALPPMQALIGLDLGEKTIGVAVTDSFLSVATPLETVRRKKFGLDAALLTQIIAD 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I I+GLP NM+GSEGPR STRAF N D+ V +P FWDERL+TV+A++ L++
Sbjct: 66 RRIGGVILGLPRNMDGSEGPRCQSTRAFARNF-DKLVDLPIGFWDERLSTVAAEKALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ SRK+R + +D +AA+ ILQ VLDR+S L + G
Sbjct: 125 DTSRKRRAEVIDHVAASYILQGVLDRLSVLRAKGG 159
>gi|254512444|ref|ZP_05124511.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
bacterium KLH11]
gi|221536155|gb|EEE39143.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
bacterium KLH11]
Length = 154
Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 1/151 (0%)
Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
+ ED +L P + +DLG K IG+A+SD R A P + RKK T + L+ +T
Sbjct: 5 VFEDFAAALPPMSALMGLDLGEKTIGVAVSDRMRGVATPLETVRRKKFTLDSARLIEIVT 64
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
I ++GLP NM+GSEGPR STRAF N+ R V FWDERL+TV+A++ L++
Sbjct: 65 DREIGGIVLGLPRNMDGSEGPRCQSTRAFARNLT-RLTEVQIGFWDERLSTVAAEKALLE 123
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ +RK+R Q +D +AA ILQ LDR+ FL
Sbjct: 124 ADTTRKRRGQVIDHVAAGYILQGALDRLRFL 154
>gi|85707211|ref|ZP_01038297.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217]
gi|85668265|gb|EAQ23140.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217]
Length = 160
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I +L + I +DLGTK IG+A+SD A P + R K T+ A L +T
Sbjct: 6 IAGFAGALPRGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTEDAARLFDIMTG 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
++ I+GLP NM+GSEGPR STRAF N+ R P +WDERL+TV+A++ L++
Sbjct: 66 RDVGGIILGLPRNMDGSEGPRAQSTRAFARNL-SRLTDAPIGYWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+ +RK+R+Q +D+IAAA ILQ VLDR+S + +
Sbjct: 125 DATRKRRMQVIDNIAAAYILQGVLDRMSHMRA 156
>gi|260428035|ref|ZP_05782014.1| conserved hypothetical protein [Citreicella sp. SE45]
gi|260422527|gb|EEX15778.1| conserved hypothetical protein [Citreicella sp. SE45]
Length = 157
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 97/153 (63%), Gaps = 1/153 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
IE+ L P + +A +DLGTK IG+A+SD A P + RKK TQ A L+ +
Sbjct: 6 IEEFAAILPPMRALAGLDLGTKTIGVALSDRLLTVATPLETVKRKKFTQDAARLVEILRQ 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
IA ++GLP NM+GSEGPR STRAF N + P FWDERL+TV+A++ L++
Sbjct: 66 REIAGVVLGLPRNMDGSEGPRCQSTRAFARNF-SQLWDGPITFWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ SR+KR + +D +AA+ ILQ VLDR+ L S+
Sbjct: 125 DTSRRKRAELIDHVAASYILQGVLDRLRNLRSA 157
>gi|56697209|ref|YP_167573.1| Holliday junction resolvase-like protein [Ruegeria pomeroyi DSS-3]
gi|62900907|sp|Q5LQY2|RUVX_SILPO RecName: Full=Putative Holliday junction resolvase
gi|56678946|gb|AAV95612.1| conserved hypothetical protein TIGR00250 [Ruegeria pomeroyi DSS-3]
Length = 154
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+E+ +L P +A +DLG K IG+A+SD R A P + RKK A LL+ +
Sbjct: 6 VEEFAAALPPFSALAGLDLGDKTIGVAVSDRMRGVATPLETIRRKKFGLDASALLAIVEQ 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
IA ++GLP NM+GSEGPR STRAF N+ R V FWDERL+TV+A++ L++
Sbjct: 66 REIAGIVLGLPRNMDGSEGPRCQSTRAFARNL-SRLTEVAITFWDERLSTVAAEKALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ +RK+R + +D +AAA ILQ LDR+ L
Sbjct: 125 DTTRKRRSEVIDHVAAAYILQGALDRLRNL 154
>gi|149202250|ref|ZP_01879223.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035]
gi|149144348|gb|EDM32379.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035]
Length = 160
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 94/152 (61%), Gaps = 1/152 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I +L + I +DLGTK IG+A+SD A P + R K T A LL +
Sbjct: 6 IAAFAAALPQGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTDDAARLLQIVAG 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ I+GLP NM+GSEGPR STRAF N+ R VP +WDERL+TV+A++ L++
Sbjct: 66 REVGGIILGLPRNMDGSEGPRAQSTRAFARNL-SRLTEVPIGYWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+ +RK+R+Q +D+IAAA ILQ VLDR+ + +
Sbjct: 125 DATRKRRMQVIDNIAAAYILQGVLDRMGHMRA 156
>gi|260433278|ref|ZP_05787249.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417106|gb|EEX10365.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 154
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
E+ +L P Q + +DLG K IG+A+SD R A P + RKK + LL T
Sbjct: 7 EEFAAALPPMQALMGLDLGEKTIGVAVSDRMRGVASPLETVRRKKFKLDSARLLEIATDR 66
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
I ++GLP NM+GSEGPR STRAF N+ + +P FWDERL+TV+A++ L++ +
Sbjct: 67 EIGGIVLGLPRNMDGSEGPRCQSTRAFARNL-SQLTDIPIGFWDERLSTVAAKKALLEAD 125
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFL 155
+RK+R Q +D +AA ILQ LDR+ FL
Sbjct: 126 TTRKRRGQVIDHVAAGYILQGALDRLRFL 154
>gi|182678862|ref|YP_001833008.1| Holliday junction resolvase-like protein [Beijerinckia indica
subsp. indica ATCC 9039]
gi|226725489|sp|B2IEC1|RUVX_BEII9 RecName: Full=Putative Holliday junction resolvase
gi|182634745|gb|ACB95519.1| Holliday junction resolvase YqgF [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 165
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L P Q + IDLGTK IGL++SD RR A P + R K T+ A LL+ ++AAF+
Sbjct: 15 LGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKDAERLLALADQFDVAAFV 74
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLPLNM+GS GPRV +T AFV ++ PF +WDERL+T + + LI + SR KR
Sbjct: 75 IGLPLNMDGSAGPRVQATEAFVRSL-SGLTSRPFCYWDERLSTAAVTRDLIAQDASRAKR 133
Query: 133 IQKVDSIAAALILQEVLDRISFLESS 158
VD +AAA ILQ LDR++++ +
Sbjct: 134 AAVVDKLAAAFILQGALDRLAWVHET 159
>gi|288958770|ref|YP_003449111.1| holliday junction resolvase [Azospirillum sp. B510]
gi|288911078|dbj|BAI72567.1| holliday junction resolvase [Azospirillum sp. B510]
Length = 178
Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 5/156 (3%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
I +EDL L NQ + +D+GTK +GLA++DPG A P L R K TQ A EL
Sbjct: 2 IHTLEDLAARLGRNQRLLGLDVGTKTVGLAVADPGLIVASPIGTLKRTKFTQDARELGKT 61
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF----VFWDERLTTVSA 118
I I ++GLPLNM+GSEGPR S RAF +N+++R + + FWDERL+T +
Sbjct: 62 IRDYGIGGLVVGLPLNMDGSEGPRAESVRAFANNLLERSDLLGWEAEIAFWDERLSTSAV 121
Query: 119 QQILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
++ +I + +++RK+R + VD +AAA ILQ LD ++
Sbjct: 122 ERFMIGEADMTRKRRDEVVDKMAAAYILQGALDMLA 157
>gi|254465560|ref|ZP_05078971.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
Y4I]
gi|206686468|gb|EDZ46950.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
Y4I]
Length = 157
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 1/154 (0%)
Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
+ ED +L P + +DLGTK IG+A+SD A P + RKK + A LL I
Sbjct: 5 VFEDFAAALPPMSALMGLDLGTKTIGVAVSDRIGAVATPLETVKRKKFSTDAARLLEIIQ 64
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
+I+ ++GLP NM+G+EGPR STRAF N++ + +P FWDERL+TV+A++ L++
Sbjct: 65 ARDISGILLGLPRNMDGTEGPRCQSTRAFARNLM-QLTDLPISFWDERLSTVAAEKALLE 123
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ +RK+R + +D +AA+ ILQ LDR+ L++
Sbjct: 124 ADTTRKRRAEVIDHVAASYILQGALDRMRHLKNG 157
>gi|114765456|ref|ZP_01444566.1| hypothetical protein 1100011001321_R2601_10219 [Pelagibaca
bermudensis HTCC2601]
gi|114542166|gb|EAU45197.1| hypothetical protein R2601_10219 [Roseovarius sp. HTCC2601]
Length = 158
Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
IED +L ++ +A +DLGTK IG+A+SD A P + RKK T A LL +
Sbjct: 6 IEDFAAALPRDRALAGLDLGTKTIGVAVSDRLLTVATPLETVKRKKFTLDAERLLEILVK 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I ++GLP NM+GSEGPR STRAF N R P FWDERL+TV+A++ L++
Sbjct: 66 REIGGVVLGLPRNMDGSEGPRCQSTRAFARNF-SRLWDGPVTFWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ SR KR + +D +AA+ ILQ LDR+ L ++
Sbjct: 125 DTSRAKRAELIDHVAASYILQGALDRLRHLRAN 157
>gi|323136211|ref|ZP_08071293.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242]
gi|322398285|gb|EFY00805.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242]
Length = 157
Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 96/151 (63%), Gaps = 3/151 (1%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
IE++ + L + +DLGTK IGLA+SD RR A P + R K +Q A LL
Sbjct: 8 IEEVARVLPAKGRLMGLDLGTKTIGLALSDVERRLASPLDTIKRVKFSQDAGALLQRAQD 67
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID 124
++ A + GLPLNM+G+ GPR +TRAF+ N+ RK+ +PFVFWDERL+T + + LI
Sbjct: 68 FDVQALVFGLPLNMDGTAGPRAQATRAFMRNL--RKLTPIPFVFWDERLSTAAVTRELIA 125
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ SR KR + VD +AAA ILQ LDR+S L
Sbjct: 126 QDASRAKRAEVVDRMAAAYILQGALDRLSRL 156
>gi|146277916|ref|YP_001168075.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
ATCC 17025]
gi|167012753|sp|A4WTQ6|RUVX_RHOS5 RecName: Full=Putative Holliday junction resolvase
gi|145556157|gb|ABP70770.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC
17025]
Length = 160
Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
IE+ + +L + + +DLGTK IG+A++D RR A P + R K T+ A L +
Sbjct: 6 IEEFLAALPRSGALIGLDLGTKTIGVAVTDGLRRIATPLLTIRRTKFTEDAARLRAITAE 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ ++GLP NM+GSEGPR STRAF N+ + + +P +WDERL+TV+A++ LI+
Sbjct: 66 RGLVGIVLGLPRNMDGSEGPRAQSTRAFARNL-SQVLPLPIGYWDERLSTVAAERALIEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ SRK+R + +D +AA ILQ VLDR+ +L
Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWL 154
>gi|254454337|ref|ZP_05067774.1| conserved hypothetical protein TIGR00250 [Octadecabacter
antarcticus 238]
gi|198268743|gb|EDY93013.1| conserved hypothetical protein TIGR00250 [Octadecabacter
antarcticus 238]
Length = 158
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 95/151 (62%), Gaps = 1/151 (0%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
D +L P+A +DLGTK IG+A+ D G A P + R K A L
Sbjct: 8 DFAAALPRYAPLAGLDLGTKTIGVAVCDGGLIIASPLETIKRSKFQADATRLFEITAHRE 67
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+A ++GLP NM+GSEGPR STRAF N+ R +P +WDERL+TV+A++ L++ +
Sbjct: 68 VAGIVLGLPRNMDGSEGPRAQSTRAFARNL-SRLSDLPITYWDERLSTVAAERALLEADT 126
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESS 158
SRK+R + +D+IAA++ILQ +LDR+ ++++
Sbjct: 127 SRKRRAEVIDNIAASIILQGLLDRLRNIKAA 157
>gi|126729458|ref|ZP_01745272.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37]
gi|126710448|gb|EBA09500.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37]
Length = 156
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 93/151 (61%), Gaps = 3/151 (1%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
IE +L P Q + +DLGTK IG+A+SD R A P + RKK A L + I
Sbjct: 6 IEGFAAALPPMQALMGLDLGTKTIGVAVSDGLRSVATPLETVKRKKFGVDAERLQALIAG 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID 124
I I+GLP NM+G+EGPR STRAF N ++ P +WDERL+TV+A++ L++
Sbjct: 66 RRIGGLILGLPRNMDGTEGPRCQSTRAFARNFA--ALWDGPIGYWDERLSTVAAEKALLE 123
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ +RK+R + +D +AA+ ILQ LDR+ FL
Sbjct: 124 ADTTRKRRAEVIDHVAASYILQGALDRLRFL 154
>gi|296445897|ref|ZP_06887848.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b]
gi|296256565|gb|EFH03641.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b]
Length = 160
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+E+L L + +D+GTK IGLA+SD RR A P + R K T A L + +
Sbjct: 8 VEELAALLPAKGRLMGLDVGTKTIGLALSDVERRLASPLETIRRGKFTSDAERLGALVAQ 67
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+IAA I+GLPLNM+GSEGPR +TRAF+ N+ R + + FWDERL+T + + L+
Sbjct: 68 FDIAALIVGLPLNMDGSEGPRAQATRAFMRNLGAR-FALRYAFWDERLSTAAVTRELLAQ 126
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+ SR KR VD +AAA ILQ LDR+ L S
Sbjct: 127 DASRAKRAAVVDRMAAAYILQGALDRLRRLAS 158
>gi|92117802|ref|YP_577531.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14]
gi|91800696|gb|ABE63071.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14]
Length = 168
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +DLGTK IG+A+SDP RR A L RK T A LL+ N A F++GLP+N
Sbjct: 26 LVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTADAARLLAIAGERNAAGFVLGLPIN 85
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSEGPR STRAF N+ R + WDERL+TV+ ++ LI M++SR KR + +D
Sbjct: 86 MDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTVAVERELIGMDMSRAKRAKVIDE 144
Query: 139 IAAALILQEVLDRISFL 155
AA ILQ LDR++ L
Sbjct: 145 HAAIFILQGALDRLAVL 161
>gi|89068321|ref|ZP_01155731.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516]
gi|89046238|gb|EAR52296.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516]
Length = 157
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
ED +L + + +DLGT+ IG+A+SD R A P + RKK A LL+
Sbjct: 7 EDFAAALPDHGALVGLDLGTRTIGVAVSDGLRAVATPLQTIARKKFGVDAAALLAICEHR 66
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
I ++GLP NM+GSEGPR STR F N+ +R +P FWDERL+TV+A++ L++ +
Sbjct: 67 AITGIVLGLPRNMDGSEGPRCQSTRGFARNL-ERLTPLPIAFWDERLSTVAAERALLEAD 125
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFL 155
SR++R + +D +AA +ILQ +LDR+ L
Sbjct: 126 TSRRRRGEVIDHVAAGVILQGMLDRLRHL 154
>gi|118597217|sp|Q1QL26|RUVX_NITHX RecName: Full=Putative Holliday junction resolvase
Length = 163
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +DLGTK IG+A+SDP RR A L RK T A LL+ N A F++GLP+N
Sbjct: 21 LVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTADAARLLAIAGERNAAGFVLGLPIN 80
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSEGPR STRAF N+ R + WDERL+TV+ ++ LI M++SR KR + +D
Sbjct: 81 MDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTVAVERELIGMDMSRAKRAKVIDE 139
Query: 139 IAAALILQEVLDRISFL 155
AA ILQ LDR++ L
Sbjct: 140 HAAIFILQGALDRLAVL 156
>gi|163746885|ref|ZP_02154242.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45]
gi|161379999|gb|EDQ04411.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45]
Length = 157
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
D + +L P Q + +DLG K IG+A+SD + A P + RKK A L I
Sbjct: 8 DFLAALPPMQALIGLDLGEKTIGVAVSDSFQSVATPLETVRRKKFGLDAARLAEIIAKRR 67
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I ++GLP NM+GSEGPR STRAF N DR +P +WDERL+TV+A++ L++ +
Sbjct: 68 IGGLVLGLPRNMDGSEGPRCQSTRAFARN-FDRLTPLPITYWDERLSTVAAERALLEADT 126
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFL 155
+RK+R + +D +AA ILQ +LDR+ +
Sbjct: 127 TRKRRAEVIDHVAAGYILQGLLDRLQVM 154
>gi|126725473|ref|ZP_01741315.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium
HTCC2150]
gi|126704677|gb|EBA03768.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium
HTCC2150]
Length = 156
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 4/154 (2%)
Query: 5 LIEDLVK---SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
+IED V+ SLK PI ++D G K IG+A SD R A P + R K T A LL
Sbjct: 3 IIEDFVEFGSSLKEMSPIFALDFGDKTIGIATSDIFRNIATPLETIRRTKFTADAERLLE 62
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ F++GLP NM+GSEG R TRAF N+ +R + FWDERL+TV+A++
Sbjct: 63 LAKQRQVTGFVLGLPRNMDGSEGVRCQKTRAFARNL-ERLTEINIAFWDERLSTVAAERA 121
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
LI+ + SR KR Q +D +AA ILQ LDR++ L
Sbjct: 122 LIEADTSRAKRAQIIDHVAAGYILQGALDRLAHL 155
>gi|126736029|ref|ZP_01751773.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2]
gi|126714586|gb|EBA11453.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2]
Length = 158
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
E V ++ +A +DLGT IG+A+SD R A P + RKK A +LL T
Sbjct: 7 ETFVAAIPDRGALAGLDLGTVTIGVAVSDVLRSVATPLETIKRKKFGVDAAKLLELTTHR 66
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
+ ++GLP NM+GSEGPR +TRAF N+ ++ +P FWDERL+TV+A++ L++ +
Sbjct: 67 LVTGLVLGLPRNMDGSEGPRCQATRAFARNL-EKLTPLPITFWDERLSTVAAERALLEAD 125
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
SRK+R + +D +AA ILQ +LDR++ L+++
Sbjct: 126 TSRKRRAEVIDHVAAGYILQGMLDRMAHLKAT 157
>gi|27380205|ref|NP_771734.1| Holliday junction resolvase-like protein [Bradyrhizobium japonicum
USDA 110]
gi|27353359|dbj|BAC50359.1| blr5094 [Bradyrhizobium japonicum USDA 110]
Length = 167
Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
IL + D + +DLGTK IG+A+S+P RR A + RK Q A LL+
Sbjct: 11 ILPLVDAATHWPERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAI 70
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ F++GLP+NM+GSEGPR STRAF N+ + +P WDERL+T + ++ L
Sbjct: 71 AAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTTLPIGLWDERLSTAAVEREL 129
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
I M+VSR KR + +D AA ILQ LDR++ L + G
Sbjct: 130 IGMDVSRAKRAEVIDEHAAIFILQGALDRLANLRTGNG 167
>gi|83943004|ref|ZP_00955464.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36]
gi|83846012|gb|EAP83889.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36]
Length = 161
Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I D +L P Q + +DLG K IG+A+SD A P + RKK A L I
Sbjct: 6 ITDFAAALPPMQALIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVDAARLSEIIAA 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I ++GLP NM+GSEG R STRAF N DR +P FWDERL+TV+A++ L++
Sbjct: 66 RGIGGVVLGLPRNMDGSEGARCQSTRAFARNF-DRLGDIPIGFWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+ SR++R + +D +AA ILQ VLDR+ +++
Sbjct: 125 DTSRRRRAEVIDHVAAGYILQGVLDRLRVIKA 156
>gi|32130021|sp|Q89K24|RUVX_BRAJA RecName: Full=Putative Holliday junction resolvase
Length = 161
Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
IL + D + +DLGTK IG+A+S+P RR A + RK Q A LL+
Sbjct: 5 ILPLVDAATHWPERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAI 64
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ F++GLP+NM+GSEGPR STRAF N+ + +P WDERL+T + ++ L
Sbjct: 65 AAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTTLPIGLWDERLSTAAVEREL 123
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
I M+VSR KR + +D AA ILQ LDR++ L + G
Sbjct: 124 IGMDVSRAKRAEVIDEHAAIFILQGALDRLANLRTGNG 161
>gi|83954179|ref|ZP_00962899.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1]
gi|83841216|gb|EAP80386.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1]
Length = 161
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I D +L P Q + +DLG K IG+A+SD A P + RKK A L I
Sbjct: 6 ITDFAAALPPMQALIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVDATRLSEIIAA 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I ++GLP NM+GSEG R STRAF N DR +P FWDERL+TV+A++ L++
Sbjct: 66 RGIGGVVLGLPRNMDGSEGARCQSTRAFARNF-DRLGDIPIGFWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+ SR++R + +D +AA ILQ VLDR+ +++
Sbjct: 125 DTSRRRRAEVIDHVAAGYILQGVLDRLRVIKA 156
>gi|86749549|ref|YP_486045.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2]
gi|146325600|sp|Q2IXC6|RUVX_RHOP2 RecName: Full=Putative Holliday junction resolvase
gi|86572577|gb|ABD07134.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2]
Length = 160
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLGTK IG+A+SDP RR A + RK T A LL+ N F++GLPLNM+
Sbjct: 23 GLDLGTKTIGVAVSDPDRRLATGIETVARKAFTADAQRLLALAAGRNACGFVLGLPLNMD 82
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPRV STRAF N R +P WDERL+T + ++ LI +VSR KR + +D A
Sbjct: 83 GSEGPRVQSTRAFARNFA-RLTELPIGLWDERLSTAAVERELIANDVSRAKRAKIIDEHA 141
Query: 141 AALILQEVLDRISFL 155
A ILQ LDR++ L
Sbjct: 142 AIYILQGALDRLATL 156
>gi|115525369|ref|YP_782280.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
BisA53]
gi|122295574|sp|Q07L84|RUVX_RHOP5 RecName: Full=Putative Holliday junction resolvase
gi|115519316|gb|ABJ07300.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
BisA53]
Length = 163
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + +DLGTK IG+A+SDP RR A ++RK T A LL+ T ++G
Sbjct: 17 PTGALIGLDLGTKTIGVAVSDPARRLATGVETILRKTFTTDAARLLALATERKAVGLVLG 76
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP+NM+ SEGPR STRAF N+ R +P WDERL+T + ++ LI +VSR KR +
Sbjct: 77 LPINMDASEGPRAQSTRAFARNLA-RLTELPIGLWDERLSTAAVERELIANDVSRAKRAK 135
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA ILQ LDR++ L S G
Sbjct: 136 VIDEHAAIFILQGALDRLAVLNRSTG 161
>gi|254420883|ref|ZP_05034607.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3]
gi|196187060|gb|EDX82036.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3]
Length = 159
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L + DL + P+ P +DLG K IG+A+SD R A P + + K T A +L
Sbjct: 1 MPVLDLLDLPAACPPDTPWMGLDLGEKTIGVAVSDATRLIASPLELIRKSKFTLEADQLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ ++A +IGLP NM+G+EGPR S RAF N+ +R V FWDERL+T + ++
Sbjct: 61 KLMAHRKVSALVIGLPANMDGTEGPRAQSCRAFARNL-ERLRPVNIAFWDERLSTSAVER 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
LI D++++RK+R Q VD AAA ILQ LDR+
Sbjct: 120 FLIEDLDLNRKRRAQVVDRTAAAWILQGALDRV 152
>gi|84499203|ref|ZP_00997491.1| hypothetical protein OB2597_04730 [Oceanicola batsensis HTCC2597]
gi|84392347|gb|EAQ04558.1| hypothetical protein OB2597_04730 [Oceanicola batsensis HTCC2597]
Length = 161
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 2/155 (1%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+E+ +L P + IA +D G K IG+A+SD A P + R+K Q A L + +
Sbjct: 6 VEEFAAALPPMRAIAGLDFGDKTIGVAVSDTFLSVATPLETIRRRKFGQDADALSALLAA 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILI 123
I ++GLP NM+GSEGPR STRAF N+ R + +P FWDERL+TV+A++ L+
Sbjct: 66 RTIGGLVLGLPRNMDGSEGPRCQSTRAFARNLARRPDFADLPLTFWDERLSTVAAERALL 125
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ + SR++R + +D +AA ILQ LDR+ L+ +
Sbjct: 126 EADTSRRRRAEVIDHVAAGYILQGALDRLRHLKGA 160
>gi|259418877|ref|ZP_05742794.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
gi|259345099|gb|EEW56953.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
Length = 157
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
ED +L + +D G K IG+A+SD A P + RKK T + LL I+
Sbjct: 7 EDFAATLPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIISGR 66
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
+I I+GLP NM+GSEGPR STRAF N+ R +P FWDERL+TV+A++ L++ +
Sbjct: 67 DINGIILGLPRNMDGSEGPRCQSTRAFARNL-SRVTDLPIGFWDERLSTVAAERALLEAD 125
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
SRK+R + +D +AA+ ILQ LDR+ ++S
Sbjct: 126 TSRKRRAEVIDHVAASYILQGALDRLRHIKSG 157
>gi|163734012|ref|ZP_02141453.1| hypothetical protein RLO149_03699 [Roseobacter litoralis Och 149]
gi|161392548|gb|EDQ16876.1| hypothetical protein RLO149_03699 [Roseobacter litoralis Och 149]
Length = 163
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 96/154 (62%), Gaps = 3/154 (1%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
D + +L P + + +DLGT+ IG+A+SD A P + R+K T A L+ +
Sbjct: 8 DFLAALAPMRSLMGLDLGTQTIGVAVSDTFLSVATPLETIKRRKFTLDAARLVEIASERR 67
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDM 125
+ ++GLP NM+GSEGPR STRAF N+ ++ + +P FWDERL+TV+A++ L++
Sbjct: 68 LGGLVLGLPRNMDGSEGPRCQSTRAFARNL-EKTIGSDLPITFWDERLSTVAAERALLEA 126
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+ SRK+R + +D +AA ILQ LDRI + + +
Sbjct: 127 DTSRKRRAEVIDHVAAGYILQGALDRIRVIRAEQ 160
>gi|146341407|ref|YP_001206455.1| Holliday junction resolvase-like protein [Bradyrhizobium sp.
ORS278]
gi|167012698|sp|A4YWF9|RUVX_BRASO RecName: Full=Putative Holliday junction resolvase
gi|146194213|emb|CAL78235.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS278]
Length = 161
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +DLGTK IG+A+SDP RR A + RK A LL+ + F++GLP+N
Sbjct: 21 LVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLAICAERKVVGFVLGLPIN 80
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSEGPR STRAF N+ +P WDERL+T + ++ LI M+VSR KR + +D+
Sbjct: 81 MDGSEGPRAQSTRAFARNLAG-LTDLPIGLWDERLSTAAVERELIGMDVSRAKRAEVIDT 139
Query: 139 IAAALILQEVLDRISFLESS 158
AA ILQ LDR++ L S
Sbjct: 140 HAAIFILQGALDRLTTLRRS 159
>gi|99080808|ref|YP_612962.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040]
gi|124107444|sp|Q1GI16|RUVX_SILST RecName: Full=Putative Holliday junction resolvase
gi|99037088|gb|ABF63700.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040]
Length = 157
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
ED +L + +D G K IG+A+SD A P + RKK T + LL I
Sbjct: 7 EDFAAALPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIIAGR 66
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
+I ++GLP NM+GSEGPR STRAF N+ R +P FWDERL+TV+A++ L++ +
Sbjct: 67 DINGILLGLPRNMDGSEGPRCQSTRAFARNL-SRVTDLPIGFWDERLSTVAAERALLEAD 125
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
SRK+R + +D +AA+ ILQ LDR+ + SS
Sbjct: 126 TSRKRRAEVIDHVAASYILQGALDRMRHIRSS 157
>gi|209964820|ref|YP_002297735.1| hypothetical protein RC1_1518 [Rhodospirillum centenum SW]
gi|226731644|sp|B6IN25|RUVX_RHOCS RecName: Full=Putative Holliday junction resolvase
gi|209958286|gb|ACI98922.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 188
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 99/164 (60%), Gaps = 4/164 (2%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I + +L SL N + +DLG K IGLA+SDPG A P + R K TQ A EL
Sbjct: 1 MAIRNLMELKASLPRNGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQDAQELA 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF----VFWDERLTTV 116
+ ++ A ++GLP+NM+G+EGPR S R F ++ R F FWDERL+T
Sbjct: 61 RAMRDRDVRALVVGLPVNMDGTEGPRCQSVREFSRLLLQRPQLFGFEPEIAFWDERLSTS 120
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ ++++I +++RK+R + VD +AAA ILQ LDR+ +++ G
Sbjct: 121 AVERMMIGWDMTRKRRDEVVDKMAAAYILQGALDRLRQGDAAPG 164
>gi|86138500|ref|ZP_01057074.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193]
gi|85825025|gb|EAQ45226.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193]
Length = 157
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 90/153 (58%), Gaps = 1/153 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
ED +L +A +D G K +G+AISD A P + RKK T A L +
Sbjct: 6 FEDFAAALPGFTALAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDADHLFEIVKK 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I ++GLP NM+GSEGPR TRAF N+ R +P FWDERL+TV+A++ L++
Sbjct: 66 REIGGLVLGLPRNMDGSEGPRCQKTRAFARNL-SRLTELPIGFWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ SRK+R + +D +AA+ ILQ LDR+ L++
Sbjct: 125 DTSRKRRAELIDHVAASYILQGALDRMRHLKND 157
>gi|110679064|ref|YP_682071.1| hypothetical protein RD1_1766 [Roseobacter denitrificans OCh 114]
gi|118597221|sp|Q169F8|RUVX_ROSDO RecName: Full=Putative Holliday junction resolvase
gi|109455180|gb|ABG31385.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 163
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 3/154 (1%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
D + +L + + +DLGT+ IG+A+SD A P + R+K T A L +
Sbjct: 8 DFLAALPSMRSLMGLDLGTQTIGVAVSDTFLSVATPLETVKRRKFTLDAARLSDIVAQRR 67
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDM 125
+ ++GLP NM+GSEGPR STRAF N+ D+ + +P FWDERL+TV+A++ L++
Sbjct: 68 LGGLVLGLPRNMDGSEGPRCQSTRAFARNL-DKSIGSDLPITFWDERLSTVAAERALLEA 126
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+ SRK+R + +D +AAA ILQ LDRI + + +
Sbjct: 127 DTSRKRRAEVIDHVAAAYILQGALDRIRVIRAEQ 160
>gi|154253281|ref|YP_001414105.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans
DS-1]
gi|154157231|gb|ABS64448.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans
DS-1]
Length = 182
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 91/147 (61%), Gaps = 1/147 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+ +L L N+ + +DLG+K IGLA+SD A P + R K T A L++
Sbjct: 34 LAELKVGLGRNRRLIGVDLGSKTIGLALSDVSLSIASPLETIRRTKFTADAERLIALAKE 93
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ A + GLPLNM+G+EGPR STRAF+ N+ ++ +P FWDERL+T++ + L+D
Sbjct: 94 HDAGALVFGLPLNMDGTEGPRCQSTRAFIRNL-EKLTDLPIAFWDERLSTMAVTRTLLDA 152
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152
+ SR +R + VD +AAA ILQ LDR+
Sbjct: 153 DASRARRAELVDKMAAAYILQGALDRL 179
>gi|158424464|ref|YP_001525756.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571]
gi|158331353|dbj|BAF88838.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571]
Length = 185
Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+ ++ +L + +DLGTK IG+A DP RR A + R K TQ A L+ +
Sbjct: 35 LAEIAAALPERGSLLGLDLGTKTIGVATCDPDRRLATVVETVKRTKFTQDAERLMVLASE 94
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
AF++GLPLNM+GSEGPRV ++RAF N R +P FWDERL+TV+ ++ LI
Sbjct: 95 RKAVAFVLGLPLNMDGSEGPRVQASRAFARNFA-RLSGLPIAFWDERLSTVAVERALISA 153
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
+VSR KR +D AAA ILQ +D
Sbjct: 154 DVSRAKRANVIDQHAAAFILQGAID 178
>gi|148256069|ref|YP_001240654.1| Holliday junction resolvase-like protein [Bradyrhizobium sp. BTAi1]
gi|167012697|sp|A5EKQ4|RUVX_BRASB RecName: Full=Putative Holliday junction resolvase
gi|146408242|gb|ABQ36748.1| putative Holliday junction resolvase [Bradyrhizobium sp. BTAi1]
Length = 161
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 88/140 (62%), Gaps = 1/140 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +DLGTK IG+A+SDP RR A + RK A LL+ + + F++GLP+N
Sbjct: 21 LVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLAISSERKVVGFVLGLPIN 80
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSEGPR STRAF N+ + +P WDERL+T + ++ LI M+VSR +R + +D+
Sbjct: 81 MDGSEGPRAQSTRAFARNLAN-LTDLPIGLWDERLSTAAVERELIGMDVSRARRAEVIDT 139
Query: 139 IAAALILQEVLDRISFLESS 158
AA ILQ LDR++ L S
Sbjct: 140 HAAIFILQGALDRLATLRRS 159
>gi|255261332|ref|ZP_05340674.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
gi|255103667|gb|EET46341.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
Length = 158
Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I + ++ +A +DLGT IG+A+SD A P + RKK + A LL
Sbjct: 6 ITEFAAAVPQMSALAGLDLGTVTIGVAVSDRFLSVATPLETIRRKKFSLDAARLLEIAKD 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ ++GLP NM+GSEGPR STRAF N+ ++ +P FWDERL+TV+A++ L++
Sbjct: 66 RELGGLVLGLPYNMDGSEGPRCQSTRAFARNL-EKLTDLPISFWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ +RK+R + +D +AA ILQ VLDR + L +S
Sbjct: 125 DTTRKRRAEVIDHVAAGYILQGVLDRFAHLRAS 157
>gi|83952340|ref|ZP_00961071.1| putative endonuclease involved in recombination [Roseovarius
nubinhibens ISM]
gi|83836013|gb|EAP75311.1| putative endonuclease involved in recombination [Roseovarius
nubinhibens ISM]
Length = 158
Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 5/158 (3%)
Query: 5 LIEDLVKSLKPNQP----IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
+I D +S P + +DLGTK +G+A+SD R A P + R+K T A L
Sbjct: 1 MIHDAFESFAEGLPAMGALMGLDLGTKTVGVAVSDGMRGVATPLETVKRQKFTLDAARLQ 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I ++ ++GLP NM+GSEGPR STRAF N + +P FWDERL+TV+A++
Sbjct: 61 ELIAARSVVGVVLGLPRNMDGSEGPRCQSTRAFARNFA-QLTDLPIGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SRK+R + +D +AA+ ILQ LDR+ + S
Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGALDRLRHIGRS 157
>gi|254477517|ref|ZP_05090903.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11]
gi|214031760|gb|EEB72595.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11]
Length = 157
Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
PIA +D G K +G+AISD A P + RKK T A +L + I A ++GLP
Sbjct: 18 PIAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDAEKLFEIVKAREIGALLLGLPR 77
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+EGPR TRAF N+ + +P FWDERL+TV+A++ L++ + SRK+R + +D
Sbjct: 78 NMDGTEGPRCQKTRAFARNL-SQLTDLPIGFWDERLSTVAAERALLEADTSRKRRSEVID 136
Query: 138 SIAAALILQEVLDRISFLESS 158
+AA+ ILQ LDR+ L++
Sbjct: 137 HVAASYILQGALDRMRHLKTG 157
>gi|114771780|ref|ZP_01449173.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255]
gi|114547596|gb|EAU50487.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255]
Length = 156
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
+ L + + +DLGTK IG+A+SD A PR + RKK L + + +
Sbjct: 9 EFASELTKFKSLIGLDLGTKTIGIAVSDTLWTVATPRETIKRKKFGIDCDALQTVFNSTD 68
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I+GLP+NM+GSEGPR +TRAF N+ R +P FWDERL++V+A++ +++ ++
Sbjct: 69 TGGIILGLPMNMDGSEGPRCQATRAFARNLSSR-CDIPITFWDERLSSVAAERAMLEADM 127
Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
SR KR +D +AA+ ILQ LDRI
Sbjct: 128 SRAKRADNIDHVAASFILQGALDRIG 153
>gi|126739041|ref|ZP_01754735.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6]
gi|126719658|gb|EBA16366.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6]
Length = 157
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 1/153 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
IE+ +++ +A +D G K IG+AISD A P + RKK T A L
Sbjct: 6 IEEFAQAVPGFTALAGLDFGEKTIGIAISDRIGAVATPLETIRRKKFTLDAERLFEITKA 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I ++GLP NM+GSEGPR TRAF N+ ++ +P FWDERL+TV+A++ L++
Sbjct: 66 REIGGLVLGLPRNMDGSEGPRCQKTRAFARNL-EKLTELPITFWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ SRK+R + +D +AA+ ILQ LDR+ ++
Sbjct: 125 DTSRKRRAEVIDHVAASYILQGALDRMRHMKDG 157
>gi|163739973|ref|ZP_02147378.1| Holliday junction resolvase YqgF [Phaeobacter gallaeciensis BS107]
gi|163743191|ref|ZP_02150573.1| hypothetical protein RG210_14860 [Phaeobacter gallaeciensis 2.10]
gi|161383608|gb|EDQ07995.1| hypothetical protein RG210_14860 [Phaeobacter gallaeciensis 2.10]
gi|161386718|gb|EDQ11082.1| Holliday junction resolvase YqgF [Phaeobacter gallaeciensis BS107]
Length = 157
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 90/145 (62%), Gaps = 2/145 (1%)
Query: 15 PN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
PN PIA +D G K +G+AISD A P + RKK T A L + + A ++
Sbjct: 14 PNFTPIAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDAARLFEIVKDREVGALLL 73
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NM+G+EGPR TRAF N+ + +P FWDERL+TV+A++ L++ + SRK+R
Sbjct: 74 GLPRNMDGTEGPRCQKTRAFARNLA-KLTELPIGFWDERLSTVAAERALLEADTSRKRRA 132
Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
+ +D +AA+ ILQ LDR+ +++
Sbjct: 133 EVIDHVAASYILQGALDRMRHIKAG 157
>gi|298291510|ref|YP_003693449.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506]
gi|296928021|gb|ADH88830.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506]
Length = 160
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
IL + + L + +DLGTK IG+A SDP RR A + RK+ T A +LS
Sbjct: 5 ILPVAEAAGILPARGSLIGLDLGTKTIGVASSDPDRRIAAGVETIARKQFTPDAGRVLSL 64
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
++GLP+NM+GSEGPR ++RAF N+ R +P + WDERL+T + ++ +
Sbjct: 65 AAARGAVGLVLGLPVNMDGSEGPRAQASRAFARNL-SRLTELPIMLWDERLSTAAVERDM 123
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
I ++SR +R + VD AAA ILQ LDR+ F+ +
Sbjct: 124 IATDMSRARRAEVVDQQAAAFILQGALDRLRFIAEGR 160
>gi|329889392|ref|ZP_08267735.1| conserved hypothetical UPF0081 family protein [Brevundimonas
diminuta ATCC 11568]
gi|328844693|gb|EGF94257.1| conserved hypothetical UPF0081 family protein [Brevundimonas
diminuta ATCC 11568]
Length = 154
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L + +L + PN P +DLG IG+++SD GR A P + + K +Q A +L
Sbjct: 1 MPVLDLSELPAACPPNTPWLGLDLGENTIGVSVSDTGRIIASPLELIRKTKFSQDAEQLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ ++A +IGLPLNM+G+EGPR S RAF N+ +R V F DERL+T + ++
Sbjct: 61 RIMDGRKVSALVIGLPLNMDGTEGPRAQSCRAFARNL-ERFRPVNVAFQDERLSTTAVER 119
Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152
LID ++++RK+R VD AAA ILQ LDR+
Sbjct: 120 FLIDELDLTRKRRADVVDRTAAAWILQGALDRL 152
>gi|118597214|sp|Q2W6Y3|RUVX_MAGMM RecName: Full=Putative Holliday junction resolvase
Length = 155
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K TQ A LL
Sbjct: 1 MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + + ++GLP+ M+G EGPR S R+F N+ R +P +WDERL+T + +
Sbjct: 61 AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAANLA-RLRDMPIAYWDERLSTSAVTR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L++ + SRK+R + VD +AAA ILQ +LD
Sbjct: 120 TLLEADSSRKRRAEVVDKMAAAYILQGLLD 149
>gi|83310687|ref|YP_420951.1| putative Holliday junction resolvase [Magnetospirillum magneticum
AMB-1]
gi|82945528|dbj|BAE50392.1| Putative Holliday junction resolvase [Magnetospirillum magneticum
AMB-1]
Length = 159
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K TQ A LL
Sbjct: 5 MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL 64
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + + ++GLP+ M+G EGPR S R+F N+ R +P +WDERL+T + +
Sbjct: 65 AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAANLA-RLRDMPIAYWDERLSTSAVTR 123
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L++ + SRK+R + VD +AAA ILQ +LD
Sbjct: 124 TLLEADSSRKRRAEVVDKMAAAYILQGLLD 153
>gi|209884927|ref|YP_002288784.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5]
gi|209873123|gb|ACI92919.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5]
Length = 204
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
IL + D P + +DLGTK IG+A+SDP RR A + RK T+ A ELL
Sbjct: 47 ILPLIDAAALWAPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKNFTKDAAELLKI 106
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
A F++GLP+NM+GSEGPR STRAF N + + WDERL+T + ++ L
Sbjct: 107 SGERACAGFVLGLPINMDGSEGPRAQSTRAFARNFA-KLTELAIGLWDERLSTAAVEREL 165
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ +VSR +R + +D AA ILQ LDR++ L
Sbjct: 166 LANDVSRARRAEVIDEHAAIFILQGALDRLTAL 198
>gi|326386640|ref|ZP_08208262.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens
DSM 19370]
gi|326208955|gb|EGD59750.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens
DSM 19370]
Length = 155
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 2/148 (1%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I + +L + +D GTK IG+A+ D G RFA P L R+K Q E++ I
Sbjct: 6 IGEFRAALSEGGVLMGLDPGTKTIGIALCDAGWRFASPSHTLNRRKFAQDKAEIVGIIAQ 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
++ +IGLPLNM+GSE PR + RA N+ D + +P + WDER TT +A++ +I
Sbjct: 66 RSVRGIVIGLPLNMDGSESPRSQAARAMARNLAD--LALPTLLWDERWTTQAAERAMIAQ 123
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
++SR KR +++D+ AAALILQ +D ++
Sbjct: 124 DMSRAKRAERIDAHAAALILQGAIDALA 151
>gi|85373365|ref|YP_457427.1| Holliday junction resolvase-like protein [Erythrobacter litoralis
HTCC2594]
gi|84786448|gb|ABC62630.1| hypothetical protein ELI_02690 [Erythrobacter litoralis HTCC2594]
Length = 167
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++DLGTK IG A SD G RFA L R + + +L +++ N+A ++GLP NM+
Sbjct: 27 ALDLGTKTIGTATSDAGWRFATAGKTLPRGRFGKDKAKLQEIVSSRNVAGLVLGLPRNMD 86
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPR ++RA+ N+ + +P + WDER +T SA+ +I ++SR KR +K+DS A
Sbjct: 87 GSEGPRAQASRAYARNLAE-AFGLPVLLWDERWSTQSAESAMIGQDMSRAKRAEKIDSHA 145
Query: 141 AALILQEVLDRIS 153
AA+ LQ LD ++
Sbjct: 146 AAIFLQAALDTLA 158
>gi|23015713|ref|ZP_00055482.1| COG0816: Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Magnetospirillum magnetotacticum MS-1]
Length = 159
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K T+ A +LL
Sbjct: 5 MPILSPVELLGSLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTKDAEQLL 64
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +++ ++GLP+ M+G EGPR S R+F N+ R +P +WDERL+T + +
Sbjct: 65 AIVDKQDVGGLVLGLPVEMDGFEGPRCQSVRSFAANLA-RLRDMPIAYWDERLSTSAVTR 123
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L++ + SRK+R + VD +AAA ILQ +LD
Sbjct: 124 TLLEADSSRKRRAEVVDKMAAAYILQGLLD 153
>gi|103486415|ref|YP_615976.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256]
gi|124107445|sp|Q1GUM9|RUVX_SPHAL RecName: Full=Putative Holliday junction resolvase
gi|98976492|gb|ABF52643.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256]
Length = 152
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
D +L +A +D+GTK IG+A+ D G FA P +VRK+ + L + + +
Sbjct: 8 DFAAALPNGGRLAGLDVGTKTIGVALCDAGWSFASPDKTIVRKRFSADLDALKALVAGQA 67
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+ ++GLPLNM+GS+ PR STRAF N+ + +P + WDER +T + ++ +I +V
Sbjct: 68 VVGLVVGLPLNMDGSDSPRTQSTRAFARNLA--PLGLPVLLWDERWSTAAVERAMIAADV 125
Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
SR KR +++DS AAA ILQ +D ++
Sbjct: 126 SRAKRAERIDSAAAAFILQGAIDAMT 151
>gi|299135137|ref|ZP_07028328.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2]
gi|298590114|gb|EFI50318.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2]
Length = 165
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
IL + + P + +DLGTK IG+A+SDP RR A + RK T+ A ELL
Sbjct: 10 ILPLTEAATHWTPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKTFTKDAAELLRI 69
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ F++GLP+NM+GSEGPR STRAF N + + WDERL+T + ++ L
Sbjct: 70 AGERASSGFVLGLPINMDGSEGPRAQSTRAFARNF-SKLTDLAIGLWDERLSTAAVEREL 128
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
I +VSR +R + +D AA ILQ LDR++ L
Sbjct: 129 IANDVSRARRAEVIDEHAAIFILQGALDRLAAL 161
>gi|170746909|ref|YP_001753169.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans
JCM 2831]
gi|170653431|gb|ACB22486.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans
JCM 2831]
Length = 170
Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
IDLGTK IGLA+SD GR+ A P + R K T A L + + ++GLPLNM+
Sbjct: 21 GIDLGTKTIGLALSDLGRQIATPLETIRRVKFTPDAQRLAALCRQHAVGGLVVGLPLNMD 80
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPRV STRAF+ N+ + +P VF+DERL+T + LI+ + SR +R Q VD +A
Sbjct: 81 GSEGPRVQSTRAFMRNLAP-ILPLPHVFFDERLSTAVVTRALIEADASRARRGQLVDKLA 139
Query: 141 AALILQEVLD 150
AA ILQ LD
Sbjct: 140 AAYILQGCLD 149
>gi|302382947|ref|YP_003818770.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC
15264]
gi|302193575|gb|ADL01147.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC
15264]
Length = 173
Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 89/151 (58%), Gaps = 2/151 (1%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
+L + DL + P+ +DLG IG+A SD R A P + + K T A L
Sbjct: 11 VLNLTDLAAACPPDTAWMGLDLGETTIGVATSDTSRMIASPLELIRKSKFTAEAHALFRL 70
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ ++A +IGLP+NM+G+EGPR S RAF N+ DR V FWDERL+T + ++ L
Sbjct: 71 MDHRKVSALVIGLPVNMDGTEGPRAQSCRAFARNL-DRIRPVNVAFWDERLSTSAVERFL 129
Query: 123 ID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152
ID +++SRK+R VD AAA ILQ LDR+
Sbjct: 130 IDELDLSRKRRAGVVDRTAAAWILQGALDRV 160
>gi|197104788|ref|YP_002130165.1| putative Holliday junction resolvase [Phenylobacterium zucineum
HLK1]
gi|226731635|sp|B4R966|RUVX_PHEZH RecName: Full=Putative Holliday junction resolvase
gi|196478208|gb|ACG77736.1| putative Holliday junction resolvase [Phenylobacterium zucineum
HLK1]
Length = 156
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ + DL PN P+ +DLG K IG+A+SD R A P + + K T A L
Sbjct: 1 MAVVDLIDLPAIAPPNTPLVGLDLGEKTIGVAVSDATRMVASPLGLIRKTKFTDDAKALF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLP+NM+G+EG R S RAF N++ + +P FWDER++T++ +
Sbjct: 61 KLMESRRASGIVIGLPVNMDGTEGTRCQSNRAFARNLLRLREDLPIAFWDERMSTMAVNR 120
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+L+ + +++R +R VD +AAA ILQ LDR+ L
Sbjct: 121 MLVGEADMTRARRADVVDKMAAAWILQGALDRLRNL 156
>gi|296284265|ref|ZP_06862263.1| Holliday junction resolvase-like protein [Citromicrobium
bathyomarinum JL354]
Length = 162
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 87/142 (61%), Gaps = 1/142 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
L ++L + +DLGTK IG+A+ D G RFA L R K + EL I +I
Sbjct: 14 LAETLPDGGALIGLDLGTKTIGIAVCDAGWRFASALKTLPRGKFGRDRDELRKLIEARSI 73
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+IGLP NM+GSEGPR ++RA+ N+ + +P + WDER +T SA+ +I ++VS
Sbjct: 74 RGIVIGLPRNMDGSEGPRAQASRAYARNLAE-AFGLPVLLWDERWSTKSAEDAMIGLDVS 132
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
R+KR +++D+ AA +ILQ +D
Sbjct: 133 RRKRAERIDAEAATIILQGAID 154
>gi|84684665|ref|ZP_01012565.1| hypothetical protein 1099457000245_RB2654_02114 [Maritimibacter
alkaliphilus HTCC2654]
gi|84667000|gb|EAQ13470.1| hypothetical protein RB2654_02114 [Rhodobacterales bacterium
HTCC2654]
Length = 155
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 86/138 (62%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPL 77
+A +D G K IG+A+SD R+ A P + R KK TQ A L++ + I+ ++GLP
Sbjct: 19 LAGLDYGDKTIGVAVSDGMRQVATPLDTIRRGKKFTQDAEALMAILDERAISGLVLGLPR 78
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+EGPR TRAF N + R P FWDERL+TV+A++ L++ + SR KR +D
Sbjct: 79 NMDGTEGPRCQKTRAFARN-LSRLTERPITFWDERLSTVAAERALLEADTSRAKRSGVID 137
Query: 138 SIAAALILQEVLDRISFL 155
+AA ILQ LDR+ L
Sbjct: 138 HVAAGYILQGALDRMRHL 155
>gi|332186801|ref|ZP_08388543.1| uncharacterized family protein [Sphingomonas sp. S17]
gi|332013134|gb|EGI55197.1| uncharacterized family protein [Sphingomonas sp. S17]
Length = 154
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+GTK IG A+ D G FA P + R K T+ L++ I + + +IGLPLN++
Sbjct: 23 GLDVGTKTIGTALCDAGWSFASPATLVRRTKFTKDKEALIAMIAQQGVKGLVIGLPLNLD 82
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSE PR STRAF N D P + WDER +TV+ ++ +I+ ++SR KR +++D++A
Sbjct: 83 GSESPRSQSTRAFARNCAD---LGPILLWDERWSTVAVERTMIEQDMSRAKRAERIDNLA 139
Query: 141 AALILQEVLD 150
AA ILQ +D
Sbjct: 140 AAHILQAAID 149
>gi|85716409|ref|ZP_01047381.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A]
gi|85696766|gb|EAQ34652.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A]
Length = 166
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 86/142 (60%), Gaps = 1/142 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +DLGT+ IG+A+SDP RR A + RK T A LL+ + FI+GLP+N
Sbjct: 21 LVGLDLGTRTIGVAVSDPDRRLATGVETIRRKAFTADAARLLAIAGERHAKGFILGLPIN 80
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSEGPR STRAF N+ R + WDERL+T + ++ LI +++SR +R + +D
Sbjct: 81 MDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTAAVERELIGLDMSRARRARVIDE 139
Query: 139 IAAALILQEVLDRISFLESSKG 160
AA ILQ LDR++ S G
Sbjct: 140 HAAIFILQGALDRLAAQRRSSG 161
>gi|159043613|ref|YP_001532407.1| Holliday junction resolvase-like protein [Dinoroseobacter shibae
DFL 12]
gi|157911373|gb|ABV92806.1| holliday junction resolvase YqgF [Dinoroseobacter shibae DFL 12]
Length = 163
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 85/140 (60%), Gaps = 1/140 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + +DLGT IG+A+SD A P + RKK A L + + ++ I+GL
Sbjct: 18 GRALMGLDLGTATIGVAVSDLMWSVATPLETVKRKKFGLDAARLEALMDARDVGGLILGL 77
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+GSEGPR STRAF N R+ +P FWDERL+TV+A++ L++ + SR +R +
Sbjct: 78 PRNMDGSEGPRAQSTRAFARNFTARRP-IPIAFWDERLSTVAAERALLEADTSRARRAEV 136
Query: 136 VDSIAAALILQEVLDRISFL 155
+D +AA+ ILQ LDR +
Sbjct: 137 IDHVAASYILQGALDRFGHM 156
>gi|91977491|ref|YP_570150.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5]
gi|123735326|sp|Q135J0|RUVX_RHOPS RecName: Full=Putative Holliday junction resolvase
gi|91683947|gb|ABE40249.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5]
Length = 160
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLGTK IG+A+SDP R+ A + R T A +L+ + F++GLPLNM+
Sbjct: 23 GLDLGTKTIGVAVSDPDRKLATGIETVARTAFTADAKRVLALAAERSACGFVLGLPLNMD 82
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPR STRAF N R +P WDERL+T + ++ LI +VSR KR + +D A
Sbjct: 83 GSEGPRAQSTRAFARNFA-RLTELPIGLWDERLSTAAVERALIANDVSRAKRAKIIDEHA 141
Query: 141 AALILQEVLDRISFL 155
A ILQ LDR+ L
Sbjct: 142 AIYILQGALDRLVAL 156
>gi|16126678|ref|NP_421242.1| hypothetical protein CC_2439 [Caulobacter crescentus CB15]
gi|221235457|ref|YP_002517894.1| endonuclease involved in recombination [Caulobacter crescentus
NA1000]
gi|32130061|sp|Q9A5K8|RUVX_CAUCR RecName: Full=Putative Holliday junction resolvase
gi|254767503|sp|B8GZJ7|RUVX_CAUCN RecName: Full=Putative Holliday junction resolvase
gi|13423984|gb|AAK24410.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220964630|gb|ACL95986.1| endonuclease involved in recombination [Caulobacter crescentus
NA1000]
Length = 156
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L IED +L + +D G K IG+A+SD R A P + + K ++ A +L
Sbjct: 1 MPVLDIEDFADALPQYAAVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEQLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + A +IGLP+NM+G+EG R S RA N++ K +P FWDERL+T + +
Sbjct: 61 KLMDSRGAVAIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR 120
Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+LID ++SRK+R + VD +AA ILQ L+R+ L
Sbjct: 121 VLIDEHDISRKRRDEVVDKMAAGWILQGALERLRGL 156
>gi|220923238|ref|YP_002498540.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS
2060]
gi|219947845|gb|ACL58237.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS
2060]
Length = 163
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLGTK IGLA+SD GRR A P + R K T A +L + +IGLPLNM+
Sbjct: 22 GLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDAQKLAGIARQHGVGGLVIGLPLNMD 81
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPR STRAFV N+ + +P + +DERL+T + + L++ + SR +R VD +A
Sbjct: 82 GSEGPRAQSTRAFVRNLAP-ILPLPVLLFDERLSTAAVTRTLLEADASRARRGDLVDKLA 140
Query: 141 AALILQEVLDRISFL 155
AA ILQ LD ++ L
Sbjct: 141 AAYILQGCLDVLAGL 155
>gi|170742466|ref|YP_001771121.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46]
gi|168196740|gb|ACA18687.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46]
Length = 168
Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 1/139 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLGTK IGLA+SD GRR A P + R K T A L + + ++G PLNM+
Sbjct: 22 GLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDARRLAAIAAEHGVGGLVVGHPLNMD 81
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPR STRAFV N+ + +P + +DERL+T + + L++ + SR +R + VD +A
Sbjct: 82 GSEGPRAQSTRAFVRNLAP-ILPLPVLLFDERLSTAAVTRTLLEADASRARRGKLVDKLA 140
Query: 141 AALILQEVLDRISFLESSK 159
AA ILQ LD ++ LE +
Sbjct: 141 AAYILQGCLDVLAGLEPEE 159
>gi|75676194|ref|YP_318615.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255]
gi|146325584|sp|Q3SR28|RUVX_NITWN RecName: Full=Putative Holliday junction resolvase
gi|74421064|gb|ABA05263.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255]
Length = 163
Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
S+L + + + +DLGTK IG+A+SDP RR A + RK T A LL+
Sbjct: 4 SVLPLVEAAAHWPARGALVGLDLGTKTIGVAVSDPDRRLATGVETIRRKTFTADAARLLA 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
FI+GLP+NM+GSEGPR STRAF N+ R WDERL+T + ++
Sbjct: 64 IAGERRAEGFILGLPINMDGSEGPRAQSTRAFARNLA-RLTDFAIGLWDERLSTAAVERE 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
LI +++SR +R + +D AA ILQ LDR++ + G
Sbjct: 123 LIGLDMSRARRAKVIDEHAAIFILQGALDRLATQRRTSG 161
>gi|295690146|ref|YP_003593839.1| Holliday junction resolvase YqgF [Caulobacter segnis ATCC 21756]
gi|295432049|gb|ADG11221.1| Holliday junction resolvase YqgF [Caulobacter segnis ATCC 21756]
Length = 156
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L IED +L P+ +D G K IG+A+SD R A P + + K ++ A L
Sbjct: 1 MPVLDIEDFAAALPQYAPVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEALF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +IGLP+NM+G+EG R S RA N++ K +P FWDERL+T + +
Sbjct: 61 KLMDSRGAVGIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR 120
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+LI + +V+RK+R + VD +AA ILQ L+R+ L
Sbjct: 121 VLIEEHDVNRKRRAEVVDKMAAGWILQGALERLRGL 156
>gi|118597211|sp|Q28QB4|RUVX_JANSC RecName: Full=Putative Holliday junction resolvase
Length = 160
Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 92/154 (59%), Gaps = 2/154 (1%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+++ ++ P + + +DLGTK IG+A+SD A + RKK A L I
Sbjct: 6 LDEFAGAVPPMRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAK 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK--VYVPFVFWDERLTTVSAQQILI 123
+ I+GLP NM+GSEGPR +TRAF N+ R ++ FWDERL+TV+A++ LI
Sbjct: 66 HEVGGIILGLPRNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAAERALI 125
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+ SRK+R + +D++AA+ ILQ LDR+ L +
Sbjct: 126 AADTSRKRRSEVIDAVAASYILQGALDRLRHLRA 159
>gi|39936176|ref|NP_948452.1| Holliday junction resolvase-like protein [Rhodopseudomonas
palustris CGA009]
gi|192291893|ref|YP_001992498.1| Holliday junction resolvase-like protein [Rhodopseudomonas
palustris TIE-1]
gi|62900984|sp|Q6N569|RUVX_RHOPA RecName: Full=Putative Holliday junction resolvase
gi|226731645|sp|B3Q9X0|RUVX_RHOPT RecName: Full=Putative Holliday junction resolvase
gi|39650031|emb|CAE28554.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
gi|192285642|gb|ACF02023.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris TIE-1]
Length = 160
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLGTK IG+A SDP R+ A + RK T A LL+ F++GLPLNM+
Sbjct: 23 GLDLGTKTIGVAASDPDRKLATGVETIARKAFTADAARLLALAAERTACGFVLGLPLNMD 82
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPR STRAF N+ R +P WDERL+T + ++ LI +VSR KR + +D A
Sbjct: 83 GSEGPRAQSTRAFARNL-SRLTELPIGLWDERLSTAAVERELIANDVSRAKRAKVIDEHA 141
Query: 141 AALILQEVLDRISFLESSK 159
A ILQ LDR++ L ++
Sbjct: 142 AIFILQGALDRLAALRRAE 160
>gi|149185993|ref|ZP_01864308.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21]
gi|148830554|gb|EDL48990.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21]
Length = 162
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Query: 26 TKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP 85
TK IG+A D G RFA + R K T +L +T +IA ++GLP NM+G+EGP
Sbjct: 32 TKTIGVATCDAGWRFATAGKTIERSKFTTDCGKLREIVTARSIAGLVVGLPRNMDGTEGP 91
Query: 86 RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALIL 145
R ++RA+ N+ R +P + WDER +T SA+ +I ++SR KR +K+DS AAA+IL
Sbjct: 92 RAQASRAYAKNLA-RAFGLPVLLWDERWSTSSAESAMIGQDMSRAKRAEKIDSHAAAVIL 150
Query: 146 QEVLDRIS 153
Q +D ++
Sbjct: 151 QGAIDTLA 158
>gi|167645483|ref|YP_001683146.1| Holliday junction resolvase YqgF [Caulobacter sp. K31]
gi|189046089|sp|B0T191|RUVX_CAUSK RecName: Full=Putative Holliday junction resolvase
gi|167347913|gb|ABZ70648.1| Holliday junction resolvase YqgF [Caulobacter sp. K31]
Length = 164
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 1/161 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L I + ++ PI +D G K IG+A+SD A P + + K ++ A L
Sbjct: 1 MPVLDIAEFAAAIPDYLPIVGLDPGEKTIGVAVSDVTLTVASPLALIKKTKFSEDAATLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + A +IGLP+NM+G+EG R S RA N++ + ++P FWDERL+T + +
Sbjct: 61 QLMGSRKAAGIVIGLPMNMDGTEGVRCQSNRALGRNLLRLQPHIPITFWDERLSTAAVTR 120
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+LI + +V+RK+R + VD +AAA ILQ L+R+ + + G
Sbjct: 121 VLIEEHDVNRKRRAEVVDKMAAAWILQGALERMRGIAEAAG 161
>gi|294084181|ref|YP_003550939.1| putative Holliday junction resolvase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663754|gb|ADE38855.1| Putative Holliday junction resolvase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 159
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I + D+ +S+ Q + +D+G K IGLA+SD G + A P L R K T EL
Sbjct: 1 MPICKLNDVKQSISDGQRLLGLDIGKKTIGLALSDAGLKIATPVKILYRTKFTPDVAELF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ +N+ ++G P+NM+GS GPR STR F + ++ R VP F DERL+T + +
Sbjct: 61 KLVDEQNVGGLVLGWPVNMDGSTGPRCDSTRDFAYALM-RIRDVPVFFQDERLSTQAVES 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+I +++R KR + D++AA ILQ LD I
Sbjct: 120 AMIAADMTRAKRAVRRDALAAGWILQSALDTI 151
>gi|144897944|emb|CAM74808.1| Holliday junction resolvase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 163
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IL I +L +L + + +DLGTK IGLA+SD A P + R K T+ A L
Sbjct: 1 MPILPIAELKTALPRHARLMGLDLGTKTIGLALSDVRLSIASPFDTIRRTKFTKDAEALF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + A ++GLP+ M+G+EG R STRAF N++ + +P VFWDERL+T + +
Sbjct: 61 AALDKHEAAGIVLGLPVEMDGTEGARCQSTRAFARNLLGLR-DLPIVFWDERLSTAAVTR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L++ + SR +R + VD +AAA ILQ LD
Sbjct: 120 TLLEADSSRARRAEVVDKMAAAYILQGALD 149
>gi|329851398|ref|ZP_08266155.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum
C19]
gi|328840244|gb|EGF89816.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum
C19]
Length = 157
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ I +L L + +DLG K IG+A+SD A P + + K T A L
Sbjct: 1 MAVIDITELKAGLPARHALLGLDLGEKTIGVAVSDISLTLASPLELIRKTKFTHEAERLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ A +IGLP+NM+G+EGPR S RAF N++ R VP FWDER ++ + +
Sbjct: 61 HLMQAREAAGLVIGLPVNMDGTEGPRAQSCRAFARNLL-RLRDVPIAFWDERWSSAAMNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
LI + ++SR KR + +D AAA ILQ LDRI
Sbjct: 120 FLIEEADLSRAKRAEVIDRNAAAYILQGALDRI 152
>gi|154247845|ref|YP_001418803.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2]
gi|154161930|gb|ABS69146.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2]
Length = 176
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+ D+ L P + +DLGTK IG+A DP RR A + R K T A LL+
Sbjct: 13 LADIAPLLPPRGALLGLDLGTKTIGVASCDPDRRVATVVETVQRTKFTADAQRLLALAAE 72
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
F++GLPLNM+ SEGPR ++RAF N+ R +P WDERL+T + ++ LI
Sbjct: 73 RRAVGFVLGLPLNMDASEGPRAQASRAFARNLA-RLTALPIALWDERLSTAAVERALISA 131
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
+VSR +R VD AAA IL+ L +S
Sbjct: 132 DVSRARRAAVVDQHAAAFILEGALGFLS 159
>gi|89054672|ref|YP_510123.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1]
gi|88864221|gb|ABD55098.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1]
Length = 145
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLGTK IG+A+SD A + RKK A L I + I+GLP NM+
Sbjct: 6 GLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAKHEVGGIILGLPRNMD 65
Query: 81 GSEGPRVHSTRAFVHNMIDRK--VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
GSEGPR +TRAF N+ R ++ FWDERL+TV+A++ LI + SRK+R + +D+
Sbjct: 66 GSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAAERALIAADTSRKRRSEVIDA 125
Query: 139 IAAALILQEVLDRISFLES 157
+AA+ ILQ LDR+ L +
Sbjct: 126 VAASYILQGALDRLRHLRA 144
>gi|254460515|ref|ZP_05073931.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
HTCC2083]
gi|206677104|gb|EDZ41591.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
bacterium HTCC2083]
Length = 160
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I+D +L + + +DLGTK IG+++SD A P + R K T A L I
Sbjct: 6 IDDFAAALPRARALVGLDLGTKTIGVSVSDGLLSVASPLETIKRTKYTADAARLEQIIEA 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I ++GLP NM+GSEGPR STRAF N+ R+ +P +WDERL+TV+A++ L+
Sbjct: 66 RYIGGIVLGLPFNMDGSEGPRCQSTRAFARNLA-RQSELPITYWDERLSTVAAERALLAA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ SR++R + +D++AAA ILQ LDR+S +
Sbjct: 125 DASRRRRAEVIDNVAAAYILQGALDRLSHI 154
>gi|148259884|ref|YP_001234011.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5]
gi|167012685|sp|A5FWW0|RUVX_ACICJ RecName: Full=Putative Holliday junction resolvase
gi|146401565|gb|ABQ30092.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5]
Length = 158
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 89/150 (59%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++ + DL +L N + +D G+K IG+A+SD GRR A P + R K+ + A +L
Sbjct: 1 MTLFNLTDLASTLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMKRGKLAEAAATIL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
E AA IIGLPL+M+GS GP + R + H I R+ +P DERL++ + +
Sbjct: 61 DIARKEGAAALIIGLPLSMDGSIGPAAQAARDWAH-AIARETGLPVAMMDERLSSAAVNR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
LI+ +V+R KR +VD+ AA+ +LQ LD
Sbjct: 120 ALIEADVTRAKRAGRVDAAAASYMLQGALD 149
>gi|326403186|ref|YP_004283267.1| putative Holliday junction resolvase [Acidiphilium multivorum
AIU301]
gi|325050047|dbj|BAJ80385.1| putative Holliday junction resolvase [Acidiphilium multivorum
AIU301]
Length = 158
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 89/150 (59%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++ + DL +L N + +D G+K IG+A+SD GRR A P + R K+ +A +L
Sbjct: 1 MTLFNLTDLASTLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMKRGKLADSAATIL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
E AA IIGLPL+M+GS GP + R + H I R+ +P DERL++ + +
Sbjct: 61 DIARKEGAAALIIGLPLSMDGSIGPAAQAARDWAH-AIARETGLPVAMMDERLSSAAVNR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
LI+ +V+R KR +VD+ AA+ +LQ LD
Sbjct: 120 ALIEADVTRAKRAGRVDAAAASYMLQGALD 149
>gi|163852734|ref|YP_001640777.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1]
gi|163664339|gb|ABY31706.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1]
Length = 160
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLGTK IG+A+SD GR+ A P + R K T ++S T + +IGLPLNM+
Sbjct: 16 GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPLNMD 75
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPR S+R+F N+ + +P +F+DERL+T + + LI+ + SR +R + VD +A
Sbjct: 76 GSEGPRAQSSRSFARNLK-PLLPLPVLFFDERLSTAAVTRTLIEADASRARRGELVDKLA 134
Query: 141 AALILQEVLD 150
AA ILQ LD
Sbjct: 135 AAYILQSCLD 144
>gi|218531575|ref|YP_002422391.1| Holliday junction resolvase YqgF [Methylobacterium chloromethanicum
CM4]
gi|218523878|gb|ACK84463.1| Holliday junction resolvase YqgF [Methylobacterium chloromethanicum
CM4]
Length = 165
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLGTK IG+A+SD GR+ A P + R K T ++S T + +IGLPLNM+
Sbjct: 21 GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPLNMD 80
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPR S+R+F N+ + +P +F+DERL+T + + LI+ + SR +R + VD +A
Sbjct: 81 GSEGPRAQSSRSFARNLK-PLLPLPVLFFDERLSTAAVTRTLIEADASRARRGELVDKLA 139
Query: 141 AALILQEVLD 150
AA ILQ LD
Sbjct: 140 AAYILQSCLD 149
>gi|304320050|ref|YP_003853693.1| putative endonuclease [Parvularcula bermudensis HTCC2503]
gi|303298953|gb|ADM08552.1| putative endonuclease [Parvularcula bermudensis HTCC2503]
Length = 158
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P P+ +D G+K IG+A+S P RR A P + R K + A L + + IIG
Sbjct: 13 PKGPLLGLDPGSKTIGVAVSTPERRLATPVTVIRRTKFGKDAEALFALAEARGVVGLIIG 72
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+PLNM+GSEGPR S R F N+ R +P +WDERL++V+A++ L+ + SR +R +
Sbjct: 73 VPLNMDGSEGPRAQSARTFGRNLSQRG-PLPVAYWDERLSSVAAERALLATDTSRARRAE 131
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA ILQ LDR++
Sbjct: 132 VIDAHAATHILQGALDRLA 150
>gi|254294342|ref|YP_003060365.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814]
gi|254042873|gb|ACT59668.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814]
Length = 150
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 6/154 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL ++ L P P+ +D GTK IG+A +D R A P + + K AL L
Sbjct: 1 MAILELD----QLPPRGPLLGLDPGTKTIGIAAADGLRMIASPVETIKKGKKLAPALTRL 56
Query: 61 SFITTENIA-AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ + + +IGLP+NM+GS GPRV + RA N+++++ VP FWDERL+T + +
Sbjct: 57 FELYDDRVCVGLVIGLPVNMDGSHGPRVQAVRALARNILEKR-DVPIAFWDERLSTAAVE 115
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ L++ + SR KR + +D +AAA ILQ +DR+S
Sbjct: 116 RTLLEADTSRAKRAEVIDKMAAAYILQGAIDRLS 149
>gi|254562494|ref|YP_003069589.1| Holliday junction resolvase [Methylobacterium extorquens DM4]
gi|254269772|emb|CAX25744.1| putative Holliday junction resolvase [Methylobacterium extorquens
DM4]
Length = 160
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLGTK IG+A+SD GR+ A P + R K T +++ T + +IGLPLNM+
Sbjct: 16 GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVTLCATHAVGGLVIGLPLNMD 75
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPR S+R+F N+ + +P +F+DERL+T + + LI+ + SR +R + VD +A
Sbjct: 76 GSEGPRAQSSRSFARNLK-PLLPLPVLFFDERLSTAAVTRTLIEADASRARRGELVDKLA 134
Query: 141 AALILQEVLD 150
AA ILQ LD
Sbjct: 135 AAYILQSCLD 144
>gi|90423758|ref|YP_532128.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
BisB18]
gi|146325601|sp|Q215X7|RUVX_RHOPB RecName: Full=Putative Holliday junction resolvase
gi|90105772|gb|ABD87809.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
BisB18]
Length = 163
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLGTK IG+A+SDP RR A ++ A LL N F++GLP+NM+
Sbjct: 23 GLDLGTKTIGVAVSDPDRRLATGVETIIHTAFKANAARLLLLAGQRNAVGFVLGLPINMD 82
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPR STRAF N R +P WDERL+T + ++ LI +VSR KR + +D A
Sbjct: 83 GSEGPRAQSTRAFARNFA-RLTDLPIGLWDERLSTSAVERELIANDVSRAKRAKVIDEHA 141
Query: 141 AALILQEVLDRISFLESS 158
A ILQ LDR++ L ++
Sbjct: 142 AIFILQGALDRLTVLNAA 159
>gi|188582759|ref|YP_001926204.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001]
gi|179346257|gb|ACB81669.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001]
Length = 165
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLGTK IG+A+SD GR+ A P + R K T A +++ + +IGLPLNM+
Sbjct: 21 GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDAGRIVALCAAHGVGGLVIGLPLNMD 80
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPR S+R+F N+ + +P +F+DERL+T + + L++ + SR +R + VD +A
Sbjct: 81 GSEGPRAQSSRSFARNLR-PLLPLPVLFFDERLSTAAVTRTLLEADASRARRGEVVDKLA 139
Query: 141 AALILQEVLD 150
AA ILQ LD
Sbjct: 140 AAYILQSCLD 149
>gi|114570258|ref|YP_756938.1| Holliday junction resolvase YqgF [Maricaulis maris MCS10]
gi|114340720|gb|ABI66000.1| Holliday junction resolvase YqgF [Maricaulis maris MCS10]
Length = 151
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 88/155 (56%), Gaps = 6/155 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I+ +EDL P+ P+ ++D G+K IG+A R + P + R K T A +
Sbjct: 1 MPIVTLEDL-----PDGPLIALDPGSKTIGVAACGASRGLSTPVETIKRTKFTADAERVF 55
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + A ++GLP+NM+GSEGPRV S RA N++ R +P F DERL+T A++
Sbjct: 56 ALLDERQAVAIVMGLPVNMDGSEGPRVQSVRAMARNLM-RLRDLPIAFQDERLSTFEAEE 114
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
LI V R KR +D+ AAA ILQ LDR+ L
Sbjct: 115 KLISAGVRRDKRKDIIDAHAAANILQSALDRLEML 149
>gi|240140069|ref|YP_002964546.1| putative Holliday junction resolvase [Methylobacterium extorquens
AM1]
gi|240010043|gb|ACS41269.1| putative Holliday junction resolvase [Methylobacterium extorquens
AM1]
Length = 165
Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLGTK IG+A+SD GR+ A P + R K T +++ T + +IGLPLNM+
Sbjct: 21 GLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVTLCATHAVGGLVIGLPLNMD 80
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPR S+R+F N+ + +P +F+DERL+T + + L++ + SR +R + VD +A
Sbjct: 81 GSEGPRAQSSRSFARNLK-PLLPLPVLFFDERLSTAAVTRTLLEADASRARRGELVDKLA 139
Query: 141 AALILQEVLD 150
AA ILQ LD
Sbjct: 140 AAYILQSCLD 149
>gi|83594508|ref|YP_428260.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170]
gi|146325602|sp|Q2RPH2|RUVX_RHORT RecName: Full=Putative Holliday junction resolvase
gi|83577422|gb|ABC23973.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170]
Length = 161
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 88/151 (58%), Gaps = 2/151 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I ++ +L P +P+ +DLGT+ IG+A SD A P + R+K T EL
Sbjct: 1 MPICSLQTFADALPPGRPVLGLDLGTRTIGVATSDVRLTLATPIITIKRRKFTLDVQELF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ A ++GLP+ M+GSEGPR +TRAF N++ + +P + WDERL+T + +
Sbjct: 61 ALADGRAAAGLVLGLPVEMDGSEGPRCQATRAFARNLLALR-DLPVLLWDERLSTAAVNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
L+ + +++R +R + VD AAA ILQ LD
Sbjct: 120 FLVGEADMTRARRAEVVDRAAAAYILQGALD 150
>gi|300022168|ref|YP_003754779.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC
51888]
gi|299523989|gb|ADJ22458.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC
51888]
Length = 166
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GTK +GLA+SD R A + R K T A LL+ T + ++GLP N++
Sbjct: 32 GIDGGTKTLGLALSDVTRTIASALETIRRTKFTADAARLLALATEHGVTGLVLGLPRNLD 91
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+EGPR +TRA N+ ++ +P + WDERLTT A+++LID + SRK+R + +D +A
Sbjct: 92 GTEGPRAQATRALARNL-NKLSPLPILLWDERLTTAEAERMLIDADQSRKRRGEVIDKLA 150
Query: 141 AALILQEVLDRIS 153
A +ILQ LDR+
Sbjct: 151 ATIILQSALDRLG 163
>gi|315500169|ref|YP_004088972.1| holliday junction resolvase yqgf [Asticcacaulis excentricus CB 48]
gi|315418181|gb|ADU14821.1| Holliday junction resolvase YqgF [Asticcacaulis excentricus CB 48]
Length = 167
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 11/163 (6%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL I +L +L P + + +DLG K IG+A+SD P + + K TQ A LL
Sbjct: 1 MAILDITELKAALPPRRALIGLDLGEKTIGVAVSDISLSIGSPLELIKKSKFTQEAERLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY----------VPFVFWD 110
+ + +IGLP+NM+G+EGPR S RAF N++ +P FWD
Sbjct: 61 LLMKQREASGLVIGLPVNMDGTEGPRCQSVRAFARNLLRLPAEKFAAAGLEPDLPIAFWD 120
Query: 111 ERLTTVSAQQILI-DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
ER ++ + LI + +++R KR + +D AAA ILQ LDRI
Sbjct: 121 ERWSSSVMNRFLIEEADLTRAKRAEVIDRSAAAYILQGALDRI 163
>gi|304391702|ref|ZP_07373644.1| putative Holliday junction resolvase [Ahrensia sp. R2A130]
gi|303295931|gb|EFL90289.1| putative Holliday junction resolvase [Ahrensia sp. R2A130]
Length = 160
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
IDLGTK IGLAISD + P + R K T +L F T E ++ +IGLPLNM+
Sbjct: 24 GIDLGTKTIGLAISDENWAISSPVRTIKRTKFTPDVQAMLEFATAERVSGIVIGLPLNMD 83
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPR S+RAF N+ R +P WDE L+T A + + ++ K K+D++A
Sbjct: 84 GSEGPRAQSSRAFARNL-SRLTELPIQLWDESLSTSEALEGVSAKKAAQMKADGKLDALA 142
Query: 141 AALILQEVLDRISFL 155
A+LILQ D + L
Sbjct: 143 ASLILQGCCDAMRAL 157
>gi|307292653|ref|ZP_07572499.1| Holliday junction resolvase YqgF [Sphingobium chlorophenolicum L-1]
gi|306880719|gb|EFN11935.1| Holliday junction resolvase YqgF [Sphingobium chlorophenolicum L-1]
Length = 156
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 82/130 (63%), Gaps = 2/130 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+GTK IGLA+ D G A P + R K ++ + L +F+ + + +IGLPLN++
Sbjct: 23 GLDVGTKTIGLALCDAGWSIASPAHTVSRGKFSKDKIALAAFMEQQQVKGVVIGLPLNLD 82
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSE PR ++RAF N+ D + +P +FWDER +T + + L++ + SR +R + VD +A
Sbjct: 83 GSESPRSQASRAFGRNIAD--LGLPILFWDERWSTQAVTRTLLEADASRARREELVDKLA 140
Query: 141 AALILQEVLD 150
A+ ILQ +D
Sbjct: 141 ASYILQGAID 150
>gi|87198928|ref|YP_496185.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans
DSM 12444]
gi|146325585|sp|Q2G9X2|RUVX_NOVAD RecName: Full=Putative Holliday junction resolvase
gi|87134609|gb|ABD25351.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans
DSM 12444]
Length = 155
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 2/146 (1%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
++ +L + +D GTK IG+A+ D RFA + R K ++ + +
Sbjct: 8 EMRDALAEGGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIRAIVAERG 67
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+ +IGLPLNM+GSE PR RA N+ D + +P + WDER TT +A++ +I+ +
Sbjct: 68 VKGIVIGLPLNMDGSESPRSQGARAMARNLED--LGLPILLWDERWTTQAAERAMIEQDF 125
Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
SR KR +++DS AAALILQ +D ++
Sbjct: 126 SRAKRAERIDSHAAALILQGAIDALA 151
>gi|294012198|ref|YP_003545658.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S]
gi|292675528|dbj|BAI97046.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S]
Length = 156
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 91/152 (59%), Gaps = 4/152 (2%)
Query: 1 MSILLIEDLV--KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
MSIL + ++L + +D+GTK IG+A+ D G A P + R K ++ +
Sbjct: 1 MSILTADRAAFREALPHGGRLIGLDVGTKTIGIALCDAGWSIASPAHTVSRGKFSKDKIA 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
L +F+ + + +IGLPLN++GSE PR ++RAF N+ D + +P +FWDER +T +
Sbjct: 61 LAAFMEQQQVKGVVIGLPLNLDGSESPRSQASRAFGRNIAD--LGLPILFWDERWSTQAV 118
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ L++ + SR +R + VD +AA+ ILQ +D
Sbjct: 119 TRTLLEADASRARRGELVDKLAASYILQGAID 150
>gi|316933654|ref|YP_004108636.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris DX-1]
gi|315601368|gb|ADU43903.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris DX-1]
Length = 160
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 80/134 (59%), Gaps = 1/134 (0%)
Query: 26 TKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP 85
TK IG+A SDP RR A + RK T A LL+ F++GLPLNM+GSEGP
Sbjct: 28 TKTIGVAASDPDRRLATGVETIARKAFTADAARLLALAAERTACGFVLGLPLNMDGSEGP 87
Query: 86 RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALIL 145
R STRAF N+ + +P WDERL+T + ++ LI +VSR KR + +D AA IL
Sbjct: 88 RAQSTRAFARNLA-KLTELPIGLWDERLSTAAVERELIANDVSRAKRAKVIDEHAAIFIL 146
Query: 146 QEVLDRISFLESSK 159
Q LDR++ L ++
Sbjct: 147 QGALDRLAALRRAE 160
>gi|148553525|ref|YP_001261107.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1]
gi|167016511|sp|A5V3V3|RUVX_SPHWW RecName: Full=Putative Holliday junction resolvase
gi|148498715|gb|ABQ66969.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1]
Length = 151
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 2/143 (1%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
D +L +A +D+GT+ IG+A+ D G A P ++R K + A +L + + +
Sbjct: 8 DFRDALPDRGRLAGLDVGTRTIGVALCDAGWTIASPAETILRAKFSVDAAKLRALVAAQL 67
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+ +IGLPLN++GS+ PR S RAF N+ +P + WDER +T + + L+D +
Sbjct: 68 VKGLVIGLPLNLDGSDSPRTQSVRAFARNV--EPFGLPILLWDERWSTQAVTRTLLDADA 125
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
SR +R + VD +AAA ILQ +D
Sbjct: 126 SRARRAELVDKLAAAYILQGAID 148
>gi|163792874|ref|ZP_02186850.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199]
gi|159181520|gb|EDP66032.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199]
Length = 168
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I DL + L P + +D GTK IG+A+SD R A P + R+K ++ A E+L
Sbjct: 1 MAICKPADLHRLLGPGARLMGLDFGTKTIGIAVSDAALRVASPVTIIRRRKFSEDAAEIL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + NI F++GLPLNM+G+EGPR STR ++ R +P VF DER++T + ++
Sbjct: 61 ALVGSRNIGGFVVGLPLNMDGTEGPRCQSTRDLTAELLLRH-DLPTVFQDERMSTQAVER 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
+I + +++R +R + +DS AAA ILQ LD
Sbjct: 120 AMISEADLTRGQRKKSIDSAAAAWILQAALD 150
>gi|262277133|ref|ZP_06054926.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
gi|262224236|gb|EEY74695.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
Length = 156
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
+D + + N I ID G K IGL++SDP ++ A P +V KK Q EL + I
Sbjct: 10 KDFLIKVGKNSRILGIDPGKKNIGLSVSDPNQKIATPFKIIVMKKFKQFLEELNNIIREY 69
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
I +IG P+NM+G+ GPR S R F N I + +P WDERL++ A ++ D++
Sbjct: 70 EIKGIVIGNPINMDGTSGPRSQSARDFAQN-ISKNTKLPITLWDERLSSEGAFNLMGDLD 128
Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
++ K+ + +D AAA ILQ LD
Sbjct: 129 INSSKKSKNLDQHAAAFILQGYLD 152
>gi|156743642|ref|YP_001433771.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM
13941]
gi|156234970|gb|ABU59753.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM
13941]
Length = 146
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 93/141 (65%), Gaps = 5/141 (3%)
Query: 13 LKPNQP--IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIA 69
+K ++P + ++D+G +RIG+A+SDP R A P +R K TAL+ + S I ++A
Sbjct: 1 MKIDEPGRVMALDVGEQRIGVALSDPTRTLATPL-TTIRAKPRATALKRIASLIREHDVA 59
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
A ++GLPL M+G GP+ + FV + R + +P F DERLTTV+A++++ID+ +
Sbjct: 60 ALVVGLPLTMSGDVGPQAALVQQFVEEL-RRAIAIPLTFVDERLTTVAAERMMIDLKLKP 118
Query: 130 KKRIQKVDSIAAALILQEVLD 150
++R ++D +AA++ILQ+ LD
Sbjct: 119 EQRKARIDEVAASIILQDFLD 139
>gi|94497357|ref|ZP_01303928.1| endonuclease [Sphingomonas sp. SKA58]
gi|94423220|gb|EAT08250.1| endonuclease [Sphingomonas sp. SKA58]
Length = 169
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 79/130 (60%), Gaps = 2/130 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+GTK IGLA+ D A P + R K + + L +FI + + +IGLPLN++
Sbjct: 35 GMDVGTKTIGLALCDAAWTIASPAYTVTRGKFGKDKIGLAAFIDQQQVKGVVIGLPLNLD 94
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS PR ++RAF HN+ D + +P + WDER +T + + L++ + SR +R + VD +A
Sbjct: 95 GSFSPRAQASRAFAHNIAD--LGLPILLWDERWSTQAVTRTLLEADASRARRDELVDKLA 152
Query: 141 AALILQEVLD 150
A+ ILQ +D
Sbjct: 153 ASYILQGAID 162
>gi|294102018|ref|YP_003553876.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM
12261]
gi|293616998|gb|ADE57152.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM
12261]
Length = 138
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G KRIG+A+SDP FA F+ K + L+L + + N+ +IG PL
Sbjct: 4 ILALDIGEKRIGMAVSDPLGCFAQGVGFIPMNK--EWLLKLDESLISLNVEMLLIGNPLR 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
NG+ GP + + R ++ V WDER TT AQQ+L++ NVSRKKR +KVD
Sbjct: 62 TNGTAGPETDKIKNIAAELKIRYPHISIVLWDERFTTSIAQQVLLEGNVSRKKRKEKVDQ 121
Query: 139 IAAALILQEVLD 150
+AAALILQ LD
Sbjct: 122 LAAALILQNYLD 133
>gi|118597226|sp|Q5NPF1|RUVX_ZYMMO RecName: Full=Putative Holliday junction resolvase
Length = 163
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
+A +D+GTK IGLA+ D A P + RKK T LELL F+ + + +IGLPL
Sbjct: 29 LAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFT-LDLELLRQFVEKQQVKGLVIGLPL 87
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
N++GS+ PR S RAF N+ + +P + WDER +T + + L++ + SR +R + VD
Sbjct: 88 NLDGSDSPRTQSVRAFAKNVA--PLSLPVLMWDERWSTKAVTRTLLEADASRARRSEVVD 145
Query: 138 SIAAALILQEVLD 150
+AAA ILQ +D
Sbjct: 146 KMAAAYILQGAID 158
>gi|167628659|ref|YP_001679158.1| holliday junction resolvase, putative [Heliobacterium modesticaldum
Ice1]
gi|226725525|sp|B0TFZ0|RUVX_HELMI RecName: Full=Putative Holliday junction resolvase
gi|167591399|gb|ABZ83147.1| holliday junction resolvase, putative [Heliobacterium modesticaldum
Ice1]
Length = 149
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+A+SD A + R ++ L + T + + GLP N
Sbjct: 3 IMGLDVGDKTIGVAVSDLMGWTAQGVATIRRSRLAADLEHLRELVKTYEVERIVCGLPRN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GPR R F +++++K+ +P +WDERLTTV+AQ+ LI ++SR KR Q VD
Sbjct: 63 MNGTYGPRAEGIRKF-GSLVEKKLNIPVDYWDERLTTVAAQKTLIAGDLSRAKRKQVVDK 121
Query: 139 IAAALILQEVLDRISFLESSK 159
+AA LILQ +D + L + +
Sbjct: 122 LAAVLILQNYMDAKAHLAAKE 142
>gi|56551681|ref|YP_162520.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241761198|ref|ZP_04759286.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|260752737|ref|YP_003225630.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|56543255|gb|AAV89409.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241374105|gb|EER63602.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|258552100|gb|ACV75046.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 179
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
+A +D+GTK IGLA+ D A P + RKK T LELL F+ + + +IGLPL
Sbjct: 45 LAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFT-LDLELLRQFVEKQQVKGLVIGLPL 103
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
N++GS+ PR S RAF N+ + +P + WDER +T + + L++ + SR +R + VD
Sbjct: 104 NLDGSDSPRTQSVRAFAKNVA--PLSLPVLMWDERWSTKAVTRTLLEADASRARRSEVVD 161
Query: 138 SIAAALILQEVLDRISFL 155
+AAA ILQ +D +
Sbjct: 162 KMAAAYILQGAIDSFAMF 179
>gi|269837589|ref|YP_003319817.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM
20745]
gi|269786852|gb|ACZ38995.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM
20745]
Length = 143
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ S +P + + ++D+G +R+G+A+SD A P + K+ L++ I +
Sbjct: 1 MASSSQPGRRLIALDVGARRVGVAVSDELGLIASPVESVDMKRDGMD--RLVALIERYDP 58
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
IIGLPL M+G EGP+ +TRAF + R V P +FWDERLTT A Q LI+
Sbjct: 59 ERIIIGLPLGMSGREGPQAAATRAFAQQLRGR-VDRPIIFWDERLTTFMADQSLIEAGHR 117
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
R +R Q VD++AAALILQ LD
Sbjct: 118 RARRKQHVDAVAAALILQSYLD 139
>gi|330814160|ref|YP_004358399.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
IMCC9063]
gi|327487255|gb|AEA81660.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
IMCC9063]
Length = 156
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
D K + + ID G + +G+AI DP A P + KK+ EL I N
Sbjct: 11 DFAKLITEGSRLLGIDPGKRNVGIAICDPSHLIATPYETIQAKKLKNLLEELDKIIIENN 70
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I ++G P+NM+G+EGPR ST+ FV N+I + ++P WDERL++V A + + D+ +
Sbjct: 71 IKGIVVGHPINMDGTEGPRSQSTKDFVKNII-KHTHLPVTLWDERLSSVGAFKSMQDLGI 129
Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152
+ + K+D +AA ILQ +D +
Sbjct: 130 NSSSKKDKLDENSAAFILQGFIDYL 154
>gi|296115811|ref|ZP_06834437.1| putative Holliday junction resolvase [Gluconacetobacter hansenii
ATCC 23769]
gi|295977788|gb|EFG84540.1| putative Holliday junction resolvase [Gluconacetobacter hansenii
ATCC 23769]
Length = 153
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 92/151 (60%), Gaps = 2/151 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + I +L +L+P Q + ID G K IG+A+SD A P + R+K++ A E+
Sbjct: 1 MPLFNIPELRLALRPGQRLMGIDPGQKTIGIALSDVSLMLASPCTTVRRRKLSLVAAEIG 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++ A + GLPL+++GS GP + R ++ N + ++V +P WDERL++ + +
Sbjct: 61 ELARRHDVGALVGGLPLSLDGSFGPAAQAARDWMMN-LSQQVGLPAAMWDERLSSSAVNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
+LI D++++R++R Q VD +AAA ILQ LD
Sbjct: 120 MLIQDVDMTRQRREQVVDKVAAAYILQAALD 150
>gi|295092925|emb|CBK82016.1| conserved hypothetical protein TIGR00250 [Coprococcus sp. ART55/1]
Length = 149
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 84/143 (58%), Gaps = 13/143 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAA----- 70
I +D GTK +G+A+SDP + A P + RK K+ QT L + I E AA
Sbjct: 3 ILGLDYGTKTVGVAVSDPLKMTAQPLETIERKSANKLRQT-LARIEAILEEYGAAGERDR 61
Query: 71 ---FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
++G P NMN SEG R +T+AF ++ +R+ + V WDERLTTV A++IL+D V
Sbjct: 62 IELIVLGYPKNMNNSEGDRCEATQAFKEDL-ERRTGLEVVLWDERLTTVEAERILMDSGV 120
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
R+ R +D +AAA+ILQ LD
Sbjct: 121 RRENRKTYIDKMAAAVILQNYLD 143
>gi|291087071|ref|ZP_06345320.2| putative Holliday junction resolvase [Clostridium sp. M62/1]
gi|291076386|gb|EFE13750.1| putative Holliday junction resolvase [Clostridium sp. M62/1]
Length = 175
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K G+A+SDP A +VRK K+ QT + I I A ++G
Sbjct: 38 IMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLGY 97
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R T +F M++R+ P + WDERLTT++A+++L++ V R+ R
Sbjct: 98 PKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKAV 156
Query: 136 VDSIAAALILQEVLD 150
+D +AAALILQ LD
Sbjct: 157 IDKVAAALILQGYLD 171
>gi|325479225|gb|EGC82321.1| RNAse H domain protein, YqgF family [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 139
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+A+SDP A + + RKK + LL I ++ ++GLP N
Sbjct: 4 IMGLDVGDKTIGVALSDPMFLLAQAKETIKRKKASLDIQRLLEIIDENDVNLIVVGLPKN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GP+ +FV +++ ++ V V+ DER+TT+ ++ +LIDM V R+ R Q +D
Sbjct: 64 MNNTIGPQSMKVMSFV-DLLKKQTDVEIVYEDERMTTIQSESVLIDMKVRRENRKQYIDK 122
Query: 139 IAAALILQEVLDR 151
IAA ILQ LDR
Sbjct: 123 IAATFILQTYLDR 135
>gi|295092198|emb|CBK78305.1| conserved hypothetical protein TIGR00250 [Clostridium cf.
saccharolyticum K10]
Length = 140
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K G+A+SDP A +VRK K+ QT + I I A ++G
Sbjct: 3 IMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R T +F M++R+ P + WDERLTT++A+++L++ V R+ R
Sbjct: 63 PKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKAV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AAALILQ LD
Sbjct: 122 IDKVAAALILQGYLD 136
>gi|291563945|emb|CBL42761.1| conserved hypothetical protein TIGR00250 [butyrate-producing
bacterium SS3/4]
Length = 144
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+A+SD A + RK K+ +T + I + ++GL
Sbjct: 3 ILGLDFGSKTVGVAVSDGLLLTAQGVETIERKDENKLRKTCARIEELIAEYEVTEIVLGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+ +EG RV T+AF M++R+ +P +WDERLTTV+A+QIL++ V R+ R
Sbjct: 63 PKNMDNTEGERVEKTKAF-GEMLERRTGLPVHYWDERLTTVAAEQILMESGVRRENRKAV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 122 IDKVAAGLILQGYLD 136
>gi|114566022|ref|YP_753176.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|122318867|sp|Q0AZP9|RUVX_SYNWW RecName: Full=Putative Holliday junction resolvase
gi|114336957|gb|ABI67805.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 141
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +DLG KRIG+A SDP A L RK + + L + ++GLPLN
Sbjct: 3 IMGLDLGEKRIGIAFSDPMGWTAQGHSILQRKGLKKDLSYLQELCQEFQVEKIVLGLPLN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP+ T+ F + + +P FWDERL++ SA+++L++ ++SRK+R + +D
Sbjct: 63 MNGTMGPKALETQEFAR-ALQEALKIPVDFWDERLSSKSAERVLLEADLSRKRRKELIDK 121
Query: 139 IAAALILQEVLD 150
IAA ILQ LD
Sbjct: 122 IAAVHILQAYLD 133
>gi|253574901|ref|ZP_04852241.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845947|gb|EES73955.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 138
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D G +RIG+A+SD A + R+K + + + ++GLP N
Sbjct: 3 IMGLDYGDRRIGVAVSDSLGWTAQGLETIERRKEGSEFERIAELVKQHEVEEIVVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GPR AF ++ K+ +P WDERLTTVSAQ+ L+D +VSRKKR VD
Sbjct: 63 MNGTIGPRGEICMAFAEDL-RAKLNLPVHLWDERLTTVSAQRTLLDADVSRKKRKGVVDK 121
Query: 139 IAAALILQEVLDRISF 154
+AA+LILQ LD S
Sbjct: 122 MAASLILQNYLDSKSI 137
>gi|149174656|ref|ZP_01853281.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797]
gi|148846350|gb|EDL60688.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797]
Length = 162
Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D GTKR+G+AIS + A P R+ + Q LLS IT ++GLP++M+
Sbjct: 23 GLDYGTKRVGIAISTFEQNIASPLDNYNRQSLPQDQKHLLSIITEYRCKGLVVGLPVHMS 82
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG + R F N + + +P +WDER ++ +A++IL+++N+SR KR +D +A
Sbjct: 83 GDEGQKAKEARQF-GNWVSQFAEIPVRYWDERYSSATAEEILVNLNMSRNKRKAYLDKLA 141
Query: 141 AALILQEVLD 150
A +ILQ LD
Sbjct: 142 AQIILQSFLD 151
>gi|83590476|ref|YP_430485.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
39073]
gi|146325578|sp|Q2RHZ7|RUVX_MOOTA RecName: Full=Putative Holliday junction resolvase
gi|83573390|gb|ABC19942.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
39073]
Length = 140
Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+GTK IG+A+SDP A + R+ + L + + ++GLP N
Sbjct: 3 IMGLDVGTKTIGVALSDPLGWTAQGLTTIRRRNLAADLAALKELVRRYGVEELVVGLPRN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNGS GP+ + RAF ++ +V +P F+DERLTTV+A ++L++ ++SR++R Q +D
Sbjct: 63 MNGSLGPQAEAVRAFARHL-QAEVGLPVHFFDERLTTVAAGRVLLEADLSRRRRRQVIDQ 121
Query: 139 IAAALILQEVLDRIS 153
+AA ILQ LDR+
Sbjct: 122 VAATYILQGYLDRLG 136
>gi|312880062|ref|ZP_07739862.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260]
gi|310783353|gb|EFQ23751.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260]
Length = 144
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++DLGT R+G+A+SDP RRFA P L ++ Q EL + T + ++GLP
Sbjct: 6 VLALDLGTVRVGVALSDPTRRFAQPLDVLPAQENWIQRVREL---VVTHQVTLVLVGLPT 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G+ GP V R + + VP F+DER TT AQQ L+ +VSRK R Q+VD
Sbjct: 63 RTDGTAGPEVERVRGWTEELRQGIPQVPIQFYDERFTTRIAQQALLAGDVSRKGRKQRVD 122
Query: 138 SIAAALILQEVLD 150
+AAA++LQ LD
Sbjct: 123 KVAAAVLLQGFLD 135
>gi|83945529|ref|ZP_00957876.1| hypothetical protein OA2633_01404 [Oceanicaulis alexandrii
HTCC2633]
gi|83851105|gb|EAP88963.1| hypothetical protein OA2633_01404 [Oceanicaulis alexandrii
HTCC2633]
Length = 162
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
L +L P P+ +ID GTK +G+A+S+ R P + R+K TQ A LL+
Sbjct: 4 LDPALLPQGPLMAIDPGTKTLGVAVSNTDRTLVTPLTTIQREKFTQDAQALLNLYDERAC 63
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
I+GLPL+M+G +G R S+R+FV N++ R +P + DERL+T +A + LI+ V
Sbjct: 64 VGLIVGLPLHMHGGDGRRAQSSRSFVTNLL-RLRDLPVAYQDERLSTFAATESLIEAGVK 122
Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153
R VD+ AAA+IL+ + RI+
Sbjct: 123 PSHRKDFVDAQAAAVILESAIGRIN 147
>gi|295115537|emb|CBL36384.1| conserved hypothetical protein TIGR00250 [butyrate-producing
bacterium SM4/1]
Length = 140
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I D G+K G+A+SDP A +VRK K+ QT + I I A ++G
Sbjct: 3 IMGQDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R T +F M++R+ P + WDERLTT++A+++L++ V R+ R
Sbjct: 63 PKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKAV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AAALILQ LD
Sbjct: 122 IDKVAAALILQGYLD 136
>gi|220931424|ref|YP_002508332.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
gi|254767518|sp|B8D2B0|RUVX_HALOH RecName: Full=Putative Holliday junction resolvase
gi|219992734|gb|ACL69337.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
Length = 140
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D G +RIG+AISD A + ++RK + + I + I+G+P N
Sbjct: 3 IMGLDYGDRRIGVAISDKLGMTAQGQEVIIRKTPEEDLEVIKGLIDKYEVEEIIVGMPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS GPR TR F+ + + + + P WDERL+TV A+++LI+ +VSRKKR +D
Sbjct: 63 MDGSLGPRAEKTRDFI-DFLQKSLDTPVKVWDERLSTVEAERVLIEADVSRKKRKGVIDK 121
Query: 139 IAAALILQEVLD 150
+AA++ILQ L+
Sbjct: 122 VAASIILQGYLN 133
>gi|163816752|ref|ZP_02208115.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759]
gi|158448009|gb|EDP25004.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759]
Length = 149
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 11/142 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITT-------ENI 68
+ +D GTK +G+A+SDP A P + RK K+ QT + + I E I
Sbjct: 3 VLGLDYGTKTVGVAVSDPLEITAQPLETIERKSAGKLRQTLARIEAIIEEYGAAGQQEKI 62
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++G P NMN +EG R +T +F N ++R+ + V WDERLTTV A++IL+D V
Sbjct: 63 EKIVLGYPKNMNNTEGDRCEATVSF-KNDLERRTGLEVVLWDERLTTVEAERILMDSGVR 121
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
R+ R +D +AAA+ILQ LD
Sbjct: 122 RENRKTYIDKMAAAVILQNYLD 143
>gi|226311491|ref|YP_002771385.1| Holliday junction resolvase [Brevibacillus brevis NBRC 100599]
gi|226094439|dbj|BAH42881.1| putative Holliday junction resolvase [Brevibacillus brevis NBRC
100599]
Length = 138
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D+G K IG+A+SD A + R+ + L ++ I AF++GLP N
Sbjct: 4 LMGLDVGDKTIGVAVSDELGWTAQGVETIKRQSKEKDFARLSELVSQYQIGAFVVGLPKN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GPR +AF +++ + +P WDERLTT++A+++LI +VSR+KR +D
Sbjct: 64 MNGTIGPRAEMCQAF-GKLLEERTSLPVHMWDERLTTMAAERMLISADVSRQKRKTVIDK 122
Query: 139 IAAALILQEVLD 150
+AA LILQ LD
Sbjct: 123 MAATLILQGYLD 134
>gi|147677400|ref|YP_001211615.1| endonuclease [Pelotomaculum thermopropionicum SI]
gi|189046102|sp|A5D3C3|RUVX_PELTS RecName: Full=Putative Holliday junction resolvase
gi|146273497|dbj|BAF59246.1| predicted endonuclease [Pelotomaculum thermopropionicum SI]
Length = 154
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
I +DLG K+IG+A+SDP A + K + ++E +S + + ++GLP
Sbjct: 3 IMGLDLGDKKIGVALSDPMGWTAQGLDVIAVKGPPEASVERISELVRQYGVGKIVVGLPR 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNGS GPR RAF + + +P WDER+TT+ A+++LI+ ++SR +R Q +D
Sbjct: 63 NMNGSFGPRAERARAFAGCLAG-ALNLPVELWDERMTTLEAEKLLIEADLSRARRRQVID 121
Query: 138 SIAAALILQEVLD 150
+AA LILQ LD
Sbjct: 122 KMAAVLILQSFLD 134
>gi|223935593|ref|ZP_03627509.1| Holliday junction resolvase YqgF [bacterium Ellin514]
gi|223895601|gb|EEF62046.1| Holliday junction resolvase YqgF [bacterium Ellin514]
Length = 138
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID GTKRIGLAISD A P F++ + + L I + + ++G+P N
Sbjct: 4 ILAIDHGTKRIGLAISDELGVIAQPLEFVLAEPFANFLVRLKQLIQEKQVEMLLVGMPRN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS GP + FV + D V +P WDERLT+ A + LI +V R KR +KVD
Sbjct: 64 MDGSYGPAALKVQEFVTVLKD-SVAIPIKTWDERLTSAQANRFLIQADVRRDKRKEKVDK 122
Query: 139 IAAALILQEVLD 150
AAA++LQ LD
Sbjct: 123 TAAAILLQSYLD 134
>gi|312143794|ref|YP_003995240.1| Holliday junction resolvase YqgF [Halanaerobium sp. 'sapolanicus']
gi|311904445|gb|ADQ14886.1| Holliday junction resolvase YqgF [Halanaerobium sp. 'sapolanicus']
Length = 136
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID G KR+G+A+SD A P L + + +EL +I ++ I+G+P N
Sbjct: 3 ILGIDYGNKRVGIAVSDALGWTAQPLTTLKQHGHQELLVELRQYIEKYDVEKIIVGMPYN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS G R T+AF+ N + + +P DERLTT A+ IL++ ++SR +R +D
Sbjct: 63 MDGSRGKRAEITQAFI-NFLKNNLEIPVEIQDERLTTSQAENILLEADLSRSRRKDVIDK 121
Query: 139 IAAALILQEVLD 150
+AAALILQ LD
Sbjct: 122 LAAALILQSYLD 133
>gi|315645822|ref|ZP_07898943.1| Holliday junction resolvase YqgF [Paenibacillus vortex V453]
gi|315278583|gb|EFU41897.1| Holliday junction resolvase YqgF [Paenibacillus vortex V453]
Length = 137
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I +D G +RIG+AISD A + R++ + + + + + ++GLP
Sbjct: 2 KKIMGLDYGDRRIGVAISDVFGWTAQGVEVIERRRDEGELVRIATLVKENEVGEVVVGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR F N + + +P WDERL+TVSA++ L++ +VSRKKR Q V
Sbjct: 62 KNMNGTIGPRGEICMEFA-NTLRESLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQVV 120
Query: 137 DSIAAALILQEVLD 150
D +AA+LILQ LD
Sbjct: 121 DKMAASLILQNYLD 134
>gi|284048258|ref|YP_003398597.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
20731]
gi|283952479|gb|ADB47282.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
20731]
Length = 139
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 78/132 (59%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +DLGT+ IG+++SD A + RK + L + E + F++G P N
Sbjct: 3 IMGLDLGTRTIGVSVSDETGFIARGVETIRRKGLENDLKRLGELVEQEEVGQFVLGYPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNGS G R ++ F + +R +P V WDERL+TV+A+++LI+ ++ RKKR + +D
Sbjct: 63 MNGSIGDRARASEEFKTILEERFPSIPVVLWDERLSTVAAEKVLIEADLQRKKRKKIIDM 122
Query: 139 IAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 123 MAAVVILQNYLD 134
>gi|258645601|ref|ZP_05733070.1| putative Holliday junction resolvase [Dialister invisus DSM 15470]
gi|260402959|gb|EEW96506.1| putative Holliday junction resolvase [Dialister invisus DSM 15470]
Length = 142
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 79/136 (58%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I S+D+G++ IG+A+SD A + + + L N+ F+IG+PLN
Sbjct: 3 IMSLDVGSQTIGVAVSDLFGWTAQGVETIRHTTREKDFVRLRHLADEYNVEEFVIGMPLN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG++G R T F + +P+ FWDERLTTV AQ+ LI+ +VSRKKR + +D
Sbjct: 63 MNGTKGMRAEQTEKFAEALAAAFPDIPYHFWDERLTTVMAQRQLIEADVSRKKRKKVIDK 122
Query: 139 IAAALILQEVLDRISF 154
+AA +IL+ L +SF
Sbjct: 123 MAAVVILEGYLQHLSF 138
>gi|160947667|ref|ZP_02094834.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270]
gi|158446801|gb|EDP23796.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270]
Length = 148
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G + IG+A+SDP A + R+ + + L + I ENI ++GLP NMN
Sbjct: 13 ALDVGDRTIGVAVSDPLFIMAEGYSTIFRESIEKDLESLKNIIVKENIIKVVVGLPKNMN 72
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPF----VFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ GP+ +FV + D V F V DERLTTVSA++ILI+ N+SRKKR + +
Sbjct: 73 NTIGPQGEKVLSFVDELKDFLVKNSFDIEIVMQDERLTTVSAERILIEGNMSRKKRKKVI 132
Query: 137 DSIAAALILQEVLDR 151
D +AA ILQ LDR
Sbjct: 133 DKVAATYILQSYLDR 147
>gi|329113628|ref|ZP_08242406.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001]
gi|326697035|gb|EGE48698.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001]
Length = 154
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L + DLV +L + + ID G K++GLA+SD R A P + R K+ Q A +
Sbjct: 1 MTLLSLTDLVATLPRHARLLGIDPGKKQVGLALSDVSRMVASPFQTVKRGKLGQMASFIR 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
T I ++G+PL+++GS GP ++R + + + + +P WDERL++ + +
Sbjct: 61 DLATEHEIGGMVVGIPLSLDGSFGPAAQASRDWALALSE-QTGLPVCQWDERLSSSAVNR 119
Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152
+LID ++SR +R + VD +AAA ILQ LD +
Sbjct: 120 MLIDEADLSRARRAEMVDRLAAAYILQAALDSL 152
>gi|261405445|ref|YP_003241686.1| Holliday junction resolvase YqgF [Paenibacillus sp. Y412MC10]
gi|261281908|gb|ACX63879.1| Holliday junction resolvase YqgF [Paenibacillus sp. Y412MC10]
Length = 137
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I +D G +RIG+AISD A + R++ + + + + ++GLP
Sbjct: 2 KKIMGLDYGDRRIGVAISDAFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR F N + + +P WDERL+TVSA++ L++ +VSRKKR Q V
Sbjct: 62 KNMNGTIGPRGEICMEFA-NTLRESLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQVV 120
Query: 137 DSIAAALILQEVLD 150
D +AA+LILQ LD
Sbjct: 121 DKMAASLILQNYLD 134
>gi|239627761|ref|ZP_04670792.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517907|gb|EEQ57773.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 150
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
N I +D G+K +G+A+ DP A + RK K+ QT + + I I +
Sbjct: 2 NMRIMGLDFGSKTVGVAVCDPLGITAQTVETITRKDENKLRQTLARIEALIGQYEIERIV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P NMN + G R T F ++R+ +P V WDERLTTV+A ++LI+ V R+ R
Sbjct: 62 LGYPKNMNNTLGERAVKTEEF-KTSLERRTGLPVVLWDERLTTVAASRVLIESGVRREHR 120
Query: 133 IQKVDSIAAALILQEVLDRIS 153
+ VD IAAA+ILQ LD +S
Sbjct: 121 KESVDQIAAAMILQGYLDSLS 141
>gi|148657331|ref|YP_001277536.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1]
gi|226731646|sp|A5UY83|RUVX_ROSS1 RecName: Full=Putative Holliday junction resolvase
gi|148569441|gb|ABQ91586.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1]
Length = 141
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 86/136 (63%), Gaps = 9/136 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPL 77
+ ++D+G +RIG+A+SDP R A P +R TAL+ +L+ I + A ++GLPL
Sbjct: 8 VMALDVGERRIGVALSDPTRMLASPL-TTIRAVPRSTALKRILTLIRDYQVTALVVGLPL 66
Query: 78 NMNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
MNG GP+ + FV + ID +P F DERLTTV+A++++ID+ + ++R
Sbjct: 67 TMNGDIGPQATLVQQFVDELRPLID----IPIFFVDERLTTVAAERMMIDLKIKPEQRRA 122
Query: 135 KVDSIAAALILQEVLD 150
++D +AA++ILQ+ LD
Sbjct: 123 RIDEVAASIILQDFLD 138
>gi|315303254|ref|ZP_07873898.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596]
gi|313628366|gb|EFR96855.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596]
Length = 138
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 82/134 (61%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP G + +K Q E + + E + ++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYERVKELVLEYEVEKVVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +
Sbjct: 63 KNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKLAAVMILQSYLD 135
>gi|167462225|ref|ZP_02327314.1| hypothetical protein Plarl_06660 [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322382969|ref|ZP_08056801.1| Holliday junction resolvase-like protein [Paenibacillus larvae
subsp. larvae B-3650]
gi|321153089|gb|EFX45547.1| Holliday junction resolvase-like protein [Paenibacillus larvae
subsp. larvae B-3650]
Length = 136
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D G + IG+A+SD A + RKK + + I ++ ++GLP NMN
Sbjct: 5 GLDYGDRTIGVAVSDLLGLTAQGVEVIRRKKQEEDLARIGELIREYEVSELVVGLPKNMN 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ GPR + F ++ R+ +P WDERLTTVSA + L++ +VSRKKR Q VD +A
Sbjct: 65 GTIGPRGELCQEFA-GLLKRQFGLPVHLWDERLTTVSATRTLLEADVSRKKRKQVVDKMA 123
Query: 141 AALILQEVLD 150
AALILQ +D
Sbjct: 124 AALILQGYMD 133
>gi|331085955|ref|ZP_08335038.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330406878|gb|EGG86383.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 151
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 79/143 (55%), Gaps = 4/143 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+AISDP A + RK K+ +T + + + + ++G
Sbjct: 3 IMGLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLGF 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R + F M++R+ +P WDERLTTV A++ LI+ NV R+ R +
Sbjct: 63 PKNMNNTVGDRAEKSLEF-KEMLERRTALPVTMWDERLTTVEAERTLIENNVRREDRKKY 121
Query: 136 VDSIAAALILQEVLDRISFLESS 158
VD IAA ILQ LD + F + S
Sbjct: 122 VDKIAAVFILQGYLDSVYFRQKS 144
>gi|269798239|ref|YP_003312139.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008]
gi|282850477|ref|ZP_06259856.1| RNAse YqgF [Veillonella parvula ATCC 17745]
gi|269094868|gb|ACZ24859.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008]
gi|282579970|gb|EFB85374.1| RNAse YqgF [Veillonella parvula ATCC 17745]
Length = 139
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 1/136 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I S+D+G++ IG+A SD A + R + + L I+ + ++G+P N
Sbjct: 3 IMSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELISEYEVHELVVGMPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG++G R T FV M + + +P +WDERL+TV A++ LI +VSRKKR +D
Sbjct: 63 MNGTKGERAEKTEEFVAKMKE-VIDLPVTYWDERLSTVMAERQLIAADVSRKKRKSVIDK 121
Query: 139 IAAALILQEVLDRISF 154
+AA +ILQ LDR+ F
Sbjct: 122 MAAVVILQGYLDRLQF 137
>gi|227499548|ref|ZP_03929655.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
ATCC 35098]
gi|227218307|gb|EEI83561.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
ATCC 35098]
Length = 139
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 79/133 (59%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+A+SDP A+ + RK + L I ++ ++GLP N
Sbjct: 4 IMGLDVGNKTIGVALSDPMFLLANGLETIKRKNASSDIERLREIINDNDVELIVVGLPKN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GP+ +FV ++I ++V + V+ DER+TT+ ++ +LIDM+V R+ R + +D
Sbjct: 64 MNNTIGPQAMRVMSFV-DLIKKQVDIEIVYQDERMTTIQSEAVLIDMDVRRENRKKYIDK 122
Query: 139 IAAALILQEVLDR 151
IAA ILQ LDR
Sbjct: 123 IAATFILQTYLDR 135
>gi|309389102|gb|ADO76982.1| Holliday junction resolvase YqgF [Halanaerobium praevalens DSM
2228]
Length = 135
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 80/134 (59%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID G KR+G+A+SD A P L + +E+ +I ++ I+G+P N
Sbjct: 3 ILGIDYGNKRVGIAVSDALGWTAQPLVTLKMNGHQKLLVEIKKYIDKYDVEKIIVGMPYN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++GS G R T+AF+ N ++ ++ +P DERLTT AQ IL++ +VSR+ R + +D
Sbjct: 63 LDGSRGKRAEITQAFI-NFLNNQLEIPIQIQDERLTTKQAQNILLEADVSRQGRKKVIDK 121
Query: 139 IAAALILQEVLDRI 152
+AA+LILQ LD +
Sbjct: 122 LAASLILQSYLDSL 135
>gi|238018987|ref|ZP_04599413.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748]
gi|313892893|ref|ZP_07826470.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158
str. F0412]
gi|237864471|gb|EEP65761.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748]
gi|313442246|gb|EFR60661.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158
str. F0412]
Length = 139
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I S+D+G++ IG+A SD A + R + + L I + ++G+P N
Sbjct: 3 IMSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELIAEYEVHELVVGMPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG++G R T FV M + + +P +WDERL+TV A++ LI +VSRKKR +D
Sbjct: 63 MNGTKGERAEKTEEFVEKMKE-VIDLPVSYWDERLSTVMAERQLIAADVSRKKRKSVIDK 121
Query: 139 IAAALILQEVLDRISF 154
+AA +ILQ LDR+ F
Sbjct: 122 MAAVVILQGYLDRLQF 137
>gi|329926758|ref|ZP_08281166.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF5]
gi|328938958|gb|EGG35326.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF5]
Length = 137
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I +D G +RIG+AISD A + R++ + + + + ++GLP
Sbjct: 2 KKIMGLDYGDRRIGVAISDVFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR F N + + +P WDERL+TVSA++ L++ +VSRKKR Q V
Sbjct: 62 KNMNGTIGPRGEICMEFA-NTLRESLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQVV 120
Query: 137 DSIAAALILQEVLD 150
D +AA+LILQ LD
Sbjct: 121 DKMAASLILQNYLD 134
>gi|160895347|ref|ZP_02076118.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
gi|156863040|gb|EDO56471.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
Length = 165
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
N I +D GTK +G+A+SD A P + RK K+ QT + S I +
Sbjct: 20 NMRIIGLDYGTKTVGVAVSDALMITAQPLETIERKSANKLRQTLARIESIIEEYQAERIV 79
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P NMN + G R +T F ++ +R+ + + WDERL+TV A++IL+D V R+ R
Sbjct: 80 LGYPKNMNNTIGERAEATEQFKEDL-ERRTGLEVILWDERLSTVEAERILMDTGVRRENR 138
Query: 133 IQKVDSIAAALILQEVLD 150
Q VD +AAA+ILQ LD
Sbjct: 139 KQYVDKMAAAVILQNYLD 156
>gi|153953951|ref|YP_001394716.1| Holliday junction resolvase-like protein [Clostridium kluyveri DSM
555]
gi|219854565|ref|YP_002471687.1| hypothetical protein CKR_1222 [Clostridium kluyveri NBRC 12016]
gi|189046093|sp|A5N7T7|RUVX_CLOK5 RecName: Full=Putative Holliday junction resolvase
gi|254767509|sp|B9E198|RUVX_CLOK1 RecName: Full=Putative Holliday junction resolvase
gi|146346832|gb|EDK33368.1| Predicted Holliday junction resolvase [Clostridium kluyveri DSM
555]
gi|219568289|dbj|BAH06273.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 137
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+A+SDP A + RK + EL + + + GLP N
Sbjct: 3 ILGLDIGNKTIGVALSDPLGITAQGITTIKRKGEDRDIEELKAICDKYKVEVIVCGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP+ F N+I+ + +P WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 63 MNGTLGPQSEKVLKFC-NIIEEVINLPIKMWDERLTTVAANKAMLEADLSRAKRKKIVDK 121
Query: 139 IAAALILQEVLDRIS 153
+AA ILQ LDRIS
Sbjct: 122 MAATYILQGYLDRIS 136
>gi|303229331|ref|ZP_07316121.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-134-V-Col7a]
gi|302515867|gb|EFL57819.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-134-V-Col7a]
Length = 140
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G++ IG+A SD A + R + L I+ + ++G+P N
Sbjct: 3 IMALDVGSRTIGIACSDALLMTAQGIETIRRTSLENDFNRLRELISEYEVHELVVGMPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
MNG++G R T FV M ID +P FWDERL+TV A++ LI +VSRKKR
Sbjct: 63 MNGTKGERAEKTEEFVEKMKAVID----LPVTFWDERLSTVMAERQLIAADVSRKKRKGV 118
Query: 136 VDSIAAALILQEVLDRISFLES 157
+D +AA +ILQ LDR+ F +S
Sbjct: 119 IDKMAAVVILQGYLDRLQFSKS 140
>gi|259046501|ref|ZP_05736902.1| Holliday junction resolvase [Granulicatella adiacens ATCC 49175]
gi|259036666|gb|EEW37921.1| Holliday junction resolvase [Granulicatella adiacens ATCC 49175]
Length = 144
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 88/139 (63%), Gaps = 4/139 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISD-PGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFI 72
PN + +D+G+K +G+A+SD G + +K ++ + ++ + + +
Sbjct: 2 PNMRLMGLDVGSKTVGVAVSDLMGWTAQGVETIPINEKASEFGFKRVVELVEEYGVEKIV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKK 131
IGLP NMN +EGPRV ++R + + +++++ +P VF DERLTT+ A+++L++ NVSRKK
Sbjct: 62 IGLPKNMNNTEGPRVEASRRYGAS-LEKRLQIPIVFHDERLTTMQAERMLVEEGNVSRKK 120
Query: 132 RIQKVDSIAAALILQEVLD 150
R Q +D +AA +ILQ LD
Sbjct: 121 RKQVIDMLAAVMILQNYLD 139
>gi|303230717|ref|ZP_07317464.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-049-V-Sch6]
gi|302514477|gb|EFL56472.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-049-V-Sch6]
Length = 140
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G++ IG+A SD A + R + L I+ + ++G+P N
Sbjct: 3 IMALDVGSRTIGIACSDALLMTAQGIETIRRTSLENDFNRLRELISEYEVHELVVGMPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
MNG++G R T FV M ID +P FWDERL+TV A++ LI +VSRKKR
Sbjct: 63 MNGTKGDRAEKTEEFVEKMKAVID----LPVTFWDERLSTVMAERQLIAADVSRKKRKGV 118
Query: 136 VDSIAAALILQEVLDRISFLES 157
+D +AA +ILQ LDR+ F +S
Sbjct: 119 IDKMAAVVILQGYLDRLQFSKS 140
>gi|294792100|ref|ZP_06757248.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27]
gi|294793971|ref|ZP_06759108.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44]
gi|294455541|gb|EFG23913.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44]
gi|294457330|gb|EFG25692.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27]
Length = 136
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+D+G++ IG+A SD A + R + + L I+ + ++G+P NMN
Sbjct: 2 SLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELISEYEVHELVVGMPKNMN 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G++G R T FV M + + +P +WDERL+TV A++ LI +VSRKKR +D +A
Sbjct: 62 GTKGERAEKTEEFVAKMKE-VIDLPVTYWDERLSTVMAERQLIAADVSRKKRKSVIDKMA 120
Query: 141 AALILQEVLDRISF 154
A +ILQ LDR+ F
Sbjct: 121 AVVILQGYLDRLQF 134
>gi|56963359|ref|YP_175090.1| holliday junction resolvase [Bacillus clausii KSM-K16]
gi|62900942|sp|Q5WHM6|RUVX_BACSK RecName: Full=Putative Holliday junction resolvase
gi|56909602|dbj|BAD64129.1| holliday junction resolvase [Bacillus clausii KSM-K16]
Length = 142
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-QTALELLSFITTEN-IAAFIIGLPLN 78
+D+GTK IG+AISD A P + R + E L+ + EN + +IG P N
Sbjct: 5 GLDVGTKTIGVAISDAFGWTAQGLPTIQRSEDDPNRDFEALAQLIKENDVQKVVIGYPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G + F + +++ V V WDERLTT +AQ++LID +VSRKKR + VD
Sbjct: 65 MNGTVGESATRSETFARTL-EQQCNVQTVLWDERLTTAAAQRVLIDADVSRKKRKKAVDK 123
Query: 139 IAAALILQEVLDRIS 153
+AA ILQ LDR S
Sbjct: 124 MAAVFILQGYLDRQS 138
>gi|329117501|ref|ZP_08246218.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD
2020]
gi|326907906|gb|EGE54820.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD
2020]
Length = 139
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 84/140 (60%), Gaps = 10/140 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
I +D+G+K +G+AISDP A + K+ + E L + + F++
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEDKKEFGLARLEELVNQYKVDKFVV 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN S GPRV +++A+ N+I + +P + DERLTTV A+++LI+ ++SR KR
Sbjct: 60 GLPKNMNNSSGPRVEASQAY-GNLIQEQFNIPVEYQDERLTTVQAERMLIEQADISRGKR 118
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDRI
Sbjct: 119 KKVIDKLAAQLILQNYLDRI 138
>gi|325662158|ref|ZP_08150776.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA]
gi|325471607|gb|EGC74827.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA]
Length = 148
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 4/141 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLPL 77
+D G+K +G+AISDP A + RK K+ +T + + + + ++G P
Sbjct: 2 GLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLGFPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + G R + F M++R+ +P WDERLTTV A++ LI+ NV R+ R + VD
Sbjct: 62 NMNNTVGDRAEKSLEF-KEMLERRTALPVTMWDERLTTVEAERTLIENNVRREDRKKYVD 120
Query: 138 SIAAALILQEVLDRISFLESS 158
IAA ILQ LD + F + S
Sbjct: 121 KIAAVFILQGYLDSVYFRQKS 141
>gi|149918360|ref|ZP_01906851.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1]
gi|149820886|gb|EDM80295.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1]
Length = 156
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 81/136 (59%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G+K IGLA+SD G AH R L R+ + +L+ + + A ++GLPL
Sbjct: 3 VLALDVGSKTIGLAVSDVGGSMAHAREVLRRQGHKLDSAAVLALASELEVRALVVGLPLE 62
Query: 79 MNGSEGPRVHSTRAFVHNM----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
++GSEG R R F+ + + + +P WDER +T +A++ L++ +VSR KR Q
Sbjct: 63 LDGSEGHRARLVRRFLKVLEAAIAEAERALPVHTWDERYSTAAAERTLLEADVSRAKRKQ 122
Query: 135 KVDSIAAALILQEVLD 150
+D++AA ILQ LD
Sbjct: 123 NIDAVAAQFILQGWLD 138
>gi|115375305|ref|ZP_01462569.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|310823720|ref|YP_003956078.1| holliday junction resolvase [Stigmatella aurantiaca DW4/3-1]
gi|115367678|gb|EAU66649.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|309396792|gb|ADO74251.1| Holliday junction resolvase [Stigmatella aurantiaca DW4/3-1]
Length = 150
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLGTK IG+A+SD A + R + L + ++GLPLNM+
Sbjct: 5 GLDLGTKTIGVAVSDGLGLTAQALTTVRRTNLKADLAALAELAREHEASRIVLGLPLNMD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEGPR ++R F + + + +++P FWDERL+TV+A++ L++ +++R KR Q +D +A
Sbjct: 65 GSEGPRAEASRKFA-DALGQALHLPVEFWDERLSTVAAERTLLEADLTRAKRKQVIDQMA 123
Query: 141 AALILQEVLD 150
A ILQ LD
Sbjct: 124 AQFILQGWLD 133
>gi|313633177|gb|EFS00059.1| putative Holliday junction resolvase [Listeria seeligeri FSL
N1-067]
gi|313637761|gb|EFS03116.1| putative Holliday junction resolvase [Listeria seeligeri FSL
S4-171]
Length = 138
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 82/134 (61%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP G + +K Q + + + E + ++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +
Sbjct: 63 KNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKLAAVMILQSYLD 135
>gi|320547640|ref|ZP_08041925.1| crossover junction endodeoxyribonuclease [Streptococcus equinus
ATCC 9812]
gi|320447715|gb|EFW88473.1| crossover junction endodeoxyribonuclease [Streptococcus equinus
ATCC 9812]
Length = 139
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 4/137 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+G+K +G+AISDP G + ++ + E L + N+ F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGVEIIQIDEEAGEFGFERLGELVKQYNVDKFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN +EGPRV +++A+ + I +P + DERLTTV A+++L++ +VSR KR +
Sbjct: 63 KNMNNTEGPRVEASKAY-GDQIKELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKKV 121
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 122 IDKLAAQLILQNYLDRM 138
>gi|296110666|ref|YP_003621047.1| Holliday junction resolvase-like protein [Leuconostoc kimchii IMSNU
11154]
gi|295832197|gb|ADG40078.1| Holliday junction resolvase-like protein [Leuconostoc kimchii IMSNU
11154]
Length = 143
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIA-AFIIGLP 76
I +D+G++ +G+A+SDP A + + + + LE L I + A ++GLP
Sbjct: 3 ILGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKEFGLERLGEIIKDKQAKGVVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
NMN SEGPR ++R + M+ K +P F DERLTTV A+++LI+ N+SRKKR Q
Sbjct: 63 KNMNNSEGPRAEASRLYAK-MVQDKFNLPIDFQDERLTTVQAERMLIEEANISRKKRKQV 121
Query: 136 VDSIAAALILQEVLD 150
+D IAA ILQ LD
Sbjct: 122 IDKIAAEFILQNYLD 136
>gi|323483777|ref|ZP_08089157.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
WAL-14163]
gi|323692750|ref|ZP_08106978.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
WAL-14673]
gi|323402968|gb|EGA95286.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
WAL-14163]
gi|323503192|gb|EGB19026.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
WAL-14673]
Length = 163
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
+ +D G+K G+A+SDP A + R+ K+ +T + I I ++G
Sbjct: 17 VLGLDFGSKTTGVAVSDPLGFTAQGLETITREDENKLRRTCARIEELIREYQIETIVLGY 76
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G RV T AF M++R+ + + WDERLTT +A+QILI+ V R+ R
Sbjct: 77 PKNMNNTSGERVEKTLAF-KEMLERRTGLSVILWDERLTTTAAEQILIESGVRRENRKAV 135
Query: 136 VDSIAAALILQEVLDRISF 154
+D +AA+LILQ LD ++
Sbjct: 136 IDKVAASLILQGYLDSLAI 154
>gi|258543587|ref|YP_003189020.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-01]
gi|256634665|dbj|BAI00641.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-01]
gi|256637721|dbj|BAI03690.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-03]
gi|256640775|dbj|BAI06737.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-07]
gi|256643830|dbj|BAI09785.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-22]
gi|256646885|dbj|BAI12833.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-26]
gi|256649938|dbj|BAI15879.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-32]
gi|256652928|dbj|BAI18862.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655982|dbj|BAI21909.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-12]
Length = 154
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L + DLV +L + + ID G K++GLA+SD R A P + R K+ Q A +
Sbjct: 1 MTLLSLTDLVATLPRHARLLGIDPGKKQVGLALSDVSRMVASPFQTVKRGKLGQMASFIR 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I ++G+PL+++GS GP ++R + + + + +P WDERL++ + +
Sbjct: 61 DLAKEHEIGGMVVGIPLSLDGSFGPAAQASRDWALALSE-QTGLPVCQWDERLSSSAVNR 119
Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152
+LID ++SR +R + VD +AAA ILQ LD +
Sbjct: 120 MLIDEADLSRARRAEMVDRLAAAYILQAALDSL 152
>gi|221632739|ref|YP_002521960.1| hypothetical protein trd_0729 [Thermomicrobium roseum DSM 5159]
gi|221156262|gb|ACM05389.1| conserved hypothetical protein TIGR00250 [Thermomicrobium roseum
DSM 5159]
Length = 161
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 5/131 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
+D+G +R+G+AISD A P L + + LE L+ I+ + ++GLP+ M
Sbjct: 11 GLDVGGRRVGVAISDEMGMIASP---LATIDLDRDGLERLVELISRYDPVLIVVGLPVTM 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G EG + T+AF + +R + P VFWDERLT+ +A+++L D V RK+R + VD++
Sbjct: 68 RGREGSQAVETKAFAARLAER-IDRPIVFWDERLTSSAAERLLTDAGVGRKRRRELVDAV 126
Query: 140 AAALILQEVLD 150
AAAL+LQ LD
Sbjct: 127 AAALLLQSYLD 137
>gi|289434782|ref|YP_003464654.1| holliday junction resolvase, putative [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289171026|emb|CBH27568.1| holliday junction resolvase, putative [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 135
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+AISDP G + +K Q + + + E + ++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 62 MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEVIDK 120
Query: 139 IAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 121 LAAVMILQSYLD 132
>gi|108758109|ref|YP_633960.1| hypothetical protein MXAN_5823 [Myxococcus xanthus DK 1622]
gi|118597216|sp|Q1D063|RUVX_MYXXD RecName: Full=Putative Holliday junction resolvase
gi|108461989|gb|ABF87174.1| conserved hypothetical protein TIGR00250 [Myxococcus xanthus DK
1622]
Length = 151
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 3/131 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79
+DLGTK IG+A+SD G VR+ + L L+ + +E+ + ++GLPLNM
Sbjct: 5 GLDLGTKTIGVAVSD-GLGLTAQGITTVRRTSLKADLAALATVASEHEVTHVVLGLPLNM 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GSEGPR ++R F + + + + V WDERL+TV+A + L++ +VSR +R + +D +
Sbjct: 64 DGSEGPRAEASRKFA-DTLAQSLGVTVELWDERLSTVAATRTLLEADVSRARRREVIDQV 122
Query: 140 AAALILQEVLD 150
AA ILQ LD
Sbjct: 123 AAQFILQGWLD 133
>gi|256545147|ref|ZP_05472513.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170]
gi|256399188|gb|EEU12799.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170]
Length = 139
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +DLG K IG+A+SDP A + RKK + +L+ I + + IIGLP N
Sbjct: 4 IMGLDLGDKTIGVALSDPFFITAQAYITIKRKKASLDIEKLIEIINEKEVNLIIIGLPKN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GP+ +FV +++ + + + DER+TT+ + Q+L+DMNV+ K R + VD
Sbjct: 64 MNNTLGPQAMKVISFV-DLLKKSTDIEIKYQDERMTTIQSDQVLMDMNVNLKDRKKYVDK 122
Query: 139 IAAALILQEVLD 150
IAA+ ILQ LD
Sbjct: 123 IAASFILQTYLD 134
>gi|291522741|emb|CBK81034.1| conserved hypothetical protein TIGR00250 [Coprococcus catus GD/7]
Length = 155
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 4/142 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+A+SDP A + RK K+ +T + + I ++G
Sbjct: 5 IIGLDYGSKTVGVAVSDPLGFTAQGLETITRKDENKLRKTYARIEALIREYEAEQIVLGY 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN +EG RV T AF ++R+ + + WDER++TV+++++L++ NV R+ R
Sbjct: 65 PKNMNDTEGERVEKTLAF-KEALERRTGLEVILWDERMSTVASERVLMEGNVRREDRKTY 123
Query: 136 VDSIAAALILQEVLDRISFLES 157
+D +AAA ILQ LD SF E+
Sbjct: 124 IDKMAAAFILQGYLDYQSFSEN 145
>gi|116626054|ref|YP_828210.1| Holliday junction resolvase YqgF [Candidatus Solibacter usitatus
Ellin6076]
gi|116229216|gb|ABJ87925.1| Holliday junction resolvase YqgF [Candidatus Solibacter usitatus
Ellin6076]
Length = 140
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++DLG +RIGLAISDP R A P LVR ++ L + + ++G P+N
Sbjct: 8 ILALDLGKRRIGLAISDPLRITAQGLPNLVRTRIRDDLDALEQLVKEREVGLVLLGNPIN 67
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M G+EG + R F M +++ VP WDERLT+V A ++L +S +KR VD
Sbjct: 68 MKGTEGRQSGWVREFATAM-EKRTGVPVKLWDERLTSVEAGRVLRSSGISIEKRAAAVDK 126
Query: 139 IAAALILQEVLD 150
++A ++LQ LD
Sbjct: 127 LSAVILLQSYLD 138
>gi|297584728|ref|YP_003700508.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10]
gi|297143185|gb|ADH99942.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10]
Length = 138
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLP 76
I +D+GTK IG+A+SDP A RKK + ++ + E ++GLP
Sbjct: 3 IIGLDVGTKTIGIAVSDPFGWTAQGVETHRRKKGKENEDVQRIVDLVEEEGAEQIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP +AF ++ +P + WDERLTT +A++ LI +VSRKKR +
Sbjct: 63 KNMNGTIGPSGELCQAFAESL-KEATGLPVILWDERLTTAAAEKTLISADVSRKKRKNVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA ILQ LD
Sbjct: 122 DKMAAVFILQGYLD 135
>gi|225387769|ref|ZP_03757533.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
DSM 15981]
gi|225046130|gb|EEG56376.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
DSM 15981]
Length = 151
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 4/139 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+A+ DP A +VRK K+ +T + I I ++G
Sbjct: 3 IMGLDYGSKTVGVAVCDPLGITAQTVETIVRKDENKLRKTLARIEELIGAYEIERIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R ++R+ +P + WDERLTTV+A ++L++ V R+ R +
Sbjct: 63 PKNMNNTVGERAQKAEEL-KAALERRTGLPVILWDERLTTVAADRVLMESGVRREHRKES 121
Query: 136 VDSIAAALILQEVLDRISF 154
VD IAAA+ILQ LD +SF
Sbjct: 122 VDQIAAAMILQGYLDNLSF 140
>gi|116872931|ref|YP_849712.1| holliday junction resolvase, putative [Listeria welshimeri serovar
6b str. SLCC5334]
gi|116741809|emb|CAK20933.1| holliday junction resolvase, putative [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 135
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+AISDP G + +K Q + + + E + ++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 62 MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDK 120
Query: 139 IAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 121 LAAVMILQSYLD 132
>gi|220929652|ref|YP_002506561.1| Holliday junction resolvase-like protein [Clostridium
cellulolyticum H10]
gi|254767508|sp|B8I4S7|RUVX_CLOCE RecName: Full=Putative Holliday junction resolvase
gi|219999980|gb|ACL76581.1| Holliday junction resolvase YqgF [Clostridium cellulolyticum H10]
Length = 142
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
I ID G RIG+AISDP A + K + A+ LS I E ++ +IG P+
Sbjct: 3 ILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKDSLKKAVLRLSEIINEYSVTDIVIGYPI 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG++GPR T F+ + D + + WDERLTTVSA + + ++ + K+ VD
Sbjct: 63 NMNGTKGPRTERTEEFIKKISDLGQF-NIIKWDERLTTVSAHRTMNELGIKASKKKGIVD 121
Query: 138 SIAAALILQEVLDRIS 153
+++A LILQ LDRI+
Sbjct: 122 TMSAVLILQGYLDRIA 137
>gi|58040808|ref|YP_192772.1| DNA integration/recombination/invertion protein [Gluconobacter
oxydans 621H]
gi|62900900|sp|Q5FND1|RUVX_GLUOX RecName: Full=Putative Holliday junction resolvase
gi|58003222|gb|AAW62116.1| DNA integration/recombination/invertion protein [Gluconobacter
oxydans 621H]
Length = 160
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 85/144 (59%), Gaps = 2/144 (1%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
DL L+ Q + +D G+K IG+A++D A P L R+K+ + A EL + T++
Sbjct: 8 DLRNLLQSGQRVLGLDPGSKTIGVALTDVSLMLASPLIGLKRRKLGENAQELAKIVRTQD 67
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMN 126
+ A ++GLPL+++GS GP + + + K+ +P WDERL++ + + LI D +
Sbjct: 68 VGALVVGLPLSLDGSFGPAARAASDWTQ-ALSEKLGIPAGLWDERLSSSAVNRFLIKDAD 126
Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
++R +R + VD +AAA +LQ LD
Sbjct: 127 MTRGRRAEVVDKMAAAYMLQGWLD 150
>gi|311031560|ref|ZP_07709650.1| Holliday junction resolvase-like protein [Bacillus sp. m3-13]
Length = 138
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 84/138 (60%), Gaps = 11/138 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA------FI 72
I +D+G+K +G+AISD L K+ + A++ L F + I A +
Sbjct: 3 ILGLDVGSKTVGVAISD---EMGWTAQGLETIKIDE-AIKNLGFKRLKQIIAEYKPEKVV 58
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP NMNGS GPR +++ + M+ K +P ++WDERL+TV+A++IL+ +VSRKKR
Sbjct: 59 VGLPKNMNGSIGPRGEASKHY-GEMLTAKTGLPVIYWDERLSTVAAERILLSADVSRKKR 117
Query: 133 IQKVDSIAAALILQEVLD 150
Q +D +AA +ILQ LD
Sbjct: 118 KQVIDKMAAVVILQGYLD 135
>gi|309791342|ref|ZP_07685865.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6]
gi|308226652|gb|EFO80357.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6]
Length = 148
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 79/137 (57%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
Q + +D+G +RIG+A+SD A P + +Q + + + ++GL
Sbjct: 3 EQRLLGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAITMIARLVREHEVQGIVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL + G GP+ TR+F + +R+V +P + +DER TT A+Q+L +M V +KR Q+
Sbjct: 63 PLTLRGEIGPQAEQTRSFAQEL-ERQVGLPVMLFDERYTTTVAEQLLREMGVKPEKRKQQ 121
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA++ILQ+ LD I
Sbjct: 122 IDQVAASIILQDYLDHI 138
>gi|258592801|emb|CBE69110.1| putative Holliday junction resolvase [NC10 bacterium 'Dutch
sediment']
Length = 144
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q ID GTKRIG+AISD A P P L + + I ++GLP
Sbjct: 2 QRYLGIDFGTKRIGVAISDELGLTAQPLPTLEPSTDEAAVRAIREIMDQYGILDVVVGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP AF ++ V WDERLT+++A+++LI+ ++SR KR ++V
Sbjct: 62 KNMNGTLGPSAERALAFA-GQLEEGGSVKVTMWDERLTSLAAERLLIEADLSRAKRKRRV 120
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 121 DQMAAVLILQGFLDR 135
>gi|56416955|ref|YP_154029.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries]
gi|222475321|ref|YP_002563738.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Florida]
gi|56388187|gb|AAV86774.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries]
gi|222419459|gb|ACM49482.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Florida]
Length = 164
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
IE +L ++ I +D G K+ GLA+SD A P +R+ V Q EL + +
Sbjct: 13 IESFFGALGADRRILGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELNAILKR 72
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
E I A ++GLPL ++G EG R+FV +I +K V DER TT A + +
Sbjct: 73 EGICAAVVGLPLQLDGMEGEMCAVVRSFVQKLI-KKSGVYVYLHDERFTTAMASRTTESL 131
Query: 126 NVSRKKRIQKVDS-IAAALILQEVLD 150
+ R+K QKVD I+AALILQ+VLD
Sbjct: 132 GL-RRKASQKVDDKISAALILQQVLD 156
>gi|154686879|ref|YP_001422040.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens FZB42]
gi|308174438|ref|YP_003921143.1| Holliday junction resolvase [Bacillus amyloliquefaciens DSM 7]
gi|167012691|sp|A7Z733|RUVX_BACA2 RecName: Full=Putative Holliday junction resolvase
gi|154352730|gb|ABS74809.1| YrrK [Bacillus amyloliquefaciens FZB42]
gi|307607302|emb|CBI43673.1| putative Holliday junction resolvase [Bacillus amyloliquefaciens
DSM 7]
Length = 138
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 83/137 (60%), Gaps = 3/137 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +DLGTK +G+A+SD G + + L+ LS + + N+ ++G P
Sbjct: 3 ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGFP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR + +
Sbjct: 63 KNMNGTIGPRGEASQTFAK-LLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD ++
Sbjct: 122 DKMAAVMILQGYLDSLN 138
>gi|254995134|ref|ZP_05277324.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Mississippi]
gi|255003304|ref|ZP_05278268.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Puerto Rico]
gi|255004430|ref|ZP_05279231.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Virginia]
gi|62900915|sp|Q5PAA6|RUVX_ANAMM RecName: Full=Putative Holliday junction resolvase
Length = 157
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
IE +L ++ I +D G K+ GLA+SD A P +R+ V Q EL + +
Sbjct: 6 IESFFGALGADRRILGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELNAILKR 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
E I A ++GLPL ++G EG R+FV +I +K V DER TT A + +
Sbjct: 66 EGICAAVVGLPLQLDGMEGEMCAVVRSFVQKLI-KKSGVYVYLHDERFTTAMASRTTESL 124
Query: 126 NVSRKKRIQKVDS-IAAALILQEVLD 150
+ R+K QKVD I+AALILQ+VLD
Sbjct: 125 GL-RRKASQKVDDKISAALILQQVLD 149
>gi|304407567|ref|ZP_07389219.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus
YK9]
gi|304343518|gb|EFM09360.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus
YK9]
Length = 138
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D G + IG+A+SD A + R+ E+ + + ++GLP N
Sbjct: 3 IMGLDYGDRNIGVAVSDAFGWTAQGTGVVQRRHNRGEFDEIAQLVKDHEVTEIVVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNGS GPR AF + +K+ +P WDERLTTVSA++ L++ +VSRKKR VD
Sbjct: 63 MNGSVGPRGEICIAFAEEL-QQKLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVVDK 121
Query: 139 IAAALILQEVLD 150
+AA ILQ LD
Sbjct: 122 LAATFILQNYLD 133
>gi|300173637|ref|YP_003772803.1| putative Holliday junction resolvase [Leuconostoc gasicomitatum LMG
18811]
gi|299888016|emb|CBL91984.1| Putative Holliday junction resolvase [Leuconostoc gasicomitatum LMG
18811]
Length = 143
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIA-AFIIGLP 76
I +D+G++ +G+++SDP A + + + + L+ L I E A + ++GLP
Sbjct: 3 ILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDENEFGLQRLGEIIKEKQAKSVVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
NMN SEGPR + R + M++ + +P F DERLTTV A+++LI+ +VSRKKR Q
Sbjct: 63 KNMNNSEGPRAEAARNYAK-MVEERFELPTDFQDERLTTVQAERMLIEEADVSRKKRKQV 121
Query: 136 VDSIAAALILQEVLD 150
+D IAA ILQ LD
Sbjct: 122 IDKIAAEFILQNYLD 136
>gi|168054242|ref|XP_001779541.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669022|gb|EDQ55617.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 171
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 4/162 (2%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALE 58
M ++ ++ L + L + +D+G++ IGLA+SDP R A P + R T +
Sbjct: 1 MELVSLKQLFQRLSSGGRLLGLDVGSRNIGLAVSDPKCRIASPHSVMYRSNTTTLKNISR 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVH--NMIDRKVYVPFVFWDERLTTV 116
L S + NI +IG PL + G +G + + F M R + +V+WDERLT+V
Sbjct: 61 LESLVQEMNITGLVIGYPLELTGFQGKQGAQVKLFAKELQMSGRFPNLAYVYWDERLTSV 120
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ ++ M+++ ++R VD ++A ILQ LD +S +E+
Sbjct: 121 AVTNVIGSMDITGRRRKNIVDKMSALCILQGCLDSLSRIENG 162
>gi|302391206|ref|YP_003827026.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM
5501]
gi|302203283|gb|ADL11961.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM
5501]
Length = 138
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D G KRIG A SD A + + + E+ S I ++ ++GLP N
Sbjct: 4 ILGLDFGDKRIGAATSDALGWTAQGKKVIQNTSWEEVVAEINSLIEQYDVGKVVVGLPKN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GPR T FV + ++ P + WDERL+T +A++ L+ +VSR KR +D
Sbjct: 64 MNGTLGPRAEKTLDFVEQL-KEEIEPPIITWDERLSTAAAERTLLKADVSRAKRKDVIDK 122
Query: 139 IAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 123 MAAVVILQSYLD 134
>gi|46907730|ref|YP_014119.1| Holliday junction resolvase-like protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47093424|ref|ZP_00231189.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
str. 4b H7858]
gi|226224103|ref|YP_002758210.1| hypothetical protein Lm4b_01512 [Listeria monocytogenes Clip81459]
gi|254824439|ref|ZP_05229440.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254852126|ref|ZP_05241474.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|254931437|ref|ZP_05264796.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|255521191|ref|ZP_05388428.1| Holliday junction resolvase-like protein [Listeria monocytogenes
FSL J1-175]
gi|300764832|ref|ZP_07074822.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|62900990|sp|Q71ZG8|RUVX_LISMF RecName: Full=Putative Holliday junction resolvase
gi|259495707|sp|C1KVE9|RUVX_LISMC RecName: Full=Putative Holliday junction resolvase
gi|46880999|gb|AAT04296.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
serotype 4b str. F2365]
gi|47018203|gb|EAL08971.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
str. 4b H7858]
gi|225876565|emb|CAS05274.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258605429|gb|EEW18037.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293582988|gb|EFF95020.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|293593675|gb|EFG01436.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|300514508|gb|EFK41565.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|328465540|gb|EGF36769.1| Holliday junction resolvase-like protein [Listeria monocytogenes
1816]
Length = 138
Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP G + + Q + + + E + ++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +
Sbjct: 63 KNMNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKLAAVMILQSYLD 135
>gi|328554357|gb|AEB24849.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens TA208]
gi|328912761|gb|AEB64357.1| Putative Holliday junction resolvase [Bacillus amyloliquefaciens
LL3]
Length = 138
Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 83/137 (60%), Gaps = 3/137 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +DLGTK +G+A+SD G + + L+ LS + + N+ ++G P
Sbjct: 3 ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGFP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR + +
Sbjct: 63 KNMNGTIGPRGEASQTFAK-LLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD ++
Sbjct: 122 DKMAAVMILQGFLDSLN 138
>gi|150015990|ref|YP_001308244.1| Holliday junction resolvase-like protein [Clostridium beijerinckii
NCIMB 8052]
gi|189046092|sp|A6LSF8|RUVX_CLOB8 RecName: Full=Putative Holliday junction resolvase
gi|149902455|gb|ABR33288.1| Holliday junction resolvase YqgF [Clostridium beijerinckii NCIMB
8052]
Length = 138
Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +DLG+K IG+A+SDP A + R + E+ F + +IGLP N
Sbjct: 3 ILGLDLGSKTIGVAVSDPLGFTAQGLTTVRRTNKEKDIAEIKKFCDEYDAKVIVIGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP AF +I+ ++ V FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 63 MNGTIGPSGEIAMAF-GKVIEEELNVEVKFWDERLTTVAAHKAMLEADLSRNKRKKIVDK 121
Query: 139 IAAALILQEVLDRIS 153
+A+ ILQ LD IS
Sbjct: 122 VASTYILQGYLDMIS 136
>gi|322374034|ref|ZP_08048568.1| putative Holliday junction resolvase [Streptococcus sp. C150]
gi|321277000|gb|EFX54071.1| putative Holliday junction resolvase [Streptococcus sp. C150]
Length = 139
Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 10/140 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
+ +D+G+K +G+AISDP A + K+ + A E L + + F++
Sbjct: 3 VMGLDVGSKTVGVAISDPLGFTAQGVEII---KIDEEAEEFGFDRLGELVKEYKVDKFVV 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN +EGPRV +++A+ N I +P + DERLTTV A+++L++ +VSR KR
Sbjct: 60 GLPKNMNNTEGPRVEASKAY-GNKIKEIFGIPVDYQDERLTTVQAERMLVEQADVSRGKR 118
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138
>gi|51893132|ref|YP_075823.1| hypothetical protein STH1994 [Symbiobacterium thermophilum IAM
14863]
gi|62900963|sp|Q67MW4|RUVX_SYMTH RecName: Full=Putative Holliday junction resolvase
gi|51856821|dbj|BAD40979.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 144
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+A+SD A + R+ + Q L + +++G+P N
Sbjct: 3 IGGLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLDEIARHYGVVRWVVGMPRN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GPR TRAF+ + +P WDERL+T++A+++L++ +VSR +R + +D
Sbjct: 63 MNGTYGPRAELTRAFMERLAGHS-GLPVEAWDERLSTMAAERVLLEADVSRARRRKVIDK 121
Query: 139 IAAALILQEVLD 150
+AAA+ILQ LD
Sbjct: 122 MAAAVILQGYLD 133
>gi|227498473|ref|ZP_03928619.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226903931|gb|EEH89849.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 138
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 74/132 (56%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +DLGT+ IG+A+SD A + R L + E + AF++G P N
Sbjct: 3 IMGLDLGTRTIGVAVSDEMGLIARGIETIRRSGTKNDLARLHELVQKEEVGAFVLGYPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G R ++ AF + WDERL+TV+A+++LID +++RKKR + +D
Sbjct: 63 MNGTIGERGKASEAFSKLLQTEFPDAKITLWDERLSTVAAEKVLIDADLTRKKRKKVIDM 122
Query: 139 IAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 123 MAAVVILQNYLD 134
>gi|16800605|ref|NP_470873.1| Holliday junction resolvase-like protein [Listeria innocua
Clip11262]
gi|32130053|sp|Q92BL1|RUVX_LISIN RecName: Full=Putative Holliday junction resolvase
gi|16414010|emb|CAC96768.1| lin1537 [Listeria innocua Clip11262]
gi|313618843|gb|EFR90723.1| putative Holliday junction resolvase [Listeria innocua FSL S4-378]
gi|313623694|gb|EFR93845.1| putative Holliday junction resolvase [Listeria innocua FSL J1-023]
Length = 138
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP G + + Q + + + E + ++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDESRKQFGYDRVKELVLEYEVEKVVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +
Sbjct: 63 KNMNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKLAAVMILQSYLD 135
>gi|319940102|ref|ZP_08014456.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus
1_2_62CV]
gi|319810816|gb|EFW07143.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus
1_2_62CV]
Length = 139
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 88/136 (64%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+A+SDP A + + ++ + + LS + E + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLSELVKEYKVNKFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ I++ ++P + DERLTTV+A+++LI+ +VSRKKR +
Sbjct: 63 KNMNNTSGPRVEASQAY-GAKIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|296875599|ref|ZP_06899670.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 15912]
gi|296433396|gb|EFH19172.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 15912]
Length = 139
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+G+K +G+A+SDP A + + + + LE L+ + + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ MI K +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAY-GTMIAEKFGLPVDYQDERLTTVAAERMLIEQADISRSKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|16803542|ref|NP_465027.1| Holliday junction resolvase-like protein [Listeria monocytogenes
EGD-e]
gi|224500668|ref|ZP_03669017.1| hypothetical protein LmonF1_13746 [Listeria monocytogenes Finland
1988]
gi|224501558|ref|ZP_03669865.1| hypothetical protein LmonFR_03407 [Listeria monocytogenes FSL
R2-561]
gi|254828264|ref|ZP_05232951.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|254829739|ref|ZP_05234394.1| Holliday junction resolvase-like protein [Listeria monocytogenes
10403S]
gi|254898332|ref|ZP_05258256.1| Holliday junction resolvase-like protein [Listeria monocytogenes
J0161]
gi|254912176|ref|ZP_05262188.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936504|ref|ZP_05268201.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|255018845|ref|ZP_05290971.1| Holliday junction resolvase-like protein [Listeria monocytogenes
FSL F2-515]
gi|290893861|ref|ZP_06556839.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|315282410|ref|ZP_07870829.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120]
gi|32130047|sp|Q8Y723|RUVX_LISMO RecName: Full=Putative Holliday junction resolvase
gi|16410931|emb|CAC99580.1| lmo1502 [Listeria monocytogenes EGD-e]
gi|258600652|gb|EEW13977.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258609098|gb|EEW21706.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|290556578|gb|EFD90114.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|293590149|gb|EFF98483.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|313608700|gb|EFR84531.1| putative Holliday junction resolvase [Listeria monocytogenes FSL
F2-208]
gi|313613944|gb|EFR87669.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120]
Length = 138
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP G + + Q + + + E + ++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +
Sbjct: 63 KNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKLAAVMILQSYLD 135
>gi|326201373|ref|ZP_08191245.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM
2782]
gi|325988941|gb|EGD49765.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM
2782]
Length = 142
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
I ID G RIG+AISDP A + K+ + A+ LS I E + +IG P+
Sbjct: 3 ILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKESLKKAVLRLSEIIKEYGVTDIVIGYPI 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG++GPR T F+ + D + + WDERLTTVSA + + ++ + K+ VD
Sbjct: 63 NMNGTKGPRTERTEEFIKKISDFGEF-NIIKWDERLTTVSAHRTMNELGIKASKKKDIVD 121
Query: 138 SIAAALILQEVLDRIS 153
+++A LILQ LDR++
Sbjct: 122 TMSAVLILQGYLDRMA 137
>gi|239787333|emb|CAX83809.1| Resolvase family protein, holliday junction-type, YqgF-like
[uncultured bacterium]
Length = 161
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
Q + +ID G + +G+A+SD + P F + K L + I ++G
Sbjct: 11 GQRLLAIDYGDRFLGVAVSDIMWHISTPL-FPIDSKSCNAFQALGALIDQHACGGIVVGY 69
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+NMNGSEGP R F + +P +DERL+TV+A++ +++ ++SRKKR QK
Sbjct: 70 PINMNGSEGPACERVREFCQKIKKFFPSIPIGLFDERLSTVAAERNMVEADMSRKKRKQK 129
Query: 136 VDSIAAALILQEVLDRI 152
VDS+AA+ +LQ LD +
Sbjct: 130 VDSLAASYVLQGTLDYL 146
>gi|134298642|ref|YP_001112138.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1]
gi|172044263|sp|A4J2L0|RUVX_DESRM RecName: Full=Putative Holliday junction resolvase
gi|134051342|gb|ABO49313.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1]
Length = 137
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+A+SDP A + R + + L I+ ++ ++G+P N
Sbjct: 3 IMGLDVGDKTIGVALSDPLGWTAQGLEVIRRDTIEKDMNRLAQIISEYSVERILVGMPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G + AF+ + K+ +P WDERL+TV+A+++LI +VSR KR + +D
Sbjct: 63 MNGTVGSQGEKVLAFIEK-VKEKIDLPIKTWDERLSTVAAEKMLIQADVSRGKRKKVIDK 121
Query: 139 IAAALILQEVLD 150
+AAA+ILQ LD
Sbjct: 122 MAAAVILQGYLD 133
>gi|326693839|ref|ZP_08230844.1| putative Holliday junction resolvase [Leuconostoc argentinum KCTC
3773]
Length = 143
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+G++ +G+A+SDP A + + + + LE L I + + ++GLP
Sbjct: 3 ILGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEAEFGLERLGEIIKAKQVKGVVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
NMN SEGPR + R + M++ +P F DERLTTV A+++LI + ++SRKKR Q
Sbjct: 63 KNMNNSEGPRAEAARRYAK-MVEETFGLPTDFQDERLTTVQAERMLIEEADISRKKRKQV 121
Query: 136 VDSIAAALILQEVLD 150
+D IAA ILQ LD
Sbjct: 122 IDKIAAEFILQNYLD 136
>gi|288906372|ref|YP_003431594.1| hypothetical protein GALLO_2188 [Streptococcus gallolyticus UCN34]
gi|306832418|ref|ZP_07465571.1| crossover junction endodeoxyribonuclease [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325979385|ref|YP_004289101.1| putative holliday junction resolvase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|288733098|emb|CBI14679.1| Conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304425458|gb|EFM28577.1| crossover junction endodeoxyribonuclease [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325179313|emb|CBZ49357.1| putative holliday junction resolvase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 139
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 84/137 (61%), Gaps = 4/137 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+G+K +G+AISDP G + ++ + E L + + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLEELVKQYKVDKFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN +EGPRV +++A+ + I+ +P + DERLTTV A+++L++ +VSR KR +
Sbjct: 63 KNMNNTEGPRVEASKAY-GDKINELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKKV 121
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 122 IDKLAAQLILQNYLDRM 138
>gi|332799383|ref|YP_004460882.1| Holliday junction resolvase [Tepidanaerobacter sp. Re1]
gi|332697118|gb|AEE91575.1| Holliday junction resolvase [Tepidanaerobacter sp. Re1]
Length = 143
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
I +D+G KR+G+AISD A + RK + + I+ N+ I+GLP
Sbjct: 3 ILGLDVGEKRVGVAISDELGLTAQGIDVIERKNDGKNKDIDRICRIISDYNVTKVIVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP + + + + + + FWDERLTT +A++ILI+ +VSR+KR +
Sbjct: 63 KNMNGTLGPSSEAVENYTKKL-QKAISIDLEFWDERLTTAAAERILIEADVSRQKRKGVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 122 DKLAAVLILQSYLD 135
>gi|160940886|ref|ZP_02088226.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
BAA-613]
gi|158436130|gb|EDP13897.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
BAA-613]
Length = 171
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFI 72
N I +D G+K +G+A+ DP A + R K+ QT + I I +
Sbjct: 30 NMRIMGLDFGSKTVGVAVCDPLGITAQTVETITRASENKMRQTLARIEQLIGEYEIERIV 89
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P NMN + G R T+ F ++R+ + + WDERLTTV+A+++LI+ V R+ R
Sbjct: 90 LGYPKNMNNTVGERGEKTQEF-KAALERRTGLEVILWDERLTTVAAERVLIESGVRRENR 148
Query: 133 IQKVDSIAAALILQEVLDRISF 154
+ VD IAAA+ILQ LD + +
Sbjct: 149 KKSVDQIAAAMILQGYLDSLQY 170
>gi|222153870|ref|YP_002563047.1| Holliday junction resolvase [Streptococcus uberis 0140J]
gi|254767528|sp|B9DW62|RUVX_STRU0 RecName: Full=Putative Holliday junction resolvase
gi|222114683|emb|CAR43762.1| putative Holliday junction resolvase [Streptococcus uberis 0140J]
Length = 139
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ E LS + + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKNSFGFERLSELVKQYQVDKFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + D ++P V+ DERLTTV A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGKKIEDL-FHIPVVYQDERLTTVQAERMLIEQADISRGKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|315221498|ref|ZP_07863418.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus
F0211]
gi|315189332|gb|EFU23027.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus
F0211]
Length = 139
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 88/136 (64%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+A+SDP A + + ++ + + L+ + E + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLNGLVQEYKVDKFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ I++ ++P + DERLTTV+A+++LI+ +VSRKKR +
Sbjct: 63 KNMNNTSGPRVEASQAY-GTKIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|322390444|ref|ZP_08063964.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 903]
gi|321142843|gb|EFX38301.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 903]
Length = 139
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+G+K +G+A+SDP A + + + + LE L+ + + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ MI K +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAY-GAMIAEKFGMPVDYQDERLTTVAAERMLIEQADISRSKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|269958631|ref|YP_003328418.1| putative Holliday junction resolvase [Anaplasma centrale str.
Israel]
gi|269848460|gb|ACZ49104.1| putative Holliday junction resolvase [Anaplasma centrale str.
Israel]
Length = 157
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
IE + L N+ I +D G +++GLAISD A P +R+ + Q EL + +
Sbjct: 6 IEGFFEKLGANKKILGLDFGERKLGLAISDSTGTIAMPHSVYLRRNIRQDLGELNAILKR 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
E I A ++GLPL ++G EG RAFV +I +K + DER TT A + +
Sbjct: 66 EGIIAAVVGLPLQLDGLEGEMCAVVRAFVRKLI-KKSGIYVYLHDERYTTAMASRATESL 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
+ RK+ + D I+A LILQ+VLD
Sbjct: 125 GLRRKESQKVDDKISAVLILQQVLD 149
>gi|311069221|ref|YP_003974144.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942]
gi|310869738|gb|ADP33213.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942]
Length = 138
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 3/137 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76
I +DLGTK +G+A+SD G + + L LS +T ++ I ++G P
Sbjct: 3 ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLPRLSELTKDHTIDKIVLGFP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR + +
Sbjct: 63 KNMNGTVGPRGEASQTFAK-LLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD ++
Sbjct: 122 DKMAAVMILQGYLDSLN 138
>gi|312866891|ref|ZP_07727104.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0405]
gi|311097674|gb|EFQ55905.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0405]
Length = 139
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+G+K +G+A+SDP A + + + + LE L+ + + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKREFGLERLAELVAQYKVDRFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ MI K +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAY-GTMIAEKFGLPVDYQDERLTTVAAERMLIEQADISRSKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|312862410|ref|ZP_07722653.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis
F0396]
gi|322515847|ref|ZP_08068791.1| crossover junction endodeoxyribonuclease [Streptococcus
vestibularis ATCC 49124]
gi|311102053|gb|EFQ60253.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis
F0396]
gi|322125733|gb|EFX97055.1| crossover junction endodeoxyribonuclease [Streptococcus
vestibularis ATCC 49124]
Length = 139
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 10/140 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
+ +D+G+K +G+AISDP A + K+ + A E L + + F++
Sbjct: 3 VMGLDVGSKTVGVAISDPLGFTAQGVEII---KIDEEAEEFGFDRLGELVKEYKVEKFVV 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN +EGPRV +++A+ + I +P + DERLTTV A+++L++ +VSR KR
Sbjct: 60 GLPKNMNNTEGPRVEASKAY-GDKIKEIFEIPVDYQDERLTTVQAERMLVEQADVSRGKR 118
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138
>gi|206975936|ref|ZP_03236846.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97]
gi|217961876|ref|YP_002340446.1| Holliday junction resolvase-like protein [Bacillus cereus AH187]
gi|222097829|ref|YP_002531886.1| holliday junction resolvase-like protein [Bacillus cereus Q1]
gi|229141123|ref|ZP_04269665.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26]
gi|226725487|sp|B7HQE4|RUVX_BACC7 RecName: Full=Putative Holliday junction resolvase
gi|254767497|sp|B9IYF1|RUVX_BACCQ RecName: Full=Putative Holliday junction resolvase
gi|206745688|gb|EDZ57085.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97]
gi|217063507|gb|ACJ77757.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH187]
gi|221241887|gb|ACM14597.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|228642401|gb|EEK98690.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26]
Length = 137
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+GTK +G+AISD G + ++ Q + +S + ++ ++GLP
Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q +
Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLDR 151
D +AA +ILQ LDR
Sbjct: 122 DKMAAVVILQGFLDR 136
>gi|313890363|ref|ZP_07823994.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
SPIN 20026]
gi|313121206|gb|EFR44314.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
SPIN 20026]
Length = 139
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLS-FITTENIAAFIIGLP 76
I +D+G+K +G+AISDP A + + Q + LS + ++ F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEANQAFGFDRLSELVAQYKVSQFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ I +P V+ DERLTTV A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGQK-IQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|328474865|gb|EGF45665.1| Holliday junction resolvase-like protein [Listeria monocytogenes
220]
gi|332311944|gb|EGJ25039.1| Putative Holliday junction resolvase [Listeria monocytogenes str.
Scott A]
Length = 135
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+AISDP G + + Q + + + E + ++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 62 MNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDK 120
Query: 139 IAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 121 LAAVMILQSYLD 132
>gi|306834532|ref|ZP_07467645.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC
700338]
gi|304423334|gb|EFM26487.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC
700338]
Length = 136
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 6/136 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLS-FITTENIAAFIIGLPL 77
+D+G+K +G+AISDP F +VR ++ + E L + + F++GLP
Sbjct: 2 GLDVGSKTVGVAISDP-LGFTAQGVEIVRIDEEAGEFGFERLEELVKQYKVDKFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136
NMN +EGPRV +++A+ + I+ +P + DERLTTV A+++L++ +VSR KR + +
Sbjct: 61 NMNNTEGPRVEASKAY-GDKINELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKKVI 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA LILQ LDR+
Sbjct: 120 DKLAAQLILQNYLDRM 135
>gi|293374256|ref|ZP_06620584.1| RNAse YqgF [Turicibacter sanguinis PC909]
gi|325844837|ref|ZP_08168289.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
gi|292647089|gb|EFF65071.1| RNAse YqgF [Turicibacter sanguinis PC909]
gi|325489024|gb|EGC91412.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
Length = 143
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALE-LLSFITTENIAAFIIGL 75
I +DLGT+ G+AISD AH F + + A++ + + T I+ ++GL
Sbjct: 2 KILGLDLGTRTCGIAISDALGMMAHGVETFRFEENHYKKAIQHVQELVKTHKISKIVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNGS G R T+ F + + V + WDERLTT+ +++LI +VSR KR +
Sbjct: 62 PKNMNGSIGERGQVTQEFAKKL-EEATNVTVILWDERLTTMQVERVLIQADVSRNKRKKV 120
Query: 136 VDSIAAALILQEVLD 150
VD +AA +ILQ LD
Sbjct: 121 VDKMAATIILQSYLD 135
>gi|226324641|ref|ZP_03800159.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758]
gi|225207089|gb|EEG89443.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758]
Length = 143
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D GTK +G+A+SDP A + RK K+ +T + S T + F+IG
Sbjct: 4 IMGLDYGTKTVGVAVSDPLGITAQAVETVTRKDENKLRKTLARIESLATEYGVEKFVIGF 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MN G R F M+ R+ + V WDERLTTV A++ L++ V R+ R Q
Sbjct: 64 PKHMNNDIGERAEKALEF-GEMLKRRTGIEIVMWDERLTTVEAERTLMESGVRRENRKQY 122
Query: 136 VDSIAAALILQEVLDRISF 154
VD IAA ILQ LD +
Sbjct: 123 VDQIAAVFILQGYLDSLGM 141
>gi|315652510|ref|ZP_07905494.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Eubacterium saburreum DSM 3986]
gi|315485226|gb|EFU75624.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Eubacterium saburreum DSM 3986]
Length = 145
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFII 73
+ I +D G+K IG+AISD A P + R K+ ++ ++ + +NI ++
Sbjct: 5 ERIMGLDYGSKTIGVAISDSLGLTAQPFETIERSKENKLRRSLAKIAKIVEEKNIKKIVV 64
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+NMNG G RV T FV + R V VP + DERLTTV A +IL + V ++ R
Sbjct: 65 GLPVNMNGRRGKRVSLTLEFVEKLKQR-VDVPIIMQDERLTTVEADEILDESGVKKENRK 123
Query: 134 QKVDSIAAALILQEVLDR 151
Q +D +AA +IL+E +++
Sbjct: 124 QFIDMVAAGIILREYMEK 141
>gi|239827825|ref|YP_002950449.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
gi|259495706|sp|C5D4Z1|RUVX_GEOSW RecName: Full=Putative Holliday junction resolvase
gi|239808118|gb|ACS25183.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
Length = 138
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 82/134 (61%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
+ +DLGTK +G+A+SD G + ++ + L+ L I E + ++G P
Sbjct: 3 VLGLDLGTKTLGVAVSDELGWTAQGIETISIDEERGEYGLKRLREIIDEYEVDTIVVGFP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR +++ F +++ + +P + WDERL+T++A+++LI +VSRKKR Q +
Sbjct: 63 KNMNGTVGPRAEASQRFAK-LLESEFSLPVILWDERLSTMAAERMLITADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVVILQSYLD 135
>gi|217964351|ref|YP_002350029.1| hypothetical protein LMHCC_1067 [Listeria monocytogenes HCC23]
gi|284801892|ref|YP_003413757.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578]
gi|284995034|ref|YP_003416802.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923]
gi|217333621|gb|ACK39415.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
gi|284057454|gb|ADB68395.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578]
gi|284060501|gb|ADB71440.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923]
gi|307571083|emb|CAR84262.1| holliday junction resolvase, putative [Listeria monocytogenes L99]
Length = 135
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+AISDP G + + Q + + + E + ++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 62 MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDK 120
Query: 139 IAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 121 LAAVMILQSYLD 132
>gi|182418929|ref|ZP_02950186.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237669098|ref|ZP_04529082.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377212|gb|EDT74780.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237657446|gb|EEP55002.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 140
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
I +DLG K IG+AISDP F +R+ + +E L I E + +IGLP
Sbjct: 4 ILGLDLGQKTIGVAISDP-LGFTAQGLTTIRRGSKEKDIEDLKKICDEYKVETIVIGLPK 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP AF +++ + + FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 63 NMNGTIGPSGEIAMAF-GKLLEEEFQIEIKFWDERLTTVAAHKAMLEADLSRNKRKKIVD 121
Query: 138 SIAAALILQEVLDRIS 153
+A+ ILQ LD IS
Sbjct: 122 KVASTYILQGYLDMIS 137
>gi|30022462|ref|NP_834093.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC
14579]
gi|218232910|ref|YP_002369196.1| Holliday junction resolvase-like protein [Bacillus cereus B4264]
gi|228923138|ref|ZP_04086429.1| Holliday junction resolvase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|229071895|ref|ZP_04205106.1| Holliday junction resolvase [Bacillus cereus F65185]
gi|229111859|ref|ZP_04241405.1| Holliday junction resolvase [Bacillus cereus Rock1-15]
gi|229129667|ref|ZP_04258635.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4]
gi|229146957|ref|ZP_04275321.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24]
gi|229152590|ref|ZP_04280779.1| Holliday junction resolvase [Bacillus cereus m1550]
gi|33301594|sp|Q812R9|RUVX_BACCR RecName: Full=Putative Holliday junction resolvase
gi|226725486|sp|B7HE21|RUVX_BACC4 RecName: Full=Putative Holliday junction resolvase
gi|29898020|gb|AAP11294.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
gi|218160867|gb|ACK60859.1| conserved hypothetical protein TIGR00250 [Bacillus cereus B4264]
gi|228630851|gb|EEK87491.1| Holliday junction resolvase [Bacillus cereus m1550]
gi|228636556|gb|EEK93022.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24]
gi|228653784|gb|EEL09654.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4]
gi|228671615|gb|EEL26913.1| Holliday junction resolvase [Bacillus cereus Rock1-15]
gi|228711191|gb|EEL63155.1| Holliday junction resolvase [Bacillus cereus F65185]
gi|228836517|gb|EEM81867.1| Holliday junction resolvase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 137
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+GTK +G+AISD G + ++ + +S + N+ ++GLP
Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q +
Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLDR 151
D +AA +ILQ LDR
Sbjct: 122 DKMAAVVILQGFLDR 136
>gi|325290060|ref|YP_004266241.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271]
gi|324965461|gb|ADY56240.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271]
Length = 134
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +DLG K IG+A+SD +P LV K+ + EL I + ++G P N
Sbjct: 3 VMGLDLGEKTIGVAVSDL--LMLTAQPLLVIKRSEKEQEELAGIIKEYEVDTIVVGYPKN 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G R +T AF + +P WDERL+TV+AQ+ LI +VSR KR + +D
Sbjct: 61 MNGTIGERALATEAFAQEL-QAAFRLPIKLWDERLSTVAAQKSLIQADVSRAKRKKVIDK 119
Query: 139 IAAALILQEVLD 150
+AA ILQ LD
Sbjct: 120 MAAVFILQGFLD 131
>gi|255527853|ref|ZP_05394701.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7]
gi|296185454|ref|ZP_06853864.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7]
gi|255508464|gb|EET84856.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7]
gi|296050288|gb|EFG89712.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7]
Length = 138
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G + IG+A+SDP A + RK EL + N+ + GLP N
Sbjct: 3 ILGLDVGDRTIGVAVSDPLGFTAQGITTIRRKSQDADIKELKNICDEYNVETIVSGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP+ F +I K+ +P WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 63 MNGTLGPQSEKVLKFCE-VIKEKIGLPIKMWDERLTTVAAHRAMLEADLSRNKRKKIVDK 121
Query: 139 IAAALILQEVLDRIS 153
+AA ILQ LD IS
Sbjct: 122 MAAIYILQGYLDSIS 136
>gi|291539698|emb|CBL12809.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis
XB6B4]
Length = 144
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +GLA+SD A + R+ K+ QT + + I + ++G
Sbjct: 3 ILGLDFGSKTVGLAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN +EG R T+ F M++R+ + + WDERLTTVSA + +++ + R+ R +
Sbjct: 63 PKNMNNTEGERCEKTKEF-KEMLERRTGLEVILWDERLTTVSADKHMMESGIRREDRKKY 121
Query: 136 VDSIAAALILQEVLD 150
VD IAA ILQ LD
Sbjct: 122 VDEIAAVFILQGYLD 136
>gi|313891828|ref|ZP_07825433.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII
345-E]
gi|329121066|ref|ZP_08249697.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Dialister micraerophilus DSM 19965]
gi|313119822|gb|EFR43009.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII
345-E]
gi|327471228|gb|EGF16682.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Dialister micraerophilus DSM 19965]
Length = 145
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
I ++D+G+ IG+AISD A +R + E L + I + ++ ++G+PL
Sbjct: 3 IMALDVGSHTIGVAISDLMGWTAQGLE-TIRHSTREKDFERLKTIIDSYDVKEIVVGMPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG++G R T FV ++ +P FWDERLTTV AQ+ LI ++SRKKR + +D
Sbjct: 62 NMNGTKGIRAELTEDFVKDLKSAFPNIPCAFWDERLTTVMAQKTLISADMSRKKRKKVID 121
Query: 138 SIAAALILQEVLDRISF 154
+AA +IL+ L + F
Sbjct: 122 KLAATVILEGYLRHLEF 138
>gi|146317727|ref|YP_001197439.1| Holliday junction resolvase-like protein [Streptococcus suis
05ZYH33]
gi|146319916|ref|YP_001199627.1| Holliday junction resolvase-like protein [Streptococcus suis
98HAH33]
gi|223934259|ref|ZP_03626188.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
gi|253750983|ref|YP_003024124.1| Holliday junction resolvase [Streptococcus suis SC84]
gi|253752883|ref|YP_003026023.1| Holliday junction resolvase [Streptococcus suis P1/7]
gi|253754708|ref|YP_003027848.1| Holliday junction resolvase [Streptococcus suis BM407]
gi|167016513|sp|A4VYN8|RUVX_STRS2 RecName: Full=Putative Holliday junction resolvase
gi|167016515|sp|A4VSF0|RUVX_STRSY RecName: Full=Putative Holliday junction resolvase
gi|145688533|gb|ABP89039.1| Unknown protein [Streptococcus suis 05ZYH33]
gi|145690722|gb|ABP91227.1| unknown protein [Streptococcus suis 98HAH33]
gi|223897073|gb|EEF63505.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
gi|251815272|emb|CAZ50837.1| putative Holliday junction resolvase [Streptococcus suis SC84]
gi|251817172|emb|CAZ54893.1| putative Holliday junction resolvase [Streptococcus suis BM407]
gi|251819128|emb|CAR44214.1| putative Holliday junction resolvase [Streptococcus suis P1/7]
gi|292557526|gb|ADE30527.1| Resolvase, holliday junction-type, YqgF-like protein [Streptococcus
suis GZ1]
Length = 139
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 87/136 (63%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ + LE L+ + + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ +++ + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAY-GDLLTERYKLPVDYQDERLTTVAAERMLIEQADISRGKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|116628625|ref|YP_821244.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus LMD-9]
gi|122266781|sp|Q03IC4|RUVX_STRTD RecName: Full=Putative Holliday junction resolvase
gi|116101902|gb|ABJ67048.1| RNase H-like ribonuclease [Streptococcus thermophilus LMD-9]
gi|312279278|gb|ADQ63935.1| Holliday junction resolvase YqgF [Streptococcus thermophilus ND03]
Length = 139
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 10/140 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
+ +D+G+K +G+AISDP A + K+ + A E L + + F++
Sbjct: 3 VMGLDVGSKTVGVAISDPLGFTAQGVEII---KINEEAKEFGFDRLGELVKEYQVDKFVV 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN +EGPRV +++A+ + I +P + DERLTTV A+++L++ +VSR KR
Sbjct: 60 GLPKNMNNTEGPRVEASKAY-GDKIKEIFNLPVDYQDERLTTVQAERMLVEQADVSRDKR 118
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138
>gi|308070325|ref|YP_003871930.1| Holliday junction resolvase [Paenibacillus polymyxa E681]
gi|305859604|gb|ADM71392.1| Putative Holliday junction resolvase [Paenibacillus polymyxa E681]
Length = 138
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D G +RIG+A+SD A + R+ ++ + + + ++GLP N
Sbjct: 3 VMGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGDDSEFGKIANLVRDNEVGEIVVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GPR F N + + +P WDERLTT SA++ L++ +VSRKKR Q VD
Sbjct: 63 MNGTVGPRGEICIEFA-NRLKELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVDK 121
Query: 139 IAAALILQEVLD 150
+AA+LILQ LD
Sbjct: 122 LAASLILQNYLD 133
>gi|258515480|ref|YP_003191702.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM
771]
gi|257779185|gb|ACV63079.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM
771]
Length = 139
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
I +DLG K IG+A+SDP A + RK + L L I + ++GLP
Sbjct: 3 IMCLDLGEKTIGIALSDPFGWTAQGLEIINRKGQPKQELNRLREIIKQYEVEKVVVGLPK 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ F+ + RK+ + WDERL+TV+A++IL+ ++SR KR + +D
Sbjct: 63 NMNGTTGPQAEKALDFIE-YLKRKLGLVVEAWDERLSTVAAERILLSADISRGKRKKVID 121
Query: 138 SIAAALILQEVLDRISFL 155
+AAA+ILQ LD S +
Sbjct: 122 KMAAAVILQGYLDAHSCI 139
>gi|257066431|ref|YP_003152687.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548]
gi|256798311|gb|ACV28966.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548]
Length = 139
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 79/133 (59%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+A+SDP ++ + RKK + + + ++ ++GLP N
Sbjct: 4 IMGLDVGNKTIGVALSDPMFLLSNALETIKRKKASVDIERIKQLVEENDVNLIVVGLPKN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GP+ +FV +++ ++V V V+ DER+TT+ ++ +L+DM V R+ R + +D
Sbjct: 64 MNNTIGPQAMRVISFV-DLLKKQVDVEVVYEDERMTTIQSEAVLMDMEVRRENRKKYIDK 122
Query: 139 IAAALILQEVLDR 151
IAA ILQ LDR
Sbjct: 123 IAATFILQTYLDR 135
>gi|218132863|ref|ZP_03461667.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC
43243]
gi|217991736|gb|EEC57740.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC
43243]
Length = 139
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 4/132 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFIIGL 75
I +D GTK +G+A++DP P + R K+ T + I ++ ++GL
Sbjct: 3 ILGLDYGTKTVGVAVTDPLGMTVQPLETITRDSDSKIRPTLRRIEEIIKELDVEQIVLGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+EG R +R F +M++R+ + V DERLTTV A++IL V+RK +
Sbjct: 63 PLNMDGTEGERAACSREF-GDMLERRTGLQVVMTDERLTTVEAEEILETCKVARKDYKKY 121
Query: 136 VDSIAAALILQE 147
VDS+AA LIL++
Sbjct: 122 VDSVAAVLILED 133
>gi|332523405|ref|ZP_08399657.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str.
Jelinkova 176]
gi|332314669|gb|EGJ27654.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str.
Jelinkova 176]
Length = 139
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLS-FITTENIAAFIIGLP 76
I +D+G+K +G+AISDP A + + Q + LS + +++ F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDNQAFGFDRLSELVAQYDVSQFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ I +P V+ DERLTTV A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGQK-IQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|15613832|ref|NP_242135.1| hypothetical protein BH1269 [Bacillus halodurans C-125]
gi|32130069|sp|Q9KDE4|RUVX_BACHD RecName: Full=Putative Holliday junction resolvase
gi|10173885|dbj|BAB04988.1| BH1269 [Bacillus halodurans C-125]
Length = 140
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 7/135 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPLN 78
+D+GTK IG+A+SD A R + A + S + + +IGLP N
Sbjct: 5 GLDVGTKTIGIAVSDALGWTAQGLETWRRSDANEQADFEHIASLVKEHEVTTIVIGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVP--FVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
M+GS GP + F + + YVP V WDERLTT +A+++LI +VSRKKR +
Sbjct: 65 MDGSIGPSGERSETFAAEL---RRYVPCEIVMWDERLTTTAAERMLISADVSRKKRKSVI 121
Query: 137 DSIAAALILQEVLDR 151
D +AA +ILQ LDR
Sbjct: 122 DKMAAVMILQGYLDR 136
>gi|227484975|ref|ZP_03915291.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
ATCC 51172]
gi|227237130|gb|EEI87145.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
ATCC 51172]
Length = 139
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+A+SDP A P + R K + +I+ ++GLP N
Sbjct: 4 IMGLDVGDKTIGVALSDPLFITAQPYETIKRTKAKFDIDRIEKIFVENDISLIVVGLPKN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GP+ +FV ++I +++ V+ DERLTT+ ++ +LIDM+V R+ R +D
Sbjct: 64 MNNTMGPQSMRIISFV-DLIKKRIDTEIVYQDERLTTIQSESVLIDMSVRRENRKAHIDK 122
Query: 139 IAAALILQEVLDR 151
IAA+ ILQ LDR
Sbjct: 123 IAASFILQTYLDR 135
>gi|288555385|ref|YP_003427320.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4]
gi|288546545|gb|ADC50428.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4]
Length = 139
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 77/133 (57%), Gaps = 3/133 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPLN 78
+D+GTK +G+A+SD A L R + + L++ ++ +IGLP N
Sbjct: 5 GLDVGTKTVGIALSDELGWTAQGIETLRRNEEDPESDFLKIAELAKQNDVETIVIGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP F ++ + V FV WDERLTTV+A+++L+ +VSRKKR + +D
Sbjct: 65 MNGTIGPSGERCMEFADSLKEH-VDCEFVMWDERLTTVAAERMLVSADVSRKKRKKVIDK 123
Query: 139 IAAALILQEVLDR 151
+AA +ILQ LDR
Sbjct: 124 MAAVMILQGYLDR 136
>gi|310643513|ref|YP_003948271.1| holliday junction resolvase-like protein [Paenibacillus polymyxa
SC2]
gi|309248463|gb|ADO58030.1| Holliday junction resolvase-like protein [Paenibacillus polymyxa
SC2]
Length = 138
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D G +RIG+A+SD A + R+ ++ + + I ++GLP N
Sbjct: 3 VMGLDYGDRRIGVAVSDAFGWTAQGLVVIERRGDDSEFGKIANLVREHEIGEVVVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GPR F N + + +P WDERLTT SA++ L++ +VSRKKR Q VD
Sbjct: 63 MNGTVGPRGEICIEFA-NRLKELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVDK 121
Query: 139 IAAALILQEVLD 150
+AA+LILQ LD
Sbjct: 122 LAASLILQNYLD 133
>gi|170016827|ref|YP_001727746.1| endonuclease [Leuconostoc citreum KM20]
gi|226731627|sp|B1MXQ0|RUVX_LEUCK RecName: Full=Putative Holliday junction resolvase
gi|169803684|gb|ACA82302.1| Predicted endonuclease [Leuconostoc citreum KM20]
Length = 143
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 79/133 (59%), Gaps = 4/133 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIA-AFIIGLPLN 78
+D+G++ +G+A+SDP A + + + + L L I E A ++GLP N
Sbjct: 5 GLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKEFGLARLGEIIKEKQAKGVVVGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
MN SEGPR + R + M++ + +P F DERLTTV A+++L+ + +VSRKKR Q +D
Sbjct: 65 MNNSEGPRAEAARQYAQ-MVEDQFNLPTDFQDERLTTVQAERMLVEEADVSRKKRKQVID 123
Query: 138 SIAAALILQEVLD 150
IAA ILQ LD
Sbjct: 124 KIAAEFILQNYLD 136
>gi|323490024|ref|ZP_08095245.1| Holliday junction resolvase-like protein [Planococcus donghaensis
MPA1U2]
gi|323396320|gb|EGA89145.1| Holliday junction resolvase-like protein [Planococcus donghaensis
MPA1U2]
Length = 138
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+G+K IG+AISDP G + + + + +E L I + ++G P
Sbjct: 3 IIGLDVGSKTIGVAISDPMGWTAQGIETIKINEAIEEFGMERLGELIKQYEVTEAVVGYP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN S GPR ++ F ++ +P V WDERLTT +A+++LI +VSRK R + +
Sbjct: 63 KNMNNSIGPRAEASEKFAA-LLKEAYSIPVVLWDERLTTSAAEKMLISADVSRKNRKKVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVMILQGYLD 135
>gi|116617674|ref|YP_818045.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|122272125|sp|Q03YQ0|RUVX_LEUMM RecName: Full=Putative Holliday junction resolvase
gi|116096521|gb|ABJ61672.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 143
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G++ +G+++SDP A + + + + ++ L I E N ++GLP
Sbjct: 3 ILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDEKEFGIDRLGEIIKEKNATGVVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
NMN SEGPR ++R + +I++ +P F DERLTTV A+++LI + N+SRKKR +
Sbjct: 63 KNMNNSEGPRAEASRNYAK-LIEKTFGLPTDFQDERLTTVEAERMLIEEANISRKKRKKV 121
Query: 136 VDSIAAALILQEVLD 150
+D IAA ILQ LD
Sbjct: 122 IDKIAAEFILQNYLD 136
>gi|323702199|ref|ZP_08113866.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
574]
gi|323532886|gb|EGB22758.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
574]
Length = 140
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
+ +D+G K IG+A+SDP A + R L L+ I E + ++GLP
Sbjct: 3 VMGLDVGDKTIGVALSDPLGWTAQALEVIRRGDNLDKDLNRLAEIVQEYQVEQILVGLPK 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ AF+ + +R + +P WDERL+TV+A++ L++ +VSR KR + +D
Sbjct: 63 NMNGTLGPQGEKVLAFIERLKER-INLPVKTWDERLSTVAAERALLEADVSRSKRKKVID 121
Query: 138 SIAAALILQEVLD 150
+AAA+ILQ LD
Sbjct: 122 KMAAAVILQGYLD 134
>gi|55821927|ref|YP_140369.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus LMG 18311]
gi|55823846|ref|YP_142287.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus CNRZ1066]
gi|62900908|sp|Q5LXP0|RUVX_STRT1 RecName: Full=Putative Holliday junction resolvase
gi|62900909|sp|Q5M292|RUVX_STRT2 RecName: Full=Putative Holliday junction resolvase
gi|55737912|gb|AAV61554.1| DNA recombination protein, putative [Streptococcus thermophilus LMG
18311]
gi|55739831|gb|AAV63472.1| DNA recombination protein, putative [Streptococcus thermophilus
CNRZ1066]
Length = 139
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 10/140 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
+ +D+G+K +G+AISDP A + K+ + A E L + + F++
Sbjct: 3 VMGLDVGSKTVGVAISDPLGFTAQGVEII---KINEEAKEFGFDRLGELVKEYQVDKFVV 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN +EGPRV +++A+ + I +P + DERLTTV A+++L++ +VSR KR
Sbjct: 60 GLPKNMNNTEGPRVEASKAY-GDKIKEIFNLPVDYQDERLTTVQAERMLVEQADVSRGKR 118
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138
>gi|296333169|ref|ZP_06875622.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675325|ref|YP_003866997.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296149367|gb|EFG90263.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413569|gb|ADM38688.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 138
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 3/137 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +DLGTK +G+A+SD G + + L LS + E I ++G P
Sbjct: 3 ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKEYTIDKIVLGFP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR + +
Sbjct: 63 KNMNGTVGPRGEASQTFAK-VLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD ++
Sbjct: 122 DKMAAVMILQGYLDSLN 138
>gi|295396921|ref|ZP_06807045.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC
11563]
gi|294974855|gb|EFG50558.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC
11563]
Length = 139
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 83/132 (62%), Gaps = 3/132 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+A+SDP A + + +++ + L+ L + E + A ++GLP N
Sbjct: 5 GLDVGSKTVGVAVSDPFGWTAQGVEIIPIDEELEEFGLDRLGELIAEYKVEALVLGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN S GPR +++ + +IDR +P + DERLTTV A+++LI +VSRKKR + +D
Sbjct: 65 MNNSIGPRAEASQKYGQLVIDR-FDLPVFYQDERLTTVQAERMLIANDVSRKKRKKVIDK 123
Query: 139 IAAALILQEVLD 150
+AA LILQ LD
Sbjct: 124 LAAVLILQNYLD 135
>gi|317128239|ref|YP_004094521.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
2522]
gi|315473187|gb|ADU29790.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
2522]
Length = 142
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGLP 76
+ +D+GT IG+AISD A + R K Q L I ++++ ++GLP
Sbjct: 3 VLGLDVGTHTIGVAISDAFGWTAQGLETIKRAKEDEEQDFSRLDEIIRNKDVSTIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP +AF + +R + WDERLTTV+A+++L+ +VSRKKR + +
Sbjct: 63 KNMNGTIGPSGELCQAFAEKLKER-TNLKVELWDERLTTVAAEKMLVSADVSRKKRKKVI 121
Query: 137 DSIAAALILQEVLDR 151
D +AA +ILQ LDR
Sbjct: 122 DKMAAVMILQGYLDR 136
>gi|296133403|ref|YP_003640650.1| Holliday junction resolvase YqgF [Thermincola sp. JR]
gi|296031981|gb|ADG82749.1| Holliday junction resolvase YqgF [Thermincola potens JR]
Length = 133
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 4/132 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D+GTKRIG+A+SDP R A + K + EL I ++ ++GLP N
Sbjct: 3 VLGLDVGTKRIGVAVSDPLRLTAQGLTVI---KKGEELTELPRIIEQMEVSEIVVGLPKN 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS GP+ + + + +P +DERLTTV+A++IL++ ++SR KR Q VD
Sbjct: 60 MDGSLGPKAQEILELTEKLRE-TLQLPVHTYDERLTTVAAERILLEADLSRAKRRQVVDK 118
Query: 139 IAAALILQEVLD 150
AA LILQ LD
Sbjct: 119 TAAVLILQGYLD 130
>gi|322386556|ref|ZP_08060183.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
ATCC 51100]
gi|321269475|gb|EFX52408.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
ATCC 51100]
Length = 139
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ Q E L+ + + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKEQFGFERLTELVEQYKVDKFVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ I + +P + DERLTTV+A+++LI+ +VSR KR +
Sbjct: 63 KNMNNTSGPRVEASKAYGEK-IAQLFQIPVEYQDERLTTVAAERMLIEQADVSRSKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|228478096|ref|ZP_04062707.1| conserved hypothetical protein [Streptococcus salivarius SK126]
gi|228250276|gb|EEK09529.1| conserved hypothetical protein [Streptococcus salivarius SK126]
Length = 139
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 10/140 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
+ +D+G+K +G+AISDP A + K+ + A E L + + F++
Sbjct: 3 VMGLDVGSKTVGVAISDPLGFTAQGVEII---KIDEEAEEFGFDRLGELVKEYKVEKFVV 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN +EGPRV +++A+ + I +P + DERLTTV A+++L++ ++SR KR
Sbjct: 60 GLPKNMNNTEGPRVEASKAY-GDKIKEIFGIPVDYQDERLTTVQAERMLVEQADISRGKR 118
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138
>gi|114327615|ref|YP_744771.1| endonuclease involved in recombination [Granulibacter bethesdensis
CGDNIH1]
gi|114315789|gb|ABI61849.1| endonuclease involved in recombination [Granulibacter bethesdensis
CGDNIH1]
Length = 168
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 2/151 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MS+ + DL L NQ + ID G++ IG+A+SD A P + R K+ A E+
Sbjct: 3 MSLFNVPDLQSRLSRNQRLLGIDPGSRIIGIALSDVLLGIASPYGSIRRGKLRVNAEEIA 62
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ E IIGLPL+M+GS GP + R + + D +P WDER T+ Q
Sbjct: 63 AIARKEEAGGMIIGLPLSMDGSFGPAAQAARDWAIALSD-ATGLPAALWDERETSSRVHQ 121
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
+LI ++ RK+R VD +AAA++LQ LD
Sbjct: 122 LLISSADLGRKRRAAVVDKMAAAVMLQSALD 152
>gi|169343788|ref|ZP_02864787.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C
str. JGS1495]
gi|169298348|gb|EDS80438.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C
str. JGS1495]
Length = 137
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G+K IG+A+SDP A + R T+ ++ + ++G+P N
Sbjct: 3 ILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVVGMPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP + I++ FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 63 MNGTIGPSGEMVKNLCEQ-IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVDK 121
Query: 139 IAAALILQEVLDRIS 153
IAA ILQ LDRIS
Sbjct: 122 IAATYILQGYLDRIS 136
>gi|299822852|ref|ZP_07054738.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601]
gi|299816381|gb|EFI83619.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601]
Length = 138
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 81/134 (60%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
+ +D+G+K +G+AISD G + + Q + + + E ++ ++GLP
Sbjct: 3 VMGLDVGSKTVGVAISDALGWTAQGIETIAINEAAKQFGYDRVKELAQEYEVSKIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GPR S++ + +++++V +P V WDER+TT +A++ L++ +VSR KR + +
Sbjct: 63 KNMNNTLGPRAESSKKYAE-VLEKRVQLPVVLWDERMTTQAAERTLLEADVSRGKRKKVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKLAAVMILQSYLD 135
>gi|325509094|gb|ADZ20730.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum EA 2018]
Length = 135
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID+G K IG+A+SDP A + RK + EL + + GLP N
Sbjct: 3 ILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G + F +I + + VP WDERLTTV+A + +++ ++SRKKR + VD
Sbjct: 63 MNGTIGFQSEKVLGFCE-VIKQNIDVPIKMWDERLTTVAANRAMLEADLSRKKRKKLVDK 121
Query: 139 IAAALILQEVLDRI 152
+AA ILQ LD I
Sbjct: 122 VAATYILQGYLDSI 135
>gi|240145916|ref|ZP_04744517.1| putative holliday junction resolvase [Roseburia intestinalis L1-82]
gi|257201981|gb|EEV00266.1| putative holliday junction resolvase [Roseburia intestinalis L1-82]
gi|291535170|emb|CBL08282.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis
M50/1]
Length = 144
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+A+SD A + R+ K+ QT + + I + ++G
Sbjct: 3 ILGLDFGSKTVGVAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN +EG R T+ F M++R+ + + WDERLTTVSA + +++ + R+ R +
Sbjct: 63 PKNMNNTEGERCEKTKEF-QEMLERRTGLEVILWDERLTTVSADKHMMESGIRREDRKKY 121
Query: 136 VDSIAAALILQEVLD 150
VD IAA ILQ LD
Sbjct: 122 VDEIAAVFILQGYLD 136
>gi|171778528|ref|ZP_02919655.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282751|gb|EDT48175.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 139
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 85/137 (62%), Gaps = 4/137 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ + E L + + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLGELVKQYKVDKFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN +EGPRV +++ + + I++ +P + DERLTTV A+++L++ ++SR KR +
Sbjct: 63 KNMNNTEGPRVEASKVY-GDKINKLFNIPVDYQDERLTTVQAERMLVEQADISRGKRKKV 121
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 122 IDKLAAQLILQNYLDRM 138
>gi|16079793|ref|NP_390617.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. 168]
gi|221310675|ref|ZP_03592522.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314998|ref|ZP_03596803.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319919|ref|ZP_03601213.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324200|ref|ZP_03605494.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321312264|ref|YP_004204551.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5]
gi|6226496|sp|O34634|RUVX_BACSU RecName: Full=Putative Holliday junction resolvase
gi|2635185|emb|CAB14681.1| putative Holliday junction resolvase [Bacillus subtilis subsp.
subtilis str. 168]
gi|291485144|dbj|BAI86219.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
natto BEST195]
gi|320018538|gb|ADV93524.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5]
Length = 138
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +DLGTK +G+A+SD G + + L LS I I ++G P
Sbjct: 3 ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR + +
Sbjct: 63 KNMNGTVGPRGEASQTFAK-VLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 121
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD ++
Sbjct: 122 DKMAAVMILQGYLDSLN 138
>gi|289423537|ref|ZP_06425338.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
gi|289156039|gb|EFD04703.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
Length = 140
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G IG+A+SD A + R+ + + I +N+ + GLP N
Sbjct: 6 IMGLDIGNNTIGVAVSDLMGMTAQGITTIKRESKKKDIEAIKDIIKEQNVNLIVSGLPKN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP+ F +I + + FWDERLTTVSA+++LI +VSRK R + +D
Sbjct: 66 MNGTVGPQAEKVMKFCE-LIKEETKLEVEFWDERLTTVSAEKMLISGDVSRKNRKKVIDK 124
Query: 139 IAAALILQEVLDRISF 154
+AA LILQ LD F
Sbjct: 125 LAAVLILQNYLDFKKF 140
>gi|302874707|ref|YP_003843340.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
gi|307690680|ref|ZP_07633126.1| Holliday junction resolvase-like protein [Clostridium cellulovorans
743B]
gi|302577564|gb|ADL51576.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
Length = 135
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D+G K IG+A+SDP A + RK + ++++ + ++GLP N
Sbjct: 3 VLGLDVGNKTIGVAVSDPLGFTAQGITTINRKNIKTDIETVVNYCNEYTVDTIVVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP+ AFV + + + WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 63 MNGTLGPQSEKVMAFVEKL-KKNTDINIKMWDERLTTVAAHKAMLEADLSRAKRNKIVDK 121
Query: 139 IAAALILQEVLDRI 152
+AA ILQ LD I
Sbjct: 122 VAATYILQGYLDSI 135
>gi|332360144|gb|EGJ37958.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1056]
Length = 139
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 85/136 (62%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ + LE LS + E + F+IGLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLSELVKEYKVDKFVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|88607507|ref|YP_504940.1| hypothetical protein APH_0332 [Anaplasma phagocytophilum HZ]
gi|146325550|sp|Q2GL11|RUVX_ANAPZ RecName: Full=Putative Holliday junction resolvase
gi|88598570|gb|ABD44040.1| conserved hypothetical protein TIGR00250 [Anaplasma phagocytophilum
HZ]
Length = 166
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 1/145 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I +L +L+P + I ID G ++IGLA+SDP A P R+ + Q EL + + +
Sbjct: 6 IRELFSALEPGRRILGIDFGERKIGLALSDPTYLIAIPHSVYHRRNMRQDLGELSAVLRS 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
E+ A ++G PL +G EG RAF +I +K V DER TT A + +
Sbjct: 66 EDAAVVVMGNPLQSDGLEGEMCQIVRAFAQKLI-KKSGVSIYLHDERYTTAMASRATREA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
+ RK+ + D I+AAL+LQ+VLD
Sbjct: 125 GLRRKESQKIDDKISAALVLQQVLD 149
>gi|227432459|ref|ZP_03914446.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227351780|gb|EEJ42019.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 143
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G++ +G++ISDP A + + + + ++ L I E N ++GLP
Sbjct: 3 ILGLDVGSRTVGVSISDPMGWTAQGVEIIRINEDDKEFGIDRLGEIIKEKNATGVVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
NMN SEGPR ++R + +I+ +P F DERLTTV A+++LI + N+SRKKR +
Sbjct: 63 KNMNNSEGPRAEASRNYAK-LIEETFGLPTDFQDERLTTVEAERMLIEEANISRKKRKKV 121
Query: 136 VDSIAAALILQEVLD 150
+D IAA ILQ LD
Sbjct: 122 IDKIAAEFILQNYLD 136
>gi|167767372|ref|ZP_02439425.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1]
gi|167711347|gb|EDS21926.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1]
Length = 139
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D GTK +G+A+SD A P + RK K+ +T + + N+ ++GL
Sbjct: 4 ILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYNVEKIVLGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R T +F ++ R+ + + WDERLTTV+++++L++ V R+ R +
Sbjct: 64 PKNMNNTVGERGEDTLSFRDALV-RRTGLEVILWDERLTTVASEKVLMESGVRRENRKKV 122
Query: 136 VDSIAAALILQEVLD 150
+D IAA++ILQ LD
Sbjct: 123 IDQIAASMILQGYLD 137
>gi|262283641|ref|ZP_06061406.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
gi|262260698|gb|EEY79399.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
Length = 139
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP A + + + + E L + E + F+IGLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV ++RA+ + + +P + DERLTTV+A+++LI+ +VSR KR +
Sbjct: 63 KNMNNTSGPRVEASRAYGAKVTEL-FGLPVEYQDERLTTVAAERMLIEQADVSRNKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|299144217|ref|ZP_07037297.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298518702|gb|EFI42441.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 140
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I +D+G K IG+A+SD A P + R+ Q ++ + I NIA ++GLP
Sbjct: 6 EKILGLDIGDKWIGVAVSDLLGITAQPLVTIKRESNKQAYEDIYNLIKENNIAKVVVGLP 65
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GP+ F + K V ++ DER+TT+SA +ILI+ V R+ R Q V
Sbjct: 66 KNMNNTLGPQSEKVLKFSEKL-KNKYGVEIIYIDERMTTISANRILIEGEVRRENRKQYV 124
Query: 137 DSIAAALILQEVLD 150
D IAA ILQ LD
Sbjct: 125 DKIAATYILQTYLD 138
>gi|302023160|ref|ZP_07248371.1| Holliday junction resolvase-like protein [Streptococcus suis
05HAS68]
gi|330831916|ref|YP_004400741.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
gi|319757235|gb|ADV69177.1| Holliday junction resolvase-like protein [Streptococcus suis JS14]
gi|329306139|gb|AEB80555.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
Length = 136
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 86/134 (64%), Gaps = 4/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
+D+G+K +G+AISDP A + + ++ + LE L+ + + F++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN + GPRV +++A+ +++ + +P + DERLTTV+A+++LI+ ++SR KR + +D
Sbjct: 62 MNNTSGPRVEASQAY-GDLLTERYKLPVDYQDERLTTVAAERMLIEQADISRGKRKKVID 120
Query: 138 SIAAALILQEVLDR 151
+AA LILQ LDR
Sbjct: 121 KLAAQLILQNYLDR 134
>gi|288870608|ref|ZP_06114688.2| putative holliday junction resolvase [Clostridium hathewayi DSM
13479]
gi|288866578|gb|EFC98876.1| putative holliday junction resolvase [Clostridium hathewayi DSM
13479]
Length = 161
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+A+SD A + R+ K+ +T + I I ++G
Sbjct: 18 IMGLDYGSKTVGVAVSDSLGLTAQALETITREDENKLRKTCARIEELIREYEIETIVLGY 77
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G RV T +F M++R+ +P V WDERLTTV +++IL + V R+ R
Sbjct: 78 PKNMNNTLGDRVEKTESF-KAMLERRTGLPVVLWDERLTTVQSERILQESGVRRENRKAV 136
Query: 136 VDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 137 IDKVAAGLILQGYLD 151
>gi|157693142|ref|YP_001487604.1| Holliday junction resolvase-like protein [Bacillus pumilus
SAFR-032]
gi|194017226|ref|ZP_03055838.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
gi|167012693|sp|A8FFM7|RUVX_BACP2 RecName: Full=Putative Holliday junction resolvase
gi|157681900|gb|ABV63044.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Bacillus pumilus SAFR-032]
gi|194011094|gb|EDW20664.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
Length = 138
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +DLGTK +G+AISD G + + L LS I ++ ++G P
Sbjct: 3 ILGLDLGTKTLGVAISDEMGWTAQGIETIKIDEAGGDFGLSRLSEIVSQYGTDKIVLGFP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR ++++F +++ VP V WDERL+T++A+++LI +VSR+KR + +
Sbjct: 63 KNMNGTVGPRGEASQSFAK-VLENTYNVPVVLWDERLSTMAAEKMLISADVSRQKRKKVI 121
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD ++
Sbjct: 122 DKMAAVMILQGYLDSLN 138
>gi|283782872|ref|YP_003373626.1| RNAse YqgF [Gardnerella vaginalis 409-05]
gi|298253345|ref|ZP_06977137.1| endonuclease [Gardnerella vaginalis 5-1]
gi|283441449|gb|ADB13915.1| RNAse YqgF [Gardnerella vaginalis 409-05]
gi|297532740|gb|EFH71626.1| endonuclease [Gardnerella vaginalis 5-1]
Length = 152
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 74/143 (51%), Gaps = 13/143 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
IDLG R+GLA+SDPG FAHP V E+L I N+ +IGLPL +
Sbjct: 5 GIDLGDARVGLALSDPGLTFAHPIGNVQVFGDSFHAIDEVLEVIEDNNVEKVVIGLPLQL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKV-----------YVPFVFW-DERLTTVSAQQILIDMNV 127
+G+EG + N+I R Y+P V W DERLTTVSA + L+ ++
Sbjct: 65 DGTEGKSAKKALRWGKNLIKRMQILHDEKDWALDYMPEVVWKDERLTTVSAHRQLLQADL 124
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
S KK VD +A LILQ LD
Sbjct: 125 STKKHRPMVDQQSAVLILQSALD 147
>gi|167037467|ref|YP_001665045.1| Holliday junction resolvase-like protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115881|ref|YP_004186040.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|226695311|sp|B0K996|RUVX_THEP3 RecName: Full=Putative Holliday junction resolvase
gi|166856301|gb|ABY94709.1| Holliday junction resolvase YqgF [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928972|gb|ADV79657.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 139
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+AISD A + R + + I + I+GLP N
Sbjct: 3 IMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137
MNG+ GP+ FV ++ +P + WDERLTTV AQ++LI+ ++SR KR + +D
Sbjct: 63 MNGTLGPQGQKVMRFVEHL-KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEVID 121
Query: 138 SIAAALILQEVLD 150
+AA LILQ LD
Sbjct: 122 KLAAVLILQNYLD 134
>gi|294501347|ref|YP_003565047.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551]
gi|295706694|ref|YP_003599769.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319]
gi|294351284|gb|ADE71613.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551]
gi|294804353|gb|ADF41419.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319]
Length = 138
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +D+GTK IG+A+SD A + +++ Q+ L I ++ ++GLP
Sbjct: 3 VLGLDVGTKTIGVAVSDEMGWTAQGIETIKIADEQMEQSYPRLQQLIDEYSVEKIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR + F N + K+ + + WDERL+T++A+++L+ +VSRKKR + +
Sbjct: 63 KNMNGTIGPRGEACIEFADN-VKEKLNIETMMWDERLSTMAAERVLLSADVSRKKRKKVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVMILQGYLD 135
>gi|162148752|ref|YP_001603213.1| Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl
5]
gi|209545482|ref|YP_002277711.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus
PAl 5]
gi|189046098|sp|A9HRJ3|RUVX_GLUDA RecName: Full=Putative Holliday junction resolvase
gi|161787329|emb|CAP56923.1| putative Holliday junction resolvase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533159|gb|ACI53096.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus
PAl 5]
Length = 154
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 82/139 (58%), Gaps = 2/139 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L +Q + +D G K IGLA+SD A P L R K++ A E+ E + +
Sbjct: 13 LGRDQRLLGLDPGQKTIGLALSDVSLMLASPYGALRRGKLSVVAAEIRRIAAREGVGGLV 72
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131
GLPL+M+GS GP + R ++ ++ + +V +P WDERL++ + ++LI D +++R++
Sbjct: 73 SGLPLSMDGSFGPAAQAARDWMISLSE-QVGLPAAMWDERLSSSAVNRMLIQDADMTRQR 131
Query: 132 RIQKVDSIAAALILQEVLD 150
R + VD +AA+ +LQ LD
Sbjct: 132 RAELVDKLAASYMLQGALD 150
>gi|197303729|ref|ZP_03168766.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC
29176]
gi|197297249|gb|EDY31812.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC
29176]
Length = 148
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D GTK +G+AISD + A + RK K+ +T + I + ++G
Sbjct: 3 IMGLDYGTKTVGVAISDALKITAQGIETIQRKEENKLRKTCARIEQLIKEYEVEKIVLGF 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MN G R + F M++R+ + V WDERLTTV+A++ LI+ +V R+ R Q
Sbjct: 63 PKHMNNDVGERAEKSLEF-KAMLERRTGLEVVMWDERLTTVAAERTLIESSVRRENRKQY 121
Query: 136 VDSIAAALILQEVLDRISFLESSKG 160
VD IAA ILQ LD +S + G
Sbjct: 122 VDKIAAVFILQGYLDLLSMRNGADG 146
>gi|225574862|ref|ZP_03783472.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM
10507]
gi|225037936|gb|EEG48182.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM
10507]
Length = 152
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+A+SDP A + RK K+ QT + + I + ++GL
Sbjct: 3 ILGLDFGSKTVGVAVSDPLGLTAQGVEIIRRKSENKLRQTLARIEALIQEYEVETLVLGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R + F +M+ R+ +P V WDERLTTV A + L++ V R+ R
Sbjct: 63 PKNMNNTMGDRAQKSLEF-RDMLVRRTGLPVVMWDERLTTVEANRTLMESGVRRENRKDY 121
Query: 136 VDSIAAALILQEVLD 150
VD +AA ILQ LD
Sbjct: 122 VDELAAIFILQGYLD 136
>gi|326791231|ref|YP_004309052.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427]
gi|326541995|gb|ADZ83854.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427]
Length = 139
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFIIGL 75
I +D GTK G+AISDP A + R++ + T + T + ++GL
Sbjct: 3 ILGLDFGTKTTGVAISDPMGWTAQGLEIIRRQEDEHLKATMKRIEEICTAYKVEKIVLGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R T F + + K+ +P WDERL+TV+A+Q+L++ ++SRKKR
Sbjct: 63 PKNMNNTLGERGEKTLLFKEKL-ENKLKIPVETWDERLSTVAAEQVLLEADMSRKKRKNV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 122 IDKLAATIILQNYLD 136
>gi|168702140|ref|ZP_02734417.1| hypothetical protein GobsU_21610 [Gemmata obscuriglobus UQM 2246]
Length = 169
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 73/144 (50%), Gaps = 7/144 (4%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITTENIA 69
S P + +D GTKRIG+A+ DP R A P V + E A
Sbjct: 10 SFPPRGALLGVDYGTKRIGVAVCDPDRVIASP----VGTQANDATREPYFRDLCARSKFA 65
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++GLPL+ +G E P RAF + D +P V WDER T+ +A+ L+ ++R
Sbjct: 66 GVVVGLPLHASGEESPMSGEARAFARWLSDL-TGLPVVMWDERHTSFAAESALLGAGLTR 124
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
KKR +KVD +AA +ILQ +D S
Sbjct: 125 KKRKEKVDRVAAQMILQTFIDAGS 148
>gi|327439564|dbj|BAK15929.1| predicted endonuclease [Solibacillus silvestris StLB046]
Length = 138
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 81/134 (60%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISD G + + + +E ++ + E N+ F++G P
Sbjct: 3 IMGLDVGSKTVGVAISDALGWTAQGIETIKIDEAAGEFGIERINELVKEHNVTEFVVGYP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GPR ++ ++ +++ P WDER+TT++A+++LI+ +VSRKKR Q +
Sbjct: 63 KNMNNTIGPRGEASESY-KKLLEDTFGFPVKLWDERMTTMAAERMLIEADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVMILQGYLD 135
>gi|291549894|emb|CBL26156.1| conserved hypothetical protein TIGR00250 [Ruminococcus torques
L2-14]
Length = 145
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 4/144 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
+ +D GTK +G+AISDP A + RK K+ +T + I + ++G
Sbjct: 3 VMGLDYGTKTVGVAISDPLGLTAQGIETIQRKEENKLRRTCARIEELIKEYQVEKIVLGF 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MN G R + F +M+ R+ + + WDERLTTV+A+Q LI+ V R+ R Q
Sbjct: 63 PKHMNNDIGERAQKSLEF-RDMLVRRTGLEVIMWDERLTTVAAEQTLIESGVRRENRKQY 121
Query: 136 VDSIAAALILQEVLDRISFLESSK 159
VD IAA ILQ LD I ++++
Sbjct: 122 VDKIAAVFILQGYLDSIYMQKTAE 145
>gi|30264456|ref|NP_846833.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Ames]
gi|42783515|ref|NP_980762.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC
10987]
gi|47529912|ref|YP_021261.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
'Ames Ancestor']
gi|49187278|ref|YP_030530.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Sterne]
gi|49478623|ref|YP_038437.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52141120|ref|YP_085709.1| Holliday junction resolvase-like protein [Bacillus cereus E33L]
gi|65321754|ref|ZP_00394713.1| COG0816: Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Bacillus anthracis str. A2012]
gi|118479548|ref|YP_896699.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
str. Al Hakam]
gi|165872754|ref|ZP_02217382.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0488]
gi|167638500|ref|ZP_02396776.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0193]
gi|177653215|ref|ZP_02935467.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0174]
gi|190566960|ref|ZP_03019876.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis
Tsiankovskii-I]
gi|196034479|ref|ZP_03101888.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W]
gi|196039375|ref|ZP_03106681.1| conserved hypothetical protein TIGR00250 [Bacillus cereus
NVH0597-99]
gi|196044968|ref|ZP_03112202.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108]
gi|218905581|ref|YP_002453415.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820]
gi|225866368|ref|YP_002751746.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102]
gi|227817165|ref|YP_002817174.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
CDC 684]
gi|228917020|ref|ZP_04080580.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228929431|ref|ZP_04092452.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935707|ref|ZP_04098520.1| Holliday junction resolvase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228948100|ref|ZP_04110384.1| Holliday junction resolvase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229093457|ref|ZP_04224560.1| Holliday junction resolvase [Bacillus cereus Rock3-42]
gi|229123927|ref|ZP_04253119.1| Holliday junction resolvase [Bacillus cereus 95/8201]
gi|229158002|ref|ZP_04286073.1| Holliday junction resolvase [Bacillus cereus ATCC 4342]
gi|229186626|ref|ZP_04313787.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1]
gi|229603692|ref|YP_002868674.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0248]
gi|254684142|ref|ZP_05148002.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
CNEVA-9066]
gi|254724687|ref|ZP_05186470.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
A1055]
gi|254736489|ref|ZP_05194195.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Western North America USA6153]
gi|254741527|ref|ZP_05199214.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Kruger B]
gi|254757706|ref|ZP_05209733.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Australia 94]
gi|300119207|ref|ZP_07056904.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1]
gi|301055895|ref|YP_003794106.1| holliday junction resolvase-like protein [Bacillus anthracis CI]
gi|33301603|sp|Q81LK2|RUVX_BACAN RecName: Full=Putative Holliday junction resolvase
gi|62900956|sp|Q634F8|RUVX_BACCZ RecName: Full=Putative Holliday junction resolvase
gi|62900978|sp|Q6HDD9|RUVX_BACHK RecName: Full=Putative Holliday junction resolvase
gi|62900993|sp|Q730E7|RUVX_BACC1 RecName: Full=Putative Holliday junction resolvase
gi|167012692|sp|A0RIZ9|RUVX_BACAH RecName: Full=Putative Holliday junction resolvase
gi|226725484|sp|B7JPX2|RUVX_BACC0 RecName: Full=Putative Holliday junction resolvase
gi|254767494|sp|C3P975|RUVX_BACAA RecName: Full=Putative Holliday junction resolvase
gi|254767495|sp|C3L5Z2|RUVX_BACAC RecName: Full=Putative Holliday junction resolvase
gi|254767496|sp|C1EST1|RUVX_BACC3 RecName: Full=Putative Holliday junction resolvase
gi|30259114|gb|AAP28319.1| RNAse H-fold protein YqgF [Bacillus anthracis str. Ames]
gi|42739444|gb|AAS43370.1| conserved hypothetical protein TIGR00250 [Bacillus cereus ATCC
10987]
gi|47505060|gb|AAT33736.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
'Ames Ancestor']
gi|49181205|gb|AAT56581.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
Sterne]
gi|49330179|gb|AAT60825.1| conserved hypothetical protein, possible Holliday junction
resolvase [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51974589|gb|AAU16139.1| conserved hypothetical protein; possible Holliday junction
resolvase [Bacillus cereus E33L]
gi|118418773|gb|ABK87192.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|164711530|gb|EDR17079.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0488]
gi|167513348|gb|EDR88718.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0193]
gi|172081497|gb|EDT66569.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0174]
gi|190561951|gb|EDV15920.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis
Tsiankovskii-I]
gi|195993021|gb|EDX56980.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W]
gi|196024456|gb|EDX63129.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108]
gi|196030002|gb|EDX68603.1| conserved hypothetical protein TIGR00250 [Bacillus cereus
NVH0597-99]
gi|218535867|gb|ACK88265.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820]
gi|225789273|gb|ACO29490.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102]
gi|227007492|gb|ACP17235.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
CDC 684]
gi|228596885|gb|EEK54544.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1]
gi|228625455|gb|EEK82211.1| Holliday junction resolvase [Bacillus cereus ATCC 4342]
gi|228659229|gb|EEL14877.1| Holliday junction resolvase [Bacillus cereus 95/8201]
gi|228689928|gb|EEL43732.1| Holliday junction resolvase [Bacillus cereus Rock3-42]
gi|228811458|gb|EEM57795.1| Holliday junction resolvase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228823945|gb|EEM69764.1| Holliday junction resolvase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830219|gb|EEM75835.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228842627|gb|EEM87715.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229268100|gb|ACQ49737.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0248]
gi|298723427|gb|EFI64172.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1]
gi|300378064|gb|ADK06968.1| holliday junction resolvase-like protein [Bacillus cereus biovar
anthracis str. CI]
gi|324328290|gb|ADY23550.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 137
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+GTK +G+AISD G + ++ Q + +S + ++ ++GLP
Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q +
Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVVILQGFLD 135
>gi|295399319|ref|ZP_06809301.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius
C56-YS93]
gi|312110120|ref|YP_003988436.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1]
gi|294978785|gb|EFG54381.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius
C56-YS93]
gi|311215221|gb|ADP73825.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1]
Length = 138
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 82/132 (62%), Gaps = 3/132 (2%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+DLGTK +G+A+SD G + ++ + L+ L I E + ++G P N
Sbjct: 5 GLDLGTKTLGVAVSDELGWTAQGIETISIDEEQGEYGLKRLREIIDEYKVDTIVVGFPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GPR +++ F +++++ +P + WDERL+T++A+++LI +VSRKKR + +D
Sbjct: 65 MNGTVGPRAEASQRFAK-ILEQEFALPVILWDERLSTMAAERMLIAADVSRKKRRKVIDK 123
Query: 139 IAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 124 MAAVVILQSYLD 135
>gi|159900150|ref|YP_001546397.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus ATCC
23779]
gi|159893189|gb|ABX06269.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus ATCC
23779]
Length = 158
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G KRIG+A+ DP R A +P L + + +LL IT + +IGLPL
Sbjct: 10 IIALDVGNKRIGVAMCDPDRIIASGQPTLPAQPTDKAYAQLLHMITEHEVVEVVIGLPLT 69
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ G G + + +AF + +++ +P +DER T+V A++ L M + + K VD
Sbjct: 70 LRGEVGAQAKAVQAFSRGL-EKRTKIPITLYDERFTSVEAERSLEAMGIKKSKHRDHVDE 128
Query: 139 IAAALILQEVLDRIS 153
+AA LILQ+ + I+
Sbjct: 129 LAAILILQDYMSSIA 143
>gi|326390159|ref|ZP_08211720.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
200]
gi|325993807|gb|EGD52238.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
200]
Length = 139
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+AISD A + R + + I + I+GLP N
Sbjct: 3 IMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137
MNG+ GP+ FV ++ + +P + WDERLTTV A+++LI+ ++SR KR + +D
Sbjct: 63 MNGTLGPQGQKVVRFVEHL-KEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVID 121
Query: 138 SIAAALILQEVLD 150
+AA LILQ LD
Sbjct: 122 KLAAVLILQNYLD 134
>gi|253681805|ref|ZP_04862602.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
gi|253561517|gb|EES90969.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
Length = 135
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+A+SDP A + RK++ + E+ I I GLP N
Sbjct: 3 ILGLDVGNKTIGVAVSDPLGFTAQGITTVHRKELEEDIQEIDKICHEYKIELIISGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G + F +++ K+ +P WDERLTTV+A + +++ N+SR KR + VD
Sbjct: 63 MNGTIGEQGEKVLEFC-DVLKEKLDIPIKMWDERLTTVAAHKAMLEANLSRAKRKKIVDK 121
Query: 139 IAAALILQEVLDRI 152
IAA ILQ LD I
Sbjct: 122 IAATYILQGYLDSI 135
>gi|327467925|gb|EGF13415.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK330]
Length = 139
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ + LE L + E + F+IGLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ +VSR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADVSRSKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|138896124|ref|YP_001126577.1| hypothetical protein GTNG_2487 [Geobacillus thermodenitrificans
NG80-2]
gi|196250077|ref|ZP_03148771.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16]
gi|167012727|sp|A4IR78|RUVX_GEOTN RecName: Full=Putative Holliday junction resolvase
gi|134267637|gb|ABO67832.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
gi|196210261|gb|EDY05026.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16]
Length = 138
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+DLGTK +G+A+SD G + ++ E L I E + ++G P N
Sbjct: 5 GLDLGTKTLGVAVSDEFGWTAQGLETIAIDEERGHYGFERLRAIIDEYGVDTIVVGWPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GPR ++ F + + + +P V WDERL+T++A+++LI +VSRKKR + +D
Sbjct: 65 MNGTLGPRAEASERFAAKLRE-EFSLPVVLWDERLSTMAAERMLIAADVSRKKRRKVIDK 123
Query: 139 IAAALILQEVLD 150
+AAA+ILQ LD
Sbjct: 124 MAAAVILQSYLD 135
>gi|188587786|ref|YP_001920521.1| Holliday junction resolvase-like protein [Clostridium botulinum E3
str. Alaska E43]
gi|251780381|ref|ZP_04823301.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|226725502|sp|B2V3W4|RUVX_CLOBA RecName: Full=Putative Holliday junction resolvase
gi|188498067|gb|ACD51203.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
gi|243084696|gb|EES50586.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 137
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
I +DLG K IG+AISDP F +R+ + +E L I E + +IGLP
Sbjct: 3 ILGLDLGKKTIGVAISDP-LGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP + +++ + + FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTIGPS-GEIAMEMGKLVEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
+A+ ILQ LDRIS
Sbjct: 121 KVASTYILQGYLDRIS 136
>gi|47566574|ref|ZP_00237396.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus
G9241]
gi|206969800|ref|ZP_03230754.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134]
gi|228941554|ref|ZP_04104103.1| Holliday junction resolvase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228954671|ref|ZP_04116694.1| Holliday junction resolvase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228960658|ref|ZP_04122303.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228974484|ref|ZP_04135051.1| Holliday junction resolvase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981078|ref|ZP_04141379.1| Holliday junction resolvase [Bacillus thuringiensis Bt407]
gi|228987638|ref|ZP_04147752.1| Holliday junction resolvase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229048094|ref|ZP_04193667.1| Holliday junction resolvase [Bacillus cereus AH676]
gi|229081651|ref|ZP_04214146.1| Holliday junction resolvase [Bacillus cereus Rock4-2]
gi|229180662|ref|ZP_04308002.1| Holliday junction resolvase [Bacillus cereus 172560W]
gi|229192598|ref|ZP_04319559.1| Holliday junction resolvase [Bacillus cereus ATCC 10876]
gi|296504877|ref|YP_003666577.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
BMB171]
gi|47556604|gb|EAL14936.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus
G9241]
gi|206735488|gb|EDZ52656.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134]
gi|228590905|gb|EEK48763.1| Holliday junction resolvase [Bacillus cereus ATCC 10876]
gi|228602807|gb|EEK60288.1| Holliday junction resolvase [Bacillus cereus 172560W]
gi|228701655|gb|EEL54146.1| Holliday junction resolvase [Bacillus cereus Rock4-2]
gi|228723249|gb|EEL74621.1| Holliday junction resolvase [Bacillus cereus AH676]
gi|228772098|gb|EEM20550.1| Holliday junction resolvase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228778619|gb|EEM26885.1| Holliday junction resolvase [Bacillus thuringiensis Bt407]
gi|228785201|gb|EEM33213.1| Holliday junction resolvase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228799022|gb|EEM45994.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228804998|gb|EEM51594.1| Holliday junction resolvase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228818110|gb|EEM64186.1| Holliday junction resolvase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|296325929|gb|ADH08857.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
BMB171]
gi|326942168|gb|AEA18064.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 137
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+GTK +G+AISD G + ++ + +S + N+ ++GLP
Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q +
Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVVILQGFLD 135
>gi|323142335|ref|ZP_08077167.1| RNAse H domain protein, YqgF family [Phascolarctobacterium sp. YIT
12067]
gi|322413219|gb|EFY04106.1| RNAse H domain protein, YqgF family [Phascolarctobacterium sp. YIT
12067]
Length = 140
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+D+GT+ IG+A+SD A+ + R + + I + ++G P NMN
Sbjct: 5 SLDVGTRTIGIAVSDLLGMIANGVETIHRTTEERDYARIAELIAEHEVDTLVVGYPKNMN 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ G R + A + V V WDERL+TV+A+++L+D ++ RKKR + +D +A
Sbjct: 65 GTIGERAQACEAMAEKLRTMFPKVQVVLWDERLSTVAAEKVLVDADLRRKKRKKVIDMMA 124
Query: 141 AALILQEVLDRISF 154
A +ILQ LD SF
Sbjct: 125 AVVILQNYLDSKSF 138
>gi|15894957|ref|NP_348306.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum ATCC 824]
gi|32130056|sp|Q97IG1|RUVX_CLOAB RecName: Full=Putative Holliday junction resolvase
gi|15024643|gb|AAK79646.1|AE007678_2 Predicted endonuclease involved in recombination [Clostridium
acetobutylicum ATCC 824]
Length = 135
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID+G K IG+A+SDP A + RK + EL + + GLP N
Sbjct: 3 ILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G + F +I + + VP WDERLTTV+A + +++ ++SRKKR + VD
Sbjct: 63 MNGTIGFQSEKVLGFCE-VIKQNINVPIKMWDERLTTVTANRAMLEADLSRKKRKKLVDK 121
Query: 139 IAAALILQEVLDRI 152
+AA ILQ L+ I
Sbjct: 122 VAATYILQGYLNSI 135
>gi|242278598|ref|YP_002990727.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM
2638]
gi|259495701|sp|C6C125|RUVX_DESAD RecName: Full=Putative Holliday junction resolvase
gi|242121492|gb|ACS79188.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM
2638]
Length = 135
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 83/135 (61%), Gaps = 5/135 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
+ SID GTKR+GLAISDP + FA P+ V ++ T+ A+ ELL I E + +IGLP
Sbjct: 3 VLSIDFGTKRVGLAISDPDQIFAF--PYKVMERTTRDAMFSELLEIIENEKVGDIVIGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+++G + R F ++ +R+V +P DERL++++A+ L + + +KR + +
Sbjct: 61 LSLDGEDTLTTRQVRNFAASL-ERRVDLPIHLVDERLSSIAAEDELKEAGLWDRKRKKNL 119
Query: 137 DSIAAALILQEVLDR 151
DS AA +IL+ L R
Sbjct: 120 DSQAAKIILETWLAR 134
>gi|289578245|ref|YP_003476872.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
gi|289527958|gb|ADD02310.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
Length = 139
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+AISD A + R + + I + I+GLP N
Sbjct: 3 IMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
MNG+ GP+ FV ++ +K + +P + WDERLTTV A+++LI+ ++SR KR + +
Sbjct: 63 MNGTLGPQGQKVVRFVEHL--KKAFSIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 121 DKLAAVLILQNYLD 134
>gi|228993125|ref|ZP_04153047.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442]
gi|228999173|ref|ZP_04158755.1| Holliday junction resolvase [Bacillus mycoides Rock3-17]
gi|229006721|ref|ZP_04164355.1| Holliday junction resolvase [Bacillus mycoides Rock1-4]
gi|228754582|gb|EEM03993.1| Holliday junction resolvase [Bacillus mycoides Rock1-4]
gi|228760790|gb|EEM09754.1| Holliday junction resolvase [Bacillus mycoides Rock3-17]
gi|228766584|gb|EEM15225.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442]
Length = 137
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+GTK +G+AISD G + ++ Q + +S + N+ I+GLP
Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYNVDKIIVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR + + F ++ + + + + WDERL+T++A+++LI +VSRKKR Q +
Sbjct: 63 KNMNGTIGPRGEACQQFAQSLREL-LQLDVMMWDERLSTMAAERLLISADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVVILQGYLD 135
>gi|150390226|ref|YP_001320275.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens
QYMF]
gi|149950088|gb|ABR48616.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens
QYMF]
Length = 138
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G + IG+AISD A + R + + L I + ++GLP N
Sbjct: 4 IIGLDVGDRTIGIAISDLMGWTAQGVETIQRISIKKDLQRLEELIAQYEVKKILVGLPKN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP+ FV + +++ + V WDERL+TV+A++ LI +VSRKKR Q +D
Sbjct: 64 MNGTIGPQGEKVLLFVERL-EKRFKLEVVTWDERLSTVAAEKFLIGADVSRKKRKQVIDK 122
Query: 139 IAAALILQEVLDRIS 153
+AA ILQ LD IS
Sbjct: 123 LAAVHILQGYLDSIS 137
>gi|18310760|ref|NP_562694.1| Holliday junction resolvase-like protein [Clostridium perfringens
str. 13]
gi|110799090|ref|YP_696464.1| Holliday junction resolvase-like protein [Clostridium perfringens
ATCC 13124]
gi|110803306|ref|YP_699063.1| Holliday junction resolvase-like protein [Clostridium perfringens
SM101]
gi|168207854|ref|ZP_02633859.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E
str. JGS1987]
gi|168211403|ref|ZP_02637028.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B
str. ATCC 3626]
gi|168214255|ref|ZP_02639880.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
CPE str. F4969]
gi|168218243|ref|ZP_02643868.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
NCTC 8239]
gi|182625715|ref|ZP_02953484.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D
str. JGS1721]
gi|32130045|sp|Q8XJH8|RUVX_CLOPE RecName: Full=Putative Holliday junction resolvase
gi|118597205|sp|Q0TPH6|RUVX_CLOP1 RecName: Full=Putative Holliday junction resolvase
gi|118597206|sp|Q0SS44|RUVX_CLOPS RecName: Full=Putative Holliday junction resolvase
gi|18145441|dbj|BAB81484.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110673737|gb|ABG82724.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
ATCC 13124]
gi|110683807|gb|ABG87177.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
SM101]
gi|170660825|gb|EDT13508.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E
str. JGS1987]
gi|170710607|gb|EDT22789.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B
str. ATCC 3626]
gi|170714263|gb|EDT26445.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
CPE str. F4969]
gi|177909117|gb|EDT71592.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D
str. JGS1721]
gi|182379748|gb|EDT77227.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
NCTC 8239]
Length = 137
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G+K IG+A+SDP A + R T+ ++ + + G+P N
Sbjct: 3 ILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVAGMPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP + I++ FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 63 MNGTIGPSGEMVKNLCEQ-IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVDK 121
Query: 139 IAAALILQEVLDRIS 153
IAA ILQ LDRIS
Sbjct: 122 IAATYILQGYLDRIS 136
>gi|227514537|ref|ZP_03944586.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum
ATCC 14931]
gi|227087094|gb|EEI22406.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum
ATCC 14931]
Length = 145
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 84/134 (62%), Gaps = 4/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
+D+G+K +G+A SDP A + + ++ LE ++ + + +A F++GLP N
Sbjct: 5 GLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
MN +EGPRV + R + +++ + +P + DERLTTV A ++L+ + +VSR+K+ + +D
Sbjct: 65 MNNTEGPRVEAARHY-GELLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKKVID 123
Query: 138 SIAAALILQEVLDR 151
+AA LILQ LDR
Sbjct: 124 ELAATLILQNYLDR 137
>gi|317497454|ref|ZP_07955774.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium
5_1_63FAA]
gi|316895240|gb|EFV17402.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium
5_1_63FAA]
Length = 139
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D GTK +G+A+SD A P + RK K+ +T + + ++ ++GL
Sbjct: 4 ILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIVLGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R T +F ++ R+ + + WDERLTTV+++++L++ V R+ R +
Sbjct: 64 PKNMNNTVGERGEDTLSFRDTLV-RRTGLEVILWDERLTTVASEKVLMESGVRRENRKKV 122
Query: 136 VDSIAAALILQEVLD 150
+D IAA++ILQ LD
Sbjct: 123 IDQIAASMILQGYLD 137
>gi|323350688|ref|ZP_08086349.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
VMC66]
gi|322123108|gb|EFX94799.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
VMC66]
gi|325686737|gb|EGD28763.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK72]
gi|332363719|gb|EGJ41499.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK49]
gi|332365296|gb|EGJ43059.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1059]
Length = 139
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ + LE L + E + F+IGLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGQR-VSELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|330718936|ref|ZP_08313536.1| Holliday junction resolvase-like protein [Leuconostoc fallax KCTC
3537]
Length = 143
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIA-AFIIGLP 76
I +D+G++ +G+A+SDP A + + + + LE L I E A ++GLP
Sbjct: 3 ILGLDVGSRTVGVAVSDPMGWTAQGVEIIRIDEAAKEFGLERLGEIIQETKAKGVVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
NMN +EGPR + R + M++ + F DERLTTV A+++LI+ +VSRKKR +
Sbjct: 63 KNMNNTEGPRAQAARDYAK-MVEDNFGLSTDFQDERLTTVQAERMLIEEADVSRKKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D IAA ILQ LDR
Sbjct: 122 IDKIAAEFILQNYLDR 137
>gi|255282413|ref|ZP_05346968.1| putative holliday junction resolvase [Bryantella formatexigens DSM
14469]
gi|255266997|gb|EET60202.1| putative holliday junction resolvase [Bryantella formatexigens DSM
14469]
Length = 161
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+AISD A + R K+ QT + + I ++ ++G
Sbjct: 9 IMGLDFGSKTVGVAISDELLITAQGIEIIRRTSENKLRQTCARIETLIGEYHVGRIVLGF 68
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R + AF M++R+ +P V WDERLTTV A + L++ V R+KR
Sbjct: 69 PKNMNNTIGERAEKSLAF-KEMLERRTSLPVVMWDERLTTVEADRTLMEGGVRREKRKDY 127
Query: 136 VDSIAAALILQEVLDRISF 154
VD +AA ILQ LD ++
Sbjct: 128 VDKLAAVYILQGYLDYLAM 146
>gi|302389909|ref|YP_003825730.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM
16646]
gi|302200537|gb|ADL08107.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM
16646]
Length = 145
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 80/140 (57%), Gaps = 1/140 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G KRIG+A+SD A + R V + + + + IIGLPLN
Sbjct: 3 ILGLDVGNKRIGVAVSDELGITAQGVGVIERGDVKRDIERISEIVKRYQVKKVIIGLPLN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP+ + F + + + +WDERL+TV+A+++LID ++SR+KR +D
Sbjct: 63 MNGTLGPQGQLVKDFGEKL-RHSLNLDVEYWDERLSTVTAEKVLIDADISRRKRKGVIDK 121
Query: 139 IAAALILQEVLDRISFLESS 158
++A +ILQ LD S +++
Sbjct: 122 LSAIVILQSFLDSRSNIDTG 141
>gi|225028523|ref|ZP_03717715.1| hypothetical protein EUBHAL_02802 [Eubacterium hallii DSM 3353]
gi|224954166|gb|EEG35375.1| hypothetical protein EUBHAL_02802 [Eubacterium hallii DSM 3353]
Length = 145
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 4/133 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLPL 77
+D GTK +G+A+SD A + RK K+ QT + + I ++ ++GLP
Sbjct: 7 GLDYGTKTVGVAVSDALGITAQGVETVTRKSNKKLRQTLARIEALIEEYEVSKIVLGLPK 66
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + G R T+ F M+ R+ + V WDERLTT+ +++IL + V R+ R +++D
Sbjct: 67 NMNNTLGERAEETKEF-QAMLQRRTGLEVVLWDERLTTMESERILQEGGVRRENRKERID 125
Query: 138 SIAAALILQEVLD 150
+AA LILQ +D
Sbjct: 126 WMAATLILQSYMD 138
>gi|116491182|ref|YP_810726.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1]
gi|118587361|ref|ZP_01544787.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163]
gi|290890698|ref|ZP_06553768.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429]
gi|122276636|sp|Q04ER1|RUVX_OENOB RecName: Full=Putative Holliday junction resolvase
gi|116091907|gb|ABJ57061.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1]
gi|118432185|gb|EAV38925.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163]
gi|290479673|gb|EFD88327.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429]
Length = 144
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 83/134 (61%), Gaps = 4/134 (2%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLN 78
+D+G+K +G+A SDP G + + + + L+ L I +E ++ +IGLP N
Sbjct: 5 GLDVGSKTVGVAQSDPLGWTASSIEIIRINEAQGEFGLDRLGQIISEKKVSGIVIGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
MN +EGPRV ++R + M+ + +P + DERLT+V A ++LI + ++SR KR + +D
Sbjct: 65 MNNTEGPRVEASRNY-GKMVSERFGLPIDYQDERLTSVEANRMLIEEADLSRAKRKKVID 123
Query: 138 SIAAALILQEVLDR 151
S+AA LILQ LD+
Sbjct: 124 SLAAQLILQNYLDK 137
>gi|300854403|ref|YP_003779387.1| putative Holliday junction resolvase [Clostridium ljungdahlii DSM
13528]
gi|300434518|gb|ADK14285.1| predicted Holliday junction resolvase [Clostridium ljungdahlii DSM
13528]
Length = 137
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G + IG+A+SDP A + RK + EL S + + GLP N
Sbjct: 3 ILGLDIGDRTIGVALSDPLGITAQGITTVRRKNQEKDIEELKSICEKYGVECIVSGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G + +F +I++ + VP WDERLTTV+A + +I+ ++SR KR + VD
Sbjct: 63 MNGTLGLQSEKVLSFC-KVIEQSIKVPIKMWDERLTTVAAHRAMIEGDLSRAKRKKIVDK 121
Query: 139 IAAALILQEVLDRIS 153
+AA ILQ LD IS
Sbjct: 122 MAAIYILQGYLDSIS 136
>gi|187933084|ref|YP_001885374.1| Holliday junction resolvase-like protein [Clostridium botulinum B
str. Eklund 17B]
gi|226725503|sp|B2THN2|RUVX_CLOBB RecName: Full=Putative Holliday junction resolvase
gi|187721237|gb|ACD22458.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
17B]
Length = 137
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
I +DLG K IG+A+SDP F +R+ + +E L I E + +IGLP
Sbjct: 3 ILGLDLGKKTIGVAVSDP-LGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP + +++ + + FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTIGPS-GEIAMEMGKLVEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
+A+ ILQ LDRIS
Sbjct: 121 KVASTYILQGYLDRIS 136
>gi|325688814|gb|EGD30822.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK115]
Length = 139
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ + LE L + E + F+IGLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGQRVAEL-FGLPVDYQDERLTTVAAERMLVEQADISRNKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|125719019|ref|YP_001036152.1| Holliday junction resolvase-like protein [Streptococcus sanguinis
SK36]
gi|167016514|sp|A3CQZ7|RUVX_STRSV RecName: Full=Putative Holliday junction resolvase
gi|125498936|gb|ABN45602.1| Holliday junction resolvase, putative [Streptococcus sanguinis
SK36]
Length = 139
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ + LE L + E + F+IGLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|319946059|ref|ZP_08020308.1| crossover junction endodeoxyribonuclease [Streptococcus australis
ATCC 700641]
gi|319747867|gb|EFW00112.1| crossover junction endodeoxyribonuclease [Streptococcus australis
ATCC 700641]
Length = 139
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 86/136 (63%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ + L+ LS + E + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKGEFGLDRLSELVKEYRVDRFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAY-GKRLEELFNLPVEYQDERLTTVAAERMLIEQADISRNKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|260583980|ref|ZP_05851728.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633]
gi|260158606|gb|EEW93674.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633]
Length = 140
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLP 76
+ +D+G+K +G+AISDP G ++ + ++ ++ + + +IG+P
Sbjct: 3 VMGLDVGSKTVGVAISDPLGWTAQGVETIVINEAASEFGFNRVVELVKEYEVEKIVIGMP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
NMN + GPR +++ + ++ ++++ +P VF DERLTT+ A+++L+ + NVSRKKR +
Sbjct: 63 KNMNNTAGPRAEASQKYGRSL-EKRLEIPIVFHDERLTTMQAERMLVEEANVSRKKRKEV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 122 IDKLAAVIILQNYLD 136
>gi|210622572|ref|ZP_03293254.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275]
gi|210154155|gb|EEA85161.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275]
Length = 140
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+A+SD A + R E+ I + + + GLP N
Sbjct: 6 IMGLDIGDKTIGVAVSDLMGMTAQGIKTIKRTSKKNDIEEIKQIIKEKQVNLIVSGLPKN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP+ + F +I + + FWDERLTTV+A++ LI +VSRKKR +D
Sbjct: 66 MNGTVGPQGEKVQKFCE-LIKEETGLEIEFWDERLTTVAAEKTLITADVSRKKRKNVIDM 124
Query: 139 IAAALILQEVLD 150
+AA LILQ LD
Sbjct: 125 MAAVLILQGYLD 136
>gi|324992637|gb|EGC24558.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK405]
gi|324995834|gb|EGC27745.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK678]
gi|325695338|gb|EGD37238.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK150]
gi|327460040|gb|EGF06379.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1]
gi|327463467|gb|EGF09786.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1057]
gi|327472186|gb|EGF17623.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK408]
gi|327488630|gb|EGF20430.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1058]
Length = 139
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ + LE L + E + F+IGLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGQRVAEL-FGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|297544525|ref|YP_003676827.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842300|gb|ADH60816.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 139
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+AISD A + R + + I + I+GLP N
Sbjct: 3 IMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
MNG+ GP+ FV ++ +K + +P + WDERLTTV A+++LI+ ++SR KR + +
Sbjct: 63 MNGTLGPQGQKVVRFVEHL--KKAFSIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 121 DKLAAILILQNYLD 134
>gi|85707967|ref|ZP_01039033.1| hypothetical protein NAP1_01990 [Erythrobacter sp. NAP1]
gi|85689501|gb|EAQ29504.1| hypothetical protein NAP1_01990 [Erythrobacter sp. NAP1]
Length = 85
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLP NM+GSEGPR ++RAF N + +P + WDER +T SA+ +I ++SRKK
Sbjct: 1 MLGLPRNMDGSEGPRAQASRAFARN-AEEAFALPLLLWDERWSTQSAEAAMIGQDMSRKK 59
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
R + +DS AAA+ILQ +DR++
Sbjct: 60 RAESIDSHAAAVILQGAIDRLA 81
>gi|158320692|ref|YP_001513199.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
gi|158140891|gb|ABW19203.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
Length = 139
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 73/133 (54%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G K IG+AISD A + R + + L I +I ++GLP NMN
Sbjct: 6 GLDVGDKTIGVAISDLFGWTAQGLETIQRIGIKKDLQRLEVIIKEHDINKIVVGLPKNMN 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ GP+ F + R V V WDERLTTV+A++ LI+ +VSRKKR + +D +A
Sbjct: 66 GTIGPQGEKVLEFNERLKGRFKDVEIVLWDERLTTVAAERSLIEADVSRKKRKEVIDKMA 125
Query: 141 AALILQEVLDRIS 153
A ILQ LD S
Sbjct: 126 AVYILQGYLDSAS 138
>gi|218513131|ref|ZP_03509971.1| holliday junction resolvase protein [Rhizobium etli 8C-3]
Length = 78
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 54/78 (69%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLN 78
F E +A F+IGLP+N
Sbjct: 61 DFAAKERVAGFVIGLPMN 78
>gi|157151461|ref|YP_001451289.1| Holliday junction resolvase-like protein [Streptococcus gordonii
str. Challis substr. CH1]
gi|189046109|sp|A8AZS9|RUVX_STRGC RecName: Full=Putative Holliday junction resolvase
gi|157076255|gb|ABV10938.1| conserved hypothetical protein TIGR00250 [Streptococcus gordonii
str. Challis substr. CH1]
Length = 139
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP A + + + + E L + E + F+IGLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ +VSR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGAKVTEL-FGLPVEYQDERLTTVAAERMLIEQADVSRNKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|291559331|emb|CBL38131.1| conserved hypothetical protein TIGR00250 [butyrate-producing
bacterium SSC/2]
Length = 139
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D GTK +G+A+SD A P + RK K+ +T + + ++ ++GL
Sbjct: 4 ILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIVLGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R T +F ++ R+ + + WDERLTTV+++++L++ V R+ R +
Sbjct: 64 PKNMNNTVGERGEDTLSFRDALV-RRTGLEVILWDERLTTVASEKVLMESGVRRENRKKV 122
Query: 136 VDSIAAALILQEVLD 150
+D IAA++ILQ LD
Sbjct: 123 IDQIAASMILQGYLD 137
>gi|330994858|ref|ZP_08318780.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1]
gi|329758119|gb|EGG74641.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1]
Length = 246
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + I L L+ +Q + +D G K IG+A+SD G A P L R K++ A ++
Sbjct: 84 MPLFNISHLRTLLRRDQRLLGLDPGRKTIGVALSDVGLMLASPHTGLKRAKLSVNAAQIS 143
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ +++ ++GLPL+++GS GP + R + N+ + +P WDERL++ + +
Sbjct: 144 TIARAQDVGGLVVGLPLSLDGSFGPAAQAARDWTLNLSE-LTGLPAAMWDERLSSSAVNR 202
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
LI + +++R++R VD +AAA ILQ LD
Sbjct: 203 FLIAEADMTRQRRGAVVDQMAAAYILQAALD 233
>gi|251783469|ref|YP_002997774.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242392101|dbj|BAH82560.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|322412847|gb|EFY03755.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
gi|323128215|gb|ADX25512.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 139
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ + E L + + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKEEFGFERLGELVKQYQVDQFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ I+ +P + DERLTTV A+++LI+ +VSR KR +
Sbjct: 63 KNMNNTSGPRVEASKAYGEK-IESLFSLPVHYQDERLTTVEAERMLIEQADVSRGKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|167040129|ref|YP_001663114.1| Holliday junction resolvase-like protein [Thermoanaerobacter sp.
X514]
gi|256752542|ref|ZP_05493398.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914213|ref|ZP_07131529.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
gi|307724552|ref|YP_003904303.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
gi|226695312|sp|B0K0Q3|RUVX_THEPX RecName: Full=Putative Holliday junction resolvase
gi|166854369|gb|ABY92778.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X514]
gi|256748608|gb|EEU61656.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889148|gb|EFK84294.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
gi|307581613|gb|ADN55012.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
Length = 139
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+AISD A + R + + I + I+GLP N
Sbjct: 3 IMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137
+NG+ GP+ FV ++ + +P + WDERLTTV A+++LI+ ++SR KR + +D
Sbjct: 63 LNGTLGPQGQKVVRFVEHL-KEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVID 121
Query: 138 SIAAALILQEVLD 150
+AA LILQ LD
Sbjct: 122 KLAAVLILQNYLD 134
>gi|153854408|ref|ZP_01995686.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814]
gi|149752934|gb|EDM62865.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814]
Length = 146
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+A+SDP A + RK K+ +T + + I + ++GL
Sbjct: 5 IMGLDYGSKTVGVAVSDPLGITAQGVETICRKDENKLRKTCARIEALIEEYQVTKIVLGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MN G R + AF M+ R+ + V WDERLTTV A++ LI+ V R+ R +
Sbjct: 65 PKHMNNDIGDRAEKSMAF-GEMLKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKKY 123
Query: 136 VDSIAAALILQEVLDRIS 153
+D IAA ILQ LD ++
Sbjct: 124 IDKIAAVFILQGYLDSLA 141
>gi|324989653|gb|EGC21597.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK353]
Length = 139
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP A + + + + LE L + E + F+IGLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|218899555|ref|YP_002447966.1| hypothetical protein TIGR00250 [Bacillus cereus G9842]
gi|228902914|ref|ZP_04067055.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222]
gi|228910222|ref|ZP_04074040.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200]
gi|228967461|ref|ZP_04128490.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|229098858|ref|ZP_04229794.1| Holliday junction resolvase [Bacillus cereus Rock3-29]
gi|229105020|ref|ZP_04235674.1| Holliday junction resolvase [Bacillus cereus Rock3-28]
gi|226725485|sp|B7IYP0|RUVX_BACC2 RecName: Full=Putative Holliday junction resolvase
gi|218541329|gb|ACK93723.1| conserved hypothetical protein TIGR00250 [Bacillus cereus G9842]
gi|228678397|gb|EEL32620.1| Holliday junction resolvase [Bacillus cereus Rock3-28]
gi|228684531|gb|EEL38473.1| Holliday junction resolvase [Bacillus cereus Rock3-29]
gi|228792238|gb|EEM39811.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228849386|gb|EEM94222.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200]
gi|228856698|gb|EEN01217.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222]
Length = 137
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+GTK +G+A+SD G + ++ + +S + N+ ++GLP
Sbjct: 3 ILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q +
Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVVILQGFLD 135
>gi|163942136|ref|YP_001647020.1| Holliday junction resolvase-like protein [Bacillus
weihenstephanensis KBAB4]
gi|229013604|ref|ZP_04170735.1| Holliday junction resolvase [Bacillus mycoides DSM 2048]
gi|229032036|ref|ZP_04188019.1| Holliday junction resolvase [Bacillus cereus AH1271]
gi|229062082|ref|ZP_04199407.1| Holliday junction resolvase [Bacillus cereus AH603]
gi|229135209|ref|ZP_04264008.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196]
gi|229169130|ref|ZP_04296845.1| Holliday junction resolvase [Bacillus cereus AH621]
gi|229175060|ref|ZP_04302578.1| Holliday junction resolvase [Bacillus cereus MM3]
gi|226725488|sp|A9VI07|RUVX_BACWK RecName: Full=Putative Holliday junction resolvase
gi|163864333|gb|ABY45392.1| Holliday junction resolvase YqgF [Bacillus weihenstephanensis
KBAB4]
gi|228608428|gb|EEK65732.1| Holliday junction resolvase [Bacillus cereus MM3]
gi|228614358|gb|EEK71468.1| Holliday junction resolvase [Bacillus cereus AH621]
gi|228648251|gb|EEL04287.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196]
gi|228717234|gb|EEL68909.1| Holliday junction resolvase [Bacillus cereus AH603]
gi|228729281|gb|EEL80275.1| Holliday junction resolvase [Bacillus cereus AH1271]
gi|228747663|gb|EEL97535.1| Holliday junction resolvase [Bacillus mycoides DSM 2048]
Length = 137
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+GTK +G+A+SD G + ++ + +S + N+ ++GLP
Sbjct: 3 ILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q +
Sbjct: 63 KNMNGTIGPRGEACQQFAENLRNL-LQLEVVMWDERLSTMAAERLLISADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVVILQGFLD 135
>gi|317122056|ref|YP_004102059.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
12885]
gi|315592036|gb|ADU51332.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
12885]
Length = 326
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 9/140 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLG++ IG+AISDP A P L R+ + A ++ + ++G P ++
Sbjct: 5 GLDLGSRVIGVAISDPEGIVARPLGSLPRRTDAENAAQVADLVRRHGAGGVVVGWPRRLD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFV-FWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G+ GP + F + R+ VP V WDERL+TV A+++LI ++SR++R Q +D +
Sbjct: 65 GTRGPEAEAAERFADAL--REAGVPRVTLWDERLSTVEAERVLIAADLSRRRRKQIIDRM 122
Query: 140 AAALILQEVLDRISFLESSK 159
AA +ILQ +FL+S +
Sbjct: 123 AATVILQ------AFLQSQR 136
>gi|291541678|emb|CBL14788.1| conserved hypothetical protein TIGR00250 [Ruminococcus bromii
L2-63]
Length = 141
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPL 77
I S+DLG R G+A+ D A P + K Q LE +S E A I+ GLP
Sbjct: 3 IMSVDLGKARTGIAVCDKTEFLASPYTVIFEKSPKQ-LLEKVSNTAKETKAELIVVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSEG + RAF N+ + + + V DER TT++A L N KKR VD
Sbjct: 62 NMDGSEGESAQNARAFAENLSN-ETGIECVMQDERGTTITAHNFLNTTNTRGKKRKNVVD 120
Query: 138 SIAAALILQEVLDR 151
+AA +ILQ+ LD+
Sbjct: 121 EVAATIILQDYLDK 134
>gi|118597213|sp|Q1WT34|RUVX_LACS1 RecName: Full=Putative Holliday junction resolvase
Length = 147
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76
+ +D+G++ +G+A+SD G + + + L+ ++ + EN + F++GLP
Sbjct: 4 LMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV + +A+ +++ K +P F DERLTTV A+++L++ + SRKKR +
Sbjct: 64 KNMNNTSGPRVEAAKAY-GELLEEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKV 122
Query: 136 VDSIAAALILQEVLD 150
+D +AA+LILQ LD
Sbjct: 123 IDKLAASLILQNYLD 137
>gi|90962084|ref|YP_536000.1| Holliday junction resolvase-like protein [Lactobacillus salivarius
UCC118]
gi|90821278|gb|ABD99917.1| Endonuclease involved in recombination [Lactobacillus salivarius
UCC118]
Length = 143
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 83/133 (62%), Gaps = 4/133 (3%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLN 78
+D+G++ +G+A+SD G + + + L+ ++ + EN + F++GLP N
Sbjct: 2 GLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN + GPRV + +A+ +++ K +P F DERLTTV A+++L++ + SRKKR + +D
Sbjct: 62 MNNTSGPRVEAAKAY-GELLEEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKVID 120
Query: 138 SIAAALILQEVLD 150
+AA+LILQ LD
Sbjct: 121 KLAASLILQNYLD 133
>gi|229163335|ref|ZP_04291287.1| Holliday junction resolvase [Bacillus cereus R309803]
gi|228620116|gb|EEK76990.1| Holliday junction resolvase [Bacillus cereus R309803]
Length = 137
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+GTK +G+A+SD G + ++ + +S + N+ ++GLP
Sbjct: 3 ILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q +
Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVVILQGFLD 135
>gi|331269728|ref|YP_004396220.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925]
gi|329126278|gb|AEB76223.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925]
Length = 135
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+A+SDP A + RK++ + E+ I I GLP N
Sbjct: 3 ILGLDIGNKTIGVAVSDPLGFTAQGITTIHRKELEKDIEEVGKICHEYKIELIISGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G + F +++ K+ +P WDERLTTV+A + +++ N+SR KR + VD
Sbjct: 63 MNGTIGEQGEKVLEFC-DVLKDKLDIPIKMWDERLTTVAAHRAMLEANLSRAKRKKIVDK 121
Query: 139 IAAALILQEVLDRI 152
IAA ILQ LD I
Sbjct: 122 IAATYILQGYLDSI 135
>gi|302380637|ref|ZP_07269102.1| Holliday junction resolvase-like protein [Finegoldia magna
ACS-171-V-Col3]
gi|303233893|ref|ZP_07320542.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4]
gi|302311580|gb|EFK93596.1| Holliday junction resolvase-like protein [Finegoldia magna
ACS-171-V-Col3]
gi|302494818|gb|EFL54575.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4]
Length = 137
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G + IG+AISDP A + RK + + I + ++ I+GLP NMN
Sbjct: 6 GLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINGIIKEKEVSKIIVGLPKNMN 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
+ GP+ + FV + + + + DERLTTVSA ++LI+ NVSRKKR +DS+A
Sbjct: 66 NTIGPQAKKVKTFVKEL-RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDVIDSVA 124
Query: 141 AALILQEVLD 150
A ILQ LD
Sbjct: 125 ATYILQTYLD 134
>gi|56421089|ref|YP_148407.1| hypothetical protein GK2554 [Geobacillus kaustophilus HTA426]
gi|261418430|ref|YP_003252112.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61]
gi|297529282|ref|YP_003670557.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3]
gi|319767610|ref|YP_004133111.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52]
gi|62900906|sp|Q5KWU7|RUVX_GEOKA RecName: Full=Putative Holliday junction resolvase
gi|56380931|dbj|BAD76839.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|261374887|gb|ACX77630.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61]
gi|297252534|gb|ADI25980.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3]
gi|317112476|gb|ADU94968.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52]
Length = 138
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+DLGTK +G+A+SD G + + L+ L I E + ++G P N
Sbjct: 5 GLDLGTKTLGVAVSDELGLTAQGLETIAIDTERGDYGLKRLRAIIDEYGVDTIVVGWPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GPR ++ F + + + +P V WDERL+T++A+++LI +VSRKKR + +D
Sbjct: 65 MNGTLGPRAEASERFAAKLRE-EFSLPVVLWDERLSTMAAERMLIAADVSRKKRRKVIDK 123
Query: 139 IAAALILQEVLD 150
+AAA+ILQ LD
Sbjct: 124 MAAAVILQSYLD 135
>gi|325697277|gb|EGD39163.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK160]
Length = 139
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP A + + + + LE L + E + F+IGLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGQRVAEL-FGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|238924257|ref|YP_002937773.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656]
gi|259495705|sp|C4ZAY4|RUVX_EUBR3 RecName: Full=Putative Holliday junction resolvase
gi|238875932|gb|ACR75639.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656]
Length = 143
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+A+SD A + RK K+ QT + I + ++G
Sbjct: 3 ILGLDFGSKTVGVAVSDELLITAQGVEIVRRKSPSKLRQTLARIEEIIAEYKVDRIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN +EG R T+ F +M+ R+ + ++WDERLTTV+A + +++ + R+ R +
Sbjct: 63 PKNMNNTEGERCEKTKEF-GDMLARRTGLEVIYWDERLTTVAADRSMMETGIRRENRKEF 121
Query: 136 VDSIAAALILQEVLDRIS 153
VD IAA ILQ LD +S
Sbjct: 122 VDEIAAIFILQGYLDYLS 139
>gi|71083767|ref|YP_266487.1| putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1062]
gi|91763197|ref|ZP_01265161.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1002]
gi|146325587|sp|Q4FLQ5|RUVX_PELUB RecName: Full=Putative Holliday junction resolvase
gi|71062880|gb|AAZ21883.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1062]
gi|91717610|gb|EAS84261.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1002]
Length = 151
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLG+KRIG++I D + A P + + + EL I NI I+G P+NM+
Sbjct: 19 GLDLGSKRIGVSICDERQSIATPFKTINKTNTNELIDELKIIIKDNNIGGIIVGNPVNMD 78
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI--LIDMNVSRKKRIQKVDS 138
GS G S N I + + +P + WDERL+TV A + L+D+NVS KR++ +D
Sbjct: 79 GSLGRSAQSVNDVASN-ISKSIDLPVILWDERLSTVGAFNLSSLLDVNVS--KRVKTIDQ 135
Query: 139 IAAALILQEVLD 150
AAA ILQ +D
Sbjct: 136 NAAAFILQGAID 147
>gi|312870461|ref|ZP_07730581.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3]
gi|311094018|gb|EFQ52342.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3]
Length = 147
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 82/134 (61%), Gaps = 3/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
+D+G+K +G+A+SDP A + + + L+ ++ + E +A F++GLP N
Sbjct: 5 GLDVGSKTVGIAVSDPLGWTAQAVEIIPIDEDEEVFGLDRVAELVDKEQVAGFVLGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
MN +EGPRV +++ + + +R +P F DERLTTV A ++L+ + ++SR K+ + +D
Sbjct: 65 MNNTEGPRVAASKHYGELLQERFPQIPIDFQDERLTTVEAHRMLVEEADISRAKQKKVID 124
Query: 138 SIAAALILQEVLDR 151
+AA ILQ LDR
Sbjct: 125 EVAATFILQSYLDR 138
>gi|292670704|ref|ZP_06604130.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
noxia ATCC 43541]
gi|292647650|gb|EFF65622.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
noxia ATCC 43541]
Length = 137
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 76/136 (55%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+D+G IG+A+SD A + R+ ++ L I A + GLP +MN
Sbjct: 2 SLDIGDATIGVAVSDLLGLTAQGVETIRRRDLSDDLNRLGVLIQEYEADALVAGLPKHMN 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG R RAF+ + +R + +WDERL+TV+A + L++ +VSRKKR + +D +A
Sbjct: 62 GQEGERCALVRAFMADAAERFPMMEIHYWDERLSTVAASRTLLEGDVSRKKRRKVIDKMA 121
Query: 141 AALILQEVLDRISFLE 156
A ILQ LDR L+
Sbjct: 122 AVYILQGFLDRQQHLK 137
>gi|258511991|ref|YP_003185425.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478717|gb|ACV59036.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 144
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID G +RIG+A+SDP A P + R+ Q A E+ E + ++G PL+M+
Sbjct: 2 AIDFGERRIGVALSDPMGLIAQPYGVIERQSDRQAADEVADLARREEVGRIVVGRPLHMS 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G F M+ + +P +DERLTTVSA++ILI+ NV R++R VD+ A
Sbjct: 62 GQPSEMTSRAEKFAR-MLAARTGLPVDLYDERLTTVSAERILIEQNVRRRERRATVDAAA 120
Query: 141 AALILQEVL 149
A ++L++ L
Sbjct: 121 AQVLLEDYL 129
>gi|288574978|ref|ZP_06393335.1| Holliday junction resolvase YqgF [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570719|gb|EFC92276.1| Holliday junction resolvase YqgF [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 138
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+GT RIG+A+SDP FA V +L +T+ +++ ++GLP+
Sbjct: 5 IVALDMGTVRIGVAMSDPLGSFAQG--VAVWDAEGDWLSDLRDLVTSRDVSTVVVGLPIR 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
NG++GP + A + + + V WDER T+ A ++LI+ +VSRKKR +VD
Sbjct: 63 ENGTKGPSAENVEAKTEAVREAFPDLEIVMWDERYTSTIANRVLIEGDVSRKKRKGQVDK 122
Query: 139 IAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 123 VAATVILQGYLD 134
>gi|153815342|ref|ZP_01968010.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756]
gi|317501696|ref|ZP_07959887.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331088419|ref|ZP_08337334.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA]
gi|145847404|gb|EDK24322.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756]
gi|316896947|gb|EFV19027.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330408186|gb|EGG87674.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA]
Length = 145
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+AISD R A + RK K+ +T + I ++ ++G
Sbjct: 3 IMGLDYGSKTVGVAISDALRLTAQAVETIERKEENKLRRTCARIEELIKKYDVEKIVLGF 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MN G R + F M+ R+ + + WDERLTTV A++ LI+ NV R+ R +
Sbjct: 63 PKHMNNDIGERAQQSMEF-GEMLKRRTGLEVILWDERLTTVEAERTLIESNVRRENRKKH 121
Query: 136 VDSIAAALILQEVLD 150
+D IAA ILQ LD
Sbjct: 122 IDQIAAVFILQGYLD 136
>gi|168186829|ref|ZP_02621464.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
gi|169295213|gb|EDS77346.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
Length = 135
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G + IG+A+SDP A + RK V + EL + I GLP N
Sbjct: 3 ILGLDVGDRTIGVAVSDPLGFTAQGVTTIHRKNVEEDIDELKKICKEYAVELIISGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G + F +++ K+ +P WDERLTTV+A + +++ N+SR KR + VD
Sbjct: 63 MNGTVGEQGEKVIEFC-DILKTKLEIPIKMWDERLTTVAAHKAMLEANLSRAKRKKIVDK 121
Query: 139 IAAALILQEVLDRI 152
+AA ILQ LD I
Sbjct: 122 MAATYILQGYLDSI 135
>gi|319651656|ref|ZP_08005783.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2]
gi|317396723|gb|EFV77434.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2]
Length = 135
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 85/132 (64%), Gaps = 3/132 (2%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLN 78
+D+G+K +G+A+SD G + ++ + E +S I E+ ++ ++GLP N
Sbjct: 2 GLDVGSKTVGVALSDAFGWTAQGLETIKISEEEKEFGFERISEIIKEHEVSKIVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GPR +++ F + +++ +P V WDERL+T++A+++L++ +VSRKKR + +D
Sbjct: 62 MNGTIGPRGEASQ-FYASELEKLFGLPVVLWDERLSTMAAERVLLEADVSRKKRKKVIDK 120
Query: 139 IAAALILQEVLD 150
+AA +ILQ L+
Sbjct: 121 MAAVMILQGFLN 132
>gi|52081220|ref|YP_080011.1| Holliday junction resolvase-like protein [Bacillus licheniformis
ATCC 14580]
gi|52786601|ref|YP_092430.1| Holliday junction resolvase-like protein [Bacillus licheniformis
ATCC 14580]
gi|319644812|ref|ZP_07999045.1| Holliday junction resolvase [Bacillus sp. BT1B_CT2]
gi|62900959|sp|Q65GS7|RUVX_BACLD RecName: Full=Putative Holliday junction resolvase
gi|52004431|gb|AAU24373.1| conserved protein YrrK [Bacillus licheniformis ATCC 14580]
gi|52349103|gb|AAU41737.1| YrrK [Bacillus licheniformis ATCC 14580]
gi|317392621|gb|EFV73415.1| Holliday junction resolvase [Bacillus sp. BT1B_CT2]
Length = 139
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76
I +DLG+K +G+A+SD G + + L L+ +T + I ++G P
Sbjct: 3 ILGLDLGSKTLGVALSDEMGWTAQGIETIKIDEAGGDYGLNRLAELTKDYVIDKIVLGFP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR +++ F +++ VP V WDERL+T++A+++LI +VSR+KR + +
Sbjct: 63 KNMNGTVGPRGEASQKFAE-VLEETFQVPVVLWDERLSTMAAERMLISADVSRQKRKKVI 121
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD ++
Sbjct: 122 DKMAAVMILQGYLDSLN 138
>gi|332365435|gb|EGJ43196.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK355]
Length = 139
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP A + + + + LE L + E + F+IGLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGQRVAEL-FGLPVDYQDERLTTVAAERMLVEQADISRSKRRKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|78044200|ref|YP_359400.1| hypothetical protein CHY_0542 [Carboxydothermus hydrogenoformans
Z-2901]
gi|146325559|sp|Q3AEN4|RUVX_CARHZ RecName: Full=Putative Holliday junction resolvase
gi|77996315|gb|ABB15214.1| conserved hypothetical protein TIGR00250 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 138
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D+G K+IG+A+SD A + R + + E+ I ++ +IG P N
Sbjct: 3 VLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYPRN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GPR + F + P VFWDERL+TV A+++LI ++SR+KR + +D
Sbjct: 63 MNGTAGPRAELVKRFARELYKFTGIKP-VFWDERLSTVEAEKLLISGDISRRKRKKVIDK 121
Query: 139 IAAALILQEVLD 150
+AA LIL L+
Sbjct: 122 LAATLILSGYLN 133
>gi|23099462|ref|NP_692928.1| hypothetical protein OB2007 [Oceanobacillus iheyensis HTE831]
gi|32130032|sp|Q8EPT1|RUVX_OCEIH RecName: Full=Putative Holliday junction resolvase
gi|22777691|dbj|BAC13963.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 137
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76
I +D+G+K IG+A+SD G + + +A E L I +E+ I IIGLP
Sbjct: 3 IIGLDVGSKTIGVAVSDALGWTAQGVKTIRWDENDLSSADEELEKIISEHEIGKAIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ G R +++ + N I++ +P WDERLTT++A+++L++ ++SR KR + +
Sbjct: 63 KNMNGTIGERGEASQRYA-NHIEKVFQIPVDLWDERLTTMAAERVLLEADMSRSKRKKVI 121
Query: 137 DSIAAALILQEVLDR 151
D +AA +ILQ LD+
Sbjct: 122 DKMAAVMILQGYLDQ 136
>gi|254519280|ref|ZP_05131336.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
gi|226913029|gb|EEH98230.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
Length = 138
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 7/139 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G+K IG+AISDP A + R K Q E+ ++ +IGLP N
Sbjct: 3 ILGLDVGSKTIGVAISDPLGWTAQGITTIRRSKKEQDIEEIKKLCKEYSVETIVIGLPKN 62
Query: 79 MNGS---EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
MNG+ G RV + +I + WDERLTTV+A + +++ ++SR KR +
Sbjct: 63 MNGTIGESGERVLE----LSEIIKEATGIKVEMWDERLTTVAAHKAMLEADLSRGKRKKI 118
Query: 136 VDSIAAALILQEVLDRISF 154
VD IAA ILQ LDR+S
Sbjct: 119 VDKIAATYILQGYLDRLSM 137
>gi|259502866|ref|ZP_05745768.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259169233|gb|EEW53728.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 147
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 82/134 (61%), Gaps = 3/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
+D+G+K +G+A+SDP A + + + L+ ++ + E +A F++GLP N
Sbjct: 5 GLDVGSKTVGVAVSDPLGWTAQAVEIIPIDEDAEVFGLDRVAELVHKEQVAGFVLGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
MN +EGPRV +++ + + +R +P F DERLTTV A ++L+ + ++SR K+ + +D
Sbjct: 65 MNNTEGPRVAASKHYGELLQERFPQLPIDFQDERLTTVEAHRMLVEEADISRAKQKKVID 124
Query: 138 SIAAALILQEVLDR 151
+AA ILQ LDR
Sbjct: 125 EVAATFILQSYLDR 138
>gi|328944731|gb|EGG38892.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1087]
Length = 139
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ LE L + E + F+IGLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGGFGLERLGELVKEYKVDKFVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGQR-IAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|229198513|ref|ZP_04325217.1| Holliday junction resolvase [Bacillus cereus m1293]
gi|228585016|gb|EEK43130.1| Holliday junction resolvase [Bacillus cereus m1293]
Length = 137
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+GTK +G+AISD G + ++ + +S + ++ ++GLP
Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYDVDKIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q +
Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVVILQGFLD 135
>gi|194398342|ref|YP_002036896.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
G54]
gi|226695305|sp|B5E6E1|RUVX_STRP4 RecName: Full=Putative Holliday junction resolvase
gi|194358009|gb|ACF56457.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
Length = 139
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGXEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|225869409|ref|YP_002745357.1| Holliday junction resolvase [Streptococcus equi subsp.
zooepidemicus]
gi|259495714|sp|C0MGB3|RUVX_STRS7 RecName: Full=Putative Holliday junction resolvase
gi|225702685|emb|CAX00789.1| putative Holliday junction resolvase [Streptococcus equi subsp.
zooepidemicus]
Length = 139
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 10/138 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
I +D+G+K +G+AISDP A + K+ + + L + + F+I
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEII---KINEDKQDFGFDRLAELVKQYQVDRFVI 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN + GPRV +++A+ + I+ ++P + DERLTTV A+++LI+ ++SR KR
Sbjct: 60 GLPKNMNNTSGPRVEASKAY-GDRIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKR 118
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA LILQ LD
Sbjct: 119 KKVIDKLAAQLILQNYLD 136
>gi|254456227|ref|ZP_05069656.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083229|gb|EDZ60655.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter
sp. HTCC7211]
Length = 151
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 1/148 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
++ IEDL K + +DLG+KRIG++I D + A P + + + EL
Sbjct: 1 MITIEDLKKKQSETSRLIGLDLGSKRIGVSICDEKQSIATPFKTINKTNTNELINELKKI 60
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I +I ++G P+NM+G+ G S N ID+ + + WDERL+TV A +
Sbjct: 61 IEEYDIKGIVVGNPINMDGTLGRSSQSVNDVSDN-IDKAIDIDVCLWDERLSTVGAFNLS 119
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150
++V+ KR + +D AAA ILQ +D
Sbjct: 120 SQLDVNVSKREKNIDQNAAAFILQGAID 147
>gi|295109588|emb|CBL23541.1| conserved hypothetical protein TIGR00250 [Ruminococcus obeum
A2-162]
Length = 140
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 4/138 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+A+SDP A + RK K+ QT + I + ++G
Sbjct: 3 ILGLDYGSKTVGVAVSDPLGLTAQKVETIWRKQENKLRQTLARIEELIAEYEVEKIVLGF 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R F M+ ++ + + WDERLTTV A + LI+ V R+ R Q
Sbjct: 63 PKNMNNTVGERAEKALEF-GEMLKKRTGLEVIMWDERLTTVEADRTLIEAGVRRENRKQY 121
Query: 136 VDSIAAALILQEVLDRIS 153
+D IAA ILQ LD +S
Sbjct: 122 LDGIAAVFILQGYLDSLS 139
>gi|225871407|ref|YP_002747354.1| Holliday junction resolvase [Streptococcus equi subsp. equi 4047]
gi|254767526|sp|C0MAR3|RUVX_STRE4 RecName: Full=Putative Holliday junction resolvase
gi|225700811|emb|CAW95508.1| putative Holliday junction resolvase [Streptococcus equi subsp.
equi 4047]
Length = 139
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 6/136 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP F ++R + L + + F+IGL
Sbjct: 3 IMGLDVGSKTVGVAISDP-LGFTAQGLEIIRINEDKQDFGFDRLAELVKQYQVDRFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134
P NMN + GPRV +++A+ + I+ ++P + DERLTTV A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASKAY-GDKIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 121 VIDKLAAQLILQNYLD 136
>gi|289168746|ref|YP_003447015.1| holiday junction resolvase [Streptococcus mitis B6]
gi|288908313|emb|CBJ23155.1| holiday junction resolvase [Streptococcus mitis B6]
Length = 139
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGAKL-EELFSLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|269792642|ref|YP_003317546.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100277|gb|ACZ19264.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 142
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++DLG RIG+A+SDP R FA P L K L++ + ++ ++GLP+
Sbjct: 8 VMALDLGEVRIGVALSDPSRSFASPLEVL--KMEEGWPLKVKELVERNSVTLIVVGLPIR 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+GS GP V ++ + V V DER TT AQ+ L++ +V R+KR KVD
Sbjct: 66 TDGSSGPEVQRVMGWLEELKAVVQQVEIVTVDERFTTSIAQRFLLEGDVRREKRKGKVDK 125
Query: 139 IAAALILQEVLD 150
+AAAL+LQ+ L+
Sbjct: 126 VAAALMLQDYLN 137
>gi|322388593|ref|ZP_08062193.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
ATCC 700779]
gi|321140513|gb|EFX36018.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
ATCC 700779]
Length = 136
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
+D+G+K +G+AISDP A + + + + E L + T + F++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGEFGFERLKELVDTYKVERFVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +D
Sbjct: 62 MNNTSGPRVEASQAYGAKL-EELFGLPVEYQDERLTTVAAERMLIEQADISRNKRKKVID 120
Query: 138 SIAAALILQEVLDR 151
+AA LILQ LDR
Sbjct: 121 KLAAQLILQNYLDR 134
>gi|225375409|ref|ZP_03752630.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM
16841]
gi|225212745|gb|EEG95099.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM
16841]
Length = 145
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 4/139 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+A+SD A + R+ K+ Q+ + I N+ ++G
Sbjct: 3 ILGLDYGSKTVGVAVSDELLFTAQGLEIVRRQSPNKLRQSLARIEEIIKEYNVERIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN +EG R T+ F M++R+ + + WDERLTTVSA + +++ + R+ R +
Sbjct: 63 PKNMNNTEGERCEKTKEF-KEMLERRTGLNVILWDERLTTVSADKHMMESGIRREDRKKF 121
Query: 136 VDSIAAALILQEVLDRISF 154
VD IAA ILQ LD ++
Sbjct: 122 VDEIAAVFILQGYLDYLAM 140
>gi|160880429|ref|YP_001559397.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg]
gi|189046094|sp|A9KKS6|RUVX_CLOPH RecName: Full=Putative Holliday junction resolvase
gi|160429095|gb|ABX42658.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg]
Length = 150
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 4/138 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+ +G+AISD + A + RK K+ QT + I + ++G
Sbjct: 3 IMGLDYGSVTVGVAISDSLKLTAQGIEVIRRKSETKLRQTLARIEELIKEYEVEEIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R + F ++ R+ +P V WDERLTTV+A Q+L VS KK+++
Sbjct: 63 PKNMNNTIGERAEKSEEFAEHL-RRRTGLPVVLWDERLTTVAAHQVLNAGEVSLKKKMEV 121
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AA ILQ LD +S
Sbjct: 122 VDKLAAVFILQGYLDYLS 139
>gi|116333831|ref|YP_795358.1| Holliday junction resolvase-like protein [Lactobacillus brevis ATCC
367]
gi|122269482|sp|Q03R45|RUVX_LACBA RecName: Full=Putative Holliday junction resolvase
gi|116099178|gb|ABJ64327.1| RNase H-like ribonuclease [Lactobacillus brevis ATCC 367]
Length = 145
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
+ +D+G++ +G+A+SD G + + Q L+ + I + ++ F++GLP
Sbjct: 3 LMGLDVGSRTVGVAVSDALGWTAQGVEIIRINEDEEQFGLDRVGELIASHDVQGFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN S GPR +++ + +M+ + +P F DERLTTV A+++L++ + SR+KR Q
Sbjct: 63 KNMNNSLGPRAEASKRY-GDMLTARFNLPVDFEDERLTTVEAERMLVEQADTSRRKRKQV 121
Query: 136 VDSIAAALILQEVLDRISFLESSK 159
+D +AA LILQ LDR L K
Sbjct: 122 IDKLAAGLILQNYLDRHGKLTREK 145
>gi|184154999|ref|YP_001843339.1| endonuclease [Lactobacillus fermentum IFO 3956]
gi|226731625|sp|B2GB27|RUVX_LACF3 RecName: Full=Putative Holliday junction resolvase
gi|183226343|dbj|BAG26859.1| endonuclease [Lactobacillus fermentum IFO 3956]
Length = 145
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 83/133 (62%), Gaps = 4/133 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
+D+G+K +G+A SDP A + + ++ LE ++ + + +A F++GLP N
Sbjct: 5 GLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
MN +EGPRV + R + +++ + +P + DERLTTV A ++L+ + +VSR+K+ + +D
Sbjct: 65 MNNTEGPRVEAARHY-GELLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKKVID 123
Query: 138 SIAAALILQEVLD 150
+AA LILQ LD
Sbjct: 124 ELAATLILQNYLD 136
>gi|34580618|ref|ZP_00142098.1| hypothetical protein [Rickettsia sibirica 246]
gi|238651062|ref|YP_002916919.1| Holliday junction resolvase-like protein [Rickettsia peacockii str.
Rustic]
gi|259495713|sp|C4K2S0|RUVX_RICPU RecName: Full=Putative Holliday junction resolvase
gi|28262003|gb|EAA25507.1| unknown [Rickettsia sibirica 246]
gi|238625160|gb|ACR47866.1| Holliday junction resolvase-like protein [Rickettsia peacockii str.
Rustic]
Length = 154
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63
+++ + L PN P+ +ID G+K++G+A+S+ R A P + + KK+ T+L L+ I
Sbjct: 6 LQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSL--LNII 63
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
+ IIGLP++M+G+ + + F + + + +P DERLTT +A +L
Sbjct: 64 EKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELA-KSINLPIYLQDERLTTKAANNLLK 122
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
V RK R D++AA++IL+ VLD I
Sbjct: 123 SFGVKRKDRNNNDDAVAASMILETVLDSI 151
>gi|157964411|ref|YP_001499235.1| Holliday junction resolvase-like protein [Rickettsia massiliae
MTU5]
gi|157844187|gb|ABV84688.1| Putative endonuclease involved in recombination [Rickettsia
massiliae MTU5]
Length = 165
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 4/155 (2%)
Query: 1 MSILLIEDL---VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL 57
++I++I++L + L PN P+ +ID G+K++G+A+S+ R A P +
Sbjct: 9 ITIMIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINTKIVIT 68
Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
LL+ I + IIGLP+NM+G+ + + F + + + +P DERLTT +
Sbjct: 69 SLLNIIEKYKVCGVIIGLPINMSGAVTEQTNIVMQFAEEL-AKSINLPIYLQDERLTTKA 127
Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
A L V RK R D++AA++IL+ VLD I
Sbjct: 128 ANNFLKSFGVKRKDRNNNDDAVAASMILETVLDSI 162
>gi|307708049|ref|ZP_07644517.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
gi|322377241|ref|ZP_08051733.1| putative Holliday junction resolvase [Streptococcus sp. M334]
gi|307615834|gb|EFN95039.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
gi|321281954|gb|EFX58962.1| putative Holliday junction resolvase [Streptococcus sp. M334]
Length = 139
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|307265209|ref|ZP_07546768.1| Holliday junction resolvase YqgF [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306919831|gb|EFN50046.1| Holliday junction resolvase YqgF [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 139
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+AISD A + R + + I + I+GLP N
Sbjct: 3 IMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137
M+G+ GP+ FV ++ +P + WDERLTTV AQ++LI+ ++SR KR + +D
Sbjct: 63 MSGTLGPQGQKVVRFVEHL-KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEVID 121
Query: 138 SIAAALILQEVLD 150
+AA LILQ LD
Sbjct: 122 KLAAVLILQNYLD 134
>gi|301300898|ref|ZP_07207070.1| RNAse YqgF [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851497|gb|EFK79209.1| RNAse YqgF [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 147
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76
+ +D+G++ +G+A+SD G + + + L+ ++ + EN + F++GLP
Sbjct: 4 LMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV + +A+ ++ K +P F DERLTTV A+++L++ + SRKKR +
Sbjct: 64 KNMNNTSGPRVEAAKAY-GELLKEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKV 122
Query: 136 VDSIAAALILQEVLD 150
+D +AA+LILQ LD
Sbjct: 123 IDKLAASLILQNYLD 137
>gi|154482585|ref|ZP_02025033.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC
27560]
gi|149736610|gb|EDM52496.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC
27560]
Length = 142
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+A++DP A + R K+ +T + + NI ++G
Sbjct: 3 ILGLDFGSKTVGVAVTDPLGYTAQGVEIIRRDSPNKLRKTLARIEQLVEQYNIEKIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ ++G+EG RV T+ F M++R+ + VF DERLTTV A +I+ + + ++ R +
Sbjct: 63 PVMLSGTEGERVKKTKEF-GAMLERRTGLEIVFQDERLTTVEAYEIMDEAGIKKQDRYKY 121
Query: 136 VDSIAAALILQEVLDRIS 153
VD IAA +IL++ ++RI
Sbjct: 122 VDQIAATIILEDYINRIE 139
>gi|196233674|ref|ZP_03132515.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428]
gi|196222344|gb|EDY16873.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428]
Length = 140
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID G RIG+A+SD AHP + K+V + + +T++++ I+GLP NM+
Sbjct: 6 GIDHGDARIGVAVSDDLGMLAHPLETIHVKEVADPVARIATLVTSKDVGHIILGLPRNMD 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS GP RAF + WDERLT+V+AQ+ L + K + +D +A
Sbjct: 66 GSYGPAAEKVRAFAEKL-RAACGCEVKLWDERLTSVAAQRSLHEAGRKVKDSREVIDQVA 124
Query: 141 AALILQEVLDRISFL 155
A LILQ LD + L
Sbjct: 125 AQLILQGWLDSQALL 139
>gi|15902220|ref|NP_357770.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
R6]
gi|116515819|ref|YP_815700.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
D39]
gi|148983593|ref|ZP_01816912.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae
SP3-BS71]
gi|148987930|ref|ZP_01819393.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae
SP6-BS73]
gi|148992772|ref|ZP_01822415.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae
SP9-BS68]
gi|148996617|ref|ZP_01824335.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae
SP11-BS70]
gi|149001702|ref|ZP_01826675.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
pneumoniae SP14-BS69]
gi|149005945|ref|ZP_01829674.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae
SP18-BS74]
gi|149011064|ref|ZP_01832369.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae
SP19-BS75]
gi|168483832|ref|ZP_02708784.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gi|168490343|ref|ZP_02714542.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
gi|168492149|ref|ZP_02716292.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC0288-04]
gi|168576377|ref|ZP_02722260.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
gi|169834458|ref|YP_001693728.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
Hungary19A-6]
gi|182683176|ref|YP_001834923.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14]
gi|225853803|ref|YP_002735315.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
JJA]
gi|225855961|ref|YP_002737472.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
P1031]
gi|225858051|ref|YP_002739561.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
70585]
gi|225860238|ref|YP_002741747.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|237649736|ref|ZP_04523988.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
CCRI 1974]
gi|237821434|ref|ZP_04597279.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
CCRI 1974M2]
gi|298255974|ref|ZP_06979560.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
str. Canada MDR_19A]
gi|303255107|ref|ZP_07341183.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
BS455]
gi|303259248|ref|ZP_07345226.1| hypothetical protein CGSSp9vBS293_02607 [Streptococcus pneumoniae
SP-BS293]
gi|303263331|ref|ZP_07349254.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae
BS397]
gi|307066873|ref|YP_003875839.1| putative endonuclease [Streptococcus pneumoniae AP200]
gi|32130028|sp|Q8DRE2|RUVX_STRR6 RecName: Full=Putative Holliday junction resolvase
gi|122279414|sp|Q04MP8|RUVX_STRP2 RecName: Full=Putative Holliday junction resolvase
gi|226695306|sp|B1I8I5|RUVX_STRPI RecName: Full=Putative Holliday junction resolvase
gi|226695307|sp|B2IS28|RUVX_STRPS RecName: Full=Putative Holliday junction resolvase
gi|254767527|sp|C1CAK0|RUVX_STRP7 RecName: Full=Putative Holliday junction resolvase
gi|254767529|sp|C1CBZ4|RUVX_STRZJ RecName: Full=Putative Holliday junction resolvase
gi|254767530|sp|C1CI84|RUVX_STRZP RecName: Full=Putative Holliday junction resolvase
gi|254767531|sp|C1CP75|RUVX_STRZT RecName: Full=Putative Holliday junction resolvase
gi|15457719|gb|AAK98980.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076395|gb|ABJ54115.1| conserved hypothetical protein TIGR00250 [Streptococcus pneumoniae
D39]
gi|147757192|gb|EDK64231.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae
SP11-BS70]
gi|147760160|gb|EDK67149.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
pneumoniae SP14-BS69]
gi|147762301|gb|EDK69262.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae
SP18-BS74]
gi|147764700|gb|EDK71630.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae
SP19-BS75]
gi|147923740|gb|EDK74852.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae
SP3-BS71]
gi|147926394|gb|EDK77467.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae
SP6-BS73]
gi|147928498|gb|EDK79513.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae
SP9-BS68]
gi|168996960|gb|ACA37572.1| conserved hypothetical protein [Streptococcus pneumoniae
Hungary19A-6]
gi|172042909|gb|EDT50955.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gi|182628510|gb|ACB89458.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14]
gi|183571311|gb|EDT91839.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
gi|183573647|gb|EDT94175.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC0288-04]
gi|183577826|gb|EDT98354.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
gi|225721840|gb|ACO17694.1| conserved hypothetical protein [Streptococcus pneumoniae 70585]
gi|225722223|gb|ACO18076.1| conserved hypothetical protein [Streptococcus pneumoniae JJA]
gi|225725306|gb|ACO21158.1| conserved hypothetical protein [Streptococcus pneumoniae P1031]
gi|225727488|gb|ACO23339.1| conserved hypothetical protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|302597937|gb|EFL65007.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
BS455]
gi|302639666|gb|EFL70123.1| hypothetical protein CGSSpBS293_02607 [Streptococcus pneumoniae
SP-BS293]
gi|302647104|gb|EFL77328.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae
BS397]
gi|306408410|gb|ADM83837.1| predicted endonuclease [Streptococcus pneumoniae AP200]
Length = 139
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|227891105|ref|ZP_04008910.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
ATCC 11741]
gi|227866979|gb|EEJ74400.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
ATCC 11741]
Length = 147
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76
+ +D+G++ +G+A+SD G + + + L+ ++ + EN + F++GLP
Sbjct: 4 LMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV + +A+ ++ K +P F DERLTTV A+++L++ + SRKKR +
Sbjct: 64 KNMNNTSGPRVEAAKAY-GELLKEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKV 122
Query: 136 VDSIAAALILQEVLD 150
+D +AA+LILQ LD
Sbjct: 123 IDKLAASLILQNYLD 137
>gi|169824325|ref|YP_001691936.1| putative endonuclease involved in recombination [Finegoldia magna
ATCC 29328]
gi|297588302|ref|ZP_06946945.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
53516]
gi|167831130|dbj|BAG08046.1| putative endonuclease involved in recombination [Finegoldia magna
ATCC 29328]
gi|297573675|gb|EFH92396.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
53516]
Length = 137
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G + IG+AISDP A + RK + + I + ++ I+GLP NMN
Sbjct: 6 GLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINDIIKEKEVSKIIVGLPKNMN 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
+ GP+ + FV + + + + DERLTTVSA ++LI+ NVSRKKR +DS+A
Sbjct: 66 NTIGPQAKKVKTFVKEL-RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDVIDSVA 124
Query: 141 AALILQEVLD 150
A ILQ LD
Sbjct: 125 ATYILQTYLD 134
>gi|188586393|ref|YP_001917938.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|226731632|sp|B2A5J5|RUVX_NATTJ RecName: Full=Putative Holliday junction resolvase
gi|179351080|gb|ACB85350.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 141
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 76/133 (57%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I DLG IG+A+SD + A + + R+ + + ++ I ++ I+GLP N
Sbjct: 3 IMGFDLGEATIGVAVSDALQLTAQGKTVIKRQSLEKDIEQVTKLIEDYQVSKLIVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNGS G F+ ++ +++V +P DERLT+ A+Q L++ +VSRKKR Q +D
Sbjct: 63 MNGSLGQMADQIMDFIKSL-EQEVDIPIETVDERLTSRMAEQTLLEADVSRKKRKQVIDK 121
Query: 139 IAAALILQEVLDR 151
+AA ILQ LDR
Sbjct: 122 LAAVNILQTYLDR 134
>gi|166031235|ref|ZP_02234064.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
27755]
gi|166029082|gb|EDR47839.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
27755]
Length = 144
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G++ +G+A+SDP A + RK K+ +T + + + ++GL
Sbjct: 3 IMGLDYGSRTVGVAVSDPLGITAQAVETICRKDENKLRKTCARIEELVAEYEVEKIVLGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MN G R + F MI R+ + V WDERLTTVSA++ LI+ V R+ R +
Sbjct: 63 PKHMNNDIGDRAEKSMQF-GEMIGRRTGLEVVMWDERLTTVSAERTLIENKVRREDRKKY 121
Query: 136 VDSIAAALILQEVLD 150
+D IAA ILQ LD
Sbjct: 122 IDQIAAVFILQGYLD 136
>gi|20807699|ref|NP_622870.1| endonuclease [Thermoanaerobacter tengcongensis MB4]
gi|32130041|sp|Q8R5S9|RUVX_THETN RecName: Full=Putative Holliday junction resolvase
gi|20516249|gb|AAM24474.1| predicted endonuclease involved in recombination
[Thermoanaerobacter tengcongensis MB4]
Length = 139
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D+G K IG+AISD A + RK + + + ++ ++GLP N
Sbjct: 3 VLGLDVGDKTIGVAISDVSSTIAQGITTIRRKSFVEDVKAIEEIVKKYSVEKVVVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
MNGS GP+ F + R+V +P VFWDERLTT+ A++ LI+ +++SR KR + +
Sbjct: 63 MNGSIGPQGEKVIKFGEKL--REVLRIPVVFWDERLTTLQAERFLIEGVDMSRGKRKKVI 120
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 121 DKLAATIILQSYLD 134
>gi|167757700|ref|ZP_02429827.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704]
gi|167664582|gb|EDS08712.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704]
Length = 141
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+AISDP A + RK K+ +T + + I + ++GL
Sbjct: 3 IMGLDYGSKTVGVAISDPLGITAQAIETICRKDENKLRKTCARIETLIEEYKVERIVLGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MN G R + F M+ R+ + V WDERLTTV A++ LI+ V R+ R +
Sbjct: 63 PKHMNNDIGDRAERSLEF-GKMLSRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKKY 121
Query: 136 VDSIAAALILQEVLDRIS 153
+D IAA ILQ LD I
Sbjct: 122 IDKIAAVFILQGYLDSIC 139
>gi|291519256|emb|CBK74477.1| conserved hypothetical protein TIGR00250 [Butyrivibrio fibrisolvens
16/4]
Length = 142
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT---QTALELLSFITTENIAAFIIGL 75
I +D GTK +G+AISDP A + R++ + T + + + I+G
Sbjct: 4 ILGLDYGTKTVGVAISDPLLLTAQEFETITRERASALRHTLVRIKEICEEYQVEKIILGY 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+ SEG R T F +++++V +P DERLTTV A +IL + V++K R +
Sbjct: 64 PRNMDDSEGFRCEDTLEF-KKLLEKRVDIPIELVDERLTTVYADEILEESGVAKKDRKKV 122
Query: 136 VDSIAAALILQEVLD 150
+D IAAA+ILQ+ LD
Sbjct: 123 IDQIAAAIILQDYLD 137
>gi|189485524|ref|YP_001956465.1| putative Holliday junction resolvase RuvX [uncultured Termite group
1 bacterium phylotype Rs-D17]
gi|226695313|sp|B1H0H2|RUVX_UNCTG RecName: Full=Putative Holliday junction resolvase
gi|170287483|dbj|BAG14004.1| putative Holliday junction resolvase RuvX [uncultured Termite group
1 bacterium phylotype Rs-D17]
Length = 140
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID G KRIG+AI+D R A P + + + AL++L +++ ++GLPLN
Sbjct: 4 IMGIDYGLKRIGIAITDFLRITASPFDTVKNVSLKKNALKILEIAKNRDVSIIVLGLPLN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
MNG+EG + R F+ I + DERLTTV A+++LI + ++SR+KR D
Sbjct: 64 MNGTEGGMAETVRKFIEK-IKFLSDIEVTTVDERLTTVQAERMLIEEADISREKRKGIKD 122
Query: 138 SIAAALILQEVLD 150
+ AALILQ LD
Sbjct: 123 KVVAALILQTYLD 135
>gi|322392530|ref|ZP_08065990.1| crossover junction endodeoxyribonuclease [Streptococcus peroris
ATCC 700780]
gi|321144522|gb|EFX39923.1| crossover junction endodeoxyribonuclease [Streptococcus peroris
ATCC 700780]
Length = 136
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
+D+G+K +G+AISDP A + + + Q + L + + + F++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRLKELVESYKVEHFVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ +VSR KR + +D
Sbjct: 62 MNNTSGPRVEASQAYGAKL-EELFGLPVEYQDERLTTVAAERMLIEQADVSRNKRKKVID 120
Query: 138 SIAAALILQEVLDR 151
+AA LILQ LDR
Sbjct: 121 KLAAQLILQNYLDR 134
>gi|260663394|ref|ZP_05864285.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
gi|260552246|gb|EEX25298.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
Length = 145
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 83/134 (61%), Gaps = 4/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
+D+G+K +G+A SDP A + + ++ LE ++ + + +A ++GLP N
Sbjct: 5 GLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGIVLGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
MN +EGPRV + R + +++ + +P + DERLTTV A ++L+ + +VSR+K+ + +D
Sbjct: 65 MNNTEGPRVEAARHY-GELLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKKVID 123
Query: 138 SIAAALILQEVLDR 151
+AA LILQ LDR
Sbjct: 124 ELAATLILQNYLDR 137
>gi|301793470|emb|CBW35843.1| putative Holliday junction resolvase [Streptococcus pneumoniae
INV104]
Length = 136
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 83/134 (61%), Gaps = 4/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
+D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +D
Sbjct: 62 MNNTSGPRVEASQAYGAKL-EEFFGLPLDYQDERLTTVAAERMLIEQADISRNKRKKVID 120
Query: 138 SIAAALILQEVLDR 151
+AA LILQ LDR
Sbjct: 121 KLAAQLILQNYLDR 134
>gi|299535708|ref|ZP_07049029.1| putative Holliday junction resolvase [Lysinibacillus fusiformis
ZC1]
gi|298728908|gb|EFI69462.1| putative Holliday junction resolvase [Lysinibacillus fusiformis
ZC1]
Length = 138
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+A+SD G + + + ++ ++ + E I F++G P
Sbjct: 3 IMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYTITEFVVGFP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSRKKR Q +
Sbjct: 63 KNMNNTVGPRGEASENY-KKLLEEHFSLPVKLWDERLTTMAAERMLIEADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVMILQGYLD 135
>gi|297616549|ref|YP_003701708.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM
12680]
gi|297144386|gb|ADI01143.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM
12680]
Length = 144
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D G KRIG+AISD A P + R + + T + ++GLPLN
Sbjct: 3 ILGLDPGEKRIGVAISDALGITAQPLTSIQRSSLKADIEAIRQICETYQVEHIVLGLPLN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+NGS G + + + + + + WDERL+T + Q +L++ + SR+KR + VD
Sbjct: 63 LNGSRGEKAAQSAKLAQELKEH-LSLEVTLWDERLSTKAVQGVLLEADTSRRKRKRVVDK 121
Query: 139 IAAALILQEVLDRIS 153
+AAA ILQ LDRI
Sbjct: 122 LAAAYILQGYLDRIG 136
>gi|291458552|ref|ZP_06597942.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon
078 str. F0262]
gi|291419085|gb|EFE92804.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon
078 str. F0262]
Length = 254
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G K IG+A++DP A P + R+ K+ ++ E+ + ++ ++ +IGL
Sbjct: 3 IMGLDYGAKTIGVAVTDPSGLIAQPLRTIFREREGKLRRSLQEIAALVSELSVERIVIGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ +EG R R F ++ ++V VP + DERLTT++A++IL + V R+++ +
Sbjct: 63 PLNMDETEGERAEKAREFAA-LLAKRVLVPIEWVDERLTTIAAREILDESGVPREEQKRM 121
Query: 136 VDSIAAALILQ 146
+D +AA LIL+
Sbjct: 122 IDQVAAQLILE 132
>gi|253580719|ref|ZP_04857983.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848090|gb|EES76056.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 140
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFIIGL 75
+ +D G+K +G+AISDP A + RK+ + QT + ++ ++ ++G
Sbjct: 3 VLGLDYGSKTVGVAISDPLGITAQGVETIWRKQENHLRQTLARIEELVSEYHVEKIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R + F M++R+ + + WDERLTTV A + L++ +V R+ R Q
Sbjct: 63 PKNMNNTIGERAQKSLEF-KEMLERRTGLEVIMWDERLTTVEANRTLMEASVRRENRKQY 121
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ LD +S
Sbjct: 122 LDQLAAVFILQGYLDSLS 139
>gi|307711065|ref|ZP_07647487.1| conserved hypothetical protein [Streptococcus mitis SK321]
gi|307617027|gb|EFN96205.1| conserved hypothetical protein [Streptococcus mitis SK321]
Length = 136
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 84/137 (61%), Gaps = 10/137 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
+D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134
MN + GPRV +++A+ + + D +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 62 MNNTSGPRVEASQAYGAKLEELFD----LPVDYQDERLTTVAAERMLIEQADISRNKRKK 117
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 118 VIDKLAAQLILQNYLDR 134
>gi|195978958|ref|YP_002124202.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195975663|gb|ACG63189.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 136
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 81/136 (59%), Gaps = 10/136 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
+D+G+K +G+AISDP A + K+ + + L + + F+IGL
Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEII---KINEDKQDFGFDRLAELVKQYQVDRFVIGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134
P NMN + GPRV +++A+ + I+ ++P + DERLTTV A+++LI+ ++SR KR +
Sbjct: 59 PKNMNNTSGPRVEASKAY-GDRIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKK 117
Query: 135 KVDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 118 VIDKLAAQLILQNYLD 133
>gi|260438499|ref|ZP_05792315.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM
2876]
gi|292809088|gb|EFF68293.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM
2876]
Length = 144
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G++ +G+A+ DP A + RK K+ QT + N ++GL
Sbjct: 3 IIGLDFGSRTVGVAVCDPLMITAQGVEIIRRKEENKLRQTYARIEELCAEYNAERIVLGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G RV T F ++R+ + V WDERLTTV+A +++ + R+ R +
Sbjct: 63 PKNMNNTSGDRVDKTMDF-KAALERRTGLEVVMWDERLTTVAADNAMMEAGIRRENRKEY 121
Query: 136 VDSIAAALILQEVLDRIS 153
VD IAA LILQ LD ++
Sbjct: 122 VDMIAAQLILQGYLDSLA 139
>gi|172058081|ref|YP_001814541.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15]
gi|171990602|gb|ACB61524.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15]
Length = 140
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 17/140 (12%)
Query: 21 SIDLGTKRIGLAISD---------PGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+D+G+K IG+A+SD ++ P + K+ L + I +
Sbjct: 6 GLDVGSKTIGVAVSDLMGWTAQGVETIKWTEPEYPVAFKR-------LEAIIKEYGVEII 58
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+IG P NMNGS GPR ++ AF I+ + + V DERLTT+ A+++LID +VSRKK
Sbjct: 59 VIGHPKNMNGSIGPRAEASEAFARE-IETQTGLSTVLVDERLTTMQAERMLIDADVSRKK 117
Query: 132 RIQKVDSIAAALILQEVLDR 151
R Q +D +AA +ILQ LDR
Sbjct: 118 RKQVIDKMAAVMILQSYLDR 137
>gi|260886204|ref|ZP_05897467.1| putative holliday junction resolvase [Selenomonas sputigena ATCC
35185]
gi|330838890|ref|YP_004413470.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185]
gi|260864067|gb|EEX78567.1| putative holliday junction resolvase [Selenomonas sputigena ATCC
35185]
gi|329746654|gb|AEC00011.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185]
Length = 149
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 72/136 (52%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G + IG+A SD A + RK + L + FI+GLP N
Sbjct: 5 VLALDVGDRTIGVAASDGLGLTAQGVETIRRKSWDKDFARLKELMELYETDTFIVGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG++G R R F + + VFWDERL+TV+A++ LI +VSR KR + +D
Sbjct: 65 MNGTQGERCDVVRDFAQRLQKKFKGSQVVFWDERLSTVAAERSLIAADVSRAKRRKVIDK 124
Query: 139 IAAALILQEVLDRISF 154
+AA ILQ LD +
Sbjct: 125 MAAVFILQGYLDNLGM 140
>gi|325107974|ref|YP_004269042.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305]
gi|324968242|gb|ADY59020.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305]
Length = 155
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GTKR+GLAIS P + A P + R + Q + ++ + ++GLP++M+
Sbjct: 13 GIDFGTKRVGLAISTPDQSIASPLEIIHRSQPAQDSKKICKICNEFRVKGLVVGLPVHMS 72
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEG + R F + +P ++WDER T+ A L +S+ KR + +D +A
Sbjct: 73 GSEGGKAKEARVF-GDWCGEITQLPVIYWDERFTSALADNHLRQSTMSQAKRKKHLDKLA 131
Query: 141 AALILQEVLD 150
A ++LQ L+
Sbjct: 132 AQVMLQSFLE 141
>gi|307704051|ref|ZP_07640982.1| Holliday junction resolvase, putative [Streptococcus mitis SK597]
gi|307709897|ref|ZP_07646344.1| Holliday junction resolvase, putative [Streptococcus mitis SK564]
gi|307619268|gb|EFN98397.1| Holliday junction resolvase, putative [Streptococcus mitis SK564]
gi|307622402|gb|EFO01408.1| Holliday junction resolvase, putative [Streptococcus mitis SK597]
Length = 136
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 83/134 (61%), Gaps = 4/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
+D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +D
Sbjct: 62 MNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVID 120
Query: 138 SIAAALILQEVLDR 151
+AA LILQ LDR
Sbjct: 121 KLAAQLILQNYLDR 134
>gi|25012082|ref|NP_736477.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
NEM316]
gi|54039588|sp|P67493|RUVX_STRA5 RecName: Full=Putative Holliday junction resolvase
gi|54042292|sp|P67492|RUVX_STRA3 RecName: Full=Putative Holliday junction resolvase
gi|118597222|sp|Q3JYN4|RUVX_STRA1 RecName: Full=Putative Holliday junction resolvase
gi|24413626|emb|CAD47703.1| Unknown [Streptococcus agalactiae NEM316]
Length = 139
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 84/137 (61%), Gaps = 4/137 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP A + + ++ + L+ + E + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + I +P + DERLTTV A+++L++ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAY-GDKITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKV 121
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 122 IDKLAAQLILQNYLDRM 138
>gi|332981265|ref|YP_004462706.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON]
gi|332698943|gb|AEE95884.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON]
Length = 144
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G IG+AISD A RK+ ++ + +IGLP N
Sbjct: 3 ILGLDVGDNTIGIAISDELGWTAQGLETWRRKQPEADMQHIVDICQKSGVQCIVIGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
MNGS GP+ AF + D + V WDERL+TV+AQ+ LI+ +VSR KR + +D
Sbjct: 63 MNGSIGPQGKKVIAFKQRLADYMADDIDIVLWDERLSTVAAQRSLIEADVSRAKRKKVID 122
Query: 138 SIAAALILQEVLD 150
+AA ILQ LD
Sbjct: 123 KMAAVYILQGYLD 135
>gi|126653902|ref|ZP_01725749.1| Holliday junction resolvase-like protein [Bacillus sp. B14905]
gi|126589627|gb|EAZ83766.1| Holliday junction resolvase-like protein [Bacillus sp. B14905]
Length = 138
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+A+SD G + + + ++ ++ + E I F++G P
Sbjct: 3 IMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYAITEFVVGFP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSRKKR Q +
Sbjct: 63 KNMNNTVGPRGEASENY-KTLLEETFSLPVKLWDERLTTMAAERMLIEADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVMILQGYLD 135
>gi|331091336|ref|ZP_08340176.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA]
gi|330404497|gb|EGG84041.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA]
Length = 142
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+AISD A + RK K+ +T + + I + ++G
Sbjct: 3 IMGLDYGSKTVGVAISDALCLTAQGIETIQRKEENKLRKTLARIETLIKEYEVDKIVLGF 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MN G R + AF +M++R+ + + WDERLTTV A++ LI+ NV R++R +
Sbjct: 63 PKHMNNDIGDRAEKSLAF-KDMLERRTGLEVIMWDERLTTVEAERTLIESNVRREERKKY 121
Query: 136 VDSIAAALILQEVLDRI 152
VD IAA ILQ LD +
Sbjct: 122 VDKIAAIFILQGYLDSV 138
>gi|256847958|ref|ZP_05553402.1| Holliday junction resolvase YqgF [Lactobacillus coleohominis
101-4-CHN]
gi|256715018|gb|EEU29995.1| Holliday junction resolvase YqgF [Lactobacillus coleohominis
101-4-CHN]
Length = 146
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 79/134 (58%), Gaps = 3/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGLPLN 78
+D+G+K +G+A SDP A + + + + + +A F++GLP N
Sbjct: 5 GLDVGSKTVGVAESDPLGWTAQAVEIIPIDEENEIFGIDRIAELVQARQVAGFVLGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
MN +EGPRV ++R + + R +P F DERLTTV A ++L+ + +VSR+K+ + +D
Sbjct: 65 MNNTEGPRVEASRHYGELLRQRFPKLPIDFQDERLTTVQAHRMLVEEADVSRRKQKKVID 124
Query: 138 SIAAALILQEVLDR 151
+AA+LILQ LDR
Sbjct: 125 ELAASLILQNYLDR 138
>gi|229019608|ref|ZP_04176421.1| Holliday junction resolvase [Bacillus cereus AH1273]
gi|229025846|ref|ZP_04182244.1| Holliday junction resolvase [Bacillus cereus AH1272]
gi|228735457|gb|EEL86054.1| Holliday junction resolvase [Bacillus cereus AH1272]
gi|228741688|gb|EEL91875.1| Holliday junction resolvase [Bacillus cereus AH1273]
Length = 137
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 79/134 (58%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+GTK +G+A+SD G + ++ + +S + + ++GLP
Sbjct: 3 ILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYGVDKIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q +
Sbjct: 63 KNMNGTIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVVILQGFLD 135
>gi|15892378|ref|NP_360092.1| Holliday junction resolvase-like protein [Rickettsia conorii str.
Malish 7]
gi|32130054|sp|Q92IG5|RUVX_RICCN RecName: Full=Putative Holliday junction resolvase
gi|15619527|gb|AAL02993.1| unknown [Rickettsia conorii str. Malish 7]
Length = 154
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 5/149 (3%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63
+++ + L PN P+ +ID G K++G+A+S+ R A P + + KK+ T+L L+ I
Sbjct: 6 LQEFYRLLIPNVPLIAIDYGNKKLGIALSNQERSIAMPLNTITEINKKIVITSL--LNII 63
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
+ IIGLP++M+G+ + + F + + + +P DERLTT +A +L
Sbjct: 64 EKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEEL-AKSINLPIYLQDERLTTKAANNLLK 122
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
V RK R D++AA++IL+ VLD I
Sbjct: 123 SFGVKRKDRNNNDDAVAASMILETVLDSI 151
>gi|290581344|ref|YP_003485736.1| hypothetical protein SmuNN2025_1818 [Streptococcus mutans NN2025]
gi|254998243|dbj|BAH88844.1| hypothetical protein [Streptococcus mutans NN2025]
Length = 139
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 10/140 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+G+K +G+A+SDP A + + + + E L+ + + F++GLP
Sbjct: 3 IIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFERLADLVKDYKVEKFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
NMN + GPRV +++A+ + + D +P + DERLTTV A+++L++ +VSR KR
Sbjct: 63 KNMNNTSGPRVEASQAYGKKIKELFD----LPVEYQDERLTTVQAERMLVEQADVSRGKR 118
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138
>gi|94967587|ref|YP_589635.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis
Ellin345]
gi|124107438|sp|Q1IU89|RUVX_ACIBL RecName: Full=Putative Holliday junction resolvase
gi|94549637|gb|ABF39561.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis
Ellin345]
Length = 153
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D GT+RIGLA+SDP A L+RK L S I I ++GLPL
Sbjct: 11 ILALDFGTRRIGLAVSDPLGITAQGLQTLLRKNKRTDLAALRSVIEQNEIREIVVGLPLR 70
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G++ R F ++++ +P WDER T+V A ++L + +S KKR + VD
Sbjct: 71 LSGADSSSTEKAREFAA-WLEKEFALPVHMWDERFTSVEANRVLRESEMSIKKRGEAVDR 129
Query: 139 IAAALILQEVLDR 151
++A LILQ L+R
Sbjct: 130 LSAVLILQAFLER 142
>gi|111658812|ref|ZP_01409443.1| hypothetical protein SpneT_02000110 [Streptococcus pneumoniae
TIGR4]
gi|149017883|ref|ZP_01834342.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae
SP23-BS72]
gi|183603171|ref|ZP_02710544.2| conserved hypothetical protein [Streptococcus pneumoniae
CDC1087-00]
gi|183603568|ref|ZP_02718032.2| conserved hypothetical protein [Streptococcus pneumoniae
CDC3059-06]
gi|221231101|ref|YP_002510253.1| Holliday junction resolvase [Streptococcus pneumoniae ATCC 700669]
gi|298230981|ref|ZP_06964662.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
str. Canada MDR_19F]
gi|298502010|ref|YP_003723950.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
TCH8431/19A]
gi|303265496|ref|ZP_07351396.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae
BS457]
gi|303267946|ref|ZP_07353748.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae
BS458]
gi|307126416|ref|YP_003878447.1| hypothetical protein SP670_0270 [Streptococcus pneumoniae 670-6B]
gi|147931447|gb|EDK82425.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae
SP23-BS72]
gi|183570834|gb|EDT91362.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1087-00]
gi|183576182|gb|EDT96710.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC3059-06]
gi|220673561|emb|CAR68047.1| putative Holliday junction resolvase [Streptococcus pneumoniae ATCC
700669]
gi|298237605|gb|ADI68736.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
TCH8431/19A]
gi|301799346|emb|CBW31881.1| putative Holliday junction resolvase [Streptococcus pneumoniae
OXC141]
gi|301801141|emb|CBW33814.1| putative Holliday junction resolvase [Streptococcus pneumoniae
INV200]
gi|302642642|gb|EFL72987.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae
BS458]
gi|302644936|gb|EFL75183.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae
BS457]
gi|306483478|gb|ADM90347.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
gi|327390615|gb|EGE88955.1| hypothetical protein SPAR5_0192 [Streptococcus pneumoniae GA04375]
gi|332075862|gb|EGI86329.1| uncharacterized family protein [Streptococcus pneumoniae GA17570]
gi|332076642|gb|EGI87104.1| hypothetical protein SPAR148_0175 [Streptococcus pneumoniae
GA17545]
gi|332077498|gb|EGI87959.1| hypothetical protein SPAR68_0240 [Streptococcus pneumoniae GA41301]
gi|332202111|gb|EGJ16180.1| hypothetical protein SPAR69_0222 [Streptococcus pneumoniae GA41317]
gi|332203361|gb|EGJ17428.1| hypothetical protein SPAR93_0231 [Streptococcus pneumoniae GA47368]
gi|332204204|gb|EGJ18269.1| hypothetical protein SPAR120_0169 [Streptococcus pneumoniae
GA47901]
Length = 136
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 83/134 (61%), Gaps = 4/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
+D+G+K +G+AISDP A + + ++ Q + + + T + F++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +D
Sbjct: 62 MNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVID 120
Query: 138 SIAAALILQEVLDR 151
+AA LILQ LDR
Sbjct: 121 KLAAQLILQNYLDR 134
>gi|152976801|ref|YP_001376318.1| Holliday junction resolvase-like protein [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|189046085|sp|A7GT65|RUVX_BACCN RecName: Full=Putative Holliday junction resolvase
gi|152025553|gb|ABS23323.1| Holliday junction resolvase YqgF [Bacillus cytotoxicus NVH 391-98]
Length = 137
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 11/138 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF------ITTENIAAFI 72
I +D+GTK +G+AISD L K+ + E+ F + N+ +
Sbjct: 3 ILGLDVGTKTVGVAISDE---MGWTAQGLETIKINEER-EIFGFDRVSELVKQYNVDKIV 58
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP NMNG+ GPR + + + ++ + + + + WDERL+T++A+++LI +VSRKKR
Sbjct: 59 VGLPKNMNGTIGPRGEACQRYAESLREL-LQLEVILWDERLSTMAAERLLISADVSRKKR 117
Query: 133 IQKVDSIAAALILQEVLD 150
Q VD +AA +ILQ LD
Sbjct: 118 KQVVDKMAAVVILQGYLD 135
>gi|212638590|ref|YP_002315110.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1]
gi|212560070|gb|ACJ33125.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1]
Length = 145
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLP 76
I +D GTK +G+A+SD G + ++ + + L I + ++G P
Sbjct: 8 ILGLDFGTKTLGVAVSDELGWTAQGIETIRIDEEHGEYGFDRLRQLIEQYAVEEIVVGFP 67
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR +T+ F + + +P V WDERL+T++A+++LI +VSRKKR + +
Sbjct: 68 KNMNGTIGPRGEATQRFAEQ-VKQTFSLPVVLWDERLSTMAAERMLIAADVSRKKRKKVI 126
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 127 DKMAAVMILQSYLD 140
>gi|225568728|ref|ZP_03777753.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM
15053]
gi|225162227|gb|EEG74846.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM
15053]
Length = 145
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G K +G+A+SDP A + RK K+ QT + I + ++GL
Sbjct: 5 IMGLDYGEKTVGVAVSDPLGLTAQGIETIFRKEENKLRQTCARIEELIREYEVERIVLGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MN G R + F M+ R+ + V WDERLTTV A++ LI+ V R+ R +
Sbjct: 65 PKHMNNDIGDRAEQSLEF-GEMLKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKKY 123
Query: 136 VDSIAAALILQEVLDRI 152
+D IAA ILQ LD I
Sbjct: 124 IDKIAAVFILQGYLDSI 140
>gi|164688537|ref|ZP_02212565.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM
16795]
gi|164602950|gb|EDQ96415.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM
16795]
Length = 141
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+A+SD A + R+ + EL + I + + GLP N
Sbjct: 6 IMGLDIGDKTIGVAVSDIMGITAQGVKTIRRESKKKDIEELKNIIKERQVNKIVSGLPKN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP+ +I + + FWDERLTTV+A++ LI+ +VSRKKR + +D
Sbjct: 66 MNGTLGPQGEKVLKLCE-LIKEETGLEIDFWDERLTTVAAERSLIEGDVSRKKRKKVIDM 124
Query: 139 IAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 125 LAAVIILQGYLD 136
>gi|325680097|ref|ZP_08159663.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8]
gi|324108172|gb|EGC02422.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8]
Length = 140
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G R G+AISD A P + + A ++ ++GLP+N
Sbjct: 3 ILAVDYGDARTGIAISDNSEFLASPVCTITEYHADRLAQKVADIAKERGAGEIVVGLPIN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG++G R AF M+ V V WDER TTV+A Q L + NV KKR VD+
Sbjct: 63 MNGTKGERAEKCEAFAE-MLRGLVDVEVKMWDERSTTVTAHQYLNETNVRGKKRKAVVDT 121
Query: 139 IAAALILQEVL 149
+AA +IL+ L
Sbjct: 122 VAATIILESYL 132
>gi|311114976|ref|YP_003986197.1| putative Holliday junction resolvase [Gardnerella vaginalis ATCC
14019]
gi|310946470|gb|ADP39174.1| possible Holliday junction resolvase [Gardnerella vaginalis ATCC
14019]
Length = 166
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 13/143 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
IDLG R+G A+SDP FAHP + + A+E +L+ I +++ +IGLPL +
Sbjct: 15 GIDLGDARVGTALSDPELTFAHPAGNVQSYGDSFNAIEDVLNIIEDNSVSRVVIGLPLQL 74
Query: 80 NGSEGPRVHSTRAFVHNMIDRKV-----------YVPFVFW-DERLTTVSAQQILIDMNV 127
+G+EG R + N++ R ++P V W DERLTTV+A + L+D +
Sbjct: 75 DGTEGKSAKKARRWGTNLVKRMKSLFDYGDWSLDFIPEVVWKDERLTTVTAHKQLLDADF 134
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
S +K VD +A LILQ +D
Sbjct: 135 STRKHRPMVDQQSAVLILQSAID 157
>gi|290968330|ref|ZP_06559871.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L]
gi|290781605|gb|EFD94192.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L]
Length = 143
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 71/132 (53%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G+K IG+A SD A + RK L + T + ++G P +
Sbjct: 5 ILGLDIGSKTIGVACSDALGITAQGITTIQRKTAQDDWQRLQALATERRVTRMVVGRPRH 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG + V AF+ + + + FV+WDERLTT+ A+Q+L+ V R+KR Q VD
Sbjct: 65 MNGEDSENVKQIEAFITYLKRQMPAMEFVYWDERLTTMMARQVLMAGGVRREKRKQFVDK 124
Query: 139 IAAALILQEVLD 150
+AA LILQ LD
Sbjct: 125 MAAILILQNYLD 136
>gi|331002893|ref|ZP_08326406.1| hypothetical protein HMPREF0491_01268 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413186|gb|EGG92560.1| hypothetical protein HMPREF0491_01268 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 143
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFI 72
+ I +D G+K IG+AISD A P + R K+ ++ + + ++I +
Sbjct: 2 KERIMGLDYGSKTIGVAISDALGLTAQPLETIERSGENKLRRSLARIAEIVREKDIKKIV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP+NM+G G R T FV + R V +P V DERLTTV A +IL + V ++ R
Sbjct: 62 VGLPINMDGRSGERAALTLEFVEKLKLR-VDIPIVMQDERLTTVEADEILDESGVKKQDR 120
Query: 133 IQKVDSIAAALILQEVLDR 151
Q +D IAA +IL+E +++
Sbjct: 121 KQFIDQIAAGIILKEYMEK 139
>gi|67458927|ref|YP_246551.1| Holliday junction resolvase-like protein [Rickettsia felis
URRWXCal2]
gi|75536635|sp|Q4UM37|RUVX_RICFE RecName: Full=Putative Holliday junction resolvase
gi|67004460|gb|AAY61386.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2]
Length = 154
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAA 70
L PN P+ +ID G+K++G+A+S+ R A P ++ KK+ T+L LS I +
Sbjct: 13 LIPNAPLIAIDYGSKKLGIALSNQERNIAMPLNTIIEINKKIVITSL--LSIIEKYKVCG 70
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
+IGLP++M+G+ + + F + + + +P DERLTT +A L V RK
Sbjct: 71 VVIGLPIDMSGAVTEQTNIVMKFAEELA-KSINLPIYLQDERLTTKAANNFLKSFGVKRK 129
Query: 131 KRIQKVDSIAAALILQEVLDRISFL 155
R D++AA++IL+ VLD + L
Sbjct: 130 DRNNNDDAVAASMILETVLDSMKKL 154
>gi|270291980|ref|ZP_06198195.1| putative Holliday junction resolvase [Streptococcus sp. M143]
gi|270279508|gb|EFA25350.1| putative Holliday junction resolvase [Streptococcus sp. M143]
Length = 139
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
I +D+G+K +G+AISDP A + + + Q + + + + + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|148543770|ref|YP_001271140.1| Holliday junction resolvase-like protein [Lactobacillus reuteri DSM
20016]
gi|184153176|ref|YP_001841517.1| hypothetical protein LAR_0521 [Lactobacillus reuteri JCM 1112]
gi|194468335|ref|ZP_03074321.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23]
gi|227363250|ref|ZP_03847382.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM2-3]
gi|227544202|ref|ZP_03974251.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
CF48-3A]
gi|300908197|ref|ZP_07125663.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
SD2112]
gi|325682142|ref|ZP_08161660.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM4-1A]
gi|167012733|sp|A5VIX9|RUVX_LACRD RecName: Full=Putative Holliday junction resolvase
gi|226731626|sp|B2G6F5|RUVX_LACRJ RecName: Full=Putative Holliday junction resolvase
gi|148530804|gb|ABQ82803.1| Holliday junction resolvase YqgF [Lactobacillus reuteri DSM 20016]
gi|154705538|gb|ABS84195.1| holliday junction resolvase-like protein [Lactobacillus reuteri]
gi|183224520|dbj|BAG25037.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|194453188|gb|EDX42086.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23]
gi|227071706|gb|EEI09997.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM2-3]
gi|227185838|gb|EEI65909.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
CF48-3A]
gi|300894624|gb|EFK87980.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
SD2112]
gi|324978786|gb|EGC15735.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM4-1A]
Length = 147
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGLP 76
+ +D+G+K +G+++SDP A + + + + + E +A F+IGLP
Sbjct: 3 LMGLDVGSKTVGISVSDPLGWTAQAVEIIPIDEENEIFGIDRVAELVKKEQVAGFVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
NMN +EGPRV +++ + + R +P F DERLTTV A ++L+ + ++SR K+ +
Sbjct: 63 KNMNNTEGPRVEASQHYGKLLQQRFPDIPIDFQDERLTTVEAHRMLVEEADISRAKQKKV 122
Query: 136 VDSIAAALILQEVLDR 151
+D +AA ILQ LDR
Sbjct: 123 IDEVAATFILQSYLDR 138
>gi|308235923|ref|ZP_07666660.1| putative Holliday junction resolvase [Gardnerella vaginalis ATCC
14018]
Length = 156
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 13/143 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
IDLG R+G A+SDP FAHP + + A+E +L+ I +++ +IGLPL +
Sbjct: 5 GIDLGDARVGTALSDPELTFAHPAGNVQSYGDSFNAIEDVLNIIEDNSVSRVVIGLPLQL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKV-----------YVPFVFW-DERLTTVSAQQILIDMNV 127
+G+EG R + N++ R ++P V W DERLTTV+A + L+D +
Sbjct: 65 DGTEGKSAKKARRWGTNLVKRMKSLFDYGDWSLDFIPEVVWKDERLTTVTAHKQLLDADF 124
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
S +K VD +A LILQ +D
Sbjct: 125 STRKHRPMVDQQSAVLILQSAID 147
>gi|322375055|ref|ZP_08049569.1| putative Holliday junction resolvase [Streptococcus sp. C300]
gi|321280555|gb|EFX57594.1| putative Holliday junction resolvase [Streptococcus sp. C300]
Length = 139
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
I +D+G+K +G+AISDP A + + + Q + + + + + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIHINEDQGQFGFDRIKELVDSYKVERFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|22538225|ref|NP_689076.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
2603V/R]
gi|76788469|ref|YP_330619.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
A909]
gi|76799707|ref|ZP_00781806.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
18RS21]
gi|77406617|ref|ZP_00783663.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
H36B]
gi|77410840|ref|ZP_00787197.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
CJB111]
gi|77412943|ref|ZP_00789146.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
515]
gi|22535137|gb|AAN00949.1|AE014286_12 conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
2603V/R]
gi|76563526|gb|ABA46110.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
A909]
gi|76584940|gb|EAO61599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
18RS21]
gi|77160955|gb|EAO72063.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
515]
gi|77163058|gb|EAO74012.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
CJB111]
gi|77174776|gb|EAO77599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
H36B]
gi|319745985|gb|EFV98267.1| crossover junction endodeoxyribonuclease [Streptococcus agalactiae
ATCC 13813]
Length = 136
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+AISDP A + + ++ + L+ + E + F++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN + GPRV +++A+ + I +P + DERLTTV A+++L++ ++SR KR + +D
Sbjct: 62 MNNTSGPRVEASQAY-GDKITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVID 120
Query: 138 SIAAALILQEVLDRI 152
+AA LILQ LDR+
Sbjct: 121 KLAAQLILQNYLDRM 135
>gi|302671971|ref|YP_003831931.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus
B316]
gi|302396444|gb|ADL35349.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus
B316]
Length = 145
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+AISD A R + RK K+ +T + I + ++GL
Sbjct: 3 IMGLDYGSKTVGVAISDELLLTAQGREIIRRKEENKLRRTLARIEELIVEYGVTKIVLGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ + R F + I+R+ +P V WDERLTTV A +I+ + + + R +
Sbjct: 63 PLNMDQTPSERSQLCLEF-KDKIERRTGIPVVMWDERLTTVEADEIMDEAGIRGRDRKEY 121
Query: 136 VDSIAAALILQEVLD 150
VD IAA +ILQ+ LD
Sbjct: 122 VDMIAAQIILQDYLD 136
>gi|238926881|ref|ZP_04658641.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
flueggei ATCC 43531]
gi|238885413|gb|EEQ49051.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
flueggei ATCC 43531]
Length = 143
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+DLG IG+A+SD A + R + L + + A + GLP +MN
Sbjct: 6 SLDLGDATIGIAVSDLLGLTAQGVETVRRTNIEADLAHLGQLMQEYEVDALVAGLPKHMN 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG R RAF+ + + +WDERL+TV+A + LI +VSRKKR + +D +A
Sbjct: 66 GDEGERCSIVRAFMAEVEEHFPGTEVHYWDERLSTVAASRALIAGDVSRKKRRKVIDKMA 125
Query: 141 AALILQEVLDR 151
A ILQ LDR
Sbjct: 126 AVYILQGFLDR 136
>gi|229117883|ref|ZP_04247245.1| Holliday junction resolvase [Bacillus cereus Rock1-3]
gi|228665540|gb|EEL21020.1| Holliday junction resolvase [Bacillus cereus Rock1-3]
Length = 130
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 24 LGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPLNMNG 81
+GTK +G+A+SD G + ++ + +S + N+ ++GLP NMNG
Sbjct: 1 MGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLPKNMNG 60
Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q +D +AA
Sbjct: 61 TIGPRGEACQQFAENLREL-LQLDVVMWDERLSTMAAERLLISADVSRKKRKQVIDKMAA 119
Query: 142 ALILQEVLD 150
+ILQ LD
Sbjct: 120 VVILQGFLD 128
>gi|114799411|ref|YP_760995.1| hypothetical protein HNE_2300 [Hyphomonas neptunium ATCC 15444]
gi|123128643|sp|Q0BZU8|RUVX_HYPNA RecName: Full=Putative Holliday junction resolvase
gi|114739585|gb|ABI77710.1| conserved hypothetical protein TIGR00250 [Hyphomonas neptunium ATCC
15444]
Length = 151
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GT IG+A +D R A P +++KK+ + LL I+GLPLN++
Sbjct: 17 GIDPGTATIGVAATDRIRMMASPVETILKKKLAPSLERLLHIYDERAAVGLIVGLPLNVD 76
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS GPR S R V +++ + +P F DER ++ A I+ +R+ R ++D+ A
Sbjct: 77 GSMGPRAQSVRTLVSSLLKVR-DLPVTFQDERYSSAEAGDIMRAAGATRRNREARIDASA 135
Query: 141 AALILQEVLDRI 152
AA+ILQ+ L R+
Sbjct: 136 AAVILQDALSRL 147
>gi|28210758|ref|NP_781702.1| Holliday junction resolvase-like protein [Clostridium tetani E88]
gi|32130019|sp|Q896F1|RUVX_CLOTE RecName: Full=Putative Holliday junction resolvase
gi|28203196|gb|AAO35639.1| DNA integration/recombination protein [Clostridium tetani E88]
Length = 138
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G + IG+AISDP A + R + E+ + + GLP N
Sbjct: 3 ILGLDVGDRTIGVAISDPLGWTAQGVKTIKRSNLKNDIKEIEDICNEYKVDKIVSGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP+ F +++ +++ + WDERLTTV+A + +I+ ++SR KR + VD
Sbjct: 63 MNGTLGPQSEKVTEFC-DILKKELEKEIIMWDERLTTVAAHKAMIEGDLSRAKRKKIVDK 121
Query: 139 IAAALILQEVLDRI 152
IAA ILQ LD +
Sbjct: 122 IAAIYILQGYLDSV 135
>gi|302037044|ref|YP_003797366.1| putative holliday junction resolvase [Candidatus Nitrospira
defluvii]
gi|300605108|emb|CBK41441.1| predicted Holliday junction resolvase (modular protein) [Candidatus
Nitrospira defluvii]
Length = 203
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
Q I +ID G+KRIG A+SD A P R+ + + + ++G+
Sbjct: 3 GQRILAIDHGSKRIGFALSDELGWTAQPLETFYRRNPDADIRHIQDLVREHEVGQVLVGM 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL ++G GP F+ +++ + VP + WDER+TT +A+ +LI +V R+KR
Sbjct: 63 PLRLDGEIGPAAKVVAEFIQ-LLEPALSVPVITWDERMTTCAAEDLLIAADVGRRKRKGI 121
Query: 136 VDSIAAALILQEVL 149
VD IAAA++LQ L
Sbjct: 122 VDRIAAAILLQSYL 135
>gi|40889964|pdb|1VHX|A Chain A, Crystal Structure Of Putative Holliday Junction Resolvase
gi|40889965|pdb|1VHX|B Chain B, Crystal Structure Of Putative Holliday Junction Resolvase
Length = 150
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 3/137 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +DLGTK +G+A+SD A + + L LS I I ++G P
Sbjct: 5 ILGLDLGTKTLGVALSDEXGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFP 64
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
N NG+ GPR +++ F +++ VP V WDERLTT +A++ LI +VSR+KR + +
Sbjct: 65 KNXNGTVGPRGEASQTFAK-VLETTYNVPVVLWDERLTTXAAEKXLIAADVSRQKRKKVI 123
Query: 137 DSIAAALILQEVLDRIS 153
D AA ILQ LD ++
Sbjct: 124 DKXAAVXILQGYLDSLN 140
>gi|307243223|ref|ZP_07525394.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis
DSM 17678]
gi|306493351|gb|EFM65333.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis
DSM 17678]
Length = 138
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G IG+A+SD A + R L I + + GLP N
Sbjct: 6 IMGLDIGDNTIGVAVSDLMGMTAQGITTIKRSSKKNDIEALKKIIEERQVNLIVSGLPKN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP+ F ++I ++ + FWDERLTTVSA+++LI+ +V RK R + +D
Sbjct: 66 MNGTIGPQAEKVIKFC-DLIKEELGMEIKFWDERLTTVSAEKMLIEGDVRRKNRKKVIDK 124
Query: 139 IAAALILQEVLDRI 152
+AA LILQ LD I
Sbjct: 125 LAAVLILQGYLDSI 138
>gi|251798321|ref|YP_003013052.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2]
gi|247545947|gb|ACT02966.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2]
Length = 138
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D G + IG+A+SD A + +++ + + + ++GLP NMN
Sbjct: 5 GLDYGDRNIGVAVSDAFGWTAQGLETVHKRRDGGEMDRIAELVKEHEVTEIVVGLPKNMN 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
+ GPR + AF + + + +P WDERLTTVSA++ L++ +VSRKKR +D +A
Sbjct: 65 NTIGPRGEISMAFAEQL-QQTLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVIDKMA 123
Query: 141 AALILQEVLD 150
A LILQ LD
Sbjct: 124 ATLILQNYLD 133
>gi|89895164|ref|YP_518651.1| hypothetical protein DSY2418 [Desulfitobacterium hafniense Y51]
gi|219669581|ref|YP_002460016.1| Holliday junction resolvase-like protein [Desulfitobacterium
hafniense DCB-2]
gi|146325570|sp|Q24UT5|RUVX_DESHY RecName: Full=Putative Holliday junction resolvase
gi|254767513|sp|B8FQB9|RUVX_DESHD RecName: Full=Putative Holliday junction resolvase
gi|89334612|dbj|BAE84207.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539841|gb|ACL21580.1| Holliday junction resolvase YqgF [Desulfitobacterium hafniense
DCB-2]
Length = 142
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D G + IG+A+SD A + R + EL + + + ++G P N
Sbjct: 3 IMGLDFGERTIGVAVSDAMLLTAQGVKTIRRS--PKELEELKTMLQDYEVDHIVLGYPKN 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GPR +T F ++ + +P WDERL+T+ AQ+ L++ +VSR KR Q +D
Sbjct: 61 MNGTLGPRAQATEEFAQ-ILKEEFGLPVTLWDERLSTMGAQRSLLEADVSRAKRKQVIDK 119
Query: 139 IAAALILQEVLDRI 152
+AA ILQ LD I
Sbjct: 120 MAAVFILQGYLDYI 133
>gi|229086950|ref|ZP_04219107.1| Holliday junction resolvase [Bacillus cereus Rock3-44]
gi|228696326|gb|EEL49154.1| Holliday junction resolvase [Bacillus cereus Rock3-44]
Length = 137
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+GTK +G+AISD G + ++ + +S + N+ ++GLP
Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGIFGFDRVSELVKQYNVDKIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR + + + ++ + + + + WDERL+T++A+++LI +VSRKKR Q +
Sbjct: 63 KNMNGTIGPRGEACQQYAESLREL-LQLEVILWDERLSTMAAERLLISADVSRKKRKQVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 122 DKMAAVVILQGYLD 135
>gi|229918437|ref|YP_002887083.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b]
gi|229469866|gb|ACQ71638.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b]
Length = 140
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAH--PRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +D+G+K IG+A+SD A + + L FI ++ ++G P
Sbjct: 4 VMGLDVGSKTIGVAVSDLMGWTAQGVETVYWTEPDFDEAVRLLRPFIEQYDVKEVVVGHP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR ++ AF + + +P V DERLTT+ A+++LI +VSRKKR +
Sbjct: 64 KNMNGTVGPRGEASEAFAEAFTE-QTGLPCVLVDERLTTMQAERMLISADVSRKKRKAVI 122
Query: 137 DSIAAALILQEVLDR 151
D +AA +ILQ LDR
Sbjct: 123 DKMAAVMILQNYLDR 137
>gi|24380413|ref|NP_722368.1| Holliday junction resolvase-like protein [Streptococcus mutans
UA159]
gi|32130029|sp|Q8DRX8|RUVX_STRMU RecName: Full=Putative Holliday junction resolvase
gi|24378438|gb|AAN59674.1|AE015030_4 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 139
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 84/140 (60%), Gaps = 10/140 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+G+K +G+A+SDP A + + + + + L+ + + F++GLP
Sbjct: 3 IIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFDRLADLVKDYKVEKFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
NMN + GPRV +++A+ + + D +P + DERLTTV A+++L++ +VSR KR
Sbjct: 63 KNMNNTSGPRVEASQAYGKKIKELFD----LPVEYQDERLTTVQAERMLVEQADVSRGKR 118
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 119 KKVIDKLAAQLILQNYLDRM 138
>gi|306826005|ref|ZP_07459341.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|306828767|ref|ZP_07461959.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
6249]
gi|315612311|ref|ZP_07887225.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
ATCC 49296]
gi|331267155|ref|YP_004326785.1| Holliday junction resolvase-like protein,putative ribonuclease
[Streptococcus oralis Uo5]
gi|304428945|gb|EFM32033.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
6249]
gi|304431721|gb|EFM34701.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|315315704|gb|EFU63742.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
ATCC 49296]
gi|326683827|emb|CBZ01445.1| Holliday junction resolvase-like protein,putative ribonuclease
[Streptococcus oralis Uo5]
Length = 136
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
+D+G+K +G+AISDP A + + + Q + + + + + F++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +D
Sbjct: 62 MNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVID 120
Query: 138 SIAAALILQEVLDR 151
+AA LILQ LDR
Sbjct: 121 KLAAQLILQNYLDR 134
>gi|239947537|ref|ZP_04699290.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921813|gb|EER21837.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 156
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63
+++ + L PN P+ +ID G+K++G+A+S+ R A P + + KK+ T+L L+ I
Sbjct: 6 LQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSL--LNII 63
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122
+ +IGLP++M+G+ + + F + + + +P DERLTT +A L
Sbjct: 64 EKYKVCGVVIGLPIDMSGAVTEQTNIVMKFAEELAESINLPIPVYLQDERLTTKAANNFL 123
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
V RK R D++AA++IL+ VLD I L
Sbjct: 124 KSFGVKRKDRNNNDDAVAASMILETVLDSIKKL 156
>gi|317057236|ref|YP_004105703.1| Holliday junction resolvase YqgF [Ruminococcus albus 7]
gi|315449505|gb|ADU23069.1| Holliday junction resolvase YqgF [Ruminococcus albus 7]
Length = 140
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G R G+A+SD A P + + A ++ + I+GLP+N
Sbjct: 3 ILAVDYGDARTGIAVSDNSEMLASPVCTITEYHADRLAQKIADIAKEQGAGEIIVGLPIN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG++G R F +M+ V V WDER TTV+A + L + NV KKR VD+
Sbjct: 63 MNGTKGVRAEKCEEFA-DMLRALVSVEVRMWDERSTTVTAHRFLNETNVRGKKRKAVVDT 121
Query: 139 IAAALILQEVLDRISFLESSKG 160
+AA +IL+ L +F KG
Sbjct: 122 VAATIILESYL---AFRSKHKG 140
>gi|118442957|ref|YP_878351.1| Holliday junction resolvase-like protein [Clostridium novyi NT]
gi|167012715|sp|A0Q149|RUVX_CLONN RecName: Full=Putative Holliday junction resolvase
gi|118133413|gb|ABK60457.1| Putative Holliday junction resolvase [Clostridium novyi NT]
Length = 135
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D+G + IG+A+SDP A + RK V + EL + I GLP N
Sbjct: 3 VLGLDVGDRTIGVAVSDPLGFTAQGITTVHRKSVKEDIDELKKICKEYAVELIISGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G + F ++ ++ +P WDERLTTV+A + +++ N+SR KR + VD
Sbjct: 63 MNGTVGEQGEKVIEFCE-LLKSELKMPIKMWDERLTTVAAHRAMLEANLSRAKRKKIVDK 121
Query: 139 IAAALILQEVLDRI 152
+AA ILQ LD I
Sbjct: 122 MAATYILQGYLDSI 135
>gi|293364362|ref|ZP_06611088.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC
35037]
gi|291317208|gb|EFE57635.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC
35037]
Length = 139
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
I +D+G+K +G+AISDP A + + + Q + + + + F++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 63 KNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAQLILQNYLDR 137
>gi|229586597|ref|YP_002845098.1| Holliday junction resolvase-like protein [Rickettsia africae ESF-5]
gi|259495712|sp|C3PN45|RUVX_RICAE RecName: Full=Putative Holliday junction resolvase
gi|228021647|gb|ACP53355.1| Putative endonuclease involved in recombination [Rickettsia africae
ESF-5]
Length = 154
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 84/149 (56%), Gaps = 5/149 (3%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63
+++ + L PN P+ +ID G+K++G+A+S+ A P + + KK+ T+L L+ I
Sbjct: 6 LQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINKKIVITSL--LNII 63
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
+ IIGLP++M+G+ + + F + + + +P DERLTT +A +L
Sbjct: 64 EKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEEL-AKSINLPIYLQDERLTTKAANNLLK 122
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
V RK R D++AA++IL+ VLD I
Sbjct: 123 SFGVKRKDRNNNDDAVAASMILETVLDSI 151
>gi|227510199|ref|ZP_03940248.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227513127|ref|ZP_03943176.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
ATCC 11577]
gi|227524342|ref|ZP_03954391.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
ATCC 8290]
gi|227083702|gb|EEI19014.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
ATCC 11577]
gi|227088573|gb|EEI23885.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
ATCC 8290]
gi|227190404|gb|EEI70471.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 144
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 82/136 (60%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
+ +D+G+K +G+A+SD G + ++ + LE ++ + + F++GLP
Sbjct: 3 LMGLDVGSKTVGVAVSDSLGWTSQGVEIIPIDEENGEFGLERVAQLVDKYEVDGFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
NMN S GPR ++ + + +++K +P F DERLTTV AQ++L + ++SR+KR +
Sbjct: 63 KNMNNSLGPRAEASEQY-GDRLEKKFKLPVDFEDERLTTVEAQRMLTEEADISRRKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAGLILQNYLDR 137
>gi|258538956|ref|YP_003173455.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
Lc 705]
gi|257150632|emb|CAR89604.1| Holliday junction resolvase [Lactobacillus rhamnosus Lc 705]
gi|328469825|gb|EGF40739.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
MTCC 5462]
Length = 144
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
+ +D+G++ +G+A+SDP A + + + Q L+ L +T + AF++GLP
Sbjct: 3 LMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
NMN S GPR ++A+ +++ +P F DERLTTV A ++LI + + SRK++ Q
Sbjct: 63 KNMNNSIGPRAEKSQAY-GDLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 122 IDKLAAQMILQNYLD 136
>gi|260881084|ref|ZP_05403565.2| putative holliday junction resolvase [Mitsuokella multacida DSM
20544]
gi|260849464|gb|EEX69471.1| putative holliday junction resolvase [Mitsuokella multacida DSM
20544]
Length = 138
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 4/132 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+D+G + IG+A+SD A + RK + L + + + GLP NM+
Sbjct: 6 SLDIGDRTIGIAVSDLLGLTAQGVETIRRKSLADDLKRLGELMQAYETKSLVSGLPKNMD 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G+EG R + F+ + +K Y V FWDERL+TV+A + LI+ +VSR+KR + +D
Sbjct: 66 GTEGDRCAIVKEFMAEV--KKAYPDVEVFFWDERLSTVAATRSLIEADVSRRKRKKVIDK 123
Query: 139 IAAALILQEVLD 150
+AA ILQ LD
Sbjct: 124 MAAVFILQGFLD 135
>gi|282856373|ref|ZP_06265652.1| RNAse YqgF [Pyramidobacter piscolens W5455]
gi|282585744|gb|EFB91033.1| RNAse YqgF [Pyramidobacter piscolens W5455]
Length = 140
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 2/132 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+GT RIG+A+SDP FA V K EL + ++GLP+
Sbjct: 4 IICLDVGTVRIGVAVSDPLGMFAQG--IAVWKADGPWLDELERAFERYDTGCLLVGLPIR 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+ GP + V + R V +WDER +T +A L++ NVSR+KR Q VD
Sbjct: 62 EDGTIGPSAQHVQDVVKEIQRRFPMVTVRYWDERYSTCTATSYLLEGNVSRRKRKQSVDK 121
Query: 139 IAAALILQEVLD 150
IAAA+ILQ +D
Sbjct: 122 IAAAVILQSYMD 133
>gi|199598089|ref|ZP_03211512.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
HN001]
gi|258507765|ref|YP_003170516.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
GG]
gi|199591015|gb|EDY99098.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
HN001]
gi|257147692|emb|CAR86665.1| Holliday junction resolvase [Lactobacillus rhamnosus GG]
gi|259649112|dbj|BAI41274.1| holliday junction resolvase-like protein [Lactobacillus rhamnosus
GG]
Length = 144
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
+ +D+G++ +G+A+SDP A + + + Q L+ L +T + AF++GLP
Sbjct: 3 LMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
NMN S GPR ++A+ +++ +P F DERLTTV A ++LI + + SRK++ Q
Sbjct: 63 KNMNNSIGPRAEKSQAY-GDLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 122 IDKLAAQMILQNYLD 136
>gi|313896256|ref|ZP_07829809.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975055|gb|EFR40517.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137
str. F0430]
Length = 142
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 71/131 (54%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+D+G IG+A+SD A + R L + + + A + GLP +MN
Sbjct: 6 SLDIGDVTIGIAVSDLLGLTAQGVETIRRTTPAADFERLGTLMRDYEVDALVAGLPKHMN 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG R RAF+ R V +WDERL+TV+A + L++ +VSRKKR + +D +A
Sbjct: 66 GDEGTRCEMVRAFMAEAAQRFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRRKVIDKMA 125
Query: 141 AALILQEVLDR 151
A ILQ LDR
Sbjct: 126 AVYILQGFLDR 136
>gi|282889573|ref|ZP_06298114.1| hypothetical protein pah_c002o006 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500496|gb|EFB42774.1| hypothetical protein pah_c002o006 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 155
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 76/139 (54%), Gaps = 8/139 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN------IAAF 71
I S+D G RIG+AISD + A + KKV +T +L+ I I
Sbjct: 9 IVSLDYGLARIGIAISDESQTIASSLKTVAAEKKVERTVAKLVEEINAHQQRLACEIEEI 68
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLPL M+G +G + FV + +P V WDERLTTV A++ L + + +RKK
Sbjct: 69 VVGLPLLMSGKKGFQADEVLHFVE-LFKAATPIPIVTWDERLTTVQAERALREGSFNRKK 127
Query: 132 RIQKVDSIAAALILQEVLD 150
R + +D++AA LILQ LD
Sbjct: 128 RSKVIDAVAAVLILQNYLD 146
>gi|332704470|ref|ZP_08424558.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis
Bay]
gi|332554619|gb|EGJ51663.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis
Bay]
Length = 163
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N + ID G KR+GLA++D G R A PRP L R E+ E + A ++GL
Sbjct: 28 NVRLLGIDFGLKRVGLALTDEGGRMAFPRPALARTSNDALIAEIGRMAAEEKVEAVVLGL 87
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ M+G E R I K + DERLT+ AQ L + VS KK K
Sbjct: 88 PIAMDGEETDLSRQVRNLARK-ITSKTGLKVHLMDERLTSAEAQARLREAGVSSKKMKGK 146
Query: 136 VDSIAAALILQEVLDR 151
+DS AA LIL+ L R
Sbjct: 147 LDSGAAVLILEAYLGR 162
>gi|317471885|ref|ZP_07931220.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA]
gi|316900658|gb|EFV22637.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA]
Length = 138
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 78/135 (57%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D GTK +G+A+SD A P + RK K+ +T + + + ++G
Sbjct: 3 ILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIVAEYKVEKIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R +T AF +++ R+ + + WDERL+TV++ ++L++ V R+ R +
Sbjct: 63 PKNMNNTIGERGMATEAFRDSLV-RRTGLDVILWDERLSTVASNKVLMESGVRREHRKKV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA++ILQ LD
Sbjct: 122 IDQVAASMILQGYLD 136
>gi|89101195|ref|ZP_01174025.1| Holliday junction resolvase-like protein [Bacillus sp. NRRL
B-14911]
gi|89084081|gb|EAR63252.1| Holliday junction resolvase-like protein [Bacillus sp. NRRL
B-14911]
Length = 111
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
+L I +++ ++GLP NMNG+ GPR +++ F + +R +P V WDERLTT++
Sbjct: 17 QLGKIIKEYDVSTIVVGLPKNMNGTIGPRGEASQFFAGEL-ERLFGLPVVLWDERLTTMA 75
Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
A+++L++ +VSRKKR + +D +AA++ILQ LD
Sbjct: 76 AERVLLEADVSRKKRKKVIDKMAASMILQGYLD 108
>gi|169829318|ref|YP_001699476.1| putative Holliday junction resolvase [Lysinibacillus sphaericus
C3-41]
gi|168993806|gb|ACA41346.1| Putative Holliday junction resolvase [Lysinibacillus sphaericus
C3-41]
Length = 135
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 79/132 (59%), Gaps = 3/132 (2%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+A+SD G + + + ++ ++ + E I F++G P N
Sbjct: 2 GLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYAITQFVVGFPTN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSR+KR Q +D
Sbjct: 62 MNNTVGPRGEASENY-KKLLEETFSLPVTLWDERLTTMAAERMLIEADVSRRKRKQVIDK 120
Query: 139 IAAALILQEVLD 150
+AA +I+Q LD
Sbjct: 121 MAAVMIVQGYLD 132
>gi|291548156|emb|CBL21264.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. SR1/5]
Length = 150
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
+ +D G+K +G+A+SDP A + RK K+ +T + I+ + ++G
Sbjct: 3 VLGLDYGSKTVGVAVSDPLGLTAQGVETVWRKQENKLRRTLARIEEIISEYQVTEIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R + F M++++ +P V WDERLTT++A + L + V ++ R Q
Sbjct: 63 PKNMNNTVGERAEKSLEF-KEMLEKRTGLPVVMWDERLTTMAADRTLEETGVHKEDRKQY 121
Query: 136 VDSIAAALILQEVLDRISF 154
+D +AA ILQ LD ++
Sbjct: 122 LDQVAAVFILQGYLDAAAY 140
>gi|148380517|ref|YP_001255058.1| hypothetical protein CBO2562 [Clostridium botulinum A str. ATCC
3502]
gi|153933531|ref|YP_001384804.1| Holliday junction resolvase-like protein [Clostridium botulinum A
str. ATCC 19397]
gi|153935898|ref|YP_001388274.1| Holliday junction resolvase-like protein [Clostridium botulinum A
str. Hall]
gi|153940927|ref|YP_001391859.1| Holliday junction resolvase-like protein [Clostridium botulinum F
str. Langeland]
gi|168180549|ref|ZP_02615213.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum
NCTC 2916]
gi|168182640|ref|ZP_02617304.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf]
gi|170757368|ref|YP_001782177.1| Holliday junction resolvase-like protein [Clostridium botulinum B1
str. Okra]
gi|170760496|ref|YP_001787880.1| Holliday junction resolvase-like protein [Clostridium botulinum A3
str. Loch Maree]
gi|226949917|ref|YP_002805008.1| hypothetical protein TIGR00250 [Clostridium botulinum A2 str.
Kyoto]
gi|237796000|ref|YP_002863552.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4
str. 657]
gi|167012712|sp|A7FWJ3|RUVX_CLOB1 RecName: Full=Putative Holliday junction resolvase
gi|167012713|sp|A5I4Z3|RUVX_CLOBH RecName: Full=Putative Holliday junction resolvase
gi|167012714|sp|A7GGE9|RUVX_CLOBL RecName: Full=Putative Holliday junction resolvase
gi|226725504|sp|B1IJG5|RUVX_CLOBK RecName: Full=Putative Holliday junction resolvase
gi|226725505|sp|B1KXB5|RUVX_CLOBM RecName: Full=Putative Holliday junction resolvase
gi|254767507|sp|C1FTB8|RUVX_CLOBJ RecName: Full=Putative Holliday junction resolvase
gi|259495699|sp|C3L148|RUVX_CLOB6 RecName: Full=Putative Holliday junction resolvase
gi|148290001|emb|CAL84120.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152929575|gb|ABS35075.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A
str. ATCC 19397]
gi|152931812|gb|ABS37311.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A
str. Hall]
gi|152936823|gb|ABS42321.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F
str. Langeland]
gi|169122580|gb|ACA46416.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum B1
str. Okra]
gi|169407485|gb|ACA55896.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A3
str. Loch Maree]
gi|182668482|gb|EDT80461.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum
NCTC 2916]
gi|182674156|gb|EDT86117.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf]
gi|226841351|gb|ACO84017.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A2
str. Kyoto]
gi|229261948|gb|ACQ52981.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4
str. 657]
gi|295319884|gb|ADG00262.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F
str. 230613]
Length = 137
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
I +D+G + IG+AISDP F +R+K LE + I + + + GLP
Sbjct: 3 ILGLDIGDRTIGIAISDP-LGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ F ++I + + WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTLGPQSEKVLEFC-DLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA ILQ LD +S
Sbjct: 121 KVAATYILQGYLDSLS 136
>gi|91205622|ref|YP_537977.1| Holliday junction resolvase-like protein [Rickettsia bellii
RML369-C]
gi|157827335|ref|YP_001496399.1| Holliday junction resolvase-like protein [Rickettsia bellii OSU
85-389]
gi|146325604|sp|Q1RIC6|RUVX_RICBR RecName: Full=Putative Holliday junction resolvase
gi|167012755|sp|A8GU80|RUVX_RICB8 RecName: Full=Putative Holliday junction resolvase
gi|91069166|gb|ABE04888.1| Putative endonuclease [Rickettsia bellii RML369-C]
gi|157802639|gb|ABV79362.1| Holliday junction resolvase-like protein [Rickettsia bellii OSU
85-389]
Length = 154
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 1/150 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+++ + L PN P+ SID G+K+IG+AIS+ R A P + LL I
Sbjct: 6 LQEFYRLLLPNAPLISIDYGSKKIGIAISNQERNIAMPLNIITEASKKAIIASLLEKIEQ 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+IGLP++M+G + + F + + + +P DERLTT +A L
Sbjct: 66 YKACGIVIGLPIDMSGMQTEQSAIVIKFAEEL-TKSINLPIYLQDERLTTKAANNFLKSF 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ RK+R D++AA++IL+ VL+ I+ L
Sbjct: 125 GIKRKERNNNDDAVAASMILETVLNSINKL 154
>gi|227529702|ref|ZP_03959751.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
ATCC 49540]
gi|227350368|gb|EEJ40659.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
ATCC 49540]
Length = 147
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+A+SDP A + + + ++ ++ I + +A F++GLP N
Sbjct: 5 GLDVGSKTVGIAVSDPLGWTAQAVEIIPINEDEEIFGIDRVAEIVKQRQVAGFVVGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
MN +EGPRV ++ + + R +P F DERLTTV A ++L+ + ++SR K+ + +D
Sbjct: 65 MNNTEGPRVEASHHYGELLKKRFPSIPVDFQDERLTTVEAHRMLVEEADISRAKQKKVID 124
Query: 138 SIAAALILQEVLDR 151
+AA ILQ LDR
Sbjct: 125 EVAATFILQSYLDR 138
>gi|332654093|ref|ZP_08419837.1| putative Holliday junction resolvase [Ruminococcaceae bacterium
D16]
gi|332517179|gb|EGJ46784.1| putative Holliday junction resolvase [Ruminococcaceae bacterium
D16]
Length = 140
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +ID G G+AISDP A + +K EL + + ++G P N
Sbjct: 3 VMAIDYGDAHTGVAISDPTGFLAGMTTTIHSRKAEVVLSELARLVKEHQVDQLVMGFPRN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+EGPR R F + P V WDER TTV A +IL + + KKR + VD+
Sbjct: 63 MDGTEGPRAQLYRDFAAQVAQATGLEP-VLWDERRTTVDAHRILAEGGKNAKKRKKTVDA 121
Query: 139 IAAALILQEVLD 150
+AA+LIL+ LD
Sbjct: 122 VAASLILEGYLD 133
>gi|322806899|emb|CBZ04469.1| putative Holliday junction resolvase [Clostridium botulinum H04402
065]
Length = 137
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
I +D+G + IG+AISDP F +R+K LE + I + + + GLP
Sbjct: 3 ILGLDIGDRTIGIAISDP-LGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ F ++I + + WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTLGPQSEKVLEFC-DLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA ILQ LD +S
Sbjct: 121 KVAATYILQGYLDSLS 136
>gi|229553800|ref|ZP_04442525.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
LMS2-1]
gi|229312823|gb|EEN78796.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
LMS2-1]
Length = 144
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIGLP 76
+ +D+G++ +G+A+SDP A + + + Q L L +T + AF++GLP
Sbjct: 3 LMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLTRLKELVTQYEVTAFVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
NMN S GPR ++A+ +++ +P F DERLTTV A ++LI + + SRK++ Q
Sbjct: 63 KNMNNSIGPRAEKSQAY-GDLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 122 IDKLAAQMILQNYLD 136
>gi|227874508|ref|ZP_03992680.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Oribacterium sinus F0268]
gi|227839652|gb|EEJ50110.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Oribacterium sinus F0268]
Length = 141
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 78/134 (58%), Gaps = 4/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I ++D G+K +GLAI+DP P + R+ K+ +T E+ + ++G
Sbjct: 3 ILALDYGSKTVGLAITDPLGIIVQPLKTIWREREGKLRKTVEEIQETCKEYQVEELVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +M+GSEG RV AF M+ +K+ +P +DERL+T+ A++IL + V + ++ +
Sbjct: 63 PCHMDGSEGERVERVLAF-QEMLKKKIELPIHLYDERLSTMEAEEILRENGVPKDRQKEV 121
Query: 136 VDSIAAALILQEVL 149
+D +AA +IL++ L
Sbjct: 122 LDQVAAQVILEDYL 135
>gi|255655297|ref|ZP_05400706.1| putative holliday junction resolvase [Clostridium difficile
QCD-23m63]
gi|296451281|ref|ZP_06893021.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP08]
gi|296880367|ref|ZP_06904330.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP07]
gi|296259887|gb|EFH06742.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP08]
gi|296428608|gb|EFH14492.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP07]
Length = 141
Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+A+SD A + R + EL + I + + + GLP N
Sbjct: 6 IMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGLPKN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP+ F ++ + + FWDERL+TV+A++ L++ +VSR+KR + +D
Sbjct: 66 MNGTLGPQGEKVIKFCE-LVKEETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKVIDM 124
Query: 139 IAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 125 LAAVIILQGYLD 136
>gi|317495258|ref|ZP_07953628.1| hypothetical protein HMPREF0432_00230 [Gemella moribillum M424]
gi|316914680|gb|EFV36156.1| hypothetical protein HMPREF0432_00230 [Gemella moribillum M424]
Length = 141
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73
++ I +D G+K IG+A+SD G + ++V ++ + + E NI ++
Sbjct: 3 DKRIMGLDYGSKTIGVAVSDLLGMTAQGVETININEQVKDFKIKRIKELVNEYNIGKIVV 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR
Sbjct: 63 GLPKNMDNSIGFRGEATLYFVEVLKKKIKSVEVILQDERLTTMGAERVLLEANVSRKKRK 122
Query: 134 QKVDSIAAALILQEVLDR 151
+D +AA LILQ LD+
Sbjct: 123 DVIDKMAAVLILQTYLDK 140
>gi|19746980|ref|NP_608116.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS8232]
gi|28896707|ref|NP_803057.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
SSI-1]
gi|50915141|ref|YP_061113.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10394]
gi|71904442|ref|YP_281245.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS6180]
gi|94989437|ref|YP_597538.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS9429]
gi|94993326|ref|YP_601425.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS2096]
gi|94995284|ref|YP_603382.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10750]
gi|139474553|ref|YP_001129269.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
str. Manfredo]
gi|306826480|ref|ZP_07459791.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
ATCC 10782]
gi|54039589|sp|P67495|RUVX_STRP8 RecName: Full=Putative Holliday junction resolvase
gi|54042293|sp|P67494|RUVX_STRP3 RecName: Full=Putative Holliday junction resolvase
gi|62900945|sp|Q5X9I3|RUVX_STRP6 RecName: Full=Putative Holliday junction resolvase
gi|118597224|sp|Q1J498|RUVX_STRPF RecName: Full=Putative Holliday junction resolvase
gi|146325612|sp|Q1J9D0|RUVX_STRPB RecName: Full=Putative Holliday junction resolvase
gi|146325613|sp|Q1JJH9|RUVX_STRPC RecName: Full=Putative Holliday junction resolvase
gi|146325614|sp|Q48QX0|RUVX_STRPM RecName: Full=Putative Holliday junction resolvase
gi|167016512|sp|A2RGU5|RUVX_STRPG RecName: Full=Putative Holliday junction resolvase
gi|19749234|gb|AAL98615.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|28811961|dbj|BAC64890.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|50904215|gb|AAT87930.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10394]
gi|71803537|gb|AAX72890.1| hypothetical protein M28_Spy1780 [Streptococcus pyogenes MGAS6180]
gi|94542945|gb|ABF32994.1| endonuclease involved in recombination [Streptococcus pyogenes
MGAS9429]
gi|94546834|gb|ABF36881.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS2096]
gi|94548792|gb|ABF38838.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10750]
gi|134272800|emb|CAM31077.1| putative Holliday junction resolvase [Streptococcus pyogenes str.
Manfredo]
gi|304431339|gb|EFM34337.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
ATCC 10782]
Length = 139
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
I +D+G+K +G+AISDP A + K+ + E L + + F+I
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVI 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN + GPRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR
Sbjct: 60 GLPKNMNNTNGPRVDASITY-GNHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKR 118
Query: 133 IQKVDSIAAALILQEVLDR 151
+ +D +AA LILQ L+R
Sbjct: 119 KKVIDKLAAQLILQNYLNR 137
>gi|304436654|ref|ZP_07396623.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370350|gb|EFM24006.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 143
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+DLG IG+A+SD A + R + L + + A + GLP +MN
Sbjct: 6 SLDLGDATIGVAVSDLLGLTAQGVETVRRTTLEADIARLGQLMQEYEVDALVAGLPKHMN 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG R RAF+ + + +WDERL+TV+A + LI +VSRKKR + +D +A
Sbjct: 66 GDEGERCSIVRAFMAKVEEHFPRTEVHYWDERLSTVAASRALIAGDVSRKKRRKVIDKMA 125
Query: 141 AALILQEVLDR 151
A ILQ LDR
Sbjct: 126 AVYILQGFLDR 136
>gi|307702671|ref|ZP_07639623.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|307623787|gb|EFO02772.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
Length = 136
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 81/134 (60%), Gaps = 4/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
+D+G+K +G+AISDP A + + + Q + + + + F++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +D
Sbjct: 62 MNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVID 120
Query: 138 SIAAALILQEVLDR 151
+AA LILQ LDR
Sbjct: 121 KLAAQLILQNYLDR 134
>gi|297621335|ref|YP_003709472.1| Putative Holliday junction resolvase [Waddlia chondrophila WSU
86-1044]
gi|297376636|gb|ADI38466.1| Putative Holliday junction resolvase [Waddlia chondrophila WSU
86-1044]
Length = 148
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN------IAAF 71
I ID G KRIGLAISD A F KK+ +T L+ + +
Sbjct: 5 IIGIDYGMKRIGLAISDETHLIASAIETFEASKKMEETVAALVKRLEEHQKEKGYELKEI 64
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++G PL MNG G F + + + +P + WDERLT+V A++ +++ + +RKK
Sbjct: 65 VVGFPLKMNGKAGFISDEVTLFAETL-SKALSIPIIKWDERLTSVQAERAMMEGSYNRKK 123
Query: 132 RIQKVDSIAAALILQEVLD 150
R +K+D I+A +ILQ LD
Sbjct: 124 RTKKLDQISAVIILQNYLD 142
>gi|241890070|ref|ZP_04777368.1| putative Holliday junction resolvase [Gemella haemolysans ATCC
10379]
gi|241863692|gb|EER68076.1| putative Holliday junction resolvase [Gemella haemolysans ATCC
10379]
Length = 142
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73
++ I +D G+K IG+A+SD G + ++V ++ + + E N+ ++
Sbjct: 3 DKRIMGLDYGSKTIGVAVSDLLGFTAQGIETININEQVKDFKIKRIKELVQEHNVGTIVV 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR
Sbjct: 63 GLPKNMDNSVGFRGEATLYFVEVLKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D +AA LILQ LD+++
Sbjct: 123 NVIDKMAAVLILQTYLDKLN 142
>gi|302385313|ref|YP_003821135.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1]
gi|302195941|gb|ADL03512.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1]
Length = 146
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+A+SD A + R+ K+ +T + I I I+G
Sbjct: 3 IMGLDYGSKTVGVAVSDLLGITAQGVETITREEENKLRKTCARIEELIREYEIETIILGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN S G R T F M+ R+ + + WDERLTTV++++IL + V R+ R
Sbjct: 63 PKNMNNSAGQRAEKTEQF-KEMLIRRTGLNVILWDERLTTVASERILQESGVRREHRKAV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 122 IDQVAAGLILQGYLD 136
>gi|154500404|ref|ZP_02038442.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC
29799]
gi|150270909|gb|EDM98192.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC
29799]
Length = 139
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G R G+AISDP A + +K A E+ + + ++G P N
Sbjct: 3 IMAIDYGDARTGIAISDPTGLLAGYTTVIHSRKSEVVAEEIARLVKEHGVEELVMGFPRN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+EGPR RAF + P V WDER TTV A IL K+ + VD+
Sbjct: 63 MDGTEGPRAELYRAFAQQVGQVTGLTP-VLWDERRTTVEAHNILHASGKRMKQHKKTVDA 121
Query: 139 IAAALILQEVLDR 151
+AA LIL+ L R
Sbjct: 122 VAATLILEGYLTR 134
>gi|187778852|ref|ZP_02995325.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC
15579]
gi|187772477|gb|EDU36279.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC
15579]
Length = 137
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
I +D+G + IG+A+SDP F +R+K LE + I + + + GLP
Sbjct: 3 ILGLDIGDRTIGVALSDP-LGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ F ++I V + WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTLGPQSEKVLEFC-DLIKEHVNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA ILQ LD +S
Sbjct: 121 KMAATYILQGYLDSLS 136
>gi|77408149|ref|ZP_00784895.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
COH1]
gi|77173249|gb|EAO76372.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
COH1]
Length = 136
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+AISDP A + + ++ + L+ + E + F++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN + GPRV +++ + + I +P + DERLTTV A+++L++ ++SR KR + +D
Sbjct: 62 MNNTSGPRVEASQVY-GDKITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVID 120
Query: 138 SIAAALILQEVLDRI 152
+AA LILQ LDR+
Sbjct: 121 KLAAQLILQNYLDRM 135
>gi|317131029|ref|YP_004090343.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3]
gi|315469008|gb|ADU25612.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3]
Length = 143
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D G R G+A+SDP A P + TQ + + ++GLP N
Sbjct: 3 VMAVDYGDARTGIALSDPSGFLASPVCVIHETDETQILAKTAEQVARTGAERVVVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GPR +AF ++ VP + +DER TT++AQ N KKR +D+
Sbjct: 63 MNGTLGPRAEKAQAFAK-ALEAACGVPVLLFDERRTTLTAQVYFNATNTRGKKRKNSIDA 121
Query: 139 IAAALILQEVLDRI 152
AA +ILQ+ LD +
Sbjct: 122 AAATIILQDYLDSV 135
>gi|205374237|ref|ZP_03227036.1| Holliday junction resolvase-like protein [Bacillus coahuilensis
m4-4]
Length = 138
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+GT+ +G+A+SD G + +++ E + + E ++ ++GLP
Sbjct: 3 IMGLDVGTRTVGVAVSDAFGWTAQGIETIKIHEELGFLGYERIKELVKEYEVSKIVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GPR +++ + + + K +P ++DERLTT+ A+++LI+ +VSR KR + +
Sbjct: 63 KNMNNTMGPRGEASQRYGEGLRE-KFGIPVDYYDERLTTMQAERVLIEADVSRGKRKKVI 121
Query: 137 DSIAAALILQEVLDR 151
D +AA +ILQ LDR
Sbjct: 122 DKMAAVMILQGYLDR 136
>gi|283770690|ref|ZP_06343582.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
H19]
gi|283460837|gb|EFC07927.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
H19]
Length = 142
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74
I +D+G++ +G+AISD A L + ++ + + +L+ I N++ +IG
Sbjct: 4 HKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVSTVVIG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR Q
Sbjct: 64 LPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQ 123
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA ILQ LD +
Sbjct: 124 VIDKMAAVFILQGYLDSL 141
>gi|210610063|ref|ZP_03288242.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787]
gi|210152674|gb|EEA83680.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787]
Length = 143
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
+ +D G+K +G+AISDP A + RK K+ QT + + + ++G
Sbjct: 3 VMGLDYGSKTVGVAISDPLGITAQGIETIHRKAENKLRQTLARIEELVKEYEVDKLVLGF 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MN + G R + M++R+ +P + WDERLTT+ A++ LI+ V R+ R +
Sbjct: 63 PKHMNNTIGDRAEKSLEL-KAMLERRTGLPVIMWDERLTTLEAERTLIESKVRREDRKKY 121
Query: 136 VDSIAAALILQEVLDRI 152
VD IAA ILQ LD I
Sbjct: 122 VDKIAAVFILQGYLDSI 138
>gi|331701290|ref|YP_004398249.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929]
gi|329128633|gb|AEB73186.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929]
Length = 144
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
+ +D+G+K +G+A+SD G + + + L+ +S + + F++GLP
Sbjct: 3 LMGLDVGSKTVGVAVSDQLGWTSQGVEIIRIDEDNKEFGLDRVSELVKKYQVDGFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
NMN S GPR +++ + + D K +P F DERLTTV AQ++L + +VSR KR +
Sbjct: 63 KNMNNSLGPRAEASQQYGKRLED-KFNLPVDFEDERLTTVEAQRMLTEEADVSRAKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 122 IDKLAAGLILQNYLDR 137
>gi|329770531|ref|ZP_08261909.1| Holliday junction resolvase [Gemella sanguinis M325]
gi|328836280|gb|EGF85949.1| Holliday junction resolvase [Gemella sanguinis M325]
Length = 142
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIG 74
+ I +D G+K IG+A+SD G + +++ ++ + + E N+ I+G
Sbjct: 4 KRIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVNEHNVGKIIVG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR
Sbjct: 64 LPKNMDNSIGFRGEATLYFVEVLKKKIKSVEIILQDERLTTMGAERVLLEANVSRKKRKN 123
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA LILQ LD+++
Sbjct: 124 VIDKMAAVLILQTYLDKLN 142
>gi|82751216|ref|YP_416957.1| Holliday junction resolvase-like protein [Staphylococcus aureus
RF122]
gi|146325611|sp|Q2YT62|RUVX_STAAB RecName: Full=Putative Holliday junction resolvase
gi|82656747|emb|CAI81176.1| probable Holliday junction resolvase [Staphylococcus aureus RF122]
Length = 142
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74
I +D+G++ +G+AISD A L + ++ + + +L+ I N+ +IG
Sbjct: 4 HKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR Q
Sbjct: 64 LPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQ 123
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA ILQ LD +
Sbjct: 124 LIDKMAAVFILQGYLDSL 141
>gi|15675863|ref|NP_270037.1| Holliday junction resolvase-like protein [Streptococcus pyogenes M1
GAS]
gi|71911609|ref|YP_283159.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS5005]
gi|32130060|sp|Q99XP4|RUVX_STRP1 RecName: Full=Putative Holliday junction resolvase
gi|13623097|gb|AAK34758.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71854391|gb|AAZ52414.1| endonuclease involved in recombination [Streptococcus pyogenes
MGAS5005]
Length = 139
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
I +D+G+K +G+AISDP A + K+ + E L + + F+I
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVI 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN + GPRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR
Sbjct: 60 GLPKNMNNTNGPRVDASITY-GNHIEHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKR 118
Query: 133 IQKVDSIAAALILQEVLDR 151
+ +D +AA LILQ L+R
Sbjct: 119 KKVIDKLAAQLILQNYLNR 137
>gi|21283295|ref|NP_646383.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MW2]
gi|49483861|ref|YP_041085.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MRSA252]
gi|49486449|ref|YP_043670.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MSSA476]
gi|57650498|ref|YP_186511.1| hypothetical protein SACOL1671 [Staphylococcus aureus subsp. aureus
COL]
gi|87160105|ref|YP_494268.1| hypothetical protein SAUSA300_1573 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88195425|ref|YP_500229.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|148268097|ref|YP_001247040.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus JH9]
gi|150394165|ref|YP_001316840.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus JH1]
gi|151221729|ref|YP_001332551.1| hypothetical protein NWMN_1517 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509843|ref|YP_001575502.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|221141114|ref|ZP_03565607.1| hypothetical protein SauraJ_05678 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253316599|ref|ZP_04839812.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|253732271|ref|ZP_04866436.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253733133|ref|ZP_04867298.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH130]
gi|255006401|ref|ZP_05145002.2| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257425741|ref|ZP_05602165.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257428401|ref|ZP_05604799.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431039|ref|ZP_05607418.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
68-397]
gi|257433725|ref|ZP_05610083.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257436640|ref|ZP_05612684.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|257793691|ref|ZP_05642670.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|258411010|ref|ZP_05681290.1| Holliday junction resolvase [Staphylococcus aureus A9763]
gi|258420188|ref|ZP_05683143.1| Holliday junction resolvase [Staphylococcus aureus A9719]
gi|258424042|ref|ZP_05686924.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|258438190|ref|ZP_05689474.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299]
gi|258443653|ref|ZP_05691992.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115]
gi|258446860|ref|ZP_05695014.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|258448774|ref|ZP_05696886.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224]
gi|258450557|ref|ZP_05698619.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|258453593|ref|ZP_05701571.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937]
gi|269203242|ref|YP_003282511.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus
ED98]
gi|282893119|ref|ZP_06301353.1| conserved hypothetical protein [Staphylococcus aureus A8117]
gi|282904197|ref|ZP_06312085.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus C160]
gi|282906023|ref|ZP_06313878.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908935|ref|ZP_06316753.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282911253|ref|ZP_06319055.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914421|ref|ZP_06322207.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M899]
gi|282916885|ref|ZP_06324643.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
D139]
gi|282919391|ref|ZP_06327126.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282920163|ref|ZP_06327888.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|282924716|ref|ZP_06332384.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|282928250|ref|ZP_06335855.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|283958377|ref|ZP_06375828.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus A017934/97]
gi|284024673|ref|ZP_06379071.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus 132]
gi|293503496|ref|ZP_06667343.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|293510513|ref|ZP_06669219.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M809]
gi|293531053|ref|ZP_06671735.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M1015]
gi|294848645|ref|ZP_06789391.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754]
gi|295406738|ref|ZP_06816543.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819]
gi|295428193|ref|ZP_06820825.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296276723|ref|ZP_06859230.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MR1]
gi|297207664|ref|ZP_06924099.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297245680|ref|ZP_06929545.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796]
gi|297590840|ref|ZP_06949478.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus MN8]
gi|300911746|ref|ZP_07129189.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH70]
gi|304380787|ref|ZP_07363454.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|54039586|sp|P67490|RUVX_STAAN RecName: Full=Putative Holliday junction resolvase
gi|54039587|sp|P67491|RUVX_STAAW RecName: Full=Putative Holliday junction resolvase
gi|54042291|sp|P67489|RUVX_STAAM RecName: Full=Putative Holliday junction resolvase
gi|62900903|sp|Q5HFE6|RUVX_STAAC RecName: Full=Putative Holliday junction resolvase
gi|62900976|sp|Q6G8V3|RUVX_STAAS RecName: Full=Putative Holliday junction resolvase
gi|62900977|sp|Q6GG87|RUVX_STAAR RecName: Full=Putative Holliday junction resolvase
gi|146325609|sp|Q2FGB0|RUVX_STAA3 RecName: Full=Putative Holliday junction resolvase
gi|146325610|sp|Q2FXW1|RUVX_STAA8 RecName: Full=Putative Holliday junction resolvase
gi|172048919|sp|A6QHF7|RUVX_STAAE RecName: Full=Putative Holliday junction resolvase
gi|189046106|sp|A6U285|RUVX_STAA2 RecName: Full=Putative Holliday junction resolvase
gi|189046107|sp|A5ITE1|RUVX_STAA9 RecName: Full=Putative Holliday junction resolvase
gi|189046108|sp|A8Z4F4|RUVX_STAAT RecName: Full=Putative Holliday junction resolvase
gi|21204735|dbj|BAB95431.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49241990|emb|CAG40687.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244892|emb|CAG43353.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57284684|gb|AAW36778.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus COL]
gi|87126079|gb|ABD20593.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|87202983|gb|ABD30793.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147741166|gb|ABQ49464.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp.
aureus JH9]
gi|149946617|gb|ABR52553.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp.
aureus JH1]
gi|150374529|dbj|BAF67789.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368652|gb|ABX29623.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|253724060|gb|EES92789.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253728889|gb|EES97618.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH130]
gi|257271435|gb|EEV03581.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257275242|gb|EEV06729.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278242|gb|EEV08884.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
68-397]
gi|257281818|gb|EEV11955.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257283991|gb|EEV14114.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|257787663|gb|EEV26003.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|257840160|gb|EEV64624.1| Holliday junction resolvase [Staphylococcus aureus A9763]
gi|257843899|gb|EEV68293.1| Holliday junction resolvase [Staphylococcus aureus A9719]
gi|257845663|gb|EEV69695.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|257848234|gb|EEV72225.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299]
gi|257851059|gb|EEV75002.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115]
gi|257854435|gb|EEV77384.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|257858052|gb|EEV80941.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224]
gi|257861715|gb|EEV84514.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|257864324|gb|EEV87074.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937]
gi|262075532|gb|ACY11505.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus
ED98]
gi|269941102|emb|CBI49488.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313551|gb|EFB43946.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|282317201|gb|EFB47575.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282319372|gb|EFB49724.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
D139]
gi|282321602|gb|EFB51927.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M899]
gi|282324948|gb|EFB55258.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327199|gb|EFB57494.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282331315|gb|EFB60829.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282590057|gb|EFB95139.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|282594511|gb|EFB99496.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|282595815|gb|EFC00779.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus C160]
gi|282764437|gb|EFC04563.1| conserved hypothetical protein [Staphylococcus aureus A8117]
gi|283470893|emb|CAQ50104.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ST398]
gi|283790526|gb|EFC29343.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290920321|gb|EFD97387.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M1015]
gi|291095162|gb|EFE25427.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|291466877|gb|EFF09397.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M809]
gi|294824671|gb|EFG41094.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754]
gi|294968485|gb|EFG44509.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819]
gi|295128551|gb|EFG58185.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296887681|gb|EFH26579.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297177331|gb|EFH36583.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796]
gi|297575726|gb|EFH94442.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus MN8]
gi|298694896|gb|ADI98118.1| probable Holliday junction resolvase [Staphylococcus aureus subsp.
aureus ED133]
gi|300885992|gb|EFK81194.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH70]
gi|302333290|gb|ADL23483.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302751445|gb|ADL65622.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|304340663|gb|EFM06596.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312437916|gb|ADQ76987.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH60]
gi|312830003|emb|CBX34845.1| uncharacterised protein family (UPF0081) family protein
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129897|gb|EFT85887.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS03]
gi|315195516|gb|EFU25903.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS00]
gi|315198687|gb|EFU29015.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS01]
gi|320140497|gb|EFW32351.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144036|gb|EFW35805.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus MRSA177]
gi|323439037|gb|EGA96769.1| Holliday junction resolvase-like protein [Staphylococcus aureus
O11]
gi|323442820|gb|EGB00445.1| Holliday junction resolvase-like protein [Staphylococcus aureus
O46]
gi|329314291|gb|AEB88704.1| Putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus T0131]
gi|329727568|gb|EGG64024.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21172]
gi|329728326|gb|EGG64763.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21189]
gi|329733081|gb|EGG69418.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21193]
Length = 142
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74
I +D+G++ +G+AISD A L + ++ + + +L+ I N+ +IG
Sbjct: 4 HKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR Q
Sbjct: 64 LPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQ 123
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA ILQ LD +
Sbjct: 124 VIDKMAAVFILQGYLDSL 141
>gi|229822860|ref|ZP_04448930.1| hypothetical protein GCWU000282_00149 [Catonella morbi ATCC 51271]
gi|229787673|gb|EEP23787.1| hypothetical protein GCWU000282_00149 [Catonella morbi ATCC 51271]
Length = 142
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 79/141 (56%), Gaps = 9/141 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL-----LSFITTENIAAFII 73
I +D+G+K +G+A+SD L ++ + A +L L + + +I
Sbjct: 5 IMGLDVGSKTVGVAVSDL---MGWTAQGLETIRIDEAAGDLGYDRLLELVDQHQVKELVI 61
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKR 132
GLP NMN S GPR ++ A+ + + + + DERLTT A+++L+ + NVSRKKR
Sbjct: 62 GLPKNMNNSLGPRAEASMAYGEGISKLRPELTIHYQDERLTTSQAERMLVTEGNVSRKKR 121
Query: 133 IQKVDSIAAALILQEVLDRIS 153
Q +D +AA +ILQ LDRI+
Sbjct: 122 KQVIDKLAAVIILQNYLDRIN 142
>gi|320529130|ref|ZP_08030222.1| conserved hypothetical protein TIGR00250 [Selenomonas artemidis
F0399]
gi|320138760|gb|EFW30650.1| conserved hypothetical protein TIGR00250 [Selenomonas artemidis
F0399]
Length = 138
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 71/131 (54%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+D+G IG+A+SD A + R + L + + + A + GLP +MN
Sbjct: 2 SLDIGDVTIGIAVSDLLGLTAQGVETIRRTTLAADFERLSTLMRDYEVDALVAGLPKHMN 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG R RAF+ V +WDERL+TV+A + L++ +VSRKKR + +D +A
Sbjct: 62 GDEGTRCEMVRAFMAEAAQCFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRRKVIDKMA 121
Query: 141 AALILQEVLDR 151
A ILQ LDR
Sbjct: 122 AVYILQGFLDR 132
>gi|332637231|ref|ZP_08416094.1| Holliday junction resolvase-like protein [Weissella cibaria KACC
11862]
Length = 144
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 10/139 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-----AFII 73
+ +D+G++ +G+A+SD A + ++ + E E +A F++
Sbjct: 4 VMGLDVGSRTVGVAVSDLLGWTAQGVEII---RINEDEKEFGIARMKELVAQFQPTGFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
GLP NMN + GPRV + RA+ +++ +P F DERLTTV A+++L++ + SRKKR
Sbjct: 61 GLPKNMNNTSGPRVDAARAY-GDLLTETFGLPIDFQDERLTTVEAERMLVEEADASRKKR 119
Query: 133 IQKVDSIAAALILQEVLDR 151
Q +D +AAALILQ LDR
Sbjct: 120 KQVIDKLAAALILQNYLDR 138
>gi|325262832|ref|ZP_08129568.1| putative Holliday junction resolvase [Clostridium sp. D5]
gi|324031926|gb|EGB93205.1| putative Holliday junction resolvase [Clostridium sp. D5]
Length = 148
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 5/145 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D GTK +G+AISD A + RK K+ +T + ++ + ++G
Sbjct: 3 IMGLDYGTKTVGVAISDALGFTAQGIETIQRKEENKLRRTLARIEELVSEYEVEKIVLGF 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MN G R + F +M+ R+ + + WDERLTTV A++ LI+ NV R+ R +
Sbjct: 63 PKHMNNDIGERAEKSLEF-RDMLVRRTGLEVIMWDERLTTVEAERTLIESNVRRENRKKY 121
Query: 136 VDSIAAALILQEVLDRISFLESSKG 160
+D IAA ILQ LD + +L+ G
Sbjct: 122 IDKIAAIFILQGYLDSV-YLQRQAG 145
>gi|126698882|ref|YP_001087779.1| putative holliday junction resolvase [Clostridium difficile 630]
gi|254974830|ref|ZP_05271302.1| putative holliday junction resolvase [Clostridium difficile
QCD-66c26]
gi|255092218|ref|ZP_05321696.1| putative holliday junction resolvase [Clostridium difficile CIP
107932]
gi|255100303|ref|ZP_05329280.1| putative holliday junction resolvase [Clostridium difficile
QCD-63q42]
gi|255306242|ref|ZP_05350414.1| putative holliday junction resolvase [Clostridium difficile ATCC
43255]
gi|255313957|ref|ZP_05355540.1| putative holliday junction resolvase [Clostridium difficile
QCD-76w55]
gi|255516637|ref|ZP_05384313.1| putative holliday junction resolvase [Clostridium difficile
QCD-97b34]
gi|255649736|ref|ZP_05396638.1| putative holliday junction resolvase [Clostridium difficile
QCD-37x79]
gi|260682892|ref|YP_003214177.1| putative holliday junction resolvase [Clostridium difficile CD196]
gi|260686490|ref|YP_003217623.1| putative holliday junction resolvase [Clostridium difficile R20291]
gi|306519845|ref|ZP_07406192.1| putative Holliday junction resolvase [Clostridium difficile
QCD-32g58]
gi|118597204|sp|Q18BF1|RUVX_CLOD6 RecName: Full=Putative Holliday junction resolvase
gi|115250319|emb|CAJ68141.1| putative Holliday junction resolvase [Clostridium difficile]
gi|260209055|emb|CBA62181.1| putative holliday junction resolvase [Clostridium difficile CD196]
gi|260212506|emb|CBE03438.1| putative holliday junction resolvase [Clostridium difficile R20291]
Length = 141
Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G K IG+A+SD A + R + EL + I + + + GLP N
Sbjct: 6 IMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGLPKN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP+ F ++ + + FWDERL+TV+A++ L++ +VSR+KR + +D
Sbjct: 66 MNGTLGPQGEKVIKFCE-LVKAETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKVIDM 124
Query: 139 IAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 125 LAAVIILQGYLD 136
>gi|15604198|ref|NP_220713.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. Madrid E]
gi|6226362|sp|Q9ZDJ8|RUVX_RICPR RecName: Full=Putative Holliday junction resolvase
gi|3860890|emb|CAA14790.1| unknown [Rickettsia prowazekii]
gi|292571936|gb|ADE29851.1| Putative endonuclease involved in recombination [Rickettsia
prowazekii Rp22]
Length = 156
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 5/149 (3%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFI 63
+++ + L PN+P+ +ID G+K+IG+A+SD A P + V KKV T+ LL+ I
Sbjct: 6 LQEFYRLLIPNKPLIAIDYGSKKIGVALSDQELSIAMPFNTITAVNKKVVITS--LLNII 63
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
+ +IGLP++M+G + + F + + + +P DERLTT SA L
Sbjct: 64 KKYKVCGIVIGLPIDMSGGVTQQTNIVMKFAEKL-KQSLGLPIYLQDERLTTKSANNFLK 122
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+ RK R D++AA++IL+ VL+ I
Sbjct: 123 SFGIKRKDRNHNDDAVAASMILEIVLNAI 151
>gi|325568881|ref|ZP_08145174.1| crossover junction endodeoxyribonuclease [Enterococcus
casseliflavus ATCC 12755]
gi|325157919|gb|EGC70075.1| crossover junction endodeoxyribonuclease [Enterococcus
casseliflavus ATCC 12755]
Length = 143
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G++ +G+A+SDP A + + + + L+ + E ++ F++GLP
Sbjct: 3 IMGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPR ++ A+ I+++ +P V+ DERLTTV A+++L++ N SR KR +
Sbjct: 63 KNMNNTIGPRAEASMAY-GAAIEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRKKV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 122 IDKLAAVMILQNYLD 136
>gi|283781683|ref|YP_003372438.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068]
gi|283440136|gb|ADB18578.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068]
Length = 153
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D GT RIGLAI+DP ++FA P R+ A E AA+++GLP++
Sbjct: 12 GVDYGTVRIGLAITDPEQKFASPLDNYTRRGGQADARYFQRVAQEERAAAWVVGLPVHTT 71
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSE + R F ++ +P +DER T+ A+++LI +SRK+R +D +A
Sbjct: 72 GSESQKSTEARQFA-KQLEELTKLPVFLFDERFTSADAEEMLIAAGMSRKERKSHLDKLA 130
Query: 141 AALILQEVL 149
A ++L L
Sbjct: 131 AQILLSAFL 139
>gi|189220288|ref|YP_001940928.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4]
gi|189187146|gb|ACD84331.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4]
Length = 168
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I S+D G K IGLA++D A P L + + +L I ++ I+GLP N
Sbjct: 25 ILSLDYGNKHIGLAVNDESFSIAIPLDPLPAEPYVKFIGKLKEIIVNYEVSLLIVGLPRN 84
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS GP R FV + + + +P F DERLTT A ++L + +++ +K+DS
Sbjct: 85 MDGSYGPAAEKVRQFVLKL-KQWIPIPVEFHDERLTTKLADRLLTQCGCNGREKKKKIDS 143
Query: 139 IAAALILQEVLD 150
AAA+ILQ LD
Sbjct: 144 YAAAVILQSYLD 155
>gi|319892670|ref|YP_004149545.1| Putative Holliday junction resolvase [Staphylococcus
pseudintermedius HKU10-03]
gi|317162366|gb|ADV05909.1| Putative Holliday junction resolvase [Staphylococcus
pseudintermedius HKU10-03]
gi|323464292|gb|ADX76445.1| Holliday junction resolvase, putative [Staphylococcus
pseudintermedius ED99]
Length = 142
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74
I +D+G++ +G+AISD A L + ++ + ++ L+ I EN+ +IG
Sbjct: 4 HKIIGLDVGSRTVGIAISDLMGWTAQGLDTLQINEEENELGIDALIDIIQKENVGTVVIG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN S G R ++ + + +R + + WDERL+T++A++ L++ +VSR KR +
Sbjct: 64 LPKNMNNSIGFRGEASLKYKDALAERMPNLEIIMWDERLSTMAAERSLLEADVSRAKRKK 123
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA ILQ LD ++
Sbjct: 124 VIDKMAAVFILQGYLDGLN 142
>gi|225848600|ref|YP_002728763.1| hypothetical protein SULAZ_0781 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644154|gb|ACN99204.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 138
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 11/140 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+GTKRIG+A+SDP A P ++ K + S I ++N++ +IGLP+
Sbjct: 4 ILALDIGTKRIGVAVSDPLGITAKPLDYI--KNDDNVFQNIKSLIESQNVSTVVIGLPIT 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVP---FVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+ G +G +V T+ F + K Y+P VF DER TT A++ L +KK I+
Sbjct: 62 LKGLQGQQVEYTKEFAEKL---KHYIPHINIVFIDERFTTSLAEKHL--SQTKKKKNIKD 116
Query: 136 -VDSIAAALILQEVLDRISF 154
+DS++A ILQ LD +SF
Sbjct: 117 YIDSLSAVFILQTYLDSLSF 136
>gi|167747070|ref|ZP_02419197.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662]
gi|167654030|gb|EDR98159.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662]
Length = 138
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 77/135 (57%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D GTK +G+A+SD A P + RK K+ +T + + ++G
Sbjct: 3 ILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIAAEYKVEKIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R +T AF +++ R+ + + WDERL+TV++ ++L++ V R+ R +
Sbjct: 63 PKNMNNTIGERGMATEAFRDSLV-RRTGLDVILWDERLSTVASNKVLMESGVRREHRKKV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA++ILQ LD
Sbjct: 122 IDQVAASMILQGYLD 136
>gi|153812697|ref|ZP_01965365.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174]
gi|149831213|gb|EDM86302.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174]
Length = 140
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K +G+A+SDP A + RK K+ +T ++ + I ++G
Sbjct: 3 ILGLDYGSKTVGVAVSDPLGVTAQRLETIWRKQENKLRRTLAQVEELVKEYEIEKIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R F M+ ++ + + WDERLTTVSA + L++ V R+ R +
Sbjct: 63 PKNMNNTVGERAEKALEF-GEMLKKRTGLEVIMWDERLTTVSADRALMEAGVRRENRKEY 121
Query: 136 VDSIAAALILQEVLDRISF 154
+D IAA ILQ LD +
Sbjct: 122 LDGIAAVFILQGYLDSLKM 140
>gi|323341645|ref|ZP_08081878.1| crossover junction endodeoxyribonuclease [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322464070|gb|EFY09263.1| crossover junction endodeoxyribonuclease [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 144
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPL 77
I +DLG+K G+A+SD +AHP L K + + L S I E + +G P
Sbjct: 5 IIGLDLGSKTCGVALSDGLGMYAHPVETLYYKVSIDELKEPLDSLIKKERVKVIALGFPK 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
MN G R + F ++ V DERLT+V A + LID +VSRKKR + VD
Sbjct: 65 MMNNDVGERAQISEEF-KKTLESWFNCEVVLIDERLTSVVANRQLIDQDVSRKKRKKVVD 123
Query: 138 SIAAALILQEVLDRISFLESS 158
+AA ILQ LD+ F+E +
Sbjct: 124 QLAAVHILQTYLDKRRFMEGN 144
>gi|229543745|ref|ZP_04432805.1| Holliday junction resolvase YqgF [Bacillus coagulans 36D1]
gi|229328165|gb|EEN93840.1| Holliday junction resolvase YqgF [Bacillus coagulans 36D1]
Length = 138
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 79/134 (58%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITT-ENIAAFIIGLP 76
I +D+G+K +G+A+SD G + + + + ++ + + ++G P
Sbjct: 3 IMGLDVGSKTVGVAVSDALGWTAQGIETIAINEAKGKFGFDRVAELAQIHGVEKIVVGFP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GPR +++ + + +++ +P + WDERL+T A++IL++ +VSRKKR + +
Sbjct: 63 KNMNNTIGPRAEASKVYAEEL-KKRLNLPVILWDERLSTAQAERILLEADVSRKKRKKVI 121
Query: 137 DSIAAALILQEVLD 150
D +AA++ILQ LD
Sbjct: 122 DKMAASVILQGFLD 135
>gi|21911333|ref|NP_665601.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS315]
gi|21905548|gb|AAM80404.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
Length = 136
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 10/137 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
+D+G+K +G+AISDP A + K+ + E L + + F+IGL
Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVIGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134
P NMN + GPRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR +
Sbjct: 59 PKNMNNTNGPRVDASITY-GNHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 117
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ L+R
Sbjct: 118 VIDKLAAQLILQNYLNR 134
>gi|28378868|ref|NP_785760.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
WCFS1]
gi|254557074|ref|YP_003063491.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
JDM1]
gi|300768026|ref|ZP_07077932.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308181068|ref|YP_003925196.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|32130018|sp|Q88V13|RUVX_LACPL RecName: Full=Putative Holliday junction resolvase
gi|28271705|emb|CAD64611.1| endonuclease involved in recombination (putative) [Lactobacillus
plantarum WCFS1]
gi|254046001|gb|ACT62794.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
JDM1]
gi|300494375|gb|EFK29537.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308046559|gb|ADN99102.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 144
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
+ +D+G++ +G+AISD A + + + + ++ ++ + E + F++GLP
Sbjct: 3 LMGLDVGSRTVGVAISDAFGWTAQGVEIIRINEDAEEFGIDRVAELVEELDAGGFVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
NMN + GPR + + + ++ + ++P F DERLTTV A+++L++ N SRKKR +
Sbjct: 63 KNMNNTLGPRAEAAQHY-GELLTARFHLPVDFEDERLTTVEAERMLVEEANTSRKKRKKV 121
Query: 136 VDSIAAALILQEVLDR 151
+D +AA+LILQ LDR
Sbjct: 122 IDKLAASLILQNYLDR 137
>gi|329766971|ref|ZP_08258499.1| Holliday junction resolvase [Gemella haemolysans M341]
gi|328837696|gb|EGF87321.1| Holliday junction resolvase [Gemella haemolysans M341]
Length = 142
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73
++ I +D G+K IG+A+SD G + +++ ++ + + E N+ ++
Sbjct: 3 DKRIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVQEHNVGKIVV 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR
Sbjct: 63 GLPKNMDNSVGFRGEATLFFVEVLKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D +AA LILQ LD+++
Sbjct: 123 DVIDKMAAVLILQTYLDKLN 142
>gi|167770376|ref|ZP_02442429.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM
17241]
gi|167667383|gb|EDS11513.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM
17241]
Length = 142
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G R GLA D A P L K ++ + + ++ I+G P+N
Sbjct: 3 ILAVDFGDARTGLACCDRTEYLASPIGVLHDKDFGSVLQKVAAAASEYDVQEIIVGHPIN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+EGPR F + + V VP WDER TTVSA L N KKR + +D
Sbjct: 63 MNGTEGPRAQLCADFAGQLA-KLVTVPVRLWDERGTTVSATGFLNATNTRGKKRKEVIDE 121
Query: 139 IAAALILQEVLD 150
+AA +IL+ L+
Sbjct: 122 VAATIILESYLN 133
>gi|313888091|ref|ZP_07821765.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845781|gb|EFR33168.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 138
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 5/138 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPL 77
I +D+G IG+AISD A P ++++ + A E + I EN + ++GLP
Sbjct: 4 ILGLDVGDVWIGVAISDALMLTAQP-LMTIKRESNKIAYEKIHEIIKENNVEKVVVGLPK 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GP+ F + ++ KV + +V DER+TT+ A+Q+LI+ +V R+ R + +
Sbjct: 63 NMNNTIGPQSEKVIKFAEKLKNKFKVEIEYV--DERMTTLMAEQVLIEGSVRRENRKKYI 120
Query: 137 DSIAAALILQEVLDRISF 154
D IAA ILQ LDRI+
Sbjct: 121 DKIAATYILQSYLDRINL 138
>gi|241896590|ref|ZP_04783886.1| crossover junction endodeoxyribonuclease [Weissella
paramesenteroides ATCC 33313]
gi|241870182|gb|EER73933.1| crossover junction endodeoxyribonuclease [Weissella
paramesenteroides ATCC 33313]
Length = 144
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 80/136 (58%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
I +D+G++ +G+A+SD A + + + + ++ + + F++GLP
Sbjct: 4 ILGLDVGSRTVGVAVSDQLGWTAQGVEIIPINEDEKEFGIDRMKELVAKYEPIGFVLGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
NMN + GPRV ++RA+ ++ +P F DERLTTV A+++LI + + SRKKR +
Sbjct: 64 KNMNNTSGPRVDASRAY-GELLKETFGLPIDFQDERLTTVEAERMLIEEADTSRKKRKKV 122
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 123 IDKLAAGLILQNYLDR 138
>gi|51473526|ref|YP_067283.1| Holliday junction resolvase-like protein [Rickettsia typhi str.
Wilmington]
gi|62900964|sp|Q68X41|RUVX_RICTY RecName: Full=Putative Holliday junction resolvase
gi|51459838|gb|AAU03801.1| possible Holliday junction resolvase [Rickettsia typhi str.
Wilmington]
Length = 156
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 1/147 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+++ + L PN+P+ +ID G+K+IG+A+SD A P + LL+ I
Sbjct: 6 LQEFYRLLIPNEPLIAIDYGSKKIGVALSDQALAIAMPLNTITELNQRVIITSLLNIIEK 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ +IGLP++M+G + + F + + V +P DERLTT SA L
Sbjct: 66 YQVCGIVIGLPIDMSGGVTKQTNIVMKFADKL-KQSVSLPIYLQDERLTTKSANNFLKSF 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152
+ RK R D++AA++IL+ VL+ I
Sbjct: 125 GIKRKDRNNNDDAVAASMILEIVLNAI 151
>gi|326803430|ref|YP_004321248.1| RNAse H domain protein, YqgF family [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651353|gb|AEA01536.1| RNAse H domain protein, YqgF family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 140
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 10/138 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
I +D+G+K +G+AISDP F + K+ + A + L I + +I
Sbjct: 3 IMGLDVGSKTVGVAISDP---FGWTAQGIETIKIDEEAGKFGFSRLRQLIEDYQVEKIVI 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
GLP NMN +EGPR ++R + +M +P + DERLTT +++ LI+ +VSRKKR
Sbjct: 60 GLPKNMNNTEGPRAEASRHY-GDMAIELFDLPVFYQDERLTTQQSERFLIEAADVSRKKR 118
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA LILQ LD
Sbjct: 119 KKVIDKLAAVLILQNYLD 136
>gi|87307204|ref|ZP_01089349.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM
3645]
gi|87289944|gb|EAQ81833.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM
3645]
Length = 159
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 5/134 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGLP 76
IA ID GT RIG+AI+DP R A P R+ K+ + E L+ + E I F++GLP
Sbjct: 15 IAGIDFGTVRIGVAITDPDRILASPFENYTRRSLKIDRQYFEELAKL--ERIVLFVVGLP 72
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
++M+G+E + R F + R VP V++DER TT A+ L + ++++K+ +
Sbjct: 73 VHMSGNESGKSGEARKF-GQWLGRITGVPIVYYDERFTTSIAKDYLAGLGMTKQKKKAVI 131
Query: 137 DSIAAALILQEVLD 150
D +AA ++L L+
Sbjct: 132 DKLAAQILLTAYLE 145
>gi|157828326|ref|YP_001494568.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165933035|ref|YP_001649824.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Iowa]
gi|167012757|sp|A8GRN5|RUVX_RICRS RecName: Full=Putative Holliday junction resolvase
gi|189046103|sp|B0BX42|RUVX_RICRO RecName: Full=Putative Holliday junction resolvase
gi|157800807|gb|ABV76060.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165908122|gb|ABY72418.1| hypothetical cytosolic protein [Rickettsia rickettsii str. Iowa]
Length = 154
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 1/147 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+++ + L PN P+ +ID G+K++G+A+S+ A P + LL+ I
Sbjct: 6 LQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINTKIVITVLLNIIEK 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ IIGLP++M+G+ + + F + + + +P DERLTT +A +L
Sbjct: 66 YKVCGVIIGLPIDMSGAVTEQTNIVMKFAEEL-AKSINLPIYLQDERLTTKAANNLLKSF 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152
V RK R D++AA++IL+ VLD I
Sbjct: 125 GVKRKDRNNNDDAVAASMILETVLDSI 151
>gi|312864393|ref|ZP_07724626.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415]
gi|311100114|gb|EFQ58325.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415]
Length = 139
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 82/140 (58%), Gaps = 10/140 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLS-FITTENIAAFIIGLP 76
+ +D+G+K +G+AISDP A + + + + L + + F++GLP
Sbjct: 3 LMGLDIGSKTVGVAISDPLGFTAQGLEIIPINEAKEDFGFQRLGELVKQYKVEKFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
NMN + GPRV +++A+ + + D +P + DERLTTV A+++L++ +VSR KR
Sbjct: 63 KNMNNTSGPRVEASQAYGEKIAELFD----IPVDYQDERLTTVQAERMLVEQADVSRGKR 118
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ L+R+
Sbjct: 119 KKVIDKLAAQLILQNYLERM 138
>gi|257867380|ref|ZP_05647033.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257873711|ref|ZP_05653364.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257877460|ref|ZP_05657113.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257801436|gb|EEV30366.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257807875|gb|EEV36697.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257811626|gb|EEV40446.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 140
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G++ +G+A+SDP A + + + + L+ + E ++ F++GLP N
Sbjct: 2 GLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN + GPR ++ A+ I+++ +P V+ DERLTTV A+++L++ N SR KR + +D
Sbjct: 62 MNNTIGPRAEASMAY-GAAIEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRKKVID 120
Query: 138 SIAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 121 KLAAVMILQNYLD 133
>gi|323705257|ref|ZP_08116832.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535159|gb|EGB24935.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 140
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G K IG+A+SDP A + R+ + E+ I + ++G P NMN
Sbjct: 5 GLDVGDKTIGIAVSDPSGLIAQGIKTIRRESLDNDVFEIKKIIDAFKVEEIVVGFPKNMN 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSI 139
G+ G + FV + ++ +P + WDERLTTV A ++L++ ++ R KR + +D +
Sbjct: 65 GTIGAQGQKVINFVE-YLKEEIDLPIMLWDERLTTVEANRMLVENADMRRDKRKKVIDKL 123
Query: 140 AAALILQEVLD 150
AA +ILQ LD
Sbjct: 124 AATIILQGYLD 134
>gi|289550617|ref|YP_003471521.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis
HKU09-01]
gi|315658112|ref|ZP_07910984.1| crossover junction endodeoxyribonuclease [Staphylococcus
lugdunensis M23590]
gi|289180149|gb|ADC87394.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis
HKU09-01]
gi|315496441|gb|EFU84764.1| crossover junction endodeoxyribonuclease [Staphylococcus
lugdunensis M23590]
Length = 142
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 10/142 (7%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74
I +D+G+K +G+AISD A L + ++ + +E L + I + N+ +IG
Sbjct: 4 HKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQEEYGIEQLTNIIKSNNVDTIVIG 63
Query: 75 LPLNMNGSEGPR----VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
LP NMN S G R +H + M D KV + WDERL+T++A++ L++ +VSR+
Sbjct: 64 LPKNMNNSIGFRGEASIHYKELILEAMPDMKV----IMWDERLSTMAAERSLLEADVSRQ 119
Query: 131 KRIQKVDSIAAALILQEVLDRI 152
KR + +D +AA ILQ LD I
Sbjct: 120 KRKKVIDKMAAVFILQGYLDSI 141
>gi|304316717|ref|YP_003851862.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778219|gb|ADL68778.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 140
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 2/131 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G K IG+AISDP A + R + LE+ + ++G P NMN
Sbjct: 5 GLDVGDKTIGVAISDPSGLIAQGIKTIKRSNLDDDILEIKRIANSFKAEEIVVGFPKNMN 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSI 139
G+ G + FV ++ +++ +P + WDERLTTV A ++LI+ ++ R KR + +D +
Sbjct: 65 GTIGSQGQKVINFVE-VLKKEINLPIMLWDERLTTVEASRMLIEGADMRRDKRKKVIDKL 123
Query: 140 AAALILQEVLD 150
AA +ILQ LD
Sbjct: 124 AATIILQGYLD 134
>gi|154504518|ref|ZP_02041256.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149]
gi|153795000|gb|EDN77420.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149]
Length = 148
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D GTK +G+AISD A + RK K+ +T + + + ++G
Sbjct: 3 IMGLDYGTKTVGVAISDALGLTAQGIETIQRKEENKLRRTLARIEELVREYEVDTIVLGF 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MN G R + F M+ R+ + V WDERLTTV A++ LI+ V R+ R Q
Sbjct: 63 PKHMNNDVGERAKKSLEF-KEMLVRRTGLDVVMWDERLTTVEAERTLIESQVRRENRKQY 121
Query: 136 VDSIAAALILQEVLDRI 152
+D IAA ILQ LD I
Sbjct: 122 IDKIAAVFILQGYLDSI 138
>gi|209560223|ref|YP_002286695.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
NZ131]
gi|226695308|sp|B5XJ01|RUVX_STRPZ RecName: Full=Putative Holliday junction resolvase
gi|209541424|gb|ACI62000.1| Putative Holliday junction resolvase [Streptococcus pyogenes NZ131]
Length = 139
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
I +D+G+K +G+AISDP A + K+ + E L + + F+I
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVI 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN + GPRV ++ + + I+ +P + DERLTTV A+++LI+ ++SR KR
Sbjct: 60 GLPKNMNNTNGPRVDASITY-GSHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKR 118
Query: 133 IQKVDSIAAALILQEVLDR 151
+ +D +AA LILQ L+R
Sbjct: 119 KKVIDKLAAQLILQNYLNR 137
>gi|289523055|ref|ZP_06439909.1| putative Holliday junction resolvase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503598|gb|EFD24762.1| putative Holliday junction resolvase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 144
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 2/134 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I ++D+G+ RIG+AISDP FA FL + L LL I N+ +IGLP
Sbjct: 2 EHILALDIGSVRIGIAISDPLGIFAQGVGFLNAQGSWLEDLTLL--IRKHNVKKVVIGLP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ NG + + + ++ + F+ WDER TT AQ L D +S KK+ +V
Sbjct: 60 IRTNGKKDREADAISDLTDKLKEKFPDITFILWDERFTTTLAQNYLRDSGMSGKKKRNRV 119
Query: 137 DSIAAALILQEVLD 150
D IAA ++LQ LD
Sbjct: 120 DMIAATVLLQSYLD 133
>gi|327540307|gb|EGF26893.1| Resolvase, holliday junction-type, YqgF-like protein
[Rhodopirellula baltica WH47]
Length = 173
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 7/141 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+AS+D GT RIG+AI DP A P + + A + +E IAA+++GLP++
Sbjct: 18 LASVDYGTVRIGVAICDPDWILASPLEVHPVSTLEKDAQYFIDLAKSERIAAWVVGLPIH 77
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G E + +R F + +P +DER TTV+A + +RKK Q+VD+
Sbjct: 78 CDGGESDKSKESRKFA-AWLKETTGLPTRLFDERFTTVAANAKIRQGKTTRKKTKQRVDA 136
Query: 139 IAAALILQEVLDRISFLESSK 159
+AA ++L+ SFLE+ +
Sbjct: 137 VAAQVLLE------SFLEACR 151
>gi|70726304|ref|YP_253218.1| Holliday junction resolvase-like protein [Staphylococcus
haemolyticus JCSC1435]
gi|146291068|sp|Q4L6W3|RUVX_STAHJ RecName: Full=Putative Holliday junction resolvase
gi|68447028|dbj|BAE04612.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 142
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74
I +D+G+K +G+AISD A L + +++ +E L++ I N+ + +IG
Sbjct: 4 HKILGLDVGSKTVGVAISDLMGWTAQGLDTLRINEELEDYGIEQLVTIIKENNVGSVVIG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 64 LPKNMNNSIGFRGEASLRYKELLKESLPDIEIIMWDERLSTMAAERSLLEADVSRQKRKK 123
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA ILQ LD I
Sbjct: 124 VIDKMAAVFILQGYLDSI 141
>gi|110004986|emb|CAK99317.1| putative holliday junction resolvase yqgf protein [Spiroplasma
citri]
Length = 139
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G+K +GLA S + Q A L ITTE + I+G P NMN
Sbjct: 7 AVDVGSKTLGLATSQGLIATGYGVYRFPENDFLQAAQYLAGLITTEQFSDIIVGYPKNMN 66
Query: 81 GSEGPRVHSTRAFVH---NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ GPR FV+ ++D + + V DERLTT A QI+++ N+SR+KR QK D
Sbjct: 67 NTIGPRALMVSDFVNLLKQLLDPTITIHLV--DERLTTHQAHQIMLEANLSRQKRKQKKD 124
Query: 138 SIAAALILQEVLDR 151
S+AA LIL+ L +
Sbjct: 125 SLAAQLILETYLHQ 138
>gi|163849371|ref|YP_001637415.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl]
gi|222527368|ref|YP_002571839.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl]
gi|189046090|sp|A9WCR4|RUVX_CHLAA RecName: Full=Putative Holliday junction resolvase
gi|254767506|sp|B9LH40|RUVX_CHLSY RecName: Full=Putative Holliday junction resolvase
gi|163670660|gb|ABY37026.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl]
gi|222451247|gb|ACM55513.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl]
Length = 153
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q I ++D+G +RIG+AISD R A P + + +++ + ++ ++GL
Sbjct: 3 DQIILALDVGERRIGVAISDADARIAAPLTTINAHPPERAIAQIVRLVQERGVSRVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL M G GP+ + F + + + P +DERLT+V+A+Q+L ++ + K +
Sbjct: 63 PLTMRGERGPQAEVVQRFA-DTLSSALSCPVEMFDERLTSVAAEQMLRNLGLKPAKIKAQ 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA++ILQ+ LD
Sbjct: 122 IDQVAASIILQDYLD 136
>gi|239637577|ref|ZP_04678549.1| conserved hypothetical protein [Staphylococcus warneri L37603]
gi|239596795|gb|EEQ79320.1| conserved hypothetical protein [Staphylococcus warneri L37603]
Length = 142
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74
I +D+G+K +G+AISD A L + + + +E L+ I + +IG
Sbjct: 4 HKILGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIEQLVEIIKQHGVGTVVIG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 64 LPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAEKSLLEADVSRQKRKK 123
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA ILQ LD IS
Sbjct: 124 VIDKMAAVFILQGYLDSIS 142
>gi|254993596|ref|ZP_05275786.1| Holliday junction resolvase-like protein [Listeria monocytogenes
FSL J2-064]
Length = 124
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+ ++GLP NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +V
Sbjct: 40 VEKVVVGLPKNMNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADV 98
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
SRKKR + +D +AA +ILQ LD
Sbjct: 99 SRKKRKEVIDKLAAVMILQSYLD 121
>gi|219847050|ref|YP_002461483.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485]
gi|254767505|sp|B8GC73|RUVX_CHLAD RecName: Full=Putative Holliday junction resolvase
gi|219541309|gb|ACL23047.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485]
Length = 142
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
Q I +D+G +RIG+AISD R A P + + ++ + + ++GL
Sbjct: 3 EQTILGLDVGERRIGVAISDVEARIAAPLTTIPAHPPERAIAQIARLVAERGVRRVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL M G GP+ + + FV + + + P +DERLT+V+A+Q+L ++ V K ++
Sbjct: 63 PLTMRGEHGPQAAAIQRFV-DALAAVLNCPVEMFDERLTSVAAEQMLRNLGVKPAKIKEQ 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA++ILQ+ LD
Sbjct: 122 IDQVAASIILQDYLD 136
>gi|238916712|ref|YP_002930229.1| putative Holliday junction resolvase [Eubacterium eligens ATCC
27750]
gi|259495704|sp|C4Z578|RUVX_EUBE2 RecName: Full=Putative Holliday junction resolvase
gi|238872072|gb|ACR71782.1| putative Holliday junction resolvase [Eubacterium eligens ATCC
27750]
Length = 140
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+A+SDP A P + RK K+ +T + I+ ++ ++G
Sbjct: 3 IIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+ + G R + F ++R+ +P WDERLTTV A ++L + + R+ R
Sbjct: 63 PKNMDDTIGERAKACEEFAA-ALERRTGLPVTLWDERLTTVEADEVLEECGMRRENRKTV 121
Query: 136 VDSIAAALILQEVLDRISFLESSK 159
+D +AA IL+ ++ES +
Sbjct: 122 IDQLAAVFILR------GYMESKQ 139
>gi|118597218|sp|Q6MD02|RUVX_PARUW RecName: Full=Putative Holliday junction resolvase
Length = 150
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 9/144 (6%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITT------E 66
KP++ I ID G RIGLA SD + A P + KK QT ++LL I+
Sbjct: 6 KPSR-ILGIDFGMSRIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKC 64
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
I +IGLPL M+G G + F ++ + +P WDERLTTV A++ L +
Sbjct: 65 EIEEIVIGLPLMMSGRTGFLADEVKHFAQ-LLQQLTPIPIRLWDERLTTVQAERSLRESQ 123
Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
++RKKR + VD ++A++ILQ LD
Sbjct: 124 LTRKKRSKVVDIVSASIILQSYLD 147
>gi|295695754|ref|YP_003588992.1| Holliday junction resolvase YqgF [Bacillus tusciae DSM 2912]
gi|295411356|gb|ADG05848.1| Holliday junction resolvase YqgF [Bacillus tusciae DSM 2912]
Length = 157
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G RIG+A+SDP A L + I + ++GLP N
Sbjct: 4 ILGLDVGRVRIGVAVSDPLGLVAQGLEVLAVDDEESALARIEGLIAEWGVERVVVGLPRN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+ S G + T F + R V VP WDERLTTV A++ LID + R +R + VD
Sbjct: 64 MDASLGAQGRYTEEFAEKLRHR-VRVPVDLWDERLTTVVAEKTLIDAGLRRARRKKVVDQ 122
Query: 139 IAAALILQEVLD 150
+AA ++LQ LD
Sbjct: 123 VAATVLLQSYLD 134
>gi|94991373|ref|YP_599473.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10270]
gi|118597223|sp|Q1JEI0|RUVX_STRPD RecName: Full=Putative Holliday junction resolvase
gi|94544881|gb|ABF34929.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10270]
Length = 139
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
I +D+G+K +G+AISDP A + K+ + E L + + F+I
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEII---KIDEEKAEFGFTRLEELVKQYQVEQFVI 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN + PRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR
Sbjct: 60 GLPKNMNNTNSPRVDASITY-GNHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKR 118
Query: 133 IQKVDSIAAALILQEVLDR 151
+ +D +AA LILQ L+R
Sbjct: 119 KKVIDKLAAQLILQNYLNR 137
>gi|111224622|ref|YP_715416.1| Holliday junction resolvase-like protein [Frankia alni ACN14a]
gi|111152154|emb|CAJ63884.1| Conserved hypothetical protein. Putative Holliday junction
resolvase [Frankia alni ACN14a]
Length = 205
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
+D+G+ R+G+A SDPG A P L R K +E L+ + ++GLP M
Sbjct: 33 GVDVGSVRVGVAASDPGGVLAVPVTTLARDKRHNADIEQLVQIVRDRQAVEVVVGLPRQM 92
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G EG V R +V + +R VP F DERLTTV+A + + + V + R VD
Sbjct: 93 SGQEGRAVQLVRQYVEVLAERIAPVPVRFVDERLTTVAAHRRMAERGVRSRARRSLVDQE 152
Query: 140 AAALILQEVLD 150
AA ILQ LD
Sbjct: 153 AAVQILQHDLD 163
>gi|125972677|ref|YP_001036587.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC
27405]
gi|256004836|ref|ZP_05429810.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
2360]
gi|281416864|ref|ZP_06247884.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20]
gi|167012716|sp|A3DBR5|RUVX_CLOTH RecName: Full=Putative Holliday junction resolvase
gi|125712902|gb|ABN51394.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC
27405]
gi|255991146|gb|EEU01254.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
2360]
gi|281408266|gb|EFB38524.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20]
gi|316941087|gb|ADU75121.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
1313]
Length = 141
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
+ ID G RIG+AISDP A + + + L+ +S + E + I+G P
Sbjct: 3 VLGIDYGDSRIGIAISDPLGWTAQALETITWRSDVEVPLKRISELVEEYGVKTVIVGFPK 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+ G R T F+ + R + + WDERLTTV+A + + +M + + K+ VD
Sbjct: 63 NMDGTVGARGEKTIEFIDLLQQRIKDIEVIKWDERLTTVAANRTMYEMGIKKSKKKLVVD 122
Query: 138 SIAAALILQEVLD 150
IAA ILQ LD
Sbjct: 123 QIAAVYILQGYLD 135
>gi|32475183|ref|NP_868177.1| an endonuclease [Rhodopirellula baltica SH 1]
gi|62901008|sp|Q7UG74|RUVX_RHOBA RecName: Full=Putative Holliday junction resolvase
gi|32445724|emb|CAD78455.1| conserved hypothetical protein-putative an endonuclease
[Rhodopirellula baltica SH 1]
Length = 173
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 13/144 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP---RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+AS+D GT RIG+AI DP A P P +K Q ++L +E IAA+++GL
Sbjct: 18 LASVDYGTVRIGVAICDPDWILASPLEVHPVSTPEKDAQYFIDLAK---SERIAAWVVGL 74
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P++ +G E + +R F + +P +DER TTV+A + +RKK Q+
Sbjct: 75 PIHCDGGESDKSKESRKFA-AWLKETTGLPTRLFDERFTTVAANAKIRQGKTTRKKTKQR 133
Query: 136 VDSIAAALILQEVLDRISFLESSK 159
VD++AA ++L+ SFLE+ +
Sbjct: 134 VDAVAAQVLLE------SFLEACR 151
>gi|37520701|ref|NP_924078.1| Holliday junction resolvase-like protein [Gloeobacter violaceus PCC
7421]
gi|62901004|sp|Q7NLJ1|RUVX_GLOVI RecName: Full=Putative Holliday junction resolvase
gi|35211696|dbj|BAC89073.1| gll1132 [Gloeobacter violaceus PCC 7421]
Length = 156
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D+G+KRIG+A DP A +VR + + +I A +IGLP N
Sbjct: 6 VLGLDVGSKRIGVAGCDPTGLIASGLETIVRCNLGADLDAIRHWIERRRAQAVVIGLPRN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNGS GP+ H + F + R + VP + DERL+TV A + L ++ +R+K + +D
Sbjct: 66 MNGSLGPQAHRIQHFGQQLA-RVIDVPIDYVDERLSTVQAGRALQSVSATRRKAL--IDQ 122
Query: 139 IAAALILQEVLD 150
AAA+ILQ+ LD
Sbjct: 123 QAAAIILQQWLD 134
>gi|310658791|ref|YP_003936512.1| holliday junction resolvase [Clostridium sticklandii DSM 519]
gi|308825569|emb|CBH21607.1| putative Holliday junction resolvase [Clostridium sticklandii]
Length = 139
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G KRIG+A+SD A P L RK + E+ I E+I ++GLP N
Sbjct: 4 ILGLDIGDKRIGIAVSDLLGMMAQPLYTLTRKSTKEAINEIAEIIQKEDIKQVVVGLPKN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
M+ SEG + TR F ++++ + ++ DERLT+ A+Q L M +++ K + +D
Sbjct: 64 MDSSEGIQAKRTRDFSQLLLEKTNSNIEIIYCDERLTSKMARQSLSHMKLAKAKEKKLID 123
Query: 138 SIAAALILQEVLD 150
+ AA ILQ LD
Sbjct: 124 TAAAVHILQGYLD 136
>gi|223044086|ref|ZP_03614125.1| conserved hypothetical protein [Staphylococcus capitis SK14]
gi|314933782|ref|ZP_07841147.1| putative Holliday junction resolvase [Staphylococcus caprae C87]
gi|222442480|gb|EEE48586.1| conserved hypothetical protein [Staphylococcus capitis SK14]
gi|313653932|gb|EFS17689.1| putative Holliday junction resolvase [Staphylococcus caprae C87]
Length = 142
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISD A L R Q L EL+ I + +IGL
Sbjct: 6 IIGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQNELGIEELVDIIKKNQVGTVVIGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 65 PKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAERSLLEADVSRQKRKKV 124
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA ILQ LD I
Sbjct: 125 IDKMAAVFILQGYLDSI 141
>gi|325833474|ref|ZP_08165923.1| RNAse H domain protein, YqgF family [Eggerthella sp. HGA1]
gi|325485398|gb|EGC87867.1| RNAse H domain protein, YqgF family [Eggerthella sp. HGA1]
Length = 138
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G R+G+A+SDPG R A P L +V A + + GLP
Sbjct: 3 IMALDIGDTRVGVAVSDPGERVASPVAVLPASEVLNCAKPFQRVLEDWEPELLLCGLPYT 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M G+EGP+ R + D +P+ F DERL++ A++ L + ++ K K+D
Sbjct: 63 MAGAEGPQAARIRKVAKTISD-ACGIPYEFADERLSSQEAKRSLREKGMTEKAMRGKIDM 121
Query: 139 IAAALILQEVLD 150
IAA+L LQ LD
Sbjct: 122 IAASLFLQAWLD 133
>gi|73662454|ref|YP_301235.1| Holliday junction resolvase-like protein [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|146291069|sp|Q49Y54|RUVX_STAS1 RecName: Full=Putative Holliday junction resolvase
gi|72494969|dbj|BAE18290.1| putative endonuclease involved in recombination [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 142
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74
I +D+G+K +G+AISD A L + ++ + +E L+ I +N+ +IG
Sbjct: 4 HKIIGLDVGSKTVGIAISDLMGWTAQGLDTLRIDEENNELGIEALVKIIKRDNVGTVVIG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 64 LPKNMNNSIGFRGEASLQYKEQLQEALPSLEIIMWDERLSTMAAERSLLEADVSRQKRKK 123
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA ILQ LD +
Sbjct: 124 VIDKMAAVFILQGYLDSL 141
>gi|319400946|gb|EFV89165.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
Length = 142
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L R Q L +L+ I + +I
Sbjct: 4 HKILGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQDDLGIDQLVKIIKDNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + D + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQDSVPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSI 141
>gi|222151503|ref|YP_002560659.1| hypothetical protein MCCL_1256 [Macrococcus caseolyticus JCSC5402]
gi|222120628|dbj|BAH17963.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 139
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 2/132 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
+D+G+K IG+A+SD A L + + +E L I T N+ +IGLP N
Sbjct: 6 GLDVGSKTIGVALSDAMGWTAQGLTTLRIDEANEDYGIEALKEIIETNNVTTAVIGLPKN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GP ++ F + + + WDERL+TV A++ L++ +VSRKKR Q +D
Sbjct: 66 MNNTIGPSGEASLHFSEILKSACPELDIIMWDERLSTVGAERSLLEADVSRKKRKQVIDK 125
Query: 139 IAAALILQEVLD 150
+AA ILQ L+
Sbjct: 126 MAAVFILQGYLN 137
>gi|323341498|ref|ZP_08081739.1| crossover junction endodeoxyribonuclease [Lactobacillus ruminis
ATCC 25644]
gi|323091109|gb|EFZ33740.1| crossover junction endodeoxyribonuclease [Lactobacillus ruminis
ATCC 25644]
Length = 148
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
+D+G++ +G+A+SD A + + ++ +E + + ++ F++GLP N
Sbjct: 6 GLDVGSRTVGIAVSDELGWTAQGVEIIKINEEEAIFGIERVKELVEKYDVCGFVLGLPKN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN + GPR +++A+ +I+ +P F DERLTTV A+++L++ + SRKKR + +D
Sbjct: 66 MNNTLGPRAEASKAYGELLIE-TFGLPIDFQDERLTTVEAERMLVEQADASRKKRKKVID 124
Query: 138 SIAAALILQEVLD 150
+AA+LILQ LD
Sbjct: 125 KLAASLILQNYLD 137
>gi|312898887|ref|ZP_07758275.1| conserved hypothetical protein TIGR00250 [Megasphaera
micronuciformis F0359]
gi|310620049|gb|EFQ03621.1| conserved hypothetical protein TIGR00250 [Megasphaera
micronuciformis F0359]
Length = 138
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 66/132 (50%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G+K IG+A SD A L R+ + L L + + ++G P +
Sbjct: 3 ILGLDVGSKTIGVACSDALLLTAQAVGTLKRQSRRKDCLALADICKEKEVHRIVVGKPSH 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG + FV + V+WDERLTTV AQ+ L++ V R+KR VD+
Sbjct: 63 MNGDKSANTEKIEQFVEKLKKTVPQTEIVWWDERLTTVMAQRQLMEAGVRREKRKAVVDT 122
Query: 139 IAAALILQEVLD 150
IAA ILQ LD
Sbjct: 123 IAAVFILQNYLD 134
>gi|328957194|ref|YP_004374580.1| Holliday junction resolvase-like protein [Carnobacterium sp. 17-4]
gi|328673518|gb|AEB29564.1| Holliday junction resolvase-like protein [Carnobacterium sp. 17-4]
Length = 140
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 10/137 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
+D+G+K +G+A+SDP F + K+ +T E + I + +IGL
Sbjct: 5 GLDVGSKTVGVAVSDP---FGWTAQGIEIVKINETQEEYGIERIGELIKIHEVTKVVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134
P NMN S GPR ++ + +I +P + DERLTTV A+++LI+ N SR KR +
Sbjct: 62 PKNMNNSIGPRAEASLRYAE-LIKETFNLPVILQDERLTTVQAERMLIEEGNTSRAKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ L++
Sbjct: 121 VIDKVAAVMILQNYLNQ 137
>gi|291530568|emb|CBK96153.1| conserved hypothetical protein TIGR00250 [Eubacterium siraeum 70/3]
Length = 149
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL-PL 77
I ++D G GLA D + A P ++ ++ QT +E ++ E ++ P+
Sbjct: 3 IMAVDYGDAHTGLACCDRTQTLASP-IGVIDERNFQTCVEKVAAAAVEYEVGEVVVGNPI 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR R F +M+ + +P V WDER TTV+A ++ D+N K+R + +D
Sbjct: 62 NMNGTYGPRSEKCRMFA-DMLQNFLEIPVVMWDERSTTVTAHNMMNDVNKRGKERKKVID 120
Query: 138 SIAAALILQEVLD 150
++AAA+ILQ LD
Sbjct: 121 AVAAAVILQNYLD 133
>gi|167749575|ref|ZP_02421702.1| hypothetical protein EUBSIR_00533 [Eubacterium siraeum DSM 15702]
gi|167657429|gb|EDS01559.1| hypothetical protein EUBSIR_00533 [Eubacterium siraeum DSM 15702]
gi|291557838|emb|CBL34955.1| conserved hypothetical protein TIGR00250 [Eubacterium siraeum
V10Sc8a]
Length = 149
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL-PL 77
I ++D G GLA D + A P ++ ++ QT +E ++ E ++ P+
Sbjct: 3 IMAVDYGDAHTGLACCDRTQTLASP-IGVIDERNFQTCVEKVAAAAVEYEVGEVVVGNPI 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR R F +M+ + +P V WDER TTV+A ++ D+N K+R + +D
Sbjct: 62 NMNGTYGPRSEKCRMFA-DMLQNFLEIPVVMWDERSTTVTAHNMMNDVNKRGKERKKVID 120
Query: 138 SIAAALILQEVLD 150
++AAA+ILQ LD
Sbjct: 121 AVAAAVILQNYLD 133
>gi|242373916|ref|ZP_04819490.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis M23864:W1]
gi|242348470|gb|EES40072.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis M23864:W1]
Length = 142
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIGLP 76
I +D+G+K +G+AISD A L + ++ + +E L+ I + +IGLP
Sbjct: 6 IIGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQNELGIEKLVEIIQDNQVGTVVIGLP 65
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR + +
Sbjct: 66 KNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAERSLLEADVSRQKRKKVI 125
Query: 137 DSIAAALILQEVLDRI 152
D +AA ILQ LD I
Sbjct: 126 DKMAAVFILQGYLDSI 141
>gi|257792292|ref|YP_003182898.1| Holliday junction resolvase YqgF [Eggerthella lenta DSM 2243]
gi|317490213|ref|ZP_07948701.1| hypothetical protein HMPREF1023_02401 [Eggerthella sp. 1_3_56FAA]
gi|257476189|gb|ACV56509.1| Holliday junction resolvase YqgF [Eggerthella lenta DSM 2243]
gi|316910707|gb|EFV32328.1| hypothetical protein HMPREF1023_02401 [Eggerthella sp. 1_3_56FAA]
Length = 138
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G R+G+A+SDPG R A P L +V A + + GLP
Sbjct: 3 IMALDIGETRVGVAVSDPGERVASPVAVLPASEVLNCAKPFQRALEDWEPELLLCGLPYT 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M G+EGP+ R + D +P+ F DERL++ A++ L + ++ K K+D
Sbjct: 63 MAGAEGPQAARIRKAAKTISD-ACGIPYEFADERLSSQEAKRSLREKGMTEKAMRGKIDM 121
Query: 139 IAAALILQEVLD 150
IAA+L LQ LD
Sbjct: 122 IAASLFLQAWLD 133
>gi|260654149|ref|ZP_05859639.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33
E1]
gi|260631134|gb|EEX49328.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33
E1]
Length = 141
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPL 77
I ++DLGT RIG+A++DP FA L EL++ T+ + ++GLP
Sbjct: 4 IIALDLGTVRIGVAVTDPLGTFAQGVECWDAASGWMGKLGELMAQYGTDRL---LLGLPR 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G+EG R + R V FWDER T+ AQ +I+ ++SR+KR KVD
Sbjct: 61 KEDGTEGEMAAKVRETAGRIAKRYPQVQIRFWDERYTSRVAQSAMIEGDLSRRKRKGKVD 120
Query: 138 SIAAALILQEVLD 150
IAA+LILQ +D
Sbjct: 121 QIAASLILQNFID 133
>gi|332686781|ref|YP_004456555.1| putative holliday junction resolvase [Melissococcus plutonius ATCC
35311]
gi|332370790|dbj|BAK21746.1| putative holliday junction resolvase [Melissococcus plutonius ATCC
35311]
Length = 140
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 4/133 (3%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+A+SD G + ++ Q + L + E I F+IGLP N
Sbjct: 2 GLDVGSKTVGVAVSDLLGWTAQGIEIIRINEEKGQFGFDRLEELAEEYEITKFVIGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN S GPR ++ AF + +P V+ DERLTTV A+++LI+ + SR KR + +D
Sbjct: 62 MNNSIGPRAEASLAFGEKL-QELFQLPVVYQDERLTTVQAERMLIEQADTSRAKRKKVID 120
Query: 138 SIAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 121 KLAAVMILQNYLD 133
>gi|160931527|ref|ZP_02078922.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753]
gi|156869398|gb|EDO62770.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753]
Length = 139
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFIIGL 75
I IDLG R G+A+ D A P + R+++ + ++L + E IA +GL
Sbjct: 3 ILGIDLGKARTGVAVCDRAEMLASPLCVIQEHNRERLIEKIVKLSNERRAEQIA---LGL 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+GSEG + R F ++ K +P F DER TTV+A L +V KKR
Sbjct: 60 PKNMDGSEGESAQNAREF-GALLQEKTGLPVAFVDERGTTVTAHGYLNQTDVRGKKRKAV 118
Query: 136 VDSIAAALILQEVLD 150
VDS+AA +ILQ LD
Sbjct: 119 VDSVAAVIILQNYLD 133
>gi|157825581|ref|YP_001493301.1| Holliday junction resolvase-like protein [Rickettsia akari str.
Hartford]
gi|167012754|sp|A8GN18|RUVX_RICAH RecName: Full=Putative Holliday junction resolvase
gi|157799539|gb|ABV74793.1| Holliday junction resolvase-like protein [Rickettsia akari str.
Hartford]
Length = 154
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 77/139 (55%), Gaps = 5/139 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFII 73
N P+ +ID G+K++G+A+S+ R A P + + KK+ T+L LS + + +I
Sbjct: 16 NSPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSL--LSIVEKYKVCGVVI 73
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G+P++M+G+ + + F + + +P DERLTT +A L + RK R
Sbjct: 74 GMPIDMSGAVTEQTNMVMKFAEEFT-KSINLPIYLQDERLTTKAANNFLKSFGMKRKDRD 132
Query: 134 QKVDSIAAALILQEVLDRI 152
D++AA++IL+ VLD +
Sbjct: 133 NNDDAVAASMILETVLDSM 151
>gi|330684841|gb|EGG96531.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
VCU121]
Length = 142
Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74
I +D+G+K +G+AISD A L + + + + +L+ I + +IG
Sbjct: 4 HKILGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIDQLVDIIKKHGVGTVVIG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 64 LPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAEKSLLEADVSRQKRKK 123
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA ILQ LD IS
Sbjct: 124 VIDKMAAVFILQGYLDSIS 142
>gi|116494331|ref|YP_806065.1| Holliday junction resolvase-like protein [Lactobacillus casei ATCC
334]
gi|191637663|ref|YP_001986829.1| Holliday junction resolvase-like protein [Lactobacillus casei BL23]
gi|227534480|ref|ZP_03964529.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239629714|ref|ZP_04672745.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301065842|ref|YP_003787865.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang]
gi|122264241|sp|Q03AZ9|RUVX_LACC3 RecName: Full=Putative Holliday junction resolvase
gi|226731624|sp|B3WC70|RUVX_LACCB RecName: Full=Putative Holliday junction resolvase
gi|116104481|gb|ABJ69623.1| RNase H-like ribonuclease [Lactobacillus casei ATCC 334]
gi|190711965|emb|CAQ65971.1| Putative Holliday junction resolvase [Lactobacillus casei BL23]
gi|227187879|gb|EEI67946.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239528400|gb|EEQ67401.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300438249|gb|ADK18015.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang]
gi|327381721|gb|AEA53197.1| Putative Holliday junction resolvase [Lactobacillus casei LC2W]
gi|327384886|gb|AEA56360.1| Putative Holliday junction resolvase [Lactobacillus casei BD-II]
Length = 144
Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIGLP 76
+ +D+G++ +G+A+SDP A + + + Q + L + + AF++GLP
Sbjct: 3 LMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKEQFGIARLKELVKQYEVTAFVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQK 135
NMN S GPR ++A+ ++ +P F DERLTTV A ++LI + + SRK++ Q
Sbjct: 63 KNMNNSIGPRAEKSQAY-GELLKTTFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 122 IDKLAAQMILQNYLD 136
>gi|157803931|ref|YP_001492480.1| Holliday junction resolvase-like protein [Rickettsia canadensis
str. McKiel]
gi|167012756|sp|A8EZB2|RUVX_RICCK RecName: Full=Putative Holliday junction resolvase
gi|157785194|gb|ABV73695.1| Holliday junction resolvase-like protein [Rickettsia canadensis
str. McKiel]
Length = 154
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+++ + L PN + +ID G+K++G+A+S+ R A P + T +LS I
Sbjct: 6 LQEFYRLLIPNTQLIAIDYGSKKLGIAMSNGERSIAMPLNTITVVNKTAVINSVLSIIAK 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I +IGLP++M+G + + F + + +P DERLTT +A L
Sbjct: 66 YKICGVVIGLPIDMSGVVTQQTNIVMKFAEELA-KYTNLPIYLQDERLTTKAANNFLKSF 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152
V RK R D++AA++IL+ VLD I
Sbjct: 125 GVKRKDRNNNDDAVAASMILETVLDSI 151
>gi|153005395|ref|YP_001379720.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp.
Fw109-5]
gi|167012689|sp|A7HDE0|RUVX_ANADF RecName: Full=Putative Holliday junction resolvase
gi|152028968|gb|ABS26736.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. Fw109-5]
Length = 137
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+DLG RIGLA++D R A P +VR + + L ++ E + ++GLPLNM
Sbjct: 5 GLDLGRARIGLALADDVLRTARPLS-VVRHRTREADLASIAATLREWEVGTAVVGLPLNM 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GSEG RAF + R VP +DERL+T A+ L + S ++ +VD+
Sbjct: 64 DGSEGASARYARAFAEELA-RATGVPVELFDERLSTFEAESRLREQGFSARELRGRVDAE 122
Query: 140 AAALILQEVLD 150
AAA+ILQ LD
Sbjct: 123 AAAVILQGWLD 133
>gi|32130063|sp|Q9CJ63|RUVX_LACLA RecName: Full=Putative Holliday junction resolvase
Length = 143
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+GTK +G+++SD A P + + + E L + E ++GLP
Sbjct: 5 ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLP 64
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+MNG EG R ++R + + + + + + DERLTT A+++LID V RK+R + +
Sbjct: 65 KHMNGDEGIRAEASRDYGTKLAN-EFGLEVAYQDERLTTAQAEKVLIDGGVRRKERKKSI 123
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 124 DKLAAVLILQNYLD 137
>gi|270290966|ref|ZP_06197189.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|304385235|ref|ZP_07367580.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici
DSM 20284]
gi|270280362|gb|EFA26197.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|304328442|gb|EFL95663.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici
DSM 20284]
Length = 146
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
+ +D+G++ +G+A+SD A + + + + + + ++ +A F+IGLP
Sbjct: 3 LMGMDVGSRTVGIAVSDQLGWTAQGVEIIPINEDEGEFGISRVKELVSQYEVAGFVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN +EGPRV + R + ++ +P F DERLTTV A+++LI+ + SR KR +
Sbjct: 63 KNMNNTEGPRVEAARNY-GKLLTETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKKV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA+LIL+ L+
Sbjct: 122 IDKLAASLILENYLN 136
>gi|314936268|ref|ZP_07843615.1| putative Holliday junction resolvase [Staphylococcus hominis subsp.
hominis C80]
gi|313654887|gb|EFS18632.1| putative Holliday junction resolvase [Staphylococcus hominis subsp.
hominis C80]
Length = 142
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74
I +D+G++ +G+AISD A L + ++ + ++ L+S I N+ + +IG
Sbjct: 4 HKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEENEEFGIDRLVSIIKDNNVGSVVIG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 64 LPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKRKK 123
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA ILQ LD I
Sbjct: 124 VIDKMAAVFILQGYLDSI 141
>gi|229825002|ref|ZP_04451071.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC
49176]
gi|229790749|gb|EEP26863.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC
49176]
Length = 140
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +DLG+K G+A++D A + RK K+ QT + + ++G
Sbjct: 3 IMGLDLGSKTCGVAVTDGLGLTAQGLEVIRRKEENKLRQTLARITELTEEYKVEKIVLGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+GS R + F + R + + WDERLTTVSA +I+I+ + R++R +
Sbjct: 63 PKNMDGSVSKRCELSEEFAKKLTGR-TGIEVILWDERLTTVSAHEIMIEAGLKREEREKI 121
Query: 136 VDSIAAALILQEVLD 150
VD +AA IL++ ++
Sbjct: 122 VDKVAAVFILEDYMN 136
>gi|260589075|ref|ZP_05854988.1| putative holliday junction resolvase [Blautia hansenii DSM 20583]
gi|331082505|ref|ZP_08331630.1| Holliday junction resolvase [Lachnospiraceae bacterium 6_1_63FAA]
gi|260540495|gb|EEX21064.1| putative holliday junction resolvase [Blautia hansenii DSM 20583]
gi|330400483|gb|EGG80113.1| Holliday junction resolvase [Lachnospiraceae bacterium 6_1_63FAA]
Length = 144
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I +D G+K IG+AISDP A + R+ K+ ++ + ++ ++G
Sbjct: 3 IMGLDYGSKTIGVAISDPLGITAQGIEIIRREEENKLRKSLRRVEELAKEYEVSEIVLGF 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + G R + ++R++ +P V WDERLTTV A + L++ V R+ R +
Sbjct: 63 PKNMNNTIGERAEKSLQL-KEALERRLGLPVVMWDERLTTVEANRTLMETGVRRENRGKY 121
Query: 136 VDSIAAALILQEVLD 150
VD IAA ILQ LD
Sbjct: 122 VDMIAAVFILQGYLD 136
>gi|261337333|ref|ZP_05965217.1| putative Holliday junction resolvase [Bifidobacterium gallicum DSM
20093]
gi|270277707|gb|EFA23561.1| putative Holliday junction resolvase [Bifidobacterium gallicum DSM
20093]
Length = 156
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 71/144 (49%), Gaps = 13/144 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG RIG A+SDP FAHP + VR E+L+ I E + ++GLPL +
Sbjct: 5 GLDLGNARIGTALSDPQLTFAHPAGNITVRGNYGVEFDEVLAIIEDEQVDHVVVGLPLQL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY-----------VPFV-FWDERLTTVSAQQILIDMNV 127
+G+EG R +V +I R V +P V DERLTTV A + L D V
Sbjct: 65 DGTEGASARKARTWVRELIHRLVQEVADPRSGITTMPSVTLCDERLTTVDAHRRLHDAQV 124
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
+ VD +A ILQ LD+
Sbjct: 125 QGRNHRAMVDQQSAVEILQSALDQ 148
>gi|224542878|ref|ZP_03683417.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM
15897]
gi|224524208|gb|EEF93313.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM
15897]
Length = 140
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAH--PRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ I +DLG++ G+AISD AH + A + + + NI ++G
Sbjct: 2 EKILGLDLGSRTCGVAISDTLGMLAHGVETYHFSENAYKKCAYHIKNIVEENNIHTIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +MNG G R + F + ++ + V + DERLTTV A LI +VSRKKR Q
Sbjct: 62 LPKHMNGDLGERAQISIDFKERL-EKMMDVEVILEDERLTTVIATNNLIFGDVSRKKRKQ 120
Query: 135 KVDSIAAALILQEVLDRI 152
VD +AA ILQ LD+I
Sbjct: 121 VVDKMAAVEILQGYLDKI 138
>gi|228475168|ref|ZP_04059894.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|228270779|gb|EEK12181.1| conserved hypothetical protein [Staphylococcus hominis SK119]
Length = 142
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALE-LLSFITTENIAAFIIG 74
I +D+G++ +G+AISD A L + ++ + ++ L+S I N+ + +IG
Sbjct: 4 HKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEEDEEFGIDRLVSIIKDNNVGSVVIG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 64 LPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKRKK 123
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA ILQ LD I
Sbjct: 124 VIDKMAAVFILQGYLDSI 141
>gi|281490614|ref|YP_003352594.1| YqgF family resolvase [Lactococcus lactis subsp. lactis KF147]
gi|161702205|gb|ABX75666.1| Resolvase, YqgF family [Lactococcus lactis subsp. lactis KF147]
Length = 143
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+GTK +G+++SD A P + + + E L + E ++GLP
Sbjct: 5 ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLP 64
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+MNG EG R ++R + + + + + + DERLTT A+++LID V RK R + +
Sbjct: 65 KHMNGDEGVRAEASRDYGTKLAN-EFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSI 123
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 124 DKLAAVLILQNYLD 137
>gi|160915322|ref|ZP_02077535.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991]
gi|158433121|gb|EDP11410.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991]
Length = 137
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIGLP 76
+ +DLG++ +G+++SD A P + ++ +A ++ ++I I ++GLP
Sbjct: 3 VLGLDLGSRTLGVSVSDALGMIAQPVTTIRFEEEDYDSAFGQVQTYIKEYQIKTVVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+MNG G R + F + + V V WDERLTTV+AQ+ILI +VSRKKR + +
Sbjct: 63 KHMNGDVGIRGDISIMFKERL--ETLGVTVVLWDERLTTVAAQRILIAADVSRKKRKKVI 120
Query: 137 DSIAAALILQEVLD 150
D +AA ILQ LD
Sbjct: 121 DQMAAVQILQGYLD 134
>gi|188996418|ref|YP_001930669.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1]
gi|226695309|sp|B2V842|RUVX_SULSY RecName: Full=Putative Holliday junction resolvase
gi|188931485|gb|ACD66115.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1]
Length = 145
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 82/141 (58%), Gaps = 13/141 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G KRIG+A+SDP A P F++ +KV + +L I I+ +IGLPL
Sbjct: 4 ILGLDIGLKRIGVAVSDPFGVTATPLEFILNDEKVFEKINDL---IKNYKISKIVIGLPL 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRKKRI 133
+ G EG + T+ FV N+ K ++P +F DER T+ A++ L + +K +
Sbjct: 61 TLKGEEGEQARYTKEFVENL---KNHIPQDIEIIFVDERFTSSLAEKTL--LQTKKKNKK 115
Query: 134 QKVDSIAAALILQEVLDRISF 154
+K+DS++A ILQ LDR+SF
Sbjct: 116 EKIDSLSAVFILQTYLDRLSF 136
>gi|293400452|ref|ZP_06644597.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305478|gb|EFE46722.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 140
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLP 76
I +DLG++ +G+++SD A P + +AL ++ +I + ++GLP
Sbjct: 3 ILGLDLGSRTLGVSVSDALGMIARPVETIRFEQDDYDSALTQIKKYIDEFQVKKAVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+MNG G R + F + + V + WDERLTTV+A++ILI +VSRKKR + +
Sbjct: 63 KHMNGDVGIRGEISIMFKEKL--ETLGVEVILWDERLTTVAAERILISADVSRKKRKKVI 120
Query: 137 DSIAAALILQEVLDR 151
D +AA ILQ LDR
Sbjct: 121 DQMAAVQILQGYLDR 135
>gi|125623030|ref|YP_001031513.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
cremoris MG1363]
gi|167012732|sp|A2RHM2|RUVX_LACLM RecName: Full=Putative Holliday junction resolvase
gi|124491838|emb|CAL96758.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
cremoris MG1363]
gi|300069777|gb|ADJ59177.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 143
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+GTK +G+++SD A P + + + + L+ + E ++GLP
Sbjct: 5 ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGLP 64
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+MNG EG R ++R + + + K + + DERLTT A+++LID V RK R + +
Sbjct: 65 KHMNGDEGIRAEASRDYGTKLAN-KFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSI 123
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 124 DKLAAVLILQNYLD 137
>gi|261366579|ref|ZP_05979462.1| putative Holliday junction resolvase [Subdoligranulum variabile DSM
15176]
gi|282571398|gb|EFB76933.1| putative Holliday junction resolvase [Subdoligranulum variabile DSM
15176]
Length = 156
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D G R GLA D P P + K + + A + + GLP NM
Sbjct: 5 AVDYGDARTGLAGCDASETITSPITPQIEEKSMNKVAAAVTQVAVQRGAEGIVCGLPKNM 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+EG R +R F + + P V WDER TTVSA IL D + +KR ++DS+
Sbjct: 65 DGTEGSRAAKSRRFAQRLAN-TAGRPVVLWDERRTTVSATAILADNDTFGQKRKARLDSV 123
Query: 140 AAALILQEVLD 150
+AA+IL+ L+
Sbjct: 124 SAAVILESFLN 134
>gi|242242890|ref|ZP_04797335.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis W23144]
gi|242233665|gb|EES35977.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis W23144]
Length = 142
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L R Q L +L+ I + +I
Sbjct: 4 HKILGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQEDLGIDQLVKIIKDNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESVPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSI 141
>gi|239622021|ref|ZP_04665052.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296454024|ref|YP_003661167.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
longum JDM301]
gi|239515212|gb|EEQ55079.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296183455|gb|ADH00337.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
longum JDM301]
Length = 156
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R+GLA+SDP FAHP + V E+L+ I E++ I+GLPL M
Sbjct: 9 GVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQM 68
Query: 80 NGSEGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNV 127
+G+EG R + N+ R + +P V DERLTTVSA + L + +
Sbjct: 69 DGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHK 128
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
+ K VD +A +ILQ LDR
Sbjct: 129 ASNKHRPVVDQQSAVVILQTALDR 152
>gi|326405717|gb|ADZ62788.1| YqgF family resolvase [Lactococcus lactis subsp. lactis CV56]
Length = 143
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+GTK +G+++SD A P + + + E L + E ++GLP
Sbjct: 5 ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLP 64
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+MNG EG R ++R + + + + + + DERLTT A+++LID V RK R + +
Sbjct: 65 KHMNGDEGIRAEASRDYGTKLAN-EFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSI 123
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 124 DKLAAVLILQNYLD 137
>gi|213692472|ref|YP_002323058.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|254767498|sp|B7GSA0|RUVX_BIFLI RecName: Full=Putative Holliday junction resolvase
gi|213523933|gb|ACJ52680.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 151
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R+GLA+SDP FAHP + V E+L+ I E++ I+GLPL M
Sbjct: 5 GVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQM 64
Query: 80 NGSEGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNV 127
+G+EG R + N+ R + +P V DERLTTVSA + L + +
Sbjct: 65 DGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHK 124
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
+ K VD +A +ILQ LDR
Sbjct: 125 ASNKHRPVVDQQSAVVILQTALDR 148
>gi|189439478|ref|YP_001954559.1| putative endonuclease for recombination [Bifidobacterium longum
DJO10A]
gi|227545931|ref|ZP_03975980.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Bifidobacterium longum subsp. infantis ATCC 55813]
gi|312132885|ref|YP_004000224.1| endonuclease for recombination [Bifidobacterium longum subsp.
longum BBMN68]
gi|317482214|ref|ZP_07941236.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp.
12_1_47BFAA]
gi|32130036|sp|Q8G5X0|RUVX_BIFLO RecName: Full=Putative Holliday junction resolvase
gi|226725490|sp|B3DSE2|RUVX_BIFLD RecName: Full=Putative Holliday junction resolvase
gi|189427913|gb|ACD98061.1| Putative endonuclease for recombination [Bifidobacterium longum
DJO10A]
gi|227213565|gb|EEI81414.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Bifidobacterium longum subsp. infantis ATCC 55813]
gi|311773856|gb|ADQ03344.1| Putative endonuclease for recomBination [Bifidobacterium longum
subsp. longum BBMN68]
gi|316916352|gb|EFV37752.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp.
12_1_47BFAA]
Length = 152
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R+GLA+SDP FAHP + V E+L+ I E++ I+GLPL M
Sbjct: 5 GVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQM 64
Query: 80 NGSEGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNV 127
+G+EG R + N+ R + +P V DERLTTVSA + L + +
Sbjct: 65 DGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHK 124
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
+ K VD +A +ILQ LDR
Sbjct: 125 ASNKHRPVVDQQSAVVILQTALDR 148
>gi|257870135|ref|ZP_05649788.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|257804299|gb|EEV33121.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
Length = 140
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 77/133 (57%), Gaps = 4/133 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G++ +G+A+SDP A + + + + L + E + F++GLP N
Sbjct: 2 GLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDENDFGYDRLGELVKEYEVTRFVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN + GPR ++ A+ I+ + +P + DERLTTV A+++L++ N SR KR + +D
Sbjct: 62 MNNTIGPRAEASLAY-GKAIEERFDLPVDYQDERLTTVQAERMLVEQANTSRAKRKKVID 120
Query: 138 SIAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 121 KLAAVMILQNYLD 133
>gi|27468217|ref|NP_764854.1| hypothetical protein SE1299 [Staphylococcus epidermidis ATCC 12228]
gi|57867099|ref|YP_188756.1| hypothetical protein SERP1180 [Staphylococcus epidermidis RP62A]
gi|251811023|ref|ZP_04825496.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis BCM-HMP0060]
gi|282875958|ref|ZP_06284825.1| RNAse YqgF [Staphylococcus epidermidis SK135]
gi|293366426|ref|ZP_06613104.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|32130023|sp|Q8CSA9|RUVX_STAES RecName: Full=Putative Holliday junction resolvase
gi|62900904|sp|Q5HNT4|RUVX_STAEQ RecName: Full=Putative Holliday junction resolvase
gi|27315763|gb|AAO04898.1|AE016748_132 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637757|gb|AAW54545.1| conserved hypothetical protein TIGR00250 [Staphylococcus
epidermidis RP62A]
gi|251805441|gb|EES58098.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis BCM-HMP0060]
gi|281294983|gb|EFA87510.1| RNAse YqgF [Staphylococcus epidermidis SK135]
gi|291319460|gb|EFE59828.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329735297|gb|EGG71589.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
VCU045]
gi|329737275|gb|EGG73529.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
VCU028]
Length = 142
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L R Q L +L+ I + +I
Sbjct: 4 HKILGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQDDLGIDQLVKIIKDNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESIPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSI 141
>gi|69245163|ref|ZP_00603287.1| Conserved hypothetical protein 250 [Enterococcus faecium DO]
gi|257879617|ref|ZP_05659270.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257883923|ref|ZP_05663576.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257890284|ref|ZP_05669937.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|258616772|ref|ZP_05714542.1| Holliday junction resolvase-like protein [Enterococcus faecium DO]
gi|260559720|ref|ZP_05831900.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|261208764|ref|ZP_05923201.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289565552|ref|ZP_06445999.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|293560123|ref|ZP_06676627.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|294614420|ref|ZP_06694336.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636]
gi|294617987|ref|ZP_06697592.1| conserved hypothetical protein [Enterococcus faecium E1679]
gi|314939503|ref|ZP_07846735.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a04]
gi|314944177|ref|ZP_07850822.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133C]
gi|314949753|ref|ZP_07853063.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0082]
gi|314951904|ref|ZP_07854936.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133A]
gi|314994470|ref|ZP_07859749.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133B]
gi|314997874|ref|ZP_07862775.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a01]
gi|68196006|gb|EAN10439.1| Conserved hypothetical protein 250 [Enterococcus faecium DO]
gi|257813845|gb|EEV42603.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257819761|gb|EEV46909.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257826644|gb|EEV53270.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|260074388|gb|EEW62710.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|260077266|gb|EEW64986.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289162634|gb|EFD10487.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|291592728|gb|EFF24321.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636]
gi|291595796|gb|EFF27084.1| conserved hypothetical protein [Enterococcus faecium E1679]
gi|291605990|gb|EFF35420.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|313588099|gb|EFR66944.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a01]
gi|313591125|gb|EFR69970.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133B]
gi|313595938|gb|EFR74783.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133A]
gi|313597239|gb|EFR76084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133C]
gi|313641204|gb|EFS05784.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a04]
gi|313643826|gb|EFS08406.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0082]
Length = 143
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 10/138 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
+ +D+G+K +G+AISDP F + ++ + E L + + F++
Sbjct: 3 VMGLDVGSKTVGVAISDP---FGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVV 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR
Sbjct: 60 GLPKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKR 118
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA +ILQ LD
Sbjct: 119 KKVIDKLAAVMILQNYLD 136
>gi|86741899|ref|YP_482299.1| Holliday junction resolvase-like protein [Frankia sp. CcI3]
gi|124107440|sp|Q2J822|RUVX_FRASC RecName: Full=Putative Holliday junction resolvase
gi|86568761|gb|ABD12570.1| Holliday junction resolvase YqgF [Frankia sp. CcI3]
Length = 202
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
+D+G+ R+G+A SDPG A P L R + ++ L I E A ++GLP M
Sbjct: 28 GVDVGSVRVGVAASDPGGVLAVPVTTLARDRRGNADIDQLVLIVRERQAVEVVVGLPRQM 87
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G EG V R + + +R VP F DERLTTV+A + + + V + R VD
Sbjct: 88 SGQEGRAVRLVRQYAEVLAERIAPVPVRFVDERLTTVAAHRRMAERGVRSRARRSLVDQE 147
Query: 140 AAALILQEVLD 150
AA ILQ LD
Sbjct: 148 AAVQILQHDLD 158
>gi|85858514|ref|YP_460716.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB]
gi|146325615|sp|Q2LR42|RUVX_SYNAS RecName: Full=Putative Holliday junction resolvase
gi|85721605|gb|ABC76548.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB]
Length = 150
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D G KRIG+A+ D A ++RK + S + T ++ +IG PL
Sbjct: 3 ILGLDYGEKRIGVALCDELGLTAQALTTVIRKSWRNDVGIIASLVRTYDVEKIVIGYPLR 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G+EG + F + + + +P + WDE LTT A++IL V +KR VD
Sbjct: 63 LDGTEGIQCEKVVRFARRL-EAALGIPVIRWDETLTTKEAEEILSRSGVPPRKRRGVVDR 121
Query: 139 IAAALILQEVLDRIS 153
+AA+LILQ LD IS
Sbjct: 122 LAASLILQSYLDAIS 136
>gi|291456670|ref|ZP_06596060.1| putative Holliday junction resolvase [Bifidobacterium breve DSM
20213]
gi|291381947|gb|EFE89465.1| putative Holliday junction resolvase [Bifidobacterium breve DSM
20213]
Length = 150
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R+GLA+SDP FAHP + V E+L+ + E++ I+GLPL M
Sbjct: 5 GVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVVEDEHVTHIIVGLPLQM 64
Query: 80 NGSEGPRVHSTRAFVHNMIDR---------KVYVP-FVFWDERLTTVSAQQILIDMNVSR 129
+G+EG R + N+ R + +P V DERLTTVSA + L + +
Sbjct: 65 DGTEGKSAKKARRWAVNLEKRLRSEREESQEPQIPQVVLVDERLTTVSAHRQLFEAQKAS 124
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
K VD +A +ILQ LDR
Sbjct: 125 TKHRPMVDQQSAVVILQTALDR 146
>gi|121535968|ref|ZP_01667762.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1]
gi|121305460|gb|EAX46408.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1]
Length = 140
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G K IG A+SD A + R + I+GLP N
Sbjct: 3 ILALDVGEKTIGAAVSDELLLTAQGVEVIRRMSPEADMARIRELAEHFEATVIIVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ GP+ +AF + + + WDERL+TV+A++ LI +V R KR Q +D
Sbjct: 63 MNGTIGPQGEKVKAFASELQNYLAGIEVRLWDERLSTVAAERSLIAADVRRAKRRQVIDK 122
Query: 139 IAAALILQEVLDRIS 153
+AA ILQ LD +S
Sbjct: 123 MAAVFILQGYLDSLS 137
>gi|332975378|gb|EGK12272.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Desmospora sp. 8437]
Length = 141
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 8/142 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +DLG KR+G+A+SDP A L R+ L I + A ++GLP N
Sbjct: 4 IMGLDLGEKRVGVAVSDPMGWTAQGVDVL-RRDQPDWMDRLARLIEDYEVEALVVGLPRN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS G + + R + +R +P WDERL+TV+ ++ LID ++SR+KR + VD
Sbjct: 63 MDGSIGAKGEACRQLGRELEER-FQIPVELWDERLSTVAVERTLIDADLSRRKRRKVVDR 121
Query: 139 IAAALILQEVLDRISFLESSKG 160
+AA+ ILQ +LE+ +G
Sbjct: 122 MAASWILQ------GYLEARRG 137
>gi|282882848|ref|ZP_06291453.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis
315-B]
gi|300814171|ref|ZP_07094454.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|281297259|gb|EFA89750.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis
315-B]
gi|300511828|gb|EFK39045.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 147
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D+G K IG+AISD A P + R + ++ I ++ ++GLP N
Sbjct: 4 VLGLDVGEKWIGVAISDETFTIATPLETIERTSNKEAYDKIHDLIEKYDVKKIVVGLPKN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GP + F + + K + V+ DER+TT+ A+ +L++ +V R+ R + VD
Sbjct: 64 MNNTLGPTCQMVQKFSEKLKN-KFRLELVYVDERMTTLMAKDVLMEASVRRENRKKYVDK 122
Query: 139 IAAALILQEVLDRISFLESSKG 160
IAAA IL+ ++++SS G
Sbjct: 123 IAAAFILK------TYMDSSDG 138
>gi|328954563|ref|YP_004371897.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109]
gi|328454887|gb|AEB10716.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109]
Length = 144
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +DLG+KRIG+A+SD A + R + +L + + +IGLP +
Sbjct: 3 ILGLDLGSKRIGIALSDALGWTAQGLTVIHRAGRARDLARVLELVKKYEVQEIVIGLPRH 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G G A+ + + +++P WDERLTT+ A+++L+ ++SR+KR Q +D
Sbjct: 63 LDGRLGEGAEEALAWAAELRE-HLHIPVHTWDERLTTLQAERVLLQADLSRRKRRQVIDK 121
Query: 139 IAAALILQEVLD 150
+AA LILQ LD
Sbjct: 122 LAAGLILQAFLD 133
>gi|227552124|ref|ZP_03982173.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
TX1330]
gi|257882634|ref|ZP_05662287.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257886706|ref|ZP_05666359.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257894866|ref|ZP_05674519.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|257895281|ref|ZP_05674934.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257897895|ref|ZP_05677548.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|293553141|ref|ZP_06673779.1| conserved hypothetical protein [Enterococcus faecium E1039]
gi|293568771|ref|ZP_06680085.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|293571039|ref|ZP_06682081.1| conserved hypothetical protein [Enterococcus faecium E980]
gi|227178706|gb|EEI59678.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
TX1330]
gi|257818292|gb|EEV45620.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257822760|gb|EEV49692.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257831245|gb|EEV57852.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|257831846|gb|EEV58267.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257835807|gb|EEV60881.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|291588488|gb|EFF20322.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|291602732|gb|EFF32946.1| conserved hypothetical protein [Enterococcus faecium E1039]
gi|291608879|gb|EFF38159.1| conserved hypothetical protein [Enterococcus faecium E980]
Length = 143
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 10/138 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
+ +D+G+K +G+A+SDP F + ++ + E L + + F++
Sbjct: 3 VMGLDVGSKTVGVAVSDP---FGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVV 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR
Sbjct: 60 GLPKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKR 118
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA +ILQ LD
Sbjct: 119 KKVIDKLAAVMILQNYLD 136
>gi|262198569|ref|YP_003269778.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365]
gi|262081916|gb|ACY17885.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365]
Length = 139
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G K IG+A SD AHP + R+ + + ++ ++GLPL ++
Sbjct: 6 GLDVGMKTIGVAGSDELGLAAHPVETIARRGTGPDVARVCALVSEREATDVVVGLPLELS 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
G EG R R + + + +P WDER +T + +++LI+ ++SR+KR Q +
Sbjct: 66 GQEGRRARRVRVLIDAL---RAALPDEVAVHTWDERFSTAAVERVLIEADMSRRKRKQVI 122
Query: 137 DSIAAALILQEVLD 150
D AAA ILQ LD
Sbjct: 123 DKQAAAYILQGWLD 136
>gi|163790356|ref|ZP_02184788.1| Holliday junction resolvase-like protein [Carnobacterium sp. AT7]
gi|159874427|gb|EDP68499.1| Holliday junction resolvase-like protein [Carnobacterium sp. AT7]
Length = 140
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 10/137 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
+D+G+K +G+A+SDP F + K+ + E + I + +IGL
Sbjct: 5 GLDVGSKTVGVAVSDP---FGWTAQGIEIVKINEAQEEYGIDRIGELIAIHEVTKVVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQ 134
P NMN S GPR ++ + ++ +P + DERLTTV A+++LI+ N SR KR +
Sbjct: 62 PKNMNNSIGPRAEASLRYAE-LVKETFGLPVILQDERLTTVQAERMLIEEGNTSRAKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ L++
Sbjct: 121 VIDKVAAVMILQNYLNQ 137
>gi|47097199|ref|ZP_00234763.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
str. 1/2a F6854]
gi|47014413|gb|EAL05382.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
str. 1/2a F6854]
Length = 117
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G+K +G+AISDP G + + Q + + + E + ++GLP
Sbjct: 3 IMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR
Sbjct: 63 KNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 117
>gi|225351925|ref|ZP_03742948.1| hypothetical protein BIFPSEUDO_03529 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157172|gb|EEG70511.1| hypothetical protein BIFPSEUDO_03529 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 157
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 13/144 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
IDLG R+GLA+SDPG AHP + + AL E++ I E++ ++GLPL +
Sbjct: 5 GIDLGDARVGLALSDPGITLAHPAGNIQVYGDSFRALDEVVDVIEDESVDHVVVGLPLLL 64
Query: 80 NGSEGPRVHSTRAFVHNM-------IDRKVY----VPFV-FWDERLTTVSAQQILIDMNV 127
+G EG R + N+ +D + Y VP + DERLTTV+A L D V
Sbjct: 65 SGEEGKSAKKARRWTVNLEKRLRVAVDDENYALKEVPSIELVDERLTTVTAHHQLFDAQV 124
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
+K VD +A +ILQ +DR
Sbjct: 125 GGRKHRPMVDQQSAVVILQTAIDR 148
>gi|304440513|ref|ZP_07400400.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304370991|gb|EFM24610.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 141
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G K IG++ISD A + R + E+ + NI ++G+P+NM+
Sbjct: 6 GLDVGDKYIGVSISDTTCTIASNLVTIRRTSNDKAYEEIEGILNDYNIGTVVVGVPINMD 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS+ R F + K V +F DER T++ A++ LI NV R+ R + +D +A
Sbjct: 66 GSDTVMSKRIRKFARKLTP-KFGVEVIFQDERFTSIEAERTLIQSNVRRENRKKYIDQLA 124
Query: 141 AALILQEVLDRIS 153
A++ILQ +DR++
Sbjct: 125 ASIILQTYIDRMN 137
>gi|309775358|ref|ZP_07670363.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
3_1_53]
gi|308916875|gb|EFP62610.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
3_1_53]
Length = 137
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +DLG+K +G+++SD A P A E + +I + ++GLP
Sbjct: 3 ILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYDAAFEQVQKYIKEFQVTTAVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+MNG G R + F + + + V WDERLTTV+A++ILI +VSRKKR + +
Sbjct: 63 KHMNGDVGIRGEISVMFKEKL--ETLGLEVVLWDERLTTVAAEKILISADVSRKKRKKII 120
Query: 137 DSIAAALILQEVLD 150
D +AA ILQ LD
Sbjct: 121 DQMAAVQILQSYLD 134
>gi|116510965|ref|YP_808181.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11]
gi|123125957|sp|Q032W3|RUVX_LACLS RecName: Full=Putative Holliday junction resolvase
gi|116106619|gb|ABJ71759.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11]
Length = 143
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+GTK +G+++SD A P + + + + L+ + E ++GLP
Sbjct: 5 ILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGLP 64
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+MNG EG R ++R + + + + + + DERLTT A+++LID V RK R + +
Sbjct: 65 KHMNGDEGIRAEASRDYGTKLAN-EFSLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSI 123
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 124 DKLAAVLILQNYLD 137
>gi|84496691|ref|ZP_00995545.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649]
gi|84383459|gb|EAP99340.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649]
Length = 161
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENIAAFIIGLP 76
+D+GT R+G+A+SDP A P L R + E+++ I+GLP
Sbjct: 1 MDVGTVRVGVAVSDPSGMLATPHATLTRIWPDAETPGDDIAEIVALSAERAALEVIVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+++G EGP + R + + R V DERLT+VSA + L D V+ +++ V
Sbjct: 61 RSLSGDEGPSAEAARKYAAELARRVAPVGVRLVDERLTSVSAHRALRDSGVAGRRQRAVV 120
Query: 137 DSIAAALILQEVLD 150
D AA LILQ LD
Sbjct: 121 DQAAAVLILQAALD 134
>gi|116493009|ref|YP_804744.1| Holliday junction resolvase-like protein [Pediococcus pentosaceus
ATCC 25745]
gi|122265527|sp|Q03ES0|RUVX_PEDPA RecName: Full=Putative Holliday junction resolvase
gi|116103159|gb|ABJ68302.1| RNase H-like ribonuclease [Pediococcus pentosaceus ATCC 25745]
Length = 146
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
+ +D+G++ +G+++SD A + + + +E + + E ++ F++GLP
Sbjct: 3 LMGMDVGSRTVGISVSDQLGWTAQGVEIVPINEDEEIFGIERVKELVKEYDVVGFVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN +EGPRV + R + +++ +P F DERLTTV A+++LI+ + SR KR +
Sbjct: 63 KNMNNTEGPRVEAARNY-GKLLEETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKKV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA+LIL+ L+
Sbjct: 122 IDKLAASLILENYLN 136
>gi|225017619|ref|ZP_03706811.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum
DSM 5476]
gi|224949584|gb|EEG30793.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum
DSM 5476]
Length = 145
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G R GLA+ D A P + + + ++ ++G P N
Sbjct: 3 IMAVDFGDARTGLAVCDRTEFLASPIGTIQERDFNMAVCKTAVAAKEYDVKMVVVGYPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS G R F + + + +P WDER TTVSA Q L ++NV +KR + VD
Sbjct: 63 MDGSCGERAKKCEEFAKRLGEM-IPLPIKLWDERQTTVSAHQFLNEVNVRGQKRKEVVDE 121
Query: 139 IAAALILQEVLD 150
+AA +IL+ L+
Sbjct: 122 VAATIILESYLE 133
>gi|313897358|ref|ZP_07830901.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2]
gi|312957728|gb|EFR39353.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2]
Length = 137
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLP 76
I +DLG+K +G+++SD A P + ++ +I + ++GLP
Sbjct: 3 ILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYEAACKQVQPYIKEFQVKTAVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+MNG G R + F + + + V WDERLTTV+A++ILI +VSRKKR + +
Sbjct: 63 KHMNGDVGIRGEISLMFKEKL--EALGLEVVLWDERLTTVAAEKILISADVSRKKRKKII 120
Query: 137 DSIAAALILQEVLD 150
D +AA ILQ LD
Sbjct: 121 DQMAAVQILQSYLD 134
>gi|289547922|ref|YP_003472910.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484]
gi|289181539|gb|ADC88783.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484]
Length = 133
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ID GTK +GLA+ D + A P +P R KV + EL + ++ ++GLPL
Sbjct: 3 VLCIDWGTKSLGLALGDTNLKLATPLKPIPNRGKVLERIAEL---VKEYDVRLVVVGLPL 59
Query: 78 NMNGSEGPRVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+G EG R R+FV + +V WDER TT A Q+L SRKK +
Sbjct: 60 TPSGREGQRASQVRSFVEELSALLPEHVGVELWDERYTTYEAVQLL--EGKSRKKVKELK 117
Query: 137 DSIAAALILQEVLDRI 152
DS++A +ILQE LD +
Sbjct: 118 DSVSALIILQEYLDSL 133
>gi|255026681|ref|ZP_05298667.1| Holliday junction resolvase-like protein [Listeria monocytogenes
FSL J2-003]
Length = 114
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+AISDP G + + Q + + + E + ++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
MN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR
Sbjct: 62 MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 114
>gi|255028975|ref|ZP_05300926.1| Holliday junction resolvase-like protein [Listeria monocytogenes
LO28]
Length = 116
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+AISDP G + + Q + + + E + ++GLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
MN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR
Sbjct: 62 MNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 114
>gi|320109161|ref|YP_004184751.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4]
gi|319927682|gb|ADV84757.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4]
Length = 157
Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 7/143 (4%)
Query: 14 KPNQP------IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
+P QP I +D+G +RIG+AISD A P L R + +
Sbjct: 3 QPPQPVMNLARIMGLDIGDRRIGVAISDGLGLTAQPVFTLHRSNPREDIRSIARLTRKHE 62
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
A + GLPL+M+G P+ ++AF + R +P FWDERLT+ +A +IL
Sbjct: 63 ATAIVAGLPLHMSGDLSPQAQKSQAFAQELAKR-TGLPLYFWDERLTSHAAHEILDVSGF 121
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
R +D +AA LILQ LD
Sbjct: 122 GTTGRKAVIDQVAAVLILQGFLD 144
>gi|294790798|ref|ZP_06755956.1| putative Holliday junction resolvase [Scardovia inopinata F0304]
gi|294458695|gb|EFG27048.1| putative Holliday junction resolvase [Scardovia inopinata F0304]
Length = 166
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
+DLG RIGLA+SDP FAHP + A++ ++ I ++ ++G PLN+
Sbjct: 9 GLDLGNARIGLALSDPELTFAHPEGVIQAGGDYFYAIDQIVDVIEDREVSHIVLGYPLNL 68
Query: 80 NGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+G+EG R F + R + DER+TTVSA +L+ +S ++
Sbjct: 69 DGAEGKSAKKVRRFAQALSRRLEEAGIDSQIELTDERMTTVSAHDLLLQAGMSSRQHRAV 128
Query: 136 VDSIAAALILQEVLD 150
VD+ +A +ILQ LD
Sbjct: 129 VDTQSAVVILQSALD 143
>gi|293378151|ref|ZP_06624320.1| RNAse YqgF [Enterococcus faecium PC4.1]
gi|292643015|gb|EFF61156.1| RNAse YqgF [Enterococcus faecium PC4.1]
Length = 143
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 10/138 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
+ +D+G+K +G+A+SDP F + ++ + E L + + F++
Sbjct: 3 VMGLDVGSKTVGVAVSDP---FGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVV 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN S GPR ++ + I +P + DERLTTV A+++L++ N SR KR
Sbjct: 60 GLPKNMNNSIGPRAEASMLYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKR 118
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA +ILQ LD
Sbjct: 119 KKVIDKLAAVMILQNYLD 136
>gi|327398201|ref|YP_004339070.1| Holliday junction resolvase [Hippea maritima DSM 10411]
gi|327180830|gb|AEA33011.1| Holliday junction resolvase [Hippea maritima DSM 10411]
Length = 136
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPL 77
I ID GTK+IG+AISD A P + L+ + I +N I ++G+P+
Sbjct: 3 ILGIDYGTKKIGIAISDETNTIALPHGVI---DTDGEYLDKIKEIVKKNKITRIVVGMPI 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV- 136
+ G +G R T F++ + + + V WDERL+T +++IL NV +K +KV
Sbjct: 60 TLKGEKGKRALETEDFINELACKIENIEIVEWDERLSTRFSERILNKANVKGRKNKKKVI 119
Query: 137 DSIAAALILQEVLD 150
D IAA ILQ LD
Sbjct: 120 DKIAATFILQGYLD 133
>gi|257462580|ref|ZP_05626990.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
D12]
gi|317060232|ref|ZP_07924717.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D12]
gi|313685908|gb|EFS22743.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D12]
Length = 139
Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A SDP A P + R+K + ++ EN + ++G+P +++
Sbjct: 7 ALDVGDVRIGVAKSDPLGMLAIPLETIDRRK-EKPVKRIMQLCEEENTKSIVVGIPKSLD 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137
GSE + R F+H + V + DER TTV+A +IL +MN RK ++K VD
Sbjct: 66 GSEKRQAEKVRIFIHALKSAIPGVEILEVDERFTTVTADRILTEMN--RKGALEKRKVVD 123
Query: 138 SIAAALILQEVLD 150
+AA+LILQ+ L+
Sbjct: 124 KVAASLILQQYLN 136
>gi|240047431|ref|YP_002960819.1| putative Holliday junction resolvase [Mycoplasma conjunctivae
HRC/581]
gi|239985003|emb|CAT04996.1| Putative Holliday junction resolvase [Mycoplasma conjunctivae]
Length = 141
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLP 76
I ++DLGTK G AI+DP A K + Q L++ I ++G P
Sbjct: 7 ILALDLGTKTCGFAITDPLAIIAQSLENFTYKNGDLNQIVLKIRDLQKQYEIGKIVLGYP 66
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L MNG++ P + +++ + +P V DERL+T A ILI NVSRKKR + +
Sbjct: 67 LYMNGNKAPHTLLVEK-MSSILKQNFQIPVVLQDERLSTSQAHDILILANVSRKKRKKVI 125
Query: 137 DSIAAALILQEVL 149
D +AA +IL+ L
Sbjct: 126 DKLAAQIILERYL 138
>gi|221195852|ref|ZP_03568905.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
gi|221184326|gb|EEE16720.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
Length = 140
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G R+G+A+SDP R A P L ++V A S + + G PL
Sbjct: 3 VLALDIGDARVGIAVSDPDGRIASPVCVLPAQEVFSHARSFRSVLEDWEPELLVCGKPLT 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G EGP+ + DR +P DERL++ A++IL +S K KVD
Sbjct: 63 LSGEEGPQAQKIMEQAKKIADR-TGLPVELTDERLSSSEAKRILRAQGLSEKTMRGKVDM 121
Query: 139 IAAALILQEVLDR 151
+AA+L LQ LDR
Sbjct: 122 VAASLFLQAWLDR 134
>gi|119025719|ref|YP_909564.1| putative Holliday junction resolvase [Bifidobacterium adolescentis
ATCC 15703]
gi|154487460|ref|ZP_02028867.1| hypothetical protein BIFADO_01313 [Bifidobacterium adolescentis
L2-32]
gi|167012696|sp|A1A199|RUVX_BIFAA RecName: Full=Putative Holliday junction resolvase
gi|118765303|dbj|BAF39482.1| putative Holliday junction resolvase [Bifidobacterium adolescentis
ATCC 15703]
gi|154083978|gb|EDN83023.1| hypothetical protein BIFADO_01313 [Bifidobacterium adolescentis
L2-32]
Length = 151
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
IDLG R+GLA+SDP AHP + + AL E++ I E++ +IGLPL +
Sbjct: 5 GIDLGDARVGLALSDPELTLAHPIGNIQVYGDSFRALDEVIDVIGDESVDHVVIGLPLLL 64
Query: 80 NGSEGPRVHSTRAF-------VHNMIDRKVY----VPFV-FWDERLTTVSAQQILIDMNV 127
NG EG R + +H ++ + Y VP + DERLTTV+A L D +
Sbjct: 65 NGEEGKSAKKARRWSVNLEKRLHAAVEDESYSVTRVPTIELVDERLTTVTAHHQLFDARI 124
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
+K VD +A +ILQ LDR
Sbjct: 125 GGRKHRPMVDQQSAVVILQTALDR 148
>gi|268316439|ref|YP_003290158.1| Holliday junction resolvase YqgF [Rhodothermus marinus DSM 4252]
gi|262333973|gb|ACY47770.1| Holliday junction resolvase YqgF [Rhodothermus marinus DSM 4252]
Length = 145
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENIAAFIIGLPL 77
+ ++D GT+R+GLA++DP R A P + AL++L + E I +IG PL
Sbjct: 5 VVAVDYGTRRVGLALADPLRVIAQP----YGTYAPEAALQVLQRLHAEEGIETLVIGWPL 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
G+EG F+ + V V WDER T+ A++ L ++ RKKR K
Sbjct: 61 TEAGTEGEATRRVERFIRRLRRLLPGVQIVRWDERYTSELAKERLREVGGPRKKRRDKGR 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQE L++
Sbjct: 121 IDQMAAVIILQEYLEQ 136
>gi|86157658|ref|YP_464443.1| Holliday junction resolvase-like protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|146325549|sp|Q2IQC1|RUVX_ANADE RecName: Full=Putative Holliday junction resolvase
gi|85774169|gb|ABC81006.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
2CP-C]
Length = 137
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLG RIGLA++D R A +VR+ + + + ++GLPLNM+
Sbjct: 5 GVDLGRVRIGLAVADEILRTARAVTTVVRRGEAEDLAAIAEVARDYEVTRAVVGLPLNMD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+EGP R F + + + VP +DERL++ A+ L VS + + +VD+ A
Sbjct: 65 GTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGVSARDQRGQVDAEA 123
Query: 141 AALILQEVLDR 151
AA+ILQ LDR
Sbjct: 124 AAVILQGWLDR 134
>gi|315641319|ref|ZP_07896395.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM
15952]
gi|315482892|gb|EFU73412.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM
15952]
Length = 145
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 78/135 (57%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
I +D+G++ +G+A+SDP A + + + + + + + I F++GLP
Sbjct: 3 IMGLDVGSRTVGIAVSDPMGWTAQGIEIIKINEDEDNFGFDRVKELADQYEIGHFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN + GPR ++ ++ + ++ +P + DERLTTV A+++LI+ N SR KR +
Sbjct: 63 KNMNNTIGPRAEASMSYGEKL-EQLFGLPVSYQDERLTTVQAERMLIEQANASRAKRKKV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 122 IDKLAAVMILQNFLD 136
>gi|317124716|ref|YP_004098828.1| Holliday junction resolvase YqgF [Intrasporangium calvum DSM 43043]
gi|315588804|gb|ADU48101.1| Holliday junction resolvase YqgF [Intrasporangium calvum DSM 43043]
Length = 165
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
ID+G R+G+A SDP FA+P L R +E ++ +T E ++ ++GLP +
Sbjct: 10 GIDVGDARVGVAASDPSGTFANPVQTLARDVRELADIEAIAILTAERDVLEIVVGLPRLL 69
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G EG RA+ + R VP DERLTTV A Q L D V + + VD
Sbjct: 70 SGGEGEAARGARAYAAQLAARVAPVPVRLVDERLTTVGAHQRLRDSGVPGRGQRSVVDQA 129
Query: 140 AAALILQEVLDRISFLESSKG 160
AA LILQ LD E+S G
Sbjct: 130 AAVLILQSALD----AEASAG 146
>gi|313884998|ref|ZP_07818750.1| RNAse H domain protein, YqgF family [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619689|gb|EFR31126.1| RNAse H domain protein, YqgF family [Eremococcus coleocola
ACS-139-V-Col8]
Length = 145
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 9/140 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAF 71
+ I +D+G+K +G+A+SD A + ++ + A + LL + +
Sbjct: 5 ERIVGLDVGSKTVGVAMSDLLGWIAQGLETI---RIDEEAGDFGFDRLLELLDQHQVKKV 61
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRK 130
+IGLP NMN + GPR +++ + ++D + + + DERLTT A+++L+ + NVSR
Sbjct: 62 VIGLPKNMNNTIGPRAQASQRYGQKLLDIRPDLLIAYQDERLTTSQAERMLVSEGNVSRS 121
Query: 131 KRIQKVDSIAAALILQEVLD 150
KR + +D +AA +ILQ LD
Sbjct: 122 KRKKVIDKLAAVIILQNYLD 141
>gi|218961790|ref|YP_001741565.1| putative Holliday junction resolvase [Candidatus Cloacamonas
acidaminovorans]
gi|167730447|emb|CAO81359.1| putative Holliday junction resolvase [Candidatus Cloacamonas
acidaminovorans]
Length = 138
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G KRIG+A+SDP R F+ P L K Q EL IT + IIG+P
Sbjct: 7 ILALDYGEKRIGIALSDPNRIFSKPLCVLSNKGFEQLVEELKKLITLHQVTLLIIGIPYA 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++GS P+ + ++ + D + + +DER +T A + L M + ++ + D+
Sbjct: 67 IDGSITPKTEECQQILNRLKDV-LSISVEGFDERYSTWEANEELKKMGYNWRQAKEIKDA 125
Query: 139 IAAALILQEVLDR 151
++AA+IL+E L++
Sbjct: 126 MSAAMILKEFLNQ 138
>gi|315924762|ref|ZP_07920979.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Pseudoramibacter alactolyticus ATCC 23263]
gi|315621661|gb|EFV01625.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Pseudoramibacter alactolyticus ATCC 23263]
Length = 143
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-LELLSFITTE-NIAAFIIG 74
+ I +D+G K +G+A+SD + + KK + A L + T+ NI + G
Sbjct: 3 EKILGLDIGDKYVGIAVSDA--LGVTAQGYRTYKKADRNADLAFFGDVVTQFNIKTAVAG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +M+G E +V T+ + N + +++ + ++ DERLTT +++ +LI V R+ R Q
Sbjct: 61 LPKDMDGRETAQVRKTKNYC-NFLAKRLGLEVIYIDERLTTRASEAVLIAGGVRRENRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
+D+++A LILQ LDR
Sbjct: 120 HIDTLSAQLILQMYLDR 136
>gi|313905326|ref|ZP_07838692.1| Holliday junction resolvase YqgF [Eubacterium cellulosolvens 6]
gi|313469796|gb|EFR65132.1| Holliday junction resolvase YqgF [Eubacterium cellulosolvens 6]
Length = 146
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFIIGL 75
I +D G K +G+A+SD A + R++ T+ T + I+ ++GL
Sbjct: 3 ILGLDYGAKTVGVAVSDALGITAQALETVTRERETKLRRTVARIAELCEQYEISKIVLGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV-SRKKRIQ 134
PL M+ G R F M+ ++ + + WDERLTTV+A ++L +M V R R
Sbjct: 63 PLLMSDEIGDRAQKAMEF-GEMLKKRTGLEVIMWDERLTTVAADEVLDEMGVRGRHNRKA 121
Query: 135 KVDSIAAALILQEVLD 150
+D IAA ILQE LD
Sbjct: 122 VIDQIAAGFILQEYLD 137
>gi|220917826|ref|YP_002493130.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
2CP-1]
gi|254767492|sp|B8JDZ9|RUVX_ANAD2 RecName: Full=Putative Holliday junction resolvase
gi|219955680|gb|ACL66064.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
2CP-1]
Length = 137
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLG RIGLA++D R A +VR+ + + + ++GLPLNM+
Sbjct: 5 GVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLAAIAEVARDYEVTRAVVGLPLNMD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+EGP R F + + + VP +DERL++ A+ L +S +++ +VD+ A
Sbjct: 65 GTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVDAEA 123
Query: 141 AALILQEVLDR 151
AA+ILQ LDR
Sbjct: 124 AAVILQGWLDR 134
>gi|225851249|ref|YP_002731483.1| hypothetical protein PERMA_1719 [Persephonella marina EX-H1]
gi|225645144|gb|ACO03330.1| conserved hypothetical protein [Persephonella marina EX-H1]
Length = 142
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 12/140 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
++D+GTKRIG+A SDP +P P++ + A E + + E +I +IGLPL +
Sbjct: 8 ALDVGTKRIGVAYSDPLGISTNPLPYIDN---DEHAFEKIRDVVREYDIGTVVIGLPLTL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
G EG + T+ F + K Y+P F DER TT A++ L + KKR +K
Sbjct: 65 KGKEGTQAKLTKEFAQKL---KGYLPEDVEIEFVDERFTTSLAEKQLKETGKRSKKR-EK 120
Query: 136 VDSIAAALILQEVLDRISFL 155
+DS++A IL+ L++ ++
Sbjct: 121 IDSLSAVYILKTYLEKKQYM 140
>gi|169350060|ref|ZP_02866998.1| hypothetical protein CLOSPI_00800 [Clostridium spiroforme DSM 1552]
gi|169293273|gb|EDS75406.1| hypothetical protein CLOSPI_00800 [Clostridium spiroforme DSM 1552]
Length = 139
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIG 74
+ I +DLG++ G+A+SD AH Q A ++ I I ++G
Sbjct: 2 EKILGLDLGSRTCGIAMSDALGMLAHGLETYRFNDGNYKQAANYVVEIINKNQIKTVVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
LP +MNG G R + F M+++KV + V DERLTT AQ LI +VSRKKR
Sbjct: 62 LPKHMNGDLGERAQISIMF-KEMLEKKVAGLNVVLVDERLTTKVAQDRLIFADVSRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA ILQ LD
Sbjct: 121 QVIDKMAAVAILQGYLD 137
>gi|54020386|ref|YP_115692.1| hypothetical protein mhp179 [Mycoplasma hyopneumoniae 232]
gi|62900952|sp|Q601M3|RUVX_MYCH2 RecName: Full=Putative Holliday junction resolvase
gi|148887034|sp|Q4A8G3|RUVX_MYCH7 RecName: Full=Putative Holliday junction resolvase
gi|148887035|sp|Q4AAD2|RUVX_MYCHJ RecName: Full=Putative Holliday junction resolvase
gi|53987559|gb|AAV27760.1| putative holliday junction resolvase [Mycoplasma hyopneumoniae 232]
gi|144227506|gb|AAZ44289.2| conserved hypothetical protein [Mycoplasma hyopneumoniae J]
Length = 143
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN-IAAFIIGLP 76
I ++DLG K G AISD + ++P F + + + ++F E I+ ++G P
Sbjct: 7 ILALDLGIKTCGFAISDQNWKISYPLEQFNFNRYDFASVISRIAFWMKEYPISILVLGYP 66
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L + G PR F +++ + + VF DERLTT AQ L+D+ +S KKR + +
Sbjct: 67 LTLAGKISPRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGISFKKRQKVI 125
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
D +AA +IL+ FL + KG
Sbjct: 126 DKLAAQIILER------FLNTKKG 143
>gi|320101933|ref|YP_004177524.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644]
gi|319749215|gb|ADV60975.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644]
Length = 183
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 81/136 (59%), Gaps = 5/136 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTEN-IAAFIIG 74
I ++D G KR+GLAISDPGR A P L R T ++ L + E+ + ++G
Sbjct: 4 ILALDHGLKRVGLAISDPGRSIASPLGRLERPGGEAGFTTEIQTLKRLVREHGVDRLVMG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G + P+ + R + + + +++ + ++ DER +T A +++ + +S KR +
Sbjct: 64 LPVHTSGRDSPQARAARQW-GDRVAKELGLTIIYVDERYSTKHADELMREAGLSAAKRKR 122
Query: 135 KVDSIAAALILQEVLD 150
+VDS+AA +IL++ LD
Sbjct: 123 RVDSLAAVVILRDYLD 138
>gi|256852221|ref|ZP_05557607.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260661747|ref|ZP_05862658.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii 115-3-CHN]
gi|282932651|ref|ZP_06338065.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
gi|297205613|ref|ZP_06923009.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii
JV-V16]
gi|256615267|gb|EEU20458.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260547494|gb|EEX23473.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii 115-3-CHN]
gi|281303225|gb|EFA95413.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
gi|297150191|gb|EFH30488.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii
JV-V16]
Length = 148
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+AISD G + + ++ + I E ++ F++GLP N
Sbjct: 5 GLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKIVREYDVTGFVLGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136
M+GS+G V+ ++ + ++ K +P + DERLTT+ A ++LI+ RKKR + +
Sbjct: 65 MDGSDGASVNRSKNY-GKRLEEKFSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRKEVI 123
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 124 DQMAAVLILQNYLD 137
>gi|15924606|ref|NP_372140.1| hypothetical protein SAV1616 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927196|ref|NP_374729.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus N315]
gi|156979934|ref|YP_001442193.1| hypothetical protein SAHV_1603 [Staphylococcus aureus subsp. aureus
Mu3]
gi|262048611|ref|ZP_06021494.1| hypothetical protein SAD30_1007 [Staphylococcus aureus D30]
gi|262051271|ref|ZP_06023495.1| hypothetical protein SA930_1702 [Staphylococcus aureus 930918-3]
gi|13701414|dbj|BAB42708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247387|dbj|BAB57778.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus Mu50]
gi|156722069|dbj|BAF78486.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|259160908|gb|EEW45928.1| hypothetical protein SA930_1702 [Staphylococcus aureus 930918-3]
gi|259163258|gb|EEW47817.1| hypothetical protein SAD30_1007 [Staphylococcus aureus D30]
gi|285817298|gb|ADC37785.1| Putative Holliday junction resolvase [Staphylococcus aureus
04-02981]
Length = 123
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 59/95 (62%)
Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
+L+ I N+ +IGLP NMN S G R ++ + +++ + V WDERL+T++
Sbjct: 28 QLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMA 87
Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
A++ L++ +VSR+KR Q +D +AA ILQ LD +
Sbjct: 88 AERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSL 122
>gi|183601534|ref|ZP_02962904.1| possible endonuclease [Bifidobacterium animalis subsp. lactis
HN019]
gi|219683929|ref|YP_002470312.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
AD011]
gi|241190967|ref|YP_002968361.1| putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241196373|ref|YP_002969928.1| putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|183219140|gb|EDT89781.1| possible endonuclease [Bifidobacterium animalis subsp. lactis
HN019]
gi|219621579|gb|ACL29736.1| putative Holliday junction resolvase [Bifidobacterium animalis
subsp. lactis AD011]
gi|240249359|gb|ACS46299.1| Putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240250927|gb|ACS47866.1| Putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|289178709|gb|ADC85955.1| Hypothetical cytosolic protein [Bifidobacterium animalis subsp.
lactis BB-12]
gi|295793956|gb|ADG33491.1| Putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis V9]
Length = 163
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 74/149 (49%), Gaps = 18/149 (12%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP----RPFLVRKKVTQTALELLSFITTEN--IAAFIIG 74
+DLG R+G+A S+P R FA+P R + +V L+L+ E + A IG
Sbjct: 7 GLDLGNARVGVAASNPERSFAYPEGNIRVYGDYFQVFDDVLDLIEDKAEEGTPVTAIAIG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHN--------MIDRKVYV----PFVFWDERLTTVSAQQIL 122
LPL M+GS G + + + M D+ ++ +F DERLTTV A + L
Sbjct: 67 LPLQMDGSAGSSAKKAQRWAKSLRRRLESEMEDQDSHIGVMPDIIFIDERLTTVDAHRRL 126
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDR 151
D NVS K+ VD +A ILQ LDR
Sbjct: 127 FDANVSSKQHRAVVDQQSAVEILQTALDR 155
>gi|239932416|ref|ZP_04689369.1| hypothetical protein SghaA1_29605 [Streptomyces ghanaensis ATCC
14672]
gi|291440782|ref|ZP_06580172.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291343677|gb|EFE70633.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 154
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DPG A P + + V L I ++GLP ++
Sbjct: 8 AIDVGDARIGVASCDPGGILATPVETVPGRDVPAAHRRLKQLIEEYEPIEVVVGLPRSLK 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R F + + VP DER+TTV+A Q L V KK +D A
Sbjct: 68 GGEGPAAAKVRGFARELARMIMPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127
Query: 141 AALILQEVL--DRISFLESSKG 160
A +ILQ+ L +R+S +G
Sbjct: 128 AVIILQQALESERVSGEPPGEG 149
>gi|332976666|gb|EGK13506.1| crossover junction endodeoxyribonuclease [Psychrobacter sp.
1501(2011)]
Length = 179
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 7/146 (4%)
Query: 10 VKSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTEN 67
K+ P Q + +D G K++G+A+ + + A P LV + LL I T
Sbjct: 20 TKNSSPEQTVLLGLDYGVKKMGMALGNTVTQDARPFDILVMNNGQPADWDNLLGIIDTWK 79
Query: 68 IAAFIIGLPLNMNGSE---GPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
I ++GLPLNM+GS R H R H +++++++VP +DERLT+V A+++
Sbjct: 80 IGRVVVGLPLNMDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAW 139
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVL 149
++ + + +R +D I+A L+LQ L
Sbjct: 140 ELGLIKNER-DPIDDISACLLLQSYL 164
>gi|238063897|ref|ZP_04608606.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149]
gi|237885708|gb|EEP74536.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149]
Length = 153
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFIIG 74
+D+G R+G+A SDP A P L R V EL++ I ++G
Sbjct: 11 GVDVGQVRVGVARSDPHGVLATPLVTLARDLTTADDAVPSDMAELVALIAEHECVEVVVG 70
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP+N+ G GP + +A+ + D VP DER++TV A + L + V K+R
Sbjct: 71 LPINLAGQHGPAARNVKAYADRLADVIAPVPVTLTDERMSTVVASRRLAEGGVRGKRRRA 130
Query: 135 KVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 131 VVDQAAAVEILQSWLD 146
>gi|309810777|ref|ZP_07704583.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185]
gi|308435257|gb|EFP59083.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185]
Length = 170
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
+D+GT R+G+A+SDP A P L R + ++ ++ + + A ++GLPLNM
Sbjct: 8 GVDVGTVRVGVAVSDPDGIMATPVETLARASASDKDVQRVAELADDARALEVVVGLPLNM 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G + + RA+ + + + + + DERLT+VSA Q L V+ ++ Q VD
Sbjct: 68 KGEDTASTQAARAWANTLKRLRPALRVILVDERLTSVSAHQSLHASGVAGREHRQHVDQQ 127
Query: 140 AAALILQEVLD 150
AA LILQ L+
Sbjct: 128 AAVLILQAALE 138
>gi|294786853|ref|ZP_06752107.1| putative Holliday junction resolvase [Parascardovia denticolens
F0305]
gi|315226489|ref|ZP_07868277.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Parascardovia denticolens DSM 10105]
gi|294485686|gb|EFG33320.1| putative Holliday junction resolvase [Parascardovia denticolens
F0305]
gi|315120621|gb|EFT83753.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Parascardovia denticolens DSM 10105]
Length = 176
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R+G+AISDP FAHP + V Q E+ I ++ +IG PL +
Sbjct: 35 GLDLGNARVGVAISDPELTFAHPEGNIRVAGDYFQAIDEITDLIDDHQVSHVVIGYPLQL 94
Query: 80 NGSEGPRVHSTRAFVHNMIDR-KVY----VPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+G+EG R F + R +Y V DER+TTV A L+D + ++
Sbjct: 95 DGTEGKSAKKARRFSLALEKRLALYQIQGVSLELKDERMTTVRAHSQLMDAGIGSRRHRP 154
Query: 135 KVDSIAAALILQEVLD 150
VD +A LILQ LD
Sbjct: 155 LVDQQSAVLILQAALD 170
>gi|197123036|ref|YP_002134987.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp. K]
gi|226725482|sp|B4UH04|RUVX_ANASK RecName: Full=Putative Holliday junction resolvase
gi|196172885|gb|ACG73858.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. K]
Length = 137
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLG RIGLA++D R A +VR+ + + + ++GLPLNM+
Sbjct: 5 GVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLSAIAEVARDYEVTRAVVGLPLNMD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+EGP R F + + + VP +DERL++ A+ L +S +++ +VD+ A
Sbjct: 65 GTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVDAEA 123
Query: 141 AALILQEVLDR 151
AA+ILQ LDR
Sbjct: 124 AAVILQGWLDR 134
>gi|167756782|ref|ZP_02428909.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
gi|237734500|ref|ZP_04564981.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|167702957|gb|EDS17536.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
gi|229382320|gb|EEO32411.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 139
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKK-VTQTALELLSFITTENIAAFIIG 74
+ I +DLG++ G+AISD AH + R + A +++ I I ++G
Sbjct: 2 ERILGLDLGSRTCGIAISDTLGMLAHGIETYRFRDDDYDRAAKHVVALINEHQIKTVVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
LP +MNG G R + F M++++V + V DERLTT AQ LI +VSRKKR
Sbjct: 62 LPKHMNGDLGERAQISIMF-KEMLEKEVPGLNVVLIDERLTTKVAQDQLIFADVSRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA ILQ LD
Sbjct: 121 QVIDKMAAVAILQGYLD 137
>gi|224476714|ref|YP_002634320.1| Holliday junction resolvase-like protein [Staphylococcus carnosus
subsp. carnosus TM300]
gi|254767525|sp|B9DNH1|RUVX_STACT RecName: Full=Putative Holliday junction resolvase
gi|222421321|emb|CAL28135.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 142
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTAL-ELLSFITTENIAAFIIG 74
I +D+G+K +G+A+SD A L + ++ + + +L I E+ +IG
Sbjct: 4 HKIIGLDVGSKTVGVAVSDLMGWTAQGLDTLRINEEENELGITKLAEIIKKEDADTVVIG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN S G R ++ + ++ + V WDERL+T++A++ L++ +VSR KR +
Sbjct: 64 LPKNMNNSIGFRGEASLKYKEELLKILPDINVVMWDERLSTMAAERSLLEADVSRSKRKK 123
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA ILQ LD +
Sbjct: 124 VIDKMAAVFILQGYLDSL 141
>gi|310287354|ref|YP_003938612.1| resolvase [Bifidobacterium bifidum S17]
gi|309251290|gb|ADO53038.1| resolvase [Bifidobacterium bifidum S17]
Length = 156
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 13/143 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
+DLG R+GLA+SDP FAHP + + AL+ +++ I E + ++GLPL +
Sbjct: 9 GVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQL 68
Query: 80 NGSEGPRVHSTRAF-------VHNMIDRK----VYVPFV-FWDERLTTVSAQQILIDMNV 127
+G+EG R + + N++D ++P V DERLTTVSA + L++ +
Sbjct: 69 DGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQL 128
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
++ VD +A +ILQ LD
Sbjct: 129 GSRRHRPVVDQQSAVVILQTALD 151
>gi|23465455|ref|NP_696058.1| endonuclease [Bifidobacterium longum NCC2705]
gi|322688961|ref|YP_004208695.1| endonuclease [Bifidobacterium longum subsp. infantis 157F]
gi|322690930|ref|YP_004220500.1| endonuclease [Bifidobacterium longum subsp. longum JCM 1217]
gi|23326107|gb|AAN24694.1| possible endonuclease [Bifidobacterium longum NCC2705]
gi|320455786|dbj|BAJ66408.1| putative endonuclease [Bifidobacterium longum subsp. longum JCM
1217]
gi|320460297|dbj|BAJ70917.1| putative endonuclease [Bifidobacterium longum subsp. infantis 157F]
Length = 145
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 13/141 (9%)
Query: 24 LGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
+G R+GLA+SDP FAHP + V E+L+ I E++ I+GLPL M+G+
Sbjct: 1 MGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGT 60
Query: 83 EGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNVSRK 130
EG R + N+ R + +P V DERLTTVSA + L + + +
Sbjct: 61 EGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASN 120
Query: 131 KRIQKVDSIAAALILQEVLDR 151
K VD +A +ILQ LDR
Sbjct: 121 KHRPVVDQQSAVVILQTALDR 141
>gi|320458617|dbj|BAJ69238.1| putative endonuclease [Bifidobacterium longum subsp. infantis ATCC
15697]
Length = 144
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 13/141 (9%)
Query: 24 LGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
+G R+GLA+SDP FAHP + V E+L+ I E++ I+GLPL M+G+
Sbjct: 1 MGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGT 60
Query: 83 EGPRVHSTRAFVHNMIDR-----------KVYVPFV-FWDERLTTVSAQQILIDMNVSRK 130
EG R + N+ R + +P V DERLTTVSA + L + + +
Sbjct: 61 EGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASN 120
Query: 131 KRIQKVDSIAAALILQEVLDR 151
K VD +A +ILQ LDR
Sbjct: 121 KHRPVVDQQSAVVILQTALDR 141
>gi|311064195|ref|YP_003970920.1| endonuclease involved in recombination [Bifidobacterium bifidum
PRL2010]
gi|313140070|ref|ZP_07802263.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|310866514|gb|ADP35883.1| Endonuclease involved in recombination [Bifidobacterium bifidum
PRL2010]
gi|313132580|gb|EFR50197.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 152
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 13/143 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
+DLG R+GLA+SDP FAHP + + AL+ +++ I E + ++GLPL +
Sbjct: 5 GVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQL 64
Query: 80 NGSEGPRVHSTRAF-------VHNMIDRK----VYVPFV-FWDERLTTVSAQQILIDMNV 127
+G+EG R + + N++D ++P V DERLTTVSA + L++ +
Sbjct: 65 DGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQL 124
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
++ VD +A +ILQ LD
Sbjct: 125 GSRRHRPVVDQQSAVVILQTALD 147
>gi|257063514|ref|YP_003143186.1| conserved hypothetical protein TIGR00250 [Slackia
heliotrinireducens DSM 20476]
gi|256791167|gb|ACV21837.1| conserved hypothetical protein TIGR00250 [Slackia
heliotrinireducens DSM 20476]
Length = 138
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G RIGLA+SD R A P L V E + I + GLP
Sbjct: 3 VLALDIGEVRIGLAVSDAAGRIASPLKVLPADVVLNDGREFRMLVEDWEIEHLVCGLPYT 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M G EGP+ S + + + +P F DERL++ A++IL + + + KVD
Sbjct: 63 MAGEEGPQAASIKEKARQIASAR-DLPLSFVDERLSSAEAKRILREEGLDERSMRGKVDM 121
Query: 139 IAAALILQEVLD 150
IAA+L LQ LD
Sbjct: 122 IAASLFLQAWLD 133
>gi|223986206|ref|ZP_03636224.1| hypothetical protein HOLDEFILI_03534 [Holdemania filiformis DSM
12042]
gi|223961820|gb|EEF66314.1| hypothetical protein HOLDEFILI_03534 [Holdemania filiformis DSM
12042]
Length = 139
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 17/142 (11%)
Query: 19 IASIDLGTKRIGLAISDP----GR-----RFAHPRPFLVRKKVTQTALELLSFITTENIA 69
I +DLG++ +G+A+SDP R RFA + Q A EL
Sbjct: 4 IMGLDLGSRTLGIAVSDPLGMIARTVETFRFADDDYDAACARAVQLAKEL-------GAV 56
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
F++GLP +MNG G R + F + + +P + DERLTT +A++ILI +VSR
Sbjct: 57 KFVLGLPKHMNGDVGIRGQISLDFKAKL-EAACGLPVILQDERLTTAAAERILISADVSR 115
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
KKR +D +AA ILQ LD+
Sbjct: 116 KKRKAVIDQMAAVQILQSYLDQ 137
>gi|218282249|ref|ZP_03488548.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989]
gi|218216787|gb|EEC90325.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989]
Length = 141
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 19 IASIDLGTKRIGLAISDP----GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
I +DLG+K G++I D R R E+L + + ++G
Sbjct: 4 IIGLDLGSKTCGVSICDALHITCRALTTVR--FESDDYDACLEEVLKLLQENKVKEVVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +MNG G R + F + + V WDERLTTV+A++IL+ +VSRKKR +
Sbjct: 62 LPKHMNGDIGIRGEISCEFAKKLESSGIKVHL--WDERLTTVAAEKILLQGDVSRKKRKK 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA ILQ LDR
Sbjct: 120 VIDQMAAVQILQSFLDR 136
>gi|81428003|ref|YP_395002.1| Holliday junction resolvase-like protein [Lactobacillus sakei
subsp. sakei 23K]
gi|146325576|sp|Q38YN7|RUVX_LACSS RecName: Full=Putative Holliday junction resolvase
gi|78609644|emb|CAI54690.1| Hypothetical protein LCA_0389 [Lactobacillus sakei subsp. sakei
23K]
Length = 147
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELL-SFITTENIAAFIIGLP 76
+ D+G++ +G+A+SD A + + + ++ L+ + + + F++GLP
Sbjct: 3 LMGFDVGSRTVGIAVSDLFGWTAQGVEIIRINEDESEFGLDRVKELVAQHQVTGFVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN S GPR + + + + +P + DERLTTV A+++L++ + SRKKR Q
Sbjct: 63 KNMNNSIGPRAVKAQEYGAMLTELFPEIPVDYIDERLTTVQAERMLVEQADTSRKKRKQV 122
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 123 IDKLAAVMILQNYLD 137
>gi|268608523|ref|ZP_06142250.1| Holliday junction resolvase YqgF [Ruminococcus flavefaciens FD-1]
Length = 143
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I S+D G R G+A+ A P + K + + + + ++G P N
Sbjct: 3 IMSVDFGDARTGIAVCGKSEMIASPVTVIPEKDFDKCIEKTAALAKEQRAEQIVVGYPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G R F + + +P WDER TTVSA L N KKR VD+
Sbjct: 63 MNGTIGERCEKCTLFAEKL-EEMTGIPTRLWDERCTTVSAHNYLNVTNTRGKKRKNVVDA 121
Query: 139 IAAALILQEVLD 150
+AA +IL+ L+
Sbjct: 122 VAAVIILESYLE 133
>gi|46199780|ref|YP_005447.1| yqgf-family protein [Thermus thermophilus HB27]
gi|55981798|ref|YP_145095.1| hypothetical protein TTHA1829 [Thermus thermophilus HB8]
gi|62900932|sp|Q5SHA1|RUVX_THET8 RecName: Full=Putative Holliday junction resolvase
gi|62900992|sp|Q72HK9|RUVX_THET2 RecName: Full=Putative Holliday junction resolvase
gi|46197407|gb|AAS81820.1| yqgf-Family protein [Thermus thermophilus HB27]
gi|55773211|dbj|BAD71652.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 135
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G RIGLA+ + G A R +LVRK + + LL F+ E + ++GLPL
Sbjct: 3 VGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLR 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ E + V + R V V WDER TT AQ+ L ++ K+D
Sbjct: 63 TDLKESAQAGKVLPLVEALRARGVEVE--LWDERFTTKLAQERLKHAPKRLRRDKGKLDE 120
Query: 139 IAAALILQEVLDR 151
+AA ++L++ L R
Sbjct: 121 LAAVVLLEDYLAR 133
>gi|225181970|ref|ZP_03735403.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1]
gi|225167332|gb|EEG76150.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1]
Length = 138
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G + IG+A SD A + R + + ++ ++G P N
Sbjct: 3 ILGLDVGDRTIGVAASDALGWTAQGLEVIRRTTWENDLKRIRELVAEYEVSLIVVGYPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GPR + F + + ++ +P WDERLTT+ A++ L+ ++SR KR + +D
Sbjct: 63 MNNTVGPRAKLSEEFA-DKLSAELNLPVKLWDERLTTMEAERTLLSADMSRAKRKKVIDK 121
Query: 139 IAAALILQEVL 149
+AA LILQ L
Sbjct: 122 MAAVLILQNYL 132
>gi|227495467|ref|ZP_03925783.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM
15436]
gi|226831014|gb|EEH63397.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM
15436]
Length = 155
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 65/130 (50%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D G RIG+A++DP + + P L ELL+ I + +IG+P+++N
Sbjct: 9 GVDYGKSRIGVAVTDPSGKISFPHTTLQFSPYGVHLDELLNLIVEKQAIEVVIGMPVHLN 68
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG R F + + + DERLTT A L +M V + R K+D +A
Sbjct: 69 GKEGSSAEFVRDFANELAVEIPDIRVCLMDERLTTNQAHAGLSEMGVDNRARKNKIDQLA 128
Query: 141 AALILQEVLD 150
A++IL+ ++
Sbjct: 129 ASIILENAIE 138
>gi|253583471|ref|ZP_04860669.1| DNA integration/recombination/inversion protein [Fusobacterium
varium ATCC 27725]
gi|251834043|gb|EES62606.1| DNA integration/recombination/inversion protein [Fusobacterium
varium ATCC 27725]
Length = 139
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+D+G RIG+A SD A P + RKK T+ + T EN A ++G+P +++
Sbjct: 7 SLDVGDVRIGVAKSDIMGIVATPLEVIDRKK-TKAVKRIKELCTQENTKALVVGIPKSLD 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137
G+E + R F+ + + + DERLTTVSA ++L + N +K ++K VD
Sbjct: 66 GTEKRQAEKVREFIAKLNKEIEGLEIIEVDERLTTVSADRMLNESN--KKGALEKRKVVD 123
Query: 138 SIAAALILQEVLD 150
IAAA+ILQ LD
Sbjct: 124 KIAAAIILQTFLD 136
>gi|119716635|ref|YP_923600.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614]
gi|167012741|sp|A1SJC8|RUVX_NOCSJ RecName: Full=Putative Holliday junction resolvase
gi|119537296|gb|ABL81913.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614]
Length = 156
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTEN--IAAFIIGLPL 77
ID G RIG+A SDP A P + R K + +L+ E + ++GLP
Sbjct: 8 GIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEVVVGLPR 67
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+++G EGP R F + R VP DER+TTVSA+ +L D + KR VD
Sbjct: 68 SLSGREGPAAAKVREFAGRLAARVAPVPVRLVDERMTTVSAEAMLRDQGRTGGKRRAVVD 127
Query: 138 SIAAALILQEVLD 150
AA LILQ LD
Sbjct: 128 QAAAVLILQHALD 140
>gi|303241625|ref|ZP_07328124.1| Holliday junction resolvase YqgF [Acetivibrio cellulolyticus CD2]
gi|302590845|gb|EFL60594.1| Holliday junction resolvase YqgF [Acetivibrio cellulolyticus CD2]
Length = 140
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ID G RIG+A+SDP G + + + ++ + I+G P
Sbjct: 3 IIGIDYGDSRIGIAVSDPLGWTAQGIETISWKNDIEEPIKRIVELVNLYEAKKLIVGFPK 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR T F+ + R + + WDERL+TVSA + + ++ V + K+ VD
Sbjct: 63 NMNGTIGPRGEKTNDFIELITARIEGIQIIKWDERLSTVSANRTMHELGVKKSKKKHVVD 122
Query: 138 SIAAALILQEVLD 150
IAA ILQ LD
Sbjct: 123 QIAAVYILQGYLD 135
>gi|322436322|ref|YP_004218534.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX9]
gi|321164049|gb|ADW69754.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX9]
Length = 143
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G RIG+A++DP A P L RK + A LL I + ++G PL+
Sbjct: 6 IMALDVGKARIGIALTDPLGYTAQPLLTLWRKTRNEDARSLLRLIRKHEVTHLVVGNPLH 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVD 137
++G P F + +R +P WDERL++V+A +IL + +R K R +D
Sbjct: 66 LSGDLSPFAAKVHEFAEYLRER-TEIPIQLWDERLSSVAANEILDEAGHARGKDRKFIID 124
Query: 138 SIAAALILQ 146
+AA LIL+
Sbjct: 125 QVAAVLILE 133
>gi|229817701|ref|ZP_04447983.1| hypothetical protein BIFANG_02973 [Bifidobacterium angulatum DSM
20098]
gi|229785490|gb|EEP21604.1| hypothetical protein BIFANG_02973 [Bifidobacterium angulatum DSM
20098]
Length = 154
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 13/144 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
IDLG R+GLA+SDP FAHP V + +++ I EN+ ++GLPL +
Sbjct: 5 GIDLGDARVGLAVSDPELTFAHPIGNVQVYGDSFRAIDDVIYTIEDENVDHVVVGLPLLL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDR-KVY----------VPFV-FWDERLTTVSAQQILIDMNV 127
+G EG R + N+ R +Y VP + DERLTTVSA + L N+
Sbjct: 65 SGEEGKSAKKARRWASNLAKRIDLYMQSGETTLEQVPEIELMDERLTTVSAHRQLRQANI 124
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
+ + VD +A +ILQ LD+
Sbjct: 125 AERGHRPVVDQQSAVVILQAALDK 148
>gi|257452889|ref|ZP_05618188.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_5R]
gi|257466746|ref|ZP_05631057.1| DNA integration/recombination/invertion protein [Fusobacterium
gonidiaformans ATCC 25563]
gi|315917895|ref|ZP_07914135.1| DNA integration/recombination/inversion protein [Fusobacterium
gonidiaformans ATCC 25563]
gi|317059431|ref|ZP_07923916.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
3_1_5R]
gi|313685107|gb|EFS21942.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
3_1_5R]
gi|313691770|gb|EFS28605.1| DNA integration/recombination/inversion protein [Fusobacterium
gonidiaformans ATCC 25563]
Length = 139
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A SD A P + R+K+ + ++ EN + ++G+P +++
Sbjct: 7 ALDVGDVRIGVAKSDIMGIIASPLETIDRRKM-KPVKRIIELCEQENTKSIVVGIPKSLD 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137
GSE + R F+H + V DER TTV+A QIL +MN RK ++K VD
Sbjct: 66 GSEKRQAEKVRIFIHALKSAIPGVEIFEVDERFTTVTADQILTEMN--RKGALEKRKVVD 123
Query: 138 SIAAALILQEVLD 150
+AA+LILQ+ L+
Sbjct: 124 KVAASLILQQYLN 136
>gi|46446457|ref|YP_007822.1| hypothetical protein pc0823 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400098|emb|CAF23547.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 134
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 28 RIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITT------ENIAAFIIGLPLNMN 80
RIGLA SD + A P + KK QT ++LL I+ I +IGLPL M+
Sbjct: 3 RIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKCEIEEIVIGLPLMMS 62
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G G + F ++ + +P WDERLTTV A++ L + ++RKKR + VD ++
Sbjct: 63 GRTGFLADEVKHFAQ-LLQQLTPIPIRLWDERLTTVQAERSLRESQLTRKKRSKVVDIVS 121
Query: 141 AALILQEVLD 150
A++ILQ LD
Sbjct: 122 ASIILQSYLD 131
>gi|313674137|ref|YP_004052133.1| holliday junction resolvase yqgf [Marivirga tractuosa DSM 4126]
gi|312940835|gb|ADR20025.1| Holliday junction resolvase YqgF [Marivirga tractuosa DSM 4126]
Length = 137
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 8/137 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +ID GTKR+GLA++DP + A P + K + Q L ++ ++E + A + G P N
Sbjct: 4 VLAIDYGTKRVGLAVTDPLKIIASPLEMIHSKDLVQY---LANYFSSEEVEAVVCGYPTN 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
G AF+ N+ +K +P DE ++ A Q +I +RK+R +K
Sbjct: 61 EEGEATDATRHVDAFI-NLFKKKFPTMPLHLQDESFSSQEAMQAMIHSGSNRKQRNKKSG 119
Query: 136 -VDSIAAALILQEVLDR 151
+D I+AA+ILQ+ L+
Sbjct: 120 NIDKISAAIILQQFLEE 136
>gi|171743065|ref|ZP_02918872.1| hypothetical protein BIFDEN_02191 [Bifidobacterium dentium ATCC
27678]
gi|283455925|ref|YP_003360489.1| Holliday junction resolvase [Bifidobacterium dentium Bd1]
gi|171278679|gb|EDT46340.1| hypothetical protein BIFDEN_02191 [Bifidobacterium dentium ATCC
27678]
gi|283102559|gb|ADB09665.1| Holliday junction resolvase [Bifidobacterium dentium Bd1]
Length = 158
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
+DLG R+GLA+SDP AHP + + AL E++ I E++ ++GLPL +
Sbjct: 5 GVDLGDARVGLALSDPELTLAHPAGNIQVYGDSFRALDEVIDVIEDESVDHVVVGLPLLL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSAQQILIDMNV 127
NG G R + N+ R V DERLTTV+A Q L D +
Sbjct: 65 NGEAGKSAKKARRWAANLEKRMQAAAQDESEPLNVIPTIELVDERLTTVTAHQQLFDAQI 124
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
++ VD +A +ILQ LDR
Sbjct: 125 GGRRHRPMVDQQSAVVILQTALDR 148
>gi|315172764|gb|EFU16781.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1346]
Length = 140
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
I +D+G++ +G+A+SD A + + + L + + F++GLP
Sbjct: 3 IMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN S GPR ++ A+ + I +P + DERLTTV A++ L++ N SR KR +
Sbjct: 63 KNMNNSIGPRAEASMAY-GDKIQELFQLPVDYQDERLTTVQAERFLVEQANASRAKRKKV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 122 IDKLAAVMILQNYLD 136
>gi|238855617|ref|ZP_04645918.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
gi|260665323|ref|ZP_05866171.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii SJ-7A-US]
gi|282933009|ref|ZP_06338403.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
gi|313473102|ref|ZP_07813586.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153]
gi|238831761|gb|EEQ24097.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
gi|239528661|gb|EEQ67662.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153]
gi|260560827|gb|EEX26803.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii SJ-7A-US]
gi|281302863|gb|EFA95071.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
Length = 148
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL----VRKKVTQTALELLSFITTENIAAFIIGLP 76
+D+G+K +G+AISD A + R A++ L + ++ F++GLP
Sbjct: 5 GLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKL--VREYDVTGFVLGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQ 134
NM+GS+G V ++ + + D K +P + DERLTT+ A ++LI+ RKKR +
Sbjct: 63 KNMDGSDGVSVSRSKNYGKRLED-KFSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRKE 121
Query: 135 KVDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 122 VIDQMAAVLILQNYLD 137
>gi|307326783|ref|ZP_07605975.1| Holliday junction resolvase YqgF [Streptomyces violaceusniger Tu
4113]
gi|306887546|gb|EFN18540.1| Holliday junction resolvase YqgF [Streptomyces violaceusniger Tu
4113]
Length = 154
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 63/130 (48%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DP A P + + + L + + ++GLP +++
Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAALVEEYEPLEVVVGLPRSLS 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R F + R VP DER+TTV+A Q L V+ KK VD A
Sbjct: 68 GREGPAAAKVRTFARELARRVAPVPVRLVDERMTTVTASQGLRASGVTSKKGRSVVDQAA 127
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 128 AVVILQSALE 137
>gi|306822870|ref|ZP_07456246.1| possible Holliday junction resolvase [Bifidobacterium dentium ATCC
27679]
gi|309801316|ref|ZP_07695445.1| RNAse H domain protein, YqgF family [Bifidobacterium dentium
JCVIHMP022]
gi|304553502|gb|EFM41413.1| possible Holliday junction resolvase [Bifidobacterium dentium ATCC
27679]
gi|308222205|gb|EFO78488.1| RNAse H domain protein, YqgF family [Bifidobacterium dentium
JCVIHMP022]
Length = 158
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
+DLG R+GLA+SDP AHP + + AL E++ I E++ ++GLPL +
Sbjct: 5 GVDLGDARVGLALSDPELTLAHPAGNIQVYGDSFRALDEVIDVIEDESVDHVVVGLPLLL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSAQQILIDMNV 127
NG G R + N+ R V DERLTTV+A Q L D +
Sbjct: 65 NGEAGKSAKKARRWAANLEKRMRAAAQDESEPLNVIPTIELVDERLTTVTAHQQLFDAQI 124
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
++ VD +A +ILQ LDR
Sbjct: 125 GGRRHRPMVDQQSAVVILQTALDR 148
>gi|317487355|ref|ZP_07946146.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6]
gi|316921378|gb|EFV42673.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6]
Length = 142
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID G KR G+A+SD G A PR ++ + ELL+ I E A +IGLP+N++
Sbjct: 5 AIDYGQKRTGIAVSDTGGSMAFPRKTILMRTRAAFFEELLALIEAEATDAIVIGLPINLD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G E R F ++ R+ +P + +E L++ A++ L D S + +D A
Sbjct: 65 GEESLTTRQVRNFSKSLA-RRTTLPLFWMEEALSSYEAERDLRDAGRSAAQGRAVLDQQA 123
Query: 141 AALILQEVLDR 151
A ILQ LD+
Sbjct: 124 AVRILQSFLDQ 134
>gi|57239291|ref|YP_180427.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
Welgevonden]
gi|58579255|ref|YP_197467.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
Welgevonden]
gi|62900902|sp|Q5HAW7|RUVX_EHRRW RecName: Full=Putative Holliday junction resolvase
gi|57161370|emb|CAH58293.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
Welgevonden]
gi|58417881|emb|CAI27085.1| Putative Holliday junction resolvase [Ehrlichia ruminantium str.
Welgevonden]
Length = 156
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 1/151 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I + + + + I +D G K+IG+A+SD A P VRK + L +
Sbjct: 6 INEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGSLYGILIE 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ + +IGLPL++ G F + MI +K + DER +T A ++
Sbjct: 66 NDAGSMVIGLPLDLFGMGNELCDKVMLFANRMI-KKYAINIYLHDERYSTAMATRVAKLA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
N+ RK+ + D IAA LILQ+VLD + +
Sbjct: 125 NIKRKESQKIDDKIAAVLILQQVLDMVKIYQ 155
>gi|298492528|ref|YP_003722705.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708]
gi|298234446|gb|ADI65582.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708]
Length = 158
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 15 PNQPIAS------IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
P Q + S +D+G+KRIGLA D A + RK + ++ + +
Sbjct: 3 PQQKLKSFISALGVDVGSKRIGLAGCDGTGLIATGLTTIDRKSFEEDVEQIQQIVNARRV 62
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP M+GS G + + F H + + + +P + DERLT+ A+Q+LI N S
Sbjct: 63 QVLVVGLPYAMDGSLGFQARHVQKFTHRLA-QALKLPVEYVDERLTSYQAEQLLIAENRS 121
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
+ +D AAALILQ+ LD
Sbjct: 122 PSRHKGLIDRKAAALILQQWLD 143
>gi|260893291|ref|YP_003239388.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4]
gi|260865432|gb|ACX52538.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4]
Length = 146
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G K IG+A+SDP A L R + + +L + +IGLP
Sbjct: 3 ILALDVGDKTIGVAVSDPFGLTAQGLKVLHRGEEAEDVQHVLELARRYEVEEVVIGLPRT 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ G GP+ F + + + + ++WDER TT A+++L+ +VSRKKR + D
Sbjct: 63 LAGEIGPQAQKVLRFGELLAQQGLKI--IYWDERFTTKEAEKVLLAADVSRKKRRRVKDI 120
Query: 139 IAAALILQEVLDR 151
+AA L+L+ L++
Sbjct: 121 LAAVLLLEAYLEK 133
>gi|313902392|ref|ZP_07835795.1| Holliday junction resolvase YqgF [Thermaerobacter subterraneus DSM
13965]
gi|313467323|gb|EFR62834.1| Holliday junction resolvase YqgF [Thermaerobacter subterraneus DSM
13965]
Length = 330
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLG++ IG+AISDP A P L R+ + ++ ++G P ++
Sbjct: 5 GLDLGSRVIGVAISDPEGILARPLASLPRQGDDRDIARVVELARQHGAEGIVVGWPRRLD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G GP + AF + V WDERL+TV A+++LID ++SR++R +D +A
Sbjct: 65 GRRGPEAEAAEAFAAGLQAAGVSR-VTLWDERLSTVQAERVLIDADLSRRRRKAIIDRMA 123
Query: 141 AALILQEVLDRISFLESSK 159
A +ILQ +FLE+ +
Sbjct: 124 ATVILQ------AFLEAQR 136
>gi|237755542|ref|ZP_04584161.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237692305|gb|EEP61294.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 145
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 13/140 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G KRIG+A+SDP A P F++ +KV + +L I I+ +IGLPL
Sbjct: 4 ILGLDIGLKRIGVAVSDPFGVTATPLEFILNDEKVFEKINDL---IKNYKISKIVIGLPL 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRKKRI 133
+ G EG + T+ F N+ K ++P +F DER T+ A++ L +K +
Sbjct: 61 TLKGEEGEQARYTKDFAENL---KNHIPQDIEIIFIDERFTSSLAEKTL--SQTKKKNKK 115
Query: 134 QKVDSIAAALILQEVLDRIS 153
+K+DS++A ILQ LDR+S
Sbjct: 116 EKIDSLSAVFILQTYLDRLS 135
>gi|148651960|ref|YP_001279053.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1]
gi|172048441|sp|A5WBR2|RUVX_PSYWF RecName: Full=Putative Holliday junction resolvase
gi|148571044|gb|ABQ93103.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1]
Length = 177
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 14 KPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAF 71
+P Q + +D G K++G+A+ + + A P L + LL I T I
Sbjct: 22 RPEQTVLLGLDYGVKKMGMALGNTVTQDARPFDILAMNNGQPADWDNLLGIIDTWRIGRV 81
Query: 72 IIGLPLNMNGSE---GPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
++GLPLNM+GS R H R H +++++++VP +DERLT+V A+++ ++ +
Sbjct: 82 VVGLPLNMDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAWELGL 141
Query: 128 SRKKRIQKVDSIAAALILQEVL 149
+ +R +D I+A L+LQ L
Sbjct: 142 IKNER-DPIDDISACLLLQSYL 162
>gi|310829301|ref|YP_003961658.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612]
gi|308741035|gb|ADO38695.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612]
Length = 178
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 80/138 (57%), Gaps = 9/138 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE----NIAAFI 72
+ + +D+G K IG+A+SDP A + K+ T+ + L+F T N+ +
Sbjct: 40 ERLLGLDVGDKYIGIAVSDPLGITAQG--YRTWKRGTRD--DDLAFFTDVVEQFNVTTLV 95
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
GLP +M G+E + TR F + +++ + V+ DERLT+ +++++LI+ V R+KR
Sbjct: 96 SGLPKDMEGNETAQARKTRNFCQ-FLKKRLNLEVVYIDERLTSKASERVLIEGGVRREKR 154
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D++AA +ILQ LD
Sbjct: 155 KEYIDTLAAQMILQVYLD 172
>gi|58617309|ref|YP_196508.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
Gardel]
gi|62900898|sp|Q5FFQ2|RUVX_EHRRG RecName: Full=Putative Holliday junction resolvase
gi|58416921|emb|CAI28034.1| Putative Holliday junction resolvase [Ehrlichia ruminantium str.
Gardel]
Length = 156
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 1/151 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I + + + + I +D G K+IG+A+SD A P VRK + L +
Sbjct: 6 INEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGGLYGILIE 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ + +IGLPL++ G F + MI +K + DER +T A ++
Sbjct: 66 NDAGSMVIGLPLDLFGMGNELCDKVMLFANRMI-KKYAINIYLHDERYSTAMATRVAKLA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
N+ RK+ + D IAA LILQ+VLD + +
Sbjct: 125 NIKRKESQKIDDKIAAVLILQQVLDMVKIYQ 155
>gi|88658457|ref|YP_507277.1| hypothetical protein ECH_0460 [Ehrlichia chaffeensis str. Arkansas]
gi|146325573|sp|Q2GH06|RUVX_EHRCR RecName: Full=Putative Holliday junction resolvase
gi|88599914|gb|ABD45383.1| conserved hypothetical protein TIGR00250 [Ehrlichia chaffeensis
str. Arkansas]
Length = 156
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 1/151 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+++ +K + + I +D G K+IG+A+SD A P VR+ + L S
Sbjct: 6 VDEFIKVIDKTKRIMGLDFGEKKIGIALSDRTNLIAIPYSVYVRRSSRKDLGSLYSIFVE 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
++ + +IG PL ++G E F + +I R + DER +T A ++
Sbjct: 66 NDVGSIVIGWPLELSGVENELCQKVVMFANRIITR-YKINICLHDERYSTAMATRLAKLA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
N+ RK+ D I+A LILQ+VLD I +
Sbjct: 125 NIKRKESQAIDDKISAVLILQQVLDIIKVYQ 155
>gi|317154143|ref|YP_004122191.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
gi|316944394|gb|ADU63445.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
Length = 138
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78
ID G KR+GLAISD R P+L ++ T+ AL ++ I E++ A ++GLPL+
Sbjct: 5 GIDFGLKRVGLAISD--RSGILVSPYLTLERTTRDALFEAIIEIIRQESVEAIVVGLPLS 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G + R F ++ R+ +P DERLT+ A++ L ++ KR +DS
Sbjct: 63 MDGEDTLTTRQARNFAQSL-GRRTDLPIHLADERLTSAQAEEELNAADLRGTKRKMALDS 121
Query: 139 IAAALILQEVLD 150
AA +IL+ L+
Sbjct: 122 QAAVIILRTWLE 133
>gi|117928536|ref|YP_873087.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B]
gi|117648999|gb|ABK53101.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B]
Length = 173
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA-FIIGLPLNM 79
+D+GT RIG+A+SDP R A P L R L L+ + E A ++GLP+++
Sbjct: 13 GVDVGTVRIGVAVSDPDGRLAVPAETLPRDASGAGELRRLAQLVEERGAVEVVVGLPVSL 72
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G+ G + + VP DER TTV A + L ++ ++R VD +
Sbjct: 73 RGTAGAAARDIAGYARRLATAVHPVPVRLVDERFTTVHADRRLQSAGLAGRQRRAVVDQL 132
Query: 140 AAALILQEVLD 150
AAA++LQ+ LD
Sbjct: 133 AAAILLQDALD 143
>gi|306821649|ref|ZP_07455247.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304550394|gb|EFM38387.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 142
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 75/133 (56%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I +D+G ++IG+A+SD A P+ + K + + ++L I +I ++GLP
Sbjct: 2 ERILGLDIGKQKIGIAMSDLLGMTAQPKATIRSKNLEEQMQKILDIIKENSIKEVVVGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
++NG +G + T++FV + + + ++ DER T+ A + L M++ + K + +
Sbjct: 62 KDINGKDGEQALWTKSFVEKLTLKNENIKIIYIDERYTSKLALKNLSHMSMKKVKDKELI 121
Query: 137 DSIAAALILQEVL 149
DS+AAA IL+ L
Sbjct: 122 DSLAAASILETYL 134
>gi|319935504|ref|ZP_08009939.1| Holliday junction resolvase [Coprobacillus sp. 29_1]
gi|319809535|gb|EFW05952.1| Holliday junction resolvase [Coprobacillus sp. 29_1]
Length = 140
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN-IAAFIIG 74
+ I +DLG++ G+AISDP A + + ++A + I EN I ++G
Sbjct: 2 EKILGLDLGSRTCGIAISDPLGIIAQGVETYRFKDNHYKSAAYHIKTIVQENNIHTIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +MNG G R + F + ++ + V + DERLTTV + LI +VSRKKR +
Sbjct: 62 LPKHMNGDLGERAQISIDFKERL-EKMMDVEVILVDERLTTVMMENQLIFADVSRKKRKE 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ LD
Sbjct: 121 VIDKLAAVQILQGYLD 136
>gi|271967371|ref|YP_003341567.1| endonuclease involved in recombination-like protein
[Streptosporangium roseum DSM 43021]
gi|270510546|gb|ACZ88824.1| endonuclease involved in recombination-like protein
[Streptosporangium roseum DSM 43021]
Length = 163
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+D+G+ RIG+A SDP A P + R + L+ L+ I E + ++GLP ++
Sbjct: 10 GVDVGSVRIGVARSDPSGLLATPVETVRRGR---GDLDRLAEIAAEYEVVEIVVGLPTSL 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G EG + R F + R +P +DERLTTV+AQQ L V K + VD
Sbjct: 67 SGREGQAAEAARDFATRISLRLAPIPVRLFDERLTTVTAQQGLRASGVKAKNQRAVVDQA 126
Query: 140 AAALILQEVLD 150
AA ++LQ LD
Sbjct: 127 AAIVLLQAALD 137
>gi|256829569|ref|YP_003158297.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM
4028]
gi|256578745|gb|ACU89881.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM
4028]
Length = 133
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
I ID G KRIGLA++ G F PF K T+ L +L+S I +E + A ++GLP
Sbjct: 3 ILGIDYGQKRIGLAMARQGMAF----PFKTLDKSTRDKLFADLMSIIESEGVEAIVLGLP 58
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+MNG E F + + R+ +P +E LT+ A+Q L + V +K + +
Sbjct: 59 LDMNGDETLTTRQVLNF-RDSLARRTELPIHLVNEALTSFDARQRLREAGVPERKHKEML 117
Query: 137 DSIAAALILQEVLD 150
D +AA IL+ L+
Sbjct: 118 DQMAAVCILETYLE 131
>gi|210633872|ref|ZP_03297887.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279]
gi|210159041|gb|EEA90012.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279]
Length = 142
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G R G+A+SD R A P L +V A + + GLP M
Sbjct: 5 ALDIGGARTGIAVSDRTGRVASPVKVLPAAEVEGVARTFRMVLEDYEPDVIVCGLPQTMA 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP+ R V I R +P F DERL++ A++IL + +S K+ KVD I+
Sbjct: 65 GEEGPQAARVRE-VAGRISRVTGLPVEFIDERLSSTEAKRILREQGLSEKQMRGKVDMIS 123
Query: 141 AALILQEVLD 150
A+L LQ LD
Sbjct: 124 ASLFLQAWLD 133
>gi|296535596|ref|ZP_06897777.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Roseomonas cervicalis ATCC 49957]
gi|296264112|gb|EFH10556.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Roseomonas cervicalis ATCC 49957]
Length = 159
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I+ + +L +L P+Q + +D G K IG+A++D A P L R K+ A E+
Sbjct: 1 MPIINLSELRAALSPDQRLIGLDPGKKIIGVALTDVTLMLASPYRGLARGKLAANAAEIG 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ E ++GLPL ++GS GP + + + + +P WDERL++ + +
Sbjct: 61 AIARREGAGGLVVGLPLGLDGSFGPAAQAAKDWTR-ALSEATGLPAALWDERLSSSAVNR 119
Query: 121 ILI 123
+LI
Sbjct: 120 MLI 122
>gi|162452820|ref|YP_001615187.1| putative Hollyday junction resolvase [Sorangium cellulosum 'So ce
56']
gi|161163402|emb|CAN94707.1| putative Hollyday junction resolvase [Sorangium cellulosum 'So ce
56']
Length = 163
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
IDLG R+G+A++D +AHPRP L + L + E I F++GLPL MNG
Sbjct: 33 IDLGKARVGVAVTDELGLYAHPRPLLDGRNRKALLEALAALARDEGITRFLVGLPLEMNG 92
Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
EGP + V DERLTTV A + L D VS +K ++VD AA
Sbjct: 93 DEGPAARRA-LAFAQALADAAGVEVELVDERLTTVEAARRLRDGGVSGRKSKERVDGAAA 151
Query: 142 ALILQEVLDR 151
AL+LQ LDR
Sbjct: 152 ALLLQAWLDR 161
>gi|58336756|ref|YP_193341.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
NCFM]
gi|227903317|ref|ZP_04021122.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
ATCC 4796]
gi|62900899|sp|Q5FLW4|RUVX_LACAC RecName: Full=Putative Holliday junction resolvase
gi|58254073|gb|AAV42310.1| hypothetical protein LBA0419 [Lactobacillus acidophilus NCFM]
gi|227868946|gb|EEJ76367.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
ATCC 4796]
Length = 142
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 11/137 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
+D+G+K +G+AISD L ++ +T L + ++ F++GL
Sbjct: 5 GLDVGSKTVGVAISDE---LGITAQKLETIQIDETKYNFGMRPLKKLVRQYDVDGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133
P NM+G+ G V ++A+ ++ K +P + DERLTT+ ++++LI D + RKKR
Sbjct: 62 PKNMDGTSGNSVARSKAY-GKRLEEKFNLPVYYSDERLTTIESRRVLIEDAGMHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137
>gi|310778165|ref|YP_003966498.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926]
gi|309747488|gb|ADO82150.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926]
Length = 139
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A SD FAHP + R K T+ + EN + ++G+P +++
Sbjct: 7 ALDVGDVRIGVARSDAMGMFAHPLEVIDRTK-TKAVKRVQELCRQENTKSIVVGIPKSLD 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSI 139
G E + R F+ + + + DERL+T+SA+++L + N + + + VD I
Sbjct: 66 GQEKRQAEKVREFIEKLNKSIEGLEIIEIDERLSTISAERMLNETTNKDARGKRKVVDKI 125
Query: 140 AAALILQEVLD 150
AAA+ILQ LD
Sbjct: 126 AAAIILQTYLD 136
>gi|294628345|ref|ZP_06706905.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292831678|gb|EFF90027.1| conserved hypothetical protein [Streptomyces sp. e14]
Length = 154
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DP A P + + V L + ++GLP ++
Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVEEYEPIEVVVGLPRSLK 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP RAF + VP DER+TTV+A Q L V KK +D A
Sbjct: 68 GGEGPAAVKVRAFAGELAKGVAPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127
Query: 141 AALILQEVL--DRISFLESSKG 160
A +ILQ+ L +R+S +G
Sbjct: 128 AVIILQQALESERVSGEPPGEG 149
>gi|257440576|ref|ZP_05616331.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii
A2-165]
gi|257196899|gb|EEU95183.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii
A2-165]
Length = 143
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D G R GLA+ DP P P + K + A E+ + ++GLPL
Sbjct: 3 ILAVDYGASRTGLAVCDPTEFLTTPITPQITLKARPKVAAEVCRIAQEQKAELIVVGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
NM+G+EG R +R + +++ +P WDER +T A IL ++ R
Sbjct: 63 NMDGTEGERAEKSRKLGKTL---QIWSGLPVRMWDERQSTCEAADILDEVGTFGAHRKAI 119
Query: 136 VDSIAAALILQEVL 149
+DS++A +IL++ L
Sbjct: 120 LDSVSATVILEDYL 133
>gi|297198337|ref|ZP_06915734.1| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083]
gi|297147063|gb|EDY58423.2| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083]
Length = 154
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DP A P + + V L + ++GLP ++
Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVVGLPRSLK 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R FV + VP DER+TTV+A Q L V KK +D A
Sbjct: 68 GGEGPAAVKVRGFVQELARGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127
Query: 141 AALILQEVL--DRISFLESSKG 160
A +ILQ+ L +R+S +G
Sbjct: 128 AVIILQQALESERVSGKAPGEG 149
>gi|329938947|ref|ZP_08288321.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus
M045]
gi|329301832|gb|EGG45725.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus
M045]
Length = 154
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 63/140 (45%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DP A P + + V L + ++GLP ++
Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVVGLPRSLK 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R F + VP DER+TTV+A Q L V KK +D A
Sbjct: 68 GGEGPAAVKVRGFAQELAGLIAPVPVRLLDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127
Query: 141 AALILQEVLDRISFLESSKG 160
A +ILQ+ L+ SS G
Sbjct: 128 AVIILQQALESERVSGSSPG 147
>gi|323465942|gb|ADX69629.1| Putative Holliday junction resolvase [Lactobacillus helveticus H10]
Length = 142
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
+D+G+K +G+A+SD L K+ +T L + + F++GL
Sbjct: 5 GLDIGSKTVGVAVSDE---LGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133
P NM+G+ G V ++A+ ++ K +P + DERLTT+ ++++L+ D + RKKR
Sbjct: 62 PKNMDGTSGASVARSKAY-GKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137
>gi|229815210|ref|ZP_04445546.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM
13280]
gi|229809220|gb|EEP44986.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM
13280]
Length = 142
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G R G+A+SD R A P L +V A + + GLP M+
Sbjct: 5 ALDIGGTRTGIAVSDRTGRVAMPLKVLPACEVEGMARSFRMILEDHEPDVLVCGLPQTMS 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP+ R V I +P F DERLT+ A++IL + ++ K+ KVD I+
Sbjct: 65 GEEGPQAEHIRE-VAGRIAAATGLPLEFIDERLTSTEAKRILREQGLNEKQMRGKVDMIS 123
Query: 141 AALILQEVLD 150
A+L LQ LD
Sbjct: 124 ASLFLQAWLD 133
>gi|260102889|ref|ZP_05753126.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|260083302|gb|EEW67422.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|328462755|gb|EGF34644.1| Holliday junction resolvase-like protein [Lactobacillus helveticus
MTCC 5463]
Length = 142
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
+D+G+K +G+A+SD L K+ +T L + + F++GL
Sbjct: 5 GLDIGSKTVGVAVSDE---LGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133
P NM+G+ G V ++A+ ++ K +P + DERLTT+ ++++L+ D + RKKR
Sbjct: 62 PKNMDGTSGASVTRSKAY-GKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137
>gi|269216087|ref|ZP_06159941.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122]
gi|269130346|gb|EEZ61424.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122]
Length = 171
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+AISDP R A P L +V A + A + GLP +
Sbjct: 23 ALDIGDARIGIAISDPAGRVASPLKVLPAAEVLGHAASFRMLVEDWMPDALVCGLPFTLA 82
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G +GP+ S + I + +P F DERL++ A++ L + + KVD IA
Sbjct: 83 GEQGPQAASLKERAQR-IAKACDLPLYFSDERLSSSEAKRFLREGGYDERAMRGKVDMIA 141
Query: 141 AALILQEVLD 150
A++ LQ LD
Sbjct: 142 ASIFLQSWLD 151
>gi|315037653|ref|YP_004031221.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
GRL 1112]
gi|325956138|ref|YP_004286748.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
30SC]
gi|312275786|gb|ADQ58426.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
GRL 1112]
gi|325332703|gb|ADZ06611.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
30SC]
gi|327182946|gb|AEA31393.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
GRL 1118]
Length = 142
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
+D+G+K +G+A+SD L ++ +T L + + F++GL
Sbjct: 5 GLDVGSKTVGVAVSD---ELGITAQKLETIQIDETKYNFGMRPLKKLVRQYDPEGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133
P NM+G+ G V ++A+ ++ K +P + DERLTT+ +Q++L+ D + RKKR
Sbjct: 62 PKNMDGTSGSSVARSKAY-GKRLEEKFGLPVYYSDERLTTIESQRVLVEDAGIHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137
>gi|297155786|gb|ADI05498.1| Holliday junction resolvase-like protein [Streptomyces
bingchenggensis BCW-1]
Length = 154
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 62/130 (47%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DP A P + + + L + + ++GLP +++
Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAAVVEEYEPIEVVVGLPRSLS 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R F R VP DER+TTV+A Q L V+ KK VD A
Sbjct: 68 GREGPAAAKVRTFAREFARRVAPVPVRLVDERMTTVTAAQGLRASGVTSKKGRSVVDQAA 127
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 128 AVVILQSALE 137
>gi|239907946|ref|YP_002954687.1| putative holliday junction resolvase [Desulfovibrio magneticus
RS-1]
gi|239797812|dbj|BAH76801.1| putative holliday junction resolvase [Desulfovibrio magneticus
RS-1]
Length = 147
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I +ID G R+GLA+ PG A P + + LL+ I +N +IG P
Sbjct: 2 EKILAIDYGQARVGLAVCAPGSEIAFPHSTIAWETRDDLFARLLAVIEEQNPGRIVIGYP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
G EG R F + R+ VP + DE +T A + L + +S ++ + KV
Sbjct: 62 ARAGGDEGLTGRQVRNFAARLA-RRTAVPLAYADEAHSTEEAAERLREAGLSGRELLAKV 120
Query: 137 DSIAAALILQEVL--DRISFLESSKG 160
D++AAA+IL+ L + F SS G
Sbjct: 121 DAMAAAVILERYLRGGELCFEPSSLG 146
>gi|312195531|ref|YP_004015592.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c]
gi|311226867|gb|ADP79722.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c]
Length = 197
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
+D+GT RIG+++SDP A P L R + L L+ + E A A ++GLP+ +
Sbjct: 49 GVDVGTVRIGVSVSDPDGVLALPIGTLRRDVSDNSDLAQLAELVHERRAVAVVVGLPMTL 108
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G EG R + ++ R +P DERLTT +A + + + +S + R VD
Sbjct: 109 SGEEGLAAQRIRQYAQSLSARVAPIPVRLVDERLTTAAAHRRMAERGLSSRARRGLVDQE 168
Query: 140 AAALILQEVLD 150
AA ILQ LD
Sbjct: 169 AAVQILQHALD 179
>gi|289643075|ref|ZP_06475206.1| Holliday junction resolvase YqgF [Frankia symbiont of Datisca
glomerata]
gi|289507119|gb|EFD28087.1| Holliday junction resolvase YqgF [Frankia symbiont of Datisca
glomerata]
Length = 164
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA-FIIGLPLNM 79
ID+GT RIG+A SDP R A P L R + L+ ++ I + A ++GLP +
Sbjct: 10 GIDVGTVRIGVAASDPDARIAFPVTTLRRGTRLNSDLDEIAMIVRDRHAVEVVVGLPTRL 69
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G GP R + + R VP DERLTTV A + + + + + R VD
Sbjct: 70 SGLPGPAARKAREYADLLAARVAPVPVRLVDERLTTVVAHRRMAERGLRARDRRAVVDQE 129
Query: 140 AAALILQEVLD 150
AA ILQ LD
Sbjct: 130 AAVQILQSALD 140
>gi|145594372|ref|YP_001158669.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440]
gi|145303709|gb|ABP54291.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440]
Length = 153
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFIIG 74
+D+G R+G+A SDP A P L R + V EL + +T ++G
Sbjct: 11 GVDVGQVRVGVARSDPHGVLATPLVTLARDRAVAPEAVPSDMAELAALVTEHEAVEVVVG 70
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP+N+ G +GP +A+V +++ VP DER++TV A + L + V +++
Sbjct: 71 LPVNLAGRQGPAAVHVQAYVGRLVEVISPVPVTLADERMSTVVASRRLAERGVRGRRQRA 130
Query: 135 KVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 131 VVDQAAAVEILQSWLD 146
>gi|169334466|ref|ZP_02861659.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM
17244]
gi|169259183|gb|EDS73149.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM
17244]
Length = 144
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
I ++D G RIG+A+SD A + R K + +E + +I + I+G PL
Sbjct: 5 ILALDYGDSRIGVAVSDALHITAQGICVIKRTKNIEEDIEKIKKYIKEYDTGLVILGHPL 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
N++G G R T F +++ K+ +P WDERL+T A++ L V+ +K+ + +D
Sbjct: 65 NLSGERGTRALVTEEFC-DILKEKIDIPVELWDERLSTKEAERALEAGGVNWRKKREVID 123
Query: 138 SIAAALILQEVLD 150
+AA +IL LD
Sbjct: 124 MMAAQIILSSYLD 136
>gi|257468001|ref|ZP_05632097.1| DNA integration/recombination/invertion protein [Fusobacterium
ulcerans ATCC 49185]
gi|317062287|ref|ZP_07926772.1| DNA integration/recombination/inversion protein [Fusobacterium
ulcerans ATCC 49185]
gi|313687963|gb|EFS24798.1| DNA integration/recombination/inversion protein [Fusobacterium
ulcerans ATCC 49185]
Length = 139
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+D+G RIG+A SD A P + RKK T+ + EN A ++G+P +++
Sbjct: 7 SLDVGDVRIGVAKSDIMGIVATPLEVIDRKK-TKAVKRIKELCIQENTKALVVGIPKSLD 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137
G+E + R F+ + + + DERLTTVSA ++L + N +K ++K VD
Sbjct: 66 GTEKRQAEKVREFIAKLNKEIEGLEIIEVDERLTTVSADRMLNESN--KKGALEKRKVVD 123
Query: 138 SIAAALILQEVLD 150
IAAA+ILQ LD
Sbjct: 124 KIAAAIILQTFLD 136
>gi|29375778|ref|NP_814932.1| Holliday junction resolvase-like protein [Enterococcus faecalis
V583]
gi|227518457|ref|ZP_03948506.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX0104]
gi|227552987|ref|ZP_03983036.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
HH22]
gi|229546119|ref|ZP_04434844.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX1322]
gi|229550308|ref|ZP_04439033.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
ATCC 29200]
gi|255973080|ref|ZP_05423666.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255976119|ref|ZP_05426705.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256618786|ref|ZP_05475632.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256762206|ref|ZP_05502786.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256852851|ref|ZP_05558221.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256958695|ref|ZP_05562866.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256962207|ref|ZP_05566378.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256965397|ref|ZP_05569568.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257077951|ref|ZP_05572312.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|257082840|ref|ZP_05577201.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257085538|ref|ZP_05579899.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257086556|ref|ZP_05580917.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257089613|ref|ZP_05583974.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257415820|ref|ZP_05592814.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
gi|257419029|ref|ZP_05596023.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257422886|ref|ZP_05599876.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293383234|ref|ZP_06629150.1| putative Holliday junction resolvase [Enterococcus faecalis R712]
gi|293387611|ref|ZP_06632157.1| putative Holliday junction resolvase [Enterococcus faecalis S613]
gi|294781118|ref|ZP_06746468.1| RNAse YqgF [Enterococcus faecalis PC1.1]
gi|300859927|ref|ZP_07106015.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11]
gi|307268684|ref|ZP_07550053.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248]
gi|307273508|ref|ZP_07554752.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855]
gi|307274473|ref|ZP_07555656.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134]
gi|307279022|ref|ZP_07560080.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860]
gi|307288496|ref|ZP_07568482.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109]
gi|307291186|ref|ZP_07571071.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411]
gi|312899674|ref|ZP_07758998.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0470]
gi|312903954|ref|ZP_07763123.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0635]
gi|312907178|ref|ZP_07766169.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 512]
gi|312909797|ref|ZP_07768645.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 516]
gi|312951035|ref|ZP_07769943.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0102]
gi|62901023|sp|Q836B2|RUVX_ENTFA RecName: Full=Putative Holliday junction resolvase
gi|29343239|gb|AAO81002.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
V583]
gi|227074135|gb|EEI12098.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX0104]
gi|227177878|gb|EEI58850.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
HH22]
gi|229304571|gb|EEN70567.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
ATCC 29200]
gi|229308643|gb|EEN74630.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX1322]
gi|255964098|gb|EET96574.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255968991|gb|EET99613.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256598313|gb|EEU17489.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256683457|gb|EEU23152.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256711310|gb|EEU26348.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256949191|gb|EEU65823.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256952703|gb|EEU69335.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256955893|gb|EEU72525.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256985981|gb|EEU73283.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|256990870|gb|EEU78172.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256993568|gb|EEU80870.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256994586|gb|EEU81888.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256998425|gb|EEU84945.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257157648|gb|EEU87608.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257160857|gb|EEU90817.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257164710|gb|EEU94670.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291079412|gb|EFE16776.1| putative Holliday junction resolvase [Enterococcus faecalis R712]
gi|291082943|gb|EFE19906.1| putative Holliday junction resolvase [Enterococcus faecalis S613]
gi|294451796|gb|EFG20248.1| RNAse YqgF [Enterococcus faecalis PC1.1]
gi|300850745|gb|EFK78494.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11]
gi|306497840|gb|EFM67372.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411]
gi|306500571|gb|EFM69902.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109]
gi|306504147|gb|EFM73359.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860]
gi|306508867|gb|EFM77954.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134]
gi|306509847|gb|EFM78873.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855]
gi|306514996|gb|EFM83542.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248]
gi|310626206|gb|EFQ09489.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 512]
gi|310630990|gb|EFQ14273.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0102]
gi|310632674|gb|EFQ15957.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0635]
gi|311289755|gb|EFQ68311.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 516]
gi|311293180|gb|EFQ71736.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0470]
gi|315027757|gb|EFT39689.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX2137]
gi|315029152|gb|EFT41084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX4000]
gi|315031532|gb|EFT43464.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0017]
gi|315035052|gb|EFT46984.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0027]
gi|315145514|gb|EFT89530.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX2141]
gi|315147685|gb|EFT91701.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX4244]
gi|315151387|gb|EFT95403.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0012]
gi|315154072|gb|EFT98088.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0031]
gi|315157359|gb|EFU01376.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0043]
gi|315158422|gb|EFU02439.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0312]
gi|315162577|gb|EFU06594.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0645]
gi|315165420|gb|EFU09437.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1302]
gi|315166586|gb|EFU10603.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1341]
gi|315575738|gb|EFU87929.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0309B]
gi|315578303|gb|EFU90494.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0630]
gi|315579818|gb|EFU92009.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0309A]
gi|327534828|gb|AEA93662.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
OG1RF]
gi|329576586|gb|EGG58091.1| RNAse H domain protein, YqgF family [Enterococcus faecalis TX1467]
Length = 140
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
I +D+G++ +G+A+SD A + + + L + + F++GLP
Sbjct: 3 IMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN S GPR ++ A+ + I +P + DERLTTV A++ L++ + SR KR +
Sbjct: 63 KNMNNSIGPRAEASMAY-GDKIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 122 IDKLAAVMILQNYLD 136
>gi|328881149|emb|CCA54388.1| putative Holliday junction resolvase [Streptomyces venezuelae ATCC
10712]
Length = 156
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A DP A P + + V L + ++GLP +++
Sbjct: 10 AVDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRLRQIVEEYEPIEVVVGLPRSLS 69
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP RAF M VP DER+TTV+A Q L V KK +D A
Sbjct: 70 GREGPAATKVRAFAGEMAKGIAPVPVRLVDERMTTVTATQGLRASGVKAKKGRSVIDQAA 129
Query: 141 AALILQEVL--DRISFLESSKG 160
A +ILQ L +R+S +G
Sbjct: 130 AVIILQNALEAERVSGNPPGEG 151
>gi|295425853|ref|ZP_06818533.1| crossover junction endodeoxyribonuclease [Lactobacillus
amylolyticus DSM 11664]
gi|295064456|gb|EFG55384.1| crossover junction endodeoxyribonuclease [Lactobacillus
amylolyticus DSM 11664]
Length = 142
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+AISD G + + + L I E + A F++GLP N
Sbjct: 5 GLDIGSKTVGVAISDELGITAQKLETIPIDESKFNFGMRPLKKIVREYDPAGFVLGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136
M+G+ G V ++A+ + +K +P + DERLTTV ++++L++ RKKR Q +
Sbjct: 65 MDGTSGHSVDRSKAYGERL-KKKFNLPVYYDDERLTTVESRRVLVEEAGVHDRKKRKQVI 123
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 124 DQMAAVLILQNYLD 137
>gi|148284294|ref|YP_001248384.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi
str. Boryong]
gi|167012743|sp|A5CCV6|RUVX_ORITB RecName: Full=Putative Holliday junction resolvase
gi|146739733|emb|CAM79564.1| holliday junction resolvase [Orientia tsutsugamushi str. Boryong]
Length = 157
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I I + +++ + I ID G K++G+AIS+ A P ++ + ++
Sbjct: 1 MIINSISEFLQAADIKKQILGIDFGEKKVGVAISNIEHTVAMPLQTILATNQDRVN-KIQ 59
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
NI A +IGLP ++G+E + H + F N + K+ +P DERLT+ +A
Sbjct: 60 EIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFA-NKLANKLLLPIFLCDERLTSKAANN 118
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+L N+ RK R D +AA++IL+ L R+
Sbjct: 119 LLKIGNIKRKVRNAIDDRVAASIILEGALKRM 150
>gi|302550142|ref|ZP_07302484.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes
DSM 40736]
gi|302467760|gb|EFL30853.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes
DSM 40736]
Length = 154
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DP A P + + + L + ++GLP ++
Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAQRRLKGLVEEYEPIEVVVGLPRSLK 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R FV + VP DER+TTV+A Q L V KK +D A
Sbjct: 68 GGEGPAAVKVRGFVQELARMISPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 127
Query: 141 AALILQEVL--DRISFLESSKG 160
A +ILQ+ L +R+S +G
Sbjct: 128 AVVILQQALESERVSGKAPGEG 149
>gi|329942939|ref|ZP_08291718.1| hypothetical protein G5Q_0615 [Chlamydophila psittaci Cal10]
gi|332287530|ref|YP_004422431.1| Holliday junction resolvase-like protein [Chlamydophila psittaci
6BC]
gi|313848107|emb|CBY17106.1| putative Holliday junction resolvase [Chlamydophila psittaci RD1]
gi|325506817|gb|ADZ18455.1| Holliday junction resolvase-like protein [Chlamydophila psittaci
6BC]
gi|328815199|gb|EGF85188.1| hypothetical protein G5Q_0615 [Chlamydophila psittaci Cal10]
gi|328914779|gb|AEB55612.1| conserved hypothetical protein TIGR00250 [Chlamydophila psittaci
6BC]
Length = 150
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 8/140 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+D G KRIGLA + + P F+ K + +LL I E N++ ++G P+ M
Sbjct: 12 GVDYGEKRIGLAYASSPLCISLPIGFIATGKTLEATAKLLVGIIQERNVSTVVLGNPIPM 71
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDS 138
+ + + +++ V + WDERL++ A+++L D +SRKKR K DS
Sbjct: 72 QKGQKSALQEDILKLSSLLQEFCPVEVILWDERLSSAEAERMLKGDCGLSRKKRKGKTDS 131
Query: 139 IAAALILQEVLDRISFLESS 158
IAA LIL SFLESS
Sbjct: 132 IAANLIL------TSFLESS 145
>gi|256379271|ref|YP_003102931.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827]
gi|255923574|gb|ACU39085.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827]
Length = 170
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
+D+G R+G+A+SDPG A P L R + L+ L+ ++ ++GLP +
Sbjct: 19 GVDVGAVRVGVALSDPGAFLATPLVTLSRDEKNGRDLDDLVGLAAEHDVVEVVVGLPRTL 78
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G GP + A+ + +R +P DERLTTV+A ++L V KK+ VD
Sbjct: 79 AGKHGPAAQAATAYAAALAERVAPLPVRLTDERLTTVTASRVLAQRGVRGKKQRAVVDQA 138
Query: 140 AAALILQEVLD 150
AA ILQ LD
Sbjct: 139 AAVEILQSWLD 149
>gi|217967412|ref|YP_002352918.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724]
gi|226725514|sp|B8E227|RUVX_DICTD RecName: Full=Putative Holliday junction resolvase
gi|217336511|gb|ACK42304.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724]
Length = 141
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +ID G K IGLAISDP R A K L I N++ ++G P++
Sbjct: 3 VLAIDWGEKYIGLAISDPLRIIAQGLDVWEIKDEEDFVNRLKKLIKEYNVSEIVLGYPIS 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ G E + +V I V +P F DER TT+ A+++L++ ++ R+ R +
Sbjct: 63 LRGHENEKTKKI-EYVAERIKTVVNLPIKFVDERFTTMEAERVLLEGDIKRRDRKLLKNK 121
Query: 139 IAAALILQEVLDRISF 154
AA +ILQ+ LD +S
Sbjct: 122 QAAVIILQKYLDSLSL 137
>gi|29833393|ref|NP_828027.1| hypothetical protein SAV_6851 [Streptomyces avermitilis MA-4680]
gi|62901021|sp|Q827S3|RUVX_STRAW RecName: Full=Putative Holliday junction resolvase
gi|29610516|dbj|BAC74562.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 156
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A DP A P + + V L + ++GLP ++
Sbjct: 10 AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVLGLPRSLK 69
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP RAF + VP DER+TTV+A Q L V KK +D A
Sbjct: 70 GGEGPAAVKVRAFAQELARVIAPVPVRLMDERMTTVTASQGLRASGVKSKKGRSVIDQAA 129
Query: 141 AALILQEVL--DRISFLESSKG 160
A +ILQ+ L +R+S +G
Sbjct: 130 AVIILQQALESERVSGKAPGEG 151
>gi|283850501|ref|ZP_06367789.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B]
gi|283574072|gb|EFC22044.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B]
Length = 152
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
I +ID G R+GLA+SDP R A P F T+ AL ELL IT++ IAA ++G P
Sbjct: 4 ILAIDYGQARVGLAVSDPEGRMAFP--FATVAWQTRDALFRELLDVITSQGIAAIVVGYP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
G E R FV + R+ +P V DE +T A + L + +S +V
Sbjct: 62 ARAGGDESLTGRQVRKFVARL-SRRTDLPIVLVDEAHSTEEAAEQLREAGLSGPALSARV 120
Query: 137 DSIAAALILQEVL 149
D+ AAA+IL L
Sbjct: 121 DAQAAAVILTRYL 133
>gi|218259649|ref|ZP_03475312.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii
DSM 18315]
gi|218224965|gb|EEC97615.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii
DSM 18315]
Length = 140
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 11/143 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR GLA++D + A+ + ++T+ L +++ E + F++GLP
Sbjct: 4 IIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTKF---LADYVSREPVERFVVGLPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN + AFV ++ +P ++DER T+V A + ++D + +KKR K V
Sbjct: 61 MNNELSENMKYVEAFVAHLKRTIPDIPVEYYDERFTSVLAHKAMLDGGLKKKKRQDKGLV 120
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D I+A +ILQ S+LE+ K
Sbjct: 121 DEISAVIILQ------SYLENKK 137
>gi|325105793|ref|YP_004275447.1| Holliday junction resolvase YqgF [Pedobacter saltans DSM 12145]
gi|324974641|gb|ADY53625.1| Holliday junction resolvase YqgF [Pedobacter saltans DSM 12145]
Length = 138
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I S D GTKRIG+A++DP + A+ + K + + L ++ TE++ F++G P
Sbjct: 4 IMSFDFGTKRIGIAVTDPMKIIANGLTTVHPKDIVEF---LKKYLLTESVETFVVGEPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
M+G++ RAFV+ + +P DER T+ A ++ +K R K V
Sbjct: 61 MDGTDSQSAVHVRAFVNLLKKNFSEIPVEMMDERFTSKMASAAILQSGAKKKTRQDKALV 120
Query: 137 DSIAAALILQEVLDRI 152
D+++A +ILQ ++++
Sbjct: 121 DTVSATIILQSYMEKL 136
>gi|73667182|ref|YP_303198.1| hypothetical protein Ecaj_0565 [Ehrlichia canis str. Jake]
gi|146325572|sp|Q3YRQ5|RUVX_EHRCJ RecName: Full=Putative Holliday junction resolvase
gi|72394323|gb|AAZ68600.1| Conserved hypothetical protein 250 [Ehrlichia canis str. Jake]
Length = 156
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I++ VK + + I +D G K+IG+A+SD A P +++ + L +
Sbjct: 6 IDEFVKVIDKKKRIIGLDFGEKKIGIALSDKTNLVAIPYSVYIKRSTRKDLGSLYNIFVE 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
N+ + +IG P+ ++G E + N I K + DER +T A ++
Sbjct: 66 NNVGSMVIGWPIELSGIESELCQKV-VLLANRIIAKYKINIYLHDERYSTAMATRVAKLA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
N+ RK+ D IAA LILQ+VLD
Sbjct: 125 NIKRKESQSIDDKIAAMLILQQVLD 149
>gi|194334951|ref|YP_002016811.1| Holliday junction resolvase YqgF [Prosthecochloris aestuarii DSM
271]
gi|226731637|sp|B4S5W7|RUVX_PROA2 RecName: Full=Putative Holliday junction resolvase
gi|194312769|gb|ACF47164.1| Holliday junction resolvase YqgF [Prosthecochloris aestuarii DSM
271]
Length = 142
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 5/135 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D GTKRIGLA +DP + FA P + + + E+ + I +IG PLN
Sbjct: 9 IIAVDYGTKRIGLAKTDPLQLFAQPVGTFSEEALFRAIKEISGL---DGIGRILIGYPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
+GS AF + + +P +E ++ SA QILI+ +SRKKR +K +
Sbjct: 66 ADGSHNRMTDIVDAFAARVHNEFPDIPLELVNEHGSSRSAGQILINSGLSRKKRHEKGRL 125
Query: 137 DSIAAALILQEVLDR 151
DS +A ++LQ LD+
Sbjct: 126 DSASACVLLQAHLDK 140
>gi|218294685|ref|ZP_03495539.1| Holliday junction resolvase YqgF [Thermus aquaticus Y51MC23]
gi|218244593|gb|EED11117.1| Holliday junction resolvase YqgF [Thermus aquaticus Y51MC23]
Length = 135
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G RIGLA+ + G FA R +LVR+ + + LL F+ E +A I+GLPL
Sbjct: 3 LGALDVGEARIGLAVGEEGLPFAFGRGYLVRRSLEEDVEALLDFVRREGLAKLIVGLPLR 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ E + V + R V V WDER TT +A L ++ K+D
Sbjct: 63 TDLKESAQAKRVLPLVEALRARGVEVE--LWDERYTTKAAMARLRHAPRRVREDKGKLDE 120
Query: 139 IAAALILQEVLDR 151
++A ++L+ L R
Sbjct: 121 MSAVVLLEGYLAR 133
>gi|320528373|ref|ZP_08029535.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei
F0204]
gi|320131287|gb|EFW23855.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei
F0204]
Length = 139
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 2/132 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
+DLG+ G++ SD G + AL+ +L + E ++GLPL +
Sbjct: 6 GLDLGSVTCGVSFSDTGFIARTIETIRFKPDDYNMALDKVLDIVDREKPDVIVLGLPLLL 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
N GPR F +++++ +P DER TT A+ IL++ +VSRKKR +K+D +
Sbjct: 66 NDDVGPRAQICLEF-GEVLEQESGIPVKMQDERFTTAVAESILLEADVSRKKRKKKIDQL 124
Query: 140 AAALILQEVLDR 151
AA ILQ LDR
Sbjct: 125 AAVQILQTWLDR 136
>gi|161506985|ref|YP_001576939.1| putative DNA recombination protein [Lactobacillus helveticus DPC
4571]
gi|172048187|sp|A8YTJ2|RUVX_LACH4 RecName: Full=Putative Holliday junction resolvase
gi|160347974|gb|ABX26648.1| putative DNA recombination protein [Lactobacillus helveticus DPC
4571]
Length = 142
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
+D+G+K +G+++SD L K+ +T L + + F++GL
Sbjct: 5 GLDIGSKTVGVSVSDE---LGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133
P NM+G+ G V ++A+ ++ K +P + DERLTT+ ++++L+ D + RKKR
Sbjct: 62 PKNMDGTSGASVARSKAY-GKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137
>gi|85057698|ref|YP_456614.1| Holliday junction resolvase [Aster yellows witches'-broom
phytoplasma AYWB]
gi|146325552|sp|Q2NJ58|RUVX_AYWBP RecName: Full=Putative Holliday junction resolvase
gi|84789803|gb|ABC65535.1| Holliday junction resolvase [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 151
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIG 74
N +DLG K +G+A+S G + + F K Q L I+ I I+G
Sbjct: 6 NNASLGLDLGEKTLGIALSQTGIIAQNLKTIFFDTHKYDQLIAPLQKIISQYQIKKIILG 65
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +MN G + + F + ++ V + WDERL+TV A QIL N + K +Q
Sbjct: 66 YPKHMNNDIGIKAKISNYFKKTLENKFGQVKVILWDERLSTVQAIQILKTNNKKKGKILQ 125
Query: 135 KVDSIAAALILQEVLDRISF 154
D IAA++ILQ LD I
Sbjct: 126 MKDEIAASIILQNYLDYIKL 145
>gi|295106658|emb|CBL04201.1| conserved hypothetical protein TIGR00250 [Gordonibacter pamelaeae
7-10-1-b]
Length = 136
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G R+G+A+ DPG R A P L +V A + + GLP
Sbjct: 3 IMALDIGETRVGVAVCDPGERVASPVCVLPAAEVLSCAKPFRRLLEDWEPELLLCGLPYT 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ G EGP+ + + + +P F DERL++ A++ L + + ++ K+D
Sbjct: 63 LAGQEGPQAARI-RAAADAVTKACGIPHEFADERLSSQEAKRSLREKGLGEREMRGKIDM 121
Query: 139 IAAALILQEVLD 150
IAA+L LQ LD
Sbjct: 122 IAASLFLQAWLD 133
>gi|154490275|ref|ZP_02030536.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC
43184]
gi|154089167|gb|EDN88211.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC
43184]
Length = 140
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 11/143 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR GLA++D + A+ + ++T+ L +++ E + F++GLP
Sbjct: 4 IIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTRF---LADYVSREPVERFVVGLPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN + AFV ++ +P ++DER T+V A + ++D + +KKR K V
Sbjct: 61 MNNELSENMRYVEAFVTHLKRTIPDIPVEYYDERFTSVLAHKAMLDGGLKKKKRQDKGLV 120
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D I+A +ILQ S+LE+ K
Sbjct: 121 DEISAVIILQ------SYLENKK 137
>gi|21220001|ref|NP_625780.1| Holliday junction resolvase-like protein [Streptomyces coelicolor
A3(2)]
gi|32130071|sp|Q9KXQ0|RUVX_STRCO RecName: Full=Putative Holliday junction resolvase
gi|8249959|emb|CAB93380.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 167
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A DP A P + + V L + ++GLP ++
Sbjct: 21 AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVAEYEPIEVVVGLPRSLK 80
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R F + VP DER+TTV+A Q L V KK +D A
Sbjct: 81 GGEGPAAAKVRRFTQELAKGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 140
Query: 141 AALILQEVL--DRISFLESSKG 160
A +ILQ+ L +R+S +G
Sbjct: 141 AVIILQQALESERVSGRPPGEG 162
>gi|315169885|gb|EFU13902.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1342]
Length = 140
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
I +D+G++ +G+A+SD A + + + L + + F++GLP
Sbjct: 3 IMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMN S GPR ++ A+ + I +P + DERLTTV A++ L++ + SR KR +
Sbjct: 63 KNMNNSIGPRAEASIAY-GDKIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 122 IDKLAAVMILQNYLD 136
>gi|315655397|ref|ZP_07908297.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333]
gi|315490337|gb|EFU79962.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333]
Length = 152
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A S G A P L + ELL+ IT N AA +GLP M+
Sbjct: 8 AIDVGKARIGVARSVSGTSLALPVETLQVQTDGSELDELLAIITESNPAAVFVGLPKLMS 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG R++ ++ R +P DERL++ A L + V +++ + VD +A
Sbjct: 68 GKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQVGVCARRQKEMVDQLA 127
Query: 141 AALILQEVLDRIS 153
A IL L+ ++
Sbjct: 128 AVTILTRALETLT 140
>gi|194337777|ref|YP_002019571.1| Holliday junction resolvase YqgF [Pelodictyon phaeoclathratiforme
BU-1]
gi|194310254|gb|ACF44954.1| Holliday junction resolvase YqgF [Pelodictyon phaeoclathratiforme
BU-1]
Length = 145
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 5/140 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L P + + +ID GTKRIG+A SDP FA P R +++ L + I +++IA I
Sbjct: 3 LTPKKRVVAIDYGTKRIGMAQSDPLWLFAQPVGTFDRAGLSKA---LGTMIQSDDIALVI 59
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G PL+ NG + F+ + + + DE ++ A+ IL+ SRK R
Sbjct: 60 VGYPLSENGEKNAMTGVIDRFLETLHEEFPQLRIETLDEHHSSKDARSILVASGKSRKVR 119
Query: 133 IQK--VDSIAAALILQEVLD 150
QK VDS AA ++L+E L+
Sbjct: 120 QQKGRVDSAAACILLREYLE 139
>gi|108799314|ref|YP_639511.1| Holliday junction resolvase-like protein [Mycobacterium sp. MCS]
gi|119868430|ref|YP_938382.1| Holliday junction resolvase-like protein [Mycobacterium sp. KMS]
gi|122977019|sp|Q1B9H9|RUVX_MYCSS RecName: Full=Putative Holliday junction resolvase
gi|167012737|sp|A1UFI4|RUVX_MYCSK RecName: Full=Putative Holliday junction resolvase
gi|108769733|gb|ABG08455.1| Holliday junction resolvase YqgF [Mycobacterium sp. MCS]
gi|119694519|gb|ABL91592.1| Holliday junction resolvase YqgF [Mycobacterium sp. KMS]
Length = 169
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
ID+G+ R+G+A SDP A P + R+K + + L+ + TE ++GLP +
Sbjct: 24 GIDVGSVRVGVATSDPDGVLATPVETVRREKSSDRHVRRLAQLVTELEAVEVVVGLPRTL 83
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
GP H + R VP DERLTTVSAQ+ L + V K + +D +
Sbjct: 84 ADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVSAQRSLREAGVRAKGQRAMIDQV 143
Query: 140 AAALILQEVLD 150
AA ILQ LD
Sbjct: 144 AAVGILQSWLD 154
>gi|288925814|ref|ZP_06419745.1| Holliday junction resolvase [Prevotella buccae D17]
gi|315608231|ref|ZP_07883221.1| Holliday junction resolvase [Prevotella buccae ATCC 33574]
gi|288337469|gb|EFC75824.1| Holliday junction resolvase [Prevotella buccae D17]
gi|315250012|gb|EFU30011.1| Holliday junction resolvase [Prevotella buccae ATCC 33574]
Length = 139
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74
I SID G KR GLA++DP + A+ T +++EL F+ T E + +IG
Sbjct: 3 IVSIDYGKKRTGLAVTDPLQIIANGL-------ATVSSVELFGFLETYVKKEGVERIVIG 55
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P MNG + F + +P ++DER T+V A + +ID V +K R +
Sbjct: 56 RPTQMNGQPSENLVRVENFYNRWCKAHPEIPIEYYDERFTSVIAHRAMIDGGVKKKVRQE 115
Query: 135 K---VDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 116 NKGLVDEISATIILQDYM 133
>gi|229820506|ref|YP_002882032.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333]
gi|229566419|gb|ACQ80270.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333]
Length = 163
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G+ R+G+A DP A P L R+ E+ + ++ +IGLP ++
Sbjct: 4 GVDVGSVRVGVARCDPSGVIATPVTTLARRGKRGGVAEIAGLVREDSAIEVVIGLPRALD 63
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG RA+ + VP DERL+TV+A + + + + ++ + VD A
Sbjct: 64 GHEGSSARQARAYAGQVARAVEPVPVRLVDERLSTVAAHRAMHEAGRAGRRHREVVDQAA 123
Query: 141 AALILQEVLD 150
A +ILQ LD
Sbjct: 124 AVVILQSALD 133
>gi|295112760|emb|CBL31397.1| conserved hypothetical protein TIGR00250 [Enterococcus sp. 7L76]
gi|323480436|gb|ADX79875.1| conserved hypothetical protein [Enterococcus faecalis 62]
Length = 137
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78
+D+G++ +G+A+SD A + + + L + + F++GLP N
Sbjct: 2 GLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLPKN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MN S GPR ++ A+ + I +P + DERLTTV A++ L++ + SR KR + +D
Sbjct: 62 MNNSIGPRAEASMAY-GDKIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKVID 120
Query: 138 SIAAALILQEVLD 150
+AA +ILQ LD
Sbjct: 121 KLAAVMILQNYLD 133
>gi|224282911|ref|ZP_03646233.1| Putative endonuclease for recombination [Bifidobacterium bifidum
NCIMB 41171]
Length = 145
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 13/140 (9%)
Query: 24 LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNMNGS 82
+G R+GLA+SDP FAHP + + AL+ +++ I E + ++GLPL ++G+
Sbjct: 1 MGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQLDGT 60
Query: 83 EGPRVHSTRAF-------VHNMIDRK----VYVPFV-FWDERLTTVSAQQILIDMNVSRK 130
EG R + + N++D ++P V DERLTTVSA + L++ + +
Sbjct: 61 EGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQLGSR 120
Query: 131 KRIQKVDSIAAALILQEVLD 150
+ VD +A +ILQ LD
Sbjct: 121 RHRPVVDQQSAVVILQTALD 140
>gi|189501335|ref|YP_001960805.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1]
gi|226725499|sp|B3EPT4|RUVX_CHLPB RecName: Full=Putative Holliday junction resolvase
gi|189496776|gb|ACE05324.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1]
Length = 144
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + I +ID G KR GLA +DP FA P +K+ + SF+ ++ I+G
Sbjct: 5 PIKRILAIDYGKKRTGLAKTDPFCSFAQPVGTFPPEKIITI---IKSFLQENSVEKIIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
PLN +G++ P F+ + +P DE ++ A ++LI+ +SRKKR +
Sbjct: 62 YPLNSDGTKNPMTGIIDGFIEELSAAFPDIPVEPIDEHGSSKQAGKVLIESGLSRKKRQR 121
Query: 135 K--VDSIAAALILQEVLD 150
K +DS AA L+LQ L+
Sbjct: 122 KGRLDSAAACLLLQHYLE 139
>gi|317050665|ref|YP_004111781.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5]
gi|316945749|gb|ADU65225.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5]
Length = 152
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G++R+G+A+SD RR A L R+ Q + +I + ++G+PL+
Sbjct: 4 ILALDIGSRRVGVAVSDSQRRMASTLKTLERQDYQQMLHRIGKYIEEYGVDLLVVGIPLD 63
Query: 79 -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136
+GS P+ A + +R VP + DER +T + LI + ++SRKKR + V
Sbjct: 64 SRDGSFTPKAMEIGAEARQLQER-FAVPVIGVDERFSTSKSNDFLIGVADLSRKKRKKVV 122
Query: 137 DSIAAALILQEVLD 150
D++AA ILQ LD
Sbjct: 123 DTMAAQNILQGYLD 136
>gi|126434972|ref|YP_001070663.1| Holliday junction resolvase-like protein [Mycobacterium sp. JLS]
gi|167012736|sp|A3PZ45|RUVX_MYCSJ RecName: Full=Putative Holliday junction resolvase
gi|126234772|gb|ABN98172.1| Holliday junction resolvase YqgF [Mycobacterium sp. JLS]
Length = 169
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
ID+G R+G+A SDP A P + R+K + + L+ + TE ++GLP +
Sbjct: 24 GIDVGCVRVGVATSDPDGVLATPVETVRREKSSDRHVRRLAQLVTELEAVEVVVGLPRTL 83
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
GP H + R VP DERLTTVSAQ+ L + V K + +D +
Sbjct: 84 ADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVSAQRSLREAGVRAKGQRAMIDQV 143
Query: 140 AAALILQEVLD 150
AA ILQ LD
Sbjct: 144 AAVGILQSWLD 154
>gi|330719458|gb|EGG98088.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC2047]
Length = 142
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GT RIG+A A P P L + +L I AF++G+PLN
Sbjct: 9 ILAFDFGTHRIGMAFGQALTGTASPLPILPARDGIPDWQKLGKIIEEWQPDAFVVGVPLN 68
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+EGP R F N + + + P DERL+T+ A++ L + N K +DS
Sbjct: 69 MDGTEGPITPRARKFA-NRLHGRFHKPIYTMDERLSTIEAKEKLAEFN---NKNSIGLDS 124
Query: 139 IAAALILQ 146
+AA LIL+
Sbjct: 125 MAATLILE 132
>gi|184200991|ref|YP_001855198.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201]
gi|183581221|dbj|BAG29692.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201]
Length = 165
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 7/138 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---LLSFITTENIAAFIIGLPL 77
+D+GT R+G+A++DP A P L R + A + + ++ +GLP
Sbjct: 12 GVDVGTVRVGIALTDPDCVLATPHQTLTRDPNPRKAFDVKIITKLCEQRDVRTVYVGLPR 71
Query: 78 NMNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
++NG E R + ++ R DERL+TV+A + L+D VSR++ +
Sbjct: 72 SLNGHENDSTRMARDYAAGLLRRLGSRGCTTEVRLVDERLSTVTAHRSLLDSGVSRREHM 131
Query: 134 QKVDSIAAALILQEVLDR 151
+VD AA LQ +D+
Sbjct: 132 DRVDQAAAVTFLQTAVDQ 149
>gi|295111267|emb|CBL28017.1| conserved hypothetical protein TIGR00250 [Synergistetes bacterium
SGP1]
Length = 146
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query: 17 QP--IASIDLGTKRIGLAISDPGRRFAHP---RPFLVRKKVTQTALE--LLSFITTENIA 69
QP + ++D+G+ R+G AISDP R A P + R + E L+ + T
Sbjct: 5 QPGRVLALDVGSARVGAAISDPMRLIAQGLAVWPVVDRDGGWRRKFEACLVQYAPT---- 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++G+P +G+ GP V + + F WDER TTV A + +I+ VSR
Sbjct: 61 LVLVGMPTRTDGTRGPEAERVAKLVDLLRAGHPDLAFDTWDERFTTVMAHRAMIEGGVSR 120
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
R Q+VD IAA LIL+ L R
Sbjct: 121 SGRRQRVDKIAAVLILESWLAR 142
>gi|258653459|ref|YP_003202615.1| Holliday junction resolvase YqgF [Nakamurella multipartita DSM
44233]
gi|258556684|gb|ACV79626.1| Holliday junction resolvase YqgF [Nakamurella multipartita DSM
44233]
Length = 169
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
+D+GT R+G+A SDP A P L R + T +++A
Sbjct: 20 GVDVGTVRVGVARSDPAGILATPVTTLQRSAAPSSGKSGDRAEPTADLSALRDLVVEHDV 79
Query: 72 ---IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP + G EG V + RA+ + VP V+ DERLTTV+A ++L +
Sbjct: 80 VEVVVGLPTTLRGMEGSAVTAARAYGQALAALIAPVPVVYVDERLTTVTADRVLAQAGIK 139
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
K R VD +AA ILQ LD
Sbjct: 140 GKARRAVVDQVAATRILQNRLD 161
>gi|323698536|ref|ZP_08110448.1| Holliday junction resolvase YqgF [Desulfovibrio sp. ND132]
gi|323458468|gb|EGB14333.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
ND132]
Length = 138
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78
ID G KR+GLA+SD P L ++ T+ AL EL I E I A ++GLPL
Sbjct: 5 GIDFGLKRVGLAVSDRTGTLVSPLKTL--ERTTRQALFDELTEIIHDEAIEAVVVGLPLA 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G + R F ++ R++ P DERLT+ A++ L + KR +DS
Sbjct: 63 LSGEDTLTTRQARNFAESL-GRRIDAPVHLMDERLTSAQAEEELNAAGLRGAKRKAALDS 121
Query: 139 IAAALILQEVLD 150
AA +IL+ LD
Sbjct: 122 QAAVVILRSWLD 133
>gi|269925209|ref|YP_003321832.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC
BAA-798]
gi|269788869|gb|ACZ41010.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC
BAA-798]
Length = 149
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 8/138 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID G KRIG+A+SDP A + R + E+ EN+ ++GLPL+
Sbjct: 3 VMGIDPGRKRIGIALSDPTGLLATAYKVIHRTTSDRDLEEIRRIAEHENVEKIVVGLPLH 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRKKRI 133
M+G EG R I+ +P DERLT+V A++ L++ + RKK
Sbjct: 63 MSGYEGEEAVRARELA-KQIETATGLPVELVDERLTSVEAERRLLESRRKLGKLGRKK-- 119
Query: 134 QKVDSIAAALILQEVLDR 151
+D+ AAA++LQ+ LD+
Sbjct: 120 LAIDAEAAAVLLQDYLDQ 137
>gi|302561724|ref|ZP_07314066.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000]
gi|302479342|gb|EFL42435.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000]
Length = 163
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DP A P + + V L + ++GLP ++
Sbjct: 17 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGLLVQEYEPIEVVVGLPRSLK 76
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R F + VP DER+TTV+A Q L V KK +D A
Sbjct: 77 GGEGPAAAKVRGFARELARGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRSVIDQAA 136
Query: 141 AALILQEVL--DRISFLESSKG 160
A +ILQ+ L +R+S +G
Sbjct: 137 AVIILQQALESERVSGRPPGEG 158
>gi|294811564|ref|ZP_06770207.1| Putative Holliday junction resolvase [Streptomyces clavuligerus
ATCC 27064]
gi|326440051|ref|ZP_08214785.1| Holliday junction resolvase-like protein [Streptomyces clavuligerus
ATCC 27064]
gi|294324163|gb|EFG05806.1| Putative Holliday junction resolvase [Streptomyces clavuligerus
ATCC 27064]
Length = 157
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 61/130 (46%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A DP A P + + V + + + ++GLP ++N
Sbjct: 11 ALDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRIRALVEEYEPIEIVVGLPRSLN 70
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R F + VP DER+TTV+A Q L V KK VD A
Sbjct: 71 GREGPAAKKVRTFAGEVARGVAPVPVRLVDERMTTVTATQGLRASGVKAKKGRSVVDQAA 130
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 131 AVVILQNALE 140
>gi|187735685|ref|YP_001877797.1| Holliday junction resolvase YqgF [Akkermansia muciniphila ATCC
BAA-835]
gi|187425737|gb|ACD05016.1| Holliday junction resolvase YqgF [Akkermansia muciniphila ATCC
BAA-835]
Length = 141
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
P ID G RIG+A +DP AHP + R + T ++ + I ++GLP
Sbjct: 5 HPALGIDYGEARIGIAATDPVGIMAHPVETIHRHQ-TDGISRIVQLVQERGIRTLVLGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ M+G+EG RAF + +P +F DE LTTV AQ+ L K +
Sbjct: 64 VRMDGTEGTAAAKVRAFGRELAAALPGLPLIFMDECLTTVIAQEKLHAAGKKAKNFRPII 123
Query: 137 DSIAAALILQEVLD 150
D +AA IL LD
Sbjct: 124 DQVAAVEILNTWLD 137
>gi|291166998|gb|EFE29044.1| Holliday junction resolvase [Filifactor alocis ATCC 35896]
Length = 140
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G +RIG+A+SD P + R K + +++ I +I + GLP N
Sbjct: 6 ILALDVGDRRIGMAMSDLLGWTPQPLYTIHRTKDEEDLGKIVEVIKQYDIGTIVCGLPKN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVP---FVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
M+G+ G + T FV + +++ P VF DERL+T SA+Q++ V +K +
Sbjct: 66 MDGTVGFQGEKTMQFVEQL--QQLIPPEIKVVFQDERLSTKSAKQVMHTSGVKKKNKKNM 123
Query: 136 VDSIAAALILQEVL 149
+D+IAA IL+ L
Sbjct: 124 IDTIAAVFILETYL 137
>gi|260912123|ref|ZP_05918679.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260633729|gb|EEX51863.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 138
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I S+D G KR G+A++DP + + LV + LL +I E + ++G P
Sbjct: 4 ILSVDYGKKRTGIAVTDPLQIICNG---LVTVSSSTLVDFLLDYIQKEEVELIVVGEPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
NG + + FV +P V++DER T+V A + +ID + +K R K V
Sbjct: 61 TNGQPSENLERVKQFVARWKKVCPTIPIVYYDERFTSVLAHRAMIDGGLKKKARQDKALV 120
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D I+A +ILQ S+LES +
Sbjct: 121 DEISATIILQ------SYLESKR 137
>gi|227877598|ref|ZP_03995652.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
JV-V01]
gi|256844559|ref|ZP_05550045.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256849052|ref|ZP_05554485.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|262047534|ref|ZP_06020489.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
gi|293381588|ref|ZP_06627575.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1]
gi|295692278|ref|YP_003600888.1| holliday junction resolvase [Lactobacillus crispatus ST1]
gi|312977881|ref|ZP_07789627.1| putative Holliday junction resolvase [Lactobacillus crispatus
CTV-05]
gi|227862792|gb|EEJ70257.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
JV-V01]
gi|256613637|gb|EEU18840.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256713828|gb|EEU28816.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|260572110|gb|EEX28675.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
gi|290921858|gb|EFD98873.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1]
gi|295030384|emb|CBL49863.1| Holliday junction resolvase [Lactobacillus crispatus ST1]
gi|310895188|gb|EFQ44256.1| putative Holliday junction resolvase [Lactobacillus crispatus
CTV-05]
Length = 142
Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 5/134 (3%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLN 78
+D+G+K +G+AISD G + + + L + + F++GLP N
Sbjct: 5 GLDVGSKTVGVAISDELGITAQKLETIQIDESRYNFGMRPLKKLVRQYEVDGFVLGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRIQKV 136
M+G+ G V ++A+ ++ K +P + DERLTT+ ++++L+ D + RKKR Q +
Sbjct: 65 MDGTSGSSVARSKAY-GKRLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRKQVI 123
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 124 DQMAAVLILQNYLD 137
>gi|189184333|ref|YP_001938118.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi
str. Ikeda]
gi|226731634|sp|B3CU37|RUVX_ORITI RecName: Full=Putative Holliday junction resolvase
gi|189181104|dbj|BAG40884.1| putative Hollyday junction resolvase [Orientia tsutsugamushi str.
Ikeda]
Length = 157
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGL 75
+ I ID G K++G+AIS+ A P + Q + + I NI A +IGL
Sbjct: 17 KQILGIDFGEKKVGVAISNIEHTVAMPLQTIF--ATNQDRINKIQEIAVAYNIGAIVIGL 74
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P ++G+E + H + F N + K+ +P DERLT+ +A +L N+ RK R
Sbjct: 75 PFKLDGTETSQTHRVKDFA-NKLANKLLLPIFLCDERLTSKAANNLLKMGNIKRKVRNAI 133
Query: 136 VDSIAAALILQEVLDRI 152
D +AA++IL+ L R+
Sbjct: 134 DDRVAASIILEGTLKRM 150
>gi|298346852|ref|YP_003719539.1| putative Holliday junction resolvase [Mobiluncus curtisii ATCC
43063]
gi|315656690|ref|ZP_07909577.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|298236913|gb|ADI68045.1| possible Holliday junction resolvase [Mobiluncus curtisii ATCC
43063]
gi|315492645|gb|EFU82249.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 152
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A S G A P L + ELL+ IT N AA +GLP M+
Sbjct: 8 AIDVGKARIGVARSVSGTSLALPVKTLQVQPDGSELDELLAIITDSNPAAVFVGLPKLMS 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG R++ ++ R +P DERL++ A L V +++ + VD +A
Sbjct: 68 GKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQAGVCARRQKEMVDQLA 127
Query: 141 AALILQEVLDRIS 153
A IL L+ ++
Sbjct: 128 AVTILTRALETLT 140
>gi|258647931|ref|ZP_05735400.1| putative Holliday junction resolvase [Prevotella tannerae ATCC
51259]
gi|260851770|gb|EEX71639.1| putative Holliday junction resolvase [Prevotella tannerae ATCC
51259]
Length = 138
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 21/148 (14%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFI----TTENIAAFII 73
I +ID G KR G+A++D + ++ +T A ELL+F+ T E++ F+I
Sbjct: 4 ILAIDYGKKRTGIAVTDILQ--------IIPNGLTTVATHELLNFLKAYTTKEDVERFVI 55
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NG AF + +P F+DER T+ A Q ++ + +K+R
Sbjct: 56 GLPRQTNGKPSENFPRVEAFAKQLEQHFPTIPITFYDERYTSTLAHQAMLAGGLGKKRRQ 115
Query: 134 QK--VDSIAAALILQEVLDRISFLESSK 159
+K VD I+A +ILQ S++ES K
Sbjct: 116 EKALVDEISACIILQ------SYMESKK 137
>gi|332830441|gb|EGK03069.1| Holliday junction resolvase [Dysgonomonas gadei ATCC BAA-286]
Length = 141
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 13/140 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
++D GTKR G+A+SD + A+ + T T + L +++ E++ I+GLP M
Sbjct: 6 ALDYGTKRTGIAVSDTLKIIANG----LTTVPTHTLFDYLKTYLEREDVECIIVGLPKQM 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137
N + R FV + + +P +DER T+ AQ+ +ID + +K R K VD
Sbjct: 62 NNEYSENMKHIRPFVKKLQNLYPDIPVEMYDERFTSALAQKTMIDAGLRKKDRQNKALVD 121
Query: 138 SIAAALILQEVLDRISFLES 157
I+A +ILQ S++ES
Sbjct: 122 EISAVIILQ------SYMES 135
>gi|288817797|ref|YP_003432144.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6]
gi|288787196|dbj|BAI68943.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6]
gi|308751395|gb|ADO44878.1| Holliday junction resolvase YqgF [Hydrogenobacter thermophilus
TK-6]
Length = 133
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 7/136 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D G+KRIGLA+ D A P F R+ V + ++ + I+ ++ I+GLPL
Sbjct: 3 VLALDYGSKRIGLALGDTSLNIASPLGVFENREGVVE---KIRNLISEYRVSLLIVGLPL 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
G +G R FV + + + + WDER TT A +L D+ +++K+++
Sbjct: 60 TPRGQKGQRAKEVEEFVKKLRESLPEEIELLMWDERYTTKEAYWLLQDLPPTKRKKLK-- 117
Query: 137 DSIAAALILQEVLDRI 152
DS++A +IL+E L+ +
Sbjct: 118 DSLSAYIILKEYLESL 133
>gi|302517972|ref|ZP_07270314.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78]
gi|302426867|gb|EFK98682.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78]
Length = 157
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 62/130 (47%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DP A P + + V + + + ++GLP ++
Sbjct: 11 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVGLPRSLR 70
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP RAF + VP DER+TTV+A Q L V+ KK +D A
Sbjct: 71 GGEGPAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRSVIDQAA 130
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 131 AVIILQTALE 140
>gi|188995932|ref|YP_001930184.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis
ATCC 33277]
gi|188595612|dbj|BAG34587.1| probable endonuclease [Porphyromonas gingivalis ATCC 33277]
Length = 150
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 7/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
I +ID G KR GLA++DP + P + T T L+ L +++ E + F++GLP
Sbjct: 16 ILAIDYGRKRTGLAVTDPLKII----PGGLTTVPTHTLLDFLRDYVSREPVERFVLGLPR 71
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
MN E + R F + +P + DER T+ AQ+ +++ + + KR K
Sbjct: 72 RMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMKRRDKAL 131
Query: 136 VDSIAAALILQEVLD 150
VD ++A +ILQ LD
Sbjct: 132 VDEVSAVIILQSYLD 146
>gi|34541766|ref|NP_906245.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis
W83]
gi|62901001|sp|Q7MT06|RUVX_PORGI RecName: Full=Putative Holliday junction resolvase
gi|34398084|gb|AAQ67144.1| conserved hypothetical protein TIGR00250 [Porphyromonas gingivalis
W83]
Length = 138
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 7/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
I +ID G KR GLA++DP + P + T T L+ L +++ E + F++GLP
Sbjct: 4 ILAIDYGRKRTGLAVTDPLKII----PGGLTTVPTHTLLDFLRDYVSREPVERFVLGLPR 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
MN E + R F + +P + DER T+ AQ+ +++ + + KR K
Sbjct: 60 RMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMKRRDKAL 119
Query: 136 VDSIAAALILQEVLD 150
VD ++A +ILQ LD
Sbjct: 120 VDEVSAVIILQSYLD 134
>gi|118595162|ref|ZP_01552509.1| Holliday junction resolvase-like protein [Methylophilales bacterium
HTCC2181]
gi|118440940|gb|EAV47567.1| Holliday junction resolvase-like protein [Methylophilales bacterium
HTCC2181]
Length = 148
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAA 70
+++PN + + D G K+IG+AI + + AHP +RK +E++ + E
Sbjct: 9 NIRPNTNVIAFDFGEKKIGVAIGNSITKTAHPLE-TIRKVKKSERIEIIENLLNEWEPGI 67
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV-SR 129
++GLPLN +G+E + F + +R VP V DER T+V A +IL++ NV S
Sbjct: 68 VVVGLPLNEDGTESRLTLLAQNFAKKIKNR-FQVPIVMVDERYTSVEA-KILLNENVKSI 125
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
KK Q +D +AA +IL DR
Sbjct: 126 KKGNQVIDQVAAQIILGSYFDR 147
>gi|15672125|ref|NP_266299.1| hypothetical protein L141748 [Lactococcus lactis subsp. lactis
Il1403]
gi|12722992|gb|AAK04241.1|AE006252_3 hypothetical protein L141748 [Lactococcus lactis subsp. lactis
Il1403]
Length = 119
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLP +MNG EG R ++R + + + + + + DERLTT A+++LID V RK+
Sbjct: 36 VLGLPKHMNGDEGIRAEASRDYGTKLAN-EFGLEVAYQDERLTTAQAEKVLIDGGVRRKE 94
Query: 132 RIQKVDSIAAALILQEVLD 150
R + +D +AA LILQ LD
Sbjct: 95 RKKSIDKLAAVLILQNYLD 113
>gi|311748399|ref|ZP_07722184.1| putative Holliday junction resolvase [Algoriphagus sp. PR1]
gi|126576911|gb|EAZ81159.1| putative Holliday junction resolvase [Algoriphagus sp. PR1]
Length = 137
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 14/140 (10%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +IDLGTKR GLA++DP + A+P + K+ + ++I E + ++GLP
Sbjct: 4 VLAIDLGTKRTGLAVTDPLKMLANPLETIETFKLIDF---IKAYIAKEEVDTLVLGLPTK 60
Query: 79 MNGSEG---PRVHSTRAFVH-NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+NG + P+V + + + N +KV DER T+ A Q +I M +K R +
Sbjct: 61 LNGKDNEMTPKVMAMKTKLEKNFPSQKVE----LVDERFTSKMAMQSMITMGSKKKDRRE 116
Query: 135 K---VDSIAAALILQEVLDR 151
K +D ++AA+ILQ L+R
Sbjct: 117 KAGNLDKVSAAIILQSYLER 136
>gi|326798192|ref|YP_004316011.1| Holliday junction resolvase [Sphingobacterium sp. 21]
gi|326548956|gb|ADZ77341.1| Holliday junction resolvase [Sphingobacterium sp. 21]
Length = 137
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GTKRIG+A++DP + A + K V + L +++ E + +F++G+P
Sbjct: 3 IMAFDYGTKRIGVAVTDPLQIIATALTTIHPKDVIEY---LKKYVSQEQVESFVVGMPKQ 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
++GS+ + F++ + +P V DER T+ A + + + R KR +K V
Sbjct: 60 LDGSDSQSAVHVKGFINLLKKSFPQMPIVTMDERFTSKMASASIAESGLRRSKRQEKGLV 119
Query: 137 DSIAAALILQEVLDRI 152
D+I+A +ILQ+ L I
Sbjct: 120 DAISAVIILQDYLKTI 135
>gi|288928224|ref|ZP_06422071.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str.
F0108]
gi|288331058|gb|EFC69642.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str.
F0108]
Length = 138
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I S+D G KR G+A++DP + + LV + LL + E + ++G P
Sbjct: 4 ILSVDYGQKRTGIAVTDPLQIICNG---LVTVSSSTLVDFLLDYTKREEVELIVVGEPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
NG + R FV +P V++DER T+V A + +ID + +K R K V
Sbjct: 61 TNGQPSENLERVRQFVARWKKACPTIPVVYYDERFTSVLAHRAMIDGGLKKKARQDKALV 120
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D I+A +ILQ S+LES +
Sbjct: 121 DEISATIILQ------SYLESKR 137
>gi|333028350|ref|ZP_08456414.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071]
gi|332748202|gb|EGJ78643.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071]
Length = 154
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 62/130 (47%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DP A P + + V + + + ++GLP ++
Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVGLPRSLR 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP RAF + VP DER+TTV+A Q L V+ KK +D A
Sbjct: 68 GGEGPAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRSVIDQAA 127
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 128 AVIILQTALE 137
>gi|237736820|ref|ZP_04567301.1| DNA integration/recombination/invertion protein [Fusobacterium
mortiferum ATCC 9817]
gi|229420682|gb|EEO35729.1| DNA integration/recombination/invertion protein [Fusobacterium
mortiferum ATCC 9817]
Length = 139
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 6/134 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A SD A P + R+KV + + + EN + +IG+P +++
Sbjct: 7 ALDVGDVRIGVAKSDIMGILATPLEVIDRRKV-KAVKRIEEILIQENTKSLVIGIPKSLD 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137
G+E + R F+ + + DERLTTVSA ++L + N +K ++K VD
Sbjct: 66 GTEKRQAEKVREFIEKLNKSIEGLEIFEVDERLTTVSADRLLNETN--KKGALEKRKVVD 123
Query: 138 SIAAALILQEVLDR 151
+AAA+ILQ LDR
Sbjct: 124 KVAAAIILQTFLDR 137
>gi|320011911|gb|ADW06761.1| Holliday junction resolvase YqgF [Streptomyces flavogriseus ATCC
33331]
Length = 157
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 59/130 (45%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DP A P + + V L + I+GLP ++
Sbjct: 11 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGQIVEEYEPIEVIVGLPRSLG 70
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP RAF +P DER+TTV+A Q L V KK +D A
Sbjct: 71 GGEGPAAAKVRAFAQVFARAVAPIPVRLLDERMTTVTATQGLRASGVKSKKGRSVIDQAA 130
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 131 AVVILQNALE 140
>gi|304389443|ref|ZP_07371406.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304327253|gb|EFL94488.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 152
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A S G A P L + ELL+ IT N AA +GLP M+
Sbjct: 8 AIDVGKARIGVARSVSGTSLALPVKTLQVQLDGSELDELLAIITDSNPAAVFVGLPKLMS 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG R++ ++ R +P DERL++ A L V +++ + VD +A
Sbjct: 68 GKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQAGVCARRQKEMVDQLA 127
Query: 141 AALILQEVLDRIS 153
A IL L+ ++
Sbjct: 128 AVTILTRALETLT 140
>gi|323344259|ref|ZP_08084485.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC
33269]
gi|323094988|gb|EFZ37563.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC
33269]
Length = 137
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I SID G KR G+A++DP + A L ++ L+ ++ E + +IG P+
Sbjct: 4 ILSIDYGRKRTGVAVTDPLQLIAGG---LATVATSELFNYLMQYVQHEEVERIVIGKPMQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
NG + FV +P ++DER T+V AQ+++ID + +K R K V
Sbjct: 61 TNGQPSENLQRVEQFVDRWRKAMPQIPIEYYDERFTSVIAQRVIIDSGLKKKARQNKALV 120
Query: 137 DSIAAALILQEVL 149
D I+A +IL++ +
Sbjct: 121 DEISATIILEDWM 133
>gi|229495944|ref|ZP_04389668.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
gi|229317036|gb|EEN82945.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
Length = 148
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
I +ID G KR GLA++DP R P + + L+ LS +I E + ++G P
Sbjct: 4 ILAIDYGKKRTGLAVTDPLRI----TPGGLATVASSELLQYLSEYIPREGVDLVVVGYPR 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
MN E + FV + R + V++DER T+ AQ+ +++ + ++KR K
Sbjct: 60 QMNNEESESMRYIGPFVAKLEKRFPQLRIVYYDERFTSCLAQKTILESGIGKQKRRNKAL 119
Query: 136 VDSIAAALILQEVLDRISF 154
VD ++A +ILQ ++ +++
Sbjct: 120 VDEVSAIIILQSYMESLAY 138
>gi|302344298|ref|YP_003808827.1| Holliday junction resolvase YqgF [Desulfarculus baarsii DSM 2075]
gi|301640911|gb|ADK86233.1| Holliday junction resolvase YqgF [Desulfarculus baarsii DSM 2075]
Length = 136
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A+SD A P L R+ + + E ++GLPL+ +
Sbjct: 2 ALDVGRARIGVAVSDEAGLTAQPLCVLRRQGRDEDVRAIGRLAQREGARLIVLGLPLHND 61
Query: 81 --GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G E RV S + + R++ +P F +E TT+ A + +++ ++SRK+R + VD
Sbjct: 62 QIGPEAQRVIS----LGRRLQRRLGLPVGFTNEEDTTIEAHEAMLEADLSRKRRAEVVDK 117
Query: 139 IAAALILQEVLD 150
+AAALIL+ LD
Sbjct: 118 VAAALILRRWLD 129
>gi|255537457|ref|XP_002509795.1| conserved hypothetical protein [Ricinus communis]
gi|223549694|gb|EEF51182.1| conserved hypothetical protein [Ricinus communis]
Length = 168
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 10/157 (6%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELL 60
I L DL+KS K N + +D+G K +GLAISD + A P L+RKK + A +
Sbjct: 7 IALFNDLMKS-KSNGRLLGLDVGDKYVGLAISDRHNKIASPLSVLLRKKSNIDLVATDFQ 65
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSA 118
S I+ ++A F++G P + S +H + F+ ++ I + + + FWDE T+ +
Sbjct: 66 SLISELSLAGFVVGYPFDRQRSTPDALH-VKLFIDDLRKIGKLEGLKYTFWDECFTSKNV 124
Query: 119 QQIL--IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ ++ +D++ K I +D AA ILQ LD ++
Sbjct: 125 ELLVQPLDLHPVEAKTI--MDKFAAVGILQGYLDYVN 159
>gi|104774411|ref|YP_619391.1| putative Hollyday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|118597212|sp|Q1G949|RUVX_LACDA RecName: Full=Putative Holliday junction resolvase
gi|103423492|emb|CAI98394.1| Putative Hollyday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 142
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLN 78
+D+G+K IG+A+SDP G + + + L + E A F++GLP N
Sbjct: 5 GLDVGSKTIGVAVSDPLGITAQSVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136
M+G+ G V ++A +++K +P + DERLTTV++++IL++ R++R + V
Sbjct: 65 MDGTAGRSVSRSKAMGER-LEQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRKEVV 123
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 124 DQMAAVLILQNYLD 137
>gi|319790615|ref|YP_004152248.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1]
gi|317115117|gb|ADU97607.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1]
Length = 134
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 8/134 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G KRIG+A+SDP + A P L RK +T ELL + + + ++G+P+N
Sbjct: 2 ALDVGFKRIGVALSDPLKLTASPYRILYRKSNRETFEELLKIVLDKGVEEIVVGIPINAQ 61
Query: 81 GSE---GPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
G + G ++ A + + + + Y +P DE +T A+++ + K +++
Sbjct: 62 GEKTKIGQKIEKFTAKLQSFLRERGYQIPIYTHDESFSTQEAREVARSLG----KEKEEL 117
Query: 137 DSIAAALILQEVLD 150
D AAALIL+E L+
Sbjct: 118 DDYAAALILKEWLE 131
>gi|284040266|ref|YP_003390196.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74]
gi|283819559|gb|ADB41397.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74]
Length = 142
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID G KR G+A++DP + A + +V + L +++ E + AF++GLP ++
Sbjct: 6 AIDYGMKRTGIAVTDPLQLIASALETVPSHEVLKF---LKAYLVREPVEAFVVGLPKGLD 62
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138
G + R FV ++ + +P + DER T+V A Q +I ++K R +K +D
Sbjct: 63 GEDTDNTPRVRKFVTHLQNAFPDIPVYWHDERFTSVMALQAMIAGGSTKKDRREKGNIDK 122
Query: 139 IAAALILQEVLDR 151
++AA+ILQ ++R
Sbjct: 123 VSAAIILQSYMER 135
>gi|291544813|emb|CBL17922.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. 18P13]
Length = 140
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-----NIAAFII 73
I ++D G R GLA D A P +++T E+ T E ++
Sbjct: 3 ILAVDFGDARTGLACCDRSELLASPAGV-----ISETDFEVCIQKTAEAAREHRAEQIVV 57
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKR 132
G P NMNG+ G R F + R + + V WDER TTVSA + L N KKR
Sbjct: 58 GYPKNMNGTIGERAEKCALFAEKL--RTLAGIETVLWDERCTTVSAHRYLNQTNTRGKKR 115
Query: 133 IQKVDSIAAALILQEVL 149
VD++AA +IL+ L
Sbjct: 116 KAVVDAVAATIILESYL 132
>gi|302525837|ref|ZP_07278179.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4]
gi|302434732|gb|EFL06548.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4]
Length = 166
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79
++D+G+ R+G+A+SDP A P L R + L+ L+ + TE+ + I+GLP +
Sbjct: 24 AVDVGSVRVGVALSDPAPVLASPLVTLSRDAKDDSDLDRLAELVTEHEVVEVIVGLPRTL 83
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G A+ + R VP DERLTTV+A ++L V +K+ VD
Sbjct: 84 ANRQGAAADLALAYAEKLAGRVGDVPVRLADERLTTVTASRMLSQRGVKGRKQRAVVDQA 143
Query: 140 AAALILQEVLDRISFLESSKG 160
AA ILQ LD + + KG
Sbjct: 144 AAVEILQAWLDAAAAHRARKG 164
>gi|290961839|ref|YP_003493021.1| Holliday junction resolvase subunit [Streptomyces scabiei 87.22]
gi|260651365|emb|CBG74487.1| putative holliday junction resolvase subunit [Streptomyces scabiei
87.22]
Length = 154
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 60/130 (46%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A DP A P + + V L + I+GLP ++
Sbjct: 8 ALDVGDARIGVASCDPDGILATPVETVPGRDVPAAQRRLRQLVDEYVPMEVIVGLPRSLK 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R F + VP DER+TTV+A Q L V KK +D A
Sbjct: 68 GGEGPAAVKVRGFAQELARMIAPVPVRLLDERMTTVTAGQGLRASGVKSKKGRSVIDQAA 127
Query: 141 AALILQEVLD 150
A +ILQ+ L+
Sbjct: 128 AVIILQQALE 137
>gi|298530269|ref|ZP_07017671.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509643|gb|EFI33547.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans
ASO3-1]
Length = 140
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID G KR+GLA+SD + P + R LELL+ I I A ++GLPL +
Sbjct: 5 GIDFGIKRVGLAVSDEKGKMVFPLKTIHRSTRENLFLELLNIIQERGIEAIVLGLPLGPD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G + F+ ++ DR+ +P +E T++ A+ IL + +K+ + +D A
Sbjct: 65 GEKSLTCRQAENFMQSL-DRRTDLPIYTVNEAYTSMEAEDILNRCGIRVEKQKESLDQAA 123
Query: 141 AALILQEVLDRISFLES 157
A +IL+ L I E
Sbjct: 124 AVIILESFLAGIPLREG 140
>gi|212716058|ref|ZP_03324186.1| hypothetical protein BIFCAT_00971 [Bifidobacterium catenulatum DSM
16992]
gi|212661425|gb|EEB22000.1| hypothetical protein BIFCAT_00971 [Bifidobacterium catenulatum DSM
16992]
Length = 151
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 13/144 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
IDLG R+GLA+SDPG A+P + + AL E++ I E + I+GLPL +
Sbjct: 5 GIDLGDARVGLALSDPGITLAYPAGNIQVYGDSFRALDEVVDVIEDELVDHVIVGLPLLL 64
Query: 80 NGSEGPRVHSTRAFVHNM-------IDRKVY----VPFV-FWDERLTTVSAQQILIDMNV 127
+G EG R + N+ ++ Y VP + DERLTTV+A L D +
Sbjct: 65 SGEEGKSAKKARRWTVNLERRLRAAVEDDEYSLTQVPTIELVDERLTTVTAHHQLFDAQI 124
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
+ VD +A +ILQ +DR
Sbjct: 125 GGHEHRPMVDQQSAVVILQTAIDR 148
>gi|119484674|ref|ZP_01619156.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106]
gi|119457492|gb|EAW38616.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106]
Length = 149
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KRIG+A D FA L R + +L + + ++GLP +MN
Sbjct: 14 GLDIGQKRIGVAGCDGLGLFATGLMTLKRSAFERDVAQLRELVEDRRVQVLVVGLPYSMN 73
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ G + + + + + + +P + DERLT+ A+Q+L D ++S + +D A
Sbjct: 74 GTIGFQAKKVQKYATGLA-KALDLPLEYVDERLTSFQAEQMLRDAHISPSRNKGLIDRKA 132
Query: 141 AALILQEVLDR 151
AA+ILQ+ LD+
Sbjct: 133 AAIILQQWLDQ 143
>gi|300811591|ref|ZP_07092075.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|313124258|ref|YP_004034517.1| holliday junction resolvase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|300497451|gb|EFK32489.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|312280821|gb|ADQ61540.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|325126221|gb|ADY85551.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|325685731|gb|EGD27809.1| crossover junction endodeoxyribonuclease [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 142
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLN 78
+D+G+K IG+A+SDP G + + + L + E A F++GLP N
Sbjct: 5 GLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEADGFVLGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136
M+G+ G V ++A +++K +P + DERLTTV++++IL++ R++R + V
Sbjct: 65 MDGTAGRSVSRSKAMGER-LEQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRKEVV 123
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 124 DQMAAVLILQNYLD 137
>gi|116514509|ref|YP_813415.1| Holliday junction resolvase-like protein [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|122274759|sp|Q048Z5|RUVX_LACDB RecName: Full=Putative Holliday junction resolvase
gi|116093824|gb|ABJ58977.1| RNase H-like ribonuclease [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 142
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLN 78
+D+G+K IG+A+SDP G + + + L + E A F++GLP N
Sbjct: 5 GLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKV 136
M+G+ G V ++A +++K +P + DERLTTV++++IL++ R++R + V
Sbjct: 65 MDGTAGRSVSRSKAMGER-LEQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRKEVV 123
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 124 DQMAAVLILQNYLD 137
>gi|67923975|ref|ZP_00517429.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501]
gi|67854195|gb|EAM49500.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501]
Length = 143
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KRIG+A D A + RK Q +L + +T N+ ++GLP M+
Sbjct: 8 GLDVGKKRIGVAGCDGTGLIATGLTTIERKSFPQDVQQLQALVTERNVQLLVVGLPYCMD 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS G + + F I + + +P + DERLT+V A+ L + VD +A
Sbjct: 68 GSIGFQAKQVQKFAKR-ISKALELPVEYMDERLTSVEAETHLKAQKKYSRHNKGLVDRLA 126
Query: 141 AALILQEVLD--RISFL 155
A +ILQ+ LD R SF+
Sbjct: 127 ATIILQQWLDQRRASFV 143
>gi|82703594|ref|YP_413160.1| Holliday junction resolvase-like protein [Nitrosospira multiformis
ATCC 25196]
gi|146325582|sp|Q2Y653|RUVX_NITMU RecName: Full=Putative Holliday junction resolvase
gi|82411659|gb|ABB75768.1| Holliday junction resolvase YqgF [Nitrosospira multiformis ATCC
25196]
Length = 151
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Query: 6 IEDLVKSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
+E+ K+ +P+ A + D G KRIG+AI + AHP L K + + +
Sbjct: 1 MEEAEKASQPHAGTALAFDFGEKRIGVAIGNLELGLAHPLVTLSNKNKEECLKSIARLMD 60
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
++GLP++ +G+E +R F H + R + V DER T++SA L +
Sbjct: 61 EWKPVLLVVGLPVHADGTEHELTRRSRRFAHRLQAR-FGIRTVLEDERYTSISASSALDE 119
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDR 151
+V +++ Q +D IAA LILQ D+
Sbjct: 120 ASVRGRRQKQVLDQIAAQLILQSYFDQ 146
>gi|284991580|ref|YP_003410134.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
43160]
gi|284064825|gb|ADB75763.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
43160]
Length = 222
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID+GT R+G+AISDP A P + R + + + + + I+G P +++
Sbjct: 87 GIDVGTVRVGVAISDPTGTLASPLETVQRARDESDLDRIAALVVEHEVTEVIVGEPRHLS 146
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ G RA+ + R VP DERL+TV+A L + +++ +D A
Sbjct: 147 GASGASAKEARAYSRALAGRIGSVPVHLVDERLSTVTAASSLRANGLDSRRQRPVIDQAA 206
Query: 141 AALILQEVLD 150
A +ILQ LD
Sbjct: 207 AVVILQAYLD 216
>gi|166154394|ref|YP_001654512.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
434/Bu]
gi|166155269|ref|YP_001653524.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|255348541|ref|ZP_05380548.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 70]
gi|255503081|ref|ZP_05381471.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
70s]
gi|255506759|ref|ZP_05382398.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
D(s)2923]
gi|301335653|ref|ZP_07223897.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
L2tet1]
gi|226725500|sp|B0B9T4|RUVX_CHLT2 RecName: Full=Putative Holliday junction resolvase
gi|226725501|sp|B0BBG4|RUVX_CHLTB RecName: Full=Putative Holliday junction resolvase
gi|558088|gb|AAA80196.1| unknown [Chlamydia trachomatis]
gi|165930382|emb|CAP03875.1| putative Holliday junction resolvase [Chlamydia trachomatis 434/Bu]
gi|165931257|emb|CAP06829.1| putative Holliday junction resolvase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|289525222|emb|CBJ14698.1| putative Holliday junction resolvase [Chlamydia trachomatis
Sweden2]
gi|296434770|gb|ADH16948.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
E/150]
gi|296438490|gb|ADH20643.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
E/11023]
Length = 148
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 14 KPNQPIASIDLGTKRIGLAI-SDPGRRFAHPRPF---LVRKKVTQTALELLSFITTENIA 69
K Q ID G KRIGLA S P P P R +T TA L+S I +
Sbjct: 5 KQQQAFLGIDYGKKRIGLAFASSP---LLIPLPIGNVEARSSLTLTAQALVSIIKERAVT 61
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVS 128
+ G PL M + V S + +I + + WDERL++ A+++L D ++
Sbjct: 62 TVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLN 121
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
RK+R DS+AA LIL LD
Sbjct: 122 RKQRKNSSDSLAATLILSSFLD 143
>gi|58584953|ref|YP_198526.1| endonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi]
gi|81311607|sp|Q5GRU0|RUVX_WOLTR RecName: Full=Putative Holliday junction resolvase
gi|58419269|gb|AAW71284.1| Predicted endonuclease involved in recombination, RNase H fold,
yqgF family [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 155
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 1/149 (0%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
+ +KS+ ++ I +D+G K+IG+A SD + A RK +++ L
Sbjct: 8 EFLKSIPKDKCIMCLDMGEKQIGIAFSDKTQLIATAHSVYYRKNISKDLGYLNRIFKKNE 67
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+ +IGLPL ++G + + F + MI +K V DE L+T A L V
Sbjct: 68 AGSIVIGLPLEIDGQKSEWCKTIIKFANKMI-KKYKVSTYLQDESLSTSIAAHTLKISGV 126
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLE 156
S K + D I+A +ILQ LD+I+ ++
Sbjct: 127 STTKSKRIDDKISACIILQRTLDKINVIK 155
>gi|325280500|ref|YP_004253042.1| Holliday junction resolvase [Odoribacter splanchnicus DSM 20712]
gi|324312309|gb|ADY32862.1| Holliday junction resolvase [Odoribacter splanchnicus DSM 20712]
Length = 141
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 5/135 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR+GLA+SDP A ++ +++ + L ++++ E + F++G P
Sbjct: 4 ILAIDYGKKRVGLAVSDPCGIIATGLQTVLSQEIFRF---LEAYLSHEKVDLFVVGHPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
M+ S+ + + F+ + R ++P V +DER T+V A + L++ +K R K +
Sbjct: 61 MDNSDSESMTYIKPFLSGLKRRFPHIPIVMYDERFTSVLAHKALLEGGAKKKTRQDKALI 120
Query: 137 DSIAAALILQEVLDR 151
D+++A +IL +++
Sbjct: 121 DTMSATIILTSYMEQ 135
>gi|332878466|ref|ZP_08446187.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683561|gb|EGJ56437.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 144
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +ID G KR G+A++DP + A+ + V ++S++ E++ ++GLP
Sbjct: 4 VLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDF---IVSYVRQEHVERIVVGLPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
NG + + +FV + +R +P F+DER T+V A Q ++ + +K R K V
Sbjct: 61 ANGEDSENMGRINSFVRCLHERLPEIPVEFFDERYTSVLAHQAMLQGGLRKKARQNKALV 120
Query: 137 DSIAAALILQ 146
D I+A +ILQ
Sbjct: 121 DEISATIILQ 130
>gi|227888703|ref|ZP_04006508.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
ATCC 33200]
gi|227850730|gb|EEJ60816.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
ATCC 33200]
Length = 143
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 17/140 (12%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75
+D+G+K +G+AISDP L K+ ++ ++ + ++ F++GL
Sbjct: 5 GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGLRQIRKIVRKYDVEGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRK 130
P NM+GS G V ++ + + + K +P + DERLTTV A +IL++ V RK
Sbjct: 62 PKNMDGSSGRSVERSKQYGERLKE-KFDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120
Query: 131 KRIQKVDSIAAALILQEVLD 150
K I D +AA LILQ L+
Sbjct: 121 KVI---DQMAAVLILQNYLE 137
>gi|313203125|ref|YP_004041782.1| holliday junction resolvase yqgf [Paludibacter propionicigenes WB4]
gi|312442441|gb|ADQ78797.1| Holliday junction resolvase YqgF [Paludibacter propionicigenes WB4]
Length = 139
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR+GLA++D A+ + +V T LE +I E + F+IGLP
Sbjct: 4 ILAIDYGQKRVGLAVTDMLHISANGLDTVSAHEVL-TYLE--KYIAKEPVEKFVIGLPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MNG + + R F + + + V+ DER T+V A + +++ + +K R K V
Sbjct: 61 MNGQDSDSMQYIRPFATALQRKFPEIELVYVDERFTSVLAHKAMLEGGLKKKDRQNKELV 120
Query: 137 DSIAAALILQEVLDRI 152
D I+A +ILQ L+ I
Sbjct: 121 DKISATIILQSYLESI 136
>gi|300770445|ref|ZP_07080324.1| Holliday junction resolvase family protein [Sphingobacterium
spiritivorum ATCC 33861]
gi|300762921|gb|EFK59738.1| Holliday junction resolvase family protein [Sphingobacterium
spiritivorum ATCC 33861]
Length = 138
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 5/137 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTKRIG+A++DP + A+ + ++ L +++ TE + F++G P M+
Sbjct: 5 AFDYGTKRIGIAVTDPLQIVANALTTVHPDEIVDF---LKNYLQTEQVETFVVGKPRQMD 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138
GS+ F+ + + +P DER T+ A ++ + + KR QK VD+
Sbjct: 62 GSDSESASHVIGFIRLLKKQFPAIPVAEVDERFTSKMASAVIAQSGMKKGKRQQKGLVDT 121
Query: 139 IAAALILQEVLDRISFL 155
I+A +ILQ +D SFL
Sbjct: 122 ISATIILQSYMDSRSFL 138
>gi|169831078|ref|YP_001717060.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
audaxviator MP104C]
gi|226725511|sp|B1I373|RUVX_DESAP RecName: Full=Putative Holliday junction resolvase
gi|169637922|gb|ACA59428.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
audaxviator MP104C]
Length = 141
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D+G +RIG+A++D A+P L R + + I + + GLP
Sbjct: 3 LMGLDIGDRRIGVALTDENGVAAYPLEVLERTSPEKDLRRITEIIDQYGVERVVAGLPKT 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G GP+ +F+ + R VP + WDERLTT +++L+ ++ R++R + VD
Sbjct: 63 LSGQIGPQGDKVLSFLDKLRVRST-VPVITWDERLTTAEVEKLLVSADLGRRRRRKVVDK 121
Query: 139 IAAALILQEVLD 150
+AA LIL L+
Sbjct: 122 LAATLILNSYLN 133
>gi|227538919|ref|ZP_03968968.1| Holliday junction resolvase family protein [Sphingobacterium
spiritivorum ATCC 33300]
gi|227241122|gb|EEI91137.1| Holliday junction resolvase family protein [Sphingobacterium
spiritivorum ATCC 33300]
Length = 138
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GTKRIG+A++DP + A+ L + L +++ TE + F++G P
Sbjct: 3 LMAFDYGTKRIGIAVTDPLQIVANA---LTTVHPNEIFDFLKNYLQTEQVETFVVGKPRQ 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
M+GS+ F+ + + +P DER T+ A ++ + + KR QK V
Sbjct: 60 MDGSDSESASHVVGFIRLLKKQFPTIPVAEVDERFTSKMASAVIAQSGMKKGKRQQKGLV 119
Query: 137 DSIAAALILQEVLDRISFL 155
D+I+A +ILQ +D SFL
Sbjct: 120 DTISATIILQSYMDSRSFL 138
>gi|227894661|ref|ZP_04012466.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
DSM 16047]
gi|227863556|gb|EEJ70977.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
DSM 16047]
Length = 142
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+D+G+K +G+A+SD A + K L + + F++GLP N
Sbjct: 5 GLDVGSKTVGVAVSDELGITAQKLETIHIDETKYNFGMRPLKKLVRQYDPDGFVLGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRIQKV 136
M+G+ G V ++A+ + D K +P + DERLTT+ ++++L+ D + RKKR Q +
Sbjct: 65 MDGTSGASVARSKAYGKRLED-KFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRKQVI 123
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 124 DQMAAVLILQNYLD 137
>gi|329666848|gb|AEB92796.1| hypothetical protein LJP_0462 [Lactobacillus johnsonii DPC 6026]
Length = 143
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 17/140 (12%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75
+D+G+K +G+AISDP L K+ ++ ++ + ++ F++GL
Sbjct: 5 GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRK 130
P NM+GS G V ++ + + + K +P + DERLTTV A +IL++ V RK
Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKE-KFDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120
Query: 131 KRIQKVDSIAAALILQEVLD 150
K I D +AA LILQ L+
Sbjct: 121 KVI---DQMAAVLILQNYLE 137
>gi|325294689|ref|YP_004281203.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065137|gb|ADY73144.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 141
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G K+IG+A+SDP A+P + RK +T +LL I ++ IIG+P++
Sbjct: 4 VMALDVGFKKIGIAVSDPLLLTANPHSIIYRKSNKETFSKLLELIEKLDVGKIIIGIPIS 63
Query: 79 MNGSEGPRVHSTRAFVHN----MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
G E + F + +R + VF DE +++ A+++ + + K +
Sbjct: 64 SEGKETKMAEKIKKFALKLDSFLKERGKKIEIVFIDESYSSLEAKELCRFLGKTEK---E 120
Query: 135 KVDSIAAALILQEVL 149
++D IAAAL+L+E L
Sbjct: 121 EIDDIAAALMLKEWL 135
>gi|255008472|ref|ZP_05280598.1| Holliday junction resolvase-like protein [Bacteroides fragilis
3_1_12]
gi|313146201|ref|ZP_07808394.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313134968|gb|EFR52328.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 138
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74
I +ID G KR G+A+SD + A+ T + ELL FIT E + IIG
Sbjct: 4 IIAIDYGRKRTGIAVSDAMQIIAN-------GLTTVPSHELLDFITNYVKQEPVERIIIG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + + FV ++ R +P + DER T+V A + +I+ + +K R
Sbjct: 57 LPKQMNNEVSENMKNIEPFVRSLRKRLPDIPVEYVDERFTSVLAHRTMIEAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLDRISFLESSK 159
K VD I+A +ILQ S+LES +
Sbjct: 117 KALVDEISATIILQ------SYLESKR 137
>gi|295396123|ref|ZP_06806306.1| possible crossover junction endodeoxyribonuclease [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971064|gb|EFG46956.1| possible crossover junction endodeoxyribonuclease [Brevibacterium
mcbrellneri ATCC 49030]
Length = 147
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 2/139 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
ID+G R+G+A SDP A P + R+ AL + I E + +IG P ++
Sbjct: 8 GIDVGAVRVGIAHSDPDGILASPLEVVNRRGGDNIALRRIQEIVEEVDPVELVIGDPTSL 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G R F ++DR +P + DER TT A +L + + K+R + VD+
Sbjct: 68 DGKARQSADKARRFAQKIVDR-TGLPVRYVDERFTTTQAHLMLQEAGKTSKQRRETVDAQ 126
Query: 140 AAALILQEVLDRISFLESS 158
AA +ILQ LD ++ ++S
Sbjct: 127 AAVVILQTALDALAREDNS 145
>gi|288801321|ref|ZP_06406775.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str.
F0039]
gi|288331704|gb|EFC70188.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str.
F0039]
Length = 137
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
I +ID G KR GLA++D + A+ + T T E L ++I E + IIGLP
Sbjct: 4 ILAIDYGQKRTGLAVTDTLQLIANGLDTIP----THTLYEFLCAYIEKEPVERIIIGLPR 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
NG + FV + VP ++DER T+V A + +ID + +K R K
Sbjct: 60 QTNGLPSENMKRIEPFVARWKKHQPNVPIEYYDERFTSVLAHRAMIDGGLKKKARQDKAL 119
Query: 136 VDSIAAALILQEVLD 150
VD I+A +ILQ+ L+
Sbjct: 120 VDKISATIILQDYLE 134
>gi|89898213|ref|YP_515323.1| Holliday junction resolvase-like protein [Chlamydophila felis
Fe/C-56]
gi|146325561|sp|Q254W0|RUVX_CHLFF RecName: Full=Putative Holliday junction resolvase
gi|89331585|dbj|BAE81178.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
Length = 150
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D G +RIGLA + + P F+ K + TA L I ++ ++G P+ M
Sbjct: 13 VDYGQRRIGLAYAASPLFISLPIGFIEAGKTLEATAQSLAKIILEREVSCVVLGNPIPMQ 72
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQKVDSI 139
+ + + ++I +V V WDERL++ A+++L D +SRK+R K DS+
Sbjct: 73 IGQKSSLQEEILKISSLIQEFCHVDVVLWDERLSSAQAERMLKCDCGLSRKQRKGKTDSV 132
Query: 140 AAALILQEVLDRISFLESS 158
AA LIL +FLESS
Sbjct: 133 AATLIL------TNFLESS 145
>gi|15604904|ref|NP_219688.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
D/UW-3/CX]
gi|76788906|ref|YP_327992.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
A/HAR-13]
gi|237802608|ref|YP_002887802.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
B/Jali20/OT]
gi|237804530|ref|YP_002888684.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255310984|ref|ZP_05353554.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
6276]
gi|255317285|ref|ZP_05358531.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
6276s]
gi|6226795|sp|Q46370|RUVX_CHLTR RecName: Full=Putative Holliday junction resolvase
gi|146325562|sp|Q3KMH8|RUVX_CHLTA RecName: Full=Putative Holliday junction resolvase
gi|3328589|gb|AAC67776.1| YqgF Family [Chlamydia trachomatis D/UW-3/CX]
gi|76167436|gb|AAX50444.1| hypothetical cytosolic protein [Chlamydia trachomatis A/HAR-13]
gi|231272830|emb|CAX09739.1| putative Holliday junction resolvase [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231273842|emb|CAX10632.1| putative Holliday junction resolvase [Chlamydia trachomatis
B/Jali20/OT]
gi|296435699|gb|ADH17873.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
G/9768]
gi|296436623|gb|ADH18793.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
G/11222]
gi|296437559|gb|ADH19720.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
G/11074]
gi|297140058|gb|ADH96816.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
G/9301]
gi|297748314|gb|ADI50860.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-EC]
gi|297749194|gb|ADI51872.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-LC]
Length = 148
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 14 KPNQPIASIDLGTKRIGLAI-SDPGRRFAHPRPF---LVRKKVTQTALELLSFITTENIA 69
K Q ID G KRIGLA S P P P R +T TA L+S I +
Sbjct: 5 KQQQAFLGIDYGKKRIGLAFASSP---LLIPLPIGNVEARSSLTLTAQALVSIIKERAVT 61
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVS 128
+ G PL M + V S + +I + + WDERL++ A+++L D ++
Sbjct: 62 TVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLN 121
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
RK+R DS+AA LIL LD
Sbjct: 122 RKQRKNPSDSLAATLILSSFLD 143
>gi|42518572|ref|NP_964502.1| hypothetical protein LJ0476 [Lactobacillus johnsonii NCC 533]
gi|62900996|sp|Q74KV1|RUVX_LACJO RecName: Full=Putative Holliday junction resolvase
gi|41582857|gb|AAS08468.1| hypothetical protein LJ_0476 [Lactobacillus johnsonii NCC 533]
Length = 143
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 17/140 (12%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75
+D+G+K +G+AISDP L K+ ++ ++ + ++ F++GL
Sbjct: 5 GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGLRQIRRIVRKYDVEGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRK 130
P NM+GS G V ++ + + + K +P + DERLTTV A +IL++ V RK
Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKE-KFDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120
Query: 131 KRIQKVDSIAAALILQEVLD 150
K I D +AA LILQ L+
Sbjct: 121 KVI---DQMAAVLILQNYLE 137
>gi|152002513|dbj|BAF73537.1| predicted endonuclease [Onion yellows phytoplasma OY-W]
Length = 151
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIG 74
N +DLG K +G+A+S G + + F K + L I+ I ++G
Sbjct: 6 NNASLGLDLGEKTLGIALSQTGIIAQNLKTIFFATHKYDRLITPLQEIISQYQIKTIVLG 65
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +MN G + + F + ++ V + WDERL+TV A Q+L N + K +Q
Sbjct: 66 YPKHMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGKILQ 125
Query: 135 KVDSIAAALILQEVLDRISF 154
D IAA +ILQ LD I
Sbjct: 126 MKDEIAATIILQNYLDYIKL 145
>gi|149280102|ref|ZP_01886226.1| Holliday junction resolvase-like protein [Pedobacter sp. BAL39]
gi|149229116|gb|EDM34511.1| Holliday junction resolvase-like protein [Pedobacter sp. BAL39]
Length = 138
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 19 IASIDLGTKRIGLAISDP------GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
I + D GTKR+G+A++DP G HP+ + L ++ TE + AF+
Sbjct: 4 ILAFDYGTKRVGIAVTDPLQIIATGLDNVHPKDIIEY---------LKKYLLTEQVEAFV 54
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IG P M+GS + F + +P + DER T+ A Q ++ + ++ R
Sbjct: 55 IGDPKQMDGSPSESAQHIKGFARTLKKTFPDIPQFWVDERFTSKLAHQTILQSGLKKQDR 114
Query: 133 IQK--VDSIAAALILQEVLDR 151
K VD+IAA +ILQ +++
Sbjct: 115 KDKSRVDTIAATIILQYFMEQ 135
>gi|116629094|ref|YP_814266.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323]
gi|238853837|ref|ZP_04644202.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
gi|282852131|ref|ZP_06261488.1| RNAse YqgF [Lactobacillus gasseri 224-1]
gi|311111120|ref|ZP_07712517.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22]
gi|122273908|sp|Q045P4|RUVX_LACGA RecName: Full=Putative Holliday junction resolvase
gi|116094676|gb|ABJ59828.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323]
gi|238833532|gb|EEQ25804.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
gi|282556695|gb|EFB62300.1| RNAse YqgF [Lactobacillus gasseri 224-1]
gi|311066274|gb|EFQ46614.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22]
Length = 143
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 17/146 (11%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75
+D+G+K +G+AISDP L K+ ++ ++ + ++ F++GL
Sbjct: 5 GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGMRQIRKLVRKYDVEGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133
P NM+GS G V ++ + + + K +P + DERLTTV A +IL+ + V R +R
Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKE-KFDLPVHYMDERLTTVQADRILVQEAGVHDRVERK 120
Query: 134 QKVDSIAAALILQEVLDRISFLESSK 159
+ +D +AA LILQ S+LE+++
Sbjct: 121 KVIDQMAAVLILQ------SYLEATR 140
>gi|268318983|ref|YP_003292639.1| putative Holliday junction resolvase [Lactobacillus johnsonii
FI9785]
gi|262397358|emb|CAX66372.1| putative Holliday junction resolvase [Lactobacillus johnsonii
FI9785]
Length = 143
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 17/140 (12%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75
+D+G+K +G+AISDP L K+ ++ ++ + ++ F++GL
Sbjct: 5 GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRK 130
P NM+GS G V ++ + + K +P + DERLTTV A +IL++ V RK
Sbjct: 62 PKNMDGSSGHSVERSKQY-GGRLKEKFDLPVYYVDERLTTVQADRILVEEAGVHDRVERK 120
Query: 131 KRIQKVDSIAAALILQEVLD 150
K I D +AA LILQ L+
Sbjct: 121 KVI---DQMAAVLILQNYLE 137
>gi|189347877|ref|YP_001944406.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245]
gi|189342024|gb|ACD91427.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245]
Length = 142
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
SL + I +ID GTKRIG A SDP + FA P + R ++ + +L E I
Sbjct: 2 SLSRKKRIVAIDFGTKRIGFAESDPLQLFAQPVGTVDRAELFE---KLEQMARNEEIDKI 58
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++G PLN +G++ F+ + +P DE ++ A QIL +SRK+
Sbjct: 59 LVGYPLNDDGTQNRMTGVIDRFIEELALGFPGLPVERVDEHRSSRDAMQILAASGISRKE 118
Query: 132 RIQK--VDSIAAALILQEVLD 150
R +K +D AA +IL+E LD
Sbjct: 119 RNRKGRLDCAAACVILREYLD 139
>gi|282866221|ref|ZP_06275268.1| Holliday junction resolvase YqgF [Streptomyces sp. ACTE]
gi|282559005|gb|EFB64560.1| Holliday junction resolvase YqgF [Streptomyces sp. ACTE]
Length = 154
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 61/130 (46%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DP A P + + V L + ++GLP ++
Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGRIVEEYEPIEVVVGLPRSLG 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP RAF + VP DER++TV+A Q L V+ KK +D A
Sbjct: 68 GGEGPAAVKVRAFAQVLARAIAPVPVRLVDERMSTVTATQGLRASGVTSKKGRSVIDQAA 127
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 128 AVVILQNALE 137
>gi|255014065|ref|ZP_05286191.1| Holliday junction resolvase-like protein [Bacteroides sp. 2_1_7]
gi|256839599|ref|ZP_05545108.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262382117|ref|ZP_06075255.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298375296|ref|ZP_06985253.1| Holliday junction resolvase [Bacteroides sp. 3_1_19]
gi|301310690|ref|ZP_07216629.1| putative Holliday junction resolvase [Bacteroides sp. 20_3]
gi|256738529|gb|EEU51854.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262297294|gb|EEY85224.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298267796|gb|EFI09452.1| Holliday junction resolvase [Bacteroides sp. 3_1_19]
gi|300832264|gb|EFK62895.1| putative Holliday junction resolvase [Bacteroides sp. 20_3]
Length = 140
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 11/143 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A +D + A+ + +V + L +I+ E + F++GLP
Sbjct: 4 IIAIDYGRKRTGIAATDILQMIANGVATVPSGEVVKY---LSDYISREPVDLFVVGLPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN + AFV ++ +P ++DER T+V A + +++ + +KKR K V
Sbjct: 61 MNNEPSENMKYVEAFVTHLKRTIPSIPVTYYDERFTSVLAHKAMLEGGLKKKKRQDKGLV 120
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D I+A +ILQ ++LES K
Sbjct: 121 DEISAVIILQ------AYLESKK 137
>gi|326335222|ref|ZP_08201418.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325692630|gb|EGD34573.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 148
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
LK I +ID GTKR G+A++D + A L + T+ L + +E++ I
Sbjct: 10 LKAQMRILAIDYGTKRCGIAVTDELKLIASA---LATVETTELLDFLQQYCQSESVERII 66
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLP +G + +F+ + ++ +P +DER T+ A IL++ +KKR
Sbjct: 67 IGLPKQTSGEPSESEAAIVSFMEKLQEKLPEIPVSRYDERFTSKIASHILVESGTKKKKR 126
Query: 133 IQK--VDSIAAALILQEVL 149
K +D I+A LILQ+ L
Sbjct: 127 QDKALLDRISATLILQDYL 145
>gi|300865579|ref|ZP_07110357.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC
6506]
gi|300336413|emb|CBN55507.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC
6506]
Length = 170
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KRIG+A D A + R + + +T + + GLP NMN
Sbjct: 11 GLDIGQKRIGVAGCDGTGLIATGLGTIARSSFDKDVAQFRQLVTERGVQVLVSGLPYNMN 70
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ G + + + + + +P + DERLT++ A+Q+++ +S + +D A
Sbjct: 71 GTLGFQARQVQKYASRLAS-ALALPLEYVDERLTSIQAEQLMLTEKISPSRNKALIDRKA 129
Query: 141 AALILQEVLD 150
AA+ILQ+ LD
Sbjct: 130 AAIILQQWLD 139
>gi|300362249|ref|ZP_07058425.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
JV-V03]
gi|300353240|gb|EFJ69112.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
JV-V03]
Length = 143
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 17/146 (11%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75
+D+G+K +G+AISDP L K+ ++ ++ + ++ F++GL
Sbjct: 5 GLDVGSKTVGVAISDP---LGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV-SRKKRI 133
P NM+GS G V ++ + + + K +P + DERLTTV A +IL+ + V R +R
Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKE-KFDLPVHYMDERLTTVQADRILVQEAGVHDRVERK 120
Query: 134 QKVDSIAAALILQEVLDRISFLESSK 159
+ +D +AA LILQ S+LE+++
Sbjct: 121 KVIDQMAAVLILQ------SYLEATR 140
>gi|113477781|ref|YP_723842.1| Holliday junction resolvase-like protein [Trichodesmium erythraeum
IMS101]
gi|110168829|gb|ABG53369.1| Holliday junction resolvase YqgF [Trichodesmium erythraeum IMS101]
Length = 149
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KR+G+A D A + R + +L + + I+GLP +MN
Sbjct: 10 GLDVGIKRMGVAGCDGTGLIATGIMTIKRASFEKDVFQLQKIVQERQVQVLIVGLPYSMN 69
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS G + + + + + + +P + DERLT+V A+++L N+S + +D A
Sbjct: 70 GSIGFQAKKVQRYAQRL-SQTLGLPLEYVDERLTSVQAEEMLKAANISPSQNKALIDRKA 128
Query: 141 AALILQEVLD 150
AALILQ+ LD
Sbjct: 129 AALILQQWLD 138
>gi|160945990|ref|ZP_02093216.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii
M21/2]
gi|158443721|gb|EDP20726.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii
M21/2]
Length = 143
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAH---PRPFL-VRKKVTQTALELLSFITTENIAAFIIG 74
I ++D G R GLA D P+ L R KV E+ I E I +IG
Sbjct: 3 ILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIEAEMI---LIG 59
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+EG R +R ++ +P WDER TT +A +L + +R +
Sbjct: 60 LPLNMDGTEGERAAKSRKLAKT-VELWSGLPVRMWDERQTTCAAADLLDESGTYGSRRKE 118
Query: 135 KVDSIAAALILQEVL 149
+DS++A +IL++ L
Sbjct: 119 ILDSVSATVILEDYL 133
>gi|146296781|ref|YP_001180552.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|167012707|sp|A4XKC6|RUVX_CALS8 RecName: Full=Putative Holliday junction resolvase
gi|145410357|gb|ABP67361.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 138
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 18/144 (12%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPL 77
I +D+G++RIG+AISDP + A P F V + L I E+ I +IG P+
Sbjct: 3 ILCLDIGSRRIGVAISDPLKIAAQP--FCVLDLQKEDLYSCLDKIFNEHQIEKIVIGYPV 60
Query: 78 NMNGSEGPRVHSTRAF--------VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
+ + H +A + + ++R+ V + WDER +T + ++IL + NVS
Sbjct: 61 S-------KFHPDKATEKLQKIDEICSELERRYKVGIIKWDERFSTKAVERILREENVSW 113
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
+KR + VD +AA ILQ LD I+
Sbjct: 114 QKRKKVVDKLAAVYILQGYLDFIN 137
>gi|303237217|ref|ZP_07323787.1| RNAse H domain protein, YqgF family [Prevotella disiens FB035-09AN]
gi|302482604|gb|EFL45629.1| RNAse H domain protein, YqgF family [Prevotella disiens FB035-09AN]
Length = 139
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I S+D G KR GLA++DP + A+ LV ++ L ++ EN+ ++G P
Sbjct: 4 ILSVDYGKKRTGLAVTDPLQIIANG---LVTVATSELFDFLKDYVQRENVECIVVGRPTQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
+NG + FV+ +P ++DER T+ AQQ ++ V +K R +
Sbjct: 61 LNGQPSENLSRVEQFVNRWRKAMPLIPVEYYDERFTSALAQQAILAGGVKKKMRREDKGL 120
Query: 136 VDSIAAALILQEVL 149
VD ++A +ILQ+ +
Sbjct: 121 VDEVSATIILQDYM 134
>gi|257784263|ref|YP_003179480.1| Holliday junction resolvase YqgF [Atopobium parvulum DSM 20469]
gi|257472770|gb|ACV50889.1| Holliday junction resolvase YqgF [Atopobium parvulum DSM 20469]
Length = 140
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G RIG+A+SDP A P L ++V A + + + G P
Sbjct: 3 VLALDIGEVRIGVAVSDPDGAIASPVCVLPAQEVLSHARTFKTVLEDWEPELLLCGRPKT 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ G +GP+ I + +P F DERL++ A++IL +S K KVD
Sbjct: 63 LAGEDGPQAQKITVQAEQ-IAKNCQLPLEFTDERLSSAEAKKILRAQGLSEKAMRGKVDM 121
Query: 139 IAAALILQEVLD 150
+AA+L LQ LD
Sbjct: 122 VAASLFLQSWLD 133
>gi|71893554|ref|YP_279000.1| hypothetical protein MHJ_0198 [Mycoplasma hyopneumoniae J]
gi|72080541|ref|YP_287599.1| hypothetical protein MHP7448_0202 [Mycoplasma hyopneumoniae 7448]
Length = 130
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 27 KRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNMNGSEG 84
K G AISD + ++P F + + + ++F E I+ ++G PL + G
Sbjct: 2 KTCGFAISDQNWKISYPLEQFNFNRYDFASVISRIAFWMKEYPISILVLGYPLTLAGKIS 61
Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
PR F +++ + + VF DERLTT AQ L+D+ +S KKR + +D +AA +I
Sbjct: 62 PRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGISFKKRQKVIDKLAAQII 120
Query: 145 LQEVLDRISFLESSKG 160
L+ FL + KG
Sbjct: 121 LER------FLNTKKG 130
>gi|295103244|emb|CBL00788.1| conserved hypothetical protein TIGR00250 [Faecalibacterium
prausnitzii SL3/3]
Length = 143
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAH---PRPFL-VRKKVTQTALELLSFITTENIAAFIIG 74
I ++D G R GLA D P+ L R KV E+ I E I +IG
Sbjct: 3 ILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIEAEMI---LIG 59
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+EG R +R ++ +P WDER TT +A +L + +R +
Sbjct: 60 LPLNMDGTEGERAAKSRKLAKT-VELWSGLPVRMWDERQTTCAAADLLDESGTYGSRRKE 118
Query: 135 KVDSIAAALILQEVL 149
+DS++A +IL++ L
Sbjct: 119 ILDSVSATVILEDYL 133
>gi|159037444|ref|YP_001536697.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205]
gi|157916279|gb|ABV97706.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205]
Length = 153
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFIIG 74
+D+G R+G+A SDP A P L R + V EL + + ++G
Sbjct: 11 GVDVGQVRVGVARSDPHGVLATPLVTLARDRDAAPDAVPSDIAELAALVAEHEAVEVVVG 70
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP+N+ G GP + +V +++ VP DER++TV A + L + V +++
Sbjct: 71 LPVNLAGRHGPAAVQVQEYVGRLVEVISPVPVTLADERMSTVVASRRLAERGVRGRRQRA 130
Query: 135 KVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 131 VVDQAAAVEILQSWLD 146
>gi|62185187|ref|YP_219972.1| Holliday junction resolvase-like protein [Chlamydophila abortus
S26/3]
gi|81312649|sp|Q5L5S0|RUVX_CHLAB RecName: Full=Putative Holliday junction resolvase
gi|62148254|emb|CAH64019.1| putative Holliday junction resolvase [Chlamydophila abortus S26/3]
Length = 150
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79
+D G +RIGLA + + P F+ K + +LL I E ++ ++G PL M
Sbjct: 12 GVDYGERRIGLAYAAYPLGISLPIGFIATGKTLEATAKLLVGIIQERRVSTVVLGNPLPM 71
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDS 138
+ + + +++ V + WDERL++ A+++L D +SRKKR K DS
Sbjct: 72 QKGQKSALQEDILKLSSLLQESCPVEVILWDERLSSAQAERMLKGDCGLSRKKRKGKTDS 131
Query: 139 IAAALILQEVLDRISFLESS 158
IAA LIL SFLE S
Sbjct: 132 IAATLIL------TSFLEHS 145
>gi|118597207|sp|Q6NGZ8|RUVX_CORDI RecName: Full=Putative Holliday junction resolvase
Length = 171
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 17/151 (11%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTEN-IAAFIIGL 75
+D+GT RIGLA+SD G R A P L R K + ++ ++ + +N I ++GL
Sbjct: 20 GVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICDNHIVEVVVGL 79
Query: 76 P--LNMNGSEGPRVHSTRAFVHNMIDRKVY------VPFVFWDERLTTVSAQQILIDMNV 127
P L NGS+ + AF I R+++ V DERLTTV A Q L V
Sbjct: 80 PRDLKGNGSKSVKHAKDVAF---RIRRRMHKNGWEHVAVKMADERLTTVVATQALRASGV 136
Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLES 157
S KK + VD AA ILQ LD RI+ LE+
Sbjct: 137 SEKKGRRVVDQAAAVEILQSWLDARINVLEN 167
>gi|17230592|ref|NP_487140.1| Holliday junction resolvase-like protein [Nostoc sp. PCC 7120]
gi|75910008|ref|YP_324304.1| Holliday junction resolvase-like protein [Anabaena variabilis ATCC
29413]
gi|32130049|sp|Q8YSI5|RUVX_ANASP RecName: Full=Putative Holliday junction resolvase
gi|146325551|sp|Q3M6H7|RUVX_ANAVT RecName: Full=Putative Holliday junction resolvase
gi|17132194|dbj|BAB74799.1| alr3100 [Nostoc sp. PCC 7120]
gi|75703733|gb|ABA23409.1| Holliday junction resolvase YqgF [Anabaena variabilis ATCC 29413]
Length = 151
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KR+G+A D A + R + ++ + + + ++GLP +M+
Sbjct: 9 GLDVGRKRVGVAGCDRTGLIATGITTVERTSFDRDVQQIQNIVNERQVQVLVVGLPYSMD 68
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS G + + F + + + +P + DERLT+ A+Q+LI NVS + +D A
Sbjct: 69 GSLGFQARQVQKFTSRLA-KALQLPVEYVDERLTSFQAEQMLIAENVSPSRNKGLIDRKA 127
Query: 141 AALILQEVLD 150
AALILQ+ LD
Sbjct: 128 AALILQQWLD 137
>gi|53712972|ref|YP_098964.1| Holliday junction resolvase-like protein [Bacteroides fragilis
YCH46]
gi|60681184|ref|YP_211328.1| Holliday junction resolvase-like protein [Bacteroides fragilis NCTC
9343]
gi|253563050|ref|ZP_04840507.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|265763069|ref|ZP_06091637.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|62900958|sp|Q64VP6|RUVX_BACFR RecName: Full=Putative Holliday junction resolvase
gi|81315746|sp|Q5LER0|RUVX_BACFN RecName: Full=Putative Holliday junction resolvase
gi|52215837|dbj|BAD48430.1| putative endonuclease [Bacteroides fragilis YCH46]
gi|60492618|emb|CAH07390.1| putative Holliday junction resolvase [Bacteroides fragilis NCTC
9343]
gi|251946826|gb|EES87108.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|263255677|gb|EEZ27023.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301162673|emb|CBW22220.1| putative Holliday junction resolvase [Bacteroides fragilis 638R]
Length = 138
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 13/138 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74
I +ID G KR G+A+SD + A+ T ELL FIT E++ IIG
Sbjct: 4 IVAIDYGRKRTGIAVSDTMQIIANGL-------TTVPTHELLDFITNYVKQESVERIIIG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 57 LPKQMNNEVSENMKNIEPFVRSLKKRLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLD 150
K VD I+A +ILQ L+
Sbjct: 117 KALVDEISATIILQSYLE 134
>gi|239978414|ref|ZP_04700938.1| hypothetical protein SalbJ_03203 [Streptomyces albus J1074]
gi|291450310|ref|ZP_06589700.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291353259|gb|EFE80161.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 158
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A DP A P + + V L + + ++GLP ++
Sbjct: 12 AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLAALVEEYEPIEVVVGLPRSLK 71
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R F + VP DER++TV+A Q + V KK +D A
Sbjct: 72 GGEGPAAVKVRGFAQELARTIAPVPVRLVDERMSTVTAAQGMRASGVRSKKGRAVIDQAA 131
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 132 AVVILQSALE 141
>gi|38233935|ref|NP_939702.1| Holliday junction resolvase-like protein [Corynebacterium
diphtheriae NCTC 13129]
gi|38200196|emb|CAE49877.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 183
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 17/151 (11%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTEN-IAAFIIGL 75
+D+GT RIGLA+SD G R A P L R K + ++ ++ + +N I ++GL
Sbjct: 32 GVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICDNHIVEVVVGL 91
Query: 76 P--LNMNGSEGPRVHSTRAFVHNMIDRKVY------VPFVFWDERLTTVSAQQILIDMNV 127
P L NGS+ + AF I R+++ V DERLTTV A Q L V
Sbjct: 92 PRDLKGNGSKSVKHAKDVAF---RIRRRMHKNGWEHVAVKMADERLTTVVATQALRASGV 148
Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLES 157
S KK + VD AA ILQ LD RI+ LE+
Sbjct: 149 SEKKGRRVVDQAAAVEILQSWLDARINVLEN 179
>gi|281420285|ref|ZP_06251284.1| putative Holliday junction resolvase [Prevotella copri DSM 18205]
gi|281405587|gb|EFB36267.1| putative Holliday junction resolvase [Prevotella copri DSM 18205]
Length = 137
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74
I SID G KR GLA++DP + A+ T + EL ++I T E + +IG
Sbjct: 3 ILSIDYGKKRTGLAVTDPLQIIAN-------GLATVSTHELFTYIETYIQKEQVERIVIG 55
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P+ NG + F + +P ++DER T+V A + +ID V +K R +
Sbjct: 56 KPMQPNGQPSENLARVENFYNRWRKAHPEIPIEYYDERFTSVLAHRAMIDGGVKKKVRKE 115
Query: 135 K---VDSIAAALILQEVL 149
VD I+A +ILQ+ L
Sbjct: 116 NKGLVDEISATIILQDYL 133
>gi|50365281|ref|YP_053706.1| Holliday junction resolvase [Mesoplasma florum L1]
gi|62900971|sp|Q6F101|RUVX_MESFL RecName: Full=Putative Holliday junction resolvase
gi|50363837|gb|AAT75822.1| possible Holliday junction resolvase [Mesoplasma florum L1]
Length = 142
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
I +D+G+K IGLA S G + + + LL+ FI ++ F+ G P
Sbjct: 4 ILGLDVGSKTIGLA-SSTGNVAKKEINLKFEEWNFEEGVSLLTEFIKDKSFDTFVFGYPK 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVP------FVFWDERLTTVSAQQILIDMNVSRKK 131
NMNGS G R F+ + VY P + DER TT A+ I+I+ +SR+K
Sbjct: 63 NMNGSIGERAEMVDYFIEGFM---VYNPEIKEEQIIRIDERRTTKMAKSIMIEAGLSRQK 119
Query: 132 RIQKVDSIAAALILQEVLDRI 152
+ + D++AA LIL+ L++I
Sbjct: 120 QKENKDTLAAQLILETYLEKI 140
>gi|258405254|ref|YP_003197996.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM
5692]
gi|257797481|gb|ACV68418.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM
5692]
Length = 142
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78
ID G KR+GLA+SD P + R T+ AL ELL++I T I A +IGLP +
Sbjct: 5 GIDFGLKRVGLALSDSQATVVTPLATVQRS--TRQALFEELLAYIETYAIEAVVIGLPYD 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ G+ R F ++ R++ +P + DE LT+ A + L + V R KR +D
Sbjct: 63 LEGTATLTTRQARNFGTSLA-RRIALPIYYVDEVLTSEFAGEALREAGVPRHKRKDLLDQ 121
Query: 139 IAAALILQEVL 149
AA IL+ L
Sbjct: 122 HAAVAILESFL 132
>gi|330995382|ref|ZP_08319292.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT
11841]
gi|329575877|gb|EGG57401.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT
11841]
Length = 141
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +ID G KR G+A++DP + A+ + V ++S++ E++ ++G P
Sbjct: 4 VLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDF---IVSYVQQEHVERIVVGQPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
NG + + +FV + +R +P F+DER T+V A Q ++ + +K R K V
Sbjct: 61 ANGEDSENMGRINSFVRRLHERLPEIPVEFFDERYTSVLAHQAMLQGGLRKKARQNKALV 120
Query: 137 DSIAAALILQ 146
D I+A +ILQ
Sbjct: 121 DEISATIILQ 130
>gi|158313531|ref|YP_001506039.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec]
gi|158108936|gb|ABW11133.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec]
Length = 188
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL----ELLSFITTENIAAFIIGLP 76
+D+G+ R+G+A+SDP A P L R+ V++ EL + + ++GLP
Sbjct: 33 GVDVGSVRVGVAVSDPDGLLAVPVTTL-RRDVSRRGFADVDELADIVRDRHAVEVVVGLP 91
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+++G EG V R + + R VP DERLTTV A + + + + + R V
Sbjct: 92 RHLSGREGEAVRLARRYAEVLSARVAPVPVRLVDERLTTVVAHRRMAERGLRSRARRDLV 151
Query: 137 DSIAAALILQEVLD 150
D AA ILQ LD
Sbjct: 152 DQEAAVQILQHHLD 165
>gi|332878326|ref|ZP_08446052.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683777|gb|EGJ56648.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 136
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I SID GTKR GLA++DP + A L Q L + E + AF+IGLP
Sbjct: 3 ILSIDYGTKRTGLAVTDPLKLIASG---LTTVDTPQLLPFLEKYTAEEAVEAFVIGLPKR 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
+N + + + + +R + +DER T+ A Q +ID + +K+R K +
Sbjct: 60 LNNEDSAVEADIQQLLTKLKERFPTIKIHRYDERFTSKIAFQTMIDSGLKKKQRQNKALI 119
Query: 137 DSIAAALILQEVLD 150
D I+A LILQ+ L+
Sbjct: 120 DEISATLILQDFLN 133
>gi|303246564|ref|ZP_07332842.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ]
gi|302491904|gb|EFL51782.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ]
Length = 147
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78
+ID G R+GLA++DP R P L + T+ AL ELL+ I+ + + ++G P+
Sbjct: 6 AIDYGQARVGLAVTDPEARVVFPLRTLAWE--TRDALFHELLAVISDQAVTRIVVGYPMR 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G EG R FV + R+ VP DE +T A + L + + K+ + +VD+
Sbjct: 64 AGGDEGLTGRQVRNFVSRLT-RRTTVPVELVDEAHSTEEAAERLREAGYAGKELLARVDA 122
Query: 139 IAAALILQEVL 149
AAA+IL+ L
Sbjct: 123 QAAAVILERYL 133
>gi|291009599|ref|ZP_06567572.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
2338]
Length = 158
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
ID+G R+G+A+SDP A P L R L L+ + + ++G+P +
Sbjct: 17 GIDVGAVRVGVALSDPAPMLATPLVTLQRDVEGGGDLGRLVEIVAEHEVVEVVVGMPRTL 76
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G GP + ++ + +R VP V+ DERLTTV+A ++L V KK+ VD
Sbjct: 77 AGRHGPAAEAAESYGTALAERIAPVPVVYSDERLTTVTASRMLSKRGVRGKKQRAVVDQA 136
Query: 140 AAALILQEVLD 150
AA ILQ LD
Sbjct: 137 AAVEILQAWLD 147
>gi|160889624|ref|ZP_02070627.1| hypothetical protein BACUNI_02050 [Bacteroides uniformis ATCC 8492]
gi|317479181|ref|ZP_07938318.1| hypothetical protein HMPREF1007_01434 [Bacteroides sp. 4_1_36]
gi|156860616|gb|EDO54047.1| hypothetical protein BACUNI_02050 [Bacteroides uniformis ATCC 8492]
gi|316904669|gb|EFV26486.1| hypothetical protein HMPREF1007_01434 [Bacteroides sp. 4_1_36]
Length = 141
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A+SD + A+ + ++ Q LL ++ E + ++GLP
Sbjct: 4 IIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLQF---LLDYVAKEPVERILVGLPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN + + FV ++ + +P + DER T+V A + +++ + +K R K V
Sbjct: 61 MNNEASENMKNIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNKALV 120
Query: 137 DSIAAALILQEVLD--RISFL 155
D I+A +ILQ L+ R SFL
Sbjct: 121 DEISATIILQTYLENKRFSFL 141
>gi|300784620|ref|YP_003764911.1| holliday junction resolvase [Amycolatopsis mediterranei U32]
gi|299794134|gb|ADJ44509.1| putative holliday junction resolvase [Amycolatopsis mediterranei
U32]
Length = 133
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 31 LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNMNGSEGPRVHS 89
+A+SDP A P L R T L+ L+ + TE+ + I+GLP + +GP
Sbjct: 1 MALSDPAPVLASPLVTLSRDATDDTDLDQLAALVTEHEVVEVIVGLPRTLANRQGPAAEL 60
Query: 90 TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
A+ + R VP DERLTTV+A +IL V +K+ VD AA ILQ +
Sbjct: 61 AIAYSERLAGRIAPVPVRLGDERLTTVTASRILSQRGVKGRKQRAVVDQAAAVEILQAWI 120
Query: 150 DRISFLESSKG 160
D + + +G
Sbjct: 121 DAAAAHRAREG 131
>gi|326514774|dbj|BAJ99748.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 199
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VT 53
M +L E+L + L K + +D+G+K +GLA+SD R A P L R K +
Sbjct: 13 MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 72
Query: 54 QTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDE 111
A + + + ++A ++G P N+ G P V + + + +WDE
Sbjct: 73 LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 132
Query: 112 RLTTVSAQQILIDMNVSRKKRIQKV-DSIAAALILQEVLDRIS 153
T+ + +L +N++ + + + D AA ILQ LD ++
Sbjct: 133 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMN 175
>gi|7529715|emb|CAB86895.1| putative protein [Arabidopsis thaliana]
Length = 548
Score = 66.6 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL-N 78
+D+G K +GLAISDP A P L+RKK + A + + + +++ ++G P
Sbjct: 405 LDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAFSVSGLVVGYPFGK 464
Query: 79 MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+N E V + F+ + ++ V + +WDERL++ + + +L +N+ + +
Sbjct: 465 LNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQEKTML 522
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQE LD
Sbjct: 523 DKLAAVVILQEYLD 536
>gi|297242855|ref|ZP_06926793.1| endonuclease [Gardnerella vaginalis AMD]
gi|296889066|gb|EFH27800.1| endonuclease [Gardnerella vaginalis AMD]
Length = 124
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-----------YVPF 106
E+L I N+ +IGLPL ++G+EG + N+I R Y+P
Sbjct: 13 EVLEVIEDNNVEKVVIGLPLQLDGTEGKSAKKALRWGKNLIKRMQILHDEKDWALDYMPE 72
Query: 107 VFW-DERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
V W DERLTTVSA + L+ ++S KK VD +A LILQ LD
Sbjct: 73 VVWKDERLTTVSAHRQLLQADLSTKKHRPMVDQQSAVLILQSALD 117
>gi|297820018|ref|XP_002877892.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp.
lyrata]
gi|297323730|gb|EFH54151.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp.
lyrata]
Length = 542
Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL-N 78
+D+G K +GLAISDP A P L+RKK + A + + + +++ ++G P
Sbjct: 399 LDVGDKYVGLAISDPSNMVASPLSVLLRKKTNIDLMATDFQNLVKAFSVSGLVVGYPFGK 458
Query: 79 MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+N E V + F+ + ++ V + +WDERL++ + + +L +N+ + +
Sbjct: 459 LNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQEKTML 516
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQE LD
Sbjct: 517 DKLAAVVILQEYLD 530
>gi|212691279|ref|ZP_03299407.1| hypothetical protein BACDOR_00770 [Bacteroides dorei DSM 17855]
gi|237712292|ref|ZP_04542773.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237726431|ref|ZP_04556912.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|265752000|ref|ZP_06087793.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212666511|gb|EEB27083.1| hypothetical protein BACDOR_00770 [Bacteroides dorei DSM 17855]
gi|229434957|gb|EEO45034.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229453613|gb|EEO59334.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263236792|gb|EEZ22262.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 139
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A++D + A+ L Q +L ++ E + I+G P
Sbjct: 4 ILAIDYGKKRTGVAVTDVLQIIANG---LTTVPTHQLLDFILKYVEKEPVERIIVGHPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN E + + FV+ + + +P F DER T+V A Q ++D + +K R K V
Sbjct: 61 MNNQESENMRNIVPFVNQLRKKLPDIPIEFVDERFTSVLAHQAMLDGGLKKKDRQNKALV 120
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D I+A +ILQ S+LES K
Sbjct: 121 DEISATIILQ------SYLESKK 137
>gi|15606654|ref|NP_214034.1| hypothetical protein aq_1498 [Aquifex aeolicus VF5]
gi|6226434|sp|O67469|RUVX_AQUAE RecName: Full=Putative Holliday junction resolvase
gi|2983890|gb|AAC07442.1| hypothetical protein aq_1498 [Aquifex aeolicus VF5]
Length = 131
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D GTKR+GLAI D + P+ + K+ + E+ + + I+GLPL
Sbjct: 3 VLAVDYGTKRVGLAIGDEELKIVSPKGTVSSKEAVKKIKEI---VEKSRVGKVIVGLPLT 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G EG R + FV + + + WDER TT A + L + KK+ + D
Sbjct: 60 PSGKEGQRAKLVKDFVEKLREELPNTEIILWDERWTTAEAMRRL--EGLPPKKKKELKDV 117
Query: 139 IAAALILQEVLDRI 152
I+A +IL+E L+ +
Sbjct: 118 ISAMIILEEYLNSV 131
>gi|288918209|ref|ZP_06412564.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f]
gi|288350379|gb|EFC84601.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f]
Length = 200
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+ R+G+A SDP A P L R + + EL + + ++GLP
Sbjct: 45 GVDVGSVRVGVAASDPDGLLAVPVTTLRRDASGRRHKDVDELADIVRDRHAVEVVVGLPR 104
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
++G EG V R + + R VP DERLTTV A + + + + + R + VD
Sbjct: 105 QLSGEEGEAVRRARQYAEVLSTRVAPVPVRLVDERLTTVVAHRRMAERGLRSRARRELVD 164
Query: 138 SIAAALILQEVLD 150
AA ILQ LD
Sbjct: 165 QEAAVQILQHHLD 177
>gi|326531638|dbj|BAJ97823.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 187
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VT 53
M +L E+L + L K + +D+G+K +GLA+SD R A P L R K +
Sbjct: 1 MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 60
Query: 54 QTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDE 111
A + + + ++A ++G P N+ G P V + + + +WDE
Sbjct: 61 LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 120
Query: 112 RLTTVSAQQILIDMNVSRKKRIQKV-DSIAAALILQEVLDRIS 153
T+ + +L +N++ + + + D AA ILQ LD ++
Sbjct: 121 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMN 163
>gi|295085224|emb|CBK66747.1| conserved hypothetical protein TIGR00250 [Bacteroides xylanisolvens
XB1A]
Length = 138
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 13/142 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
I +ID G KR G+A+SD + A+ T + ELL+FI E + IIG
Sbjct: 4 IVAIDYGRKRTGIAVSDTMQLIANGL-------TTVSTHELLNFIGEYMAKEPVERIIIG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 57 LPKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLDRISF 154
K VD I+A +ILQ L+ F
Sbjct: 117 KALVDEISATIILQTYLESKRF 138
>gi|311742343|ref|ZP_07716152.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM
15272]
gi|311313971|gb|EFQ83879.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM
15272]
Length = 149
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
+D+G RIG+A+ DP A P + LL + + ++GLPL+++G
Sbjct: 1 MDVGDVRIGVAMCDPDGMIATPVETVPAGPAAHA--RLLQIASEIEVVEIVVGLPLSLSG 58
Query: 82 SEGPRVHSTRAFVH---NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
EGP RAFV M DR P DERL+TV+A L D + + + +D
Sbjct: 59 REGPAAGKVRAFVQVLAAMSDR----PVRLVDERLSTVTAGSQLRDSGRTGRGTRRVIDQ 114
Query: 139 IAAALILQEVLD 150
AA +ILQ LD
Sbjct: 115 AAAVVILQNALD 126
>gi|297564704|ref|YP_003683676.1| Holliday junction resolvase YqgF [Meiothermus silvanus DSM 9946]
gi|296849153|gb|ADH62168.1| Holliday junction resolvase YqgF [Meiothermus silvanus DSM 9946]
Length = 135
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+A++D+G RIGLA+ + G +A R +LVR+ L L +F E +A I+GLPL
Sbjct: 3 VAALDVGEARIGLAVGEVGSPWAFGRGYLVRRTPQADVLALRAFAERERVAKLIVGLPLR 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+ P + R R+ + DER TT Q L + ++ K+D
Sbjct: 63 TDGT--PSAQAARVLELVRALREAGLEVETLDERFTTQLGAQRLKEAPRRVRQEKGKLDE 120
Query: 139 IAAALILQEVLDR 151
AA +L+ L+R
Sbjct: 121 AAAVALLESYLER 133
>gi|148272983|ref|YP_001222544.1| Holliday junction resolvase-like protein [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|167012711|sp|A5CRZ4|RUVX_CLAM3 RecName: Full=Putative Holliday junction resolvase
gi|147830913|emb|CAN01857.1| putative Hollyday junction resolvase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 161
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
++D+G RIGLA SDP A P + R + + + TE + A ++GLPL +
Sbjct: 8 AVDVGKARIGLARSDPHGLIATPVETVPRDPAGSADVRRILAVATEIDCAELVVGLPLAL 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G F + D +P DERL+TVSAQ L +K+ +D +
Sbjct: 68 SGRATASTDDAEGFARRLAD-ATEIPVRLVDERLSTVSAQGALRASGRGSRKQKPVIDQV 126
Query: 140 AAALILQEVLD 150
AA +ILQ L+
Sbjct: 127 AAVIILQHALE 137
>gi|295100354|emb|CBK97899.1| conserved hypothetical protein TIGR00250 [Faecalibacterium
prausnitzii L2-6]
Length = 143
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLV---RKKVTQTALELLSFITTENIAAFIIG 74
I ++D G R GLA D P P + R KV E+ I E I +IG
Sbjct: 3 ILAVDYGDSRTGLATCDRTEFLTSPITPQITVKARDKVAARVCEVAKEIEAELI---VIG 59
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+EG R +R ++ +P WDER TT +A +L + KR
Sbjct: 60 LPLNMDGTEGERARKSRKLAKT-VEIWSGLPVRMWDERQTTCAAADLLDESGTFGAKRKS 118
Query: 135 KVDSIAAALILQEVL 149
+DS++A +IL + +
Sbjct: 119 ILDSVSATVILDDYI 133
>gi|115440129|ref|NP_001044344.1| Os01g0764700 [Oryza sativa Japonica Group]
gi|57899566|dbj|BAD87145.1| unknown protein [Oryza sativa Japonica Group]
gi|113533875|dbj|BAF06258.1| Os01g0764700 [Oryza sativa Japonica Group]
gi|215701312|dbj|BAG92736.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 178
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78
+D+G+K +GLA+SD R A P L R K ++ A + ++ ++ ++A F++G P N
Sbjct: 26 GLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNISLMADDFVTLVSKYSLAGFVVGYPFN 85
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ G P R V + + + +WDE T+ + +L + + + +
Sbjct: 86 LQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDENFTSKCVEALLHPLKLHDPVETKTM 145
Query: 137 -DSIAAALILQEVLDRIS 153
D AA ILQ LD ++
Sbjct: 146 TDKFAAVCILQRYLDNMN 163
>gi|291297317|ref|YP_003508715.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279]
gi|290472276|gb|ADD29695.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279]
Length = 136
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G RIGLA+ + G +A R +LVRK + L +F E F++GLPL
Sbjct: 3 VVALDVGEARIGLAVGEIGSPWAFGRGYLVRKNLEADLEALAAFAERERAERFVVGLPLR 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G + +A V M +R + + + DER TT Q L ++ K+D
Sbjct: 63 TDGRPSAQAERVQALVEAMRERGMQLELL--DERYTTKLGQNRLKHAPKRIRQEKGKLDE 120
Query: 139 IAAALILQEVLDRIS 153
AA +L+ L R+
Sbjct: 121 AAAIALLESYLARVG 135
>gi|145332817|ref|NP_001078274.1| DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic
acid binding / recombinase [Arabidopsis thaliana]
gi|26449955|dbj|BAC42098.1| unknown protein [Arabidopsis thaliana]
gi|332645487|gb|AEE79008.1| Polynucleotidyl transferase/ ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 170
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78
+D+G K +GLAISDP A P L+RKK + A + + + +++ ++G P
Sbjct: 26 GLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAFSVSGLVVGYPFG 85
Query: 79 -MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+N E V + F+ + ++ V + +WDERL++ + + +L +N+ +
Sbjct: 86 KLNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQEKTM 143
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQE LD
Sbjct: 144 LDKLAAVVILQEYLD 158
>gi|110637112|ref|YP_677319.1| Holliday junction resolvase-like protein [Cytophaga hutchinsonii
ATCC 33406]
gi|118597208|sp|Q11X87|RUVX_CYTH3 RecName: Full=Putative Holliday junction resolvase
gi|110279793|gb|ABG57979.1| possible Holliday junction resolvase [Cytophaga hutchinsonii ATCC
33406]
Length = 152
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 19/142 (13%)
Query: 19 IASIDLGTKRIGLAISDPGRRFA------HPRPFLVRKKVTQTALELLSFITTENIAAFI 72
I + D GTKRIG+A +DP + A HP+ +V L ++ TE + AF+
Sbjct: 4 ILAFDFGTKRIGIASTDPMQIIANALDTVHPKDVVVY---------LKKYLNTEPVEAFV 54
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+GLP + E + +AF+ N+I + P DER T+ A ++ VS+K
Sbjct: 55 VGLPRTLQNEESSNAANVKAFI-NLIKKNFPQTPIYGVDERFTSSMAFDTMLAGGVSKKG 113
Query: 132 RIQK--VDSIAAALILQEVLDR 151
R K +D I+A +ILQ +++
Sbjct: 114 RRDKATIDKISATIILQSFMEQ 135
>gi|254881557|ref|ZP_05254267.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|254834350|gb|EET14659.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
Length = 139
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A++D + A+ L Q +L ++ E + I+G P
Sbjct: 4 ILAIDYGKKRTGVAVTDVLQIIANG---LTTVPTHQLLDFILKYVEKEPVERIIVGHPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN E + + FV+ + + +P F DER T+V A Q ++D + +K R K V
Sbjct: 61 MNNQESENMRNIVPFVNQLRKKLPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNKALV 120
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D I+A +ILQ S+LES K
Sbjct: 121 DEISATIILQ------SYLESKK 137
>gi|39938790|ref|NP_950556.1| Hollyday junction resolvase [Onion yellows phytoplasma OY-M]
gi|62900989|sp|Q6YQR9|RUVX_ONYPE RecName: Full=Putative Holliday junction resolvase
gi|39721899|dbj|BAD04389.1| Hollyday junction resolvase [Onion yellows phytoplasma OY-M]
Length = 151
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIG 74
N +DLG K +G+A+S G + + F K + L I I ++G
Sbjct: 6 NNASLGLDLGEKTLGIALSQTGIIAQNLKTIFFATHKYDRLIAPLQEIIFQYQIKTIVLG 65
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +MN G + + F + ++ V + WDERL+TV A Q+L N + K +Q
Sbjct: 66 YPKHMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGKILQ 125
Query: 135 KVDSIAAALILQEVLDRISF 154
D IAA +ILQ LD I
Sbjct: 126 MKDEIAATIILQNYLDYIKL 145
>gi|333029958|ref|ZP_08458019.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011]
gi|332740555|gb|EGJ71037.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011]
Length = 139
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 13/138 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT----TENIAAFIIG 74
I +ID G KR G+A++DP + A+ T +L+ F+T E++ IIG
Sbjct: 4 ILAIDYGRKRTGIAVTDPMQIIANGL-------TTVRTHDLMDFLTDYTQKESVEKIIIG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP M+ + + FV N + +P + DER T+V AQ+ +I+ + +K R
Sbjct: 57 LPKQMDNTPSESMKYIEPFVRNFQKKFPDMPLEYVDERFTSVIAQRTIIEAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLD 150
K VD ++A +ILQ L+
Sbjct: 117 KALVDEVSATIILQTYLE 134
>gi|294643795|ref|ZP_06721593.1| RNAse YqgF [Bacteroides ovatus SD CC 2a]
gi|294808455|ref|ZP_06767208.1| RNAse YqgF [Bacteroides xylanisolvens SD CC 1b]
gi|292640884|gb|EFF59104.1| RNAse YqgF [Bacteroides ovatus SD CC 2a]
gi|294444383|gb|EFG13097.1| RNAse YqgF [Bacteroides xylanisolvens SD CC 1b]
Length = 141
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENI 68
+ P I +ID G KR G+A+SD + A+ T ELL+FI E +
Sbjct: 1 MYPMSRIVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGEYMAKEPV 53
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
IIGLP MN + + FV ++ R +P + DER T+V A + +++ +
Sbjct: 54 ERIIIGLPKQMNNEVSENMKNIEPFVRSLNKRYPDLPVEYVDERFTSVLAHRTMLEAGLK 113
Query: 129 RKKRIQK--VDSIAAALILQEVLDRISF 154
+K R K VD I+A +ILQ L+ F
Sbjct: 114 KKDRQNKALVDEISATIILQTYLESKRF 141
>gi|29840356|ref|NP_829462.1| Holliday junction resolvase-like protein [Chlamydophila caviae
GPIC]
gi|33301619|sp|Q822T1|RUVX_CHLCV RecName: Full=Putative Holliday junction resolvase
gi|29834705|gb|AAP05340.1| conserved hypothetical protein TIGR00250 [Chlamydophila caviae
GPIC]
Length = 163
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID G +RIGLA + + P + V TA L + I +++ ++G P+ M
Sbjct: 14 GIDYGQRRIGLAYAASPLFISLPIGCIEAGNTVEATAKILFNIIQERSVSCVVLGNPIPM 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDS 138
+ + + ++I V + WDERL++ A+++L D +SRKKR K D+
Sbjct: 74 QKGQKSALQEEITKLSSLIQESCGVEVILWDERLSSAQAERMLKGDCGLSRKKRKGKTDT 133
Query: 139 IAAALILQEVLDRISFLESS 158
IAA LIL SFLESS
Sbjct: 134 IAATLIL------TSFLESS 147
>gi|150006542|ref|YP_001301286.1| Holliday junction resolvase-like protein [Bacteroides vulgatus ATCC
8482]
gi|294778839|ref|ZP_06744256.1| RNAse YqgF [Bacteroides vulgatus PC510]
gi|319642941|ref|ZP_07997577.1| Holliday junction resolvase [Bacteroides sp. 3_1_40A]
gi|167012694|sp|A6L7K0|RUVX_BACV8 RecName: Full=Putative Holliday junction resolvase
gi|149934966|gb|ABR41664.1| putative endonuclease [Bacteroides vulgatus ATCC 8482]
gi|294447292|gb|EFG15875.1| RNAse YqgF [Bacteroides vulgatus PC510]
gi|317385489|gb|EFV66432.1| Holliday junction resolvase [Bacteroides sp. 3_1_40A]
Length = 139
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A++D + A+ L Q +L ++ E + I+G P
Sbjct: 4 ILAIDYGKKRTGVAVTDVLQIIANG---LTTVPTHQLLDFILKYVEKEPVERIIVGHPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN E + + FV+ + + +P F DER T+V A Q ++D + +K R K V
Sbjct: 61 MNNQESENMRNIVPFVNQLRKKIPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNKALV 120
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D I+A +ILQ S+LES K
Sbjct: 121 DEISATIILQ------SYLESKK 137
>gi|304382926|ref|ZP_07365408.1| Holliday junction resolvase [Prevotella marshii DSM 16973]
gi|304335951|gb|EFM02199.1| Holliday junction resolvase [Prevotella marshii DSM 16973]
Length = 140
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74
I SID G KR GLA++DP + + T EL F+ T E + +IG
Sbjct: 6 ILSIDYGKKRTGLAVTDPLQ-------MICGGLATVPTSELFKFLQTYMEKEPVERIVIG 58
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NG + + FV+ +VP F+DER T++ A + ++D + +K R
Sbjct: 59 EPKQPNGMPSENMARVQQFVNRWRKAVPHVPIEFYDERFTSLLAHKAMLDGGLKKKARRD 118
Query: 135 K--VDSIAAALILQEVLDRI 152
K VD I+A +ILQ L+ I
Sbjct: 119 KALVDEISATIILQSYLESI 138
>gi|224023748|ref|ZP_03642114.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM
18228]
gi|224016970|gb|EEF74982.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM
18228]
Length = 142
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 5/134 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A++DP + A+ L Q LL ++T E++ I+G P
Sbjct: 4 IIAIDYGRKRTGIAVTDPMQIIANG---LTTVPTHQLMDFLLKYVTQESVERIIVGHPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN + + + F++ + + +P DER T+V A Q ++ + +K R K V
Sbjct: 61 MNNEDSENMKNIIPFINQLKKKLPKIPVELVDERFTSVLAHQAMLAGGLKKKDRQNKALV 120
Query: 137 DSIAAALILQEVLD 150
D I+A +ILQ L+
Sbjct: 121 DEISATIILQSYLE 134
>gi|206900507|ref|YP_002250744.1| hypothetical protein DICTH_0881 [Dictyoglomus thermophilum H-6-12]
gi|226725513|sp|B5YDY6|RUVX_DICT6 RecName: Full=Putative Holliday junction resolvase
gi|206739610|gb|ACI18668.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
Length = 139
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +ID G K +GLAISDP R A K L + + ++G P++
Sbjct: 3 VLAIDWGEKYVGLAISDPLRIIAQGLDVWEIKGEEDFVSRLKRLVEDYQVKEIVLGYPIS 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ G E R R + +I+ + +P F DERLTT+ A+++L++ ++ RKKR +
Sbjct: 63 LRGHENERTQKVR-HIAELIESVIGIPVKFVDERLTTMEAEKVLLEGDIKRKKRKLLKNK 121
Query: 139 IAAALILQEVLDRISF 154
AA +ILQ+ LD S
Sbjct: 122 QAAVIILQKYLDSSSL 137
>gi|318057083|ref|ZP_07975806.1| Holliday junction resolvase-like protein [Streptomyces sp.
SA3_actG]
gi|318077855|ref|ZP_07985187.1| Holliday junction resolvase-like protein [Streptomyces sp.
SA3_actF]
Length = 154
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 61/130 (46%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DP A P + + V + + + ++GLP ++
Sbjct: 8 AIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVGLPRSLR 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG RAF + VP DER+TTV+A Q L V+ KK +D A
Sbjct: 68 GGEGSAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRSVIDQAA 127
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 128 AVIILQTALE 137
>gi|260642386|ref|ZP_05415682.2| putative Holliday junction resolvase [Bacteroides finegoldii DSM
17565]
gi|260622253|gb|EEX45124.1| putative Holliday junction resolvase [Bacteroides finegoldii DSM
17565]
Length = 141
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 13/146 (8%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAA 70
P I +ID G KR G+A+SD + A+ T ELL+FI E +
Sbjct: 3 PMSRIVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGDYIAKEPVER 55
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
IIGLP MN + + FV ++ R +P + DER T+V A + +++ + +K
Sbjct: 56 IIIGLPKQMNNEVSENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKK 115
Query: 131 KRIQK--VDSIAAALILQEVLDRISF 154
R K VD I+A +ILQ L+ F
Sbjct: 116 DRQNKALVDEISATIILQTYLESKRF 141
>gi|297562015|ref|YP_003680989.1| Holliday junction resolvase YqgF [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296846463|gb|ADH68483.1| Holliday junction resolvase YqgF [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 161
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D G RIG+A SDP A P + R K + LL + ++G P +++
Sbjct: 8 AVDPGNARIGVAASDPSGMLASPVETIRRGKGDTQRIALL--VLERQAREVVVGYPASLS 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRK------KRI 133
G EGP S R F + VP DERLTTV+AQ Q+L + + K R
Sbjct: 66 GEEGPAARSARDFARTLAALLHPVPVRLVDERLTTVTAQSQLLSGASFAAKGAKGGRARR 125
Query: 134 QKVDSIAAALILQEVLDR 151
+D AA ++LQ LD+
Sbjct: 126 SVIDQAAATVLLQSALDQ 143
>gi|282858812|ref|ZP_06267957.1| RNAse YqgF [Prevotella bivia JCVIHMP010]
gi|282588381|gb|EFB93541.1| RNAse YqgF [Prevotella bivia JCVIHMP010]
Length = 139
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A++DP R A+ L ++ L+++I +E + +IG P+
Sbjct: 4 ILAIDYGKKRTGIAVTDPLRIIANG---LATVPTSELYDYLVAYIRSEAVDKIVIGKPIQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
NG F + + +P F+DER T+V A Q +I V +K R +
Sbjct: 61 ANGQPSENFVRVEQFANRWKKVQPTIPIEFYDERFTSVIAHQAMIVGGVKKKTRREDKGL 120
Query: 136 VDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 121 VDEISATIILQDFM 134
>gi|254445960|ref|ZP_05059436.1| conserved hypothetical protein TIGR00250 [Verrucomicrobiae
bacterium DG1235]
gi|198260268|gb|EDY84576.1| conserved hypothetical protein TIGR00250 [Verrucomicrobiae
bacterium DG1235]
Length = 149
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G +R+G+A D G A P +V+ + L+ F+ G P NM
Sbjct: 5 GVDYGERRVGVAFGDDIG--VATPLQAIVKATEEERIQALVDLARERRATDFVFGYPYNM 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NGS G + AF+ ++ + + +P DERLT+V A + +R K+DS+
Sbjct: 63 NGSVGFKAKEVDAFIDKLL-KAIDLPVHRLDERLTSVEASKAFPKKRDDELRRSGKIDSV 121
Query: 140 AAALILQEVLDR 151
AA+LILQ+ L++
Sbjct: 122 AASLILQDYLNQ 133
>gi|186680854|ref|YP_001864050.1| Holliday junction resolvase-like protein [Nostoc punctiforme PCC
73102]
gi|186463306|gb|ACC79107.1| Holliday junction resolvase YqgF [Nostoc punctiforme PCC 73102]
Length = 158
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
KP +D G KRIG+A D A + R Q ++ + + ++
Sbjct: 8 KPFISALGLDFGRKRIGVAGCDRTGLIATGITTIERTSFEQDVEQIRQIVNEREVQILVM 67
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +M+GS G + + F + + + +P + DERLT+ A+Q+LI N S +
Sbjct: 68 GLPYSMDGSIGFQARQVQKFTTRL-SKALKLPVEYVDERLTSFQAEQLLIAENRSPSRHK 126
Query: 134 QKVDSIAAALILQEVLD 150
+D AAALILQ+ LD
Sbjct: 127 GLIDRKAAALILQQWLD 143
>gi|152002556|dbj|BAF73580.1| predicted endonuclease [Onion yellows phytoplasma OY-W]
Length = 151
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIG 74
N +DLG K +G+A+S G + F K + L I+ I ++G
Sbjct: 6 NNASLGLDLGEKTLGIALSQTGIIAQKLKTIFFATHKYDRLIAPLQEIISQYQIKTIVLG 65
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +MN G + + F + ++ V + WDERL+TV A Q+L N + + +Q
Sbjct: 66 YPKHMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGQILQ 125
Query: 135 KVDSIAAALILQEVLDRISF 154
D IAA +ILQ LD I
Sbjct: 126 MKDEIAATIILQNYLDYIKL 145
>gi|300088456|ref|YP_003758978.1| Holliday junction resolvase YqgF [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299528189|gb|ADJ26657.1| Holliday junction resolvase YqgF [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 143
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 3/134 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D+G K +G+A+SDP A P L R A ++ + + A +IGLP
Sbjct: 5 VIGLDVGDKWVGVALSDPMGVIARPLTILERCDEITDAEAVVRLVGEHDAARVVIGLPRL 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI--QKV 136
+NG G + + F + VP +F DER +T SA+ I+ RK ++
Sbjct: 65 LNGVVGTQAERVQYFARRLAS-LTDVPVIFQDERFSTASAKDIMKSNRRYRKGFYSRERD 123
Query: 137 DSIAAALILQEVLD 150
D++AAA+ILQ+ LD
Sbjct: 124 DAVAAAVILQDWLD 137
>gi|325298806|ref|YP_004258723.1| Holliday junction resolvase [Bacteroides salanitronis DSM 18170]
gi|324318359|gb|ADY36250.1| Holliday junction resolvase [Bacteroides salanitronis DSM 18170]
Length = 139
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 11/144 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A++DP + A L Q LL ++ E + IIG P
Sbjct: 4 ILAIDYGKKRTGIAVTDPMQVIASG---LTTVPTHQLMDFLLGYVRQEAVERIIIGHPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN + + F++ + + +P +DER T+V A Q ++ + +K R K V
Sbjct: 61 MNNEDSENMKRIVPFMNQLKKKLPDMPVELYDERFTSVLAHQAMLAGGLKKKDRQNKALV 120
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
D I+A +ILQ S+LE+ +G
Sbjct: 121 DEISATIILQ------SYLEAKRG 138
>gi|73748006|ref|YP_307245.1| hypothetical protein cbdb_A67 [Dehalococcoides sp. CBDB1]
gi|147668700|ref|YP_001213518.1| Holliday junction resolvase YqgF [Dehalococcoides sp. BAV1]
gi|289432003|ref|YP_003461876.1| Holliday junction resolvase YqgF [Dehalococcoides sp. GT]
gi|146325568|sp|Q3ZWC2|RUVX_DEHSC RecName: Full=Putative Holliday junction resolvase
gi|73659722|emb|CAI82329.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1]
gi|146269648|gb|ABQ16640.1| Holliday junction resolvase YqgF [Dehalococcoides sp. BAV1]
gi|288945723|gb|ADC73420.1| Holliday junction resolvase YqgF [Dehalococcoides sp. GT]
Length = 133
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 3/130 (2%)
Query: 24 LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
+G K IG A+SDP R A P L R T+T + S + T IIGLP+++NG+
Sbjct: 1 MGDKWIGAALSDPLRILASPLVILRRDDDTKTLENIESLVKTHQPDLLIIGLPISLNGTI 60
Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
GP+ ++F ++ R + + ++ DER +T A++ + D + + + D+ AAA+
Sbjct: 61 GPQAEKVKSFSE-LLSRHLNIEIIYRDERFSTDEARRKMNDS--GKNNKTVRDDAAAAAV 117
Query: 144 ILQEVLDRIS 153
ILQ+ LD +
Sbjct: 118 ILQDYLDETN 127
>gi|294056021|ref|YP_003549679.1| Holliday junction resolvase YqgF [Coraliomargarita akajimensis DSM
45221]
gi|293615354|gb|ADE55509.1| Holliday junction resolvase YqgF [Coraliomargarita akajimensis DSM
45221]
Length = 153
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID G KRIGLA +D G P V KK +E + I + ++G PLNM
Sbjct: 5 GIDWGEKRIGLAFADEVGIALPLPAAVAVSKKERMRHIEQM--IQERRVRELVVGYPLNM 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + AF+ + +++ +P DERL++ S +Q L ++ ++DS
Sbjct: 63 DGSVGFKAKEVDAFIEEL-EKRFRLPVSRIDERLSSHSVEQGLRGQKKKPDRKSGEIDSR 121
Query: 140 AAALILQEVLD 150
AAALILQ+ ++
Sbjct: 122 AAALILQDFIE 132
>gi|254423308|ref|ZP_05037026.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. PCC
7335]
gi|196190797|gb|EDX85761.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. PCC
7335]
Length = 144
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLG KRIG+A D A L + + L + I ++ ++GLP M+
Sbjct: 6 GLDLGAKRIGVAGCDRTGLIATGLTTLYKTSFESIIVPLETLIQARSVEVLVVGLPYTMD 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G G + + F H + + + +P F DERLT+ A+Q+L+ S + +D A
Sbjct: 66 GQIGFQAKKIQKFAHRL-SKVLGLPVEFVDERLTSFQAEQMLLAERRSLTNCKELIDRKA 124
Query: 141 AALILQEVLD 150
AA+ILQ+ LD
Sbjct: 125 AAIILQQWLD 134
>gi|304373321|ref|YP_003856530.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1]
gi|304309512|gb|ADM21992.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1]
gi|330723802|gb|AEC46172.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis MCLD]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELL-SFITTENIAAFIIGLP 76
I ++DLG+K G AISD R + P F ++ + +E L + I +IG P
Sbjct: 4 IIALDLGSKSCGFAISDALRITSQPLENFQFKEHKLELVIEKLKDYFEKYEIELVLIGYP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+M ++ FV N+ +P DER TT A I+I+ +SR+KR +
Sbjct: 64 LSMQLNQTKSSKRVDYFV-NLFKTHFDIPIKLVDERQTTKKAHSIMIEQGLSRQKRKKNK 122
Query: 137 DSIAAALILQEVLDR 151
D +AA LIL + L++
Sbjct: 123 DKLAAQLILDDYLNQ 137
>gi|315503217|ref|YP_004082104.1| holliday junction resolvase yqgf [Micromonospora sp. L5]
gi|315409836|gb|ADU07953.1| Holliday junction resolvase YqgF [Micromonospora sp. L5]
Length = 153
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFIIG 74
+D+G R+G+A DP A P L R V EL+ ++G
Sbjct: 11 GVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLAAEHEAVGIVVG 70
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP+N+ G GP + A+ + D +P DER++TV A + L + V K++
Sbjct: 71 LPVNLAGKHGPAALNVSAYASRLADVMRPIPVTLTDERMSTVVASRRLAERGVRGKRQRA 130
Query: 135 KVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 131 VVDQAAAVEILQSWLD 146
>gi|302866802|ref|YP_003835439.1| Holliday junction resolvase YqgF [Micromonospora aurantiaca ATCC
27029]
gi|302569661|gb|ADL45863.1| Holliday junction resolvase YqgF [Micromonospora aurantiaca ATCC
27029]
Length = 153
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFIIG 74
+D+G R+G+A DP A P L R V EL+ ++G
Sbjct: 11 GVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLAAEHEAVGIVVG 70
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP+N+ G GP + A+ + D +P DER++TV A + L + V K++
Sbjct: 71 LPVNLAGKHGPAALNVSAYASRLADVMRPIPVTLTDERMSTVVASRRLAERGVRGKRQRA 130
Query: 135 KVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 131 VVDQAAAVEILQSWLD 146
>gi|237716075|ref|ZP_04546556.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262407687|ref|ZP_06084235.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|298480835|ref|ZP_06999030.1| Holliday junction resolvase [Bacteroides sp. D22]
gi|229443722|gb|EEO49513.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262354495|gb|EEZ03587.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|298272858|gb|EFI14424.1| Holliday junction resolvase [Bacteroides sp. D22]
Length = 138
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
I +ID G KR G+A+SD + A+ T ELL+FI E + IIG
Sbjct: 4 IVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGEYMAKEPVERIIIG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 57 LPKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLDRISF 154
K VD I+A +ILQ L+ F
Sbjct: 117 KALVDEISATIILQTYLESKRF 138
>gi|198275232|ref|ZP_03207763.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135]
gi|198271815|gb|EDY96085.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135]
Length = 138
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A++DP + A+ L + LL ++ E + ++G P
Sbjct: 4 ILAIDYGRKRTGIAVTDPMQIIANG---LTTVPTHELMDFLLKYVAQEKVERIVVGHPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN + + + FV + + +P DER T+V A Q ++D + +K R K V
Sbjct: 61 MNNEDSENMKYIKPFVAQLKKKLPDMPVELVDERFTSVLAHQAMLDGGLKKKARQDKALV 120
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D I+A +ILQ S+LES +
Sbjct: 121 DEISATIILQ------SYLESRR 137
>gi|298384714|ref|ZP_06994274.1| Holliday junction resolvase [Bacteroides sp. 1_1_14]
gi|298262993|gb|EFI05857.1| Holliday junction resolvase [Bacteroides sp. 1_1_14]
Length = 138
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
I +ID G KR G+A+SD + A+ T ELL+FI E + IIG
Sbjct: 4 IVAIDYGRKRTGIAVSDTLQLIANGL-------TTVPTHELLNFIGEYVAKEPVERIIIG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 57 LPKQMNNEASENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLDRISF 154
K VD I+A +ILQ L+ F
Sbjct: 117 KALVDEISATIILQTYLESKRF 138
>gi|239939939|ref|ZP_04691876.1| hypothetical protein SrosN15_02984 [Streptomyces roseosporus NRRL
15998]
gi|239986423|ref|ZP_04707087.1| hypothetical protein SrosN1_03861 [Streptomyces roseosporus NRRL
11379]
gi|291443370|ref|ZP_06582760.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291346317|gb|EFE73221.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 157
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 58/130 (44%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A DP A P + + V L + I+GLP ++
Sbjct: 11 AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVEEYEPIEVILGLPRSLG 70
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R F VP DER+TTV+A Q + V KK +D A
Sbjct: 71 GGEGPAAAKVRDFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRSVIDQAA 130
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 131 AVVILQNALE 140
>gi|225426409|ref|XP_002269986.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 169
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLP 76
+ +D+G K +GLA+SD + A P L+RKK + A + S I+ ++A FI+G P
Sbjct: 24 LLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATDFQSLISDLSLAGFIVGYP 83
Query: 77 LNMNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
N S P + + F+ ++ + V + +WDE T+ + + +L +N+ +
Sbjct: 84 FNRQRSS-PTAVNVKVFIDDLCKTGKLEGVRYTYWDECFTSKNVELLLKPLNLHPVQSKT 142
Query: 135 KVDSIAAALILQEVLDRIS 153
+D AA ILQ LD ++
Sbjct: 143 ILDKFAAVGILQGYLDHVN 161
>gi|324999313|ref|ZP_08120425.1| Holliday junction resolvase-like protein [Pseudonocardia sp. P1]
Length = 142
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+D+G R+G+A+ DP A P + R + ++ + E ++ ++GLP N+
Sbjct: 10 GVDVGAVRVGVAMCDPDGILATPVETVPRDAEHGADVRRIAELVAEHDVVGVVLGLPRNL 69
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G +GP + R F + + + VP DER+TTV A + L V +K+ VD
Sbjct: 70 RGEDGPAARAAREFA-DALQAGLDVPVELTDERMTTVVAARQLSGRGVKGRKQRSVVDQA 128
Query: 140 AAALILQEVLDR 151
AA ILQ LD+
Sbjct: 129 AAVQILQGWLDQ 140
>gi|237722140|ref|ZP_04552621.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|260170793|ref|ZP_05757205.1| Holliday junction resolvase-like protein [Bacteroides sp. D2]
gi|299149163|ref|ZP_07042224.1| putative Holliday junction resolvase [Bacteroides sp. 3_1_23]
gi|315919127|ref|ZP_07915367.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|229447950|gb|EEO53741.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|298512830|gb|EFI36718.1| putative Holliday junction resolvase [Bacteroides sp. 3_1_23]
gi|313693002|gb|EFS29837.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 138
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
I +ID G KR G+A+SD + A+ T ELL+FI E + IIG
Sbjct: 4 IVAIDYGRKRTGIAVSDTMQLIANGL-------TTVPTHELLNFIGEYIAKEPVERIIIG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 57 LPKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLDRISF 154
K VD I+A +ILQ L+ F
Sbjct: 117 KALVDEISATIILQTYLESKRF 138
>gi|270293966|ref|ZP_06200168.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270275433|gb|EFA21293.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 141
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 7/141 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A+SD + A+ + ++ Q LL ++ E + ++G P
Sbjct: 4 IIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLQF---LLDYVAKEPVERILVGFPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN + + FV ++ + +P + DER T+V A + +++ + +K R K V
Sbjct: 61 MNNEASENMKNIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNKALV 120
Query: 137 DSIAAALILQEVLD--RISFL 155
D I+A +ILQ L+ R SFL
Sbjct: 121 DEISATIILQTYLENKRFSFL 141
>gi|29345829|ref|NP_809332.1| Holliday junction resolvase-like protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|253567815|ref|ZP_04845226.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|32130022|sp|Q8AAP5|RUVX_BACTN RecName: Full=Putative Holliday junction resolvase
gi|29337722|gb|AAO75526.1| putative endonuclease [Bacteroides thetaiotaomicron VPI-5482]
gi|251841888|gb|EES69968.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 138
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
I +ID G KR G+A+SD + A+ T ELL+FI E + IIG
Sbjct: 4 IVAIDYGRKRTGIAVSDTLQLIAN-------GLTTVPTHELLNFIGGYVAKEPVERIIIG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 57 LPKQMNNEASENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLDRISF 154
K VD I+A +ILQ L+ F
Sbjct: 117 KALVDEISATIILQTYLESKRF 138
>gi|160883801|ref|ZP_02064804.1| hypothetical protein BACOVA_01773 [Bacteroides ovatus ATCC 8483]
gi|156110886|gb|EDO12631.1| hypothetical protein BACOVA_01773 [Bacteroides ovatus ATCC 8483]
Length = 138
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
I +ID G KR G+A+SD + A+ T ELL+FI E + IIG
Sbjct: 4 IVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGEYIAKEPVERIIIG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 57 LPKQMNNELSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLDRISF 154
K VD I+A +ILQ L+ F
Sbjct: 117 KALVDEISATIILQTYLESKRF 138
>gi|260494134|ref|ZP_05814265.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_33]
gi|260198280|gb|EEW95796.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_33]
Length = 147
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 10/145 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79
++D+G RIG+A SD A P + RKKV +++ ++ I EN I+ G+P ++
Sbjct: 6 ALDIGDVRIGVAKSDIMGIIASPLETINRKKVK--SVKRIAEICKENDTNLIVVGIPKSL 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136
+G E + R ++ + + + DER +TV A IL ++N + K+++ V
Sbjct: 64 DGEEKRQAEKVREYIKKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--V 121
Query: 137 DSIAAALILQEVLD--RISFLESSK 159
D +AA++ILQ LD ++ FLE K
Sbjct: 122 DKVAASIILQTYLDMKKLKFLEEGK 146
>gi|328955591|ref|YP_004372924.1| Holliday junction resolvase YqgF [Coriobacterium glomerans PW2]
gi|328455915|gb|AEB07109.1| Holliday junction resolvase YqgF [Coriobacterium glomerans PW2]
Length = 140
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G R G+A+SD R A P L +V A + + G PL +
Sbjct: 5 AIDIGEVRCGIAVSDATGRVALPVKVLPAIEVVSLARSFRDVLAEYEPEMLVCGSPLTLA 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G GP+ RA I +P F DER+++ A++IL + + ++ K+D IA
Sbjct: 65 GELGPQAERIRAEAEA-IGSAADLPVAFVDERMSSREAKRILRERGCTEREMRGKLDMIA 123
Query: 141 AALILQEVLDR 151
A+L LQ LDR
Sbjct: 124 ASLFLQTWLDR 134
>gi|85711782|ref|ZP_01042838.1| Holliday junction resolvase-like protein [Idiomarina baltica OS145]
gi|85694397|gb|EAQ32339.1| Holliday junction resolvase-like protein [Idiomarina baltica OS145]
Length = 135
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ------TALELLSFITTENIAAFI 72
+ D GTK IG+A+ G+ L K T +LL E + +
Sbjct: 3 VVGFDFGTKSIGVAV---GQSITGTASILKALKAQDGIPNWSTVEQLLKEWQPERV---V 56
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+G+E P + F N I + VP VF DERLT+ +A++ L + + R
Sbjct: 57 VGLPLNMDGTEQPLTQRAKKF-GNRIHGRFNVPVVFQDERLTSTAAREALFERDGYRGLE 115
Query: 133 IQKVDSIAAALILQEVL 149
KVDS AA LI+++ L
Sbjct: 116 KGKVDSAAALLIVEDYL 132
>gi|313115011|ref|ZP_07800503.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622665|gb|EFQ06128.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 191
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAH---PRPFL-VRKKVTQTALELLSFITTENIAAFIIG 74
I ++D G R GLA D P+ L R KV E+ I E I +IG
Sbjct: 51 ILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIGAELI---VIG 107
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+EG R +R ++ +P WDER TT +A IL + KR +
Sbjct: 108 LPLNMDGTEGERAIKSRKLAKT-VEIWSGLPVRMWDERQTTCAAADILDESGTFGTKRKE 166
Query: 135 KVDSIAAALILQEVL 149
+DS++A +IL + L
Sbjct: 167 ILDSVSATVILDDYL 181
>gi|294673343|ref|YP_003573959.1| hypothetical protein PRU_0590 [Prevotella ruminicola 23]
gi|294472451|gb|ADE81840.1| conserved hypothetical protein TIGR00250 [Prevotella ruminicola 23]
Length = 137
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I SID G KR GLA++DP + A L ++ L ++I E + +IG P
Sbjct: 4 ILSIDYGKKRTGLAVTDPLQIIAGG---LATVATSELFDFLKAYIAREQVEMIVIGEPRQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
NG + + FV+ VP ++DER T+V A Q ++D + +K R K V
Sbjct: 61 PNGEPSENLARVQQFVNRWRKAVPEVPIQYYDERFTSVLAHQAMLDGGLKKKARQNKGLV 120
Query: 137 DSIAAALILQEVL 149
D I+A +IL++ +
Sbjct: 121 DEISATIILEDFM 133
>gi|326780492|ref|ZP_08239757.1| Holliday junction resolvase YqgF [Streptomyces cf. griseus
XylebKG-1]
gi|326660825|gb|EGE45671.1| Holliday junction resolvase YqgF [Streptomyces cf. griseus
XylebKG-1]
Length = 154
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A DP A P + + V L + ++GLP ++
Sbjct: 8 AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPIEVVLGLPRSLG 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R F VP DER+TTV+A Q + V KK +D A
Sbjct: 68 GGEGPAAAKVREFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRSVIDQAA 127
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 128 AVVILQNALE 137
>gi|238897811|ref|YP_002923490.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465568|gb|ACQ67342.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 145
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GTK IG+AI A P K T +++ ++ ++G PLN
Sbjct: 6 IIAFDFGTKSIGVAIGQNITETARPLTACKSKNGTPDWIKIERLLSEWYPDLVVVGFPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E P S R F H + R+ + VF DERL+T A+ L D + VD+
Sbjct: 66 MDGTEQPITESARQFGHALY-RRFGIKVVFHDERLSTAEARAYLFDKGGYQALNKSSVDA 124
Query: 139 IAAALILQ 146
+A +IL+
Sbjct: 125 TSAVIILE 132
>gi|182439828|ref|YP_001827547.1| hypothetical protein SGR_6035 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178468344|dbj|BAG22864.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 161
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A DP A P + + V L + ++GLP ++
Sbjct: 15 AVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPIEVVLGLPRSLG 74
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R F VP DER+TTV+A Q + V KK +D A
Sbjct: 75 GGEGPAAAKVREFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRSVIDQAA 134
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 135 AVVILQNALE 144
>gi|152994576|ref|YP_001339411.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1]
gi|150835500|gb|ABR69476.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1]
Length = 156
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 2 SILLIEDLVKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
SI L + KPN + + D GT RIG+AI A P L K+ E+
Sbjct: 4 SISTGTSLDDNQKPNTVRSVLGFDFGTTRIGVAIGQSITGTAQPLDPLKAKEGIPNWDEI 63
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ AF++GLPL+M+GSE R F + R +P+ DERL++ A+
Sbjct: 64 TRIVEEWKPDAFVVGLPLDMDGSENEMCQRARKFAKRLHGR-FNLPYHMMDERLSSYEAK 122
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQ 146
+I +R + VD +AA +IL+
Sbjct: 123 GQVIARGGNRNFKENSVDGLAAQMILE 149
>gi|163782351|ref|ZP_02177349.1| hypothetical protein HG1285_06175 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882384|gb|EDP75890.1| hypothetical protein HG1285_06175 [Hydrogenivirga sp. 128-5-R1-1]
Length = 132
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID GTKR+GLAI D A P+ L +E + ++ + ++GLPL
Sbjct: 3 IIAIDFGTKRVGLAIGDTDLGIAVPKGVLRNDANLLDRIE--DIVRSKGVKKVVVGLPLT 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G EG R R F + R V WDER +T+ A+ L D+ R++ + +D+
Sbjct: 61 PSGREGERAKLVREFAEALRKRLKDVDIELWDERYSTMEAESRLRDLPPRRRREV--LDA 118
Query: 139 IAAALILQEVL 149
I+A +IL+E L
Sbjct: 119 ISAQIILEEYL 129
>gi|58698540|ref|ZP_00373442.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225629964|ref|YP_002726755.1| putative holliday junction resolvase [Wolbachia sp. wRi]
gi|254767533|sp|C0R5C2|RUVX_WOLWR RecName: Full=Putative Holliday junction resolvase
gi|58534956|gb|EAL59053.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225591945|gb|ACN94964.1| putative holliday junction resolvase [Wolbachia sp. wRi]
Length = 155
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
++ +KS+ ++ I +D+G K+IG+A SD + A RK +++ L L I E
Sbjct: 7 DEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKD-LGYLHRIFKE 65
Query: 67 NIA-AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL--I 123
N A + +IG+PLN++ E + F + +I +K V DE L+T A L
Sbjct: 66 NEAGSMVIGIPLNIDEQETKWCKTIIQFANKII-KKYKVNTYLQDESLSTSIATHTLKIT 124
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
+++++ K+I D I+A +ILQ LD+I+ ++
Sbjct: 125 GISITKSKKID--DKISACIILQRTLDKINTIK 155
>gi|237744282|ref|ZP_04574763.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
7_1]
gi|229431511|gb|EEO41723.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
7_1]
Length = 147
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 10/145 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79
++D+G RIG+A SD A P + RKKV +++ ++ I EN I+ G+P ++
Sbjct: 6 ALDIGDVRIGVARSDIMGIIASPLETINRKKVK--SVKRIAEICKENDTNLIVVGIPKSL 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136
+G E + R ++ + + + DER +TV A IL ++N + K+++ V
Sbjct: 64 DGEEKRQAEKVREYIEKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--V 121
Query: 137 DSIAAALILQEVLD--RISFLESSK 159
D +AA++ILQ LD ++ FLE K
Sbjct: 122 DKVAASIILQTYLDMKKLKFLEEGK 146
>gi|89091932|ref|ZP_01164887.1| Holliday junction resolvase-like protein [Oceanospirillum sp.
MED92]
gi|89083667|gb|EAR62884.1| Holliday junction resolvase-like protein [Oceanospirillum sp.
MED92]
Length = 158
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
NQ +A D GT+RIG+A A P L+ K E+ I+ A ++G+
Sbjct: 6 NQALA-FDFGTRRIGVASGQSVTGTASPLTPLIAKDGIPNWDEISKLISEWQPDALVVGI 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLN +G+ H R F N + + P DERL+T A++I S R +
Sbjct: 65 PLNADGTISDMAHRARKFA-NRLHERYKTPCFLMDERLSTAEAKEIHFASGGSDNFREES 123
Query: 136 VDSIAAALILQEVLD 150
VD IAA LIL+ +
Sbjct: 124 VDGIAAQLILESWFN 138
>gi|297624148|ref|YP_003705582.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093]
gi|297165328|gb|ADI15039.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093]
Length = 154
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + ++D+G +RIG+A + G FA R + R+ + + + E A ++GL
Sbjct: 2 SEVVLALDVGERRIGVARGEVGSPFAFGRGVIARRSLRADVAAVRALADAEGAARVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + G + + RAF + + + VF DER T+ A Q L+ + R +R +K
Sbjct: 62 PRRLRGGDSAQTSRVRAFAAQL--QAAGLEVVFEDERFTSRIATQSLVKSGLKRGQRQEK 119
Query: 136 --VDSIAAALILQEVL 149
VD AA LIL+ L
Sbjct: 120 GRVDEGAAVLILETYL 135
>gi|282877696|ref|ZP_06286511.1| RNAse YqgF [Prevotella buccalis ATCC 35310]
gi|281300268|gb|EFA92622.1| RNAse YqgF [Prevotella buccalis ATCC 35310]
Length = 138
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 13/144 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
I SID G KR G+A++DP + A+ + T T + L ++ E + +IG P+
Sbjct: 3 ILSIDYGKKRTGIAVTDPLQIIANGLATVS----TSTLFDYLKDYVAREEVERIVIGKPM 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
NG + FV+ +P ++DER T+V A + ++ + +K R K
Sbjct: 59 QTNGKPSENMARVEQFVNRWRKAMPQIPIEYYDERFTSVLAHKAMLASGIGKKARQNKAL 118
Query: 136 VDSIAAALILQEVLDRISFLESSK 159
VD I+A +ILQ S++ES +
Sbjct: 119 VDEISATIILQ------SYMESKR 136
>gi|256027954|ref|ZP_05441788.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
D11]
gi|289765899|ref|ZP_06525277.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D11]
gi|289717454|gb|EFD81466.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D11]
Length = 147
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A SD A P + RKKV ++A + + ++G+P +++
Sbjct: 6 ALDIGDVRIGVAKSDIMGIIASPLETINRKKV-KSAKRIAEICKENDTNLIVVGIPKSLD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKVD 137
G E + R ++ + + + DER +TV A IL ++N + K+++ VD
Sbjct: 65 GEEKRQAEKVREYIKKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--VD 122
Query: 138 SIAAALILQEVLD--RISFLESSK 159
+AA++ILQ LD ++ FLE K
Sbjct: 123 KVAASIILQTYLDMKKLKFLEEGK 146
>gi|312131456|ref|YP_003998796.1| holliday junction resolvase yqgf [Leadbetterella byssophila DSM
17132]
gi|311908002|gb|ADQ18443.1| Holliday junction resolvase YqgF [Leadbetterella byssophila DSM
17132]
Length = 140
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G R GLA++DP + A L K Q L +I E + A ++GLPL+
Sbjct: 4 ILAIDYGKVRTGLAVTDPLQIIATA---LETVKTDQLINYLERYIQNEEVDALVLGLPLS 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
+ + P R+F + D+ +P F DER T+ A LI V +K R K
Sbjct: 61 LRSEDTPTTTMVRSFGEVLKDKFPDLPLHFIDERFTSKMASDTLISSGVKKKDRKVKGNT 120
Query: 137 DSIAAALILQEVL 149
D I+A +ILQ L
Sbjct: 121 DLISAVIILQSYL 133
>gi|327312426|ref|YP_004327863.1| RNAse H domain-containing protein, YqgF family [Prevotella
denticola F0289]
gi|326944800|gb|AEA20685.1| RNAse H domain protein, YqgF family [Prevotella denticola F0289]
Length = 139
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
I +ID G KR GLA++DP R A+ + T + L+ +I TE + +IG P+
Sbjct: 4 ILAIDYGKKRTGLAVTDPLRIIANGLATVA----TSGLFDFLTQYIGTETVEQLVIGRPV 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
+G + FV+ +P ++DER T+V A Q +I V +K R +
Sbjct: 60 QPDGRPSENLGRVEQFVNRWRKAHPELPVDYYDERFTSVIAHQAMIAGGVKKKTRRENKG 119
Query: 136 -VDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 120 LVDEISATIILQDYM 134
>gi|293372829|ref|ZP_06619207.1| RNAse YqgF [Bacteroides ovatus SD CMC 3f]
gi|292632204|gb|EFF50804.1| RNAse YqgF [Bacteroides ovatus SD CMC 3f]
Length = 141
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 17/150 (11%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENI 68
+ P I +ID G KR G+A+SD + A+ T ELL+FI E +
Sbjct: 1 MYPMSRIVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGEYIAKEPV 53
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMN 126
IIGLP MN + + FV ++ +K Y +P + DER T+V A + +++
Sbjct: 54 ERIIIGLPKQMNNEVSENMKNIEPFVRSL--KKCYPDLPVEYVDERFTSVLAHRTMLEAG 111
Query: 127 VSRKKRIQK--VDSIAAALILQEVLDRISF 154
+ +K R K VD I+A +ILQ L+ F
Sbjct: 112 LKKKDRQNKALVDEISATIILQTYLESKRF 141
>gi|89890525|ref|ZP_01202035.1| endonuclease involved in recombination repair [Flavobacteria
bacterium BBFL7]
gi|89517440|gb|EAS20097.1| endonuclease involved in recombination repair [Flavobacteria
bacterium BBFL7]
Length = 139
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A++DP + A L + ++ L ++ TE++ +IG P
Sbjct: 4 ILAIDYGKKRTGIAVTDPMQIIASG---LTTVATHELSVFLEKYLNTEDVETIVIGEPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
M+ ++ AF + ++ + DER T+ A Q +ID +S+ KR K V
Sbjct: 61 MDYTDSELGGVINAFAKALQEKYPAITIERVDERFTSKMAFQTMIDSGLSKSKRRNKALV 120
Query: 137 DSIAAALILQEVLDRIS 153
D IAA +ILQ +DR S
Sbjct: 121 DEIAATIILQTYMDRKS 137
>gi|163785970|ref|ZP_02180418.1| Holliday junction resolvase-like protein [Flavobacteriales
bacterium ALC-1]
gi|159877830|gb|EDP71886.1| Holliday junction resolvase-like protein [Flavobacteriales
bacterium ALC-1]
Length = 137
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID GTKR GLA++D + A + K++ L +++ TE++ F++GLP
Sbjct: 4 ILAIDYGTKRTGLAVTDEMQIIASGLTTVETKELVPF---LKNYVDTESVEKFVVGLPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
M+ + + F+ + ++P DER T+ A Q +ID + +K+R K +
Sbjct: 61 MDNTASESEVYIKKFLEILTKAIPHIPIERVDERFTSKMAFQTMIDSGLKKKQRQNKALI 120
Query: 137 DSIAAALILQEVL 149
D I+A LILQ L
Sbjct: 121 DEISATLILQSYL 133
>gi|326382144|ref|ZP_08203836.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326198874|gb|EGD56056.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis
NRRL B-59395]
Length = 142
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 66/138 (47%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++P +ID+G+ R+G+A+ DP A P + R K ++ IT + +
Sbjct: 2 IEPRGRRIAIDVGSVRVGVAVCDPDGILATPVETVRRSKDGADVARIVDLITEYDAVGVV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLP + G EGP V + R F + V F+DERLTTV+A L V K
Sbjct: 62 IGLPRTLRGEEGPAVRAARYFGRQLASEAEGVSIEFYDERLTTVTATTALRASGVKAKDA 121
Query: 133 IQKVDSIAAALILQEVLD 150
+D AA ILQ LD
Sbjct: 122 RAVIDQAAAVAILQGWLD 139
>gi|256820223|ref|YP_003141502.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271]
gi|256581806|gb|ACU92941.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271]
Length = 143
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
+ID GTKR G+A++DP + A + T T L L + E + AF+IG P M
Sbjct: 5 AIDYGTKRTGIAVTDPLQIIASGLCTVE----TSTLLAFLKQYTAEEAVEAFVIGQPKRM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137
N + + F+ + +P DER T+ A Q +ID + +K+R K +D
Sbjct: 61 NSEDSSVEAEIQKFISKLQQEFPEIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKALID 120
Query: 138 SIAAALILQEVL 149
I+A +ILQE L
Sbjct: 121 EISATIILQEFL 132
>gi|298243731|ref|ZP_06967538.1| Holliday junction resolvase YqgF [Ktedonobacter racemifer DSM
44963]
gi|297556785|gb|EFH90649.1| Holliday junction resolvase YqgF [Ktedonobacter racemifer DSM
44963]
Length = 162
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 22/148 (14%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G RIG+A D A P + V + QT + I + +IGLP+++
Sbjct: 8 ALDVGEARIGVAACDATGFLASPYTTIYVTRDEAQTWDAIERLIAETDAEGLVIGLPVSL 67
Query: 80 NG---SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI--- 133
+G ++G R+ AFV + + VP FWDERL+TV A+++ + K
Sbjct: 68 DGQIHAQGERI---MAFVERL-KAHIAVPVTFWDERLSTVEAERLRTQQGGRKSKHTGGR 123
Query: 134 -----------QKVDSIAAALILQEVLD 150
++D++AAA+ LQE LD
Sbjct: 124 QHSQGKRRRPGHEIDALAAAVFLQEYLD 151
>gi|329724707|gb|EGG61213.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
VCU144]
Length = 123
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L R Q L +L+ I + +I
Sbjct: 4 HKILGLDVGSKTVGIAISDLMGWTAQGLDTL-RINEEQDDLGIDQLVKIIKDNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESIPSIDIVMWDERLSTMAAERSLLEADVSRQKR 121
>gi|325851999|ref|ZP_08171082.1| RNAse H domain protein, YqgF family [Prevotella denticola CRIS
18C-A]
gi|325484555|gb|EGC87471.1| RNAse H domain protein, YqgF family [Prevotella denticola CRIS
18C-A]
Length = 139
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
I +ID G KR GLA++DP R A+ + T + L+ +I TE + +IG P+
Sbjct: 4 ILAIDYGKKRTGLAVTDPLRIIANGLATVA----TSGLFDFLTQYIETETVERLVIGRPV 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
+G + FV+ +P ++DER T+V A Q +I V +K R +
Sbjct: 60 QPDGRPSENLGRVEQFVNRWRKAHPELPVDYYDERFTSVIAHQAMIAGGVKKKTRRENKG 119
Query: 136 -VDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 120 LVDEISATIILQDYM 134
>gi|224053911|ref|XP_002298037.1| predicted protein [Populus trichocarpa]
gi|222845295|gb|EEE82842.1| predicted protein [Populus trichocarpa]
Length = 170
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 10/156 (6%)
Query: 5 LIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLS 61
L +L+K+ NQ +D+G K +GLA+SDP + A P L+RKK + A + S
Sbjct: 9 LFHELLKTSAINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNIELMATDFQS 68
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQ 119
I+ ++ FI+G P + P + FV ++ + V F +WDE T+ + +
Sbjct: 69 LISELSLGGFIVGYPFDRQRG-APDAVRVKLFVDDLCKTGKLEGVKFTYWDECFTSKNVE 127
Query: 120 QIL--IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
++ +D++ K I +D AA ILQ LD ++
Sbjct: 128 LLVKPLDLHPVHAKSI--MDKFAAVGILQGYLDYVN 161
>gi|330466939|ref|YP_004404682.1| holliday junction resolvase yqgf [Verrucosispora maris AB-18-032]
gi|328809910|gb|AEB44082.1| holliday junction resolvase yqgf [Verrucosispora maris AB-18-032]
Length = 152
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFIIG 74
+D+G RIG++ SDP A P + R++ V + +E+ + + ++G
Sbjct: 11 GVDVGQVRIGVSRSDPHGVLATPLVTVAREQKPRPDAVPKDLVEIAALVVEHEAVEVVVG 70
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP+N+ G GP +A+ + + VP DER++TV A + L + V KK+
Sbjct: 71 LPVNLAGRHGPAAEHVKAYARQLAEVIAPVPVTLTDERMSTVVASRRLAERGVRGKKQRA 130
Query: 135 KVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 131 VVDQAAAVEILQSWLD 146
>gi|16752801|ref|NP_445069.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
AR39]
gi|7189439|gb|AAF38349.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
Length = 154
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Query: 14 KPNQPIA--SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAA 70
KP+ A ID G KRIGLA + P + K + +A L I + NI
Sbjct: 6 KPSSCKAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITC 65
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSR 129
++G PL M + + + + + V + WDERL++V A+++L D +SR
Sbjct: 66 VVLGNPLPMQKGLYSSLQEEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGLSR 125
Query: 130 KKRIQKVDSIAAALILQEVLDRI 152
K R K DS+AA LIL LD +
Sbjct: 126 KDRKGKTDSLAATLILTSFLDSL 148
>gi|15618161|ref|NP_224446.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
CWL029]
gi|15835772|ref|NP_300296.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
J138]
gi|33241578|ref|NP_876519.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
TW-183]
gi|6226490|sp|Q9Z8U7|RUVX_CHLPN RecName: Full=Putative Holliday junction resolvase
gi|4376511|gb|AAD18390.1| YggF Family hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|8978610|dbj|BAA98447.1| YggF family hypothetical protein [Chlamydophila pneumoniae J138]
gi|33236086|gb|AAP98176.1| hypothetical protein CpB0243 [Chlamydophila pneumoniae TW-183]
gi|269303113|gb|ACZ33213.1| conserved hypothetical protein TIGR00250 [Chlamydophila pneumoniae
LPCoLN]
Length = 151
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Query: 14 KPNQPIA--SIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAA 70
KP+ A ID G KRIGLA + P + K + +A L I + NI
Sbjct: 3 KPSSCKAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITC 62
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSR 129
++G PL M + + + + + V + WDERL++V A+++L D +SR
Sbjct: 63 VVLGNPLPMQKGLYSSLQEEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGLSR 122
Query: 130 KKRIQKVDSIAAALILQEVLDRI 152
K R K DS+AA LIL LD +
Sbjct: 123 KDRKGKTDSLAATLILTSFLDSL 145
>gi|297742527|emb|CBI34676.3| unnamed protein product [Vitis vinifera]
Length = 224
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78
+D+G K +GLA+SD + A P L+RKK + A + S I+ ++A FI+G P N
Sbjct: 81 GLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATDFQSLISDLSLAGFIVGYPFN 140
Query: 79 MNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
S P + + F+ ++ + V + +WDE T+ + + +L +N+ + +
Sbjct: 141 RQRSS-PTAVNVKVFIDDLCKTGKLEGVRYTYWDECFTSKNVELLLKPLNLHPVQSKTIL 199
Query: 137 DSIAAALILQEVLDRIS 153
D AA ILQ LD ++
Sbjct: 200 DKFAAVGILQGYLDHVN 216
>gi|311113672|ref|YP_003984894.1| Holliday junction resolvase YqgF [Rothia dentocariosa ATCC 17931]
gi|310945166|gb|ADP41460.1| Holliday junction resolvase YqgF [Rothia dentocariosa ATCC 17931]
Length = 175
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 6/146 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
+D+G R+G ++SDP A P L R + +L + ++ +GLP M
Sbjct: 2 GVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGLPKTM 61
Query: 80 NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQ 134
G E R + H + +D + W DERLTTVSA + L + VS +
Sbjct: 62 RGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSRNFKT 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
VD +AA ILQ LD + ++ G
Sbjct: 122 MVDQVAAVNILQYSLDALKAGQAVAG 147
>gi|126662043|ref|ZP_01733042.1| Holliday junction resolvase-like protein [Flavobacteria bacterium
BAL38]
gi|126625422|gb|EAZ96111.1| Holliday junction resolvase-like protein [Flavobacteria bacterium
BAL38]
Length = 137
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
I +ID G KR G+A++D + A F + ++TA+ L + + E + + IIG P
Sbjct: 4 ILAIDYGIKRTGIAVTDEMQMIA----FGLTTIPSETAITFLKDYFSKEKVESVIIGEPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
MNG AFV + +P DER T+ A Q +ID +++K+R K
Sbjct: 60 QMNGEPSQSTDIINAFVVKFQEAFPEMPLNRVDERFTSKMAFQTMIDSGLNKKQRQNKAL 119
Query: 136 VDSIAAALILQEVL 149
VD IAA +ILQ+ L
Sbjct: 120 VDEIAATIILQDYL 133
>gi|300741579|ref|ZP_07071600.1| putative Holliday junction resolvase [Rothia dentocariosa M567]
gi|300380764|gb|EFJ77326.1| putative Holliday junction resolvase [Rothia dentocariosa M567]
Length = 184
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 6/146 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
+D+G R+G ++SDP A P L R + +L + ++ +GLP M
Sbjct: 11 GVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGLPKTM 70
Query: 80 NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQ 134
G E R + H + +D + W DERLTTVSA + L + VS +
Sbjct: 71 RGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSRNFKT 130
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
VD +AA ILQ LD + ++ G
Sbjct: 131 MVDQVAAVNILQYSLDALKAGQAVAG 156
>gi|46581473|ref|YP_012281.1| hypothetical protein DVU3070 [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601357|ref|YP_965757.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4]
gi|62900991|sp|Q726N6|RUVX_DESVH RecName: Full=Putative Holliday junction resolvase
gi|167012717|sp|A1VA64|RUVX_DESVV RecName: Full=Putative Holliday junction resolvase
gi|46450895|gb|AAS97541.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120561586|gb|ABM27330.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4]
gi|311235125|gb|ADP87979.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris RCH1]
Length = 142
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID G +R G+A++D G R A PR + +ELL + E AF++GLP
Sbjct: 5 GIDYGQRRTGIAVTDAGGRMAFPRRTIAMTTRDAFFVELLGMVEVECPDAFVVGLPRLPG 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G E R FV + R+ +P F E L++ A+ L D + ++ VD A
Sbjct: 65 GEETLTTRQVRNFVERL-KRRTTLPVYFMPEELSSFEAEDDLRDAGLRGRRLEAVVDQQA 123
Query: 141 AALILQEVL 149
A IL+ L
Sbjct: 124 AVRILESFL 132
>gi|228472378|ref|ZP_04057143.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
33624]
gi|228276246|gb|EEK14981.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
33624]
Length = 135
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID GTKR G+A++D + A L + T+ L + E + I+GLP
Sbjct: 3 ILAIDYGTKRCGIAVTDELKLIASA---LATVETTELLDFLEKYCQAEQVERIIVGLPKQ 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
++G + F+ + ++ +P +DER T+ A IL+ +KKR K +
Sbjct: 60 VSGELSESEQAIAPFIEKLQEKLPKIPVSRYDERFTSKIASHILVQSGTKKKKRQDKALL 119
Query: 137 DSIAAALILQEVL 149
D I+A LILQ+ L
Sbjct: 120 DRISATLILQDYL 132
>gi|15835074|ref|NP_296833.1| Holliday junction resolvase-like protein [Chlamydia muridarum Nigg]
gi|14195475|sp|Q9PKK9|RUVX_CHLMU RecName: Full=Putative Holliday junction resolvase
gi|7190501|gb|AAF39309.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
Length = 148
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENI 68
+ S+K + +D G KRIGLA + P + + TA L++ I +
Sbjct: 1 MNSMKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAV 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV 127
+ G PL M S V S + ++ + + WDERL++ A+++L D +
Sbjct: 61 TTVVFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGL 120
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
SRK+R DS+AA LIL LD
Sbjct: 121 SRKQRKNSSDSLAATLILSSFLD 143
>gi|229827984|ref|ZP_04454053.1| hypothetical protein GCWU000342_00032 [Shuttleworthia satelles DSM
14600]
gi|229792578|gb|EEP28692.1| hypothetical protein GCWU000342_00032 [Shuttleworthia satelles DSM
14600]
Length = 147
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I ++D G K +G+A +D A + RK K+ +T + I ++GL
Sbjct: 10 IMALDYGAKTVGVACTDSLGLTAQAVETVWRKRENKLRKTLARIDQIARDREIRLILVGL 69
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+NM+ SEG R R F + + ++ + +DERL+T+ A +IL V KR +
Sbjct: 70 PVNMDDSEGERAGMARDFA-DQVAQRTGIAVEMYDERLSTIEADEILGKSGVPVGKRKRH 128
Query: 136 VDSIAAALILQEVLD 150
+D ++A LIL+ L+
Sbjct: 129 LDELSAQLILERYLE 143
>gi|226951815|ref|ZP_03822279.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244]
gi|226837355|gb|EEH69738.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244]
Length = 147
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L P Q I + D GT+++G+AI A+P P K +LL + FI
Sbjct: 4 LNPPQSIMAFDFGTQKMGMAIGQSSIESANPLPLFSMKDGIPDWNQLLKIVKEWQPNLFI 63
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+ SE R F + + ++ DERLTT A++ L + +
Sbjct: 64 VGLPLNMDDSESELSARARKFARRLRHQTNITTWMV-DERLTTREAREELEFYQSKGQAK 122
Query: 133 IQKVDSIAAALILQ 146
DS AAAL++Q
Sbjct: 123 RLSADSFAAALLIQ 136
>gi|315225648|ref|ZP_07867456.1| Holliday junction resolvase [Capnocytophaga ochracea F0287]
gi|314944375|gb|EFS96416.1| Holliday junction resolvase [Capnocytophaga ochracea F0287]
Length = 143
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
+ID GTKR G+A++DP + A + T T L L + E + AF+IG P M
Sbjct: 5 AIDYGTKRTGIAVTDPLQIIASGLCTVE----TPTLLAFLKQYTAEEAVEAFVIGQPKRM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137
N + + F+ + +P DER T+ A Q +ID + +K+R K +D
Sbjct: 61 NSEDSSVEAEIQKFISKLQQEFPEIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKALID 120
Query: 138 SIAAALILQEVL 149
I+A +ILQE L
Sbjct: 121 EISATIILQEFL 132
>gi|226226072|ref|YP_002760178.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27]
gi|226089263|dbj|BAH37708.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27]
Length = 168
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
++D G KRIGLA+SD A P + R+ + + E++ ++ +I GLPL+
Sbjct: 10 AVDWGDKRIGLAVSDELGMLASPAGVIARRAGKRPPIAEIMRQAEALGVSGYIFGLPLDP 69
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G E R R + R+ +P DER TT +A + + + S + R VD++
Sbjct: 70 GGDETDRSREVREVAGKLATRQ-PLPVRLVDERFTTSAALRSIREQGGSTRGRKGDVDAL 128
Query: 140 AAALILQEVL 149
AA ++L+ VL
Sbjct: 129 AACVLLEGVL 138
>gi|269218534|ref|ZP_06162388.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
848 str. F0332]
gi|269211645|gb|EEZ77985.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
848 str. F0332]
Length = 156
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNMNG 81
D+G RIG+A DP A P L R ++ ++ + I + A I+GLPLNM+G
Sbjct: 10 DVGQVRIGVAQCDPEGILATPVETLWRG---ESDIDDAAQIVRDCEAMEVIVGLPLNMDG 66
Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
+EG RA+ + + P DERL+TV+A LI + +K+ VD AA
Sbjct: 67 TEGASARDARAWAAKLAESVAPAPVRLVDERLSTVTAHGQLIAAGRNSRKQRSIVDQAAA 126
Query: 142 ALILQEVLD 150
+IL L+
Sbjct: 127 VVILNTALE 135
>gi|330444557|ref|YP_004377543.1| hypothetical protein G5S_0903 [Chlamydophila pecorum E58]
gi|328807667|gb|AEB41840.1| conserved hypothetical protein TIGR00250 [Chlamydophila pecorum
E58]
Length = 146
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+D G KR+GLA + + P + R K + L I E +++ I+G P+ M
Sbjct: 12 GVDYGLKRVGLACASAPLFLSVPIGTVERGKNLDVIVTTLRKIIVERHVSCVILGNPIPM 71
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDS 138
G++ + A + + + WDERL++ A+++L D +SRK+R K D+
Sbjct: 72 YGNQVSALQEEIAIFAKKLKEATCIEVILWDERLSSAQAERMLKHDCGLSRKQRKGKTDT 131
Query: 139 IAAALILQEVLDRI 152
+AA LIL L+R
Sbjct: 132 LAATLILSSFLERC 145
>gi|37926502|pdb|1IV0|A Chain A, Solution Structure Of The Yqgf-Family Protein (N-Terminal
Fragment)
Length = 98
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G RIGLA+ + G A R +LVRK + + LL F+ E + ++GLPL
Sbjct: 3 VGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLR 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT 115
+ E + V + R V V WDER TT
Sbjct: 63 TDLKESAQAGKVLPLVEALRARGVEVE--LWDERFTT 97
>gi|118617375|ref|YP_905707.1| Holliday junction resolvase-like protein [Mycobacterium ulcerans
Agy99]
gi|183982184|ref|YP_001850475.1| hypothetical protein MMAR_2171 [Mycobacterium marinum M]
gi|167012739|sp|A0PPG7|RUVX_MYCUA RecName: Full=Putative Holliday junction resolvase
gi|226731630|sp|B2HNC2|RUVX_MYCMM RecName: Full=Putative Holliday junction resolvase
gi|118569485|gb|ABL04236.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
gi|183175510|gb|ACC40620.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 170
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 62/139 (44%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID+GT RIG+A SDP A P + R++ + L + + I+GLP +
Sbjct: 29 GIDVGTVRIGVASSDPDGILATPLETVRRERSGKHLRRLATLVGETEAVEVIVGLPRTLA 88
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G + R +P DERLTTVSAQ+ L + V K + +D A
Sbjct: 89 DRIGSSAQDAIDLADELAARVAPIPVRLADERLTTVSAQRSLREAGVRAKNQRAVIDQAA 148
Query: 141 AALILQEVLDRISFLESSK 159
A ILQ LD+ L +
Sbjct: 149 AVAILQAWLDQRRTLAGGR 167
>gi|260591630|ref|ZP_05857088.1| putative Holliday junction resolvase [Prevotella veroralis F0319]
gi|260536430|gb|EEX19047.1| putative Holliday junction resolvase [Prevotella veroralis F0319]
Length = 139
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR GLA++DP R A+ L + L ++ E + +IG P+
Sbjct: 4 ILAIDYGKKRTGLAVTDPLRIIAN---GLATIPTSDIFDYLTQYVAKEPVDQLVIGKPIQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
NG + FV+ +P ++DER T+V A Q +I V +K R +
Sbjct: 61 PNGQPSENLARVENFVNRWRKLHPEMPIDYYDERFTSVIAHQAMIAGGVKKKTRREDKGL 120
Query: 136 VDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 121 VDEISATIILQDYM 134
>gi|22299872|ref|NP_683119.1| Holliday junction resolvase-like protein [Thermosynechococcus
elongatus BP-1]
gi|32130026|sp|Q8DGI8|RUVX_THEEB RecName: Full=Putative Holliday junction resolvase
gi|22296057|dbj|BAC09881.1| tll2329 [Thermosynechococcus elongatus BP-1]
Length = 151
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +DLG KRIG+A D + A + R+ +L + I+GLP
Sbjct: 4 VLGLDLGRKRIGVAGCDRLGQLATGITTIYRRNFASDVAQLRRICQERGVEKLIVGLPYT 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G G + + I + +P + DERLT+ A++IL S + VD
Sbjct: 64 LDGQLGSQARQVQHLAEK-IGAALNLPVEYIDERLTSFQAEEILKQRRRSPRHHKDLVDQ 122
Query: 139 IAAALILQEVLD 150
IAAALILQ+ LD
Sbjct: 123 IAAALILQQWLD 134
>gi|126657653|ref|ZP_01728808.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110]
gi|126621109|gb|EAZ91823.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110]
Length = 143
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KRIG+A D A + R+ Q +L + +T +IGLP +M+
Sbjct: 8 GLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDVQQLQTLVTEREAQLLVIGLPYSMD 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS G + + F I + + +P + DERLT+V A+ L + VD +A
Sbjct: 68 GSIGFQAKQVQKFAKR-ISKALELPVEYIDERLTSVEAETKLKAQKKYSRHNKGLVDRLA 126
Query: 141 AALILQEVLDR 151
A +ILQ+ LD+
Sbjct: 127 ATIILQQWLDQ 137
>gi|269114906|ref|YP_003302669.1| Putative holliday junction resolvase [Mycoplasma hominis]
gi|268322531|emb|CAX37266.1| Putative Holliday junction resolvase [Mycoplasma hominis ATCC
23114]
Length = 144
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 15/146 (10%)
Query: 19 IASIDLGTKRIGLAISDPGR---------RFAHPRPFLVRKKVTQTALELLSFITTE-NI 68
I ++DLGTK G AISDP RF LV +KV L L+ + +I
Sbjct: 3 ILALDLGTKSCGFAISDPNNIIASGLENFRFELNHFNLVIEKV----LHYLNKSEYQGSI 58
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++G PL M+ S+ R + F + + V +P VF DER +T+ AQ+IL +
Sbjct: 59 GTIVLGYPLRMDLSKSQRTYMVERFGERL-KKVVDIPVVFQDERQSTIGAQEILQSAGWN 117
Query: 129 RKKRIQKVDSIAAALILQEVLDRISF 154
KK K DS+AA LIL++ L I +
Sbjct: 118 TKKSKSKKDSLAAQLILEDYLKGIKY 143
>gi|78187998|ref|YP_378336.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3]
gi|146325560|sp|Q3AUD8|RUVX_CHLCH RecName: Full=Putative Holliday junction resolvase
gi|78170197|gb|ABB27293.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3]
Length = 140
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGL 75
Q I +ID GTKRIG+A SDP FA P + R +++ LLS + + ++G
Sbjct: 5 QRIVAIDYGTKRIGVAKSDPLGMFAQPIGTVDRAGLSK----LLSPMVEAGEVQLVVVGY 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLN +G + F+ ++ +P +E ++ SA Q+L+ SRK+R K
Sbjct: 61 PLNRHGEQTAMTEVIDRFIESLRLEFPALPIETINEHCSSKSAMQLLVASGTSRKERKTK 120
Query: 136 --VDSIAAALILQEVLDR 151
+D+ AA L+L + L++
Sbjct: 121 GRLDTAAACLLLSDYLEQ 138
>gi|150007310|ref|YP_001302053.1| Holliday junction resolvase-like protein [Parabacteroides
distasonis ATCC 8503]
gi|167012744|sp|A6L9R7|RUVX_PARD8 RecName: Full=Putative Holliday junction resolvase
gi|149935734|gb|ABR42431.1| putative endonuclease [Parabacteroides distasonis ATCC 8503]
Length = 140
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 11/143 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A +D + A+ + +V + L +I+ E + F++GL
Sbjct: 4 IIAIDYGRKRTGIAATDILQMIANGVATVPSGEVVKY---LSDYISREPVDLFVVGLRKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN + AFV ++ +P ++DER T+V A + +++ + +KKR K V
Sbjct: 61 MNNEPSENMKYVEAFVTHLKRTIPSIPVTYYDERFTSVLAHKAMLEGGLKKKKRQDKGLV 120
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D I+A +ILQ ++LES K
Sbjct: 121 DEISAVIILQ------AYLESKK 137
>gi|325963400|ref|YP_004241306.1| hypothetical protein Asphe3_20170 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469487|gb|ADX73172.1| conserved hypothetical protein TIGR00250 [Arthrobacter
phenanthrenivorans Sphe3]
Length = 199
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+D+GT R+G+AI D A P L R + + +++ + E I+GLP M
Sbjct: 17 GVDVGTVRVGVAICDRDSVLATPYKTLDRNARKNSDIRIIANLVDELGAVQVIVGLPRTM 76
Query: 80 NGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
G E R + + R + VP DERL++V+A + L + +S + +
Sbjct: 77 KGEERSSAEMAREYAALLAGELAGRGLAVPVNLVDERLSSVTAHRHLHEAGMSSRNHRKV 136
Query: 136 VDSIAAALILQEVLD 150
VD +AAA ILQ +D
Sbjct: 137 VDQVAAAGILQHAID 151
>gi|255327163|ref|ZP_05368238.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296]
gi|255295781|gb|EET75123.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296]
Length = 178
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
+D+G R+G A+SDP A P L R + +L I + +GLP M
Sbjct: 2 GVDVGNARVGTALSDPDGILATPLKTLRRDAKKNSDRRVLRKLIEVNEVVEVFVGLPKTM 61
Query: 80 NGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
G + P R + + + K ++ DERLTTVSA + L + VS +
Sbjct: 62 RGGDSPSTEMAREYAQALRSELDAEEKTHINIWLVDERLTTVSAHRALHEAGVSSRDFKT 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
VD +AA ILQ LD + +S G
Sbjct: 122 MVDQVAAVNILQYSLDALKAGQSVAG 147
>gi|33152804|ref|NP_874157.1| Holliday junction resolvase-like protein [Haemophilus ducreyi
35000HP]
gi|62901013|sp|Q7VKS6|RUVX_HAEDU RecName: Full=Putative Holliday junction resolvase
gi|33149028|gb|AAP96546.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 138
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 31/147 (21%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
I + D GT IG A+ + +T+TA L +F + + I +
Sbjct: 5 ILAFDFGTYSIGCAVG---------------QSITKTAQSLTAFKSQDGIPNWQHIEKII 49
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLPLNM+GSE P R F N ++ + +P DERLTT A+ +
Sbjct: 50 KEWQPDLLVVGLPLNMDGSEQPLTQRARKFA-NRLNGRFNLPVALQDERLTTTEAKSEIF 108
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + K+D+I+A LIL+ D
Sbjct: 109 SRGGYKALKKDKIDTISACLILESWFD 135
>gi|294621483|ref|ZP_06700651.1| conserved hypothetical protein [Enterococcus faecium U0317]
gi|291598924|gb|EFF29973.1| conserved hypothetical protein [Enterococcus faecium U0317]
Length = 124
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
+ +D+G+K +G+A+SDP F + ++ + E L + + F++
Sbjct: 3 VMGLDVGSKTVGVAVSDP---FGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVV 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKR 132
GLP NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR
Sbjct: 60 GLPKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKR 118
>gi|291301347|ref|YP_003512625.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM
44728]
gi|290570567|gb|ADD43532.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM
44728]
Length = 151
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 5/136 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTEN-IAAFIIGL 75
+D+G R+G+A+SDP A P + R K V + ++ + E+ + +IGL
Sbjct: 12 GVDVGKVRVGVALSDPDGILAAPLETVPRDMSGKSVPPADISRIADLVNEHSVVEIVIGL 71
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ ++G E +RA+ + VP F DERLTT A + L + V K+R
Sbjct: 72 PVTLSGEESYAAAESRAYAEQVTAAVGDVPVRFVDERLTTAVASRRLSERGVKGKRRKAV 131
Query: 136 VDSIAAALILQEVLDR 151
VD AA ILQ L++
Sbjct: 132 VDQAAAVEILQLWLEK 147
>gi|42520048|ref|NP_965963.1| hypothetical protein WD0143 [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|99034738|ref|ZP_01314668.1| hypothetical protein Wendoof_01000517 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|62900994|sp|Q73IL4|RUVX_WOLPM RecName: Full=Putative Holliday junction resolvase
gi|42409785|gb|AAS13897.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 155
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 7/153 (4%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
++ +KS+ ++ I +D+G K+IG+A SD + A RK +++ L L I E
Sbjct: 7 DEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKD-LGYLHRIFKE 65
Query: 67 N-IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL--I 123
N + +IGLPL M+ E + F + +I +K V DE +T A L
Sbjct: 66 NESGSMVIGLPLKMDEQETKWCKTIIQFANKII-KKYKVNIYLQDESFSTSIATHTLKIT 124
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
+++++ K+I D I+A +ILQ LD+I+ ++
Sbjct: 125 GISITKSKKID--DKISACIILQRTLDKINTIK 155
>gi|306818739|ref|ZP_07452461.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35239]
gi|304648425|gb|EFM45728.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35239]
Length = 153
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G R+G+A + A P L + EL SFI E A +GLP +N
Sbjct: 8 GVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGLPRLLN 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG R++ + + +P DERL++V+A + L VS ++ + VD +A
Sbjct: 68 GKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVA 127
Query: 141 AALILQEVLD 150
A IL++ L+
Sbjct: 128 AQQILEQALE 137
>gi|32034409|ref|ZP_00134591.1| COG0816: Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126207719|ref|YP_001052944.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae L20]
gi|165975691|ref|YP_001651284.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|303251647|ref|ZP_07337820.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303252798|ref|ZP_07338958.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307245044|ref|ZP_07527138.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307247216|ref|ZP_07529266.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307251761|ref|ZP_07533664.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307253998|ref|ZP_07535846.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258453|ref|ZP_07540191.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307260688|ref|ZP_07542378.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|167012686|sp|A3MYV3|RUVX_ACTP2 RecName: Full=Putative Holliday junction resolvase
gi|226725479|sp|B0BSN8|RUVX_ACTPJ RecName: Full=Putative Holliday junction resolvase
gi|126096511|gb|ABN73339.1| putative Holliday junction resolvase [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165875792|gb|ABY68840.1| putative Holliday junction resolvase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|302648359|gb|EFL78555.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302649489|gb|EFL79672.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306854032|gb|EFM86243.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306856274|gb|EFM88427.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306860762|gb|EFM92772.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306863024|gb|EFM94970.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867458|gb|EFM99308.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306869609|gb|EFN01396.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 137
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GT IG A+ A P + ++ I ++GLPLN
Sbjct: 5 ILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSE P + F N ++ + +P DERLTTVSA+ + + + + KVDS
Sbjct: 65 MDGSEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKVDS 123
Query: 139 IAAALILQEVLD 150
I+A LIL+ +
Sbjct: 124 ISACLILESWFE 135
>gi|283458021|ref|YP_003362629.1| putative endonuclease involved in recombination [Rothia
mucilaginosa DY-18]
gi|283134044|dbj|BAI64809.1| predicted endonuclease involved in recombination [Rothia
mucilaginosa DY-18]
Length = 187
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
+D+G R+G A+SDP A P L R + +L I + +GLP M
Sbjct: 11 GVDVGNARVGTALSDPDGILATPLKTLRRDAKKNSDRRVLRKLIEVNEVVEVFVGLPKTM 70
Query: 80 NGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
G + P R + + + K ++ DERLTTVSA + L + VS +
Sbjct: 71 RGGDSPSTEMAREYAQALRSELDAEEKTHINIWLVDERLTTVSAHRALHEAGVSSRDFKT 130
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
VD +AA ILQ LD + +S G
Sbjct: 131 MVDQVAAVNILQYSLDALKAGQSVAG 156
>gi|282881720|ref|ZP_06290383.1| putative RNAse [Prevotella timonensis CRIS 5C-B1]
gi|281304479|gb|EFA96576.1| putative RNAse [Prevotella timonensis CRIS 5C-B1]
Length = 137
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
I SID G KR G+A++D + A+ + T + L +++ E + +IG P+
Sbjct: 3 ILSIDYGKKRTGIAVTDSLQIIANGLATVA----TSALFDFLKTYVAQEEVERIVIGKPM 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
NG + FV+ +P F+DER T+V A Q ++ + +K R K
Sbjct: 59 QTNGKPSENFARVQQFVNRWRKAMPQIPIEFYDERFTSVLAHQAILQSGIGKKARQNKAL 118
Query: 136 VDSIAAALILQEVLDRISFLESSK 159
VD ++A +ILQ S++ES +
Sbjct: 119 VDEVSATIILQ------SYMESRR 136
>gi|171910330|ref|ZP_02925800.1| hypothetical protein VspiD_04140 [Verrucomicrobium spinosum DSM
4136]
Length = 151
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID GT RIGLA+SD AHP + V Q E+ + + + ++GLPL M
Sbjct: 5 GIDHGTVRIGLALSDELGLAAHPLKTLDTSPSVEQ---EIAEIVRQKRVTTVVLGLPLRM 61
Query: 80 NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135
+G G AF + + +V V FV DERLT+V+A++ L + +K + QK
Sbjct: 62 DGHRGEAATRVEAFADRLSKALRHEVTVKFV--DERLTSVAAERSL-GLEGKQKTKEQKK 118
Query: 136 -VDSIAAALILQEVLD 150
VD +AA ILQ+ L+
Sbjct: 119 LVDQVAAVAILQDYLN 134
>gi|257068796|ref|YP_003155051.1| hypothetical protein Bfae_16350 [Brachybacterium faecium DSM 4810]
gi|256559614|gb|ACU85461.1| conserved hypothetical protein TIGR00250 [Brachybacterium faecium
DSM 4810]
Length = 181
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTENIAAFIIGLP 76
+D+G R+GLA SD A P L R +V + A EL + + ++GLP
Sbjct: 21 GVDVGDVRVGLARSDLDGMIATPVETLERGSAVARVVEEARELEARV-------IMVGLP 73
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW----DERLTTVSAQQILIDMNVSRKKR 132
++NG+EG R F ++ P DERLTTV+A Q L +K
Sbjct: 74 RSLNGAEGAAAQKARDFAAELLTSLASGPTEIEVRMIDERLTTVTAHQALHRSGRKGRKH 133
Query: 133 IQKVDSIAAALILQEVLD 150
VD +AA +ILQ+ LD
Sbjct: 134 RSVVDQVAAVMILQQALD 151
>gi|307700938|ref|ZP_07637963.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16]
gi|307613933|gb|EFN93177.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16]
Length = 153
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G R+G+A + A P L + EL SFI E A +GLP +N
Sbjct: 8 GVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETATAVFVGLPRLLN 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG R++ + + +P DERL++V+A + L VS ++ + VD +A
Sbjct: 68 GKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVA 127
Query: 141 AALILQEVLD 150
A IL++ L+
Sbjct: 128 AQQILEQALE 137
>gi|118470819|ref|YP_887343.1| Holliday junction resolvase-like protein [Mycobacterium smegmatis
str. MC2 155]
gi|226731631|sp|A0QWQ5|RUVX_MYCS2 RecName: Full=Putative Holliday junction resolvase
gi|118172106|gb|ABK73002.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
Length = 170
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFIIGLPL 77
ID+GT RIG+A SDP A P + R K +T L + + I+GLP
Sbjct: 23 GIDVGTVRIGVASSDPDGILATPVETVARDKRDKTGKHVRRLAALVKEYEAVEVIVGLPR 82
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ H + R P DERLTTVSAQ+ L + V + + +D
Sbjct: 83 TLGDRASASAHDAVDVAEQLARRIAPTPVRLADERLTTVSAQRSLREAGVRARGQKAVID 142
Query: 138 SIAAALILQEVLDR 151
+AA ILQ LD+
Sbjct: 143 QVAAVGILQGWLDQ 156
>gi|83814264|ref|YP_445196.1| hypothetical protein SRU_1064 [Salinibacter ruber DSM 13855]
gi|294507080|ref|YP_003571138.1| Holliday junction resolvase [Salinibacter ruber M8]
gi|126352257|sp|Q2S3N5|RUVX_SALRD RecName: Full=Putative Holliday junction resolvase
gi|83755658|gb|ABC43771.1| conserved hypothetical protein TIGR00250 [Salinibacter ruber DSM
13855]
gi|294343408|emb|CBH24186.1| Putative Holliday junction resolvase [Salinibacter ruber M8]
Length = 143
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENI 68
+ +L + ID+GTKR+G+A++DP R FA P AL++L + + I
Sbjct: 1 MSTLSSEARVVGIDVGTKRVGVAVADPLRLFAQPHGTY----APDEALDVLQALRDADGI 56
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++G PL G+ A+V + + V DER T+ A+ +L + VS
Sbjct: 57 ARIVVGWPLTEEGTAEEATEMVEAYVERIREALGTVEVAREDERYTSEIAKDLLREAGVS 116
Query: 129 RKKRIQK--VDSIAAALILQEVLDR 151
+ R K VD+ AAA+ILQ L+R
Sbjct: 117 QPGRYDKGRVDAAAAAVILQGFLNR 141
>gi|225164228|ref|ZP_03726502.1| Holliday junction resolvase YqgF [Opitutaceae bacterium TAV2]
gi|224801167|gb|EEG19489.1| Holliday junction resolvase YqgF [Opitutaceae bacterium TAV2]
Length = 144
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GT+RIGLA D A P P L + L + + I ++G P NM+
Sbjct: 5 GIDYGTRRIGLAYGDE-LGIATPIPALTDADPAKRRTALAAVVKQRRITDLVLGYPYNMD 63
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS G + AF ++ + +P DERLT+ A+ + + + VDS A
Sbjct: 64 GSAGFKAKEVDAFAESL-RAEFALPVHLIDERLTSHMAESGMSQKKLREIRSQGIVDSRA 122
Query: 141 AALILQEVLDR 151
AALILQ+ LD+
Sbjct: 123 AALILQDFLDQ 133
>gi|269977320|ref|ZP_06184293.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1]
gi|269934623|gb|EEZ91184.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1]
Length = 153
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G R+G+A + A P L + EL SFI E A +GLP +N
Sbjct: 8 GVDVGKVRVGIAQAYLDTTLALPVKTLKVQADGSELEELASFIREETTTAVFVGLPRLLN 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EG R++ + + +P DERL++V+A + L VS ++ + VD +A
Sbjct: 68 GKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVA 127
Query: 141 AALILQEVLD 150
A IL++ ++
Sbjct: 128 AQQILEQAIE 137
>gi|302346307|ref|YP_003814605.1| RNAse YqgF [Prevotella melaninogenica ATCC 25845]
gi|302150718|gb|ADK96979.1| RNAse YqgF [Prevotella melaninogenica ATCC 25845]
Length = 139
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
I +ID G KR GLA++DP A+ + T E L+ +I E ++ +IG P+
Sbjct: 4 ILAIDYGKKRTGLAVTDPLCIIANGLATVP----TSELFEFLNQYIAKEAVSQLVIGKPI 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
NG + FV+ +P ++DER T+V A Q +I V +K R +
Sbjct: 60 QPNGQPSENLARVEQFVNRWRKAHPELPIDYYDERFTSVIAHQAMIAGGVKKKTRREDKG 119
Query: 136 -VDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 120 LVDEISATIILQDYM 134
>gi|162447762|ref|YP_001620894.1| putative holliday junction resolvase [Acholeplasma laidlawii PG-8A]
gi|161985869|gb|ABX81518.1| predicted holliday junction resolvase [Acholeplasma laidlawii
PG-8A]
Length = 140
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
+DLG K +G+AIS+ G ++ + + + A+E LL + I ++GLP +M
Sbjct: 5 GLDLGEKSLGVAISESGIIASNLTTIRFKSEDYEDAVEQLLKLLNQYKIDCVVLGLPKHM 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
N G + F ++ K V + WDERL+T +A +IL D N K+ D +
Sbjct: 65 NNDIGLKGQMAIDF-KTLLASKSNVQVILWDERLSTKTALRILSDSNKKYDKQRNLKDEV 123
Query: 140 AAALILQEVLD 150
AA +ILQ L+
Sbjct: 124 AAQVILQNYLN 134
>gi|206895527|ref|YP_002247114.1| hypothetical protein COPRO5265_0767 [Coprothermobacter
proteolyticus DSM 5265]
gi|206738144|gb|ACI17222.1| conserved hypothetical protein [Coprothermobacter proteolyticus DSM
5265]
Length = 137
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 19/139 (13%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA--AFIIGLP 76
I ++D G KRIG+A SD +A P K + LE I + I ++GLP
Sbjct: 2 IVAVDFGLKRIGMARSDDSETWAFP-----HKTLEGNDLETKLIIELKKIGPRVVVLGLP 56
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT--VSAQQILIDMNVSRKKRIQ 134
NM+G+EG + RA + D V FWDERLT+ VS Q S KK I+
Sbjct: 57 RNMDGTEGEMAVAVRALGQRLED--VGFTVDFWDERLTSRLVSRQD-----PRSLKKAIK 109
Query: 135 ---KVDSIAAALILQEVLD 150
KVD ++A LILQE ++
Sbjct: 110 DKGKVDLMSAVLILQEYIN 128
>gi|311894841|dbj|BAJ27249.1| putative Holliday junction resolvase [Kitasatospora setae KM-6054]
Length = 157
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A+ DP A P + +Q L+ + + + ++GLP ++N
Sbjct: 13 AVDVGDARIGVAVCDPDGLIATPVETVPAGGRSQARLK--AIVEEYDAVEVVVGLPRSLN 70
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP R + + V DER+TTV+A L S KK +D A
Sbjct: 71 GKEGPAAAKVREYAGRLAGLLYPVGVRLVDERMTTVTAAAGLRASGRSSKKGRSVIDQAA 130
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 131 AVVILQSALE 140
>gi|238021394|ref|ZP_04601820.1| hypothetical protein GCWU000324_01293 [Kingella oralis ATCC 51147]
gi|237868374|gb|EEP69380.1| hypothetical protein GCWU000324_01293 [Kingella oralis ATCC 51147]
Length = 164
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G RIG A D R AHP + + + + I I+GLP++++
Sbjct: 14 AFDFGETRIGAAQGDCRIRIAHPIATITGNSNDEKFARIAALIQEWQPENLIVGLPVHID 73
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSE R F H + R +P + DERL++V A+++L + V +K+ +D +A
Sbjct: 74 GSEHALTRLARKFGHRLNGR-FRLPVYWVDERLSSVYAEELLRENGVRGRKQKPVLDQVA 132
Query: 141 AALILQEVLD 150
A ILQ D
Sbjct: 133 AQAILQSFFD 142
>gi|167763508|ref|ZP_02435635.1| hypothetical protein BACSTE_01882 [Bacteroides stercoris ATCC
43183]
gi|329954513|ref|ZP_08295604.1| RNAse H domain protein, YqgF family [Bacteroides clarus YIT 12056]
gi|167698802|gb|EDS15381.1| hypothetical protein BACSTE_01882 [Bacteroides stercoris ATCC
43183]
gi|328527481|gb|EGF54478.1| RNAse H domain protein, YqgF family [Bacteroides clarus YIT 12056]
Length = 141
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
I +ID G KR G+A+SD + A+ T ELL+FI E + ++G
Sbjct: 4 IIAIDYGKKRTGIAVSDTLQMIAN-------GLTTVPTHELLAFIMDYVAKEPVERILVG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 57 LPKQMNNEASENMKRIEPFVRSLQKRLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLDRISF 154
K VD I+A +ILQ L+ F
Sbjct: 117 KALVDEISATIILQTYLENRRF 138
>gi|160872335|ref|ZP_02062467.1| conserved hypothetical protein [Rickettsiella grylli]
gi|159121134|gb|EDP46472.1| conserved hypothetical protein [Rickettsiella grylli]
Length = 139
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G K IG+AI A P L KK E+ + + ++G+P N
Sbjct: 7 VIGFDFGLKYIGVAIGQTSPSLAQPLTNLSVKKGNLPWEEIAQLLKMWSPDVIVVGVPFN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E P R F+ + +R +P DERLTTV A+ L + + + + +DS
Sbjct: 67 MDGTEQPITREARNFLMELKNR-FEIPVFPVDERLTTVEARSRLFALGGYKALKKKSIDS 125
Query: 139 IAAALILQEVLD 150
IAA LI++ L+
Sbjct: 126 IAAQLIVEIWLE 137
>gi|288802834|ref|ZP_06408271.1| Holliday junction resolvase [Prevotella melaninogenica D18]
gi|288334651|gb|EFC73089.1| Holliday junction resolvase [Prevotella melaninogenica D18]
Length = 139
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
I +ID G KR GLA++DP A+ + T E L+ +I E ++ +IG P+
Sbjct: 4 ILAIDYGKKRTGLAVTDPLCIIANGLATVP----TSELFEFLNQYIVKEAVSQLVIGKPI 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
NG + FV+ +P ++DER T+V A Q +I V +K R +
Sbjct: 60 QPNGQPSENLARVEQFVNRWRKAHPELPIDYYDERFTSVIAHQAMIAGGVKKKTRREDKG 119
Query: 136 -VDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 120 LVDEISATIILQDYM 134
>gi|317476773|ref|ZP_07936016.1| hypothetical protein HMPREF1016_03000 [Bacteroides eggerthii
1_2_48FAA]
gi|316906948|gb|EFV28659.1| hypothetical protein HMPREF1016_03000 [Bacteroides eggerthii
1_2_48FAA]
Length = 141
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 15/145 (10%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
I +ID G KR G+A+SD + A+ T ELL+FI E + ++G
Sbjct: 4 IIAIDYGKKRTGIAVSDTLQMIANGL-------TTVPTHELLAFILDYVAKEPVERILVG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + FV ++ + +P + DER T+V A + +++ + +K R
Sbjct: 57 LPKQMNNEASENMKRIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLD--RISFL 155
K VD I+A +ILQ L+ R +FL
Sbjct: 117 KALVDEISATIILQTYLENKRFAFL 141
>gi|254414995|ref|ZP_05028758.1| conserved hypothetical protein TIGR00250 [Microcoleus
chthonoplastes PCC 7420]
gi|196178142|gb|EDX73143.1| conserved hypothetical protein TIGR00250 [Microcoleus
chthonoplastes PCC 7420]
Length = 136
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G+KRIG+A D A + R Q + + ++ ++GLP +MN
Sbjct: 2 GLDVGSKRIGVAGCDGTGLIATGLTTIKRTSFEQDVSQFRELVEQRDVQVLVVGLPYSMN 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ G + + + + + +P + DERLT+ A+Q+L +S + +D A
Sbjct: 62 GTLGFQARQVQKYARRL-SAALQLPVEYVDERLTSFEAEQLLHAEKLSPSRHKALIDRKA 120
Query: 141 AALILQEVLD 150
AA+ILQ+ LD
Sbjct: 121 AAIILQQWLD 130
>gi|323669743|emb|CBJ94867.1| conserved hypothetical protein [Salmonella bongori]
gi|327412913|emb|CAX67927.1| conserved hypothetical protein [Salmonella bongori]
Length = 138
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+AI A P P L + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAIGQRITGTARPLPALKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARAGLFEQGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|145224344|ref|YP_001135022.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK]
gi|315444676|ref|YP_004077555.1| hypothetical protein Mspyr1_31030 [Mycobacterium sp. Spyr1]
gi|145216830|gb|ABP46234.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK]
gi|315262979|gb|ADT99720.1| conserved hypothetical protein TIGR00250 [Mycobacterium sp. Spyr1]
Length = 175
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
ID+G+ RIG+A+SDP A P + R + + L L+ + E A +IGLP +
Sbjct: 30 GIDVGSVRIGVAVSDPDAVLATPVETVTRDRRSGRHLRRLTTLVGEYEAVEVVIGLPRTL 89
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G + R VP DER TTV+AQ+ L + V + + +D
Sbjct: 90 GNRAGSSAQDATEVADQLAARIAPVPVRLADERFTTVTAQRELREAGVRARGQKSMIDQA 149
Query: 140 AAALILQEVLDR 151
AA ILQ LD+
Sbjct: 150 AAVGILQNWLDQ 161
>gi|313668473|ref|YP_004048757.1| hypothetical protein NLA_11710 [Neisseria lactamica ST-640]
gi|313005935|emb|CBN87392.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 151
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
LP++ +G+E H +R F + R +P V+W DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAEGLLSEAQVFGKKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D +AA ILQ + S
Sbjct: 123 SVLDQVAAQAILQSFFEGGS 142
>gi|296314469|ref|ZP_06864410.1| putative Holliday junction resolvase [Neisseria polysaccharea ATCC
43768]
gi|296838766|gb|EFH22704.1| putative Holliday junction resolvase [Neisseria polysaccharea ATCC
43768]
Length = 151
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
LP++ +G+E H +R F + R +P V+W DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAEGLLSEAQVFGKKRK 122
Query: 134 QKVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 123 SVLDQVAAQAILQSFFE 139
>gi|213963251|ref|ZP_03391508.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
gi|213954113|gb|EEB65438.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
Length = 136
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 7/134 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
I +ID GTKR G+A++DP + A + T T L L + T E + F+IG P
Sbjct: 3 ILAIDYGTKRTGIAVTDPLQIIASGLCTVE----TPTLLAFLKQYTTEEAVEGFVIGQPK 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
+N + + F+ + +P DER T+ A Q +ID + +K+R K
Sbjct: 59 RLNNEDSSVETHIQQFITQLQKEFPSIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKAL 118
Query: 136 VDSIAAALILQEVL 149
+D I+A +ILQE L
Sbjct: 119 IDEISATIILQEFL 132
>gi|294649066|ref|ZP_06726511.1| Holliday junction resolvase-like protein [Acinetobacter
haemolyticus ATCC 19194]
gi|292825051|gb|EFF83809.1| Holliday junction resolvase-like protein [Acinetobacter
haemolyticus ATCC 19194]
Length = 147
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L P Q I + D GT+++G+AI A+P P K +LL + FI
Sbjct: 4 LNPPQSIMAFDFGTQKMGMAIGQSSIESANPLPLFNMKDGIPDWNQLLKIVKEWQPNLFI 63
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+ SE R F + + ++ DERLTT A++ L + +
Sbjct: 64 VGLPLNMDDSESELSARARKFARRLRHQTNISTWMV-DERLTTREAREELEFYQSKGQAK 122
Query: 133 IQKVDSIAAALILQ 146
DS AAAL++Q
Sbjct: 123 RLSADSFAAALLIQ 136
>gi|125527821|gb|EAY75935.1| hypothetical protein OsI_03854 [Oryza sativa Indica Group]
Length = 180
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78
+D+G+K +GLA+SD R A P L R K ++ A + ++ ++ ++A F++G P N
Sbjct: 26 GLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNISLMADDFVTLVSKYSLAGFVVGYPFN 85
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTT--VSAQQILIDMNVSRKKRIQ 134
+ G P R V + + + +WDE T+ + + +L + + +
Sbjct: 86 LQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDENFTSKVMCVEALLHPLKLHDPVETK 145
Query: 135 KV-DSIAAALILQEVLDRIS 153
+ D AA ILQ LD ++
Sbjct: 146 TMTDKFAAVCILQRYLDNMN 165
>gi|262374013|ref|ZP_06067290.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262311024|gb|EEY92111.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 147
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++ +Q I + D GT+++G+AI A+P P + K +LL + F+
Sbjct: 4 IQTSQSIMAFDFGTQKMGIAIGQSAIESANPLPLFIMKDGIPDWNQLLKLVKEWQPNLFL 63
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+ SE R F + + ++ DERLTT A++ L + +
Sbjct: 64 VGLPLNMDDSESELSARARKFARRLRHQTNIQTWMV-DERLTTREAREELESYQSKGQAK 122
Query: 133 IQKVDSIAAALILQ 146
DS AAAL++Q
Sbjct: 123 RLSADSFAAALLIQ 136
>gi|15829027|ref|NP_326387.1| hypothetical protein MYPU_5560 [Mycoplasma pulmonis UAB CTIP]
gi|32130058|sp|Q98Q13|RUVX_MYCPU RecName: Full=Putative Holliday junction resolvase
gi|14089971|emb|CAC13729.1| conserved hypothetical protein [Mycoplasma pulmonis]
Length = 146
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 66/136 (48%), Gaps = 10/136 (7%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++DLGTK G AISDP FA P KKV +L + I+G
Sbjct: 9 ALDLGTKSCGFAISDPISNSFAIPLENFFFEENNFKKVIN---KLKHYEKKYEFDTIILG 65
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
PL M G+ R F ++ + V DERL+TV A+ +L + N+S+ K +
Sbjct: 66 YPLRMTGTRSERSIMVEEF-EKLLRKTFSQRIVLVDERLSTVKAKAMLKETNISQSKIKE 124
Query: 135 KVDSIAAALILQEVLD 150
K DS+AAAL+L L+
Sbjct: 125 KKDSMAAALLLNYYLN 140
>gi|125572132|gb|EAZ13647.1| hypothetical protein OsJ_03564 [Oryza sativa Japonica Group]
Length = 180
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78
+D+G+K +GLA+SD R A P L R K ++ A + ++ ++ ++A F++G P N
Sbjct: 26 GLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNISLMADDFVTLVSKYSLAGFVVGYPFN 85
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTT--VSAQQILIDMNVSRKKRIQ 134
+ G P R V + + + +WDE T+ + + +L + + +
Sbjct: 86 LQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDENFTSKVMCVEALLHPLKLHDPVETK 145
Query: 135 KV-DSIAAALILQEVLDRIS 153
+ D AA ILQ LD ++
Sbjct: 146 TMTDKFAAVCILQRYLDNMN 165
>gi|198242309|ref|YP_002217072.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205354020|ref|YP_002227821.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207858358|ref|YP_002245009.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|226731648|sp|B5FUW0|RUVX_SALDC RecName: Full=Putative Holliday junction resolvase
gi|226731649|sp|B5QY73|RUVX_SALEP RecName: Full=Putative Holliday junction resolvase
gi|226731650|sp|B5RE57|RUVX_SALG2 RecName: Full=Putative Holliday junction resolvase
gi|197936825|gb|ACH74158.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205273801|emb|CAR38796.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206710161|emb|CAR34517.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326624844|gb|EGE31189.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326629133|gb|EGE35476.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 138
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+AI A P P + + T + + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWMLIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|152992044|ref|YP_001357765.1| Holliday junction resolvase-like protein [Sulfurovum sp. NBC37-1]
gi|167016516|sp|A6Q7E9|RUVX_SULNB RecName: Full=Putative Holliday junction resolvase
gi|151423905|dbj|BAF71408.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 128
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+A+ID+G KRIG AI GR P+ ++RK Q A +++SF+ I ++GLP
Sbjct: 3 LAAIDVGLKRIGTAICLDGR-IVMPQNAILRKNRNQAAHDVVSFLEEWEIEKLVVGLPKG 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ SE R H + ++ +P V+ DE+ ++ A+++ R K+ K+DS
Sbjct: 62 GSSSE----EMERRIQHFVSLLELDIPVVYQDEQGSSFEAKEMT--QGQFRHKKDGKIDS 115
Query: 139 IAAALILQEVL 149
IAA +IL+ L
Sbjct: 116 IAAKIILERHL 126
>gi|153808040|ref|ZP_01960708.1| hypothetical protein BACCAC_02326 [Bacteroides caccae ATCC 43185]
gi|149129649|gb|EDM20863.1| hypothetical protein BACCAC_02326 [Bacteroides caccae ATCC 43185]
Length = 138
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
I +ID G KR G+A+SD + A+ T ELL+FI E + I+G
Sbjct: 4 IVAIDYGRKRTGIAVSDTMQLIAN-------GLTTVPTHELLNFIGDYIAKEPVERIIVG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + + FV ++ R +P + DER T+V A + + + + +K R
Sbjct: 57 LPRQMNNEVSENMKNIEPFVRSLKKRFPDIPVEYVDERFTSVLAHRTMQEAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLDRISF 154
K VD I+A +ILQ L+ F
Sbjct: 117 KALVDEISATIILQTYLESKRF 138
>gi|319902633|ref|YP_004162361.1| Holliday junction resolvase YqgF [Bacteroides helcogenes P 36-108]
gi|319417664|gb|ADV44775.1| Holliday junction resolvase YqgF [Bacteroides helcogenes P 36-108]
Length = 141
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A+SD + A+ L Q ++ ++ E + ++GLP
Sbjct: 4 IIAIDYGRKRTGIAVSDTLQMIANG---LTTVPTHQLLAFIIDYVAKEPVERILVGLPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN + + FV ++ ++ +P + DER T+V A + +++ + +K R K V
Sbjct: 61 MNNEVSENMRNIEPFVRSLRNKLPDMPIEYVDERFTSVLAHRTMLEAGLKKKDRQNKALV 120
Query: 137 DSIAAALILQEVLDRISF 154
D I+A +ILQ L+ F
Sbjct: 121 DEISATIILQTYLENKRF 138
>gi|313157066|gb|EFR56496.1| RNAse H domain protein, YqgF family [Alistipes sp. HGB5]
Length = 137
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITTENIAAFIIGLP 76
I +ID GTKR G+A+SDP R A + V LE L + E++ ++G P
Sbjct: 4 ILAIDYGTKRTGIAVSDPLRLIAGG-----LETVETKGLEAWLAKYFAAEDVTTIVVGKP 58
Query: 77 LNMNGSEGPRVHSTRAFVHNMID--RKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKR 132
M+G+ T FV + R+ Y VF+DER T+V A + +++ + R R
Sbjct: 59 TQMDGTP----SETWRFVEPLAARLRRAYPDKEVVFYDERFTSVLAHRTMLESGIGRMAR 114
Query: 133 IQK--VDSIAAALILQEVLD 150
K VD I+A +ILQ ++
Sbjct: 115 RNKALVDKISATIILQSYME 134
>gi|255529990|ref|YP_003090362.1| Holliday junction resolvase YqgF [Pedobacter heparinus DSM 2366]
gi|255342974|gb|ACU02300.1| Holliday junction resolvase YqgF [Pedobacter heparinus DSM 2366]
Length = 138
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 19 IASIDLGTKRIGLAISDP------GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
I + D GTKRIG+A++DP G HP+ + L ++ E + AF+
Sbjct: 4 ILAFDYGTKRIGIAVTDPLQIIATGLDTIHPKDIVEY---------LKKYLLAEQVEAFV 54
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
G P M+G+ + F + +P + DER T+ A Q ++ + ++ R
Sbjct: 55 FGDPKQMDGTPSESAQHVKGFAKTLKKTFPDIPQYWIDERFTSKLAHQAIMQSGLKKQDR 114
Query: 133 IQK--VDSIAAALILQEVLDR 151
K VD+I+A +ILQ +++
Sbjct: 115 KNKERVDTISATIILQYFMEQ 135
>gi|329961282|ref|ZP_08299448.1| RNAse H domain protein, YqgF family [Bacteroides fluxus YIT 12057]
gi|328531947|gb|EGF58764.1| RNAse H domain protein, YqgF family [Bacteroides fluxus YIT 12057]
Length = 141
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A+SD + A+ L Q +L ++ E + ++GLP
Sbjct: 4 IIAIDYGRKRTGIAVSDTLQMIANG---LTTVPTHQLLTFILDYVAKEPVERILVGLPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN + + FV ++ + +P + DER T+V A + +++ + +K R K V
Sbjct: 61 MNNEVSENMKNIEPFVRSLQKKLPDMPIEYVDERFTSVLAHRTMLEAGLKKKARQNKALV 120
Query: 137 DSIAAALILQEVLDRISF 154
D I+A +ILQ L+ F
Sbjct: 121 DEISATIILQTYLENRRF 138
>gi|261377526|ref|ZP_05982099.1| putative Holliday junction resolvase [Neisseria cinerea ATCC 14685]
gi|269146263|gb|EEZ72681.1| putative Holliday junction resolvase [Neisseria cinerea ATCC 14685]
Length = 151
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PQGTALAFDFGEARIGVAQGDTELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
LP++ +G+E H +R F + R +P V+W DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAEGLLSEAQVFGKKRK 122
Query: 134 QKVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 123 SVLDQVAAQAILQSFFE 139
>gi|57233582|ref|YP_180806.1| hypothetical protein DET0051 [Dehalococcoides ethenogenes 195]
gi|146325567|sp|Q3ZAE3|RUVX_DEHE1 RecName: Full=Putative Holliday junction resolvase
gi|57224030|gb|AAW39087.1| conserved hypothetical protein TIGR00250 [Dehalococcoides
ethenogenes 195]
Length = 133
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Query: 24 LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
+G K IG+A+SDP R A P L R +T + + + T +IGLP+++NG+
Sbjct: 1 MGDKWIGVALSDPLRILASPLVILRRDDDAKTVENIEALVKTHQPDLLVIGLPVSLNGTI 60
Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
GP+ +AF ++ + + +F DER +T A++ + D + + + D+ AAA+
Sbjct: 61 GPQAEKVKAF-SGLLSQSLNTEIIFRDERFSTDEARRKMNDS--GKNNKTVRDDAAAAAV 117
Query: 144 ILQEVLDRIS 153
ILQ+ LD +
Sbjct: 118 ILQDYLDETN 127
>gi|218288664|ref|ZP_03492941.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
LAA1]
gi|218241321|gb|EED08496.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
LAA1]
Length = 105
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
E + ++G PL+M+G F M+ + +P +DERLTTVSA++ILI+
Sbjct: 8 EEVGRIVVGRPLHMSGQPSEMTSRAEKFAR-MLAARTGLPVDLYDERLTTVSAERILIEQ 66
Query: 126 NVSRKKRIQKVDSIAAALILQEVL 149
NV R++R VD+ AA ++L++ L
Sbjct: 67 NVRRRERRATVDAAAAQVLLEDYL 90
>gi|282896769|ref|ZP_06304775.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9]
gi|281198178|gb|EFA73068.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9]
Length = 158
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G+KR+G+A D A + RK + E+ + + ++G+P + +
Sbjct: 14 GLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDLQEIQGLVEKRRVQILVVGIPYSRD 73
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS G + + F N + + + +P + DERLT+ A+Q+L+ N S VD A
Sbjct: 74 GSIGEQARRIQKFA-NRLAKTLGLPVEYVDERLTSFQAEQMLLAENRSPSYNRGLVDRKA 132
Query: 141 AALILQEVLD 150
A++ILQ+ LD
Sbjct: 133 ASIILQQWLD 142
>gi|120403626|ref|YP_953455.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1]
gi|119956444|gb|ABM13449.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1]
Length = 175
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+GT RIG+A+SDP A P + R K+ T+ L + + + ++GLP +
Sbjct: 30 GVDVGTVRIGVAVSDPDAILATPVETVPRDKRGTKHVRRLAALVDEYQVVEVVVGLPRTL 89
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G + R VP DER TTV+AQ+ L + V + + +D
Sbjct: 90 ADRAGSSAQDATEVAEVLAGRIAPVPVRLADERFTTVTAQRALREAGVRARGQRSVIDQA 149
Query: 140 AAALILQEVLDR 151
AA ILQ LD+
Sbjct: 150 AAVGILQNWLDQ 161
>gi|158333266|ref|YP_001514438.1| Holliday junction resolvase-like protein [Acaryochloris marina
MBIC11017]
gi|189046084|sp|B0C512|RUVX_ACAM1 RecName: Full=Putative Holliday junction resolvase
gi|158303507|gb|ABW25124.1| holliday junction resolvase, putative [Acaryochloris marina
MBIC11017]
Length = 144
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLG +RIG+A D A + R T+ L + + ++GLP M
Sbjct: 8 GLDLGHRRIGVAGCDGTGLIATGLTTIRRTSFTKDMEILRQIVVDRQVKTLVVGLPYTMK 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G G + T+ I + + +P F DERLT+ A+ ++ + ++ ++ +D A
Sbjct: 68 GEVGTQAQKTQKLAKR-IAKALDLPLDFIDERLTSHEAESMMREQRINPAEQKGMIDRKA 126
Query: 141 AALILQEVLDRISFLESS 158
AALILQ LD+ +L S+
Sbjct: 127 AALILQRWLDQKPWLSST 144
>gi|270285241|ref|ZP_06194635.1| Holliday junction resolvase-like protein [Chlamydia muridarum Nigg]
gi|270289260|ref|ZP_06195562.1| Holliday junction resolvase-like protein [Chlamydia muridarum
Weiss]
gi|301336637|ref|ZP_07224839.1| Holliday junction resolvase-like protein [Chlamydia muridarum
MopnTet14]
Length = 145
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAF 71
+K + +D G KRIGLA + P + + TA L++ I +
Sbjct: 1 MKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAVTTV 60
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRK 130
+ G PL M S V S + ++ + + WDERL++ A+++L D +SRK
Sbjct: 61 VFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGLSRK 120
Query: 131 KRIQKVDSIAAALILQEVLD 150
+R DS+AA LIL LD
Sbjct: 121 QRKNSSDSLAATLILSSFLD 140
>gi|302533384|ref|ZP_07285726.1| Holliday junction resolvase YqgF [Streptomyces sp. C]
gi|302442279|gb|EFL14095.1| Holliday junction resolvase YqgF [Streptomyces sp. C]
Length = 158
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DP A P + + + L + ++GLP +++
Sbjct: 12 AIDVGDARIGVASCDPDGVLATPVETVPGRDIPFAHRRLRQLVEEYEPLEVVVGLPRSLS 71
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP RAF + + V DER+TTV+A Q L + KK +D A
Sbjct: 72 GREGPAAAKVRAFANELAKGIKPVTVRLVDERMTTVTAAQGLRASGRNAKKGRSVIDQAA 131
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 132 AVVILQNALE 141
>gi|190571530|ref|YP_001975888.1| putative holliday junction resolvase [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
gi|190357802|emb|CAQ55258.1| putative holliday junction resolvase [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
Length = 155
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
++ +KS+ ++ I +D+G K+IG+A SD + A R+ +++ L L+ + E
Sbjct: 7 DEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKD-LGYLNRVLKE 65
Query: 67 NIA-AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL--I 123
N A + +IGLP ++ E F + +I +K V DE L+T A L
Sbjct: 66 NEAGSMVIGLPFTIDEQETEWCKVIIQFANKII-KKCKVHIYLQDESLSTSLATHALKIT 124
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
+++++ K+I D IAA +ILQ LD+I+ ++
Sbjct: 125 GISITKSKKID--DKIAACIILQRTLDKINAIK 155
>gi|296170782|ref|ZP_06852354.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894597|gb|EFG74334.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 169
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 57/131 (43%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G+ RIG+A SDP A P + R + + L ++GLP +
Sbjct: 26 GVDVGSVRIGVACSDPDGILATPVETVRRDRSGKHVRRLAELAAELGAVEVVVGLPRTLA 85
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GP + R P DERLTTVSAQ+ L V K++ +D A
Sbjct: 86 DRTGPSALDAMELADTLAQRLAPTPVRLADERLTTVSAQRSLRAAGVRAKEQRAVIDQAA 145
Query: 141 AALILQEVLDR 151
A ILQ LD+
Sbjct: 146 AVAILQSWLDQ 156
>gi|193213626|ref|YP_001999579.1| Holliday junction resolvase YqgF [Chlorobaculum parvum NCIB 8327]
gi|193087103|gb|ACF12379.1| Holliday junction resolvase YqgF [Chlorobaculum parvum NCIB 8327]
Length = 141
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENIAAFIIGLPL 77
I ID GTKRIG+A SDP FA P V + L LS I E I ++G PL
Sbjct: 8 IIGIDFGTKRIGVAKSDPLGMFAQP----VGTFDMEGLLGALSKIRNEEGIERIVVGYPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
+ G E F + VP DE ++ SA ++L SRKKR +K
Sbjct: 64 SDKGEENRMTSVVDRFAEELRVALPEVPVETIDEYRSSRSAMKLLAGSGASRKKRNEKGR 123
Query: 136 VDSIAAALILQEVLD 150
+D+ AA LILQ LD
Sbjct: 124 LDTAAACLILQSWLD 138
>gi|190149502|ref|YP_001968027.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307262821|ref|ZP_07544446.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|226725478|sp|B3H073|RUVX_ACTP7 RecName: Full=Putative Holliday junction resolvase
gi|189914633|gb|ACE60885.1| putative Holliday junction resolvase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306871836|gb|EFN03555.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 137
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GT IG A+ A P + ++ I ++GLPLN
Sbjct: 5 ILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E P + F N ++ + +P DERLTTVSA+ + + + + KVDS
Sbjct: 65 MDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKVDS 123
Query: 139 IAAALILQEVLD 150
I+A LIL+ +
Sbjct: 124 ISACLILESWFE 135
>gi|307249444|ref|ZP_07531433.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858518|gb|EFM90585.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 137
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GT IG ++ A P + ++ I ++GLPLN
Sbjct: 5 ILAFDFGTYSIGCSVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSE P + F N ++ + +P DERLTTVSA+ + + + + KVDS
Sbjct: 65 MDGSEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKVDS 123
Query: 139 IAAALILQEVLD 150
I+A LIL+ +
Sbjct: 124 ISACLILESWFE 135
>gi|192359483|ref|YP_001980608.1| hypothetical protein CJA_0084 [Cellvibrio japonicus Ueda107]
gi|190685648|gb|ACE83326.1| conserved hypothetical protein TIGR00250 [Cellvibrio japonicus
Ueda107]
Length = 143
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A R A P L + E+ + + T ++GLPLNM+
Sbjct: 7 AFDYGTKNIGVATGQTIIRSASSLPGLRARDGVPDWNEIEALLKTWQPDLVLVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
GSE R F + R V V V DERL++ A+ +++ SR R VDSI
Sbjct: 67 GSESELSARARKFANRTQGRFGVKVEMV--DERLSSFEAKGEVMERGGSRDYRHNPVDSI 124
Query: 140 AAALILQEVLDR 151
AA LIL+ L+R
Sbjct: 125 AARLILEAWLER 136
>gi|59801001|ref|YP_207713.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae FA
1090]
gi|293398863|ref|ZP_06643028.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
gi|62900896|sp|Q5F936|RUVX_NEIG1 RecName: Full=Putative Holliday junction resolvase
gi|59717896|gb|AAW89301.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|291610277|gb|EFF39387.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
Length = 151
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHADGTEHEMTHLSRKFGRRLNGR-FNLPVYWVDERLSSVCAESLLSEAQVLGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL L+
Sbjct: 124 VLDQVAAQAILHGFLE 139
>gi|322514742|ref|ZP_08067768.1| crossover junction endodeoxyribonuclease [Actinobacillus ureae ATCC
25976]
gi|322119337|gb|EFX91453.1| crossover junction endodeoxyribonuclease [Actinobacillus ureae ATCC
25976]
Length = 137
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 31/147 (21%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
I + D GT IG A+ + +T TA L SF + I +
Sbjct: 5 ILAFDFGTYSIGCAVG---------------QDITGTAQGLSSFKAQDGIPNWDQIEKVI 49
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLPLNM+G+E P + F N ++ + +P DERLTTVSA+ +
Sbjct: 50 QEWLPERLVVGLPLNMDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVSAKAEIF 108
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + + KVDSI+A LIL+ +
Sbjct: 109 ERGGYKALKKDKVDSISACLILESWFE 135
>gi|218887440|ref|YP_002436761.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|226725512|sp|B8DIJ5|RUVX_DESVM RecName: Full=Putative Holliday junction resolvase
gi|218758394|gb|ACL09293.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 142
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GTKR G+A SD G A PR +V + ELL+ E A+++GLPL +
Sbjct: 5 GIDYGTKRTGVAASDTGGSMAFPRRTIVMTTRDRFFAELLAVAEEERAEAYVVGLPLLHD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G++ R FV + R+ +P +E L++ A+ L D +S + VD A
Sbjct: 65 GTDTLTTRQVRNFVERL-KRRTTLPVYLMEEFLSSYEAEDDLRDAGLSGRALEAVVDQQA 123
Query: 141 AALILQEVLD 150
A ILQ L+
Sbjct: 124 AVRILQSFLN 133
>gi|218130012|ref|ZP_03458816.1| hypothetical protein BACEGG_01595 [Bacteroides eggerthii DSM 20697]
gi|217987815|gb|EEC54141.1| hypothetical protein BACEGG_01595 [Bacteroides eggerthii DSM 20697]
Length = 141
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
I +ID G KR G+A+SD + A+ T ELL+FI E + ++G
Sbjct: 4 IIAIDYGKKRTGIAVSDTLQMIANGL-------TTVPTHELLAFILDYVAKEPVERILVG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + FV ++ + +P + DER T+V A + +++ + +K R
Sbjct: 57 LPKQMNNEASENMKRIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLDRISF 154
K VD I+A +ILQ L+ F
Sbjct: 117 KALVDEISATIILQTYLENKRF 138
>gi|88856252|ref|ZP_01130912.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1]
gi|88814571|gb|EAR24433.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1]
Length = 153
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS--FITTENIAAFIIGLPLNM 79
ID+G R+G+A SDP A P + R + + LL+ F E ++GLP+ +
Sbjct: 9 IDVGKVRVGVARSDPHGMIATPVETVQRASSSIKRILLLAVEFEAVE----LVVGLPIAL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G + P RAF + D + DER+TT+SAQ L + K VD +
Sbjct: 65 SGRDTPSTADARAFAQELADGS-DITVRLVDERMTTMSAQSALRASGRTTKNSRSVVDQV 123
Query: 140 AAALILQEVLD 150
AA +ILQ LD
Sbjct: 124 AAVIILQHALD 134
>gi|161506351|ref|YP_001573463.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|189046104|sp|A9MQS7|RUVX_SALAR RecName: Full=Putative Holliday junction resolvase
gi|160867698|gb|ABX24321.1| hypothetical protein SARI_04548 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 138
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+AI A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|21672923|ref|NP_660988.1| hypothetical protein CT0082 [Chlorobium tepidum TLS]
gi|32130037|sp|Q8KG86|RUVX_CHLTE RecName: Full=Putative Holliday junction resolvase
gi|21645979|gb|AAM71330.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 142
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENIAA 70
S ++ I ID GTKRIG+A+SDP R FA P + + + +LS + E I
Sbjct: 2 SSSSHKRIIGIDFGTKRIGVALSDPLRMFAQPLGTFDMEGLVR----VLSRVRDDEGIEL 57
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++G P++ G E FV + + +DE ++ +A +IL SRK
Sbjct: 58 VVVGYPMSDKGEENRMTGVIDRFVAELRESFPGTLIETFDEHRSSRTAMKILAASGSSRK 117
Query: 131 KRIQK--VDSIAAALILQEVLD 150
KR +K +D+ AA LILQ LD
Sbjct: 118 KRNEKGRLDTAAACLILQGYLD 139
>gi|282898802|ref|ZP_06306789.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii
CS-505]
gi|281196329|gb|EFA71239.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii
CS-505]
Length = 154
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G+KR+G+A D A + RK + E+ + + ++G+P + +
Sbjct: 14 GLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDLQEIRGLVEKRRVQILVVGIPYSGD 73
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS G + + F N + + + +P DERLT+ A+Q+L+ N S VD A
Sbjct: 74 GSMGEQARRIQKFA-NRLAKALGLPLEHVDERLTSFQAEQMLLAENRSPSYNKGLVDRKA 132
Query: 141 AALILQEVLD 150
A++ILQ+ LD
Sbjct: 133 ASIILQQWLD 142
>gi|300175399|emb|CBK20710.2| Holliday junction resolvase YqgF [Blastocystis hominis]
Length = 167
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 20/164 (12%)
Query: 1 MSILLIEDL------VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ 54
M++L ++ L V ++P + +D+GT +G+A+SDP A P+ L+R +
Sbjct: 1 MAVLTVKQLQSLYSKVAHIRPR--LLGLDVGTTFVGVALSDPTLTLALPQGTLLRTDCLR 58
Query: 55 --TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDE 111
+ L+ + AF++GLPL +G E + + F+H + ++ +P VF DE
Sbjct: 59 PFKSNPLIKLVQQYRTFAFVVGLPLLESGEESIQCEDVKLFIHEFWNHTEMPMPVVFEDE 118
Query: 112 RLTTVSAQQILIDMNVSRKKR-----IQKVDSIAAALILQEVLD 150
+T Q+ +D +KKR ++K D AAA+ILQ LD
Sbjct: 119 WGST----QMAMDDYRYQKKRDWNRGLRKKDENAAAIILQSFLD 158
>gi|270307497|ref|YP_003329555.1| Holliday junction resolvase [Dehalococcoides sp. VS]
gi|270153389|gb|ACZ61227.1| Holliday junction resolvase [Dehalococcoides sp. VS]
Length = 133
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Query: 24 LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
+G K IG+A+SDP R A P L R +T + + + T ++GLP+++NG+
Sbjct: 1 MGDKWIGVALSDPLRILASPLVILRRDDDGKTVENIEALVKTHQPDLLVVGLPVSLNGTI 60
Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
GP+ +AF ++ + + VF DER +T A++ + D + + + D+ AAA+
Sbjct: 61 GPQAEKVKAF-SGLLSQSLDTEIVFRDERFSTDEARRKMNDS--GKNNKTVRDDAAAAAV 117
Query: 144 ILQEVLDRIS 153
ILQ+ LD +
Sbjct: 118 ILQDYLDETN 127
>gi|56461319|ref|YP_156600.1| Holliday junction resolvase-like protein [Idiomarina loihiensis
L2TR]
gi|62900918|sp|Q5QVM3|RUVX_IDILO RecName: Full=Putative Holliday junction resolvase
gi|56180329|gb|AAV83051.1| Predicted endonuclease [Idiomarina loihiensis L2TR]
Length = 144
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK IG+A+ A P + K+ + ++GLPLN
Sbjct: 4 VIGFDFGTKSIGVAVGQTITATASPLAAITAKEGIPDWQLIEKLFAEWQPEQLVVGLPLN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E P + F N + + +P F DERLT+ SA++ L RK + VDS
Sbjct: 64 MDGTEQPLTQKAKKF-GNRLHGRFGLPVAFQDERLTSTSARESLFAEGGFRKLKKGAVDS 122
Query: 139 IAAALILQEVLD 150
AA +I+++ ++
Sbjct: 123 QAALIIVEDFMN 134
>gi|237729880|ref|ZP_04560361.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226908486|gb|EEH94404.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 138
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 7 SFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWSLIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVVILESYFEQ 136
>gi|283835290|ref|ZP_06355031.1| putative Holliday junction resolvase [Citrobacter youngae ATCC
29220]
gi|291068448|gb|EFE06557.1| putative Holliday junction resolvase [Citrobacter youngae ATCC
29220]
Length = 138
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 7 SFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|125532910|gb|EAY79475.1| hypothetical protein OsI_34603 [Oryza sativa Indica Group]
Length = 237
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R G+A+ GR PRP V K + + L LL + I+GLP++
Sbjct: 78 GVDLGEARTGVAV---GRGITLPRPLTVLKLRGQKLELMLLDIAQQQEADELIVGLPVSA 134
Query: 80 NGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+GSE P+ + R+ V + DR + V DE TT+ A + +I V R R K
Sbjct: 135 DGSETPQSNKVRSVVGRLAVQAADRGLRV--YLQDEHGTTIDALEFMISRGVKRSARDVK 192
Query: 136 VDSIAAALILQ 146
D+ +A +IL+
Sbjct: 193 SDAYSAMMILE 203
>gi|332885375|gb|EGK05624.1| Holliday junction resolvase [Dysgonomonas mossii DSM 22836]
Length = 141
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLNM 79
++D GTKR G+A+SD + A+ + T T L+ L +++ E++ I+GLP M
Sbjct: 6 ALDYGTKRTGIAVSDTLKIIANGLTTVP----THTLLDYLKTYLQKEDVERIIVGLPKQM 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137
N + R FV + + ++DER T+ A + ++D + + R K VD
Sbjct: 62 NNEYSENMKHIRPFVKKLQSLYPDMQIEYYDERFTSALAHKTMLDAGLKKTDRQNKSLVD 121
Query: 138 SIAAALILQEVLDRI 152
I+A +ILQ ++ +
Sbjct: 122 EISATIILQGYMESL 136
>gi|296129665|ref|YP_003636915.1| Holliday junction resolvase YqgF [Cellulomonas flavigena DSM 20109]
gi|296021480|gb|ADG74716.1| Holliday junction resolvase YqgF [Cellulomonas flavigena DSM 20109]
Length = 190
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFI--TTENIAAFI-IGL 75
++D+GT R+G+A SDP A P L R K + TA ++ E A + +GL
Sbjct: 20 AVDVGTVRVGVASSDPDGLLATPVETLARAASKPSSTAADVARIADEARERRAEVVYVGL 79
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +++G+EG RA+ + V DER++TVSA L S ++ +
Sbjct: 80 PRHLSGAEGSSAGVARAYAVALAHAVRPVQVRLVDERMSTVSAHHALQAAGRSGRRHREV 139
Query: 136 VDSIAAALILQEVLD 150
VD AA +ILQ LD
Sbjct: 140 VDQAAAVVILQHALD 154
>gi|317507137|ref|ZP_07964896.1| hypothetical protein HMPREF9336_01267 [Segniliparus rugosus ATCC
BAA-974]
gi|316254558|gb|EFV13869.1| hypothetical protein HMPREF9336_01267 [Segniliparus rugosus ATCC
BAA-974]
Length = 164
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 66/148 (44%), Gaps = 12/148 (8%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-------KVTQTALELLSFITTEN 67
P P +DLG RIGLAISD G FA P L R + L +
Sbjct: 4 PLGPRLGVDLGQARIGLAISDQGGVFAAPLMALERATGKPPKLALADDLAALAGVVEEHR 63
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
IA ++G P N+ G + FV + VP DER+TT+ A + L + V
Sbjct: 64 IALVVVGWPRNLKGEAARAARTAEEFVERLRAAVAPVPVRLVDERVTTLLAHRQLREAGV 123
Query: 128 SRKKRIQK-----VDSIAAALILQEVLD 150
S K+ ++K VD +AA ILQ LD
Sbjct: 124 SGKRLVRKGQRGVVDQLAATAILQGWLD 151
>gi|189461817|ref|ZP_03010602.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136]
gi|189431411|gb|EDV00396.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136]
Length = 138
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A+SDP + A L Q LL++I E + IIG P
Sbjct: 4 ILAIDYGRKRTGIAVSDPLQIIASG---LTTVPTHQLMDFLLNYIKQEQVECIIIGHPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
+N + + + F++ + +P DER T+V A Q ++ + +K R K V
Sbjct: 61 LNNEDSENMKNIIPFINRLKKILPDMPVQLVDERFTSVLAHQTMLAGGLKKKDRQNKALV 120
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D I+A +ILQ S+LES +
Sbjct: 121 DEISATIILQ------SYLESRR 137
>gi|309378826|emb|CBX22531.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 142
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G RIG+A D +HP + + + + F++GLP++ +
Sbjct: 2 AFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVGLPVHTD 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G+E H +R F + R +P V+W DERL++V A+ +L + V KKR +D +
Sbjct: 62 GTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAESLLSEARVFGKKRKSVLDQV 119
Query: 140 AAALILQEVLD 150
AA ILQ +
Sbjct: 120 AAQAILQSFFE 130
>gi|296394105|ref|YP_003658989.1| Holliday junction resolvase YqgF [Segniliparus rotundus DSM 44985]
gi|296181252|gb|ADG98158.1| Holliday junction resolvase YqgF [Segniliparus rotundus DSM 44985]
Length = 200
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR------KKVTQTALELLSFITTEN-IAA 70
P IDLG RIGLAISDP FA P L R K L L+ + E+ IA
Sbjct: 43 PRLGIDLGQARIGLAISDPDAVFAAPFAALERATGKPPKLALAEDLAALAEVVREHRIAL 102
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++G P N+ G + FV + + VP DER+TT+ A + L + VS K
Sbjct: 103 VVVGWPRNLKGEAATAARTAEEFVRRLGEVIAPVPVRLVDERVTTLLAHRQLREAGVSGK 162
Query: 131 KRIQK-----VDSIAAALILQEVLD 150
+ ++K VD +AA ILQ LD
Sbjct: 163 RLVRKGQRGVVDQLAATAILQGWLD 187
>gi|317503056|ref|ZP_07961135.1| putative Holliday junction resolvase [Prevotella salivae DSM 15606]
gi|315665829|gb|EFV05417.1| putative Holliday junction resolvase [Prevotella salivae DSM 15606]
Length = 146
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
I SID G KR GLA++D + A+ + T ++ L +I E + +IG P+
Sbjct: 4 ILSIDYGKKRTGLAVTDSLQIIANGLATVS----TSILIDFLKDYIAKETVELIVIGRPV 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
+G+ + FV+ VP ++DER T+V A ++++D + +K R ++
Sbjct: 60 KPDGTPSENLARVEQFVNRWRKLMPKVPIEYYDERFTSVIAHKVVLDSGIKKKARRERKG 119
Query: 136 -VDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 120 LVDEISATIILQDFM 134
>gi|118466058|ref|YP_882612.1| Holliday junction resolvase-like protein [Mycobacterium avium 104]
gi|118167345|gb|ABK68242.1| conserved hypothetical protein [Mycobacterium avium 104]
Length = 165
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 2/142 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID+G+ RIG+A SDP A P + R + + L + +T ++GLP +
Sbjct: 24 GIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVVGLPRTLA 83
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G + R P DERLTTV+AQ+ L V K++ +D A
Sbjct: 84 DRTGASALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQRAVIDQAA 143
Query: 141 AALILQEVLD--RISFLESSKG 160
A ILQ LD R + E+ G
Sbjct: 144 AVAILQSWLDQRRAAVREAGDG 165
>gi|115483352|ref|NP_001065346.1| Os10g0555200 [Oryza sativa Japonica Group]
gi|13194228|gb|AAK15446.1|AC037426_8 hypothetical protein [Oryza sativa Japonica Group]
gi|31433450|gb|AAP54963.1| expressed protein [Oryza sativa Japonica Group]
gi|113639878|dbj|BAF27183.1| Os10g0555200 [Oryza sativa Japonica Group]
gi|125575650|gb|EAZ16934.1| hypothetical protein OsJ_32416 [Oryza sativa Japonica Group]
gi|215697176|dbj|BAG91170.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 237
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R G+A+ GR PRP V K + + L LL + I+GLP++
Sbjct: 78 GVDLGEARTGVAV---GRGITLPRPLTVLKLRGQKLELMLLDIAQQQEADELIVGLPVSA 134
Query: 80 NGSEGPRVHSTRAFVHNM----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+GSE P+ + R+ V + DR + V DE TT+ A + +I V R R K
Sbjct: 135 DGSETPQSNKVRSVVGRLAVQAADRGLRV--YLQDEYGTTIDALEFMISRGVKRSARDVK 192
Query: 136 VDSIAAALILQ 146
D+ +A +IL+
Sbjct: 193 SDAYSAMMILE 203
>gi|325270162|ref|ZP_08136769.1| Holliday junction resolvase [Prevotella multiformis DSM 16608]
gi|324987463|gb|EGC19439.1| Holliday junction resolvase [Prevotella multiformis DSM 16608]
Length = 139
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
I +ID G KR GLA++DP R A+ + T + L+ +I E + +IG P+
Sbjct: 4 ILAIDYGKKRTGLAVTDPLRIIANG----LATVATSGLFDFLTQYIAEEPVDRLVIGRPV 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
+G + FV+ +P ++DER T+V A Q LI V +K R +
Sbjct: 60 QPSGEPSENLVRVEQFVNRWRKAHPELPIDYYDERFTSVLAHQALIAGGVKKKTRRENKG 119
Query: 136 -VDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 120 LVDEISATIILQDYM 134
>gi|256391574|ref|YP_003113138.1| Holliday junction resolvase-like protein [Catenulispora acidiphila
DSM 44928]
gi|256357800|gb|ACU71297.1| Holliday junction resolvase YqgF [Catenulispora acidiphila DSM
44928]
Length = 171
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
+D+GT RIG+A D A P V+ + + +L+ L+ + E A ++GLP ++
Sbjct: 22 GVDVGTVRIGVASCDRDGLLATPV-ETVKAEPRRASLDRLAALAAEYEAFEIVVGLPRSL 80
Query: 80 NGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G EGP RA+ +++ R P DERL+TV+A Q L V KK VD
Sbjct: 81 SGGEGPAAAKIRAYARDLVRRLGPGTPVRLVDERLSTVTATQGLRASGVKAKKGRSVVDQ 140
Query: 139 IAAALILQEVLD 150
AA +ILQ LD
Sbjct: 141 AAAVVILQNALD 152
>gi|227875428|ref|ZP_03993569.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35243]
gi|227843982|gb|EEJ54150.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35243]
Length = 145
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
+D+G R+G+A + A P L + EL SFI E A +GLP +NG
Sbjct: 1 MDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGLPRLLNG 60
Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
EG R++ + + +P DERL++V+A + L VS ++ + VD +AA
Sbjct: 61 KEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVAA 120
Query: 142 ALILQEVLD 150
IL++ ++
Sbjct: 121 QQILEQAIE 129
>gi|300723963|ref|YP_003713277.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC
19061]
gi|297630494|emb|CBJ91159.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC
19061]
Length = 139
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 31/151 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ I + D GT+ IG AI ++VT TA L +F E +
Sbjct: 3 NRTIIAFDFGTRSIGAAIG---------------QEVTGTARALSAFKANEGSPNWQLIE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I+GLPLNM+G+E P R F N + + V DERLTTV A+
Sbjct: 48 KLLKEWQPDLVIVGLPLNMDGTEQPVTAQARKFA-NRLHGRFGVQVALHDERLTTVEARS 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
L D + KVD+ +A +IL+ +R
Sbjct: 107 HLFDHGGYKALNKGKVDAASAVIILESWFER 137
>gi|239500946|ref|ZP_04660256.1| hypothetical protein AbauAB_01395 [Acinetobacter baumannii AB900]
Length = 146
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI A+P P V K +LL + FI+GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWNQLLKIVKEWQPDLFIVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + ++ DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFARRLRHQTNIETWMV-DERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQ 146
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQ 135
>gi|16766398|ref|NP_462013.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|167552011|ref|ZP_02345764.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167990376|ref|ZP_02571476.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|194442861|ref|YP_002042356.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|197265538|ref|ZP_03165612.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|200388976|ref|ZP_03215588.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204928137|ref|ZP_03219337.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|238909895|ref|ZP_04653732.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|32130052|sp|Q8ZM50|RUVX_SALTY RecName: Full=Putative Holliday junction resolvase
gi|226731652|sp|B4T5K4|RUVX_SALNS RecName: Full=Putative Holliday junction resolvase
gi|16421650|gb|AAL21972.1| putative endonuclease involved in recombination [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|194401524|gb|ACF61746.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|197243793|gb|EDY26413.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|199606074|gb|EDZ04619.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204322459|gb|EDZ07656.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205323262|gb|EDZ11101.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205331084|gb|EDZ17848.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|261248228|emb|CBG26065.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995262|gb|ACY90147.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301159652|emb|CBW19171.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312914119|dbj|BAJ38093.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|321225770|gb|EFX50824.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322613494|gb|EFY10435.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322621086|gb|EFY17944.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322624150|gb|EFY20984.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322628111|gb|EFY24900.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322633230|gb|EFY29972.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322636192|gb|EFY32900.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322639530|gb|EFY36218.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322647537|gb|EFY44026.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648721|gb|EFY45168.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322653776|gb|EFY50102.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657882|gb|EFY54150.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322663985|gb|EFY60184.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322669004|gb|EFY65155.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322673002|gb|EFY69109.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322678007|gb|EFY74070.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322681183|gb|EFY77216.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322687887|gb|EFY83854.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323131453|gb|ADX18883.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323194917|gb|EFZ80104.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323199621|gb|EFZ84711.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323202632|gb|EFZ87672.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323207881|gb|EFZ92827.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323212567|gb|EFZ97384.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323214950|gb|EFZ99698.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323222680|gb|EGA07045.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323225423|gb|EGA09655.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230562|gb|EGA14680.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323235087|gb|EGA19173.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323239126|gb|EGA23176.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323244516|gb|EGA28522.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323247131|gb|EGA31097.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323253386|gb|EGA37215.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323256307|gb|EGA40043.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323262517|gb|EGA46073.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323267387|gb|EGA50871.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323269209|gb|EGA52664.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|332989964|gb|AEF08947.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 138
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+AI A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|254383593|ref|ZP_04998943.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194342488|gb|EDX23454.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 158
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 60/130 (46%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID+G RIG+A DP A P + + V L + ++GLP +++
Sbjct: 12 AIDVGDARIGVASCDPDGVLATPVETVPGRDVPFAHRRLRQLVEEYEPLEVVVGLPRSLS 71
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G EGP RAF + V DER+TTV+A Q L + KK +D A
Sbjct: 72 GREGPAAVKVRAFAGELAKGIKPVTVRLVDERMTTVTAAQGLRASGKNAKKGRSVIDQAA 131
Query: 141 AALILQEVLD 150
A +ILQ L+
Sbjct: 132 AVVILQNALE 141
>gi|16761872|ref|NP_457489.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29143359|ref|NP_806701.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56415035|ref|YP_152110.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62181607|ref|YP_218024.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|161616061|ref|YP_001590026.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|168234352|ref|ZP_02659410.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168236165|ref|ZP_02661223.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168242900|ref|ZP_02667832.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168264457|ref|ZP_02686430.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168463716|ref|ZP_02697633.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168819873|ref|ZP_02831873.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194450224|ref|YP_002047085.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194469087|ref|ZP_03075071.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194734127|ref|YP_002116045.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197247485|ref|YP_002148011.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197363964|ref|YP_002143601.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|213027960|ref|ZP_03342407.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
gi|213163042|ref|ZP_03348752.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213420491|ref|ZP_03353557.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213424109|ref|ZP_03357002.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213580645|ref|ZP_03362471.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213648203|ref|ZP_03378256.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213850163|ref|ZP_03381061.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|224584890|ref|YP_002638689.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|289804300|ref|ZP_06534929.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
gi|289828650|ref|ZP_06546460.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|32130050|sp|Q8Z3V1|RUVX_SALTI RecName: Full=Putative Holliday junction resolvase
gi|62900917|sp|Q5PJJ7|RUVX_SALPA RecName: Full=Putative Holliday junction resolvase
gi|81309593|sp|Q57K19|RUVX_SALCH RecName: Full=Putative Holliday junction resolvase
gi|189046105|sp|A9N4P3|RUVX_SALPB RecName: Full=Putative Holliday junction resolvase
gi|226731647|sp|B5F5M2|RUVX_SALA4 RecName: Full=Putative Holliday junction resolvase
gi|226731651|sp|B4THI2|RUVX_SALHS RecName: Full=Putative Holliday junction resolvase
gi|226731653|sp|B5BFQ4|RUVX_SALPK RecName: Full=Putative Holliday junction resolvase
gi|226731654|sp|B4TV66|RUVX_SALSV RecName: Full=Putative Holliday junction resolvase
gi|254767524|sp|C0PY74|RUVX_SALPC RecName: Full=Putative Holliday junction resolvase
gi|25306239|pir||AI0877 conserved hypothetical protein STY3250 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504174|emb|CAD02921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138993|gb|AAO70561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56129292|gb|AAV78798.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62129240|gb|AAX66943.1| putative endonuclease involved in recombination [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161365425|gb|ABX69193.1| hypothetical protein SPAB_03862 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194408528|gb|ACF68747.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194455451|gb|EDX44290.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194709629|gb|ACF88850.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195633281|gb|EDX51695.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197095441|emb|CAR61000.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197211188|gb|ACH48585.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197290851|gb|EDY30205.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|205331717|gb|EDZ18481.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205338254|gb|EDZ25018.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205343317|gb|EDZ30081.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205347041|gb|EDZ33672.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224469418|gb|ACN47248.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|320087529|emb|CBY97294.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|322716090|gb|EFZ07661.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
Length = 138
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+AI A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|124007537|ref|ZP_01692242.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123987020|gb|EAY26776.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 138
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 13/142 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID GTKR+GLA++DP + A + K V Q L + E I F++G+P
Sbjct: 4 IVAIDYGTKRVGLAVTDPLKIIATALDTVHSKDVIQF---LKDYHEQEGIELFVVGMPKR 60
Query: 79 MNGSEGPRVHSTRAFVH----NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
++G+E AF++ N D + DER T+ A +I ++K R +
Sbjct: 61 LDGTESHATKHVEAFLNLLKKNFPDTDIET----HDERFTSKIALNAMIAGGTTKKYRRE 116
Query: 135 K--VDSIAAALILQEVLDRISF 154
K +D ++A +ILQ L+++
Sbjct: 117 KGNIDKVSAVVILQSYLEKMQL 138
>gi|169634567|ref|YP_001708303.1| putative Holliday junction resolvase [Acinetobacter baumannii SDF]
gi|169797422|ref|YP_001715215.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE]
gi|184156655|ref|YP_001844994.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ACICU]
gi|213155764|ref|YP_002317809.1| hypothetical protein AB57_0400 [Acinetobacter baumannii AB0057]
gi|215484860|ref|YP_002327099.1| Uncharacterized protein family (UPF0081) family protein
[Acinetobacter baumannii AB307-0294]
gi|260550507|ref|ZP_05824717.1| endonuclease [Acinetobacter sp. RUH2624]
gi|260556314|ref|ZP_05828533.1| endonuclease [Acinetobacter baumannii ATCC 19606]
gi|301345137|ref|ZP_07225878.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AB056]
gi|301510702|ref|ZP_07235939.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AB058]
gi|301594962|ref|ZP_07239970.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AB059]
gi|332854386|ref|ZP_08435338.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013150]
gi|332867601|ref|ZP_08437749.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013113]
gi|332873063|ref|ZP_08441020.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6014059]
gi|169150349|emb|CAM88246.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE]
gi|169153359|emb|CAP02476.1| putative Holliday junction resolvase [Acinetobacter baumannii]
gi|183208249|gb|ACC55647.1| predicted endonuclease [Acinetobacter baumannii ACICU]
gi|193076168|gb|ABO10783.2| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978]
gi|213054924|gb|ACJ39826.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
gi|213987005|gb|ACJ57304.1| Uncharacterized protein family (UPF0081) family protein
[Acinetobacter baumannii AB307-0294]
gi|260406422|gb|EEW99904.1| endonuclease [Acinetobacter sp. RUH2624]
gi|260410369|gb|EEX03668.1| endonuclease [Acinetobacter baumannii ATCC 19606]
gi|322506542|gb|ADX01996.1| endonuclease [Acinetobacter baumannii 1656-2]
gi|323516421|gb|ADX90802.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
TCDC-AB0715]
gi|332728062|gb|EGJ59453.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013150]
gi|332733875|gb|EGJ65021.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013113]
gi|332738575|gb|EGJ69445.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6014059]
Length = 146
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI A+P P V K +LL + FI+GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + ++ DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFARRLRHQTNIETWMV-DERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQ 146
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQ 135
>gi|332666753|ref|YP_004449541.1| Holliday junction resolvase [Haliscomenobacter hydrossis DSM 1100]
gi|332335567|gb|AEE52668.1| Holliday junction resolvase [Haliscomenobacter hydrossis DSM 1100]
Length = 135
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 13/140 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID GTKR G+A++DP + A L T+ L + E++ AF++G P N++
Sbjct: 2 AIDYGTKRTGIAVTDPLQIIASG---LDTVPTTELMNFLRQYCQEEDVEAFVVGEPKNLD 58
Query: 81 GSEGPRVHSTRAFV---HNMI-DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135
+ H AFV N+ D++V + DER T+ A + + SRKKR K
Sbjct: 59 DTPAQIHHLVMAFVAQIENLFPDKRV----ILRDERFTSKDATRSIRQSVPSRKKRRDKG 114
Query: 136 -VDSIAAALILQEVLDRISF 154
VD ++A +ILQE L++ +
Sbjct: 115 LVDKVSAVIILQEYLEKYKY 134
>gi|119512614|ref|ZP_01631690.1| Holliday junction resolvase-like protein [Nodularia spumigena
CCY9414]
gi|119462747|gb|EAW43708.1| Holliday junction resolvase-like protein [Nodularia spumigena
CCY9414]
Length = 156
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 17 QPIAS---IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
QP S +D G KR+G+A D A + R + ++ + + + +I
Sbjct: 8 QPFISALGLDFGRKRMGVAGCDGTGLIATGLTTIERTSFERDVQQIRNIVDERQVQILVI 67
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +M+G+ G + + F + + + +P + DERLT+ A+Q+LI N S +
Sbjct: 68 GLPYSMDGTLGFQARQVQKFAKRL-GKALNLPVEYIDERLTSFQAEQLLIAENRSPSRHK 126
Query: 134 QKVDSIAAALILQEVLD 150
+D AA++ILQ+ LD
Sbjct: 127 GLIDRKAASIILQQWLD 143
>gi|85060002|ref|YP_455704.1| Holliday junction resolvase-like protein [Sodalis glossinidius str.
'morsitans']
gi|146325608|sp|Q2NRC6|RUVX_SODGM RecName: Full=Putative Holliday junction resolvase
gi|84780522|dbj|BAE75299.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 141
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRP---FLVRKKV--TQTALELLSFITTENIAAFII 73
I + D GT+ IG+AI R RP F R V Q +LL E + ++
Sbjct: 7 IMAFDFGTRSIGVAIGQ--RVTCTARPLTAFKARDGVPDWQQIEKLLKEWRPETV---VV 61
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+GSE P R F + M R V V DERL+TV A+ L + R
Sbjct: 62 GLPLNMDGSEQPLTARVRKFANRMHGR-FGVQVVLHDERLSTVEARAGLFERGGYRALEK 120
Query: 134 QKVDSIAAALILQEVLDRI 152
KVD+ +A +IL+ L++
Sbjct: 121 GKVDAGSAVIILESWLEQF 139
>gi|194098916|ref|YP_002001981.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
NCCP11945]
gi|239999198|ref|ZP_04719122.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
35/02]
gi|240013895|ref|ZP_04720808.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
DGI18]
gi|240016336|ref|ZP_04722876.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
FA6140]
gi|240080456|ref|ZP_04724999.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
FA19]
gi|240113174|ref|ZP_04727664.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
MS11]
gi|240115933|ref|ZP_04729995.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
PID18]
gi|240118230|ref|ZP_04732292.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
PID1]
gi|240121464|ref|ZP_04734426.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
PID24-1]
gi|240123779|ref|ZP_04736735.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
PID332]
gi|240125968|ref|ZP_04738854.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
SK-92-679]
gi|240128482|ref|ZP_04741143.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
SK-93-1035]
gi|254493967|ref|ZP_05107138.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|260440253|ref|ZP_05794069.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
DGI2]
gi|268595026|ref|ZP_06129193.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268596594|ref|ZP_06130761.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268599255|ref|ZP_06133422.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268601602|ref|ZP_06135769.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268603941|ref|ZP_06138108.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682404|ref|ZP_06149266.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268684562|ref|ZP_06151424.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268686872|ref|ZP_06153734.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291043546|ref|ZP_06569262.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|193934206|gb|ACF30030.1| Putative Holliday junction resolvase [Neisseria gonorrhoeae
NCCP11945]
gi|226513007|gb|EEH62352.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268548415|gb|EEZ43833.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268550382|gb|EEZ45401.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268583386|gb|EEZ48062.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268585733|gb|EEZ50409.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268588072|gb|EEZ52748.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622688|gb|EEZ55088.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268624846|gb|EEZ57246.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268627156|gb|EEZ59556.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291012009|gb|EFE03998.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|317164485|gb|ADV08026.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 151
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHADGTEHEMTHLSRKFGRRLNGR-FNLPVYWVDERLSSVYAESLLSEAQVLGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL L+
Sbjct: 124 VLDQVAAQAILHGFLE 139
>gi|144575317|gb|AAZ53576.2| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448]
gi|312601160|gb|ADQ90415.1| Putative Holliday junction resolvase [Mycoplasma hyopneumoniae 168]
Length = 91
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I+ ++G PL + G PR F +++ + + VF DERLTT AQ L+D+ +
Sbjct: 6 ISILVLGYPLTLAGKISPRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGI 64
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
S KKR + +D +AA +IL+ FL + KG
Sbjct: 65 SFKKRQKVIDKLAAQIILER------FLNTKKG 91
>gi|261401282|ref|ZP_05987407.1| putative Holliday junction resolvase [Neisseria lactamica ATCC
23970]
gi|269208768|gb|EEZ75223.1| putative Holliday junction resolvase [Neisseria lactamica ATCC
23970]
Length = 151
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
LP++ +G+E H +R F + R +P V+W DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLP-VYWVDERLSSVYAESLLSEARVFGKKRK 122
Query: 134 QKVDSIAAALILQEVLD 150
+D AA ILQ +
Sbjct: 123 SVLDQAAAQAILQSFFE 139
>gi|261392384|emb|CAX49926.1| conserved hypothetical protein [Neisseria meningitidis 8013]
Length = 151
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FNLPVYWMDERLSSVYAESLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 124 VLDQVAAQAILHGFFE 139
>gi|206577149|ref|YP_002236600.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae
342]
gi|226730741|sp|B5XUA1|RUVX_KLEP3 RecName: Full=Putative Holliday junction resolvase
gi|206566207|gb|ACI07983.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae
342]
Length = 138
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D GTK IG+A+ A P P L + + + A I+GLPLNM+
Sbjct: 7 GFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V V DERL+TV A+ L + R VDS +
Sbjct: 67 GTEQPLTARARNFA-NKIHGRFGVAIVLHDERLSTVEARAGLFEHGGYRALNKGSVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVVILESYFEQ 136
>gi|257055558|ref|YP_003133390.1| hypothetical protein Svir_15280 [Saccharomonospora viridis DSM
43017]
gi|256585430|gb|ACU96563.1| conserved hypothetical protein TIGR00250 [Saccharomonospora viridis
DSM 43017]
Length = 154
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
++D+G+ R+G+A+SDP A P L R T LE L+ + E ++ I+GLP +
Sbjct: 11 AVDVGSVRVGVALSDPTPILASPLVTLSRDADTDKDLEELARLVAEHDVVEVIVGLPRTL 70
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G + + +R V DERL+TVSA ++L V +K+ VD
Sbjct: 71 ADRHGTAAAIAADYARRLAERISPVAVRLADERLSTVSASRMLSQRGVKGRKQRAVVDQA 130
Query: 140 AAALILQEVLD 150
AA LQ LD
Sbjct: 131 AAVEFLQAWLD 141
>gi|113460159|ref|YP_718215.1| Holliday junction resolvase-like protein [Haemophilus somnus 129PT]
gi|170718190|ref|YP_001785215.1| Holliday junction resolvase-like protein [Haemophilus somnus 2336]
gi|123327115|sp|Q0I1B3|RUVX_HAES1 RecName: Full=Putative Holliday junction resolvase
gi|189046099|sp|B0UWW2|RUVX_HAES2 RecName: Full=Putative Holliday junction resolvase
gi|112822202|gb|ABI24291.1| possible endonuclease involved in recombination [Haemophilus somnus
129PT]
gi|168826319|gb|ACA31690.1| Holliday junction resolvase YqgF [Haemophilus somnus 2336]
Length = 141
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GTK IG A+ A P + L++ + ++GLPLN
Sbjct: 5 VLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPDWLKIEKCLKDWQPNIVVVGLPLN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSE H R F N ++ + V DERLTT A+ + R + +KVDS
Sbjct: 65 MDGSEQDLTHLARKFA-NRLNGRFGVKVELQDERLTTKQARDEIFQRGGYRALKKEKVDS 123
Query: 139 IAAALILQEVLD 150
I+A LIL+ +
Sbjct: 124 ISACLILESWFE 135
>gi|268679508|ref|YP_003303939.1| Holliday junction resolvase YqgF [Sulfurospirillum deleyianum DSM
6946]
gi|268617539|gb|ACZ11904.1| Holliday junction resolvase YqgF [Sulfurospirillum deleyianum DSM
6946]
Length = 135
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ IAS+D+G KRIG+A+ P+ ++RK Q A E+ +F+T I ++GLP
Sbjct: 2 KKIASLDVGLKRIGVALC-LASGIVTPQEAILRKNRDQAAREVDAFLTEWEIELLVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ E R H + V+ DE +++ A++++ + R+KR K+
Sbjct: 61 KGGSSEE----EMKRRITHFVSLLAFSGEVVYQDEYGSSLEAKEMM--QGIMRQKRDGKI 114
Query: 137 DSIAAALILQEVLD 150
DSIAA +IL+ LD
Sbjct: 115 DSIAAKVILERYLD 128
>gi|225453535|ref|XP_002275849.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 233
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R GLA+S + F+ RP V K + + L+LL E + FIIGLP++
Sbjct: 68 GVDLGMSRTGLALS---KGFS-VRPLSVLKLRGQKLELQLLEIAGREEVDEFIIGLPVSD 123
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E P+ + R+ + R + + DE T+ A ++IDM S+ R ++D
Sbjct: 124 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSLMIDMGHSKSARQNRID 183
Query: 138 SIAAALILQ 146
+ AA ++L+
Sbjct: 184 AYAAMMVLE 192
>gi|41407176|ref|NP_960012.1| Holliday junction resolvase-like protein [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|254775876|ref|ZP_05217392.1| Holliday junction resolvase-like protein [Mycobacterium avium
subsp. avium ATCC 25291]
gi|62900995|sp|Q741L2|RUVX_MYCPA RecName: Full=Putative Holliday junction resolvase
gi|41395527|gb|AAS03395.1| hypothetical protein MAP_1078 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 167
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 2/142 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID+G+ RIG+A SDP A P + R + + L + +T ++GLP +
Sbjct: 26 GIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVVGLPRTLA 85
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G + R P DERLTTV+AQ+ L V K++ +D A
Sbjct: 86 DRTGTSALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQRAVIDQAA 145
Query: 141 AALILQEVLD--RISFLESSKG 160
A ILQ LD R + E+ G
Sbjct: 146 AVAILQSWLDQRRAATREAGDG 167
>gi|288933582|ref|YP_003437641.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22]
gi|290511351|ref|ZP_06550720.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
gi|288888311|gb|ADC56629.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22]
gi|289776344|gb|EFD84343.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
Length = 139
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D GTK IG+A+ A P P L + + + A I+GLPLNM+
Sbjct: 8 GFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMD 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V V DERL+TV A+ L + R VDS +
Sbjct: 68 GTEQPLTARARNFA-NKIHGRFGVAIVLHDERLSTVEARAGLFEHGGYRALNKGSVDSAS 126
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 127 AVVILESYFEQ 137
>gi|149370600|ref|ZP_01890289.1| Holliday junction resolvase-like protein [unidentified eubacterium
SCB49]
gi|149356151|gb|EDM44708.1| Holliday junction resolvase-like protein [unidentified eubacterium
SCB49]
Length = 136
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A++D + A L + ++ L S++ EN+ A ++G P
Sbjct: 4 ILAIDYGGKRTGIAVTDEMQIIASG---LTTVETSKLLPFLESYLANENVTALVVGEPTQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
+G+ + F+ + +P DER T+ A Q +ID + +K+R K V
Sbjct: 61 KDGTPSSIEEEIQKFLKRFVKLYPLLPIHRQDERYTSKMAFQTMIDSGLKKKQRRNKALV 120
Query: 137 DSIAAALILQEVL 149
D IAA +ILQE +
Sbjct: 121 DEIAATIILQEFM 133
>gi|313680710|ref|YP_004058449.1| holliday junction resolvase yqgf [Oceanithermus profundus DSM
14977]
gi|313153425|gb|ADR37276.1| Holliday junction resolvase YqgF [Oceanithermus profundus DSM
14977]
Length = 133
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G RIG+A+++ GR A R ++ R+ + + E ++GLP
Sbjct: 3 GLDVGDARIGVAVAEEGRPLAFGRGWIERRDLEDDVARVCELARREEAGRVVVGLPRRTG 62
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138
G EG + RAF + + V FV DER TT A Q L ++ RKKR QK +D
Sbjct: 63 GEEGAQAAKVRAFAAALEAAGLEVRFV--DERFTTRVAAQAL--AHLPRKKRQQKGRLDE 118
Query: 139 IAAALILQEVLDR 151
AA IL+ L+R
Sbjct: 119 AAAVAILETYLER 131
>gi|320449493|ref|YP_004201589.1| hypothetical protein TSC_c04030 [Thermus scotoductus SA-01]
gi|320149662|gb|ADW21040.1| conserved hypothetical protein [Thermus scotoductus SA-01]
Length = 128
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 24 LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
+G RIGLA+ + G FA R +LVR+ + + LL F+ E + ++GLPL + E
Sbjct: 1 MGEARIGLAVGEEGSPFAFGRGYLVRRSLEEDVAALLDFVRREGLGKLLVGLPLRTDLKE 60
Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
+ V + + V V V DER TT +A + L ++ ++D ++A +
Sbjct: 61 SAQAQRVLPLVEALRAKGVEVELV--DERYTTQAAARRLKHAPKRIRREKGRLDEMSAVI 118
Query: 144 ILQEVL 149
+L+ L
Sbjct: 119 LLEGYL 124
>gi|293363867|ref|ZP_06610603.1| RNAse YqgF [Mycoplasma alligatoris A21JP2]
gi|292552357|gb|EFF41131.1| RNAse YqgF [Mycoplasma alligatoris A21JP2]
Length = 139
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLN 78
++DLG++ G AISD G F + Q L EL + I I+G PL
Sbjct: 5 ALDLGSRTCGFAISDELGIIATGLDNFRFFEDNYQAVLNELTKYTKQYKIDTIILGYPLK 64
Query: 79 MNGSEGP---RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+GS+ RV S + + + ID KV V DE+ +T +A+ ILI + RKKR Q
Sbjct: 65 NDGSKSQSTLRVESFKKMIEDNIDIKV----VLVDEQYSTKNAENILIFSGMKRKKRKQF 120
Query: 136 VDSIAAALILQEVL 149
D +AA LIL++ L
Sbjct: 121 KDKLAAQLILEDFL 134
>gi|7635496|emb|CAB88667.1| hypothetical 19.6 kDa protein [Cicer arietinum]
Length = 171
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 83/156 (53%), Gaps = 11/156 (7%)
Query: 5 LIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLS 61
L DLVK+ + + + +D+G K +GLA+SD + A P LVRKK + A + S
Sbjct: 9 LFHDLVKTTQKERGRLIGLDVGDKYVGLALSDFDNKIASPFSVLVRKKTNINLMAADFKS 68
Query: 62 FITTENIAAFIIGLPLNMN--GSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVS 117
++ ++ F+IGLP + + S+ +V + F+ N+ ++ + + +W+E T+ +
Sbjct: 69 LVSKYSLKGFVIGLPFDRHLVSSDAVKV---KVFIDNLRRTNMFDGLKYTYWNECFTSKN 125
Query: 118 AQQILIDMNVSRKKRIQK-VDSIAAALILQEVLDRI 152
+ ++ +N++ + +D AA ILQ LD +
Sbjct: 126 VEILIKPLNLNHPVHSKTMLDKFAAVGILQGYLDYV 161
>gi|262280744|ref|ZP_06058527.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262257644|gb|EEY76379.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|325124292|gb|ADY83815.1| putative Holliday junction resolvase [Acinetobacter calcoaceticus
PHEA-2]
Length = 146
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI A+P P V K +LL + F++GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + + + DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFARR-LRHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQ 146
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQ 135
>gi|78355361|ref|YP_386810.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|146325569|sp|Q316N1|RUVX_DESDG RecName: Full=Putative Holliday junction resolvase
gi|78217766|gb|ABB37115.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 144
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GT+R G+A++D A PR +V ELLS + E A ++GLPL
Sbjct: 5 GIDYGTRRTGIAVTDGAGMMAFPRRTIVMSTRDAFFAELLSVVEEERPAGVVVGLPLLAG 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G E R FV + R+ +P E L++ A + L + +S ++R VD A
Sbjct: 65 GEETLITRQVRNFVARL-RRRSSLPVYLVAEELSSFEAGEDLREAGLSFREREAVVDQQA 123
Query: 141 AALILQEVLD 150
A IL+ L+
Sbjct: 124 AVRILESFLN 133
>gi|224539751|ref|ZP_03680290.1| hypothetical protein BACCELL_04660 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518629|gb|EEF87734.1| hypothetical protein BACCELL_04660 [Bacteroides cellulosilyticus
DSM 14838]
Length = 140
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
I +ID G KR G+A+SD + A+ T ELL+FI E + ++G
Sbjct: 4 ILAIDYGKKRTGIAVSDTLQMIANGL-------TTVPTHELLTFILDYVGKEPVERILVG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + FV + + +P + DER T+V A + +++ + +K R
Sbjct: 57 LPKQMNNEASENMKRIEPFVRLLKKKLPAMPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLDRISF 154
K VD I+A +ILQ L+ F
Sbjct: 117 KALVDEISATIILQSYLENKRF 138
>gi|299771798|ref|YP_003733824.1| Holliday junction resolvase-like protein [Acinetobacter sp. DR1]
gi|298701886|gb|ADI92451.1| Holliday junction resolvase-like protein [Acinetobacter sp. DR1]
Length = 146
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI A+P P V K +LL + F++GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPNLFLVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + + + DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFARR-LRHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQ 146
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQ 135
>gi|294155488|ref|YP_003559872.1| putative Holliday junction resolvase [Mycoplasma crocodyli MP145]
gi|291600199|gb|ADE19695.1| putative Holliday junction resolvase [Mycoplasma crocodyli MP145]
Length = 139
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 73/134 (54%), Gaps = 7/134 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFA----HPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
++DLG++ G AISD A + R F + + E+L ++ I I+G P
Sbjct: 5 ALDLGSRTCGFAISDELEVIAIGLDNFRFFEDDYEAVKN--EVLRYMKEYKIDGIILGYP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+GS+ + F +++ + + +P ++ DE+ +T +A++ILI + ++R+KR
Sbjct: 63 KKNDGSKSDSTYRVENF-KDLLSKFIDIPIIYVDEQYSTKNAEKILIALGLTRQKRKNFK 121
Query: 137 DSIAAALILQEVLD 150
D +AA LIL++ L+
Sbjct: 122 DKLAAQLILEDYLN 135
>gi|189502649|ref|YP_001958366.1| Holliday junction resolvase-like protein [Candidatus Amoebophilus
asiaticus 5a2]
gi|226725481|sp|B3ETT5|RUVX_AMOA5 RecName: Full=Putative Holliday junction resolvase
gi|189498090|gb|ACE06637.1| hypothetical protein Aasi_1327 [Candidatus Amoebophilus asiaticus
5a2]
Length = 141
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 19/147 (12%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR+GL+++DP + A P L T L +++ EN+ AF++G P +
Sbjct: 4 IMAIDYGLKRVGLSVTDPLQIIASP---LTTVAANDTLTFLQTYVKKENVEAFVVGYPTD 60
Query: 79 MNGSEGPRVHSTRAFVH----NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+ P + + F+ N D++++ DER T+ A L++ +K R
Sbjct: 61 IKDKNTPIIVAISQFIELLQRNFPDQQIFQ----HDERYTSKLAAASLVEGGFKKKDRRN 116
Query: 135 K--VDSIAAALILQEVLDRISFLESSK 159
K +D ++A +ILQ SFL S K
Sbjct: 117 KENLDKLSATIILQ------SFLSSYK 137
>gi|50954762|ref|YP_062050.1| hypothetical protein Lxx10920 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|62900966|sp|Q6AFA0|RUVX_LEIXX RecName: Full=Putative Holliday junction resolvase
gi|50951244|gb|AAT88945.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 155
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID+GT RIG++ SD A P + R + +T + I+GLPL ++
Sbjct: 8 GIDVGTVRIGVSCSDLHGTLATPYETVARSGDAADRRRIAEIVTDLGVVEIIVGLPLALS 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G AF ++ +V P DERL+TVSA L + K VD A
Sbjct: 68 GVHTASTADAVAFAEALV-VEVGAPVRLVDERLSTVSAHSALRSSGKNAKSSRPVVDQAA 126
Query: 141 AALILQEVLD 150
A +ILQ LD
Sbjct: 127 ATIILQHALD 136
>gi|164685861|ref|ZP_01947456.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU
Goat Q177']
gi|212219592|ref|YP_002306379.1| Holliday junction resolvase-like protein [Coxiella burnetii
CbuK_Q154]
gi|226725506|sp|B6J6M4|RUVX_COXB1 RecName: Full=Putative Holliday junction resolvase
gi|164601378|gb|EAX31927.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU
Goat Q177']
gi|212013854|gb|ACJ21234.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
Length = 141
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 15 PNQPIASI--DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS---FITTENIA 69
PNQ + ++ D G KRIG+A+ G+ H + K L+ I T +
Sbjct: 2 PNQNLIALGFDFGMKRIGVAV---GQTVTHSANAIAILKAQDGVLDWEKIKMLIETWHAN 58
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++G+P NM+GSE + R F + R +P DERLTT+ A++ + ++
Sbjct: 59 VLVVGIPYNMDGSEQTLTFAARKFARKLQTR-FGLPLSMVDERLTTIEAKRQWYEQGLT- 116
Query: 130 KKRIQKVDSIAAALILQEVL 149
KR Q +D+ AA LIL++ L
Sbjct: 117 -KRPQHLDNYAAKLILEQWL 135
>gi|195952585|ref|YP_002120875.1| Holliday junction resolvase YqgF [Hydrogenobaculum sp. Y04AAS1]
gi|195932197|gb|ACG56897.1| Holliday junction resolvase YqgF [Hydrogenobaculum sp. Y04AAS1]
Length = 123
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID GTKRIGLA+ D + +PF + K L + I ++G PL
Sbjct: 2 ILGIDYGTKRIGLALGD--KHLKIYKPFKIIKNDKNLIQTLKHIVKAYKIELIVLGYPLT 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G EG R + F + ++ +++ + V DER TT A+ ++S +K I D
Sbjct: 60 PSGKEGQRAKKVKKF-YELLKKELNIDIVLQDERYTTFEAK------SLSDEKEI---DH 109
Query: 139 IAAALILQEVLDRI 152
I+A +IL+E + +
Sbjct: 110 ISAYIILKEYAENL 123
>gi|114778470|ref|ZP_01453314.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1]
gi|114551195|gb|EAU53754.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1]
Length = 168
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 6/134 (4%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFA-HPRPFLVRKKVTQTALELLSFITTENIAAFII-GL 75
P+ ++D+G KRIG+A+ D RF R + + L+ + E A ++ GL
Sbjct: 28 PLIALDIGMKRIGVAVCD---RFGISCRGVTCLMRRDHGWPQQLAKVVREYGAKSVVAGL 84
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+G+EG + RA V + + + +P F DERL+T +A++ L + KK +K
Sbjct: 85 PKNMDGTEGVQAADARAAVAEL-KKTLPLPVTFQDERLSTWTAKERLYAQGLREKKVQEK 143
Query: 136 VDSIAAALILQEVL 149
+D AAA+IL++ L
Sbjct: 144 LDQTAAAVILEDFL 157
>gi|56751716|ref|YP_172417.1| Holliday junction resolvase-like protein [Synechococcus elongatus
PCC 6301]
gi|62900910|sp|Q5N1C3|RUVX_SYNP6 RecName: Full=Putative Holliday junction resolvase
gi|56686675|dbj|BAD79897.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 149
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P +D+G +RIG+A D +VR+ + + + +IG
Sbjct: 2 PYYAALGLDVGRRRIGVAGCDRLGITVQGLTTIVRRDFASDVAAISAIAKERQVELLVIG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +M+GS G + T+ F + + + +P + DERLT+ A++++ + S +
Sbjct: 62 LPYSMDGSLGSQAKQTQRFATRL-SKALQLPITYVDERLTSFEAEEMIKAVGRSPSRDKG 120
Query: 135 KVDSIAAALILQEVLD 150
+D AAALILQ+ LD
Sbjct: 121 AIDRKAAALILQQWLD 136
>gi|291533812|emb|CBL06925.1| Predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Megamonas hypermegale ART12/1]
Length = 75
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G R + F +++ +FWDERL+TV+A + L++ +VSR KR + +D
Sbjct: 1 MNGTVGERCDIVKHFTDKILEDIPDAEIIFWDERLSTVAADRYLLEADVSRAKRKKVIDK 60
Query: 139 IAAALILQEVLDRI 152
+AA ILQ LD +
Sbjct: 61 MAAVFILQGYLDSL 74
>gi|237785597|ref|YP_002906302.1| Holliday junction resolvase-like protein [Corynebacterium
kroppenstedtii DSM 44385]
gi|259495700|sp|C4LIV4|RUVX_CORK4 RecName: Full=Putative Holliday junction resolvase
gi|237758509|gb|ACR17759.1| hypothetical protein ckrop_1006 [Corynebacterium kroppenstedtii DSM
44385]
Length = 164
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTEN---IAAFIIGL 75
+D+GT RIG+A+SDP A P + R K+ ++ S + + + I+GL
Sbjct: 21 GLDVGTVRIGVAVSDPDGILATPVSTVARTTKRRGPDGEDIDSIVQLAHDYSVVEVIVGL 80
Query: 76 PLNMNGSEGPRVHSTRAF---VHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
P ++GS G V + + ++R V VP + DER+TTV AQ L D +S K+
Sbjct: 81 PRMLDGSAGSSVKHAQDVGFRIRRRLERDGVDVPIRYVDERMTTVMAQSNLHDAGISVKE 140
Query: 132 RIQKVDSIAAALILQEVLDR 151
+D AA ILQ LD+
Sbjct: 141 GRSVIDQAAAVEILQTWLDQ 160
>gi|307565554|ref|ZP_07628034.1| RNAse YqgF [Prevotella amnii CRIS 21A-A]
gi|307345713|gb|EFN91070.1| RNAse YqgF [Prevotella amnii CRIS 21A-A]
Length = 139
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A++DP R A+ L + L +I E + ++G P
Sbjct: 4 IIAIDYGKKRTGIAVTDPLRIIANG---LATVSTPELYAFLQEYIQREKVDLIVMGKPTQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
++G + FV VP ++DER T+ A Q +I V +K R Q
Sbjct: 61 LSGKPSENMGRVEQFVLRWKKACPSVPIEYYDERFTSALAHQAMISGGVKKKVRRQDKGL 120
Query: 136 VDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 121 VDEISATIILQDFM 134
>gi|219871133|ref|YP_002475508.1| Holliday junction resolvase-like protein [Haemophilus parasuis
SH0165]
gi|254767517|sp|B8F5F8|RUVX_HAEPS RecName: Full=Putative Holliday junction resolvase
gi|219691337|gb|ACL32560.1| holliday junction resolvase-like protein/crossover junction
endodeoxyribonuclease [Haemophilus parasuis SH0165]
Length = 138
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + + D GT IG A+ A P + ++ I ++GL
Sbjct: 2 SQTVLAFDFGTNSIGCAVGQSITGTAQGLPAFKAQDGIPNWEQIGKVIAQWQPDLLVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P + F N ++ + +P DERLTTV A+ + + + K
Sbjct: 62 PLNMDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVEAKSEIFARGGFKALKKGK 120
Query: 136 VDSIAAALILQEVLDRIS 153
VD+I+A LIL+ ++ S
Sbjct: 121 VDAISACLILESWFEQQS 138
>gi|254360570|ref|ZP_04976719.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
PHL213]
gi|261493723|ref|ZP_05990241.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261494545|ref|ZP_05991029.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|153091110|gb|EDN73115.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
PHL213]
gi|261309794|gb|EEY11013.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261310613|gb|EEY11798.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 141
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 31/147 (21%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
+ + D GT IG A+ + +T TA L +F + I +
Sbjct: 9 VIAFDFGTNSIGCAVG---------------QSITGTAQGLTTFKAQDGIPNWEEIGKLL 53
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLPLNM+G+E P R F N ++ + +P DERLTTV A+ +
Sbjct: 54 QDWKPDMLVVGLPLNMDGTEQPLTQRARKFA-NRLNGRFNLPVELQDERLTTVEAKAEIF 112
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + KVDSI+A LIL+ +
Sbjct: 113 SRGGYKALKKDKVDSISACLILESWFE 139
>gi|320161632|ref|YP_004174857.1| putative holliday junction resolvase [Anaerolinea thermophila
UNI-1]
gi|319995486|dbj|BAJ64257.1| putative holliday junction resolvase [Anaerolinea thermophila
UNI-1]
Length = 152
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLP 76
I ++D G RIGLAISDP A R V V + A + T + + I+G
Sbjct: 5 ILAVDPGDVRIGLAISDPTGTIA--RALGVIHHVARAIDAATIAQIATEQGVVRIIVGQA 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ +G P+ + A + I ++ +P WDE +T AQ M V RK+R +
Sbjct: 63 LDDHGLPTPQGRKS-ARLAEAIQQQTSIPVELWDESGSTNKAQDTRRIMGVKRKQRQGHL 121
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ+ L+
Sbjct: 122 DDLAAVIILQDYLE 135
>gi|209523862|ref|ZP_03272415.1| Holliday junction resolvase YqgF [Arthrospira maxima CS-328]
gi|209495894|gb|EDZ96196.1| Holliday junction resolvase YqgF [Arthrospira maxima CS-328]
Length = 148
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G +RIG+A D A +VR + + I + ++GLP N
Sbjct: 14 GLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLAQFQAIIQQRQVQILVVGLPYLSN 73
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G G + + + + + + +P + DERLT+V A+Q+L + + +D A
Sbjct: 74 GELGTQARQIQKYTRRL-QKSLALPVEYVDERLTSVEAEQMLKGQKIPLSENKALIDRKA 132
Query: 141 AALILQEVLDR 151
AALILQ+ LD+
Sbjct: 133 AALILQQWLDQ 143
>gi|325529367|gb|EGD06294.1| Holliday junction resolvase-like protein [Burkholderia sp. TJI49]
Length = 149
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 7/139 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G KRIG+AI + R A P L R+ + ELL+ + A ++GLP+
Sbjct: 13 AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPD---ALVVGLPM 69
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ + F N ++ + +P + DER ++V A+ L + NV + R+ +D
Sbjct: 70 HPDGTPHDMTQQAKRFG-NQLNGRFGLPVSWVDERYSSVEAEAGLRERNVRGRARVDMLD 128
Query: 138 SIAAALILQEVLDRISFLE 156
+ AA +ILQ+ LD++S E
Sbjct: 129 AEAARVILQQYLDQLSDHE 147
>gi|297734533|emb|CBI16584.3| unnamed protein product [Vitis vinifera]
Length = 679
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 15/132 (11%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLG R GLA+S + F+ RP V K + + L+LL E + FIIGLP++ +
Sbjct: 515 VDLGMSRTGLALS---KGFS-VRPLSVLKLRGQKLELQLLEIAGREEVDEFIIGLPVSDD 570
Query: 81 GSEGPRVHSTRAFVHNMIDR------KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
G E P+ + R+ + R +VY+ DE T+ A ++IDM S+ R
Sbjct: 571 GKETPQSNKVRSVAGRLAARAAERGWRVYLQ----DEHGTSEEALSLMIDMGHSKSARQN 626
Query: 135 KVDSIAAALILQ 146
++D+ AA ++L+
Sbjct: 627 RIDAYAAMMVLE 638
>gi|110597280|ref|ZP_01385568.1| Holliday junction resolvase YqgF [Chlorobium ferrooxidans DSM
13031]
gi|110341116|gb|EAT59584.1| Holliday junction resolvase YqgF [Chlorobium ferrooxidans DSM
13031]
Length = 143
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +ID GTKRIG+A SDP + FA P + R ++ E+L ++ I IIG PL
Sbjct: 9 VIAIDYGTKRIGVAKSDPLQLFAQPVGTVDRAGLSGMLEEMLR---SDEIGRVIIGYPLG 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
NG F+ +++ + DE ++ A++IL SRK R +K +
Sbjct: 66 GNGETNAMTGVIDRFIEDLLVEFPQLMIERVDEHHSSKDARKILAASGKSRKVRQEKGRI 125
Query: 137 DSIAAALILQEVLD 150
DS AA ++L E L+
Sbjct: 126 DSAAACVLLTEYLE 139
>gi|154707335|ref|YP_001425496.1| Holliday junction resolvase-like protein [Coxiella burnetii Dugway
5J108-111]
gi|212213538|ref|YP_002304474.1| Holliday junction resolvase-like protein [Coxiella burnetii
CbuG_Q212]
gi|226725507|sp|B6J3V7|RUVX_COXB2 RecName: Full=Putative Holliday junction resolvase
gi|226725508|sp|A9KDE8|RUVX_COXBN RecName: Full=Putative Holliday junction resolvase
gi|154356621|gb|ABS78083.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111]
gi|212011948|gb|ACJ19329.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
Length = 141
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 15 PNQPIASI--DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
PNQ + ++ D G KRIG+A+ A+ L + ++ I T + +
Sbjct: 2 PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVLV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P NM+GSE + R F + R +P DERLTT+ A++ + ++ KR
Sbjct: 62 VGIPYNMDGSEQTLTFAARKFARKLQTR-FGLPVSMVDERLTTIEAKRQWYEQGLT--KR 118
Query: 133 IQKVDSIAAALILQEVL 149
Q +D+ AA LIL++ L
Sbjct: 119 PQHLDNYAAKLILEQWL 135
>gi|227888504|ref|ZP_04006309.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972]
gi|227834773|gb|EEJ45239.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972]
gi|307554931|gb|ADN47706.1| putative holliday junction resolvase [Escherichia coli ABU 83972]
Length = 138
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKSKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|167623110|ref|YP_001673404.1| Holliday junction resolvase-like protein [Shewanella halifaxensis
HAW-EB4]
gi|167353132|gb|ABZ75745.1| Holliday junction resolvase YqgF [Shewanella halifaxensis HAW-EB4]
Length = 140
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFII 73
++ + D GTK IG+AI A RP L K V E+ + IT ++
Sbjct: 3 DKSVLGFDYGTKSIGIAIGQ--ELTASARPLLSIKAVDGIPKWEEIGALITEWKPDLVVV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+G+E R F N I + V DERLTT A+ L +M +
Sbjct: 61 GLPLNMDGTEQEMTQRARKFA-NRISGRFGVKVATQDERLTTADAKARLFEMGGYKALTK 119
Query: 134 QKVDSIAAALILQEVLD 150
+VD+++A LI++ +
Sbjct: 120 GQVDAMSAVLIVESYFE 136
>gi|19704033|ref|NP_603595.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296327898|ref|ZP_06870434.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|32130042|sp|Q8RFJ7|RUVX_FUSNN RecName: Full=Putative Holliday junction resolvase
gi|19714225|gb|AAL94894.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296155032|gb|EFG95813.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 138
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 8/134 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79
++D+G RIG+A SD A P + RKKV +++ ++ I EN ++ G+P ++
Sbjct: 6 ALDIGDVRIGVARSDIMGIIASPLETINRKKVK--SVKRIAEICKENDTNLVVVGIPKSL 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136
+G E + R ++ + + + DER +TV A IL ++N + K+++ V
Sbjct: 64 DGEEKRQAEKVREYIEKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--V 121
Query: 137 DSIAAALILQEVLD 150
D +AA++ILQ LD
Sbjct: 122 DKVAASIILQTYLD 135
>gi|256384327|gb|ACU78897.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
str. GM12]
gi|256385160|gb|ACU79729.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
str. GM12]
gi|296455329|gb|ADH21564.1| conserved hypothetical protein [synthetic Mycoplasma mycoides
JCVI-syn1.0]
Length = 143
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 7/139 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q I ++D+G+K IGLA S + Q +L S++ N + ++G P
Sbjct: 3 QSIIALDIGSKTIGLAYSSGVIASSLDTIRFEEYNFNQGLKQLDSYLKKYNPSIIVVGYP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-----VFWDERLTTVSAQQILIDMNVSRKK 131
NMN + G R + +D +Y F + DER TT A+ ILI N++R+K
Sbjct: 63 KNMNNTIGERAEMVDYVIEMFLD--MYKNFNEDQIIKIDERRTTKIAKNILIQANLTREK 120
Query: 132 RIQKVDSIAAALILQEVLD 150
+ + DS+AA LIL+ L+
Sbjct: 121 QKKYKDSLAAQLILELYLE 139
>gi|90409104|ref|ZP_01217226.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3]
gi|90309778|gb|EAS37941.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3]
Length = 149
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
KP + + D G+K IG+A A P + + L I II
Sbjct: 8 KPLKSLMGFDFGSKSIGIATGQMITMTAQPLLAIKAQNGIPNWDNLEQLIKEWQPDMLII 67
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+G+E + F N + + V DERLTT SA++ + ++ +
Sbjct: 68 GLPLNMDGTEQYITQRAKKFA-NRLHGRFGVKIALQDERLTTASAKEFIFELGGYKALDK 126
Query: 134 QKVDSIAAALILQEVLDR 151
K+DS++AALIL+ + +
Sbjct: 127 GKIDSVSAALILESWMSQ 144
>gi|219362555|ref|NP_001136992.1| hypothetical protein LOC100217155 [Zea mays]
gi|194697900|gb|ACF83034.1| unknown [Zea mays]
Length = 174
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78
+D+G+K +G+AISD R A P L R K + A + + ++ +IA F++G P
Sbjct: 27 GLDVGSKYVGVAISDEKNRVAMPLSVLCRTKTNINLMADDFKTLVSMYSIAGFVVGYPFK 86
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY---VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+ G P + + + + + +P+ +WDE T+ + +L +N+ +
Sbjct: 87 IYGQ--PCASAIQVSLAGELCKTGKLDDLPYAYWDENFTSKCVEALLHPLNLKDLDDAKT 144
Query: 136 V-DSIAAALILQEVLDRIS 153
+ D AA ILQ LD ++
Sbjct: 145 MTDKFAAVCILQGYLDNMN 163
>gi|289524577|ref|ZP_06441431.1| putative Holliday junction resolvase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289502182|gb|EFD23346.1| putative Holliday junction resolvase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 107
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 24 LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
+G+ RIG+AISDP FA FL + L LL I N+ +IGLP+ NG +
Sbjct: 1 MGSVRIGIAISDPLGIFAQGVGFLNAQGSWLEDLALL--IRKHNVKKVVIGLPIRTNGKK 58
Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+ + + + F+ WDER TT AQ L D +S KK+
Sbjct: 59 DREADAISDLTDKLKEIFPDITFILWDERFTTTIAQNYLRDSGMSGKKK 107
>gi|281423117|ref|ZP_06254030.1| putative Holliday junction resolvase [Prevotella oris F0302]
gi|281402453|gb|EFB33284.1| putative Holliday junction resolvase [Prevotella oris F0302]
Length = 144
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I SID G KR GLA++D + A+ L + L +I E + +IG P
Sbjct: 4 ILSIDYGKKRTGLAVTDSLQIIANG---LATVSTSSLIDYLKDYIAKEPVERIVIGRPTQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
+G + FV+ +P ++DER T+V A Q++ID V +K R +
Sbjct: 61 PDGRPSENLARVEQFVNRWRKLVPNIPIEYYDERFTSVIAHQVVIDSGVRKKVRKENKGL 120
Query: 136 VDSIAAALILQEVL 149
+D I+A +ILQ+ +
Sbjct: 121 IDEISATIILQDYM 134
>gi|123443623|ref|YP_001007595.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|332162807|ref|YP_004299384.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|167016517|sp|A1JPT6|RUVX_YERE8 RecName: Full=Putative Holliday junction resolvase
gi|122090584|emb|CAL13453.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318604352|emb|CBY25850.1| putative Holliday junction resolvase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325667037|gb|ADZ43681.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330858997|emb|CBX69355.1| putative Holliday junction resolvase [Yersinia enterocolitica
W22703]
Length = 140
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 65/150 (43%), Gaps = 31/150 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ I + D GTK IG+AI ++VT TA L SF + +
Sbjct: 3 NRTIVAFDFGTKSIGVAIG---------------QEVTGTARALTSFKAQDGTPDWQKVE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E P R F N + + V DERL+TV A+
Sbjct: 48 KLLKEWQPDLVVVGLPLNMDGTEQPLTARARRFA-NRLHGRFGVQIALQDERLSTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L D R VD+ +A +IL+ D
Sbjct: 107 NLFDSGGYRALDKGSVDAASAVIILESWFD 136
>gi|24114204|ref|NP_708714.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str.
301]
gi|30064265|ref|NP_838436.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str.
2457T]
gi|74313506|ref|YP_311925.1| Holliday junction resolvase-like protein [Shigella sonnei Ss046]
gi|82545428|ref|YP_409375.1| Holliday junction resolvase-like protein [Shigella boydii Sb227]
gi|110806857|ref|YP_690377.1| Holliday junction resolvase-like protein [Shigella flexneri 5 str.
8401]
gi|157158748|ref|YP_001464301.1| Holliday junction resolvase-like protein [Escherichia coli E24377A]
gi|170681746|ref|YP_001745110.1| Holliday junction resolvase-like protein [Escherichia coli SMS-3-5]
gi|187731869|ref|YP_001881722.1| Holliday junction resolvase-like protein [Shigella boydii CDC
3083-94]
gi|191167958|ref|ZP_03029761.1| putative Holliday junction resolvase [Escherichia coli B7A]
gi|193063467|ref|ZP_03044556.1| putative Holliday junction resolvase [Escherichia coli E22]
gi|193067378|ref|ZP_03048346.1| putative Holliday junction resolvase [Escherichia coli E110019]
gi|194426343|ref|ZP_03058898.1| putative Holliday junction resolvase [Escherichia coli B171]
gi|194431639|ref|ZP_03063930.1| putative Holliday junction resolvase [Shigella dysenteriae 1012]
gi|194436895|ref|ZP_03068995.1| putative Holliday junction resolvase [Escherichia coli 101-1]
gi|215488247|ref|YP_002330678.1| Holliday junction resolvase-like protein [Escherichia coli O127:H6
str. E2348/69]
gi|218550196|ref|YP_002383987.1| Holliday junction resolvase-like protein [Escherichia fergusonii
ATCC 35469]
gi|218555508|ref|YP_002388421.1| Holliday junction resolvase-like protein [Escherichia coli IAI1]
gi|218706464|ref|YP_002413983.1| Holliday junction resolvase-like protein [Escherichia coli UMN026]
gi|254037998|ref|ZP_04872056.1| Holliday junction resolvase [Escherichia sp. 1_1_43]
gi|256019249|ref|ZP_05433114.1| Holliday junction resolvase-like protein [Shigella sp. D9]
gi|260845619|ref|YP_003223397.1| putative Holliday junction resolvase [Escherichia coli O103:H2 str.
12009]
gi|260857082|ref|YP_003230973.1| putative Holliday junction resolvase [Escherichia coli O26:H11 str.
11368]
gi|260869636|ref|YP_003236038.1| putative Holliday junction resolvase [Escherichia coli O111:H- str.
11128]
gi|293406456|ref|ZP_06650382.1| Holliday junction resolvase-like protein [Escherichia coli
FVEC1412]
gi|293449279|ref|ZP_06663700.1| hypothetical protein ECCG_02310 [Escherichia coli B088]
gi|298382193|ref|ZP_06991790.1| Holliday junction resolvase [Escherichia coli FVEC1302]
gi|300815581|ref|ZP_07095805.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
107-1]
gi|300900234|ref|ZP_07118418.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
198-1]
gi|300925055|ref|ZP_07140973.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1]
gi|300928108|ref|ZP_07143653.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
187-1]
gi|307310430|ref|ZP_07590078.1| Holliday junction resolvase YqgF [Escherichia coli W]
gi|309794038|ref|ZP_07688463.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
145-7]
gi|312964788|ref|ZP_07779028.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|331664532|ref|ZP_08365438.1| putative Holliday junction resolvase [Escherichia coli TA143]
gi|331674430|ref|ZP_08375190.1| putative Holliday junction resolvase [Escherichia coli TA280]
gi|331684576|ref|ZP_08385168.1| putative Holliday junction resolvase [Escherichia coli H299]
gi|332280357|ref|ZP_08392770.1| holliday junction resolvase [Shigella sp. D9]
gi|62901027|sp|Q83JS4|RUVX_SHIFL RecName: Full=Putative Holliday junction resolvase
gi|123342527|sp|Q0T0U3|RUVX_SHIF8 RecName: Full=Putative Holliday junction resolvase
gi|126352258|sp|Q3YXS2|RUVX_SHISS RecName: Full=Putative Holliday junction resolvase
gi|146325606|sp|Q31WL1|RUVX_SHIBS RecName: Full=Putative Holliday junction resolvase
gi|167012718|sp|A7ZR72|RUVX_ECO24 RecName: Full=Putative Holliday junction resolvase
gi|226695304|sp|B2U0W9|RUVX_SHIB3 RecName: Full=Putative Holliday junction resolvase
gi|226725518|sp|B7LYX9|RUVX_ECO8A RecName: Full=Putative Holliday junction resolvase
gi|226725520|sp|B7N7K2|RUVX_ECOLU RecName: Full=Putative Holliday junction resolvase
gi|226725522|sp|B1LDF8|RUVX_ECOSM RecName: Full=Putative Holliday junction resolvase
gi|226725523|sp|B7LPR6|RUVX_ESCF3 RecName: Full=Putative Holliday junction resolvase
gi|254767514|sp|B7UHZ6|RUVX_ECO27 RecName: Full=Putative Holliday junction resolvase
gi|24053351|gb|AAN44421.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042522|gb|AAP18246.1| hypothetical protein S3144 [Shigella flexneri 2a str. 2457T]
gi|73856983|gb|AAZ89690.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81246839|gb|ABB67547.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|110616405|gb|ABF05072.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|157080778|gb|ABV20486.1| conserved hypothetical protein TIGR00250 [Escherichia coli E24377A]
gi|170519464|gb|ACB17642.1| putative Holliday junction resolvase [Escherichia coli SMS-3-5]
gi|187428861|gb|ACD08135.1| putative Holliday junction resolvase [Shigella boydii CDC 3083-94]
gi|190902043|gb|EDV61789.1| putative Holliday junction resolvase [Escherichia coli B7A]
gi|192930744|gb|EDV83349.1| putative Holliday junction resolvase [Escherichia coli E22]
gi|192959335|gb|EDV89770.1| putative Holliday junction resolvase [Escherichia coli E110019]
gi|194415651|gb|EDX31918.1| putative Holliday junction resolvase [Escherichia coli B171]
gi|194419995|gb|EDX36073.1| putative Holliday junction resolvase [Shigella dysenteriae 1012]
gi|194424377|gb|EDX40364.1| putative Holliday junction resolvase [Escherichia coli 101-1]
gi|215266319|emb|CAS10750.1| predicted Holliday junction resolvase [Escherichia coli O127:H6
str. E2348/69]
gi|218357737|emb|CAQ90381.1| Holliday junction resolvase [Escherichia fergusonii ATCC 35469]
gi|218362276|emb|CAQ99897.1| Holliday junction resolvase [Escherichia coli IAI1]
gi|218433561|emb|CAR14464.1| Holliday junction resolvase [Escherichia coli UMN026]
gi|226839622|gb|EEH71643.1| Holliday junction resolvase [Escherichia sp. 1_1_43]
gi|257755731|dbj|BAI27233.1| predicted Holliday junction resolvase [Escherichia coli O26:H11
str. 11368]
gi|257760766|dbj|BAI32263.1| predicted Holliday junction resolvase [Escherichia coli O103:H2
str. 12009]
gi|257765992|dbj|BAI37487.1| predicted Holliday junction resolvase [Escherichia coli O111:H-
str. 11128]
gi|281602286|gb|ADA75270.1| putative Holliday junction resolvase [Shigella flexneri 2002017]
gi|291322369|gb|EFE61798.1| hypothetical protein ECCG_02310 [Escherichia coli B088]
gi|291426462|gb|EFE99494.1| Holliday junction resolvase-like protein [Escherichia coli
FVEC1412]
gi|298277333|gb|EFI18849.1| Holliday junction resolvase [Escherichia coli FVEC1302]
gi|300356250|gb|EFJ72120.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
198-1]
gi|300418801|gb|EFK02112.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1]
gi|300463874|gb|EFK27367.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
187-1]
gi|300531510|gb|EFK52572.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
107-1]
gi|306909325|gb|EFN39820.1| Holliday junction resolvase YqgF [Escherichia coli W]
gi|308122445|gb|EFO59707.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
145-7]
gi|312290344|gb|EFR18224.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|313647999|gb|EFS12445.1| hypothetical protein SF2457T_3597 [Shigella flexneri 2a str. 2457T]
gi|315062255|gb|ADT76582.1| predicted Holliday junction resolvase [Escherichia coli W]
gi|320174055|gb|EFW49225.1| putative Holliday junction resolvase [Shigella dysenteriae CDC
74-1112]
gi|320181046|gb|EFW55967.1| Putative Holliday junction resolvase [Shigella boydii ATCC 9905]
gi|320184296|gb|EFW59108.1| Putative Holliday junction resolvase [Shigella flexneri CDC 796-83]
gi|323154658|gb|EFZ40857.1| hypothetical protein ECEPECA14_3458 [Escherichia coli EPECa14]
gi|323162605|gb|EFZ48452.1| hypothetical protein ECE128010_1209 [Escherichia coli E128010]
gi|323167999|gb|EFZ53688.1| hypothetical protein SS53G_1715 [Shigella sonnei 53G]
gi|323173837|gb|EFZ59466.1| hypothetical protein ECLT68_2156 [Escherichia coli LT-68]
gi|323180409|gb|EFZ65961.1| hypothetical protein ECOK1180_1091 [Escherichia coli 1180]
gi|323183520|gb|EFZ68917.1| hypothetical protein ECOK1357_3299 [Escherichia coli 1357]
gi|323377161|gb|ADX49429.1| Holliday junction resolvase YqgF [Escherichia coli KO11]
gi|323946553|gb|EGB42576.1| hypothetical protein EREG_01795 [Escherichia coli H120]
gi|323960758|gb|EGB56379.1| hypothetical protein ERGG_02693 [Escherichia coli H489]
gi|323966466|gb|EGB61899.1| hypothetical protein ERJG_02055 [Escherichia coli M863]
gi|323978756|gb|EGB73837.1| hypothetical protein ERFG_00347 [Escherichia coli TW10509]
gi|324115036|gb|EGC09001.1| hypothetical protein ERIG_00364 [Escherichia fergusonii B253]
gi|325498506|gb|EGC96365.1| Holliday junction resolvase-like protein [Escherichia fergusonii
ECD227]
gi|327251717|gb|EGE63403.1| hypothetical protein ECSTEC7V_3568 [Escherichia coli STEC_7v]
gi|331058463|gb|EGI30444.1| putative Holliday junction resolvase [Escherichia coli TA143]
gi|331068524|gb|EGI39919.1| putative Holliday junction resolvase [Escherichia coli TA280]
gi|331078191|gb|EGI49397.1| putative Holliday junction resolvase [Escherichia coli H299]
gi|332086878|gb|EGI92014.1| hypothetical protein SB521682_3504 [Shigella boydii 5216-82]
gi|332087651|gb|EGI92778.1| hypothetical protein SD15574_3397 [Shigella dysenteriae 155-74]
gi|332091359|gb|EGI96447.1| hypothetical protein SB359474_3535 [Shigella boydii 3594-74]
gi|332102709|gb|EGJ06055.1| holliday junction resolvase [Shigella sp. D9]
gi|332752992|gb|EGJ83376.1| hypothetical protein SF434370_3170 [Shigella flexneri 4343-70]
gi|332753793|gb|EGJ84172.1| hypothetical protein SFK671_3523 [Shigella flexneri K-671]
gi|332754509|gb|EGJ84875.1| hypothetical protein SF274771_3535 [Shigella flexneri 2747-71]
gi|332765366|gb|EGJ95584.1| hypothetical protein SF293071_3447 [Shigella flexneri 2930-71]
gi|332999696|gb|EGK19281.1| hypothetical protein SFVA6_3843 [Shigella flexneri VA-6]
gi|333000337|gb|EGK19920.1| hypothetical protein SFK218_3952 [Shigella flexneri K-218]
gi|333000451|gb|EGK20032.1| hypothetical protein SFK272_3772 [Shigella flexneri K-272]
gi|333015023|gb|EGK34366.1| hypothetical protein SFK304_3754 [Shigella flexneri K-304]
gi|333015289|gb|EGK34631.1| hypothetical protein SFK227_3745 [Shigella flexneri K-227]
Length = 138
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|291618771|ref|YP_003521513.1| YqgF [Pantoea ananatis LMG 20103]
gi|291153801|gb|ADD78385.1| YqgF [Pantoea ananatis LMG 20103]
gi|327395104|dbj|BAK12526.1| putative Holliday junction resolvase YqgF [Pantoea ananatis
AJ13355]
Length = 138
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D GTK IG+A+ A P + + T L++ + ++GLP
Sbjct: 4 QTLLGFDFGTKSIGVAVGQQLTGSARPLSAIKAQDGTPDWLQIEKLLKEWQPDFVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P R F N + + + DERL+TV A+ L + R V
Sbjct: 64 LNMDGTEQPLTARARKFA-NRLHGRFGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122
Query: 137 DSIAAALILQEVLD 150
DS +AA+ILQ+ +
Sbjct: 123 DSQSAAIILQDWFE 136
>gi|152971900|ref|YP_001337009.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238896479|ref|YP_002921217.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
NTUH-K2044]
gi|262042599|ref|ZP_06015755.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|167012731|sp|A6TDV8|RUVX_KLEP7 RecName: Full=Putative Holliday junction resolvase
gi|150956749|gb|ABR78779.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238548799|dbj|BAH65150.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|259040033|gb|EEW41148.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 138
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D GTK IG+A+ A P P L + + + A I+GLPLNM+
Sbjct: 7 GFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V + DERL+TV A+ L + R VDS +
Sbjct: 67 GTEQPLTARARNFA-NKIHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGSVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVVILESYFEQ 136
>gi|311278135|ref|YP_003940366.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1]
gi|308747330|gb|ADO47082.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1]
Length = 138
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P L + T + +T A I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLSALKAQDGTPDWNAVEKILTEWQPDAVIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N + + V DERL+TV A+ L + R +VDS +
Sbjct: 67 GTEQPLTARARKFA-NKLHGRFGVKIELHDERLSTVEARAGLFEHGGYRALNKGRVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|254162859|ref|YP_003045967.1| Holliday junction resolvase-like protein [Escherichia coli B str.
REL606]
gi|297516337|ref|ZP_06934723.1| Holliday junction resolvase-like protein [Escherichia coli OP50]
gi|242378475|emb|CAQ33259.1| predicted Holliday junction resolvase [Escherichia coli BL21(DE3)]
gi|253974760|gb|ACT40431.1| Holliday junction resolvase-like protein [Escherichia coli B str.
REL606]
gi|253978926|gb|ACT44596.1| Holliday junction resolvase-like protein [Escherichia coli
BL21(DE3)]
Length = 138
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|148909523|gb|ABR17857.1| unknown [Picea sitchensis]
Length = 178
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
+ +D+G + +GLA+S+ A P L+RK+ ++ +L + ++ F+IG P
Sbjct: 24 LLGMDVGDRYVGLAVSNHLNEIASPHSVLIRKQSNIDSITDKLQELVRRFSLVGFVIGYP 83
Query: 77 LNMNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L + + + + FV + R + + +WDERLTT + + +L + + +
Sbjct: 84 LPLYHFQRSQAMQVKMFVEQLQKTGRFGCLNYTYWDERLTTRAVESMLKPLKIHPLQMKH 143
Query: 135 KVDSIAAALILQEVLDRIS 153
+D AA ILQ+ LD +
Sbjct: 144 MMDKFAAVGILQDFLDNLQ 162
>gi|331654461|ref|ZP_08355461.1| putative Holliday junction resolvase [Escherichia coli M718]
gi|331047843|gb|EGI19920.1| putative Holliday junction resolvase [Escherichia coli M718]
Length = 138
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|299140625|ref|ZP_07033763.1| Holliday junction resolvase [Prevotella oris C735]
gi|298577591|gb|EFI49459.1| Holliday junction resolvase [Prevotella oris C735]
Length = 144
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I SID G KR GLA++D + A+ L + L +I E + +IG P
Sbjct: 4 ILSIDYGKKRTGLAVTDSLQIIANG---LATVSTSSLIDYLKDYIAKEPVERIVIGRPTQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
+G + FV+ +P ++DER T+V A Q++ID V +K R +
Sbjct: 61 PDGRPSENLVRVEQFVNRWRKLVPNIPIEYYDERFTSVLAHQVVIDSGVKKKVRKENKGL 120
Query: 136 VDSIAAALILQEVL 149
+D I+A +ILQ+ +
Sbjct: 121 IDEISATIILQDYM 134
>gi|16130850|ref|NP_417424.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. MG1655]
gi|26249370|ref|NP_755410.1| Holliday junction resolvase-like protein [Escherichia coli CFT073]
gi|89109726|ref|AP_003506.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. W3110]
gi|91212331|ref|YP_542317.1| Holliday junction resolvase-like protein [Escherichia coli UTI89]
gi|110643098|ref|YP_670828.1| Holliday junction resolvase-like protein [Escherichia coli 536]
gi|117625176|ref|YP_854164.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1]
gi|157162408|ref|YP_001459726.1| Holliday junction resolvase-like protein [Escherichia coli HS]
gi|170018810|ref|YP_001723764.1| Holliday junction resolvase-like protein [Escherichia coli ATCC
8739]
gi|170082501|ref|YP_001731821.1| Holliday junction resolvase [Escherichia coli str. K-12 substr.
DH10B]
gi|188491785|ref|ZP_02999055.1| putative Holliday junction resolvase [Escherichia coli 53638]
gi|191171877|ref|ZP_03033423.1| putative Holliday junction resolvase [Escherichia coli F11]
gi|218559940|ref|YP_002392853.1| Holliday junction resolvase-like protein [Escherichia coli S88]
gi|218691073|ref|YP_002399285.1| Holliday junction resolvase-like protein [Escherichia coli ED1a]
gi|218696547|ref|YP_002404214.1| Holliday junction resolvase-like protein [Escherichia coli 55989]
gi|238902071|ref|YP_002927867.1| putative Holliday junction resolvase [Escherichia coli BW2952]
gi|253772213|ref|YP_003035044.1| Holliday junction resolvase-like protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|256024542|ref|ZP_05438407.1| Holliday junction resolvase-like protein [Escherichia sp. 4_1_40B]
gi|293412309|ref|ZP_06655032.1| hypothetical protein ECEG_02316 [Escherichia coli B354]
gi|300824850|ref|ZP_07104953.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
119-7]
gi|300906487|ref|ZP_07124182.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1]
gi|300921290|ref|ZP_07137659.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
115-1]
gi|300940769|ref|ZP_07155315.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1]
gi|300947679|ref|ZP_07161848.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
116-1]
gi|300954205|ref|ZP_07166670.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1]
gi|300980101|ref|ZP_07174844.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1]
gi|300995470|ref|ZP_07181118.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1]
gi|301027300|ref|ZP_07190646.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1]
gi|301027726|ref|ZP_07191036.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
196-1]
gi|301049256|ref|ZP_07196229.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
185-1]
gi|301306394|ref|ZP_07212463.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1]
gi|301327365|ref|ZP_07220615.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1]
gi|301643698|ref|ZP_07243737.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
146-1]
gi|306812147|ref|ZP_07446345.1| Holliday junction resolvase-like protein [Escherichia coli NC101]
gi|307139634|ref|ZP_07498990.1| Holliday junction resolvase-like protein [Escherichia coli H736]
gi|312972810|ref|ZP_07786983.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|331643642|ref|ZP_08344773.1| putative Holliday junction resolvase [Escherichia coli H736]
gi|331648704|ref|ZP_08349792.1| putative Holliday junction resolvase [Escherichia coli M605]
gi|331659084|ref|ZP_08360026.1| putative Holliday junction resolvase [Escherichia coli TA206]
gi|331669692|ref|ZP_08370538.1| putative Holliday junction resolvase [Escherichia coli TA271]
gi|331678941|ref|ZP_08379615.1| putative Holliday junction resolvase [Escherichia coli H591]
gi|67472397|sp|P0A8I1|RUVX_ECOLI RecName: Full=Putative Holliday junction resolvase
gi|67472398|sp|P0A8I2|RUVX_ECOL6 RecName: Full=Putative Holliday junction resolvase
gi|118597209|sp|Q0TDQ2|RUVX_ECOL5 RecName: Full=Putative Holliday junction resolvase
gi|146325571|sp|Q1R778|RUVX_ECOUT RecName: Full=Putative Holliday junction resolvase
gi|167012719|sp|A8A489|RUVX_ECOHS RecName: Full=Putative Holliday junction resolvase
gi|167012720|sp|A1AFD5|RUVX_ECOK1 RecName: Full=Putative Holliday junction resolvase
gi|189046095|sp|B1IT58|RUVX_ECOLC RecName: Full=Putative Holliday junction resolvase
gi|226725515|sp|B7MMD7|RUVX_ECO45 RecName: Full=Putative Holliday junction resolvase
gi|226725519|sp|B1XFA9|RUVX_ECODH RecName: Full=Putative Holliday junction resolvase
gi|254767515|sp|B7LFL2|RUVX_ECO55 RecName: Full=Putative Holliday junction resolvase
gi|254767516|sp|B7MZP8|RUVX_ECO81 RecName: Full=Putative Holliday junction resolvase
gi|259495702|sp|C5A0L8|RUVX_ECOBW RecName: Full=Putative Holliday junction resolvase
gi|46014935|pdb|1NMN|A Chain A, Structure Of Yqgf From Escherichia Coli, A Hypothetical
Protein
gi|46014936|pdb|1NMN|B Chain B, Structure Of Yqgf From Escherichia Coli, A Hypothetical
Protein
gi|26109778|gb|AAN81983.1|AE016766_71 Hypothetical protein yqgF [Escherichia coli CFT073]
gi|1789318|gb|AAC75986.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. MG1655]
gi|85675759|dbj|BAE77012.1| predicted Holliday junction resolvase [Escherichia coli str. K12
substr. W3110]
gi|91073905|gb|ABE08786.1| hypothetical protein UTI89_C3338 [Escherichia coli UTI89]
gi|110344690|gb|ABG70927.1| hypothetical protein YqgF [Escherichia coli 536]
gi|115514300|gb|ABJ02375.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1]
gi|157068088|gb|ABV07343.1| conserved hypothetical protein TIGR00250 [Escherichia coli HS]
gi|169753738|gb|ACA76437.1| Holliday junction resolvase YqgF [Escherichia coli ATCC 8739]
gi|169890336|gb|ACB04043.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. DH10B]
gi|188486984|gb|EDU62087.1| putative Holliday junction resolvase [Escherichia coli 53638]
gi|190907912|gb|EDV67505.1| putative Holliday junction resolvase [Escherichia coli F11]
gi|218353279|emb|CAU99238.1| Holliday junction resolvase [Escherichia coli 55989]
gi|218366709|emb|CAR04466.1| Holliday junction resolvase [Escherichia coli S88]
gi|218428637|emb|CAR09566.2| Holliday junction resolvase [Escherichia coli ED1a]
gi|222034644|emb|CAP77386.1| Holliday junction resolvase [Escherichia coli LF82]
gi|238862456|gb|ACR64454.1| predicted Holliday junction resolvase [Escherichia coli BW2952]
gi|253323257|gb|ACT27859.1| Holliday junction resolvase YqgF [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260448008|gb|ACX38430.1| Holliday junction resolvase YqgF [Escherichia coli DH1]
gi|281179958|dbj|BAI56288.1| conserved hypothetical protein [Escherichia coli SE15]
gi|284922892|emb|CBG35981.1| putative holliday junction resolvase [Escherichia coli 042]
gi|291469080|gb|EFF11571.1| hypothetical protein ECEG_02316 [Escherichia coli B354]
gi|294491308|gb|ADE90064.1| conserved hypothetical protein TIGR00250 [Escherichia coli IHE3034]
gi|299879162|gb|EFI87373.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
196-1]
gi|300298952|gb|EFJ55337.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
185-1]
gi|300304832|gb|EFJ59352.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1]
gi|300318789|gb|EFJ68573.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1]
gi|300395106|gb|EFJ78644.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1]
gi|300401730|gb|EFJ85268.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1]
gi|300409358|gb|EFJ92896.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1]
gi|300411752|gb|EFJ95062.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
115-1]
gi|300452725|gb|EFK16345.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
116-1]
gi|300454469|gb|EFK17962.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1]
gi|300522688|gb|EFK43757.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
119-7]
gi|300838389|gb|EFK66149.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1]
gi|300846049|gb|EFK73809.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1]
gi|301077900|gb|EFK92706.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
146-1]
gi|305854185|gb|EFM54623.1| Holliday junction resolvase-like protein [Escherichia coli NC101]
gi|307625477|gb|ADN69781.1| Holliday junction resolvase-like protein [Escherichia coli UM146]
gi|309703304|emb|CBJ02640.1| putative holliday junction resolvase [Escherichia coli ETEC H10407]
gi|310332752|gb|EFP99965.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|312947480|gb|ADR28307.1| Holliday junction resolvase-like protein [Escherichia coli O83:H1
str. NRG 857C]
gi|315137546|dbj|BAJ44705.1| Holliday junction resolvase-like protein [Escherichia coli DH1]
gi|315256841|gb|EFU36809.1| putative Holliday junction resolvase [Escherichia coli MS 85-1]
gi|315293937|gb|EFU53289.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
153-1]
gi|315295638|gb|EFU54961.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 16-3]
gi|315614890|gb|EFU95528.1| conserved hypothetical protein [Escherichia coli 3431]
gi|320195068|gb|EFW69697.1| Putative Holliday junction resolvase [Escherichia coli WV_060327]
gi|323188657|gb|EFZ73942.1| hypothetical protein ECRN5871_3077 [Escherichia coli RN587/1]
gi|323936048|gb|EGB32343.1| hypothetical protein ERCG_02812 [Escherichia coli E1520]
gi|323941965|gb|EGB38144.1| hypothetical protein ERDG_01740 [Escherichia coli E482]
gi|323951613|gb|EGB47488.1| hypothetical protein ERKG_02256 [Escherichia coli H252]
gi|323971704|gb|EGB66932.1| hypothetical protein ERHG_02242 [Escherichia coli TA007]
gi|324011800|gb|EGB81019.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 60-1]
gi|324119744|gb|EGC13624.1| hypothetical protein ERBG_00332 [Escherichia coli E1167]
gi|330908984|gb|EGH37498.1| putative Holliday junction resolvase [Escherichia coli AA86]
gi|331037113|gb|EGI09337.1| putative Holliday junction resolvase [Escherichia coli H736]
gi|331042451|gb|EGI14593.1| putative Holliday junction resolvase [Escherichia coli M605]
gi|331053666|gb|EGI25695.1| putative Holliday junction resolvase [Escherichia coli TA206]
gi|331063360|gb|EGI35273.1| putative Holliday junction resolvase [Escherichia coli TA271]
gi|331073771|gb|EGI45092.1| putative Holliday junction resolvase [Escherichia coli H591]
gi|332344848|gb|AEE58182.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 138
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|226500782|ref|NP_001149481.1| holliday junction resolvase [Zea mays]
gi|195627468|gb|ACG35564.1| holliday junction resolvase [Zea mays]
Length = 235
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 11/143 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R GLAI GR PRP V R + + L LL + IIGLP++
Sbjct: 76 GVDLGDARTGLAI---GRGITFPRPLTVLRLRGQKLELALLDVARQQEADELIIGLPVSA 132
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQKVD 137
+GSE P+ + R+ V + + + DE T+ A +I V + R K D
Sbjct: 133 DGSETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALDYMISRGVKKSARDTKSD 192
Query: 138 SIAAALILQEVLDRISFLESSKG 160
+ AA +IL+ F S +G
Sbjct: 193 AYAAVMILKRY-----FTSSGRG 210
>gi|157879567|pdb|1OVQ|A Chain A, Solution Structure Of The Hypothetical Protein Yqgf From
Escherichia Coli
Length = 138
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|284052056|ref|ZP_06382266.1| Holliday junction resolvase-like protein [Arthrospira platensis
str. Paraca]
gi|291569994|dbj|BAI92266.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 148
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G +RIG+A D A +VR + + I + ++GLP N
Sbjct: 14 GLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLAQFQAIIQQRQVQILVVGLPYLSN 73
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G G + + + + + + +P ++DERLT++ A+++L + + +D A
Sbjct: 74 GELGTQARQIQKYTRRL-QKSLALPVEYFDERLTSIEAEEMLKGQKIPLSENKALIDRKA 132
Query: 141 AALILQEVLDR 151
AALILQ+ LD+
Sbjct: 133 AALILQQWLDQ 143
>gi|260578809|ref|ZP_05846716.1| Holliday junction resolvase [Corynebacterium jeikeium ATCC 43734]
gi|258603107|gb|EEW16377.1| Holliday junction resolvase [Corynebacterium jeikeium ATCC 43734]
Length = 155
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79
+D+GT RIG+AISDP A P V+ ++ ++ I EN + ++GLP+ +
Sbjct: 19 GLDVGTVRIGVAISDPDCILATPVE-TVQATADDADVQRVAEICRENFVVEIVVGLPVAL 77
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G+ + F + + +P DER++T++A Q V+ KK +K+D
Sbjct: 78 RGNHTQSTLNAEEFARLVKEELPDIPLRMVDERMSTMAATQAFHASGVNSKKGRKKIDQA 137
Query: 140 AAALILQEVLD 150
AA ILQ LD
Sbjct: 138 AAVHILQGWLD 148
>gi|81301207|ref|YP_401415.1| Holliday junction resolvase-like protein [Synechococcus elongatus
PCC 7942]
gi|146325618|sp|Q31KJ1|RUVX_SYNE7 RecName: Full=Putative Holliday junction resolvase
gi|81170088|gb|ABB58428.1| Holliday junction resolvase YqgF [Synechococcus elongatus PCC 7942]
Length = 149
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P +D+G +RIG+A D +VR+ + + + +IG
Sbjct: 2 PYYAALGLDVGRRRIGVAGCDRLGITVQGLTTIVRRDFASDVAAISAIAKERQVELLVIG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +M+GS G + T+ F + + + +P + DERLT+ A++++ S +
Sbjct: 62 LPYSMDGSLGSQAKQTQRFA-TRLSKALQLPITYVDERLTSFEAEEMIKAEGRSPSRDKG 120
Query: 135 KVDSIAAALILQEVLD 150
+D AAALILQ+ LD
Sbjct: 121 AIDRKAAALILQQWLD 136
>gi|225024365|ref|ZP_03713557.1| hypothetical protein EIKCOROL_01240 [Eikenella corrodens ATCC
23834]
gi|224942862|gb|EEG24071.1| hypothetical protein EIKCOROL_01240 [Eikenella corrodens ATCC
23834]
Length = 148
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + D G RIG+A D AHP + + + + + + F++G
Sbjct: 5 PHGTTLAFDFGETRIGVAQGDAEVGIAHPLATISGEGNDKKFAAIAALVAEWRPVQFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +GSE R F H + R +P + DERLT++ A ++L + +K+
Sbjct: 65 LPFSTDGSEHEMTRLARKFGHRLNGR-FGLPVYWADERLTSLYATELLNQTGLHGRKQKP 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQGFFE 139
>gi|157960959|ref|YP_001500993.1| Holliday junction resolvase-like protein [Shewanella pealeana ATCC
700345]
gi|157845959|gb|ABV86458.1| Holliday junction resolvase YqgF [Shewanella pealeana ATCC 700345]
Length = 141
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73
++ + D GTK IG+AI A RP L K V E+ + IT ++
Sbjct: 3 DKSVLGFDYGTKSIGIAIGQ--ELTASARPLLSIKAVDGIPRWEEIGALITEWKPDLVVV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+G+E R F N I + V DERLTT A+ L +M +
Sbjct: 61 GLPLNMDGTEQEMTQRARKFA-NRISGRFGVKVETQDERLTTADAKARLFEMGGYKALTK 119
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+VD+++A LI++ S+ E+ G
Sbjct: 120 GQVDAMSAVLIVE------SYFENQYG 140
>gi|225873782|ref|YP_002755241.1| conserved hypothetical protein TIGR00250 [Acidobacterium capsulatum
ATCC 51196]
gi|225794196|gb|ACO34286.1| conserved hypothetical protein TIGR00250 [Acidobacterium capsulatum
ATCC 51196]
Length = 146
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G +R+G+A+SD A P LVR Q L + ++G PL M+
Sbjct: 2 ALDVGDRRVGVAVSDELGLTAQPVLTLVRTNRKQDMKSLGRLLRRFGCTEVVVGNPLYMS 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G P+ +AF + + +P WDERLTT A + L + + VD +A
Sbjct: 62 GDISPQALKAQAFA-AWVREEFGLPVHLWDERLTTTEAHRHLHAAGRPGSEHREVVDQVA 120
Query: 141 AALILQEVL 149
A LIL L
Sbjct: 121 AVLILDGFL 129
>gi|82778279|ref|YP_404628.1| Holliday junction resolvase-like protein [Shigella dysenteriae
Sd197]
gi|209920408|ref|YP_002294492.1| Holliday junction resolvase-like protein [Escherichia coli SE11]
gi|293416210|ref|ZP_06658850.1| hypothetical protein ECDG_03813 [Escherichia coli B185]
gi|309785223|ref|ZP_07679854.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|146325607|sp|Q32C18|RUVX_SHIDS RecName: Full=Putative Holliday junction resolvase
gi|226725521|sp|B6I787|RUVX_ECOSE RecName: Full=Putative Holliday junction resolvase
gi|81242427|gb|ABB63137.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|209913667|dbj|BAG78741.1| conserved hypothetical protein [Escherichia coli SE11]
gi|291432399|gb|EFF05381.1| hypothetical protein ECDG_03813 [Escherichia coli B185]
gi|308926343|gb|EFP71819.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|320202613|gb|EFW77183.1| Putative Holliday junction resolvase [Escherichia coli EC4100B]
gi|324017221|gb|EGB86440.1| hypothetical protein HMPREF9542_04132 [Escherichia coli MS 117-3]
Length = 138
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVDVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|254253087|ref|ZP_04946405.1| hypothetical protein BDAG_02337 [Burkholderia dolosa AUO158]
gi|124895696|gb|EAY69576.1| hypothetical protein BDAG_02337 [Burkholderia dolosa AUO158]
Length = 149
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 7/139 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G KRIG+AI + R A P L R+ + +LL+ + A ++GLP+
Sbjct: 13 AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPD---ALVVGLPM 69
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ + F N ++ + +P + DER ++V A+ L + NV + R+ +D
Sbjct: 70 HPDGTPHDMTQQAKRFG-NQLNGRFGLPVAWVDERYSSVEAEAGLRERNVRGRARVDMLD 128
Query: 138 SIAAALILQEVLDRISFLE 156
+ AA +ILQ+ LD++S E
Sbjct: 129 AEAARVILQQYLDQLSDHE 147
>gi|882478|gb|AAA69116.1| ORF_o180; was also ORF_o62p before splice [Escherichia coli str.
K-12 substr. MG1655]
Length = 180
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 49 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 108
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 109 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 167
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 168 AVIILESYFEQ 178
>gi|331703303|ref|YP_004399990.1| Holliday junction resolvase [Mycoplasma mycoides subsp. capri LC
str. 95010]
gi|328801858|emb|CBW54011.1| Conserved hypothetical protein, probable Holliday junction
resolvase [Mycoplasma mycoides subsp. capri LC str.
95010]
Length = 143
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 7/139 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q I ++D+G+K IGLA S + Q +L S++ N + ++G P
Sbjct: 3 QSIIALDIGSKTIGLAYSSGVIASSLDTIRFEEYNFDQGLKQLDSYLKKYNPSIIVVGYP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-----VFWDERLTTVSAQQILIDMNVSRKK 131
NMN + G R + +D +Y F + DER TT A+ ILI N++R+K
Sbjct: 63 KNMNNTIGERAEMVDYVIEMFLD--MYKNFNKDQIIKIDERRTTKIAKNILIQANLTREK 120
Query: 132 RIQKVDSIAAALILQEVLD 150
+ + DS+AA LIL+ L+
Sbjct: 121 QKKYKDSLAAQLILELYLE 139
>gi|172036395|ref|YP_001802896.1| Holliday junction resolvase-like protein [Cyanothece sp. ATCC
51142]
gi|254767512|sp|B1WX86|RUVX_CYAA5 RecName: Full=Putative Holliday junction resolvase
gi|171697849|gb|ACB50830.1| putative holliday junction resolvase, YqgF family [Cyanothece sp.
ATCC 51142]
Length = 143
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KRIG+A D A + R+ Q +L + + + +IGLP +M+
Sbjct: 8 GLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDVQQLEALVKEREVQLLVIGLPYSMD 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ G + + F + + +P + DERLT+V A+ L + VD +A
Sbjct: 68 GTIGFQAKKVQKFAKRL-STALELPIEYIDERLTSVEAETHLKSQKKYSRYNKGLVDRLA 126
Query: 141 AALILQEVLDR 151
A +ILQ+ LD+
Sbjct: 127 ATIILQQWLDQ 137
>gi|225010668|ref|ZP_03701138.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-3C]
gi|225005221|gb|EEG43173.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-3C]
Length = 137
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 5/137 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D GTKR G+A++DP + A ++ + L S++ +E ++ ++G P
Sbjct: 4 IIALDFGTKRTGVAVTDPMQIIASGLDTVLTPDLISF---LKSYMVSEPVSTIVLGEPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
M+ + + AF+ + + DER T+ A Q +I + +KKR +K V
Sbjct: 61 MDNTPSESEAAIGAFILTLEAEFPDIEIARQDERFTSKMAVQAMIVGGMKKKKRQEKGRV 120
Query: 137 DSIAAALILQEVLDRIS 153
D I+A LILQ L+RIS
Sbjct: 121 DQISATLILQAYLNRIS 137
>gi|313886409|ref|ZP_07820129.1| RNAse H domain protein, YqgF family [Porphyromonas asaccharolytica
PR426713P-I]
gi|312924125|gb|EFR34914.1| RNAse H domain protein, YqgF family [Porphyromonas asaccharolytica
PR426713P-I]
Length = 141
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
I +ID GTKR GLA++DP P + T L L+ ++ E + I+G P
Sbjct: 4 ILAIDYGTKRTGLAVTDP----LQITPGALDTVPTHQLLNYLADYLGREKVETIILGKPT 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
M+ + + +A + + + DER T+V AQQ + + + +++R +
Sbjct: 60 QMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRQRDKG 119
Query: 136 -VDSIAAALILQEVLDRISFLE 156
VD ++A +ILQ L+ +S L
Sbjct: 120 LVDRVSATIILQSYLESLSMLH 141
>gi|254303693|ref|ZP_04971051.1| possible Holliday junction resolvase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323885|gb|EDK89135.1| possible Holliday junction resolvase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 138
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 8/134 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79
++D+G RIG+A SD A P + RKK+ +++ ++ I EN I+ G+P ++
Sbjct: 6 ALDIGDVRIGVARSDIMGIIASPLETINRKKIK--SVKRIAEICKENDTNLIVVGIPKSL 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136
+G E + R ++ + + + DER +TV A IL ++N + K+++ V
Sbjct: 64 DGEEKRQAEKVREYIEKLKREIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV--V 121
Query: 137 DSIAAALILQEVLD 150
D +AA++ILQ LD
Sbjct: 122 DKVAASIILQTYLD 135
>gi|262038171|ref|ZP_06011568.1| putative Holliday junction resolvase [Leptotrichia goodfellowii
F0264]
gi|261747819|gb|EEY35261.1| putative Holliday junction resolvase [Leptotrichia goodfellowii
F0264]
Length = 138
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALELLSFITTENIAAFIIGLPLN 78
+D+G RIG+A SDP A + R V Q E+LS T+ I A GLP +
Sbjct: 6 GLDIGDVRIGVAKSDPLGILATGLEVIDRNTVNPVQRIKEILSDEGTKKIVA---GLPKS 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKRIQK 135
++G++ + FV + + + + DER TT A+ L N S+ K+R +
Sbjct: 63 LDGTKKRQAEKVEEFVAELKESIPDIEVIMVDERYTTTEAEHYL--KNYSKKNGKERRKV 120
Query: 136 VDSIAAALILQEVLDRI 152
VD +AA++ILQ+ LDRI
Sbjct: 121 VDMVAASIILQKYLDRI 137
>gi|218701659|ref|YP_002409288.1| Holliday junction resolvase-like protein [Escherichia coli IAI39]
gi|226725517|sp|B7NI12|RUVX_ECO7I RecName: Full=Putative Holliday junction resolvase
gi|218371645|emb|CAR19484.1| Holliday junction resolvase [Escherichia coli IAI39]
Length = 138
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + + DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGIEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|15803488|ref|NP_289521.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
EDL933]
gi|15833079|ref|NP_311852.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. Sakai]
gi|168747559|ref|ZP_02772581.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4113]
gi|168753901|ref|ZP_02778908.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4401]
gi|168760091|ref|ZP_02785098.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4501]
gi|168766956|ref|ZP_02791963.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4486]
gi|168773412|ref|ZP_02798419.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4196]
gi|168781808|ref|ZP_02806815.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4076]
gi|168785807|ref|ZP_02810814.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC869]
gi|168797524|ref|ZP_02822531.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC508]
gi|195937087|ref|ZP_03082469.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. EC4024]
gi|208805896|ref|ZP_03248233.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4206]
gi|208811883|ref|ZP_03253212.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4045]
gi|208820347|ref|ZP_03260667.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4042]
gi|209396593|ref|YP_002272429.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4115]
gi|217327641|ref|ZP_03443724.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
TW14588]
gi|254794901|ref|YP_003079738.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. TW14359]
gi|261226261|ref|ZP_05940542.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
str. FRIK2000]
gi|261256481|ref|ZP_05949014.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
str. FRIK966]
gi|291284270|ref|YP_003501088.1| putative Holliday junction resolvase [Escherichia coli O55:H7 str.
CB9615]
gi|32130044|sp|Q8XCV0|RUVX_ECO57 RecName: Full=Putative Holliday junction resolvase
gi|226725516|sp|B5YQE7|RUVX_ECO5E RecName: Full=Putative Holliday junction resolvase
gi|12517495|gb|AAG58080.1|AE005525_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13363297|dbj|BAB37248.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187770925|gb|EDU34769.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4196]
gi|188017800|gb|EDU55922.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4113]
gi|189000577|gb|EDU69563.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4076]
gi|189358781|gb|EDU77200.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4401]
gi|189363715|gb|EDU82134.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4486]
gi|189369432|gb|EDU87848.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4501]
gi|189374231|gb|EDU92647.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC869]
gi|189379713|gb|EDU98129.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC508]
gi|208725697|gb|EDZ75298.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4206]
gi|208733160|gb|EDZ81847.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4045]
gi|208740470|gb|EDZ88152.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4042]
gi|209157993|gb|ACI35426.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4115]
gi|209760068|gb|ACI78346.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760070|gb|ACI78347.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760072|gb|ACI78348.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760074|gb|ACI78349.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760076|gb|ACI78350.1| hypothetical protein ECs3825 [Escherichia coli]
gi|217320008|gb|EEC28433.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
TW14588]
gi|254594301|gb|ACT73662.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
str. TW14359]
gi|290764143|gb|ADD58104.1| Putative Holliday junction resolvase [Escherichia coli O55:H7 str.
CB9615]
gi|320189297|gb|EFW63956.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC1212]
gi|320640595|gb|EFX10134.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. G5101]
gi|320645842|gb|EFX14827.1| Holliday junction resolvase-like protein [Escherichia coli O157:H-
str. 493-89]
gi|320651142|gb|EFX19582.1| Holliday junction resolvase-like protein [Escherichia coli O157:H-
str. H 2687]
gi|320656638|gb|EFX24534.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320662157|gb|EFX29558.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
str. USDA 5905]
gi|320667233|gb|EFX34196.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. LSU-61]
gi|326338964|gb|EGD62779.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
1044]
gi|326343155|gb|EGD66923.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
1125]
Length = 138
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R K+DS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKIDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|161831062|ref|YP_001597829.1| Holliday junction resolvase-like protein [Coxiella burnetii RSA
331]
gi|215919336|ref|NP_821064.2| hypothetical protein CBU_2094 [Coxiella burnetii RSA 493]
gi|218511772|sp|Q83A17|RUVX_COXBU RecName: Full=Putative Holliday junction resolvase
gi|226725541|sp|A9NBU2|RUVX_COXBR RecName: Full=Putative Holliday junction resolvase
gi|161762929|gb|ABX78571.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA
331]
gi|206584221|gb|AAO91578.2| hypothetical cytosolic protein [Coxiella burnetii RSA 493]
Length = 141
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 15 PNQPIASI--DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
PNQ + ++ D G KRIG+A+ A+ L + ++ I T + +
Sbjct: 2 PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVLV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P NM+GSE + R F + + +P DERLTT+ A++ + ++ KR
Sbjct: 62 VGIPYNMDGSEQTLTFAARKFARKL-QMRFGLPVSMVDERLTTIEAKRQWYEQGLT--KR 118
Query: 133 IQKVDSIAAALILQEVL 149
Q +D+ AA LIL++ L
Sbjct: 119 PQHLDNYAAKLILEQWL 135
>gi|30249631|ref|NP_841701.1| Holliday junction resolvase-like protein [Nitrosomonas europaea
ATCC 19718]
gi|62901022|sp|Q82U42|RUVX_NITEU RecName: Full=Putative Holliday junction resolvase
gi|30138994|emb|CAD85578.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
Length = 148
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
+ + D G +RIG+AI + R AHP + + +T+ E ++ I ++GL +
Sbjct: 12 VLAFDFGKRRIGVAIGEHELRMAHPLT-TIDQSMTRPRFEKIAELIEAWQPVLLVVGLSV 70
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+E R F + + + +P DER TTV A+ +L ++ V+ KK+ +D
Sbjct: 71 HADGTEHEITRLCRRFARRL-EGRFRIPVALADERYTTVIARSVLEEVGVTGKKQRPMLD 129
Query: 138 SIAAALILQEVLD 150
IAA ILQ D
Sbjct: 130 QIAAQHILQTYFD 142
>gi|302335909|ref|YP_003801116.1| Holliday junction resolvase YqgF [Olsenella uli DSM 7084]
gi|301319749|gb|ADK68236.1| Holliday junction resolvase YqgF [Olsenella uli DSM 7084]
Length = 137
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G R+G+A SD A P L ++V + + + G PL M
Sbjct: 5 ALDIGEVRVGIAASDASGAVASPVRVLPAQEVLSCSRTFRRILEDYEPDVLVCGRPLTMA 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G +GP+ I +P F DERL++ A++IL + S + +VD +A
Sbjct: 65 GEDGPQADRVMGQARR-IATSCDLPLEFADERLSSQEAKRILREEGYSERDMRGRVDMVA 123
Query: 141 AALILQEVLD 150
A+L LQ LD
Sbjct: 124 ASLFLQAWLD 133
>gi|293610120|ref|ZP_06692421.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827352|gb|EFF85716.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 146
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI +P P V K +LL + F++GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESTNPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + + + DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFARR-LRHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQ 146
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQ 135
>gi|189466359|ref|ZP_03015144.1| hypothetical protein BACINT_02734 [Bacteroides intestinalis DSM
17393]
gi|189434623|gb|EDV03608.1| hypothetical protein BACINT_02734 [Bacteroides intestinalis DSM
17393]
Length = 140
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
I +ID G KR G+A+SD + A+ T ELL+FI E + ++G
Sbjct: 4 ILAIDYGKKRTGIAVSDTLQMIANGL-------TTVPTHELLAFILDYVGKEPVERILVG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + FV + + +P + DER T+V A + + + + +K R
Sbjct: 57 LPKQMNNEASENMKRIEPFVRLLKKKLPEMPVEYVDERFTSVLAHRTMREAGLKKKDRQN 116
Query: 135 K--VDSIAAALILQEVLDRISFL 155
K VD I+A +ILQ L+ F+
Sbjct: 117 KALVDEISATIILQSYLENKRFI 139
>gi|170698781|ref|ZP_02889845.1| Holliday junction resolvase YqgF [Burkholderia ambifaria IOP40-10]
gi|170136338|gb|EDT04602.1| Holliday junction resolvase YqgF [Burkholderia ambifaria IOP40-10]
Length = 149
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 7/139 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G KRIG+AI + R A P L R+ + +LL+ + A ++GLP+
Sbjct: 13 AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPD---ALVVGLPM 69
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ + F N ++ + +P + DER ++V A+ L + NV + R + +D
Sbjct: 70 HPDGTPHEMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEMLD 128
Query: 138 SIAAALILQEVLDRISFLE 156
+ AA +ILQ+ LD++S E
Sbjct: 129 AEAARVILQQYLDQLSDHE 147
>gi|146293776|ref|YP_001184200.1| Holliday junction resolvase-like protein [Shewanella putrefaciens
CN-32]
gi|145565466|gb|ABP76401.1| Holliday junction resolvase YqgF [Shewanella putrefaciens CN-32]
Length = 141
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 31/150 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
++ + D GTK IG+AI +++T +A LLS + I +
Sbjct: 3 SKTVLGFDFGTKSIGVAIG---------------QEITASATPLLSLKAVDGIPNWDQIG 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E H R F N I+ K V V DERLTT A+
Sbjct: 48 DLIKEWQPDLVVVGLPLNMDGTEQDMTHRARKFA-NRINAKFGVKIVTQDERLTTTDAKA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L ++ + +VD+++A LI++ +
Sbjct: 107 RLFELGGFKALTKGQVDAVSAVLIIESYFE 136
>gi|42560803|ref|NP_975254.1| hypothetical protein MSC_0255 [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|313665149|ref|YP_004047020.1| RNAse YqgF [Mycoplasma leachii PG50]
gi|62900983|sp|Q6MTZ0|RUVX_MYCMS RecName: Full=Putative Holliday junction resolvase
gi|42492299|emb|CAE76896.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|301320708|gb|ADK69351.1| RNAse YqgF [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
gi|312949870|gb|ADR24466.1| RNAse YqgF [Mycoplasma leachii PG50]
Length = 143
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q I ++D+G+K IGLA S + Q +L S++ N ++G P
Sbjct: 3 QSIIALDIGSKTIGLAYSSGVIASSLDTIRFEEYNFDQGLRQLESYLKKYNPTIIVVGYP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-----VFWDERLTTVSAQQILIDMNVSRKK 131
NMN + G R + +D +Y F + DER TT A+ ILI N++R+K
Sbjct: 63 KNMNNTIGERAEMVDYVIEMFLD--MYKNFNKDQIIRIDERRTTKIAKNILIQANLTREK 120
Query: 132 RIQKVDSIAAALILQEVLD 150
+ + DS+AA LIL+ L+
Sbjct: 121 QKKYKDSLAAQLILELYLE 139
>gi|324005505|gb|EGB74724.1| hypothetical protein HMPREF9532_04857 [Escherichia coli MS 57-2]
Length = 138
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R K+DS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKIDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|237706398|ref|ZP_04536879.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|226899438|gb|EEH85697.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|315289503|gb|EFU48898.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
110-3]
gi|323957327|gb|EGB53049.1| hypothetical protein ERLG_01394 [Escherichia coli H263]
Length = 138
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + + DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGIEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|326329807|ref|ZP_08196127.1| putative Holliday junction resolvase [Nocardioidaceae bacterium
Broad-1]
gi|325952393|gb|EGD44413.1| putative Holliday junction resolvase [Nocardioidaceae bacterium
Broad-1]
Length = 156
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-----NIAAFIIGL 75
+D G RIG+A SDP A P L K + L L I E + ++GL
Sbjct: 8 GLDPGDARIGVARSDPTGFLATP---LETVKKGRGDLARLQAIVAEIGEESTMLEVVVGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P ++ G E P R F ++ R VP DERLTTVSA+ +L D + R
Sbjct: 65 PRSLKGGENPATAKVRDFAASLARRVAPVPVRLVDERLTTVSAEAMLRDRGRKGQDRRAV 124
Query: 136 VDSIAAALILQEVLD 150
VD AA +ILQ LD
Sbjct: 125 VDMAAAVVILQHALD 139
>gi|152977888|ref|YP_001343517.1| Holliday junction resolvase-like protein [Actinobacillus
succinogenes 130Z]
gi|171472921|sp|A6VKT5|RUVX_ACTSZ RecName: Full=Putative Holliday junction resolvase
gi|150839611|gb|ABR73582.1| Holliday junction resolvase YqgF [Actinobacillus succinogenes 130Z]
Length = 140
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 31/147 (21%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
+ + D GTK IG A+ + +T TA L +F + I +
Sbjct: 5 VIAFDFGTKSIGCAVG---------------QSITGTAQSLPAFKAQDGIPDWADIEKCL 49
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLPLNM+G+E R F H + R V + DERLTT A+ +
Sbjct: 50 KEWKPDMVVVGLPLNMDGTEQDLTRRARKFGHRLNGR-FGVKVAWQDERLTTTQARTEIF 108
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
+ R + KVDSI+A LIL+ +
Sbjct: 109 ERGGYRALKKGKVDSISACLILESWFE 135
>gi|32490913|ref|NP_871167.1| hypothetical protein WGLp164 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|32130024|sp|Q8D337|RUVX_WIGBR RecName: Full=Putative Holliday junction resolvase
gi|25166119|dbj|BAC24310.1| yqgF [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 144
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N + S D GTK IG+AI + P + K ++ + I I+GL
Sbjct: 5 NNLLISFDFGTKNIGVAIGQMKTNTSKPLESVSYVKGVPNWGKINNIILLWEPKYIIVGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GS + F + K ++P + DERLTT+ A+ +L + + +
Sbjct: 65 PLNMDGSYQTSTIKAKKFAKQL-RNKFFMPVMMHDERLTTIEAKSVLFKKYGYKGLKKKL 123
Query: 136 VDSIAAALILQEVLDRISF 154
+DS +A +IL ++ I F
Sbjct: 124 IDSESAVIILDSWMNSIYF 142
>gi|296114061|ref|YP_003627999.1| putative holliday junction resolvase [Moraxella catarrhalis RH4]
gi|295921755|gb|ADG62106.1| putative holliday junction resolvase [Moraxella catarrhalis RH4]
gi|326559452|gb|EGE09875.1| putative Holliday junction resolvase [Moraxella catarrhalis 7169]
gi|326561286|gb|EGE11645.1| putative Holliday junction resolvase [Moraxella catarrhalis
46P47B1]
gi|326565174|gb|EGE15365.1| putative Holliday junction resolvase [Moraxella catarrhalis
103P14B1]
gi|326566128|gb|EGE16285.1| putative Holliday junction resolvase [Moraxella catarrhalis BC1]
gi|326567831|gb|EGE17935.1| putative Holliday junction resolvase [Moraxella catarrhalis
12P80B1]
gi|326568167|gb|EGE18249.1| putative Holliday junction resolvase [Moraxella catarrhalis BC8]
gi|326572195|gb|EGE22191.1| putative Holliday junction resolvase [Moraxella catarrhalis BC7]
gi|326572810|gb|EGE22795.1| putative Holliday junction resolvase [Moraxella catarrhalis CO72]
gi|326573746|gb|EGE23704.1| putative Holliday junction resolvase [Moraxella catarrhalis O35E]
gi|326574629|gb|EGE24565.1| putative Holliday junction resolvase [Moraxella catarrhalis
101P30B1]
Length = 158
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D G K++G+A+ + A P L LL I I ++GLPLNM+
Sbjct: 9 ALDYGVKKMGMALGNSITHNARPFDILAMNNGQPDWDNLLGIIEHWGIDRVLVGLPLNMD 68
Query: 81 GSEG---PRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
G+E R H R H + +R+ V +DERL++ A+ I +D N + +
Sbjct: 69 GTESMLTKRAHKFARRLAHRLGERRQAVSVFIYDERLSSKEAKMIALD-NGWIASSSEPI 127
Query: 137 DSIAAALILQ 146
D IAA L+L
Sbjct: 128 DDIAACLLLD 137
>gi|120598152|ref|YP_962726.1| Holliday junction resolvase-like protein [Shewanella sp. W3-18-1]
gi|120558245|gb|ABM24172.1| Holliday junction resolvase YqgF [Shewanella sp. W3-18-1]
gi|319427148|gb|ADV55222.1| Holliday junction resolvase YqgF [Shewanella putrefaciens 200]
Length = 141
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 31/149 (20%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF----- 71
+ + D GTK IG+AI +++T +A LLS + I +
Sbjct: 4 KTVLGFDFGTKSIGVAIG---------------QEITASATPLLSLKAVDGIPNWDQIGD 48
Query: 72 ----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
++GLPLNM+G+E H R F N I+ K V V DERLTT A+
Sbjct: 49 LIKEWQPDLVVVGLPLNMDGTEQDMTHRARKFA-NRINAKFGVKIVTQDERLTTTDAKAR 107
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L ++ + +VD+++A LI++ +
Sbjct: 108 LFELGGFKALTKGQVDAVSAVLIIESYFE 136
>gi|115350792|ref|YP_772631.1| Holliday junction resolvase-like protein [Burkholderia ambifaria
AMMD]
gi|172059815|ref|YP_001807467.1| Holliday junction resolvase-like protein [Burkholderia ambifaria
MC40-6]
gi|122323878|sp|Q0BHS6|RUVX_BURCM RecName: Full=Putative Holliday junction resolvase
gi|226725493|sp|B1YU28|RUVX_BURA4 RecName: Full=Putative Holliday junction resolvase
gi|115280780|gb|ABI86297.1| Holliday junction resolvase YqgF [Burkholderia ambifaria AMMD]
gi|171992332|gb|ACB63251.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MC40-6]
Length = 149
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
D G KRIG+AI + R A P L R+ + +LL+ + A ++GLP+
Sbjct: 13 GFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPD---ALVVGLPM 69
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ + F N ++ + +P + DER ++V A+ L + NV + R + +D
Sbjct: 70 HPDGTPHEMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEMLD 128
Query: 138 SIAAALILQEVLDRISFLE 156
+ AA +ILQ+ LD++S E
Sbjct: 129 AEAARVILQQYLDQLSDHE 147
>gi|240949410|ref|ZP_04753751.1| Holliday junction resolvase-like protein [Actinobacillus minor
NM305]
gi|240296159|gb|EER46815.1| Holliday junction resolvase-like protein [Actinobacillus minor
NM305]
Length = 140
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GT IG A+ A P + ++ I ++GLPLN
Sbjct: 5 VLAFDFGTYSIGCAVGQSITGTAQGLPAFKAQDGIPDWTQIEKVIQEWQPDVLVVGLPLN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E P + F N ++ + +P DERLTTV A+ + + + KVD+
Sbjct: 65 MDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKGKVDA 123
Query: 139 IAAALILQEVLDRIS 153
I+A LIL+ + S
Sbjct: 124 ISACLILESWFENQS 138
>gi|294634382|ref|ZP_06712919.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC
23685]
gi|291092190|gb|EFE24751.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC
23685]
Length = 140
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 31/145 (21%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
+ D GT+ IG AI +++T +A L SF E I +
Sbjct: 8 AFDFGTRSIGCAIG---------------QELTGSARPLQSFKANEGIPDWQQIEKVLRE 52
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
++GLPLNM+GSE P R F N + + V DERL+TV A+ L
Sbjct: 53 WQPDLVVVGLPLNMDGSEQPLTQLARKFA-NRLHGRFGVQIALHDERLSTVEARAHLFAD 111
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
R +VD+ +AALIL+ D
Sbjct: 112 GGYRALEKGRVDAASAALILESWFD 136
>gi|163840720|ref|YP_001625125.1| hypothetical protein RSal33209_1978 [Renibacterium salmoninarum
ATCC 33209]
gi|162954196|gb|ABY23711.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
33209]
Length = 169
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI-IGLPLNM 79
+D+GT R+G+A+ DP A P + R + L ++ E A I +GLP +
Sbjct: 14 GVDVGTVRVGVAVCDPDGILATPLRAVQRDAKRNSDLRIIVKEALERDAITIYVGLPQTL 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
G+E RA + D V DERL++VSA Q L ++ +++ +
Sbjct: 74 RGTESGSAELARAIAGQLADLLVQSDSAAEVRLIDERLSSVSAHQQLRSAGMAGREQRKV 133
Query: 136 VDSIAAALILQEVLDRISFLESSKG 160
+D +AAA ILQ L+ +E S+G
Sbjct: 134 IDQVAAAGILQHALE----MEKSRG 154
>gi|16332240|ref|NP_442968.1| Holliday junction resolvase-like-protein [Synechocystis sp. PCC
6803]
gi|6226451|sp|P74662|RUVX_SYNY3 RecName: Full=Putative Holliday junction resolvase
gi|1653870|dbj|BAA18780.1| sll1547 [Synechocystis sp. PCC 6803]
Length = 152
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KRIG+A D A +VR Q ++ + N+ ++GLP M
Sbjct: 9 GLDVGRKRIGVAGCDGTGLIATGITTIVRSSYDQDIAQIKQLVEERNVNLLVVGLPYTMA 68
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK----- 135
G G + + F + + ++++P + DERL++V A+ L +KR
Sbjct: 69 GEIGSQAKQVQKFARRVAE-QLHLPLEYMDERLSSVEAENQL-----KARKRFSSYDKGL 122
Query: 136 VDSIAAALILQEVLD-RISFLESS 158
+D AA +ILQ+ LD R S L+
Sbjct: 123 IDQQAAEIILQQWLDLRRSHLQEG 146
>gi|332299917|ref|YP_004441838.1| Holliday junction resolvase [Porphyromonas asaccharolytica DSM
20707]
gi|332176980|gb|AEE12670.1| Holliday junction resolvase [Porphyromonas asaccharolytica DSM
20707]
Length = 141
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
I +ID GTKR GLA++DP P + T L L+ ++ E + ++G P
Sbjct: 4 ILAIDYGTKRTGLAVTDP----LQITPGALDTVPTHQLLNYLADYLGREKVETIVLGKPT 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
M+ + + +A + + + DER T+V AQQ + + + +++R +
Sbjct: 60 QMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRQRDKG 119
Query: 136 -VDSIAAALILQEVLDRISFLE 156
VD ++A +ILQ L+ +S L
Sbjct: 120 LVDRVSATIILQSYLESLSMLH 141
>gi|26554307|ref|NP_758241.1| hypothetical protein MYPE8530 [Mycoplasma penetrans HF-2]
gi|32130033|sp|Q8EUR7|RUVX_MYCPE RecName: Full=Putative Holliday junction resolvase
gi|26454316|dbj|BAC44645.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
Length = 142
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---LLSFITTENIAAFI 72
N I +ID GTK IG AI+D P ++T L+ +L + ENI +
Sbjct: 5 NSKILAIDFGTKIIGTAINDINLNLCLPYC-----EITNNELKFKKILEIVEEENIKEIV 59
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
IG P N R F + + + + + F+DE +T S+++ L++ NV
Sbjct: 60 IGFPKTQNSYVSERHQLIIDFKNQLSELLKNKNIEICFFDESYSTKSSKESLMNFNVKTS 119
Query: 131 KRIQKVDSIAAALILQEVL 149
K + D IAA++IL+ L
Sbjct: 120 KLKKNKDMIAASIILENYL 138
>gi|256826955|ref|YP_003150914.1| hypothetical protein Ccur_05110 [Cryptobacterium curtum DSM 15641]
gi|256583098|gb|ACU94232.1| conserved hypothetical protein TIGR00250 [Cryptobacterium curtum
DSM 15641]
Length = 140
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ S+D+G R G+AISDP R A P L +V A + + GLPL
Sbjct: 3 VLSLDIGQVRCGIAISDPTGRVASPVCVLPSGEVIGCARSFKRLLDDWQPDLLLAGLPLT 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++GS G + RA + D +P F DERL++ A+++L + ++ + K+D
Sbjct: 63 LSGSSGGQAQRIRAQAQQIAD-TSGLPLEFVDERLSSQEAKRMLREEGLTERDMRGKIDM 121
Query: 139 IAAALILQEVLDR 151
IAA++ LQ LDR
Sbjct: 122 IAASIFLQAWLDR 134
>gi|161525692|ref|YP_001580704.1| Holliday junction resolvase-like protein [Burkholderia multivorans
ATCC 17616]
gi|189349586|ref|YP_001945214.1| Holliday junction resolvase-like protein [Burkholderia multivorans
ATCC 17616]
gi|226725496|sp|A9AFI6|RUVX_BURM1 RecName: Full=Putative Holliday junction resolvase
gi|160343121|gb|ABX16207.1| Holliday junction resolvase YqgF [Burkholderia multivorans ATCC
17616]
gi|189333608|dbj|BAG42678.1| putative holliday junction resolvase [Burkholderia multivorans ATCC
17616]
Length = 149
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G KRIG+AI + R A P L R+ + ELL+ + A ++GLP+
Sbjct: 13 AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPD---ALVVGLPM 69
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ + F N ++ + +P + DER ++V A+ + + NV + R +D
Sbjct: 70 HPDGTPHDMTQQAKRF-GNQLNGRFGLPVTWVDERYSSVEAEAGMRERNVRGRARTDMLD 128
Query: 138 SIAAALILQEVLDRISFLE 156
+ AA +ILQ+ LD++S E
Sbjct: 129 AEAARVILQQYLDQLSDHE 147
>gi|259501302|ref|ZP_05744204.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|302190974|ref|ZP_07267228.1| Holliday junction resolvase-like protein [Lactobacillus iners AB-1]
gi|309803606|ref|ZP_07697698.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
11V1-d]
gi|309805305|ref|ZP_07699356.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
09V1-c]
gi|309805981|ref|ZP_07700007.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
03V1-b]
gi|309807412|ref|ZP_07701375.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
01V1-a]
gi|309809657|ref|ZP_07703513.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
2503V10-D]
gi|312870703|ref|ZP_07730810.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
3008A-a]
gi|312872863|ref|ZP_07732925.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2062A-h1]
gi|312873741|ref|ZP_07733786.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2052A-d]
gi|312875199|ref|ZP_07735212.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2053A-b]
gi|315653053|ref|ZP_07905981.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC
55195]
gi|325911934|ref|ZP_08174337.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
143-D]
gi|325913722|ref|ZP_08176083.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B]
gi|329919583|ref|ZP_08276572.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
1401G]
gi|259167272|gb|EEW51767.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|308164354|gb|EFO66609.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
11V1-d]
gi|308165381|gb|EFO67613.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
09V1-c]
gi|308167584|gb|EFO69737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
03V1-b]
gi|308169334|gb|EFO71389.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
01V1-a]
gi|308170017|gb|EFO72054.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
2503V10-D]
gi|311089306|gb|EFQ47737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2053A-b]
gi|311090739|gb|EFQ49138.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2052A-d]
gi|311091597|gb|EFQ49979.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2062A-h1]
gi|311093715|gb|EFQ52052.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
3008A-a]
gi|315489588|gb|EFU79222.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC
55195]
gi|325476236|gb|EGC79399.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
143-D]
gi|325476922|gb|EGC80073.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B]
gi|328937388|gb|EGG33810.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
1401G]
Length = 143
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 21 SIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
+D+G+K +G+A+SD G + + + + + E ++ F++GLP N
Sbjct: 5 GLDVGSKTVGVAVSDALGITAQEVETIPIDESKYNFGMRRVKQLVREYEVSGFVVGLPKN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRKKRI 133
M+G+ G + + K +P + DERLTT+ A++IL++ V+RKK I
Sbjct: 65 MDGTCGESAQRCLDYGERL-KAKFKIPVYYSDERLTTIQAKRILVEEAGISDRVARKKII 123
Query: 134 QKVDSIAAALILQEVLD 150
D +AA LILQ L+
Sbjct: 124 ---DQMAAVLILQNFLE 137
>gi|305681376|ref|ZP_07404183.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii
ATCC 14266]
gi|305659581|gb|EFM49081.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii
ATCC 14266]
Length = 174
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 10/148 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALE-LLSFITTENIAAFIIGL 75
+D+GT RIG+A+S A P + R K ++ ++ L++ IT N+ I+GL
Sbjct: 21 GVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSDIDRLITLITDNNVVEVIVGL 80
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
P ++ G+ V + + R ++ +P DERL+TV A Q L VS K
Sbjct: 81 PRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADERLSTVVAHQALRASGVSEKS 140
Query: 132 RIQKVDSIAAALILQEVLD-RISFLESS 158
+ +D AA ILQ LD R ++L +
Sbjct: 141 GRKIIDQAAAVEILQSWLDGRTNYLHRT 168
>gi|332972979|gb|EGK10919.1| crossover junction endodeoxyribonuclease [Kingella kingae ATCC
23330]
Length = 151
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 15 PNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
P Q A + D G +RIG+A + AHP + + ++ I + ++
Sbjct: 5 PTQGSALAFDFGEQRIGVAQGEASIGIAHPLITITGQSNDDKFAQIAKQIQAWQPSCLVV 64
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKR 132
GLP +++G+E R F + R + V+W DERL++V A+++L V +K+
Sbjct: 65 GLPSHLDGTEHEITQLARKFGRRLHGR--FALPVYWVDERLSSVYAEELLRQAQVFGRKQ 122
Query: 133 IQKVDSIAAALILQEVLD 150
K+D +AA ILQ D
Sbjct: 123 KAKLDQVAAQAILQSFFD 140
>gi|256420947|ref|YP_003121600.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588]
gi|256035855|gb|ACU59399.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588]
Length = 136
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 70/141 (49%), Gaps = 21/141 (14%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFII 73
I +ID G KR GLA++DP + L+ +T A L ++ E + F+I
Sbjct: 4 ILAIDYGKKRTGLAVTDPLQ--------LIASGLTTVATHDLIPYLKKYLAQEAVELFLI 55
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNM-IDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRK 130
G P N++G H+T V + I K + VP DER T+ A Q +ID + +K
Sbjct: 56 GEPKNLDGGA---THATPLVVECIRILEKNFPQVPVKKVDERFTSKMAFQTMIDSGLKKK 112
Query: 131 KRIQK--VDSIAAALILQEVL 149
R K VD I+A +ILQE L
Sbjct: 113 DRQNKGLVDEISATIILQEYL 133
>gi|221201078|ref|ZP_03574118.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD2M]
gi|221206470|ref|ZP_03579483.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD2]
gi|221213802|ref|ZP_03586776.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD1]
gi|221166591|gb|EED99063.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD1]
gi|221173779|gb|EEE06213.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD2]
gi|221178928|gb|EEE11335.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD2M]
Length = 149
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G KRIG+AI + R A P L R+ + ELL+ + A ++GLP+
Sbjct: 13 AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPD---ALVVGLPM 69
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ + F N ++ + +P + DER ++V A+ + + NV + R +D
Sbjct: 70 HPDGTPHDMTQQAKRF-GNQLNGRFGLPVTWVDERYSSVEAEAGMRERNVRGRARADMLD 128
Query: 138 SIAAALILQEVLDRISFLE 156
+ AA +ILQ+ LD++S E
Sbjct: 129 AEAARVILQQYLDQLSDHE 147
>gi|283769385|ref|ZP_06342284.1| RNAse H-fold protein YqgF [Bulleidia extructa W1219]
gi|283104042|gb|EFC05426.1| RNAse H-fold protein YqgF [Bulleidia extructa W1219]
Length = 140
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLN 78
+DLG+ G++ S+ G AH + K + ++L+ I E ++G PL
Sbjct: 6 GLDLGSVTCGVSASETGL-IAHTVETIRFKNEDYNEAMDKVLAIIEREKPDEIVLGYPLL 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+NG GPR + F + + +P DER TTV A++IL+ ++SRKKR +K+D
Sbjct: 65 LNGDVGPRAQLSEEFKEVLE-EECGLPVHLMDERFTTVEAEEILLQADISRKKRKKKIDQ 123
Query: 139 IAAALILQEVLDRIS 153
+AA ILQ LDRI
Sbjct: 124 LAAVQILQYYLDRIG 138
>gi|262377004|ref|ZP_06070230.1| endonuclease [Acinetobacter lwoffii SH145]
gi|262308042|gb|EEY89179.1| endonuclease [Acinetobacter lwoffii SH145]
Length = 147
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q I + D GT+++G+++ A+P P K ELL + + F++GLP
Sbjct: 8 QTIMAFDFGTQKMGMSVGQSLIASANPLPLFPMKDGIPNWDELLKIVKSHQPNLFLVGLP 67
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+ SE R F + + ++ DERLTT A+ L + +
Sbjct: 68 LNMDDSESELSTRARKFARRLRHQTNIETWMV-DERLTTREARDELDHYQAQGRGKKLSA 126
Query: 137 DSIAAALILQ 146
DSIAAAL+++
Sbjct: 127 DSIAAALLIE 136
>gi|167752474|ref|ZP_02424601.1| hypothetical protein ALIPUT_00725 [Alistipes putredinis DSM 17216]
gi|167659543|gb|EDS03673.1| hypothetical protein ALIPUT_00725 [Alistipes putredinis DSM 17216]
Length = 137
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID GTKR G+A+SDP R A + K + + L + +++ +IG P+
Sbjct: 4 ILAIDYGTKRTGIAVSDPLRIIAGGLETVETKGLERW---LAQYFAANDVSTIVIGKPMQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135
M+G+ + R+ Y VF+DER T+V A + +++ + + R K
Sbjct: 61 MSGAPSETWRYVEPLAARL--RRAYPDKEVVFYDERFTSVIAHRTMLESGMGKMARRDKA 118
Query: 136 -VDSIAAALILQEVLD 150
VD I+A +ILQ ++
Sbjct: 119 LVDKISATIILQGYME 134
>gi|307256259|ref|ZP_07538043.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306865223|gb|EFM97122.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 137
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GT IG A+ A P + ++ I ++GLPLN
Sbjct: 5 ILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPLN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSE P + F N ++ + + DERLTTVSA+ + + + + KVDS
Sbjct: 65 MDGSEQPLTQRAKKFA-NRLNGRFNLLVELQDERLTTVSAKAEIFERGGYKALKKDKVDS 123
Query: 139 IAAALILQEVLD 150
I+A LIL+ +
Sbjct: 124 ISACLILESWFE 135
>gi|225012716|ref|ZP_03703151.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A]
gi|225003249|gb|EEG41224.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A]
Length = 140
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GTKR GLA +DP + A L +V L + E + F++G PL +
Sbjct: 6 GIDFGTKRTGLACTDPLKIIASGLKNLSTPEVIPF---LKKYCEMEEVDTFVVGKPLQKD 62
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138
G+ + F+ + ++ +DER T+ A Q +I+ + +K+R K +D
Sbjct: 63 GTPAEVEVDIKNFIKKLQNQFPSQSIERYDERYTSKLAFQSMINGGLKKKQRADKGMIDQ 122
Query: 139 IAAALILQEVLD 150
++A LILQ LD
Sbjct: 123 VSATLILQSYLD 134
>gi|284931131|gb|ADC31069.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
F]
Length = 142
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 10/136 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP------RPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G+K +G+A D + A P + ++ + + + SF F+IG
Sbjct: 5 ALDVGSKTLGIATGDGEFKIASPYCVISFNQYDFKQCLAELKEKTASFFYD---FKFVIG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+P N++ ++ F+ ++ + +DE T++ A Q+LID + KKR +
Sbjct: 62 MPKNIDQTKSSTTEMVENFIE-LLKANYKNEVIIYDESYTSIIADQLLIDNQIKAKKRKE 120
Query: 135 KVDSIAAALILQEVLD 150
K+D +AA +ILQ D
Sbjct: 121 KIDKLAAFVILQSFFD 136
>gi|305664804|ref|YP_003861091.1| Holliday junction resolvase-like protein [Maribacter sp. HTCC2170]
gi|88707926|gb|EAR00165.1| Holliday junction resolvase-like protein [Maribacter sp. HTCC2170]
Length = 154
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 13/139 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF----ITTENIAAFIIG 74
I ++D G R G+A++D + A T +EL+SF ++ EN+ F++G
Sbjct: 22 IVALDYGKVRTGIAVTDELQLIASGL-------TTVKTVELISFLKKYVSEENVEKFVVG 74
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P M+ + + F+ ++ + +P DER T+ A Q +ID + +K+R
Sbjct: 75 EPRQMDYTPSQAEELIKPFLKHLGRTFIEIPIERQDERFTSKMAFQSMIDGGIKKKQRKN 134
Query: 135 K--VDSIAAALILQEVLDR 151
K VD I+A LILQ L++
Sbjct: 135 KALVDEISATLILQAYLNK 153
>gi|308050639|ref|YP_003914205.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799]
gi|307632829|gb|ADN77131.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799]
Length = 138
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GTK IG+A+ A P + + E+ + + ++GLPLN
Sbjct: 4 IMAFDFGTKSIGVAVGQTVTGTASPLLGIKARDGIPNWDEIAALLKEWQPDKLVVGLPLN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G++ + R F + + R + + DERLTTV A+ L + R + +VD+
Sbjct: 64 MDGTDQHVTRAARKFANRLFGR-FGIETLTQDERLTTVDARARLFEDGGYRALKKDQVDA 122
Query: 139 IAAALILQEVLDRI 152
+AAALIL+ + +
Sbjct: 123 LAAALILESYFETL 136
>gi|257465328|ref|ZP_05629699.1| Holliday junction resolvase-like protein [Actinobacillus minor 202]
gi|257450988|gb|EEV25031.1| Holliday junction resolvase-like protein [Actinobacillus minor 202]
Length = 140
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GT IG A+ A P + ++ I ++GLPLN
Sbjct: 5 VLAFDFGTYSIGCAVGQSITGTAQGLPAFKAQDGIPDWAQIEKVIQEWQPDVLVVGLPLN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E P + F N ++ + +P DERLTTV A+ + + + KVD+
Sbjct: 65 MDGTEQPLTQRAKKFA-NRLNGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKGKVDA 123
Query: 139 IAAALILQEVLDRISFLESSKG 160
I+A LIL+ S+ E+ G
Sbjct: 124 ISACLILE------SWFENQTG 139
>gi|170077568|ref|YP_001734206.1| Holliday junction resolvase-like protein [Synechococcus sp. PCC
7002]
gi|226695310|sp|B1XJ08|RUVX_SYNP2 RecName: Full=Putative Holliday junction resolvase
gi|169885237|gb|ACA98950.1| YqgFc, likely ribonuclease with RNase H fold; putative Holliday
junction resolvase [Synechococcus sp. PCC 7002]
Length = 144
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 3/136 (2%)
Query: 17 QPIASI--DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+P+A++ D+G KRIG+A D A + R + + +I +I ++G
Sbjct: 2 KPVAALGLDIGRKRIGVAGCDGLGLLATALTTIQRTTLEADLAAIAHWIEQRHIQVLVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP M+GS G + T+ F + + +P + DERLT+V A+ L +++
Sbjct: 62 LPYAMDGSLGKQAKQTQKFARKLAE-AFGLPIEYVDERLTSVEAENQLKAEKQYDRQQKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD AA +ILQ+ L+
Sbjct: 121 LVDQRAAQIILQQWLE 136
>gi|113969542|ref|YP_733335.1| Holliday junction resolvase-like protein [Shewanella sp. MR-4]
gi|114046775|ref|YP_737325.1| Holliday junction resolvase-like protein [Shewanella sp. MR-7]
gi|117919648|ref|YP_868840.1| Holliday junction resolvase-like protein [Shewanella sp. ANA-3]
gi|113884226|gb|ABI38278.1| Holliday junction resolvase YqgF [Shewanella sp. MR-4]
gi|113888217|gb|ABI42268.1| Holliday junction resolvase YqgF [Shewanella sp. MR-7]
gi|117611980|gb|ABK47434.1| Holliday junction resolvase YqgF [Shewanella sp. ANA-3]
Length = 141
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIG 74
+ + D GTK IG+AI + A P L K V E+ I ++G
Sbjct: 4 KTVLGFDFGTKSIGVAIGQ--QITASATPLLSLKAVDGIPNWDEIGKLIKEWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E H R F N ++ K V V DERLTT A+ L ++ +
Sbjct: 62 LPLNMDGTEQEMTHRARKFA-NRLNAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKG 120
Query: 135 KVDSIAAALILQEVLD 150
+VD+++A LI++ +
Sbjct: 121 QVDAVSAVLIVESYFE 136
>gi|119962349|ref|YP_948020.1| hypothetical protein AAur_2280 [Arthrobacter aurescens TC1]
gi|119949208|gb|ABM08119.1| putative Uncharacterised protein family (UPF0081) [Arthrobacter
aurescens TC1]
Length = 196
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 9/137 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI-IGLPLNM 79
+D+GT R+GLA+ DP A P + R + + +L + A I +GLP M
Sbjct: 17 GVDVGTVRVGLAVCDPDGILATPLKTIGRDSKKNSDVRVLVKHAADLPAVQIFVGLPRTM 76
Query: 80 NGSEGPRVHSTRA------FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G E R + A V ++ + VP DERL+TV+A + L +S K
Sbjct: 77 KGEE--RASAQMAMDYADLLVSELLRVGLDVPVNLVDERLSTVTAHRNLHQAGMSSKNHR 134
Query: 134 QKVDSIAAALILQEVLD 150
+ VD +AAA ILQ +D
Sbjct: 135 KVVDQVAAAGILQHAID 151
>gi|218768356|ref|YP_002342868.1| Holliday junction resolvase-like protein [Neisseria meningitidis
Z2491]
gi|32130067|sp|Q9JU11|RUVX_NEIMA RecName: Full=Putative Holliday junction resolvase
gi|121052364|emb|CAM08696.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
gi|319410602|emb|CBY90971.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
Length = 151
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
LP++ +G++ H +R F + R +P V+W DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTKHEMTHLSRKFGRRLNGR-FNLP-VYWVDERLSSVYAESLLSEAQVFGKKRK 122
Query: 134 QKVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 123 SVLDQVAAQAILHGFFE 139
>gi|300726437|ref|ZP_07059885.1| conserved hypothetical protein [Prevotella bryantii B14]
gi|299776285|gb|EFI72847.1| conserved hypothetical protein [Prevotella bryantii B14]
Length = 139
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74
I SID G KR GLA++DP + + T + ++L F+ E + I+G
Sbjct: 4 ILSIDYGKKRTGLAVTDPMQ-------IIANGLTTVSTVDLWDFLQNYCKKEGVERIIMG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NG + F + +P ++DER T+V A + +ID V +K R +
Sbjct: 57 KPTQPNGLPSENMGRVENFYNRWHKAHPEIPIEYYDERFTSVIAHRAMIDGGVKKKVRRE 116
Query: 135 K---VDSIAAALILQEVL 149
VD ++A +IL++ +
Sbjct: 117 NKGLVDEVSATIILEDWM 134
>gi|31544327|ref|NP_852905.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
R(low)]
gi|62901003|sp|Q7NBY7|RUVX_MYCGA RecName: Full=Putative Holliday junction resolvase
gi|31541171|gb|AAP56473.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
R(low)]
gi|284930366|gb|ADC30305.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
R(high)]
Length = 142
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 10/136 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP------RPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G++ +G+A D + A P + R+ + + + SF F+IG
Sbjct: 5 ALDVGSRTLGIATGDGEFKIASPYCVISFNQYDFRQCLAELKEKTASFFYD---FKFVIG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+P N++ ++ F+ ++ + +DE T++ A Q+LID + KKR +
Sbjct: 62 MPKNIDQTKSSTTEMVENFIE-LLKANYKNEVIIYDESYTSIIADQLLIDNQIKAKKRKE 120
Query: 135 KVDSIAAALILQEVLD 150
K+D +AA +ILQ D
Sbjct: 121 KIDKLAAFVILQSFFD 136
>gi|161870210|ref|YP_001599380.1| Holliday junction resolvase-like protein [Neisseria meningitidis
053442]
gi|189046101|sp|A9LZR5|RUVX_NEIM0 RecName: Full=Putative Holliday junction resolvase
gi|161595763|gb|ABX73423.1| Putative Holliday junction resolvase [Neisseria meningitidis
053442]
Length = 151
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGETRIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
LP++ +G++ H +R F + R +P V+W DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTKHEMTHLSRKFGRRLNGR-FNLP-VYWVDERLSSVYAESLLSEAQVFGKKRK 122
Query: 134 QKVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 123 SVLDQVAAQAILHGFFE 139
>gi|269795076|ref|YP_003314531.1| hypothetical protein Sked_17700 [Sanguibacter keddieii DSM 10542]
gi|269097261|gb|ACZ21697.1| conserved hypothetical protein TIGR00250 [Sanguibacter keddieii DSM
10542]
Length = 167
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--------TALELLSFITTE-NIAAF 71
+D+G+ R+G+A+SDP A P L R VT T L L+ E +
Sbjct: 14 CVDVGSVRVGVAVSDPDGLIATPVETLPRDVVTAAKNPAAVPTDLAALAEQVVERGVKVV 73
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+GLP +++G+EG S RA+ + VP DER++TV+A Q L + +K
Sbjct: 74 YVGLPRHLSGAEGTASASARAYAVQVARLVAPVPVRLVDERMSTVTAHQALHASGRAGRK 133
Query: 132 RIQKVDSIAAALILQEVLD 150
VD +AA +ILQ LD
Sbjct: 134 HRAVVDQVAAVVILQSALD 152
>gi|15677203|ref|NP_274356.1| Holliday junction resolvase-like protein [Neisseria meningitidis
MC58]
gi|121635046|ref|YP_975291.1| Holliday junction resolvase-like protein [Neisseria meningitidis
FAM18]
gi|254805133|ref|YP_003083354.1| putative Hollyday junction resolvase [Neisseria meningitidis
alpha14]
gi|304387351|ref|ZP_07369543.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
ATCC 13091]
gi|32130068|sp|Q9JZ16|RUVX_NEIMB RecName: Full=Putative Holliday junction resolvase
gi|167012740|sp|A1KUG2|RUVX_NEIMF RecName: Full=Putative Holliday junction resolvase
gi|7226581|gb|AAF41712.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|120866752|emb|CAM10505.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
gi|254668675|emb|CBA06382.1| putative Hollyday junction resolvase [Neisseria meningitidis
alpha14]
gi|254669936|emb|CBA04529.1| putative Hollyday junction resolvase [Neisseria meningitidis
alpha153]
gi|254673037|emb|CBA07628.1| putative Hollyday junction resolvase [Neisseria meningitidis
alpha275]
gi|304338602|gb|EFM04720.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
ATCC 13091]
gi|308389455|gb|ADO31775.1| Holliday junction resolvase-like protein [Neisseria meningitidis
alpha710]
gi|316984140|gb|EFV63118.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325128470|gb|EGC51351.1| hypothetical protein NMXN1568_0820 [Neisseria meningitidis N1568]
gi|325130425|gb|EGC53189.1| hypothetical protein NMBOX9930304_0816 [Neisseria meningitidis
OX99.30304]
gi|325132467|gb|EGC55160.1| hypothetical protein NMBM6190_0869 [Neisseria meningitidis M6190]
gi|325134425|gb|EGC57070.1| hypothetical protein NMBM13399_0866 [Neisseria meningitidis M13399]
gi|325136160|gb|EGC58768.1| hypothetical protein NMBM0579_0893 [Neisseria meningitidis M0579]
gi|325138241|gb|EGC60810.1| hypothetical protein NMBES14902_0966 [Neisseria meningitidis
ES14902]
gi|325140441|gb|EGC62962.1| hypothetical protein NMBCU385_0832 [Neisseria meningitidis CU385]
gi|325198484|gb|ADY93940.1| conserved hypothetical protein [Neisseria meningitidis G2136]
gi|325200040|gb|ADY95495.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325201953|gb|ADY97407.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
gi|325204333|gb|ADY99786.1| conserved hypothetical protein [Neisseria meningitidis M01-240355]
Length = 151
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
LP++ +G++ H +R F + R +P V+W DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTKHEMTHLSRKFGRRLNGR-FNLP-VYWVDERLSSVYAESLLSEAQVFGKKRK 122
Query: 134 QKVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 123 SVLDQVAAQAILHGFFE 139
>gi|167957612|ref|ZP_02544686.1| Holliday junction resolvase YqgF [candidate division TM7
single-cell isolate TM7c]
Length = 134
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 13/133 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
+D+G KRIG+A++D G + A P L +V T +E +L EN ++G P N
Sbjct: 7 CLDVGEKRIGVAVADLGVKIAIP---LTTIEVDGTEIEQILRLYGRENARTLVVGYPRNQ 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137
G + FV + + Y+ F DE LT+V A+Q L SR + K +D
Sbjct: 64 QGETTAQTVFVEEFVKPL---EEYINIEFQDESLTSVQAEQRL----KSRGQNYTKGDID 116
Query: 138 SIAAALILQEVLD 150
S AA +ILQ+ ++
Sbjct: 117 SEAATIILQDYME 129
>gi|256821447|ref|YP_003145410.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069]
gi|256794986|gb|ACV25642.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069]
Length = 145
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 27/153 (17%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS---------- 61
+L Q D G KR+G+A VR +++ AL +L+
Sbjct: 3 TLTTAQRYLCFDFGEKRLGVATG-------------VRTQMSSQALTVLAVTNDQPDWKL 49
Query: 62 ---FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
I N+ AF++GLPLNM+ SE R F N + + +P DERL++
Sbjct: 50 IENLIREWNVEAFVVGLPLNMDDSEQELTQKARKFA-NRLHGRFGLPTHLHDERLSSAEV 108
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
+ L ++ +K + +D+ AA LIL+ ++
Sbjct: 109 KDYLYEIGGYKKLKQNPIDAYAAELILKSFFEQ 141
>gi|198284748|ref|YP_002221069.1| Holliday junction resolvase YqgF [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218665123|ref|YP_002427428.1| hypothetical protein AFE_3061 [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198249269|gb|ACH84862.1| Holliday junction resolvase YqgF [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218517336|gb|ACK77922.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 143
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 5/130 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGL 75
P+ ID G +RIG+A+ G P+ +R + + I E A ++GL
Sbjct: 7 PLLGIDFGERRIGIAVL--GESGLAPQGVATLRNGECGPDWDGFARILKEWQPRALVLGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL+M+GSEG V R F ++ R+ +P + DERL++ +A +L + +S KKR +
Sbjct: 65 PLHMDGSEGFMVGRVRKFAESL-QRRFPLPIHWVDERLSSHAADLVLKERELSHKKRGRL 123
Query: 136 VDSIAAALIL 145
+D AA IL
Sbjct: 124 LDQAAACEIL 133
>gi|170781161|ref|YP_001709493.1| Holliday junction resolvase-like protein [Clavibacter michiganensis
subsp. sepedonicus]
gi|189046091|sp|B0REK3|RUVX_CLAMS RecName: Full=Putative Holliday junction resolvase
gi|169155729|emb|CAQ00850.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 161
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
++D+G RIGLA SDP A P + R + + + E + ++GLPL +
Sbjct: 8 AVDVGKARIGLARSDPHGLIATPVETVPRDAAGSADVRRILEVAAEIDCTELVVGLPLAL 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G F + D + DERL+TVSAQ L +K+ +D +
Sbjct: 68 SGRATASTDDAEGFARRLAD-ATEIRVRLVDERLSTVSAQGALRASGRGSRKQKPVIDQV 126
Query: 140 AAALILQEVLD 150
AA +ILQ L+
Sbjct: 127 AAVIILQHALE 137
>gi|111073618|emb|CAL29481.1| hypothetical protein OW3-C [Wolbachia endosymbiont of Onchocerca
volvulus]
Length = 136
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
+D+G K+IG+A SD + A RK +++ L L+ + EN A + +IGLPL
Sbjct: 2 CLDMGKKQIGIAFSDKTQLIATAHSIYNRKNISKD-LGYLNRVFKENEAGSVVIGLPLET 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
N + F M+ +K V DE L+T A L VS K + D I
Sbjct: 61 NRKSSEWYETIIQFATKMV-KKYKVNIYLQDESLSTFIAIHTLKTAGVSITKSKKIDDKI 119
Query: 140 AAALILQEVLDRISFLE 156
+A +ILQ LD+I+ ++
Sbjct: 120 SACIILQRTLDKINAIK 136
>gi|51597519|ref|YP_071710.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis IP 32953]
gi|186896642|ref|YP_001873754.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis PB1/+]
gi|62900961|sp|Q666N9|RUVX_YERPS RecName: Full=Putative Holliday junction resolvase
gi|226695320|sp|B2K0T4|RUVX_YERPB RecName: Full=Putative Holliday junction resolvase
gi|51590801|emb|CAH22447.1| Putative endonuclease involved in recombination [Yersinia
pseudotuberculosis IP 32953]
gi|186699668|gb|ACC90297.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis
PB1/+]
Length = 140
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 31/150 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ I + D GTK IG+AI ++VT TA L +F + +
Sbjct: 3 NRTIIAFDFGTKSIGVAIG---------------QEVTGTARALTAFKAQDGTPDWQQVE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E P R F N + + V DERL+TV A+
Sbjct: 48 KLLKEWQPNLVVVGLPLNMDGTEQPLTARARRFA-NRLHGRFGVQIALQDERLSTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L D R VD+ +A +IL+ D
Sbjct: 107 NLFDRGGYRALDKGSVDAASAVIILESWFD 136
>gi|119945031|ref|YP_942711.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37]
gi|119863635|gb|ABM03112.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37]
Length = 145
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 31/159 (19%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + LK + D GTK IG+A + +T TA L + + I
Sbjct: 1 MTEPLKSPSNLLGFDFGTKSIGVATG---------------QMITATAQPLSAIKANDGI 45
Query: 69 AAF---------------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERL 113
+ ++GLPLNM+GSE P + F N ++ + V DERL
Sbjct: 46 PNWDIVEKVIRDWMPDLIVVGLPLNMDGSEQPITQRAKKFA-NRLNGRFGVKVALQDERL 104
Query: 114 TTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
TT SA++ + + K+DS++AALIL+ ++
Sbjct: 105 TTASAKEFIFTHGGYKALEKGKIDSVSAALILESWMENF 143
>gi|303232788|ref|ZP_07319473.1| RNAse H domain protein, YqgF family [Atopobium vaginae PB189-T1-4]
gi|302481274|gb|EFL44349.1| RNAse H domain protein, YqgF family [Atopobium vaginae PB189-T1-4]
Length = 137
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G R+G+A+SD A P L ++V A + + GLP +
Sbjct: 3 VVALDIGDVRVGIAVSDATGSVASPVKVLPFQEVYACAKTFRRILEDYEPELLVCGLPKS 62
Query: 79 MNGSEGPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
++G+ G + T+ H I +P F DERL++ A++IL K+ +D
Sbjct: 63 LDGACGAQAEKITQQAQH--IAACCNLPLAFVDERLSSSEAKRILRAQGYKEKQMRGHID 120
Query: 138 SIAAALILQEVLD 150
IAA+L LQ LD
Sbjct: 121 MIAASLFLQAYLD 133
>gi|300934542|ref|ZP_07149798.1| Holliday junction resolvase-like protein [Corynebacterium resistens
DSM 45100]
Length = 192
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID+GT RIGLA+SDP A P + + ++ + + IIGLP+ +
Sbjct: 45 GIDVGTVRIGLALSDPDGILASPLRTVHARDDGGDVRQVACEVEENFVVEVIIGLPVALR 104
Query: 81 GSEGPRVHSTRAFV---HNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
G+ +AF H+ + ++ + +P DER++TV+A + V+ KK ++
Sbjct: 105 GNSTASTEKAKAFASELHDELAQRGHQSIPIRMVDERMSTVAATAAMHASGVNVKKGRKR 164
Query: 136 VDSIAAALILQEVLD 150
+D AA ILQ LD
Sbjct: 165 IDQAAAVHILQGWLD 179
>gi|22127199|ref|NP_670622.1| Holliday junction resolvase-like protein [Yersinia pestis KIM 10]
gi|45443243|ref|NP_994782.1| Holliday junction resolvase-like protein [Yersinia pestis biovar
Microtus str. 91001]
gi|108806325|ref|YP_650241.1| Holliday junction resolvase-like protein [Yersinia pestis Antiqua]
gi|108813294|ref|YP_649061.1| Holliday junction resolvase-like protein [Yersinia pestis Nepal516]
gi|145597885|ref|YP_001161961.1| Holliday junction resolvase-like protein [Yersinia pestis Pestoides
F]
gi|149367054|ref|ZP_01889087.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125]
gi|153949472|ref|YP_001399818.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis IP 31758]
gi|162421693|ref|YP_001607683.1| Holliday junction resolvase-like protein [Yersinia pestis Angola]
gi|165924969|ref|ZP_02220801.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937369|ref|ZP_02225933.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010339|ref|ZP_02231237.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212701|ref|ZP_02238736.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167400030|ref|ZP_02305548.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422013|ref|ZP_02313766.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426704|ref|ZP_02318457.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468156|ref|ZP_02332860.1| hypothetical protein YpesF_09714 [Yersinia pestis FV-1]
gi|170023085|ref|YP_001719590.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis YPIII]
gi|218928109|ref|YP_002345984.1| Holliday junction resolvase-like protein [Yersinia pestis CO92]
gi|229837629|ref|ZP_04457791.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A]
gi|229840856|ref|ZP_04461015.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842584|ref|ZP_04462739.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229903757|ref|ZP_04518870.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516]
gi|270487535|ref|ZP_06204609.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27]
gi|294502900|ref|YP_003566962.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003]
gi|32130051|sp|Q8ZHG2|RUVX_YERPE RecName: Full=Putative Holliday junction resolvase
gi|124107446|sp|Q1CB76|RUVX_YERPA RecName: Full=Putative Holliday junction resolvase
gi|124107447|sp|Q1CEW9|RUVX_YERPN RecName: Full=Putative Holliday junction resolvase
gi|167016518|sp|A7FEZ0|RUVX_YERP3 RecName: Full=Putative Holliday junction resolvase
gi|167016519|sp|A4TI76|RUVX_YERPP RecName: Full=Putative Holliday junction resolvase
gi|226695321|sp|A9R307|RUVX_YERPG RecName: Full=Putative Holliday junction resolvase
gi|226695322|sp|B1JNP5|RUVX_YERPY RecName: Full=Putative Holliday junction resolvase
gi|21960265|gb|AAM86873.1|AE013933_10 hypothetical protein y3323 [Yersinia pestis KIM 10]
gi|45438111|gb|AAS63659.1| Predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Yersinia pestis biovar Microtus str. 91001]
gi|108776942|gb|ABG19461.1| hypothetical protein YPN_3134 [Yersinia pestis Nepal516]
gi|108778238|gb|ABG12296.1| hypothetical protein YPA_0328 [Yersinia pestis Antiqua]
gi|115346720|emb|CAL19603.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145209581|gb|ABP38988.1| hypothetical protein YPDSF_0578 [Yersinia pestis Pestoides F]
gi|149290668|gb|EDM40744.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125]
gi|152960967|gb|ABS48428.1| conserved hypothetical protein TIGR00250 [Yersinia
pseudotuberculosis IP 31758]
gi|162354508|gb|ABX88456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis Angola]
gi|165914843|gb|EDR33456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923169|gb|EDR40320.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990825|gb|EDR43126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205993|gb|EDR50473.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960150|gb|EDR56171.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050738|gb|EDR62146.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054307|gb|EDR64126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749619|gb|ACA67137.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis
YPIII]
gi|229679527|gb|EEO75630.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516]
gi|229690894|gb|EEO82948.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229697222|gb|EEO87269.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229704317|gb|EEO91328.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A]
gi|262360935|gb|ACY57656.1| Holliday junction resolvase-like protein [Yersinia pestis D106004]
gi|262364875|gb|ACY61432.1| Holliday junction resolvase-like protein [Yersinia pestis D182038]
gi|270336039|gb|EFA46816.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27]
gi|294353359|gb|ADE63700.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003]
gi|320013981|gb|ADV97552.1| putative Holliday junction resolvase [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 140
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 31/150 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ I + D GTK IG+AI ++VT TA L +F + +
Sbjct: 3 NRTIIAFDFGTKSIGVAIG---------------QEVTGTARALTAFKAQDGTPDWQQVE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E P R F N + + V DERL+TV A+
Sbjct: 48 KLLKEWQPNLVVVGLPLNMDGTEQPLTARARRFA-NRLHGRFGVQVALQDERLSTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L D R VD+ +A +IL+ D
Sbjct: 107 NLFDRGGYRALDKGSVDAASAVIILESWFD 136
>gi|170765861|ref|ZP_02900672.1| putative Holliday junction resolvase [Escherichia albertii TW07627]
gi|170125007|gb|EDS93938.1| putative Holliday junction resolvase [Escherichia albertii TW07627]
Length = 138
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWLPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVDVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|94986946|ref|YP_594879.1| endonuclease [Lawsonia intracellularis PHE/MN1-00]
gi|146325577|sp|Q1MR19|RUVX_LAWIP RecName: Full=Putative Holliday junction resolvase
gi|94731195|emb|CAJ54557.1| predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Lawsonia intracellularis PHE/MN1-00]
Length = 142
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID GTK G+A+SD FA P+ ++ + ++L+ I E+ A ++GLP+ +
Sbjct: 5 AIDYGTKYTGIAVSDSMGVFAFPKQSIIMTTQKEFFIKLVELIYVESPDALVVGLPVLFD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV-DSI 139
SE R F+ + K+ +P E L++ A+ L + RK +I+ V D
Sbjct: 65 NSETLITRQVRNFIKRL-KHKIMLPVFLMKEILSSYEAKLDLQSVGY-RKNKIKSVLDQQ 122
Query: 140 AAALILQEVLDR 151
AA ILQ LD+
Sbjct: 123 AAVRILQSFLDQ 134
>gi|86605420|ref|YP_474183.1| Holliday junction resolvase-like protein [Synechococcus sp.
JA-3-3Ab]
gi|146325616|sp|Q2JWE3|RUVX_SYNJA RecName: Full=Putative Holliday junction resolvase
gi|86553962|gb|ABC98920.1| conserved hypothetical protein TIGR00250 [Synechococcus sp.
JA-3-3Ab]
Length = 159
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
+D+G +RIG+A SD A + R+ + + ++ ++I ++G+PL +G
Sbjct: 19 LDVGNRRIGVAGSDGLGLLATGLGVIRRRSLPEDIAQVQAWIRRRQATVVVVGIPLLADG 78
Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
S G + + FV + V +P V +E L+TV A+ L + K + +D +A
Sbjct: 79 SVGSQARKVQRFVR-ALQAAVDLPVVTVNEYLSTVQAEWDLRQAGIPAKAQKALIDQQSA 137
Query: 142 ALILQEVLDRISFLESSKG 160
A+ILQ LD + +SSK
Sbjct: 138 AVILQTWLDERRYSQSSKA 156
>gi|119475413|ref|ZP_01615766.1| Holliday junction resolvase-like protein [marine gamma
proteobacterium HTCC2143]
gi|119451616|gb|EAW32849.1| Holliday junction resolvase-like protein [marine gamma
proteobacterium HTCC2143]
Length = 153
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK IGLAI A+P L K ++ I +IGLPLN
Sbjct: 14 VLCFDFGTKSIGLAIGQSITNTANPLTELKAKDGVPNWEQIKKIIDEWQPDLLLIGLPLN 73
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS + F N + + +P DERL++ A+ +I SR + VDS
Sbjct: 74 MDGSFSELSRRAKKFA-NRLHGRFGLPVSMADERLSSYEAKGEIIQQTGSRDFKRNNVDS 132
Query: 139 IAAALILQEVL 149
+AA +IL+ L
Sbjct: 133 LAAKIILESWL 143
>gi|77163898|ref|YP_342423.1| Holliday junction resolvase YqgF [Nitrosococcus oceani ATCC 19707]
gi|254435808|ref|ZP_05049315.1| conserved hypothetical protein TIGR00250 [Nitrosococcus oceani
AFC27]
gi|146325583|sp|Q3JE53|RUVX_NITOC RecName: Full=Putative Holliday junction resolvase
gi|76882212|gb|ABA56893.1| Holliday junction resolvase YqgF [Nitrosococcus oceani ATCC 19707]
gi|207088919|gb|EDZ66191.1| conserved hypothetical protein TIGR00250 [Nitrosococcus oceani
AFC27]
Length = 152
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 15 PNQP--IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
P++P + D G + IG+A+ A+P L + ++ I N I
Sbjct: 10 PSKPRIVLGFDFGLRYIGVAVGQEVTHSANPLTTLKAHEGNPDWNQITQLIRQWNPDLLI 69
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKK 131
+GLPLNM+ SE + R F H + R Y V W DERL+TV A++ L ++ S
Sbjct: 70 VGLPLNMDQSEQFLTKAARRFGHRLHGR--YGLAVEWVDERLSTVEARERL-NIKSSASG 126
Query: 132 RIQKVDSIAAALILQEVL 149
R Q +D +AA ILQ L
Sbjct: 127 RRQGIDQMAAQCILQTWL 144
>gi|329998587|ref|ZP_08303171.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3]
gi|328538606|gb|EGF64706.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3]
Length = 138
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D GTK IG+A A P P L + + + A I+GLPLNM+
Sbjct: 7 GFDFGTKSIGVAGGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V + DERL+TV A+ L + R VDS +
Sbjct: 67 GTEQPLTARARNFA-NKIHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGSVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVVILESYFEQ 136
>gi|239996734|ref|ZP_04717258.1| Holliday junction resolvase-like protein [Alteromonas macleodii
ATCC 27126]
Length = 143
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKV-TQTALELLSFITTENIAAFII 73
N+ + + D GTK IG+A+ A P L R + T +E L I ++
Sbjct: 6 NRTVLAFDFGTKSIGVAVGQEITGTASPLAALKARDGIPDWTLIEKLYEEWQPQIV--VV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
GLPLNM+G+E R F + + R KV V DERLTT A+ +L ++ +K
Sbjct: 64 GLPLNMDGTEQEMTQRARKFANRLHGRFKVAVDTC--DERLTTTDAKAMLFELGGYKKLT 121
Query: 133 IQKVDSIAAALIL 145
KVDS++A +I
Sbjct: 122 KDKVDSVSACVIF 134
>gi|326796931|ref|YP_004314751.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1]
gi|326547695|gb|ADZ92915.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1]
Length = 159
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 15 PN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
PN + + D GT RIG+AI A P L + + + F+
Sbjct: 18 PNIAKTVLGFDFGTTRIGVAIGQNVTMSARPLSPLKANEGIPNWDTIAKLVAEWEPDCFV 77
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+GSE R F + R P+ DERL++ A+ +I R +
Sbjct: 78 VGLPLNMDGSENEMCQRARKFAKRLHGR-YNRPYHMMDERLSSYDAKGQVIAQGGHRNFK 136
Query: 133 IQKVDSIAAALILQ 146
VD +AA LI++
Sbjct: 137 ENSVDGLAAQLIIE 150
>gi|293394486|ref|ZP_06638782.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
gi|291422951|gb|EFE96184.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
Length = 140
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 65/151 (43%), Gaps = 31/151 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ I + D GTK IG AI +++T TA L +F + +
Sbjct: 3 NRTIIAFDFGTKSIGAAIG---------------QEITGTARALAAFKAQDGTPDWQKIE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+GSE P R F N + + V DERL+TV A+
Sbjct: 48 KLLKEWQPDLVVVGLPLNMDGSEQPLTERARKFA-NRLHGRFGVKIDLHDERLSTVEARS 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
L D R VDS +A +IL+ ++
Sbjct: 107 HLFDRGGFRALDKGSVDSASAVVILESWFEQ 137
>gi|145220493|ref|YP_001131202.1| Holliday junction resolvase YqgF [Prosthecochloris vibrioformis DSM
265]
gi|145206657|gb|ABP37700.1| Holliday junction resolvase YqgF [Chlorobium phaeovibrioides DSM
265]
Length = 142
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTKRIGLA++DP R FA P R+ + Q ALE + + IA ++G PL+
Sbjct: 6 LVGIDYGTKRIGLAVADPLRIFARPVGTFSREGL-QGALEEIE--RQDGIATLVVGYPLS 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
G F+ + + V DE ++ A IL SRK R +K +
Sbjct: 63 SGGETNAMTGVIDRFITELGEAFPDVAIERVDEYHSSREAVHILAAAGGSRKDRQKKGRL 122
Query: 137 DSIAAALILQEVLDRIS 153
D+ AA ++L L+ S
Sbjct: 123 DTAAACVLLTRYLEESS 139
>gi|302541104|ref|ZP_07293446.1| putative Holliday junction resolvase [Streptomyces hygroscopicus
ATCC 53653]
gi|302458722|gb|EFL21815.1| putative Holliday junction resolvase [Streptomyces himastatinicus
ATCC 53653]
Length = 124
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 41/80 (51%)
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
+IGLP ++NG EGP R F + R V DER+TTV+A L VS K
Sbjct: 28 VVIGLPRSLNGREGPAAAKVRTFARELARRVQPVSVRLVDERMTTVTAAHGLRASGVSSK 87
Query: 131 KRIQKVDSIAAALILQEVLD 150
K VD AA +ILQ L+
Sbjct: 88 KGRSVVDQAAAVVILQSALE 107
>gi|322834236|ref|YP_004214263.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602]
gi|321169437|gb|ADW75136.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602]
Length = 142
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 31/151 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ + + D GTK IGLAI ++VT TA L SF + +
Sbjct: 3 NRTVFAFDFGTKSIGLAIG---------------QEVTGTARPLTSFKAQDGTPDWQKIE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E P R F N + + V DERL+TV A+
Sbjct: 48 KLLKEWLPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVQVELHDERLSTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
L D R VD+ +A +IL+ ++
Sbjct: 107 DLFDRGGFRALDKGSVDAASAVIILESWFEK 137
>gi|86131929|ref|ZP_01050526.1| Holliday junction resolvase-like protein [Dokdonia donghaensis
MED134]
gi|85817751|gb|EAQ38925.1| Holliday junction resolvase-like protein [Dokdonia donghaensis
MED134]
Length = 163
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID GTKR G+A++D + A + K + + L +++ E + A +IG P
Sbjct: 31 IIAIDYGTKRTGVAVTDELQLIASGLTTVPTKDIFKF---LATYLAEEKVEAMVIGEPKR 87
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN F ++ + + + DER T+ A Q +ID + +KKR K V
Sbjct: 88 MNNEASDVEEHIVRFRESVEKKHPELKIIRQDERFTSKMAFQTMIDSGIGKKKRQNKALV 147
Query: 137 DSIAAALILQEVL 149
D I+A +ILQ+ L
Sbjct: 148 DQISATIILQDYL 160
>gi|329120302|ref|ZP_08248970.1| crossover junction endodeoxyribonuclease [Neisseria bacilliformis
ATCC BAA-1200]
gi|327462643|gb|EGF08966.1| crossover junction endodeoxyribonuclease [Neisseria bacilliformis
ATCC BAA-1200]
Length = 153
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G KRIG+A AHP L Q + + I ++G
Sbjct: 8 PRGTCLAFDFGEKRIGVAQGSAETATAHPLSTLSGGSNEQKFAAIAALIREWQPDYLVVG 67
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E R F + +R +P F DER T++ A+ +L + V +K+
Sbjct: 68 LPVHSDGTEHELTRLARKFGRRLHER-FALPVYFADERHTSLLAESLLAEAQVFGRKQKS 126
Query: 135 KVDSIAAALILQEVLD 150
+DS+AA +IL + D
Sbjct: 127 VLDSVAAQVILFDFFD 142
>gi|148377681|ref|YP_001256557.1| putative Holliday junction resolvase [Mycoplasma agalactiae PG2]
gi|259495708|sp|A5IYK4|RUVX_MYCAP RecName: Full=Putative Holliday junction resolvase
gi|148291727|emb|CAL59113.1| Putative Holliday junction resolvase [Mycoplasma agalactiae PG2]
Length = 146
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 30/146 (20%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-------------- 66
S DLGTK G AISD +++ ALE + F+ +
Sbjct: 5 SFDLGTKTCGFAISDI-------------LEISANALETIRFVENDFNAVIVKVKEIIKM 51
Query: 67 ---NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
+I AF++G PL NGS+ R F + + + DE +T+ AQ+IL
Sbjct: 52 YQNSIDAFVLGYPLRSNGSKSERTMMVDNFAILLANEFPGINIYLVDEYGSTIKAQRILK 111
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVL 149
D +S KK K D+++A +IL + L
Sbjct: 112 DAKLSNKKTKSKKDTVSAVIILNDFL 137
>gi|284044489|ref|YP_003394829.1| Holliday junction resolvase YqgF [Conexibacter woesei DSM 14684]
gi|283948710|gb|ADB51454.1| Holliday junction resolvase YqgF [Conexibacter woesei DSM 14684]
Length = 133
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D G+ R G A+SDP A P + R + L++ + + ++GLPL
Sbjct: 3 VLALDYGSARCGCALSDPTGTLATPIAHVERPGTRKGMARLVALVRDREVDRVVVGLPLG 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
++G++ + RAF + + +P +DER TTV A+++ + D
Sbjct: 63 LSGADTAQTAEVRAFAQRLGEALGEQIPIDLYDERFTTVIAERV---------GGRESED 113
Query: 138 SIAAALILQEVLDR 151
S AAA++L+ L R
Sbjct: 114 SRAAAVLLEGWLVR 127
>gi|332142458|ref|YP_004428196.1| Holliday junction resolvase-like protein [Alteromonas macleodii
str. 'Deep ecotype']
gi|327552480|gb|AEA99198.1| Holliday junction resolvase-like protein [Alteromonas macleodii
str. 'Deep ecotype']
Length = 143
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GTK IG+A+ A P P L + + ++GLPLN
Sbjct: 9 VLAFDFGTKSIGVAVGQEITGTASPLPALKARDGIPDWNVIEKLYEEWQPHVVVVGLPLN 68
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E R F N + + V DERLTT A+ +L ++ +K KVDS
Sbjct: 69 MDGTEQEMTQRARKFA-NRLHGRFRVAVETCDERLTTTDAKSMLFELGGYKKLTKDKVDS 127
Query: 139 IAAALIL 145
++A +I
Sbjct: 128 VSACVIF 134
>gi|294788595|ref|ZP_06753837.1| putative Holliday junction resolvase [Simonsiella muelleri ATCC
29453]
gi|294483472|gb|EFG31157.1| putative Holliday junction resolvase [Simonsiella muelleri ATCC
29453]
Length = 154
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G RIG+A + AHP + + + + + IT ++GLP++ +
Sbjct: 17 AFDFGETRIGVAQGNREIAIAHPIATITGQSNEEKLIAIARLITQWQPEYLVVGLPVHAD 76
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E R F H + + + +P + DER +++ A+++L V KK +D +A
Sbjct: 77 GTEHEVTALARKFGHRL-NARFRLPIYWADERFSSLYAEELLKQAQVFGKKNKAVLDQVA 135
Query: 141 AALILQEVLD 150
A ILQ D
Sbjct: 136 AQAILQSFFD 145
>gi|167855791|ref|ZP_02478544.1| Holliday junction resolvase-like protein [Haemophilus parasuis
29755]
gi|167853070|gb|EDS24331.1| Holliday junction resolvase-like protein [Haemophilus parasuis
29755]
Length = 138
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 31/153 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
+Q + + D GT IG A+ + +T TA L +F + I +
Sbjct: 2 SQTVLAFDFGTNSIGCAVG---------------QSITGTAQGLSAFKAQDGIPNWEQIG 46
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E P + F + R +P DERLTTV A+
Sbjct: 47 KVIAQWQPDLLVVGLPLNMDGTEQPLTQRAKKFAKRLNGR-FNLPVELQDERLTTVEAKS 105
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ + + KVD+I+A LIL+ ++ S
Sbjct: 106 EIFTRGGFKALKKGKVDAISACLILESWFEQQS 138
>gi|213018933|ref|ZP_03334741.1| putative holliday junction resolvase [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
gi|212995884|gb|EEB56524.1| putative holliday junction resolvase [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
Length = 136
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
+D+G K+IG+A SD + A R+ +++ L L+ + EN A + +IGLP +
Sbjct: 2 CLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKD-LGYLNRVLKENEAGSMVIGLPFTI 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL--IDMNVSRKKRIQKVD 137
+ E F + +I +K V DE L+T A L +++++ K+I D
Sbjct: 61 DEQETEWCKVIIQFANKII-KKCKVHIYLQDESLSTSLATHALKITGISITKSKKID--D 117
Query: 138 SIAAALILQEVLDRIS 153
IAA +ILQ LD+I+
Sbjct: 118 KIAACIILQRTLDKIN 133
>gi|238918247|ref|YP_002931761.1| hypothetical protein NT01EI_0284 [Edwardsiella ictaluri 93-146]
gi|259495703|sp|C5BCS0|RUVX_EDWI9 RecName: Full=Putative Holliday junction resolvase
gi|238867815|gb|ACR67526.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 140
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 31/147 (21%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
I + D GT+ IG AI +++T +A L SF + + +
Sbjct: 6 ILAFDFGTRSIGCAIG---------------QELTGSARPLQSFKANDGVPDWQQIEKVL 50
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLPLNM+GSE P R F N + + V DERL+TV A+ L
Sbjct: 51 REWQPDLVVVGLPLNMDGSEQPLTQQARKFA-NRLHGRFGVQIALQDERLSTVEARAHLF 109
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
R +VD+ +AALIL+ +
Sbjct: 110 AGGGYRALEKGRVDAASAALILESWFE 136
>gi|212636354|ref|YP_002312879.1| Holliday junction resolvase-like protein [Shewanella piezotolerans
WP3]
gi|212557838|gb|ACJ30292.1| Holliday junction resolvase, putative [Shewanella piezotolerans
WP3]
Length = 140
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFII 73
++ + D GTK IG+AI + A RP L K V E+ + IT ++
Sbjct: 3 SKTVLGFDYGTKSIGIAIGQ--QLTASARPLLSIKAVDGIPKWEEIGAIITEWKPDLIVV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+G+E + F N ++ + V V DERLTT A+ L +M +
Sbjct: 61 GLPLNMDGTEQDITLRAKKF-GNRLNGRFGVKVVTQDERLTTADAKARLFEMGGYKALTK 119
Query: 134 QKVDSIAAALILQEVLD 150
+VD+++A LI++ +
Sbjct: 120 GQVDAMSAVLIIESYFE 136
>gi|24374858|ref|NP_718901.1| Holliday junction resolvase-like protein [Shewanella oneidensis
MR-1]
gi|32130031|sp|Q8EBZ8|RUVX_SHEON RecName: Full=Putative Holliday junction resolvase
gi|24349553|gb|AAN56345.1|AE015772_5 conserved hypothetical protein TIGR00250 [Shewanella oneidensis
MR-1]
Length = 141
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIG 74
+ + D GTK IG+A+ + A P L K V E+ I ++G
Sbjct: 4 KTVLGFDFGTKSIGVAVGQ--QITASATPLLSIKAVDGIPNWEEIAKLIQEWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E H R F N ++ K V DERLTT A+ L ++ +
Sbjct: 62 LPLNMDGTEQEMTHRARKFA-NRLNAKFGVKIFTQDERLTTTDAKARLFELGGYKALTKG 120
Query: 135 KVDSIAAALILQEVLD 150
+VD+++A LI++ +
Sbjct: 121 QVDAVSAVLIIESYFE 136
>gi|312622551|ref|YP_004024164.1| holliday junction resolvase yqgf [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203018|gb|ADQ46345.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
kronotskyensis 2002]
Length = 138
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G R+G+AISDP + A P + + EL NI +IG PL+
Sbjct: 3 ILCLDIGNSRVGVAISDPLKITAQP-VMTIELRNKDLFEELDKIFQGYNIEKVVIGYPLS 61
Query: 79 -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136
++ + + I+ + V V WDER +T + ++++ ++N RKK+I +
Sbjct: 62 KLHPDQKDEKLKKIDEISEKIESRYNVEIVKWDERFSTKAVERVIDEELNWKRKKKI--I 119
Query: 137 DSIAAALILQEVLD 150
D +AA ILQ LD
Sbjct: 120 DKVAAVYILQGYLD 133
>gi|294783330|ref|ZP_06748654.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
1_1_41FAA]
gi|294480208|gb|EFG27985.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
1_1_41FAA]
Length = 138
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A SD A P + RKKV ++ + N + ++G+P +++
Sbjct: 6 ALDIGDVRIGVARSDLMGIIATPLETINRKKV-KSVKRIAELCKENNTTSIVVGIPKSLD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKVD 137
G E + R ++ + + + DER +TV A IL D+N + K+++ VD
Sbjct: 65 GEEKRQAEKVREYIEKLKKEIEDLEIIEIDERFSTVIADNILKDLNKNGAIEKRKV--VD 122
Query: 138 SIAAALILQEVLD 150
+AA++ILQ LD
Sbjct: 123 KVAASIILQTYLD 135
>gi|254784479|ref|YP_003071907.1| Holliday junction resolvase-like protein [Teredinibacter turnerae
T7901]
gi|237687105|gb|ACR14369.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
Length = 146
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ + I + D GT+ IG+A+ + A P L K +L + ++
Sbjct: 5 RSEETILAFDFGTRSIGVAVGQTLTQSASELPTLKAKDGIPDWQQLEQLFSDWRPNLVVV 64
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+NM+GSE R F N ++ + F+DERLTT +A++ R
Sbjct: 65 GLPVNMDGSEMEMTRRARKF-GNRLNGRFNQTVAFFDERLTTRAAKEEAAAHGHRGNYRA 123
Query: 134 QKVDSIAAALILQ 146
+ VDSIAA LIL+
Sbjct: 124 KPVDSIAARLILE 136
>gi|237739615|ref|ZP_04570096.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
2_1_31]
gi|262066711|ref|ZP_06026323.1| putative Holliday junction resolvase [Fusobacterium periodonticum
ATCC 33693]
gi|229423223|gb|EEO38270.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
2_1_31]
gi|291379510|gb|EFE87028.1| putative Holliday junction resolvase [Fusobacterium periodonticum
ATCC 33693]
Length = 138
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A SD A P + RKKV ++ + N + ++G+P +++
Sbjct: 6 ALDIGDVRIGVARSDLMGIIATPLETINRKKV-KSVKRIAELCKENNTTSIVVGIPKSLD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKVD 137
G E + R ++ + + + DER +TV A IL D+N + K+++ VD
Sbjct: 65 GEEKRQAEKVREYIEKLKKEIENLEIIEIDERFSTVIADNILKDLNKNGAIEKRKV--VD 122
Query: 138 SIAAALILQEVLD 150
+AA++ILQ LD
Sbjct: 123 KVAASIILQTYLD 135
>gi|126175222|ref|YP_001051371.1| Holliday junction resolvase-like protein [Shewanella baltica OS155]
gi|153001548|ref|YP_001367229.1| Holliday junction resolvase-like protein [Shewanella baltica OS185]
gi|160876284|ref|YP_001555600.1| Holliday junction resolvase-like protein [Shewanella baltica OS195]
gi|217972523|ref|YP_002357274.1| Holliday junction resolvase-like protein [Shewanella baltica OS223]
gi|304410066|ref|ZP_07391685.1| Holliday junction resolvase YqgF [Shewanella baltica OS183]
gi|307302222|ref|ZP_07581980.1| Holliday junction resolvase YqgF [Shewanella baltica BA175]
gi|125998427|gb|ABN62502.1| Holliday junction resolvase YqgF [Shewanella baltica OS155]
gi|151366166|gb|ABS09166.1| Holliday junction resolvase YqgF [Shewanella baltica OS185]
gi|160861806|gb|ABX50340.1| Holliday junction resolvase YqgF [Shewanella baltica OS195]
gi|217497658|gb|ACK45851.1| Holliday junction resolvase YqgF [Shewanella baltica OS223]
gi|304351475|gb|EFM15874.1| Holliday junction resolvase YqgF [Shewanella baltica OS183]
gi|306914260|gb|EFN44681.1| Holliday junction resolvase YqgF [Shewanella baltica BA175]
gi|315268473|gb|ADT95326.1| Holliday junction resolvase YqgF [Shewanella baltica OS678]
Length = 141
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 31/150 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
++ + D GTK IG+AI +++T +A LLS + I +
Sbjct: 3 SKTVLGFDFGTKSIGVAIG---------------QEITASATPLLSIKAVDGIPNWDQIG 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E H R F N I+ K V DERLTT A+
Sbjct: 48 DLIKEWQPDLVVVGLPLNMDGTEQDMTHRARKFA-NRINAKFKVKIATQDERLTTTDAKA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L ++ + +VD+++A LI++ +
Sbjct: 107 RLFELGGFKALTKGQVDAVSAVLIIESYFE 136
>gi|296120376|ref|YP_003628154.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM
3776]
gi|296012716|gb|ADG65955.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM
3776]
Length = 199
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
+D G KR+GLAIS + A P RK + + +A ++GLPL+ +G
Sbjct: 32 VDYGQKRVGLAISTFEQTLAMPMEIYQRKSESVDREWFKATCLDYRVAGLVVGLPLHTSG 91
Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
E R F + R +P FWDER T+VSA+ ++ V
Sbjct: 92 EESELSREVRQF-GEWLARCTNLPLRFWDERYTSVSAELLMWQDGV 136
>gi|296117816|ref|ZP_06836399.1| putative Holliday junction resolvase [Corynebacterium ammoniagenes
DSM 20306]
gi|295969047|gb|EFG82289.1| putative Holliday junction resolvase [Corynebacterium ammoniagenes
DSM 20306]
Length = 175
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 19/148 (12%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
+D+GT RIG+A+SD R A P + R+ + + + LL+ I+ I ++GL
Sbjct: 21 GLDVGTVRIGVAVSDRDARLAMPVETVPRETGLKDSDKADIDKLLAIISEYAIVEIVVGL 80
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV-------------FWDERLTTVSAQQIL 122
P ++ G+ V + + R++ PF DERLTTV+A L
Sbjct: 81 PRDLQGNGSASVKHAKEIAFRL-KRRLNKPFAPDPTPPHPVPVVRMGDERLTTVAATTAL 139
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150
VS KK +D AA ILQ LD
Sbjct: 140 RASGVSEKKGRAVIDQAAAVEILQSWLD 167
>gi|304413317|ref|ZP_07394790.1| Holliday junction resolvase-like protein [Candidatus Regiella
insecticola LSR1]
gi|304284160|gb|EFL92553.1| Holliday junction resolvase-like protein [Candidatus Regiella
insecticola LSR1]
Length = 140
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG+AI A L + L++ + ++GL
Sbjct: 3 NRTIMAFDFGTKSIGVAIGQTITGTATALSALKARDGIPDWLQVEKLLGEWQPELVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N + + V DERL+TV+A+ L + R
Sbjct: 63 PLNMDGTEQPLTSRARKFA-NRLHSRFNVKIALHDERLSTVAARAHLFNHGGYRALDKGN 121
Query: 136 VDSIAAALIL 145
VD+ +AA+IL
Sbjct: 122 VDAASAAVIL 131
>gi|148360766|ref|YP_001251973.1| putative ribonuclease [Legionella pneumophila str. Corby]
gi|148282539|gb|ABQ56627.1| putative ribonuclease with RNase H fold; smart00732 [Legionella
pneumophila str. Corby]
Length = 142
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D G KRIG+A+ A P + K + IT N A I+GLP ++
Sbjct: 11 GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCID 70
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
E + R F + ++ +P DERL+TV A+ L + R+ + +VDSIA
Sbjct: 71 DRELYTTSAARCFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 129
Query: 141 AALILQEVLDR 151
A +IL++ L +
Sbjct: 130 ACVILEQWLQQ 140
>gi|270159103|ref|ZP_06187759.1| putative Holliday junction resolvase [Legionella longbeachae
D-4968]
gi|289166062|ref|YP_003456200.1| Holliday junction resolvase [Legionella longbeachae NSW150]
gi|269987442|gb|EEZ93697.1| putative Holliday junction resolvase [Legionella longbeachae
D-4968]
gi|288859235|emb|CBJ13169.1| Holliday junction resolvase [Legionella longbeachae NSW150]
Length = 139
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ D G KRIG+A+ A P L + + I + A ++G
Sbjct: 2 PSSVYLGFDFGYKRIGVAVGQQLTCSASPLATLSARSGVPNWDAVAKVIAQWSPQALVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+P ++GSE R F + R V +P DERL+TV+A++ L RK +
Sbjct: 62 IPTCIDGSELYTTVPARRFAQELHKRFV-LPVHLVDERLSTVAAREQLFAQGGYRKIKQS 120
Query: 135 KVDSIAAALILQEVLDR 151
+VDS+AA +IL++ L
Sbjct: 121 EVDSVAACVILEQWLQH 137
>gi|37525150|ref|NP_928494.1| Holliday junction resolvase-like protein [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|62901002|sp|Q7N7G7|RUVX_PHOLL RecName: Full=Putative Holliday junction resolvase
gi|36784576|emb|CAE13476.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 139
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ I + D GT+ IG AI +++T TA L SF T+ I +
Sbjct: 3 NRTIMAFDFGTRSIGAAIG---------------QEITGTARALTSFKATDGIPNWGQIE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I+GLPLNM+G+E R F N + + V DERLTTV A+
Sbjct: 48 KLLKEWQPDLVIVGLPLNMDGTEQFVTVQARKFA-NRLHGRFGVQVQLQDERLTTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
L D + KVD+ +A +IL+ ++
Sbjct: 107 HLFDRGGYKALNKGKVDATSAVIILESWFEQ 137
>gi|225021331|ref|ZP_03710523.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii
ATCC 33806]
gi|224945713|gb|EEG26922.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii
ATCC 33806]
Length = 174
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 10/148 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALE-LLSFITTENIAAFIIGL 75
+D+GT RIG+A+S A P + R K ++ ++ L++ IT ++ I+GL
Sbjct: 21 GVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSDIDRLITLITDNDVVEVIVGL 80
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
P ++ G+ V + + R ++ +P DERL+TV A Q L VS K
Sbjct: 81 PRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADERLSTVVAHQALRASGVSEKS 140
Query: 132 RIQKVDSIAAALILQEVLD-RISFLESS 158
+ +D AA ILQ LD R ++L +
Sbjct: 141 GRKIIDQAAAVEILQSWLDGRTNYLHRT 168
>gi|319957356|ref|YP_004168619.1| holliday junction resolvase yqgf [Nitratifractor salsuginis DSM
16511]
gi|319419760|gb|ADV46870.1| Holliday junction resolvase YqgF [Nitratifractor salsuginis DSM
16511]
Length = 130
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
IA++D+G KRIG+AIS P R P+ + R+ Q A EL F+ + ++GLP
Sbjct: 2 IAAVDVGLKRIGVAIS-PDGRIVLPQRAIERRGRKQAAKELSDFLREWKVDLLVVGLPRG 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
SE R FV ++++ + + DE ++ A++ + R+KR ++DS
Sbjct: 61 -GSSEEEMERRIRHFV-SLLELPPQMEVHYQDEAGSSEEAKERM--QGAIRQKRDGRIDS 116
Query: 139 IAAALILQEVLDR 151
+AA +IL+ L+R
Sbjct: 117 LAAQIILERWLER 129
>gi|227496181|ref|ZP_03926487.1| possible Holliday junction resolvase [Actinomyces urogenitalis DSM
15434]
gi|226834264|gb|EEH66647.1| possible Holliday junction resolvase [Actinomyces urogenitalis DSM
15434]
Length = 160
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D+G R+G+A D A P L R + E + ++GLP+ ++
Sbjct: 10 AFDVGKARVGVARCDADAILAVPECTLTRDRYGADLEEAADLVEDYEAIEVVVGLPIQLS 69
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G R + + R VP DERL+TVSA Q L K VD A
Sbjct: 70 GGSTASTRDARGWARQLAARVGPVPVRLVDERLSTVSAHQALHGSGRHAKDFRPVVDQAA 129
Query: 141 AALILQEVLD 150
A +IL++ L+
Sbjct: 130 AVVILEQALE 139
>gi|269123199|ref|YP_003305776.1| Holliday junction resolvase YqgF [Streptobacillus moniliformis DSM
12112]
gi|268314525|gb|ACZ00899.1| Holliday junction resolvase YqgF [Streptobacillus moniliformis DSM
12112]
Length = 142
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G RIG+A SD FA ++ + +T + I +E + A ++GLP +
Sbjct: 6 GLDIGDVRIGVAKSDGLAMFASSYE-VIDRNITDPFERIKEIINSEKVIALVLGLPKTKD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRK---KRI 133
G +V FV + K+++P + DER TT A+ L N S+K +R
Sbjct: 65 GQNSIQVEKIERFVSEL---KLFIPENLPIHYIDERYTTKEAEYYL--KNFSKKNGKERR 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ VD +AA +ILQ LD+
Sbjct: 120 KVVDMVAAQIILQNFLDK 137
>gi|127512076|ref|YP_001093273.1| Holliday junction resolvase-like protein [Shewanella loihica PV-4]
gi|126637371|gb|ABO23014.1| Holliday junction resolvase YqgF [Shewanella loihica PV-4]
Length = 139
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK IG+AI A P L E+ + I ++GLPLN
Sbjct: 6 VLGFDFGTKSIGVAIGQQITGSATPLASLKANDGIPRWEEIEALIQEWKPDLIVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E R F N I + V DERLTT A+ L +M + +VDS
Sbjct: 66 MDGTEQEMTQRARKFA-NRISGRFGVKTATQDERLTTADAKARLFEMGGYKALSKGQVDS 124
Query: 139 IAAALILQEVLDRI 152
++A LI++ + +
Sbjct: 125 MSAVLIIESYFENL 138
>gi|134294911|ref|YP_001118646.1| Holliday junction resolvase-like protein [Burkholderia
vietnamiensis G4]
gi|167012706|sp|A4JC08|RUVX_BURVG RecName: Full=Putative Holliday junction resolvase
gi|134138068|gb|ABO53811.1| Holliday junction resolvase YqgF [Burkholderia vietnamiensis G4]
Length = 149
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 7/139 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G KRIG+A+ + R A P L R+ + ELL+ + A ++GLP+
Sbjct: 13 AFDYGEKRIGVALGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPD---ALVVGLPM 69
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ + F N ++ + +P + DER ++V A+ L + NV + R +D
Sbjct: 70 HPDGTPHDMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARTDMLD 128
Query: 138 SIAAALILQEVLDRISFLE 156
+ AA +ILQ+ D +S E
Sbjct: 129 AEAARVILQQYFDELSDHE 147
>gi|304313296|ref|YP_003812894.1| Putative holliday junction resolvase [gamma proteobacterium HdN1]
gi|301799029|emb|CBL47272.1| Putative holliday junction resolvase [gamma proteobacterium HdN1]
Length = 148
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 14/144 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D GT IG+A+ A L + L++ I AFI+G+PLNM+
Sbjct: 8 GFDYGTTVIGVAVGQTVTGTASALALLPARDGVPDWLQVELLIQEWQPDAFIVGIPLNMD 67
Query: 81 GSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---QK 135
G+E R F + + RK + P DERL+T A Q L + K+ + Q+
Sbjct: 68 GTETILAPRARKFGNRLTGRFRKPWFPV---DERLSTREAWQALESQHQLHKRALRGNQR 124
Query: 136 VDSIAAALILQEVLDRISFLESSK 159
VD++AAALIL S+LES K
Sbjct: 125 VDAVAAALILG------SWLESHK 142
>gi|163756827|ref|ZP_02163936.1| Holliday junction resolvase-like protein [Kordia algicida OT-1]
gi|161323216|gb|EDP94556.1| Holliday junction resolvase-like protein [Kordia algicida OT-1]
Length = 135
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
I +ID G KR G+A++D + A VR T ++ L ++ EN+ F+IG P
Sbjct: 4 ILAIDYGKKRTGIAVTDEMQLIASGLT-TVR---THDLIKFLKEYVAKENVELFLIGEPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
MN + F+ + +P DER T+ A Q +ID + +K+R K
Sbjct: 60 QMNNEASESEALIKEFIRLLTKALPAIPIKRVDERFTSKMAFQTMIDSGLKKKQRQNKSL 119
Query: 136 VDSIAAALILQEVL 149
+D I+A +ILQ L
Sbjct: 120 IDEISATIILQSYL 133
>gi|293390910|ref|ZP_06635244.1| Holliday junction resolvase-like protein [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951444|gb|EFE01563.1| Holliday junction resolvase-like protein [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 139
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GTK IG A+ A P + + I A ++GLPLN
Sbjct: 5 VLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIEKCIQEWQPARIVVGLPLN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E P + F + R +P DERLTT A+ + R KVD
Sbjct: 65 MDGTEQPLTLRAKKFAKRLHGR-FNIPVDLQDERLTTTEARSEIFSRGGYRALNKSKVDG 123
Query: 139 IAAALILQEVLDRIS 153
I+A LIL+ + +
Sbjct: 124 ISACLILESWFENYA 138
>gi|224437002|ref|ZP_03657983.1| Holliday junction resolvase-like protein [Helicobacter cinaedi CCUG
18818]
gi|313143475|ref|ZP_07805668.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313128506|gb|EFR46123.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 140
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D+G KRIGLA++ G P ++RK Q + EL + T I ++GL
Sbjct: 3 NKKILACDVGLKRIGLAVTQLG--IILPIEPIIRKNRNQASKELSEILKTREIEILVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +G E + + +H + + DE T++ A Q M V + +IQK
Sbjct: 61 P---SGGEAGHSDTRKRILHFVGLVAFGGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQK 117
Query: 136 ---VDSIAAALILQEVLD 150
+DS++A LIL+ L+
Sbjct: 118 DGRLDSLSATLILERFLE 135
>gi|46014949|pdb|1NU0|A Chain A, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of
Yqgf From Escherichia Coli, A Hypothetical Protein
gi|46014950|pdb|1NU0|B Chain B, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of
Yqgf From Escherichia Coli, A Hypothetical Protein
Length = 138
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GTK IG+A+ A P P + + T + + I+GLPLN
Sbjct: 5 LXAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+E P R F N I + V DERL+TV A+ L + R KVDS
Sbjct: 65 XDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDS 123
Query: 139 IAAALILQEVLDR 151
+A +IL+ ++
Sbjct: 124 ASAVIILESYXEQ 136
>gi|116670824|ref|YP_831757.1| Holliday junction resolvase YqgF [Arthrobacter sp. FB24]
gi|116610933|gb|ABK03657.1| Holliday junction resolvase YqgF [Arthrobacter sp. FB24]
Length = 199
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+D+GT R+G+A+ D A P L R T + +L+ + +E +GLP +
Sbjct: 17 GVDVGTVRVGVAVCDRDGILATPLKTLERNAKKNTDVRVLAGLASELGAVQVFVGLPRTL 76
Query: 80 NGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
G E + + + R +P DERL+TV+A + L + +S + +
Sbjct: 77 KGEEHASARMATDYAELLAEALAARGSDIPVQLVDERLSTVTAHRNLHEAGMSSRNHRKV 136
Query: 136 VDSIAAALILQEVLD 150
VD +AAA ILQ +D
Sbjct: 137 VDQVAAAGILQHAID 151
>gi|71064637|ref|YP_263364.1| hypothetical protein Psyc_0056 [Psychrobacter arcticus 273-4]
gi|146325593|sp|Q4FVM8|RUVX_PSYA2 RecName: Full=Putative Holliday junction resolvase
gi|71037622|gb|AAZ17930.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 177
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
++KP+ I ++D G K++G+A+ + A L LL I +A
Sbjct: 23 AIKPHL-ILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKV 81
Query: 72 IIGLPLNMNGSE---GPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
++GLPLNM+GS R H R H ++++ + V DERLT+V+A++I +
Sbjct: 82 VVGLPLNMDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGW 141
Query: 128 SRKKRIQKVDSIAAALILQ 146
+ +R +D I+A +++
Sbjct: 142 IQNER-DPIDDISACILMS 159
>gi|296139684|ref|YP_003646927.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM
20162]
gi|296027818|gb|ADG78588.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM
20162]
Length = 161
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G RIG+A+SDP A P + + + +T +IGLP +
Sbjct: 14 ALDVGKARIGVAVSDPDGILATPVETVKAARDGSDLRRIAQLVTDYEPVEIVIGLPRTLR 73
Query: 81 GSEGPRVHSTRAF------VHNMIDRKVYVPFV-FWDERLTTVSAQQILIDMNVSRKKRI 133
G G F V + D+ P V F DER TTV+AQ+ L D V K++
Sbjct: 74 GDRGESARMAEGFAARLATVLDATDQPS--PRVCFSDERFTTVTAQRALRDNGVRAKEQR 131
Query: 134 QKVDSIAAALILQEVLD 150
+D AA ILQ LD
Sbjct: 132 AVIDQAAAVAILQGWLD 148
>gi|152990631|ref|YP_001356353.1| Holliday junction resolvase-like protein [Nitratiruptor sp.
SB155-2]
gi|151422492|dbj|BAF69996.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 130
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
IA+ID+G KRIG AI G+ P+ ++RK Q A ++ SF+ NI ++G+P
Sbjct: 5 IAAIDVGLKRIGTAICLDGK-IVLPQTPIIRKNRNQAARDVSSFLREWNIDTLVVGIP-- 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+ + A +++D V FV DE T+ A++ V + K+ K+DS
Sbjct: 62 -DGTSKEEMQRRIAHFVSLLDFDGVVEFV--DEGFTSHEAKEAT--KGVIKHKKDGKIDS 116
Query: 139 IAAALILQEVL 149
IAA IL+ L
Sbjct: 117 IAAQKILERWL 127
>gi|304396757|ref|ZP_07378637.1| Holliday junction resolvase YqgF [Pantoea sp. aB]
gi|304355553|gb|EFM19920.1| Holliday junction resolvase YqgF [Pantoea sp. aB]
Length = 139
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D GTK IG+A+ A P L + L + + ++GLP
Sbjct: 4 QTLLGFDFGTKSIGVAVGQQLTGSARPLTALKAQDGIPDWLVIEKLLKEWQPDFVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P R F N + + + DERL+TV A+ L + R V
Sbjct: 64 LNMDGTEQPLTDRARKFA-NRLHGRFGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122
Query: 137 DSIAAALILQEVLD 150
DS +AA+ILQ+ +
Sbjct: 123 DSQSAAIILQDWFE 136
>gi|228470009|ref|ZP_04054925.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
gi|228308390|gb|EEK17228.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
Length = 143
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 15 PNQPIASIDLGTKRIGLAISD-----PGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
P I +ID GTKR GLA++D PG P L+ L ++ E +
Sbjct: 2 PMARILAIDYGTKRTGLAVTDSLQITPGALDTVPTHQLLNY--------LADYLGREEVE 53
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++G P M+ + + +A + + + DER T+V AQQ + + + +
Sbjct: 54 TIVLGKPTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGK 113
Query: 130 KKRIQK---VDSIAAALILQEVLDRISFLE 156
++R Q VD ++A +ILQ L+ + L
Sbjct: 114 QRRRQDKGLVDRVSATIILQSYLESLRMLH 143
>gi|91776452|ref|YP_546208.1| Holliday junction resolvase-like protein [Methylobacillus
flagellatus KT]
gi|124107442|sp|Q1GZH0|RUVX_METFK RecName: Full=Putative Holliday junction resolvase
gi|91710439|gb|ABE50367.1| Holliday junction resolvase YqgF [Methylobacillus flagellatus KT]
Length = 146
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G KRIG+AI + AHP + + + + I ++GLP
Sbjct: 12 VLGFDFGEKRIGVAIGEHLLGIAHPLVTIDAEANDKRFAAIAGLIEEWQPEMLVVGLPSY 71
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+NG E R F + R +P DERL++ A Q L +S +K+ +D
Sbjct: 72 LNGDEHALTQLCRKFARRLEGR-FNLPVQLVDERLSSAEASQTLKQSGISGRKQKSVLDQ 130
Query: 139 IAAALILQEVLDRIS 153
+AA ILQ D ++
Sbjct: 131 VAAQHILQSYFDGLA 145
>gi|315635115|ref|ZP_07890393.1| crossover junction endodeoxyribonuclease [Aggregatibacter segnis
ATCC 33393]
gi|315476077|gb|EFU66831.1| crossover junction endodeoxyribonuclease [Aggregatibacter segnis
ATCC 33393]
Length = 139
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GTK IG A+ A P + + I ++GLPLN
Sbjct: 5 VIAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWEAIEKCIQDWQPERLVVGLPLN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E P + F N + + +P DERLTT A+ + R KVD
Sbjct: 65 MDGTEQPLTLRAKKFA-NRLHGRFNLPVELQDERLTTTEARSEIFGRGGYRALNKSKVDG 123
Query: 139 IAAALILQEVLDRIS 153
I+A LIL+ ++
Sbjct: 124 ISACLILESWFEQYC 138
>gi|308189957|ref|YP_003922888.1| Holliday junction resolvase [Mycoplasma fermentans JER]
gi|319777239|ref|YP_004136890.1| putative holliday junction resolvase [Mycoplasma fermentans M64]
gi|307624699|gb|ADN69004.1| putative Holliday junction resolvase [Mycoplasma fermentans JER]
gi|318038314|gb|ADV34513.1| Putative Holliday junction resolvase [Mycoplasma fermentans M64]
Length = 144
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 10/136 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78
++DLGTK G AISD G A L ++ A+ ++ + T I ++G PL
Sbjct: 5 ALDLGTKTCGFAISDEGMIIASALETLHFEENDFNAIIEQIKIYQKTYKIDKLVLGKPLR 64
Query: 79 MNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
N + R +F H + D K+Y +E TT++A IL + +S KKR
Sbjct: 65 SNNTSSERTVLFESFAHKLKGIFKDYKIYQV----NEYGTTIAATNILKEAKLSIKKRKA 120
Query: 135 KVDSIAAALILQEVLD 150
D+++A LILQE L+
Sbjct: 121 HKDTLSAVLILQEFLN 136
>gi|297195517|ref|ZP_06912915.1| Holliday junction resolvase YqgF [Streptomyces pristinaespiralis
ATCC 25486]
gi|297152827|gb|EDY66041.2| Holliday junction resolvase YqgF [Streptomyces pristinaespiralis
ATCC 25486]
Length = 135
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLP +++G EGP R+F + VP DER+TTV+A Q L V K
Sbjct: 39 VVVGLPRSLSGREGPAAKKIRSFAQTLAQGVKPVPVRLVDERMTTVTATQGLRASGVKSK 98
Query: 131 KRIQKVDSIAAALILQEVLD 150
K +D AA +ILQ L+
Sbjct: 99 KGRSVIDQAAAVVILQNALE 118
>gi|253990752|ref|YP_003042108.1| Holliday junction resolvase-like protein [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|211639083|emb|CAR67695.1| Putative Holliday junction resolvase [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253782202|emb|CAQ85366.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 139
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ I + D GT+ IG AI +++T TA L SF T+ I +
Sbjct: 3 NRTIMAFDFGTRSIGAAIG---------------QEITGTARALTSFKATDGIPNWQQIE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I+GLPLNM+G+E R F N + + V DERLTTV A+
Sbjct: 48 KLLKEWQPDLVIVGLPLNMDGTEQFVTIQARKFA-NRLHGRFGVQVELQDERLTTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
L D + KVD+ +A +IL+ ++
Sbjct: 107 HLFDRGGYKALDKGKVDATSAVIILESWFEQ 137
>gi|329296973|ref|ZP_08254309.1| Holliday junction resolvase YqgF [Plautia stali symbiont]
Length = 138
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-LELLSFITTE-NIAAFII 73
++ + D GTK IG+AI + RP K T EL+ + E ++
Sbjct: 3 SETLLGFDFGTKSIGVAIGQ--QLTGTARPLTALKAQDGTPDWELIGKLLKEWRPDCVVV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+GSE P R F N + + V DERL+TV A+ L + R +
Sbjct: 61 GLPLNMDGSEQPLTARARKFA-NRLHGRFGVRVELQDERLSTVEARADLFERGGYRALQK 119
Query: 134 QKVDSIAAALILQEVLD 150
+DS +A +ILQ+ +
Sbjct: 120 GHIDSQSAVIILQDWFE 136
>gi|315635642|ref|ZP_07890905.1| Holliday junction resolvase family protein [Arcobacter butzleri
JV22]
gi|315479939|gb|EFU70609.1| Holliday junction resolvase family protein [Arcobacter butzleri
JV22]
Length = 126
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 16/134 (11%)
Query: 19 IASIDLGTKRIGLAI---SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ASID+G KRIG+AI SD P+ ++RK Q A ++ +F+ I I+G
Sbjct: 3 LASIDVGLKRIGVAICLTSD----IVTPQNAILRKNRNQAANDVNTFLKEWEIEKLIVGF 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + + H FV+ + K+ +P+ F +E ++++ A++ LI + + KR +
Sbjct: 59 PTSSEDMQNRIKH----FVNLL---KLQIPYEFCEENMSSIEAEE-LIKGEI-KYKRDGR 109
Query: 136 VDSIAAALILQEVL 149
VDS+AA +IL+ L
Sbjct: 110 VDSLAAKIILERYL 123
>gi|238809908|dbj|BAH69698.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 145
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 10/136 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLN 78
++DLGTK G AISD G A L ++ A+ ++ + T I ++G PL
Sbjct: 6 ALDLGTKTCGFAISDEGMIIASALETLHFEENDFNAIIEQIKIYQKTYKIDKLVLGKPLR 65
Query: 79 MNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
N + R +F H + D K+Y +E TT++A IL + +S KKR
Sbjct: 66 SNNTSSERTVLFESFAHKLKGIFKDYKIYQV----NEYGTTIAATNILKEAKLSIKKRKA 121
Query: 135 KVDSIAAALILQEVLD 150
D+++A LILQE L+
Sbjct: 122 HKDTLSAVLILQEFLN 137
>gi|171322539|ref|ZP_02911329.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MEX-5]
gi|171092132|gb|EDT37543.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MEX-5]
Length = 149
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV-----RKKVTQTALELLSFITTENIAAFIIGL 75
+ D G KRIG+AI + R A R +V R+ + +LL+ + A ++GL
Sbjct: 13 AFDYGEKRIGVAIGNALTRSA--RALVVISNLNREHRFKAVGDLLAEWRPD---ALVVGL 67
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P++ +G+ + F N ++ + +P + DER ++V A+ L + NV + R +
Sbjct: 68 PMHPDGTPHEMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEM 126
Query: 136 VDSIAAALILQEVLDRISFLE 156
+D+ AA +ILQ+ LD++S E
Sbjct: 127 LDAEAARVILQQYLDQLSDHE 147
>gi|83319719|ref|YP_424202.1| holliday junction resolvase, putative [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
gi|146325579|sp|Q2SSR1|RUVX_MYCCT RecName: Full=Putative Holliday junction resolvase
gi|83283605|gb|ABC01537.1| holliday junction resolvase, putative [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
Length = 143
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 7/139 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q I + D+G+K IGLA S + Q +L ++ N + ++G P
Sbjct: 3 QSIIAFDIGSKTIGLAYSSGVIASSLDTIRFEEYNFDQGLKQLELYLKKYNPSIIVVGYP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-----VFWDERLTTVSAQQILIDMNVSRKK 131
NMN + G R + +D +Y F + DER TT A+ ILI N++R+K
Sbjct: 63 KNMNNTIGERAEMVDYVIEMFLD--MYKSFNKDQIIKVDERRTTKIAKNILIQANLTREK 120
Query: 132 RIQKVDSIAAALILQEVLD 150
+ + DS+AA LIL+ L+
Sbjct: 121 QKKYKDSLAAQLILELYLE 139
>gi|87120930|ref|ZP_01076822.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121]
gi|86163768|gb|EAQ65041.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121]
Length = 152
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLN 78
D GT RIG+A+ A P P R + + ++ + E F++GLPLN
Sbjct: 19 GFDFGTTRIGIAVGQEITATATPINPIKARDGIPN--WDTIAEVVKEWQPDGFVVGLPLN 76
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E R F N + + P DERL++ A+ +I +R + VD
Sbjct: 77 MDGTENEMCQRARKFA-NRLHGRYNKPSYMMDERLSSYEAKGQVIKEGGNRNFKANSVDG 135
Query: 139 IAAALILQ 146
+AA +IL+
Sbjct: 136 LAAQMILE 143
>gi|74318598|ref|YP_316338.1| Holliday junction resolvase-like protein [Thiobacillus
denitrificans ATCC 25259]
gi|146325622|sp|Q3SFS3|RUVX_THIDA RecName: Full=Putative Holliday junction resolvase
gi|74058093|gb|AAZ98533.1| Holliday junction resolvase YqgF [Thiobacillus denitrificans ATCC
25259]
Length = 145
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFI 72
+ + + + DLG KR G+A + AHP +++ + T + + + E A F+
Sbjct: 5 QTHGTVLAFDLGLKRTGVASGELAIGIAHPLT-VIQAESTDARMAAIEKLAAEWQPALFV 63
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP +GSE R F + + + P DERLT+ +A+ L + KK
Sbjct: 64 LGLPTRADGSENEMTRVARNFARRL-ESRFERPVFLIDERLTSATAESELHARGIHGKKN 122
Query: 133 IQKVDSIAAALILQEVLD 150
D++AA LILQ D
Sbjct: 123 KALTDAVAAQLILQGFFD 140
>gi|300858566|ref|YP_003783549.1| hypothetical protein cpfrc_01149 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686020|gb|ADK28942.1| hypothetical protein cpfrc_01149 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206278|gb|ADL10620.1| Putative Holliday junction resolvase [Corynebacterium
pseudotuberculosis C231]
gi|302330835|gb|ADL21029.1| Putative Holliday junction resolvase [Corynebacterium
pseudotuberculosis 1002]
gi|308276520|gb|ADO26419.1| Putative Holliday junction resolvase [Corynebacterium
pseudotuberculosis I19]
Length = 197
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
ID+GT RIG+A SD R A P R +R + LL I + ++GL
Sbjct: 20 GIDVGTVRIGVAASDRDARLAMPVETVPRKTGLRDRDQGDIDRLLEIIREYAVVEVVVGL 79
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
P ++ G+ V + + R + +P DERLTTV A Q L +S K
Sbjct: 80 PRDLKGNGSKSVKHAKDIAFRISRRLQASESSIPVRLADERLTTVVATQALRASGISEKT 139
Query: 132 RIQKVDSIAAALILQEVLD 150
+ +D AA ILQ LD
Sbjct: 140 GRKVIDQAAAVEILQSWLD 158
>gi|327402963|ref|YP_004343801.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823]
gi|327318471|gb|AEA42963.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823]
Length = 142
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +ID G KR GLA+SD + FA + K + EL ++ E I +IG P
Sbjct: 3 KILAIDFGLKRTGLALSDESKIFAFGLQTIDSKTLMD---ELKKLVSKEKITEIVIGEPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
++ S+ + R + +KV+ V DER T+ A ++ + +K R QK
Sbjct: 60 RLDTSDSHITQNVRLLKEAV--QKVFPEVLVCMLDERFTSKMASAVIAQSGLKKKDREQK 117
Query: 136 --VDSIAAALILQEVL 149
+D+++A +ILQ+ L
Sbjct: 118 GLIDTVSATIILQDYL 133
>gi|255319727|ref|ZP_05360935.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262379992|ref|ZP_06073147.1| endonuclease [Acinetobacter radioresistens SH164]
gi|255303256|gb|EET82465.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262298186|gb|EEY86100.1| endonuclease [Acinetobacter radioresistens SH164]
Length = 147
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GT+++G+AI + A+P K LL + F++GLPLN
Sbjct: 10 IMAFDFGTQKMGMAIGQAAIQSANPLTLFPMKDGIPNWEHLLKIVKEWQPDLFLVGLPLN 69
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+ SE R F + + + + DERLTT A+ L R DS
Sbjct: 70 MDESESELSARARKFARR-LRHQTNIETLMVDERLTTREARSELSQYQAQGGNRKLAADS 128
Query: 139 IAAALILQ 146
IAAAL+++
Sbjct: 129 IAAALLIE 136
>gi|226306473|ref|YP_002766433.1| Holliday junction resolvase [Rhodococcus erythropolis PR4]
gi|229493502|ref|ZP_04387287.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|259495711|sp|C0ZZA9|RUVX_RHOE4 RecName: Full=Putative Holliday junction resolvase
gi|226185590|dbj|BAH33694.1| putative Holliday junction resolvase [Rhodococcus erythropolis PR4]
gi|229319463|gb|EEN85299.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length = 177
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL----ELLSFITTENIAAFIIGLP 76
+ID+G+ RIG+A SDP A P + R K +++ ++ I+GLP
Sbjct: 23 AIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRIIAIVSEYEAVEVIVGLP 82
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ G +G AF + +P DERLTTV+A + L + V + + +
Sbjct: 83 QTLRGEQGKAAGIATAFAKRLQRAVEPIPVRLSDERLTTVTAARNLRESGVKARGQRPMI 142
Query: 137 DSIAAALILQEVLDRISFL----ESSK 159
D AA ILQ LD S ESSK
Sbjct: 143 DQAAAVEILQGWLDERSRAVKPGESSK 169
>gi|167586351|ref|ZP_02378739.1| Holliday junction resolvase-like protein [Burkholderia ubonensis
Bu]
Length = 149
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G KRIG+AI + R A P L R+ + +LL+ + A ++GLP+
Sbjct: 13 AFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPD---ALVVGLPM 69
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ + F N ++ + +P + DER ++V A+ L + +V + R +D
Sbjct: 70 HPDGTPHDMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAALRERDVRGRARAGMLD 128
Query: 138 SIAAALILQEVLDRISFLE 156
+ AA +ILQ+ LD++S E
Sbjct: 129 AEAARVILQQYLDQLSDHE 147
>gi|28493342|ref|NP_787503.1| hypothetical protein TWT375 [Tropheryma whipplei str. Twist]
gi|28572547|ref|NP_789327.1| hypothetical protein TW394 [Tropheryma whipplei TW08/27]
gi|62901025|sp|Q83GD2|RUVX_TROWT RecName: Full=Putative Holliday junction resolvase
gi|62901026|sp|Q83HU9|RUVX_TROW8 RecName: Full=Putative Holliday junction resolvase
gi|28410679|emb|CAD67065.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
gi|28476383|gb|AAO44472.1| unknown [Tropheryma whipplei str. Twist]
Length = 145
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+VKS+ ++ +D G+ RIG+A + G A P L R + E+L +I+ +I
Sbjct: 1 MVKSV-ADRFFLGLDFGSTRIGVA-RNCGS-LAVPVGVLPR----ASCAEILGYISRYSI 53
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+IGLPL + G E + F ++ V V F +DER TTV A Q +
Sbjct: 54 DEVVIGLPLTLAGKEKQSARLAKEFSRFLVSSGVQVRF--FDERFTTVIATQKFYSLGKG 111
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
K+ + VD+ AA ++LQ LD
Sbjct: 112 VKQIRKCVDAAAATVMLQLFLD 133
>gi|292487084|ref|YP_003529954.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430]
gi|291552501|emb|CBA19546.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430]
gi|312171187|emb|CBX79446.1| putative Holliday junction resolvase [Erwinia amylovora ATCC
BAA-2158]
Length = 141
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
NQ + D GTK IG+AI A P L + L + + ++GL
Sbjct: 4 NQTCLAFDFGTKSIGVAIGQQLTGTARPLIALKAQDGIPDWNRLEALLKEWQPDRVVVGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F N + + V DERL+TV A+ L + R
Sbjct: 64 PLNMDGSEQPLTVRARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122
Query: 136 VDSIAAALILQEVLD 150
VDS++A +IL+ +
Sbjct: 123 VDSLSAVIILESWFE 137
>gi|93004892|ref|YP_579329.1| Holliday junction resolvase YqgF [Psychrobacter cryohalolentis K5]
gi|146325594|sp|Q1QEQ8|RUVX_PSYCK RecName: Full=Putative Holliday junction resolvase
gi|92392570|gb|ABE73845.1| Holliday junction resolvase YqgF [Psychrobacter cryohalolentis K5]
Length = 173
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+KP+ I ++D G K++G+A+ + A L LL I +A +
Sbjct: 20 IKPHL-ILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKVV 78
Query: 73 IGLPLNMNGSE---GPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+GLPLNM+GS R H R H ++++ + V DERLT+V+A++I +
Sbjct: 79 VGLPLNMDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGWI 138
Query: 129 RKKRIQKVDSIAAALILQ 146
+ +R +D I+A +++
Sbjct: 139 KHER-APIDDISACILMS 155
>gi|292900531|ref|YP_003539900.1| holliday junction resolvase [Erwinia amylovora ATCC 49946]
gi|291200379|emb|CBJ47507.1| putative holliday junction resolvase [Erwinia amylovora ATCC 49946]
Length = 140
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
NQ + D GTK IG+AI A P L + L + + ++GL
Sbjct: 3 NQTCLAFDFGTKSIGVAIGQQLTGTARPLIALKAQDGIPDWNRLEALLKEWQPDRVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F N + + V DERL+TV A+ L + R
Sbjct: 63 PLNMDGSEQPLTVRARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121
Query: 136 VDSIAAALILQEVLD 150
VDS++A +IL+ +
Sbjct: 122 VDSLSAVIILESWFE 136
>gi|220912768|ref|YP_002488077.1| Holliday junction resolvase YqgF [Arthrobacter chlorophenolicus A6]
gi|219859646|gb|ACL39988.1| Holliday junction resolvase YqgF [Arthrobacter chlorophenolicus A6]
Length = 207
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 13/139 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+D+GT R+G+AI D A P L R + + L++ + E I+G+P M
Sbjct: 26 GVDVGTVRVGVAICDRDSILATPYKTLDRNTKKNSDVRLIAKLAEELGAVQVIVGMPRTM 85
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY--------VPFVFWDERLTTVSAQQILIDMNVSRKK 131
G E H++ + VP DERL++VSA + L + +S +
Sbjct: 86 KGEE----HASARMASDYAGLLAAELAARGLDVPVNMVDERLSSVSAHRNLHEAGMSSRN 141
Query: 132 RIQKVDSIAAALILQEVLD 150
+ VD +AAA ILQ +D
Sbjct: 142 HRKVVDQVAAAGILQHAID 160
>gi|150025799|ref|YP_001296625.1| Holliday junction resolvase-like protein [Flavobacterium
psychrophilum JIP02/86]
gi|167012723|sp|A6H0E5|RUVX_FLAPJ RecName: Full=Putative Holliday junction resolvase
gi|149772340|emb|CAL43818.1| Putative Holliday junction resolvase [Flavobacterium psychrophilum
JIP02/86]
Length = 137
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
I +ID G KR G+AI+D + A + ++T++ L + T E + +IG P
Sbjct: 4 ILAIDYGQKRTGIAITDEMQIIASGLTTIA----SETSIAFLRDYFTKEKVEKVLIGEPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
MNG FV + + DER T+ A Q +ID + +K+R K
Sbjct: 60 QMNGEPSQSTDIIEKFVTKFKNNFPDMAIERVDERFTSKMAFQTMIDSGLKKKQRQNKAL 119
Query: 136 VDSIAAALILQEVLDR 151
VD I+A ++LQ+ L R
Sbjct: 120 VDEISATIMLQDYLTR 135
>gi|325144525|gb|EGC66824.1| hypothetical protein NMBM01240013_0937 [Neisseria meningitidis
M01-240013]
gi|325205893|gb|ADZ01346.1| conserved hypothetical protein [Neisseria meningitidis M04-240196]
gi|325208296|gb|ADZ03748.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
Length = 151
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
LP++ +G++ H + F + R +P V+W DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTKHEMTHLSHKFGRRLNGR-FNLP-VYWVDERLSSVYAESLLSEAQVFGKKRK 122
Query: 134 QKVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 123 SVLDQVAAQAILHGFFE 139
>gi|313678596|ref|YP_004056336.1| hypothetical protein MBOVPG45_0505 [Mycoplasma bovis PG45]
gi|312950363|gb|ADR24958.1| conserved hypothetical protein TIGR00250 [Mycoplasma bovis PG45]
Length = 146
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 21 SIDLGTKRIGLAISD---------PGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
S DLGTK G AISD RF +V KV E++ + +I AF
Sbjct: 5 SFDLGTKTCGFAISDILEISANALETIRFDENDFNVVITKVK----EIIK-MYQNSIDAF 59
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++G PL NGS+ R F + + + DE +T+ AQ+IL D +S KK
Sbjct: 60 VLGYPLRSNGSKSERTVMVDNFATLLANEFPGINIYLVDEYGSTIKAQRILKDAKLSNKK 119
Query: 132 RIQKVDSIAAALILQEVL 149
K D+++A +IL + L
Sbjct: 120 TKSKKDTVSAVIILNDFL 137
>gi|262202251|ref|YP_003273459.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247]
gi|262085598|gb|ACY21566.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247]
Length = 143
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+D+G+ RIG+A+ DP A P + R +E ++ + E + A I+GLP +
Sbjct: 10 GVDVGSVRIGVAVCDPDGILATPVETVARTPHNDDDIERIATLVDEYDAAEVIVGLPKTL 69
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G + R F + R V + DERLTTV+A Q + + K +D
Sbjct: 70 RNEAGAAAEAARDFGDRLAARIAPVGVSYHDERLTTVTAHQAMRASGRNAKSSRAVIDQA 129
Query: 140 AAALILQEVLD 150
AA ILQ LD
Sbjct: 130 AAVAILQGWLD 140
>gi|300718245|ref|YP_003743048.1| Holliday junction resolvase [Erwinia billingiae Eb661]
gi|299064081|emb|CAX61201.1| Putative Holliday junction resolvase [Erwinia billingiae Eb661]
Length = 140
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+AI A P L + T ++ + + ++GLPLNM+
Sbjct: 8 AFDFGTKSIGVAIGQQLTGTARPLAALKAQDGTPDWNKIEALLKEWEPDRVVVGLPLNMD 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+TV A+ L + R VDS++
Sbjct: 68 GTEQPLTARARKFA-NRIHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGSVDSLS 126
Query: 141 AALILQEVLD 150
A +IL+ +
Sbjct: 127 AVIILESWFE 136
>gi|317493541|ref|ZP_07951962.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918484|gb|EFV39822.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 140
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 64/151 (42%), Gaps = 31/151 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ I + D GTK IG AI ++VT TA L SF E +
Sbjct: 3 NRTIIAFDFGTKSIGAAIG---------------QEVTGTARPLASFKANEGSPDWSKIE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E P R F N I + V DERL+TV A+
Sbjct: 48 KMLKEWQPDLVVVGLPLNMDGTEQPVTAQARKFA-NRIHGRFGVQVALHDERLSTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
L R VD+ +A +IL+ ++
Sbjct: 107 HLFAGGGYRALDKGSVDAASAVIILESWFEQ 137
>gi|269137634|ref|YP_003294334.1| hypothetical protein ETAE_0276 [Edwardsiella tarda EIB202]
gi|267983294|gb|ACY83123.1| conserved hypothetical protein [Edwardsiella tarda EIB202]
gi|304557699|gb|ADM40363.1| Putative Holliday junction resolvase [Edwardsiella tarda FL6-60]
Length = 140
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 31/151 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
I + D GT+ IG AI +++T +A L SF + +
Sbjct: 6 ILAFDFGTRSIGCAIG---------------QELTGSARPLQSFKANDGAPDWQQIEKVL 50
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLPLNM+GSE P R F N + + V DERL+TV A+ L
Sbjct: 51 REWQPDLVVVGLPLNMDGSEQPLTQMARKFA-NRLHGRFGVQIALQDERLSTVEARAHLF 109
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
R +VD+ +AALIL+ + ++
Sbjct: 110 AGGGYRALEKGRVDAASAALILESWFEHQTY 140
>gi|146300283|ref|YP_001194874.1| Holliday junction resolvase-like protein [Flavobacterium johnsoniae
UW101]
gi|189046096|sp|A5FGX1|RUVX_FLAJO RecName: Full=Putative Holliday junction resolvase
gi|146154701|gb|ABQ05555.1| Holliday junction resolvase YqgF [Flavobacterium johnsoniae UW101]
Length = 138
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 7/139 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
I SID G KR G+A++D + A + T T ++ L + E + A +IG P
Sbjct: 4 ILSIDYGQKRTGIAVTDEMQIIASGLTTIP----THTLIDFLKDYFAKEKVEAVLIGEPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
MNG FV + + + + DER T+ A Q ++D +S+K+R K
Sbjct: 60 QMNGQPSESASVINGFVTHFSNIFPDMKVIRVDERFTSKMAFQTMLDSGLSKKQRQNKGL 119
Query: 136 VDSIAAALILQEVLDRISF 154
+D I+A ++LQ+ L F
Sbjct: 120 IDEISATIMLQDYLSSKRF 138
>gi|220907921|ref|YP_002483232.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 7425]
gi|219864532|gb|ACL44871.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7425]
Length = 150
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLG KRIG+A D A L R+ + +L + + ++GLP M+
Sbjct: 6 GLDLGEKRIGIAGCDRTGLIATGLTTLERRSFAEDMQQLDQIVQERQVEVLVVGLPYRMD 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS G + + I + + +P + DERLT+ A+ +L + +D A
Sbjct: 66 GSIGFQARRVQRLAQR-IAQALNLPVEYVDERLTSFEAEAMLRSQGRFSNRDKPLIDRKA 124
Query: 141 AALILQEVLDR 151
AALILQ+ L++
Sbjct: 125 AALILQQWLEQ 135
>gi|182415341|ref|YP_001820407.1| Holliday junction resolvase YqgF [Opitutus terrae PB90-1]
gi|226731633|sp|B1ZVE0|RUVX_OPITP RecName: Full=Putative Holliday junction resolvase
gi|177842555|gb|ACB76807.1| Holliday junction resolvase YqgF [Opitutus terrae PB90-1]
Length = 145
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GT+RIGLA D A P P LV + LL+ + ++G PLNM+
Sbjct: 5 GIDYGTRRIGLAYGDE-LGVATPLPALVEADPAKRWQSLLATARQRRVTDLVVGHPLNMD 63
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
+ GP+ A + V DERLT+ A+ + + +DS A
Sbjct: 64 DTAGPKAKEAEAVAARLRTELAGVDVHLVDERLTSYEAEATISKTQRRAVRASGVIDSRA 123
Query: 141 AALILQEVLDR 151
A LILQ+ LD+
Sbjct: 124 ATLILQDFLDQ 134
>gi|332288759|ref|YP_004419611.1| Holliday junction resolvase-like protein [Gallibacterium anatis
UMN179]
gi|330431655|gb|AEC16714.1| Holliday junction resolvase-like protein [Gallibacterium anatis
UMN179]
Length = 139
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 31/150 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N + + D GT+ IG A+ + +TQTA L +F + I +
Sbjct: 3 NLTVIAFDFGTQSIGCAVG---------------QSITQTAQALPAFKAQDGIPNWDAIK 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E R F N ++ + V DERLTT A+
Sbjct: 48 KCLDEWKPDLVVVGLPLNMDGTEQEITQRARKFA-NRLNGRFGVKIALQDERLTTTEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ R K+DSI+A LIL+ +
Sbjct: 107 EIFSRGGYRALNKGKIDSISACLILESWFE 136
>gi|269126370|ref|YP_003299740.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM
43183]
gi|268311328|gb|ACY97702.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM
43183]
Length = 152
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
ID+G+ RIG+A SDP A P + R K L+ ++ + E+ A I+GLP ++
Sbjct: 4 GIDVGSVRIGVARSDPAGILATPLETVRRGK---GDLDRIAELVAEHEAVEVIVGLPTSL 60
Query: 80 NGSEGPRVHSTRAFVHNMIDR-KVYVP---FVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+G GP R F + R +P +DERLTTV+A+ L V K R Q
Sbjct: 61 SGRSGPAAAQARRFAEALAGRLSQLLPDGGVRLYDERLTTVTAEAELRRSGVRGKARRQV 120
Query: 136 VD 137
VD
Sbjct: 121 VD 122
>gi|157148498|ref|YP_001455817.1| Holliday junction resolvase-like protein [Citrobacter koseri ATCC
BAA-895]
gi|167012710|sp|A8APG8|RUVX_CITK8 RecName: Full=Putative Holliday junction resolvase
gi|157085703|gb|ABV15381.1| hypothetical protein CKO_04324 [Citrobacter koseri ATCC BAA-895]
Length = 138
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+AI A P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAIGQRITGTARALPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + V DERL+T+ A+ L + R KVDS +
Sbjct: 67 GTEQPLTARARKFA-NRIHGRFGVLVTLHDERLSTIEARSGLFEQGGYRALNKGKVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESYFEQ 136
>gi|307609381|emb|CBW98869.1| hypothetical protein LPW_06571 [Legionella pneumophila 130b]
Length = 142
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D G KRIG+A+ A P + K + IT N A I+GLP ++
Sbjct: 11 GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNSIQKVITQWNPQALIVGLPTCID 70
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
E + R F + ++ +P DERL+TV A+ L + R+ + +VDSIA
Sbjct: 71 DRELYTTSAARRFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 129
Query: 141 AALILQEVLDR 151
A +IL++ L +
Sbjct: 130 ACVILEQWLQQ 140
>gi|222529202|ref|YP_002573084.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM
6725]
gi|254767493|sp|B9MRK7|RUVX_ANATD RecName: Full=Putative Holliday junction resolvase
gi|222456049|gb|ACM60311.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM
6725]
Length = 138
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G R+G+AISDP + A P + + EL NI +IG PL+
Sbjct: 3 ILCLDIGNSRVGVAISDPLKITAQP-VMTIELRNKDLFEELDKIFQGYNIEKVVIGYPLS 61
Query: 79 -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136
++ + + I + V V WDER +T + ++++ ++N RKK+I +
Sbjct: 62 KLHPDQKDEKLKKIDEISEKIGSRYNVEIVKWDERFSTKAVERVIDEELNWKRKKKI--I 119
Query: 137 DSIAAALILQEVLD 150
D +AA ILQ LD
Sbjct: 120 DKVAAVYILQGYLD 133
>gi|212696192|ref|ZP_03304320.1| hypothetical protein ANHYDRO_00728 [Anaerococcus hydrogenalis DSM
7454]
gi|212676821|gb|EEB36428.1| hypothetical protein ANHYDRO_00728 [Anaerococcus hydrogenalis DSM
7454]
Length = 76
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GP+ +FV +++ ++ + + DER+TT+ + ++L+DM+V R+ R + +D
Sbjct: 1 MNNTLGPQAMKVISFV-DLLKKETDIDIKYQDERMTTIQSDKVLMDMSVKRENRKKYIDK 59
Query: 139 IAAALILQEVLD 150
IAA+ ILQ LD
Sbjct: 60 IAASFILQTYLD 71
>gi|15617141|ref|NP_240354.1| hypothetical protein BU548 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681893|ref|YP_002468279.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|219682448|ref|YP_002468832.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|11387309|sp|P57613|RUVX_BUCAI RecName: Full=Putative Holliday junction resolvase
gi|254767500|sp|B8D9X0|RUVX_BUCA5 RecName: Full=Putative Holliday junction resolvase
gi|254767501|sp|B8D872|RUVX_BUCAT RecName: Full=Putative Holliday junction resolvase
gi|25306219|pir||H84993 hypothetical protein [imported] - Buchnera sp. (strain APS)
gi|10039206|dbj|BAB13240.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219622181|gb|ACL30337.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|219624736|gb|ACL30891.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|311087433|gb|ADP67513.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
Length = 135
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G K+IG+A+ + + P L + + + I ++GLPLN
Sbjct: 3 VIAFDFGIKKIGVAVGENITKKGRPLSVLNAQNGCPNWQLVKNLIQYWQPQFIVVGLPLN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+NG++ + + F N++ K + DERLTTV A+ I+ N + + +K+ S
Sbjct: 63 INGTKQKITNKSEKFA-NLLKYKFNIVVKMHDERLTTVEAKSIIFKKNGFKGLKEEKIHS 121
Query: 139 IAAALILQEVLDR 151
AA +IL+ ++
Sbjct: 122 CAAVIILESWFNQ 134
>gi|332290888|ref|YP_004429497.1| Holliday junction resolvase YqgF [Krokinobacter diaphorus 4H-3-7-5]
gi|332168974|gb|AEE18229.1| Holliday junction resolvase YqgF [Krokinobacter diaphorus 4H-3-7-5]
Length = 136
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID GTKR G+A++D + A + K + L +++ E + A +IG P
Sbjct: 4 IIAIDYGTKRTGIAVTDELQMIASGLTTVETKDIFTF---LKKYLSEEKVEAMVIGEPKR 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN F ++ + + + DER T+ A Q ++D + +KKR K V
Sbjct: 61 MNNEASDVEVDIVRFRESVEKKHPELTIIRQDERFTSKMAFQTMLDSGIGKKKRQNKALV 120
Query: 137 DSIAAALILQEVL 149
D I+A +ILQ+ L
Sbjct: 121 DQISATIILQDYL 133
>gi|257471598|ref|ZP_05635597.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
LSR1 (Acyrthosiphon pisum)]
gi|311086269|gb|ADP66351.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
LL01 (Acyrthosiphon pisum)]
gi|311086844|gb|ADP66925.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|311087924|gb|ADP68003.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
Length = 146
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G K+IG+A+ + + P L + + + I ++GLPLN
Sbjct: 14 VIAFDFGIKKIGVAVGENITKKGRPLSVLNAQNGCPNWQLVKNLIQYWQPQFIVVGLPLN 73
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+NG++ + + F N++ K + DERLTTV A+ I+ N + + +K+ S
Sbjct: 74 INGTKQKITNKSEKFA-NLLKYKFNIVVKMHDERLTTVEAKSIIFKKNGFKGLKEEKIHS 132
Query: 139 IAAALILQEVLDR 151
AA +IL+ ++
Sbjct: 133 CAAVIILESWFNQ 145
>gi|298373387|ref|ZP_06983376.1| Holliday junction resolvase [Bacteroidetes oral taxon 274 str.
F0058]
gi|298274439|gb|EFI15991.1| Holliday junction resolvase [Bacteroidetes oral taxon 274 str.
F0058]
Length = 138
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID GTKR+G+A++DP A + ++ L ++T + +IG PL
Sbjct: 4 ILAIDYGTKRVGVAVTDPLGMIAGALATVETPRIFDF---LNEYLTVNDCNRLVIGYPLT 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
+ F+ Y+ + +DER T+ A ++ + R+KR K +
Sbjct: 61 LRNEPAEVTREIDRFIERFALLYPYIEVIKYDERFTSKLAFDTILASGIGRRKRRDKAVI 120
Query: 137 DSIAAALILQEVLDRIS 153
D I+A +ILQ L+ IS
Sbjct: 121 DRISATIILQNYLESIS 137
>gi|193216584|ref|YP_001999826.1| putative Holliday junction resolvase [Mycoplasma arthritidis
158L3-1]
gi|226731628|sp|B3PM70|RUVX_MYCA5 RecName: Full=Putative Holliday junction resolvase
gi|193001907|gb|ACF07122.1| putative Holliday junction resolvase [Mycoplasma arthritidis
158L3-1]
Length = 147
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFA-HPRPFLVRKKVTQTALELLSFITTEN-----IAAFIIG 74
+DLG K G AISD + A F + + + + E+ + I+G
Sbjct: 5 CLDLGKKTCGFAISDVNQTIAIGLENFFYEEYHFYEVINRIKYYLEESEFQGQVDEIILG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPL M+ SE + F ++ + + +P DER +T +A+ IL + K++
Sbjct: 65 LPLRMDLSESKTTKMVKKFA-TVLAKNITLPIRLQDERQSTKNAEAILSQGGYNAKQKKL 123
Query: 135 KVDSIAAALILQEVLDR 151
K DS+AA LIL++ L+R
Sbjct: 124 KKDSLAAQLILEDYLER 140
>gi|54296606|ref|YP_122975.1| Holliday junction resolvase-like protein [Legionella pneumophila
str. Paris]
gi|62900944|sp|Q5X7G8|RUVX_LEGPA RecName: Full=Putative Holliday junction resolvase
gi|53750391|emb|CAH11785.1| hypothetical protein lpp0637 [Legionella pneumophila str. Paris]
Length = 139
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D G KRIG+A+ A P + K + IT N A I+GLP ++
Sbjct: 8 GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCID 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
E + R F + ++ +P DERL+TV A+ L + R+ + +VDSIA
Sbjct: 68 DRELYTTSAARHFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 126
Query: 141 AALILQEVLDR 151
A +IL++ L +
Sbjct: 127 ACVILEQWLQQ 137
>gi|237808011|ref|YP_002892451.1| Holliday junction resolvase-like protein [Tolumonas auensis DSM
9187]
gi|237500272|gb|ACQ92865.1| Holliday junction resolvase YqgF [Tolumonas auensis DSM 9187]
Length = 146
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + D GTK IG+A A P L + ++ + I+GL
Sbjct: 6 NRSLMGFDFGTKSIGIATGQEITGSASPLTSLKANEGIPDWAQIEKLLKEWQPDLLIVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + R + F DERLTT A+ L + R +
Sbjct: 66 PLNMDGTEQEMTQRARKFGQRLHGRFGF-QVEFKDERLTTTDAKARLFEHGGYRALGKSR 124
Query: 136 VDSIAAALILQEVLDRISFLESSKG 160
VD+++A LIL+ S++ES G
Sbjct: 125 VDAVSAQLILE------SWMESHYG 143
>gi|310766485|gb|ADP11435.1| putative Holliday junction resolvase [Erwinia sp. Ejp617]
Length = 141
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + + D GTK IG+AI A P L + + + + ++GL
Sbjct: 4 HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F N + + V DERL+TV A+ L + R
Sbjct: 64 PLNMDGSEQPLTARARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122
Query: 136 VDSIAAALILQEVLD 150
VDS++A +IL+ +
Sbjct: 123 VDSLSAVIILESWFE 137
>gi|308233743|ref|ZP_07664480.1| Holliday junction resolvase YqgF [Atopobium vaginae DSM 15829]
gi|328943733|ref|ZP_08241198.1| Holliday junction resolvase [Atopobium vaginae DSM 15829]
gi|327491702|gb|EGF23476.1| Holliday junction resolvase [Atopobium vaginae DSM 15829]
Length = 141
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G R+G+A+SD A P L ++V A + + GLP
Sbjct: 3 VLALDIGEVRVGIAVSDASETLAMPVKVLPFQEVYTHARTFRRVLEDYEPDLLVCGLPRT 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ G G + I R + F DERL++ A++IL + S K+ +D
Sbjct: 63 LAGDVGAQAQKLMEQAQT-IARACNLDVTFVDERLSSAQAKRILREQGYSEKQMRGHIDM 121
Query: 139 IAAALILQEVLD 150
IAA+L LQ LD
Sbjct: 122 IAASLFLQAWLD 133
>gi|27904966|ref|NP_778092.1| hypothetical protein bbp492 [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|32130020|sp|Q89A50|RUVX_BUCBP RecName: Full=Putative Holliday junction resolvase
gi|27904364|gb|AAO27197.1| hypothetical 16.0 kDa protein [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 137
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D GTK IG+A+ A P + K +L I A ++G PLN
Sbjct: 3 IIALDFGTKNIGVAVGQNYTNTARSLPSIKVKNKKLNIEKLNKLIDEWKPNAIVVGHPLN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
++G++ + F + + ++ +P + DERL+TV A+ IL + + + +++D
Sbjct: 63 IDGTKQKITQCSENFSKKL--KNIFKIPILLHDERLSTVEAKAILFEKYGYKSLKKERID 120
Query: 138 SIAAALILQ 146
S++A +IL+
Sbjct: 121 SMSAVIILE 129
>gi|295675689|ref|YP_003604213.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1002]
gi|295435532|gb|ADG14702.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1002]
Length = 146
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+ D G KRIG+A+ + R A P +V+ + + E L + E A ++GLP++
Sbjct: 13 AFDYGVKRIGVAVGNSLTRRARPL-VVVQNRSKEYRFEALGKLIAEWKPDALVVGLPMHP 71
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+ R + F N ++ + +P + DER ++V A+ + N R +D+
Sbjct: 72 DGTPHERTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAEAEIRAGNA----RADMLDAE 126
Query: 140 AAALILQEVLDRIS 153
AA++ILQ+ LD +S
Sbjct: 127 AASIILQQYLDELS 140
>gi|134098623|ref|YP_001104284.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
2338]
gi|133911246|emb|CAM01359.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
2338]
Length = 124
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G+P + G GP + ++ + +R VP V+ DERLTTV+A ++L V KK+
Sbjct: 37 GMPRTLAGRHGPAAEAAESYGTALAERIAPVPVVYSDERLTTVTASRMLSKRGVRGKKQR 96
Query: 134 QKVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 97 AVVDQAAAVEILQAWLD 113
>gi|78065437|ref|YP_368206.1| Holliday junction resolvase-like protein [Burkholderia sp. 383]
gi|146325557|sp|Q39J04|RUVX_BURS3 RecName: Full=Putative Holliday junction resolvase
gi|77966182|gb|ABB07562.1| Holliday junction resolvase YqgF [Burkholderia sp. 383]
Length = 149
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV-----RKKVTQTALELLSFITTENIAAFIIGL 75
+ D G KRIG+A+ + R A R +V R+ + +LL+ + A ++GL
Sbjct: 13 AFDYGEKRIGVAVGNALTRSA--RALVVIQNLNREHRFKAVGDLLAEWRPD---ALVVGL 67
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P++ +G+ + F N ++ + +P + DER ++V A+ L + NV + R +
Sbjct: 68 PMHPDGTPHDMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEM 126
Query: 136 VDSIAAALILQEVLDRISFLE 156
+D+ AA +ILQ+ LD++S E
Sbjct: 127 LDAEAARVILQQYLDQLSDHE 147
>gi|52840824|ref|YP_094623.1| Holliday junction resolvase-like protein [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|296106167|ref|YP_003617867.1| putative ribonuclease [Legionella pneumophila 2300/99 Alcoy]
gi|52627935|gb|AAU26676.1| YqgF [Legionella pneumophila subsp. pneumophila str. Philadelphia
1]
gi|295648068|gb|ADG23915.1| putative ribonuclease [Legionella pneumophila 2300/99 Alcoy]
Length = 142
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P D G KRIG+A+ A P + K + IT N A I+G
Sbjct: 5 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ E + R F + ++ +P DERL+TV A+ L + R+ +
Sbjct: 65 LPTCIDDRELYTTSAARRFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123
Query: 135 KVDSIAAALILQEVLDR 151
+VDSIAA +IL++ L +
Sbjct: 124 EVDSIAACVILEQWLQQ 140
>gi|224129716|ref|XP_002328785.1| predicted protein [Populus trichocarpa]
gi|222839083|gb|EEE77434.1| predicted protein [Populus trichocarpa]
Length = 254
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R G+A+S + F RP V + + + L LL E + FIIGLP +
Sbjct: 93 GVDLGLSRSGVALS---KGFTV-RPLTVLELRGQKLELRLLEIAENEEVDEFIIGLPKSW 148
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-----DERLTTVSAQQILIDMNVSRKKRIQ 134
+G E P+ + R+ V W DE T+ A +IDM +++ R +
Sbjct: 149 DGKETPQSNKVRSVAGRFA---VLAAHRGWRVYLQDEHGTSTEATNRMIDMGLNKSTRQK 205
Query: 135 KVDSIAAALILQ 146
KVD+ AA ++L+
Sbjct: 206 KVDAYAAVMVLE 217
>gi|91070313|gb|ABE11231.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone HF10-88D1]
Length = 153
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+K KP + I S+D+GTKRIGLA DP ++ P + R + Q + ++I N+
Sbjct: 1 MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINELNL 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127
FI+G+PL+ G + + + ++ R++ +PF + +E +T S+ + I
Sbjct: 61 TGFIVGIPLDEEGQMTTQAIDCKKY-GQLLSRELMLPFSYVNEHSSTWESSYRFGI---- 115
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+K + +DS +A +IL++ + LE G
Sbjct: 116 -KKDKSGLIDSFSAKIILEQWIAEGPELEEIAG 147
>gi|323359965|ref|YP_004226361.1| endonuclease [Microbacterium testaceum StLB037]
gi|323276336|dbj|BAJ76481.1| predicted endonuclease [Microbacterium testaceum StLB037]
Length = 157
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENIAAFIIGL 75
ID+G R+G+A SDP A P + RK ++ A E +F ++GL
Sbjct: 11 GIDVGRARVGVARSDPDGVLAVPVETVPRKGEPVRRIVALAAEYEAF-------EVLVGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLN+ G + RAF + + P DERL+TVSA +L S++
Sbjct: 64 PLNLRGEDTASTADARAFAQELAA-ALAAPVRLVDERLSTVSAHGVLRQAGRSQRDSRSI 122
Query: 136 VDSIAAALILQEVLD 150
VD +AA ++LQ+ LD
Sbjct: 123 VDQVAAVVLLQQALD 137
>gi|269121338|ref|YP_003309515.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
gi|268615216|gb|ACZ09584.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
Length = 137
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G RIG+A SD A P + R T + + EN ++G+P +++
Sbjct: 6 GLDVGDVRIGVAKSDILGILATPLEVINRND-TDPVKRIKELLQQENTNGLVVGIPKSLD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK---KRIQKVD 137
G+ +V F+ + + + DER TTV A+ L N S+K +R + VD
Sbjct: 65 GTVKRQVEKVNEFIEELKKNIDNLEIITVDERYTTVEAEHYL--RNYSKKNPRERRKVVD 122
Query: 138 SIAAALILQEVLD 150
+AA++ILQ+ LD
Sbjct: 123 MVAASIILQKFLD 135
>gi|255994297|ref|ZP_05427432.1| putative Holliday junction resolvase [Eubacterium saphenum ATCC
49989]
gi|255993010|gb|EEU03099.1| putative Holliday junction resolvase [Eubacterium saphenum ATCC
49989]
Length = 148
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G IG+A SD A + R+ + + +++ + ++ + +IG+PLN
Sbjct: 3 VLALDVGEATIGVARSDALGITAQGLLSIFRESIKKDTTKIIDILREDDYSEIVIGMPLN 62
Query: 79 MNGSEGPRVHS--TRAFVHNMIDR-----KVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
G E S T F + ++ + F+DER TT A+ +LI + KK
Sbjct: 63 TYG-EAKNEQSIFTEKFADKLQNKLRSSGMSNIKVEFYDERFTTKMARDVLIQGGIKGKK 121
Query: 132 RIQKVDSIAAALILQEVLDRISF 154
+ +D AA ++LQ LD+ S+
Sbjct: 122 QKDVIDKQAAVILLQSYLDKKSY 144
>gi|114330469|ref|YP_746691.1| Holliday junction resolvase-like protein [Nitrosomonas eutropha
C91]
gi|122314517|sp|Q0AIU5|RUVX_NITEC RecName: Full=Putative Holliday junction resolvase
gi|114307483|gb|ABI58726.1| Holliday junction resolvase YqgF [Nitrosomonas eutropha C91]
Length = 157
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPL 77
+ + D G +RIG+AI + R AHP + + +T+ E + I T ++GL +
Sbjct: 21 VLAFDFGVRRIGVAIGEYELRLAHPL-MTIDQAMTKPRFEKIAELIETWQPVLLVVGLSV 79
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+E + F + + + +P V DER TT A+ L ++ ++ +K+ +D
Sbjct: 80 HADGAEHEITRLCQRFARRL-EGRFGIPVVMEDERYTTAIARLTLEEVGITGRKQRPMLD 138
Query: 138 SIAAALILQEVLD 150
IAA ILQ D
Sbjct: 139 QIAAQHILQTFFD 151
>gi|62900951|sp|Q5ZXZ3|RUVX_LEGPH RecName: Full=Putative Holliday junction resolvase
Length = 139
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D G KRIG+A+ A P + K + IT N A I+GLP ++
Sbjct: 8 GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCID 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
E + R F + ++ +P DERL+TV A+ L + R+ + +VDSIA
Sbjct: 68 DRELYTTSAARRFAKQL-HKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 126
Query: 141 AALILQEVLDR 151
A +IL++ L +
Sbjct: 127 ACVILEQWLQQ 137
>gi|107021941|ref|YP_620268.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
AU 1054]
gi|116688888|ref|YP_834511.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
HI2424]
gi|170732189|ref|YP_001764136.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
MC0-3]
gi|206561485|ref|YP_002232250.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
J2315]
gi|254246158|ref|ZP_04939479.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
gi|124107439|sp|Q1BYL0|RUVX_BURCA RecName: Full=Putative Holliday junction resolvase
gi|167012700|sp|A0K541|RUVX_BURCH RecName: Full=Putative Holliday junction resolvase
gi|226725494|sp|B1JWP0|RUVX_BURCC RecName: Full=Putative Holliday junction resolvase
gi|226725495|sp|B4ECT2|RUVX_BURCJ RecName: Full=Putative Holliday junction resolvase
gi|105892130|gb|ABF75295.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia AU 1054]
gi|116646977|gb|ABK07618.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia HI2424]
gi|124870934|gb|EAY62650.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
gi|169815431|gb|ACA90014.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia MC0-3]
gi|198037527|emb|CAR53464.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
Length = 149
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV-----RKKVTQTALELLSFITTENIAAFIIGL 75
+ D G KRIG+AI + R A R +V R+ + +LL+ + A ++GL
Sbjct: 13 AFDYGEKRIGVAIGNALTRSA--RALVVIQNLNREHRFKAVGDLLAEWRPD---ALVVGL 67
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P++ +G+ + F N ++ + +P + DER ++V A+ L + NV + R
Sbjct: 68 PMHPDGTPHDMTQQAKRFG-NQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARTDM 126
Query: 136 VDSIAAALILQEVLDRISFLE 156
+D+ AA +ILQ+ LD++S E
Sbjct: 127 LDAEAARVILQQYLDQLSDHE 147
>gi|139436943|ref|ZP_01771103.1| Hypothetical protein COLAER_00076 [Collinsella aerofaciens ATCC
25986]
gi|133776590|gb|EBA40410.1| Hypothetical protein COLAER_00076 [Collinsella aerofaciens ATCC
25986]
Length = 119
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
+ G PL M G GP+ A + D ++ +P F DERL++ A++IL + ++ K
Sbjct: 32 LVSGRPLTMAGEPGPQAERVAAVAQKIAD-ELDLPLEFEDERLSSQEAKRILREQGLNEK 90
Query: 131 KRIQKVDSIAAALILQEVLDR 151
+ K+D IAA+L LQ LDR
Sbjct: 91 QMRGKIDMIAASLFLQTWLDR 111
>gi|91794024|ref|YP_563675.1| Holliday junction resolvase-like protein [Shewanella denitrificans
OS217]
gi|123060738|sp|Q12KS4|RUVX_SHEDO RecName: Full=Putative Holliday junction resolvase
gi|91716026|gb|ABE55952.1| Holliday junction resolvase YqgF [Shewanella denitrificans OS217]
Length = 141
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
NQ + D GTK IG+A+ A P L + E+ I ++GL
Sbjct: 4 NQTVLGFDYGTKSIGVAVGQSITASASPLLALKAQDGIPNWDEIEKLIKEWQPDLVVVGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E + F N I + V + DERLTT A+ L ++ + +
Sbjct: 64 PLNMDGTEQDITQRAKKFA-NRISGRFGVKVLTQDERLTTADAKARLFELGGYKALTKGQ 122
Query: 136 VDSIAAALILQEVLD 150
VD+++A LI++ +
Sbjct: 123 VDAVSAVLIIESYFE 137
>gi|307543649|ref|YP_003896128.1| Holliday junction resolvase YqgF [Halomonas elongata DSM 2581]
gi|307215673|emb|CBV40943.1| Holliday junction resolvase YqgF [Halomonas elongata DSM 2581]
Length = 143
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D GT+RIG+A+ + R A L + + + F++GLPLN
Sbjct: 7 ILGFDFGTRRIGVAVGNELTRSARALDPLPARDGIPDWTRVARLVDEWRPDLFVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E R F + R +P DER +T A+ I D R VD
Sbjct: 67 MDGTESDMSTRARKFGKRLFGR-YGIPCEMADERGSTREAKAIARDAGHRGNYRDDGVDG 125
Query: 139 IAAALILQEVL 149
+AA LIL+ L
Sbjct: 126 LAAVLILEGWL 136
>gi|332710808|ref|ZP_08430745.1| conserved hypothetical protein TIGR00250 [Lyngbya majuscula 3L]
gi|332350361|gb|EGJ29964.1| conserved hypothetical protein TIGR00250 [Lyngbya majuscula 3L]
Length = 151
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLG+KRIG+A D A + R + +L + T + ++GLP +M+
Sbjct: 8 GLDLGSKRIGVAGCDGTGLIATGLTTIDRTSFQRDVDQLRELVETREVQLLVVGLPYSMD 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ G + + + + +P + DERLT+ A+ L S + +D A
Sbjct: 68 GTLGFQARKVQKLATRLAA-ALQLPVEYIDERLTSWEAESRLKASKRSLTQNKGLIDRHA 126
Query: 141 AALILQEVLDR 151
AA+ILQ+ LDR
Sbjct: 127 AAIILQQWLDR 137
>gi|119899749|ref|YP_934962.1| Holliday junction resolvase-like protein [Azoarcus sp. BH72]
gi|167012690|sp|A1KB70|RUVX_AZOSB RecName: Full=Putative Holliday junction resolvase
gi|119672162|emb|CAL96076.1| putative Hollyday junction resolvase [Azoarcus sp. BH72]
Length = 156
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+ D G RIG+A+ + R A+P V ++ +++ + E A ++GLP ++
Sbjct: 20 AFDFGLARIGVAVGELETRHANPL-LTVHEEANAARFAIIARLLDEWKPVALVVGLPGHL 78
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVDS 138
+G E R F N + + +P DERL++ +A++ L D +S + R +D+
Sbjct: 79 DGREHELAPRCRRFA-NQLHGRFGIPVHLVDERLSSAAAERQLHDAGLSGWQARKPVLDA 137
Query: 139 IAAALILQEVLD 150
+AA LILQ LD
Sbjct: 138 VAAQLILQHFLD 149
>gi|188534953|ref|YP_001908750.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
gi|188029995|emb|CAO97879.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
Length = 140
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q S D GTK IG+AI A P L + + + + ++GL
Sbjct: 3 SQTFLSFDFGTKSIGVAIGQRLTGTARPLNALKAQDGIPDWNRIEALLKEWQPERVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F N + + V DERL+TV A+ L + R
Sbjct: 63 PLNMDGSEQPLTARARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121
Query: 136 VDSIAAALILQEVLD 150
VDS++A +IL+ +
Sbjct: 122 VDSLSAVIILESWFE 136
>gi|70733116|ref|YP_262889.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
Pf-5]
gi|146325591|sp|Q4K4E4|RUVX_PSEF5 RecName: Full=Putative Holliday junction resolvase
gi|68347415|gb|AAY95021.1| conserved hypothetical protein TIGR00250 [Pseudomonas fluorescens
Pf-5]
Length = 145
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 6 ILGFDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+GS F + R VPF DERLTT A+ + L R VD
Sbjct: 66 MDGSPSDMCVRAEKFARRLNGR-FNVPFYTHDERLTTFEAKGERLARGGQKGSYRDNPVD 124
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD + L
Sbjct: 125 AIAAALLLQGWLDENAGL 142
>gi|54293569|ref|YP_125984.1| hypothetical protein lpl0621 [Legionella pneumophila str. Lens]
gi|62900943|sp|Q5WYW4|RUVX_LEGPL RecName: Full=Putative Holliday junction resolvase
gi|53753401|emb|CAH14854.1| hypothetical protein lpl0621 [Legionella pneumophila str. Lens]
Length = 139
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D G KRIG+A+ A P + K + IT N A I+GLP ++
Sbjct: 8 GFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVGLPTCID 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
E + R F + ++ +P DERL+TV A+ L + R+ + +VDSIA
Sbjct: 68 DRELYTTSAARRFAKQL-HKQFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKAEVDSIA 126
Query: 141 AALILQEVLDR 151
A +IL++ L +
Sbjct: 127 ACVILEQWLQQ 137
>gi|50122846|ref|YP_052013.1| Holliday junction resolvase-like protein [Pectobacterium
atrosepticum SCRI1043]
gi|62900970|sp|Q6D075|RUVX_ERWCT RecName: Full=Putative Holliday junction resolvase
gi|49613372|emb|CAG76823.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 139
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ + + D GTK IG+AI +++T TA L SF E I +
Sbjct: 3 NRTLLAFDFGTKSIGVAIG---------------QEITGTARALTSFKAQEGIPDWQKVE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E P R F N + + V DERL+TV A+
Sbjct: 48 KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVAIELHDERLSTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L + + VD+ +A +IL+ +
Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136
>gi|261823143|ref|YP_003261249.1| Holliday junction resolvase-like protein [Pectobacterium wasabiae
WPP163]
gi|261607156|gb|ACX89642.1| Holliday junction resolvase YqgF [Pectobacterium wasabiae WPP163]
Length = 139
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ + + D GTK IG+AI +++T TA L SF E I +
Sbjct: 3 NRTLLAFDFGTKSIGVAIG---------------QEITGTARALTSFKAQEGIPDWQKVE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E P R F N + + V DERL+TV A+
Sbjct: 48 KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVAIELHDERLSTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L + + VD+ +A +IL+ +
Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136
>gi|123968388|ref|YP_001009246.1| endonuclease [Prochlorococcus marinus str. AS9601]
gi|167012750|sp|A2BQS8|RUVX_PROMS RecName: Full=Putative Holliday junction resolvase
gi|123198498|gb|ABM70139.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. AS9601]
Length = 153
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+K KP + I S+D+GTKRIGLA DP ++ P + R + Q + ++I N+
Sbjct: 1 MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127
FI+G+PL+ G + + + ++ ++ +PF + +E +T S+++ I
Sbjct: 61 TGFIVGIPLDEKGKMTTQAIDCKNYGQ-LLSNELKLPFSYVNEHSSTWESSERFGI---- 115
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+K + +DS +A +IL++ ++ LE G
Sbjct: 116 -KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147
>gi|157736482|ref|YP_001489165.1| Holliday junction resolvase-like protein [Arcobacter butzleri
RM4018]
gi|157698336|gb|ABV66496.1| conserved hypothetical protein, putative Holliday junction
resolvase [Arcobacter butzleri RM4018]
Length = 126
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 16/134 (11%)
Query: 19 IASIDLGTKRIGLAI---SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ASID+G KRIG+AI SD P+ ++RK Q A ++ +F+ I I+G
Sbjct: 3 LASIDVGLKRIGVAICLTSD----IVTPQNAILRKNRNQAANDVNTFLKEWEIEKLIVGF 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + + H FV N+++ + +P+ F +E ++++ A++ LI + + KR +
Sbjct: 59 PTSSEDMQNRIKH----FV-NLLE--LQIPYEFCEENMSSIEAEE-LIKGEI-KYKRDGR 109
Query: 136 VDSIAAALILQEVL 149
VDS+AA +IL+ L
Sbjct: 110 VDSLAAKIILERYL 123
>gi|157413221|ref|YP_001484087.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
9215]
gi|167012748|sp|A8G4H0|RUVX_PROM2 RecName: Full=Putative Holliday junction resolvase
gi|157387796|gb|ABV50501.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
9215]
Length = 153
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 8/153 (5%)
Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+K KP + I S+D+G KRIGLA DP ++ P + R K Q + ++I N+
Sbjct: 1 MKFCKPKPKSILSLDIGNKRIGLAYCDPLCITSNILPAVKRFKNNQEIKIIRNYINEYNL 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127
FI+G+PL+ G + + + ++ ++ +PF F +E +T S+ + I
Sbjct: 61 TGFIVGIPLDERGQMTTQAIDCKNYGQ-LLSYELRLPFSFVNEHSSTWESSNRFGI---- 115
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+K + +DS +A +IL++ ++ LE G
Sbjct: 116 -KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147
>gi|261867346|ref|YP_003255268.1| Holliday junction resolvase-like protein [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412678|gb|ACX82049.1| Holliday junction resolvase-like protein [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 139
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GTK IG A+ A P + + I A ++GLPLN
Sbjct: 5 VLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIEKCIQEWQPARIVVGLPLN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E P + F + R VP DERLTT A+ + KVD
Sbjct: 65 MDGTEQPLTLRAKKFAKRLHGR-FNVPVDLQDERLTTTEARSEIFSRGGYHALNKSKVDG 123
Query: 139 IAAALILQEVLDRIS 153
I+A LIL+ + +
Sbjct: 124 ISACLILESWFENYA 138
>gi|332307597|ref|YP_004435448.1| Holliday junction resolvase YqgF [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332174926|gb|AEE24180.1| Holliday junction resolvase YqgF [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 143
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 21/143 (14%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA-------- 70
+ + D GTK IG+A+ A P A+ + I +I A
Sbjct: 9 VLAFDFGTKSIGVAVGQEVTGTASPL----------DAINAVDGIPNWDIVAKVFEQWQP 58
Query: 71 --FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
I+GLPLNM+GS + + F N ++ K VP DERLTTV A+ L +M
Sbjct: 59 DLAIVGLPLNMDGSFQQVTFAAKKFA-NRLNAKYRVPIETVDERLTTVDAKARLFEMGGF 117
Query: 129 RKKRIQKVDSIAAALILQEVLDR 151
+K +K+DS +A LI + +++
Sbjct: 118 KKLDKRKIDSASACLIFESWVEQ 140
>gi|290476318|ref|YP_003469222.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004]
gi|289175655|emb|CBJ82458.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004]
Length = 141
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 31/151 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ I + D GT IG AI +++T TA L +F E ++
Sbjct: 3 NRTIIAFDFGTHSIGTAIG---------------QEITGTARALSAFKAKEGSPSWELIE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I+GLPLNM+G+E R F N + + V DERLTT+ A+
Sbjct: 48 KLLKEWQPDLIIVGLPLNMDGTEQLVTAQARKFA-NRLHGRFGVQVELHDERLTTIEARS 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
L D + KVDS++A +IL+ ++
Sbjct: 107 HLFDHGGYKALDKGKVDSVSAVVILESWFEQ 137
>gi|320093739|ref|ZP_08025598.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
178 str. F0338]
gi|319979324|gb|EFW10815.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
178 str. F0338]
Length = 156
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+GT R+G+A +DP + P L R EL + + + ++GLP ++
Sbjct: 4 GVDVGTVRVGVARTDPEGILSIPVRTLRRADDWSDVEELATIVAQYDAIEVLVGLPRHLK 63
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
G EG R + + KV P V DERL++ A Q L V +D
Sbjct: 64 GGEGVSAKGARRYARRV---KVACPGVRVAMVDERLSSTQAHQRLRARGVPETDHRGVID 120
Query: 138 SIAAALILQEVLD--RIS 153
+AA +I++ LD RIS
Sbjct: 121 QVAAQIIIEHALDTERIS 138
>gi|320540154|ref|ZP_08039809.1| putative Holliday junction resolvase [Serratia symbiotica str.
Tucson]
gi|320029820|gb|EFW11844.1| putative Holliday junction resolvase [Serratia symbiotica str.
Tucson]
Length = 140
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D G+K IG AI A + + ++ + ++GL
Sbjct: 3 NRTVIAFDFGSKSIGAAIGQELTGSARALAAFKAQSGSPDWQKIAKLLQEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F N + + V DERL+TV A+ L D R
Sbjct: 63 PLNMDGSEQPVTEQARKFA-NRLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ R
Sbjct: 122 VDSASAVVILESWFGR 137
>gi|90023278|ref|YP_529105.1| Holliday junction resolvase-like protein [Saccharophagus degradans
2-40]
gi|146325605|sp|Q21EI6|RUVX_SACD2 RecName: Full=Putative Holliday junction resolvase
gi|89952878|gb|ABD82893.1| Holliday junction resolvase YqgF [Saccharophagus degradans 2-40]
Length = 142
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + + D GTKRIG A+ A+ + K+ + + + I+GL
Sbjct: 3 SQTLLAFDFGTKRIGAAVGQSITCTANILNTIPAKEGIPNWDTIEALLKEWQPDTVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E + F N I + VP +DERLTT A+++ +
Sbjct: 63 PLNMDGTENELCRRAKKF-GNRIHGRFRVPVEMFDERLTTREAKELAWEEGHKGNYANDP 121
Query: 136 VDSIAAALILQ 146
VDSIAA LIL+
Sbjct: 122 VDSIAARLILE 132
>gi|242237995|ref|YP_002986176.1| Holliday junction resolvase-like protein [Dickeya dadantii Ech703]
gi|242130052|gb|ACS84354.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech703]
Length = 139
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GT+ IG+AI A P L + T ++ + + I+GL
Sbjct: 3 NRTVMAFDFGTRSIGVAIGQEITGTARPLLSLKAQDGTPDWQKIEALLNEWQPDLVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + R V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQPITARARKFAQRLHGR-FGVAIQLHDERLSTVEARADLFERGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDRIS 153
VD+ +A +IL+ ++ S
Sbjct: 122 VDAASAVIILESWFEQQS 139
>gi|319949823|ref|ZP_08023842.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4]
gi|319436514|gb|EFV91615.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4]
Length = 151
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELL---SFITTENIAAFIIGLP 76
+D+GT RIG+A DP A P V A EL I + ++GLP
Sbjct: 12 GLDVGTARIGVASCDPDGILATPVETIRVVDGDPGWAAELRRLGELIAEYDAVGVVVGLP 71
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
++ G E R+F + VP DERLTTV+A L + +K+ +
Sbjct: 72 TSLKGRETASTAMARSFADALTTASPEVPVELVDERLTTVTAGAALHGAGRNTRKQRDVI 131
Query: 137 DSIAAALILQEVLD 150
D AA ++LQ +D
Sbjct: 132 DQAAAVVLLQAWID 145
>gi|251793467|ref|YP_003008196.1| Holliday junction resolvase-like protein [Aggregatibacter
aphrophilus NJ8700]
gi|247534863|gb|ACS98109.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700]
Length = 139
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GTK IG A+ A P + + I A ++GLPLN
Sbjct: 5 VLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIGKTIKEWQPARIVVGLPLN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E + F N + + +P DERLTT A+ + R KVD
Sbjct: 65 MDGTEQELTLRAKKFA-NRLHGRFNLPVELQDERLTTTEARSEIFSRGGYRALNKSKVDG 123
Query: 139 IAAALILQEVLDRIS 153
I+A LIL+ ++ S
Sbjct: 124 ISACLILESWFEQYS 138
>gi|168021153|ref|XP_001763106.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685589|gb|EDQ71983.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 172
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLNM 79
+DLG + GLAIS G +A PRP V ++ LE +L + F++GLP
Sbjct: 17 GVDLGDAKTGLAISLGG--YA-PRPLTVVRQRGDKLLETILQVGIPQRADEFVVGLPKAW 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFV-FW-----DERLTTVSAQQILIDMNVSRKKRI 133
+G + + + R+F + + V + W DE T+ A +IDM +R+ R
Sbjct: 74 DGKDSDQANKCRSFAGRLANIAGVVAYCRGWRVYLQDEYGTSQDALDYMIDMGSNRRSRK 133
Query: 134 QKVDSIAAALIL 145
+++D+ AA +L
Sbjct: 134 EQLDAYAATALL 145
>gi|283479686|emb|CAY75602.1| putative Holliday junction resolvase [Erwinia pyrifoliae DSM 12163]
Length = 141
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + + D GTK IG+AI A P L + + + + ++GL
Sbjct: 4 HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F N + + V DERL+TV A+ L + R
Sbjct: 64 PLNMDGSEQPLTVRARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122
Query: 136 VDSIAAALILQEVLD 150
VDS++A +IL+ +
Sbjct: 123 VDSLSAVIILESWFE 137
>gi|259909608|ref|YP_002649964.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
gi|224965230|emb|CAX56762.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
Length = 140
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + + D GTK IG+AI A P L + + + + ++GL
Sbjct: 3 HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F N + + V DERL+TV A+ L + R
Sbjct: 63 PLNMDGSEQPLTVRARKFA-NRLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121
Query: 136 VDSIAAALILQEVLD 150
VDS++A +IL+ +
Sbjct: 122 VDSLSAVIILESWFE 136
>gi|257453530|ref|ZP_05618820.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
gi|257448988|gb|EEV23941.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
Length = 156
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + +D G ++G+A+ + + A P ELL I + ++ IIGLP
Sbjct: 12 ETVMGLDFGIAKMGIALGNTLTQTASPLMQFKMDNGKPNWDELLKIIESWQVSTIIIGLP 71
Query: 77 LNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
LNM+GS + + F H++ + P + DERLT+ A+ + + + + +
Sbjct: 72 LNMDGSASELGNRAKKFARRLKHHLEEAHRPRPIILADERLTSREAKSLAWEYGLIKSDK 131
Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
+ +DSIA+A++L S+L S +G
Sbjct: 132 -EPIDSIASAIMLG------SWLRSGEG 152
>gi|54025613|ref|YP_119855.1| Holliday junction resolvase-like protein [Nocardia farcinica IFM
10152]
gi|62900947|sp|Q5YTK0|RUVX_NOCFA RecName: Full=Putative Holliday junction resolvase
gi|54017121|dbj|BAD58491.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 180
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFIIG 74
ID+G+ RIG+A SDP A P + R K V+ + + I+G
Sbjct: 23 GIDVGSVRIGVASSDPDGILATPVETVPRAKKVPRGTVSPDIARIAEIVREYEAVEVIVG 82
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + G +G + AF + V DERLTTVSA + L D V + + Q
Sbjct: 83 LPRTLRGEKGSAATAAIAFAERLRREIPDVAIRLSDERLTTVSAARALRDSGVRARGQRQ 142
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA ILQ LD S + S G
Sbjct: 143 VIDQAAAVSILQGWLDERSAVMRSVG 168
>gi|307728796|ref|YP_003906020.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1003]
gi|307583331|gb|ADN56729.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1003]
Length = 146
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + + A P + + E+ I A ++GLP++ +
Sbjct: 13 AFDYGEKRIGVAVGNSLTKSARPLVIVQNRSREYRFAEVGKLIAEWKPDALVVGLPMHPD 72
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ R F N ++ + +P + DER ++V A+ L + K R ++D+ A
Sbjct: 73 GTPHEMTQLARRF-GNQLNGRFNLPVTWVDERYSSVEAEAGL----RATKGRADRLDAEA 127
Query: 141 AALILQEVLDRIS 153
A++ILQ+ LD +S
Sbjct: 128 ASIILQQYLDGLS 140
>gi|94501646|ref|ZP_01308162.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65]
gi|94426222|gb|EAT11214.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65]
Length = 154
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 10/152 (6%)
Query: 14 KPNQPIASI---DLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTE-N 67
KP + I + D GTKR+G+A+ G+R + + K + E L + E
Sbjct: 5 KPTEKIKRVMGFDFGTKRMGVAM---GQRLTQQAQGISCINAKDGKPNWEQLDALVEEWQ 61
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
F++GLP NM+GSE F + R +P DERLTT A+ I
Sbjct: 62 PDGFVVGLPFNMDGSESDMSRRANKFSKRLHGR-YGLPSYTIDERLTTFEAKHIARQQGH 120
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+ VD +AA IL+ L E S+
Sbjct: 121 KGHYKSDPVDELAAQFILETWLSEFPLSEQSQ 152
>gi|77461533|ref|YP_351040.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
Pf0-1]
gi|126352256|sp|Q3K5A5|RUVX_PSEPF RecName: Full=Putative Holliday junction resolvase
gi|77385536|gb|ABA77049.1| putative holliday junction resolvase [Pseudomonas fluorescens
Pf0-1]
Length = 145
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 2/141 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 6 ILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + R +PF DERLTT A+ + L+ R VD
Sbjct: 66 MDGTPSEMCARAEKFARRLNGR-FNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVD 124
Query: 138 SIAAALILQEVLDRISFLESS 158
+IAAAL+LQ LD + L S
Sbjct: 125 AIAAALLLQGWLDENTALFES 145
>gi|253690074|ref|YP_003019264.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|259495709|sp|C6DFI9|RUVX_PECCP RecName: Full=Putative Holliday junction resolvase
gi|251756652|gb|ACT14728.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 139
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
++ I + D GTK IG+AI +++T TA L SF E I +
Sbjct: 3 SRTILAFDFGTKSIGVAIG---------------QEITGTARPLTSFKAQEGIPDWQKVE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E P R F N + + V DERL+TV A+
Sbjct: 48 KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVAIALHDERLSTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L + + VD+ +A +IL+ +
Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136
>gi|325981453|ref|YP_004293855.1| Holliday junction resolvase YqgF [Nitrosomonas sp. AL212]
gi|325530972|gb|ADZ25693.1| Holliday junction resolvase YqgF [Nitrosomonas sp. AL212]
Length = 161
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D G KR+G+AI + AHP + + + + + I T F++G+PL+
Sbjct: 23 ILAFDFGKKRVGVAIGNTALGVAHPLITIDSEVTNKRFVMIAQLIDTWQPVLFVVGMPLH 82
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G ++ F + R +P V DER T+ A IL + V +++ +D
Sbjct: 83 SDGIVHELTQLSQRFARRLAGR-FNIPVVMQDERYTSQIASTILREAGVVGREQKSVLDQ 141
Query: 139 IAAALILQEVLD 150
IAA ILQ D
Sbjct: 142 IAAQQILQSFFD 153
>gi|284929110|ref|YP_003421632.1| hypothetical protein UCYN_05470 [cyanobacterium UCYN-A]
gi|284809569|gb|ADB95274.1| conserved hypothetical protein TIGR00250 [cyanobacterium UCYN-A]
Length = 136
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KRIG+A D A + R+ T +L I T ++GLP+ M+
Sbjct: 2 GLDVGKKRIGVAGCDGTGLIATELITIHRQSFTSDIEKLKKLIETREATKLVVGLPILMD 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137
GS G + + F N I + +P + DER T++ A + ++ RK + VD
Sbjct: 62 GSLGSQAKQIQKF-GNRISTILNLPIEYIDERFTSLEA---VSELKAQRKYSSYEKGLVD 117
Query: 138 SIAAALILQEVLDR 151
AA +ILQ LD+
Sbjct: 118 CYAAKIILQRWLDQ 131
>gi|296127814|ref|YP_003635066.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563]
gi|296019630|gb|ADG72867.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563]
Length = 141
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D G K+ G A D + P + + L+ I +NI + GLPL+
Sbjct: 2 VLGVDFGRKKTGTAFMDMNIKIPFPLLLIEESNAKKVKRALMDIIEEKNIDTVVFGLPLS 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV-- 136
G E R F ++ + V V VF DE T+ A IL RKK ++K
Sbjct: 62 DEGKESEWCSEIRRFSDFLL-KSVKVNVVFVDEYGTSKEADYIL----RGRKKNVKKKAN 116
Query: 137 DSIAAALILQEVLD 150
D IAAALIL+ L+
Sbjct: 117 DLIAAALILENYLN 130
>gi|212550493|ref|YP_002308810.1| Holliday junction resolvase-like protein [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|226725483|sp|B6YQC7|RUVX_AZOPC RecName: Full=Putative Holliday junction resolvase
gi|212548731|dbj|BAG83399.1| putative Holliday junction resolvase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 138
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 19/141 (13%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI--TTEN--IAAFIIG 74
I +ID G KR G AISDP + +V VT + + + ++ TEN I F++G
Sbjct: 4 IVAIDYGEKRTGFAISDPLK-------MIVSSFVTVLSRKAVMYLKNCTENYDIELFVLG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKK 131
P M+ + + F N+ R+V +P + DER T+V A +I+I+ V + K
Sbjct: 57 EPRQMDYTPSENMPRVEKFKRNL--RRV-IPSIDVQMVDERFTSVLAHRIMIEGGVKKIK 113
Query: 132 RIQK--VDSIAAALILQEVLD 150
R K VD ++AA++LQ L+
Sbjct: 114 RQDKGLVDRLSAAILLQTYLE 134
>gi|86142251|ref|ZP_01060761.1| Holliday junction resolvase-like protein [Leeuwenhoekiella
blandensis MED217]
gi|85831003|gb|EAQ49460.1| Holliday junction resolvase-like protein [Leeuwenhoekiella
blandensis MED217]
Length = 134
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 14/137 (10%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
I ++D GTKR G+A++D + A T ELL F+ EN+ ++G
Sbjct: 4 ILALDFGTKRTGIAVTDELQLIASGL-------TTVNTKELLDFLKKYFAEENVELILLG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P MN +E V + +++ +P DER T+ A Q ++D + +K+R
Sbjct: 57 EPKRMN-NEASHVEAEILKFRESLEKITSIPIKRVDERFTSKMAAQTMLDSGLKKKQRKN 115
Query: 135 K--VDSIAAALILQEVL 149
K +D I+A +ILQ L
Sbjct: 116 KALLDEISATIILQTYL 132
>gi|116074750|ref|ZP_01472011.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9916]
gi|116067972|gb|EAU73725.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9916]
Length = 157
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ S+D+G KRIGLA DP P P + R + Q L + TT + A ++GLPL+
Sbjct: 9 VLSLDVGRKRIGLAGCDPLGISVRPLPAIRRSRFDQDLEHLRALCTTRQVDALVVGLPLD 68
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G + + + + + +P + +E ++ +A + +++ R R+ DS
Sbjct: 69 DKGQRTAQAEHCERYGRRLA-QTLALPLAWVNEHSSSWAAGESR-NLHGDRSGRL---DS 123
Query: 139 IAAALILQEVL 149
AAAL+L++ L
Sbjct: 124 EAAALLLEQWL 134
>gi|15827175|ref|NP_301438.1| Holliday junction resolvase-like protein [Mycobacterium leprae TN]
gi|221229653|ref|YP_002503069.1| Holliday junction resolvase-like protein [Mycobacterium leprae
Br4923]
gi|32130062|sp|Q9CCS9|RUVX_MYCLE RecName: Full=Putative Holliday junction resolvase
gi|254767521|sp|B8ZUJ7|RUVX_MYCLB RecName: Full=Putative Holliday junction resolvase
gi|13092723|emb|CAC30021.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932760|emb|CAR70606.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length = 184
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 8 DLVKSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
DL K+L P + ID+G+ RIG+A SDP A P + R + + L +
Sbjct: 16 DLSKNLDPERGRRLGIDVGSVRIGVAFSDPDGILATPVETVRRYRSAKHLRRLAELVVEL 75
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
+ ++GLP + G + R VP DERLTTVSAQ++L
Sbjct: 76 QVVEVVVGLPWTLTDRTGSSAKDAIDTAEALARRVAPVPVRLVDERLTTVSAQRLLRAAG 135
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRI 152
V K + +D AA +ILQ LD+
Sbjct: 136 VRAKDQRAVIDQAAAVVILQNWLDQC 161
>gi|332991910|gb|AEF01965.1| Holliday junction resolvase-like protein [Alteromonas sp. SN2]
Length = 144
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 9/146 (6%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG+A+ A P L + + ++GL
Sbjct: 6 SRTVLAFDFGTKSIGVAVGQEITGTASPLAALKARDGIPDWNVIEKLYEEWQPQLVVVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
PLNM+G+E + F + + R KV V DERLTT A+ +L ++ +K +
Sbjct: 66 PLNMDGTEQEVTQRAKKFANRLHGRFKVAVDLC--DERLTTTDAKSMLFELGGYKKLTKE 123
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
K+DS++A +I S++E+ G
Sbjct: 124 KIDSVSACVIF------TSWVENQYG 143
>gi|227357858|ref|ZP_03842206.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906]
gi|227161968|gb|EEI46986.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906]
Length = 139
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 31/151 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ + D GTK IG+AI ++VT TA L SF + I +
Sbjct: 3 NRTVMGFDFGTKSIGVAIG---------------QEVTGTARPLASFKAKDGIPDWSQIE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E + F N + + V DERL+TV A+
Sbjct: 48 KIIKEWQPDLVVVGLPLNMDGTEQLVTTQAKKFA-NRLHGRFGVQIALHDERLSTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
L + R VD+ +A +IL+ +R
Sbjct: 107 HLFEQGGYRSLDKGSVDATSAVIILESWFER 137
>gi|328950126|ref|YP_004367461.1| Holliday junction resolvase [Marinithermus hydrothermalis DSM
14884]
gi|328450450|gb|AEB11351.1| Holliday junction resolvase [Marinithermus hydrothermalis DSM
14884]
Length = 141
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G RIGLA D RFA R +L R + + +F E ++GLPL
Sbjct: 3 VVALDVGDARIGLAAGDTETRFAFGRGYLQRTSLEADVQAVAAFAAREGAQRVVVGLPLR 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+GS + V + R+ + DER TT AQ + + +++ ++D
Sbjct: 63 TDGSLSAQAEKVLRLVEAL--RRAGLVVETVDERYTTQLAQARVRALPKRKRREKGRLDE 120
Query: 139 IAAALILQEVL 149
AA IL+ L
Sbjct: 121 AAAVAILETYL 131
>gi|222823946|ref|YP_002575520.1| conserved hypothetical protein (UPF0081 domain protein)
[Campylobacter lari RM2100]
gi|254767502|sp|B9KCI0|RUVX_CAMLR RecName: Full=Putative Holliday junction resolvase
gi|222539168|gb|ACM64269.1| conserved hypothetical protein (UPF0081 domain protein)
[Campylobacter lari RM2100]
Length = 128
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G KRIG+A+ + A P ++RK Q A E+ +I ++ ++G+PL
Sbjct: 5 ALDIGLKRIGVALC-VNKSIAMPLEAIIRKNRNQAANEVKKYIKEYDVNTLVVGVPLG-G 62
Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
SE F+ + D++V+ F DE ++ +AQ++ + V+ KK+ K+DS+
Sbjct: 63 SSEDEMRKRVEHFISLLDFDKEVF----FVDESFSSKNAQELGM---VNLKKKDGKLDSL 115
Query: 140 AAALILQE 147
AA L L++
Sbjct: 116 AAYLFLKD 123
>gi|312793390|ref|YP_004026313.1| holliday junction resolvase yqgf [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312877035|ref|ZP_07737008.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796176|gb|EFR12532.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
lactoaceticus 6A]
gi|312180530|gb|ADQ40700.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 138
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G R+G+AISDP + A P + + EL S +I +IG PL+
Sbjct: 3 ILCLDIGNSRVGVAISDPLKITAQP-VMTIELRNKDLFEELDSIFQRFSIEKVVIGYPLS 61
Query: 79 -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQKV 136
++ + + I + V V WDER +T + ++++ ++N RKK++ +
Sbjct: 62 KLHPDQKDEKLKKIDEISEKIKSRYNVEIVKWDERFSTKAVERVMNEELNWKRKKKV--I 119
Query: 137 DSIAAALILQEVLD 150
D +AA ILQ LD
Sbjct: 120 DKVAAVYILQGYLD 133
>gi|109897479|ref|YP_660734.1| Holliday junction resolvase YqgF [Pseudoalteromonas atlantica T6c]
gi|109699760|gb|ABG39680.1| Holliday junction resolvase YqgF [Pseudoalteromonas atlantica T6c]
Length = 143
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 31/148 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
+ + D GTK IG+A+ ++VT TA L + + I +
Sbjct: 9 VLAFDFGTKSIGVAVG---------------QEVTGTASPLDAIKAVDGIPNWDVVAKVF 53
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLPLNM+G+ + + F N + K VP DERLTTV A+ L
Sbjct: 54 EQWQPDLALVGLPLNMDGTFQQVTFAAKKF-GNRLSAKYRVPVETVDERLTTVDAKARLF 112
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDR 151
+M +K QK+DS +A LI + +++
Sbjct: 113 EMGGFKKLDKQKIDSASACLIFESWVEQ 140
>gi|72382039|ref|YP_291394.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str.
NATL2A]
gi|146325589|sp|Q46LD7|RUVX_PROMT RecName: Full=Putative Holliday junction resolvase
gi|72001889|gb|AAZ57691.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str.
NATL2A]
Length = 144
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ S+D+G KRIG+A DP G H P + R + E + I G PL
Sbjct: 9 VLSLDIGDKRIGIAGCDPLGISITH-LPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPL 67
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+MNG E + + + + + + +P F +E +TV A++ N + ++D
Sbjct: 68 DMNGMETKQSIRCKKYGIKLA-KCLKLPLAFINEHCSTVEAKEKFSLKN----DKTGRID 122
Query: 138 SIAAALILQEVL 149
S AAA++LQ+ L
Sbjct: 123 SAAAAILLQQWL 134
>gi|224826991|ref|ZP_03700089.1| Holliday junction resolvase YqgF [Lutiella nitroferrum 2002]
gi|224600824|gb|EEG07009.1| Holliday junction resolvase YqgF [Lutiella nitroferrum 2002]
Length = 142
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + D G +RIG+A+ + AHP + + Q + I A ++G
Sbjct: 2 PDGTTLAFDFGERRIGVAMGETLLGIAHPLTTIDTEITEQRFAAIGKLIEEWRPAQLVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E +R F N + + +P DER T++ A+ +L + V +K+
Sbjct: 62 LPVHADGTEHDLTRLSRRFA-NRLKGRFGLPVWLVDERHTSLIAESLLNEAGVRGRKQKP 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA ILQ ++
Sbjct: 121 ALDQVAAQAILQTWFEQ 137
>gi|108804198|ref|YP_644135.1| Holliday junction resolvase YqgF [Rubrobacter xylanophilus DSM
9941]
gi|124107443|sp|Q1AWA5|RUVX_RUBXD RecName: Full=Putative Holliday junction resolvase
gi|108765441|gb|ABG04323.1| Holliday junction resolvase YqgF [Rubrobacter xylanophilus DSM
9941]
Length = 139
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P +A++DLG G+A+SDP R A P L + ++ L + E + ++G
Sbjct: 4 PEGRVAALDLGEVWTGVAVSDPTRTLARP---LEVVRTSELPGVLRRLVREEGVGEVLVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + G G + + ++ V FV WDERLTT L + ++ +
Sbjct: 61 LPRTLRGEVGFQARRVSDRLSSLRAGFPEVRFVEWDERLTTKVVSGPLREGRRRGRR--E 118
Query: 135 KVDSIAAALILQEVLD 150
+VD +AAA +LQE L+
Sbjct: 119 RVDHLAAARMLQEYLE 134
>gi|156932611|ref|YP_001436527.1| Holliday junction resolvase-like protein [Cronobacter sakazakii
ATCC BAA-894]
gi|167012722|sp|A7MJR8|RUVX_ENTS8 RecName: Full=Putative Holliday junction resolvase
gi|156530865|gb|ABU75691.1| hypothetical protein ESA_00393 [Cronobacter sakazakii ATCC BAA-894]
Length = 138
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 11/136 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ----TALE-LLSFITTENIAAFIIGL 75
+ D GTK IG+AI R A RP K T +E LL +++ I+GL
Sbjct: 7 AFDFGTKSIGVAIGQ--RVTATARPLTAIKAQNGNPDWTLIEKLLKEWQPDDV---IVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N + + + DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARTFA-NRLHGRFGIKVTLHDERLSTVEARAGLFERGGFRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVVILESYFEQ 136
>gi|284032273|ref|YP_003382204.1| Holliday junction resolvase YqgF [Kribbella flavida DSM 17836]
gi|283811566|gb|ADB33405.1| Holliday junction resolvase YqgF [Kribbella flavida DSM 17836]
Length = 152
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 12/137 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT-TENIAAF--IIGLPL 77
++D+G RIG+A SDP A P + V + +L +T ++ AF ++GLP
Sbjct: 8 ALDIGDARIGVASSDPHGILATPV-----ETVRRGPGDLDRIVTLVADLEAFEIVVGLPR 62
Query: 78 NMNGSEGP---RVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
++NG EGP ++ +T V ++ R+V DER TTV+A+++L + KR
Sbjct: 63 SLNGGEGPAAVKIRATAEQVRQLVAARQVDTEVRLVDERFTTVTAERMLRERGKKGSKRR 122
Query: 134 QKVDSIAAALILQEVLD 150
VD AA +ILQ LD
Sbjct: 123 AVVDQAAAVVILQHALD 139
>gi|146312992|ref|YP_001178066.1| Holliday junction resolvase-like protein [Enterobacter sp. 638]
gi|167012721|sp|A4WE85|RUVX_ENT38 RecName: Full=Putative Holliday junction resolvase
gi|145319868|gb|ABP62015.1| Holliday junction resolvase YqgF [Enterobacter sp. 638]
Length = 138
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+AI A P + + T + + A I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAIGQRITGTARPLTAIKAQDGTPDWTLIERLLKEWQPEAVIVGLPLNMD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E P R F N I + DERL+TV A+ L + R VDS +
Sbjct: 67 GTEQPLTARARKFA-NKIHGRFGAVVKLHDERLSTVEARAGLFEHGGFRALNKGSVDSAS 125
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 126 AVIILESFFEQ 136
>gi|92112194|ref|YP_572122.1| Holliday junction resolvase YqgF [Chromohalobacter salexigens DSM
3043]
gi|146325563|sp|Q1R1I5|RUVX_CHRSD RecName: Full=Putative Holliday junction resolvase
gi|91795284|gb|ABE57423.1| Holliday junction resolvase YqgF [Chromohalobacter salexigens DSM
3043]
Length = 148
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GT+RIG+A+ + A L + ++ + + ++GLPLN
Sbjct: 9 VLAFDFGTRRIGVAVGNEMLGSATALAPLPARDGIPDWQQIAALLEEWQPDLLVVGLPLN 68
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E R F N + + P +DER +T +A++I D R VD
Sbjct: 69 MDGTESDMSRRARKF-GNRLHGRFGKPVEVFDERGSTRAAKRIARDAGHRGNYRDDGVDG 127
Query: 139 IAAALILQEVLDRISFLE 156
IAA LIL+ +FL+
Sbjct: 128 IAAQLILESFFADDTFLQ 145
>gi|332286753|ref|YP_004418664.1| holliday junction resolvase [Pusillimonas sp. T7-7]
gi|330430706|gb|AEC22040.1| holliday junction resolvase [Pusillimonas sp. T7-7]
Length = 137
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + + D GTK+IG+AI + R A P L Q + + ++G
Sbjct: 5 PDSTLLAFDYGTKKIGVAIGNTLTRQARPLDILFPVTREQRFSAIAKLLKDWQPDKVVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPL +GSE R F N + + V V DER +++ AQQ+L +
Sbjct: 65 LPLATDGSEQYASLRCRRFA-NQLHGRFGVETVLVDERGSSMEAQQMLGNNTDD------ 117
Query: 135 KVDSIAAALILQEVLDRIS 153
D++AAA+ILQ LD ++
Sbjct: 118 --DAVAAAIILQRYLDGLA 134
>gi|50083614|ref|YP_045124.1| Holliday junction resolvase-like protein [Acinetobacter sp. ADP1]
gi|62900972|sp|Q6FF55|RUVX_ACIAD RecName: Full=Putative Holliday junction resolvase
gi|49529590|emb|CAG67302.1| putative Holliday junction resolvase [Acinetobacter sp. ADP1]
Length = 147
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q I + D GT+++G+AI + P K +LL + F++GL
Sbjct: 7 HQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPTLFLVGL 66
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + ++ DERLTT A+ L + +
Sbjct: 67 PLNMDDSESELSARARKFARRLRHQTNITTWMV-DERLTTREARDELESYQEQGRAKKIA 125
Query: 136 VDSIAAALILQ 146
DSIAA+L++Q
Sbjct: 126 ADSIAASLLIQ 136
>gi|227326191|ref|ZP_03830215.1| Holliday junction resolvase-like protein [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 139
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
++ I + D GTK IG+AI +++T TA L SF E I +
Sbjct: 3 SRTILAFDFGTKSIGVAIG---------------QEITGTARALTSFKAQEGIPDWQKVE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E P R F N + + V DERL+TV A+
Sbjct: 48 KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGVAIELHDERLSTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L + + VD+ +A +IL+ +
Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136
>gi|261380468|ref|ZP_05985041.1| putative Holliday junction resolvase [Neisseria subflava NJ9703]
gi|284796710|gb|EFC52057.1| putative Holliday junction resolvase [Neisseria subflava NJ9703]
Length = 151
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A D HP + + + + F++G
Sbjct: 5 PKGTVLAFDFGEARIGVAQGDAELGMTHPLATITGNSNDEKFEAIAKLVKEWQPKYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
LP + +G+E +R F + R +P V+W DER++++ A+ +L + V +K+
Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLP-VYWVDERMSSLYAESLLAEAQVFGRKQK 122
Query: 134 QKVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 123 SVLDQVAAQAILQGFFE 139
>gi|126696190|ref|YP_001091076.1| endonuclease [Prochlorococcus marinus str. MIT 9301]
gi|167012746|sp|A3PCK0|RUVX_PROM0 RecName: Full=Putative Holliday junction resolvase
gi|126543233|gb|ABO17475.1| Predicted endonuclease [Prochlorococcus marinus str. MIT 9301]
Length = 153
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+K KP + I S+D+G+KRIGLA DP ++ P + R + Q + ++I N+
Sbjct: 1 MKFCKPKPKSILSLDIGSKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127
FI+G+PL+ G + + + ++ ++ +PF + +E +T S+++ I
Sbjct: 61 TGFIVGIPLDEKGKMTTQAIDCKNYGQ-LLSNELKLPFSYVNEHSSTWESSERFGI---- 115
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+K + +DS +A +IL++ ++ LE G
Sbjct: 116 -KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147
>gi|152966975|ref|YP_001362759.1| Holliday junction resolvase YqgF [Kineococcus radiotolerans
SRS30216]
gi|226725529|sp|A6WCF6|RUVX_KINRD RecName: Full=Putative Holliday junction resolvase
gi|151361492|gb|ABS04495.1| Holliday junction resolvase YqgF [Kineococcus radiotolerans
SRS30216]
Length = 188
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79
++D+G+ R+GLA DP A P LVR + ++ A I+ GLPL++
Sbjct: 8 AVDVGSVRVGLAACDPAGVIASPVRTLVRDPGHDADVAEIAAEARARGAVEIVLGLPLSL 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GSEGP + ++ VP DERL+TV A + L + K+ VD
Sbjct: 68 DGSEGPAALRALDYADKIVRSVPEVPVRLVDERLSTVGAHRALHAAGLKEKQFRAVVDQA 127
Query: 140 AAALILQEVLD 150
AA ++LQ LD
Sbjct: 128 AAVVLLQATLD 138
>gi|308188042|ref|YP_003932173.1| Holliday junction resolvase [Pantoea vagans C9-1]
gi|308058552|gb|ADO10724.1| putative Holliday junction resolvase [Pantoea vagans C9-1]
Length = 139
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GL 75
Q + D GTK IG+A+ A P ++ + +++ + E F++ GL
Sbjct: 4 QTLLGFDFGTKSIGVAVGQELTGSARPLT-AIKAQDGIPDWQVIEKLLKEWQPDFVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N + + + DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQPLTDRARKFA-NRLHGRFGIRVELQDERLSTVEARAGLFERGGYRALNKGS 121
Query: 136 VDSIAAALILQEVLD 150
VDS +AA+ILQ+ +
Sbjct: 122 VDSQSAAIILQDWFE 136
>gi|251773417|gb|EES53966.1| Holliday junction resolvase YqgF [Leptospirillum ferrodiazotrophum]
Length = 168
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFI----TTENIAA 70
+ ID G +R+G+A+SDP R A P LVR Q +LL+ + T ++
Sbjct: 11 LMGIDWGGRRVGVALSDPSRTLARPLTVLVRDGSGTIPFQEGEKLLASLRKIATDHDVTG 70
Query: 71 FIIGLP-LNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+ G+P +++G P H+ V + R + +P DE ++ +A++I +
Sbjct: 71 LVFGIPYYHLSGD--PNPHAPLFLRVARDLSRDLALPLFLHDEGQSSEAAREIR-KGHPG 127
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
R+ Q +D +AAA +LQ LD
Sbjct: 128 RRNSAQSLDHVAAATLLQGFLD 149
>gi|261342366|ref|ZP_05970224.1| putative Holliday junction resolvase [Enterobacter cancerogenus
ATCC 35316]
gi|288315001|gb|EFC53939.1| putative Holliday junction resolvase [Enterobacter cancerogenus
ATCC 35316]
Length = 138
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-----LELLSFITTENIAAFIIGL 75
+ D GTK IG+A+ R RP K T LL +++ I+GL
Sbjct: 7 AFDFGTKSIGVAVGQ--RITGTARPLTALKANDGTPDWNLIERLLKEWQPDDV---IVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARKFA-NKIHGRFGVSVKLHDERLSTVEARAGLFEHGGFRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|296104613|ref|YP_003614759.1| putative holliday junction resolvase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059072|gb|ADF63810.1| putative holliday junction resolvase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295097488|emb|CBK86578.1| conserved hypothetical protein TIGR00250 [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 138
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-----LELLSFITTENIAAFIIGL 75
+ D GTK IG+A+ R RP K T LL +++ I+GL
Sbjct: 7 AFDFGTKSIGVAVGQ--RITGTARPLTALKANDGTPDWNLIERLLKEWQPDDV---IVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARKFA-NKIHGRFGVSVKLHDERLSTVEARAGLFEHGGFRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|111024086|ref|YP_707058.1| Holliday junction resolvase-like protein [Rhodococcus jostii RHA1]
gi|118597220|sp|Q0S0N6|RUVX_RHOSR RecName: Full=Putative Holliday junction resolvase
gi|110823616|gb|ABG98900.1| probable Holliday junction resolvase [Rhodococcus jostii RHA1]
Length = 178
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIA-AFIIGLP 76
ID+G+ RIG+A SDP A P + R K + ++ I E A I+GLP
Sbjct: 23 GIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRIADIVEEYEAVEVIVGLP 82
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ G G F + + +P DERLTTV+A + L + VS + + +
Sbjct: 83 QTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAARALRESGVSARGQRPVI 142
Query: 137 DSIAAALILQEVLDRIS 153
D AA ILQ LD S
Sbjct: 143 DQAAAVAILQGWLDERS 159
>gi|226366326|ref|YP_002784109.1| Holliday junction resolvase-like protein [Rhodococcus opacus B4]
gi|254767522|sp|C1B4H5|RUVX_RHOOB RecName: Full=Putative Holliday junction resolvase
gi|226244816|dbj|BAH55164.1| putative Holliday junction resolvase [Rhodococcus opacus B4]
Length = 178
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIA-AFIIGLP 76
ID+G+ RIG+A SDP A P + R K + ++ I E A I+GLP
Sbjct: 23 GIDVGSVRIGVASSDPDGILATPVETVPRSKDRGPDAPDIRRIADIVEEYEAVEVIVGLP 82
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ G G F + + +P DERLTTV+A + L + VS + + +
Sbjct: 83 QTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAARALRESGVSARGQRPVI 142
Query: 137 DSIAAALILQEVLDRIS 153
D AA ILQ LD S
Sbjct: 143 DQAAAVAILQGWLDERS 159
>gi|225076223|ref|ZP_03719422.1| hypothetical protein NEIFLAOT_01260 [Neisseria flavescens
NRL30031/H210]
gi|224952347|gb|EEG33556.1| hypothetical protein NEIFLAOT_01260 [Neisseria flavescens
NRL30031/H210]
Length = 151
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A D HP + + + + F++G
Sbjct: 5 PKGTVLAFDFGEARIGVAQGDAELGMTHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
LP + +G+E +R F + R +P V+W DER++++ A+ +L + V +K+
Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLP-VYWVDERMSSLYAESLLAEAQVFGRKQK 122
Query: 134 QKVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 123 SVLDQVAAQAILQGFFE 139
>gi|299470299|emb|CBN78349.1| Holliday junction resolvase-like protein [Ectocarpus siliculosus]
Length = 258
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TAL---ELLSFITTENIA 69
P+ +D+ G+A+SD + A P + R++ T+ AL +L + +
Sbjct: 97 GSPLVGLDVAPSNFGVAVSDETKTLAFPLTRVPRRQSTKKLDPALVIGKLREIVEDCSAC 156
Query: 70 AFIIGLPLNMNG-SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++G PL+ +G +EG + + + KV +P +DER+T+V A+ IL D +
Sbjct: 157 GLVVGWPLSKSGRAEGQCLMVLQFLRQLHLRGKVDIPVTLFDERMTSVEARGILKDDGLG 216
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
RK ++ D AA +ILQ LD
Sbjct: 217 RKI-AEREDETAAMVILQGFLD 237
>gi|300781085|ref|ZP_07090939.1| Holliday junction resolvase family protein [Corynebacterium
genitalium ATCC 33030]
gi|300532792|gb|EFK53853.1| Holliday junction resolvase family protein [Corynebacterium
genitalium ATCC 33030]
Length = 167
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
ID+GT RIG+A SD A P R + + LL I+ + ++GL
Sbjct: 20 GIDVGTVRIGVASSDRDGLLATPVETVERVTGFKDRDGADIDRLLDIISEYDAVEVVVGL 79
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P ++ G+ V + + R VP F DERLTTV A L V+ +
Sbjct: 80 PRDLKGNGSSSVKHAKEIAFRIGRRNPDVPVRFADERLTTVEATNALRLSGVNARDGRAV 139
Query: 136 VDSIAAALILQEVLD 150
+D AA ILQ LD
Sbjct: 140 IDQAAAVAILQSWLD 154
>gi|197284239|ref|YP_002150111.1| holliday junction resolvase [Proteus mirabilis HI4320]
gi|226731639|sp|B4EUS0|RUVX_PROMH RecName: Full=Putative Holliday junction resolvase
gi|194681726|emb|CAR40879.1| putative holliday junction resolvase [Proteus mirabilis HI4320]
Length = 139
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 31/151 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ + D GTK IG AI ++VT TA L SF + I +
Sbjct: 3 NRTVMGFDFGTKSIGAAIG---------------QEVTGTARPLASFKAKDGIPDWSQIE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E + F N + + V DERL+TV A+
Sbjct: 48 KIIKEWQPDLVVVGLPLNMDGTEQLVTTQAKKFA-NRLHGRFGVQIALHDERLSTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
L + R VD+ +A +IL+ +R
Sbjct: 107 HLFEQGGYRSLDKGSVDATSAVIILESWFER 137
>gi|319951884|ref|YP_004163151.1| holliday junction resolvase [Cellulophaga algicola DSM 14237]
gi|319420544|gb|ADV47653.1| Holliday junction resolvase [Cellulophaga algicola DSM 14237]
Length = 136
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 13/140 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G R G+A++D + A + K++ L +++ TE + ++G P
Sbjct: 4 IVALDYGKVRTGIAVTDELQLIASGLTTVATKELIDF---LKNYVATEKVELLVVGEPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVF---WDERLTTVSAQQILIDMNVSRKKRIQ 134
MN +V + A + I++ K P + DER T+ A Q +ID + +K+R
Sbjct: 61 MNN----QVSESEALILPFIEKLKASFPTIKIERQDERFTSKMAFQTMIDSGLKKKQRRD 116
Query: 135 K--VDSIAAALILQEVLDRI 152
K VD I+A +ILQ L+RI
Sbjct: 117 KALVDEISATIILQAYLNRI 136
>gi|297571414|ref|YP_003697188.1| Holliday junction resolvase YqgF [Arcanobacterium haemolyticum DSM
20595]
gi|296931761|gb|ADH92569.1| Holliday junction resolvase YqgF [Arcanobacterium haemolyticum DSM
20595]
Length = 153
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%)
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
I+GLP NM+GSEG + R + + R V DERLTTVSA Q+L +
Sbjct: 56 VIVGLPRNMDGSEGKSAKNARRWAKRLARRIAPVHVRMVDERLTTVSAHQMLHESGRKEI 115
Query: 131 KRIQKVDSIAAALILQEVL 149
VD +AA +IL+ L
Sbjct: 116 NHRSVVDQVAAVIILESAL 134
>gi|209518623|ref|ZP_03267441.1| Holliday junction resolvase YqgF [Burkholderia sp. H160]
gi|209500906|gb|EEA00944.1| Holliday junction resolvase YqgF [Burkholderia sp. H160]
Length = 146
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+ D G KRIG+A+ + R A P +V+ + + E L + E A ++GLP++
Sbjct: 13 AFDYGEKRIGVAVGNSLTRRARPL-VVVQNRSKEYRFEALGKLIAEWKPDALVVGLPMHP 71
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+ R + F N ++ + +P + DER ++V A+ + N R +D+
Sbjct: 72 DGTPHERTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAEAEIRAGNA----RADMLDAE 126
Query: 140 AAALILQEVLDRIS 153
AA++ILQ+ LD ++
Sbjct: 127 AASIILQQYLDGLT 140
>gi|15609691|ref|NP_217070.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis H37Rv]
gi|15842092|ref|NP_337129.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis CDC1551]
gi|31793737|ref|NP_856230.1| Holliday junction resolvase-like protein [Mycobacterium bovis
AF2122/97]
gi|121638439|ref|YP_978663.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148662393|ref|YP_001283916.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis H37Ra]
gi|148823750|ref|YP_001288504.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis F11]
gi|167968835|ref|ZP_02551112.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis H37Ra]
gi|215404503|ref|ZP_03416684.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis 02_1987]
gi|215412328|ref|ZP_03421088.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis 94_M4241A]
gi|215427950|ref|ZP_03425869.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis T92]
gi|215431512|ref|ZP_03429431.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis EAS054]
gi|218754294|ref|ZP_03533090.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis GM 1503]
gi|219558558|ref|ZP_03537634.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis T17]
gi|224990933|ref|YP_002645620.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253798365|ref|YP_003031366.1| hypothetical protein TBMG_01418 [Mycobacterium tuberculosis KZN
1435]
gi|254232676|ref|ZP_04926003.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254366759|ref|ZP_04982802.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551606|ref|ZP_05142053.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260187568|ref|ZP_05765042.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis CPHL_A]
gi|260201681|ref|ZP_05769172.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis T46]
gi|260205873|ref|ZP_05773364.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis K85]
gi|260205876|ref|ZP_05773367.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis K85]
gi|289444090|ref|ZP_06433834.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289448203|ref|ZP_06437947.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289553656|ref|ZP_06442866.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289570723|ref|ZP_06450950.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289575260|ref|ZP_06455487.1| Holliday junction resolvase [Mycobacterium tuberculosis K85]
gi|289575262|ref|ZP_06455489.1| predicted protein [Mycobacterium tuberculosis K85]
gi|289746346|ref|ZP_06505724.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289751173|ref|ZP_06510551.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289754672|ref|ZP_06514050.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289762724|ref|ZP_06522102.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|294994335|ref|ZP_06800026.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis 210]
gi|297635165|ref|ZP_06952945.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis KZN 4207]
gi|297732157|ref|ZP_06961275.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis KZN R506]
gi|298526027|ref|ZP_07013436.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306776828|ref|ZP_07415165.1| hypothetical protein TMAG_02358 [Mycobacterium tuberculosis
SUMu001]
gi|306785356|ref|ZP_07423678.1| hypothetical protein TMCG_01799 [Mycobacterium tuberculosis
SUMu003]
gi|306794036|ref|ZP_07432338.1| hypothetical protein TMEG_03230 [Mycobacterium tuberculosis
SUMu005]
gi|307085241|ref|ZP_07494354.1| hypothetical protein TMLG_02282 [Mycobacterium tuberculosis
SUMu012]
gi|313659491|ref|ZP_07816371.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis KZN V2475]
gi|54039585|sp|P67488|RUVX_MYCBO RecName: Full=Putative Holliday junction resolvase
gi|54042290|sp|P67487|RUVX_MYCTU RecName: Full=Putative Holliday junction resolvase
gi|167012735|sp|A1KLQ2|RUVX_MYCBP RecName: Full=Putative Holliday junction resolvase
gi|167012738|sp|A5U5Q4|RUVX_MYCTA RecName: Full=Putative Holliday junction resolvase
gi|254767520|sp|C1AF23|RUVX_MYCBT RecName: Full=Putative Holliday junction resolvase
gi|1781048|emb|CAB06184.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|13882373|gb|AAK46943.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|31619331|emb|CAD94769.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121494087|emb|CAL72565.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124601735|gb|EAY60745.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134152270|gb|EBA44315.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148506545|gb|ABQ74354.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis H37Ra]
gi|148722277|gb|ABR06902.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224774046|dbj|BAH26852.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253319868|gb|ACT24471.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289417009|gb|EFD14249.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289421161|gb|EFD18362.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289438288|gb|EFD20781.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289539691|gb|EFD44269.1| Holliday junction resolvase [Mycobacterium tuberculosis K85]
gi|289539693|gb|EFD44271.1| predicted protein [Mycobacterium tuberculosis K85]
gi|289544477|gb|EFD48125.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289686874|gb|EFD54362.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289691760|gb|EFD59189.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289695259|gb|EFD62688.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289710230|gb|EFD74246.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|298495821|gb|EFI31115.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308214755|gb|EFO74154.1| hypothetical protein TMAG_02358 [Mycobacterium tuberculosis
SUMu001]
gi|308329948|gb|EFP18799.1| hypothetical protein TMCG_01799 [Mycobacterium tuberculosis
SUMu003]
gi|308337593|gb|EFP26444.1| hypothetical protein TMEG_03230 [Mycobacterium tuberculosis
SUMu005]
gi|308365195|gb|EFP54046.1| hypothetical protein TMLG_02282 [Mycobacterium tuberculosis
SUMu012]
gi|323718827|gb|EGB27983.1| hypothetical protein TMMG_02565 [Mycobacterium tuberculosis
CDC1551A]
gi|326904169|gb|EGE51102.1| hypothetical protein TBPG_02063 [Mycobacterium tuberculosis W-148]
gi|328458135|gb|AEB03558.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length = 170
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 54/130 (41%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID+G RIG+A SDP A P + R + + L + I+GLP +
Sbjct: 26 GIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLA 85
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G + R P DERLTTVSAQ+ L V ++ +D A
Sbjct: 86 DRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAA 145
Query: 141 AALILQEVLD 150
A ILQ LD
Sbjct: 146 AVAILQSWLD 155
>gi|240170725|ref|ZP_04749384.1| Holliday junction resolvase-like protein [Mycobacterium kansasii
ATCC 12478]
Length = 141
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 54/124 (43%)
Query: 28 RIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRV 87
RIG+A SDP A P + R + + L++ ++GLP + GP
Sbjct: 2 RIGVACSDPDGILATPVETVRRDRSGKHLRRLVALAAELQAVEVVVGLPRTLADRIGPAA 61
Query: 88 HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQE 147
+ R P DERLTTVSAQ+ L + K++ +D AA ILQ
Sbjct: 62 QDAIDLADALAQRIGPTPVRLVDERLTTVSAQRSLRQAGIRAKEQRAVIDQAAAVAILQT 121
Query: 148 VLDR 151
LD+
Sbjct: 122 WLDQ 125
>gi|227549180|ref|ZP_03979229.1| Holliday junction resolvase family protein [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078740|gb|EEI16703.1| Holliday junction resolvase family protein [Corynebacterium
lipophiloflavum DSM 44291]
Length = 164
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA----------LELLSFITTENIAA 70
+D+GT RIG+A+SD R A P + R VT +EL+ F +
Sbjct: 20 GLDVGTVRIGVAVSDRDARLAMPVETVDR--VTNFGDDDGADVDRLVELIGFYGAVEV-- 75
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLP ++ G+ V + R VP DERLTTV+A L VS K
Sbjct: 76 -VVGLPRDLKGNGSKSVKHAEDIAARLRAR-CGVPVRMGDERLTTVAATHALRASGVSAK 133
Query: 131 KRIQKVDSIAAALILQEVLD-RISFLESS 158
+ +D AA ILQ LD R++ L+ +
Sbjct: 134 AGRKVIDQAAAVEILQSWLDGRLTTLKET 162
>gi|312127726|ref|YP_003992600.1| holliday junction resolvase yqgf [Caldicellulosiruptor
hydrothermalis 108]
gi|311777745|gb|ADQ07231.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
hydrothermalis 108]
Length = 138
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +D+G R+G+AISDP + A P + + EL +I +IG PL+
Sbjct: 3 ILCLDMGNSRVGVAISDPLKITAQP-VMTIELRNKDLFEELDKIFQRYSIEKVVIGYPLS 61
Query: 79 -MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136
++ + + I + V V WDER +T + ++++ ++N RKK++ +
Sbjct: 62 KLHPDQKDEKLKKIDEISEKIKSRYNVEIVKWDERFSTKAVEKVINGELNWKRKKKV--I 119
Query: 137 DSIAAALILQEVLD 150
D +AA ILQ LD
Sbjct: 120 DKVAAVYILQGYLD 133
>gi|34763054|ref|ZP_00144028.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|237741672|ref|ZP_04572153.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
4_1_13]
gi|256844996|ref|ZP_05550454.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_36A2]
gi|294785717|ref|ZP_06751005.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
3_1_27]
gi|27887280|gb|EAA24377.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|229429320|gb|EEO39532.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
4_1_13]
gi|256718555|gb|EEU32110.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_36A2]
gi|294487431|gb|EFG34793.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
3_1_27]
Length = 138
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 8/134 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79
++D+G RIG+A SD A P + RKKV +++ ++ I EN I+ G+P ++
Sbjct: 6 ALDIGDVRIGVARSDIMGIIASPLETINRKKVK--SVKRIAEICKENDTNLIVVGIPKSL 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136
+G E + R ++ + + + DER +TV A IL ++N + K+++ V
Sbjct: 64 DGEEKRQAEKVREYIEKLKKEIENLEIIEIDERFSTVIADNILKELNKNGAIEKRKV--V 121
Query: 137 DSIAAALILQEVLD 150
D +AA++ILQ LD
Sbjct: 122 DKVAASIILQTYLD 135
>gi|325955520|ref|YP_004239180.1| Holliday junction resolvase [Weeksella virosa DSM 16922]
gi|323438138|gb|ADX68602.1| Holliday junction resolvase [Weeksella virosa DSM 16922]
Length = 132
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIGLP 76
++D G KR G+A++D + A P L K EL +F T E ++ +IGLP
Sbjct: 2 ALDFGEKRTGIAVTDELQIIATPVDTLETK-------ELFNFFETYFAKEKVSELVIGLP 54
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135
+ +G P + + F+ +P +E T+ A Q I + +K R K
Sbjct: 55 MKFSGEMNPIENEIQKFILKFKQSYPQIPIYRENEMFTSKMALQTQISGGMKKKDRQSKG 114
Query: 136 -VDSIAAALILQEVLDR 151
+D I+A +ILQ L +
Sbjct: 115 SLDKISATIILQSFLSK 131
>gi|220903317|ref|YP_002478629.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867616|gb|ACL47951.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 140
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF---ITTENIAAFIIGLPLN 78
+D G R GLA+SDP R A P + + T L L + I A ++GLPL
Sbjct: 1 MDYGLARTGLAVSDPDGRMAFPLATVRLQDYTDRKLFLAALAEKIIEAGAEAVVVGLPLT 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G E R V + R++ +PF + E L++ A L + + +KR +D
Sbjct: 61 QDGKESLTTRQVRN-VTQRLKRRIPLPFYYMVEELSSEEAWADLREAGLKMRKRKAVLDQ 119
Query: 139 IAAALILQEVL 149
AA IL L
Sbjct: 120 QAAVRILSSFL 130
>gi|229593127|ref|YP_002875246.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
SBW25]
gi|312963615|ref|ZP_07778096.1| putative Holliday junction resolvase [Pseudomonas fluorescens WH6]
gi|259495710|sp|C3K3K0|RUVX_PSEFS RecName: Full=Putative Holliday junction resolvase
gi|229364993|emb|CAY53130.1| putative holliday junction resolvase [Pseudomonas fluorescens
SBW25]
gi|311282124|gb|EFQ60724.1| putative Holliday junction resolvase [Pseudomonas fluorescens WH6]
Length = 145
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 2/141 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 6 ILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGIPDWNQVEALIKEWKPDAVVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVD 137
M+G+ F + R +PF DERLTT A+ D + R VD
Sbjct: 66 MDGTPSDMCLRAEKFARRLNGR-YNIPFYTHDERLTTFEAKGERRDRGGQKGSYRDNPVD 124
Query: 138 SIAAALILQEVLDRISFLESS 158
+IAAAL+LQ LD + L S
Sbjct: 125 AIAAALLLQGWLDENTALFES 145
>gi|197294553|ref|YP_001799094.1| Holliday junction resolvase-like protein [Candidatus Phytoplasma
australiense]
gi|171853880|emb|CAM11842.1| Putative holliday junction resolvase [Candidatus Phytoplasma
australiense]
Length = 140
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG K +G+A+S+ G + F + Q L I I I+G P +M
Sbjct: 2 GLDLGEKTLGIALSETGIIAQKLKTLFFPVNQYKQLIKPLKEIIDYYKIKTIILGYPKHM 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
N G + + F + V + WDERL+TV + +IL N +KK D I
Sbjct: 62 NNDIGIKAQISIKFKEILETNFPLVKVILWDERLSTVQSIKILRQNNKKKKKIKTLKDVI 121
Query: 140 AAALILQEVLD 150
AA +ILQ LD
Sbjct: 122 AATIILQNYLD 132
>gi|307152105|ref|YP_003887489.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7822]
gi|306982333|gb|ADN14214.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7822]
Length = 142
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G +R+G+A D A +VR +L + ++GLP MN
Sbjct: 8 GLDVGKRRVGVAGCDGLGLIATGLTTIVRSSFVADVEQLKQLVQQREAKILVVGLPYCMN 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G G + + + I + + +P + DERLT+ A++ L + +D A
Sbjct: 68 GDIGSQARQVQNYATR-IGKALQLPIEYVDERLTSYQAEEELKAQKRFSTRNKGLIDRQA 126
Query: 141 AALILQEVLD 150
AA+ILQ+ LD
Sbjct: 127 AAIILQQWLD 136
>gi|68536114|ref|YP_250819.1| putative Hollyday junction resolvase [Corynebacterium jeikeium
K411]
gi|146325565|sp|Q4JVF6|RUVX_CORJK RecName: Full=Putative Holliday junction resolvase
gi|68263713|emb|CAI37201.1| putative Hollyday junction resolvase [Corynebacterium jeikeium
K411]
Length = 155
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAAFIIGLPLNM 79
+D+GT RIG+AISDP A P ++ ++ + I +N + ++GLP+ +
Sbjct: 19 GLDVGTVRIGVAISDPDCILATPVE-TIQATADDADVQRVVEICRDNFVVEIVVGLPVAL 77
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G+ + F + + +P DER++T++A V+ KK +K+D
Sbjct: 78 RGNHTQSTLNAEEFARLVKEELPDIPVRMVDERMSTMAATHAFHASGVNSKKGRKKIDQA 137
Query: 140 AAALILQEVLD 150
AA ILQ LD
Sbjct: 138 AAVHILQGWLD 148
>gi|291615388|ref|YP_003525545.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1]
gi|291585500|gb|ADE13158.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1]
Length = 148
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTKRIG+A+ + A P + +K + + AA ++GLP N +
Sbjct: 12 AFDFGTKRIGVAVGNTVSATARPLTTIGAEKNDLRFAAIAELLKEWQPAALVVGLPCNDD 71
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ +R F N + + +P + DER T+ +A L + +K+ +D A
Sbjct: 72 GTPHEMTALSRRFA-NRLKGRFNLPTLLIDERYTSAAASSALDKEGIHGRKQKNLIDQYA 130
Query: 141 AALILQEVLDRIS 153
A ILQ D S
Sbjct: 131 AQQILQAYFDEPS 143
>gi|194246642|ref|YP_002004281.1| Putative Holliday junction resolvase [Candidatus Phytoplasma mali]
gi|193806999|emb|CAP18434.1| Putative Holliday junction resolvase [Candidatus Phytoplasma mali]
Length = 145
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 2/138 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
P +DLG K +G++IS+ G + + L+ L I +NI I+GLP
Sbjct: 6 PYLGLDLGEKTLGISISEAGFFSVNFKTLNFPNHQYNYLLKPLKILIIQKNIKTIILGLP 65
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+MN G + + F + D K+ V + WDERL+T + L + N ++KK Q
Sbjct: 66 KHMNNDLGVKSLISINFKKRLEDYLKLDVKIILWDERLSTKQSLIFLKNNNKNKKKIKQL 125
Query: 136 VDSIAAALILQEVLDRIS 153
D +AA ILQ LD S
Sbjct: 126 KDEVAAMFILQNFLDYQS 143
>gi|301154797|emb|CBW14260.1| predicted Holliday junction resolvase [Haemophilus parainfluenzae
T3T1]
Length = 139
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 31/148 (20%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
+ D GTK IG A+ + +T TA L +F + I +
Sbjct: 7 AFDFGTKSIGCAVG---------------QSITGTAQALPAFKAQDGIPNWDAIEKCLKD 51
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
++GLPLNM+G+E + F N ++ + + DERLTTVSA+ +
Sbjct: 52 WKPDVIVVGLPLNMDGTEQDLTLRAKKFA-NRLNGRFGIKVELQDERLTTVSARDEIFQR 110
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
R KVD I+A LIL+ + S
Sbjct: 111 GGYRALNKGKVDGISACLILESWFENYS 138
>gi|299135876|ref|ZP_07029060.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX8]
gi|298602000|gb|EFI58154.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX8]
Length = 164
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G +RIGLAI+DP A P L R + + FI + ++G PL+
Sbjct: 7 ILALDVGDRRIGLAITDPLGLTAQPLFTLHRTSLRADLKSVARFIRQHKVTTVVVGNPLH 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-------- 130
+GS P+ AF + + + DERLTT+ A +L S +
Sbjct: 67 ADGSPSPQAAKALAFAAAVREEHPTLAHHLLDERLTTLEAHALLDAAGHSARTAGRSHGK 126
Query: 131 --KRIQKVDSIAAALILQEVLDRISFLESSK 159
R +D +AA L+L+ SFL K
Sbjct: 127 TIDRKDLIDQVAATLLLE------SFLSGDK 151
>gi|260913265|ref|ZP_05919747.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
gi|260632852|gb|EEX51021.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
Length = 140
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GTK IG A+ R A P + + + ++GLPLN
Sbjct: 5 VLAFDFGTKSIGCAVGQSITRTAQALPAFKAQDGIPNWDAIEKCLNEWRPDLVVVGLPLN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E R F N ++ + V DERLTT A+ + + + KVD
Sbjct: 65 MDGTEQELTTRARKFA-NRLNGRFGVQVELQDERLTTTEARAEIFERGGYKALNKSKVDG 123
Query: 139 IAAALILQEVLDR 151
I+A LIL+ ++
Sbjct: 124 ISACLILESWFEK 136
>gi|52424316|ref|YP_087453.1| Holliday junction resolvase-like protein [Mannheimia
succiniciproducens MBEL55E]
gi|62900960|sp|Q65VZ2|RUVX_MANSM RecName: Full=Putative Holliday junction resolvase
gi|52306368|gb|AAU36868.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 140
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 61/148 (41%), Gaps = 31/148 (20%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
+ D GTK IG A+ + +T TA L +F I +
Sbjct: 9 AFDFGTKSIGCAVG---------------QSITGTAQALPAFKAQNGIPNWDSIEKCLKE 53
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
++GLPLNM+G+E R F N + + V DERLTT A+ +
Sbjct: 54 WKPDILVVGLPLNMDGTEQEFTSRARKFA-NRLHGRFGVKVELQDERLTTTEARTEIFQR 112
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ KVD I+AALIL+ +R S
Sbjct: 113 GGYKALNKSKVDGISAALILESWFERHS 140
>gi|260599276|ref|YP_003211847.1| Holliday junction resolvase-like protein [Cronobacter turicensis
z3032]
gi|260218453|emb|CBA33583.1| Putative Holliday junction resolvase [Cronobacter turicensis z3032]
Length = 138
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 11/136 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ----TALE-LLSFITTENIAAFIIGL 75
+ D GTK IG+AI R A RP K T +E LL +++ I+GL
Sbjct: 7 AFDFGTKSIGVAIGQ--RVTATARPLNAIKAQNGNPDWTIIERLLKEWQPDDV---IVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N + + + DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTSRARTFA-NRLHGRFGIKVTLHDERLSTVEARAGLFERGGFRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVVILESYFEQ 136
>gi|289450300|ref|YP_003474401.1| YqgF family RNAse H domain-containing protein [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289184847|gb|ADC91272.1| RNAse H domain protein, YqgF family [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 140
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPLN 78
ID G RIG+A+SD A + ++ T+ + +AA +IGLP
Sbjct: 6 GIDYGQARIGVAVSDALGITARGIETICWNGEEFTKPVNRICELAKQNGVAAIVIGLPRR 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G G R +++ + ++ DER TTV A ++L + V ++++ VD
Sbjct: 66 TDGKIGVSEEKARQL-GDLLQELTGLNIIWRDERYTTVLAHRVLNESTVKKRQKRSVVDQ 124
Query: 139 IAAALILQEVLD 150
+AA +ILQ+ L+
Sbjct: 125 VAAEIILQDFLE 136
>gi|119358338|ref|YP_912982.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides DSM
266]
gi|119355687|gb|ABL66558.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides DSM
266]
Length = 142
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN-IAA 70
L + I +ID GTKRIGLA +DP + FA R T LL + N I
Sbjct: 2 GLTEKKRILAIDYGTKRIGLAQTDPLQLFASAVGTFER----TTLFALLEKMAANNEIEK 57
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++G PL+ + S F+ + +P DE ++ A QILI +K
Sbjct: 58 ILVGYPLSSDNSPNAMTAVVDRFIMELQLAFPSLPVETADEHHSSRDAHQILIASGTRKK 117
Query: 131 KRIQK--VDSIAAALILQEVLD 150
R +K +DS AA +IL++ L+
Sbjct: 118 ARKEKGRIDSAAACVILRDYLE 139
>gi|227115172|ref|ZP_03828828.1| Holliday junction resolvase-like protein [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 139
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 31/150 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
++ I + D GTK IG+AI +++T TA L SF E I +
Sbjct: 3 SRTILAFDFGTKSIGVAIG---------------QEITGTARALTSFKAQEGIPDWQKVE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E P R F N + + + DERL+TV A+
Sbjct: 48 KLLSEWQPDLVVVGLPLNMDGTEQPLTARARKFA-NRLHGRFGIAIELHDERLSTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L + + VD+ +A +IL+ +
Sbjct: 107 DLFERGGFKALDKGSVDAASAVIILESWFE 136
>gi|312135027|ref|YP_004002365.1| holliday junction resolvase yqgf [Caldicellulosiruptor owensensis
OL]
gi|311775078|gb|ADQ04565.1| Holliday junction resolvase YqgF [Caldicellulosiruptor owensensis
OL]
Length = 138
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 13/138 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL- 77
I +D+G R+G+AISDP + A P + K EL +I +IG PL
Sbjct: 3 ILCLDIGNSRVGVAISDPLKITAQP-VMTIELKNKDLFDELDKIFQRYSIEKVVIGYPLS 61
Query: 78 ----NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKR 132
++ + ++ + I + V V WDER +T + ++++ ++N RKK+
Sbjct: 62 KLHPDLKDEKLKKIDE----ISEKIGSRYNVEIVKWDERFSTKAVERVMNEELNWKRKKK 117
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA ILQ LD
Sbjct: 118 V--IDKVAAVYILQGYLD 133
>gi|123966025|ref|YP_001011106.1| endonuclease [Prochlorococcus marinus str. MIT 9515]
gi|167012749|sp|A2BW38|RUVX_PROM5 RecName: Full=Putative Holliday junction resolvase
gi|123200391|gb|ABM71999.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. MIT 9515]
Length = 151
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 10 VKSLKP-NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+K KP ++ I S+D+GTKRIGLA D + P L R+K + S I N+
Sbjct: 1 MKYSKPKSKSILSLDIGTKRIGLAYCDSLFITVNILPALRREKNKNEFKTIKSHIKKLNL 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
FI+GLPL+ G + + + + + ++ +PF F +E +T ++
Sbjct: 61 TGFIVGLPLDDKGRMTSQAFDCKTYGEYLFN-ELKLPFSFVNEHSSTWESENRF----GV 115
Query: 129 RKKRIQKVDSIAAALILQE 147
+K + +DS++A +IL++
Sbjct: 116 KKDKSGLIDSLSAKVILEQ 134
>gi|271502145|ref|YP_003335171.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586]
gi|270345700|gb|ACZ78465.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586]
Length = 143
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GT+ IG+AI A P L + ++ + A I+GL
Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGIPDWQKVEKLLNEWQPALIIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + R V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQPLTARARKFSQRLQGR-FGVTVELHDERLSTVEARADLFERGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDAASAVIILESWFEQ 137
>gi|255037798|ref|YP_003088419.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053]
gi|254950554|gb|ACT95254.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053]
Length = 137
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 11/139 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID G KR G+A++DP + A + ++T L + +E + AF++G+P ++
Sbjct: 6 AIDYGAKRSGIAVTDPLKIIATALDTVPTHQLTDF---LKKYTLSEQVEAFVVGMPKKLD 62
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138
++ AFV ++ + DER T+ A Q +I + R K +D
Sbjct: 63 NTDSENAARVTAFVKSLQKAFPEISVHLHDERFTSSMALQSMIASGSKKSDRRDKGNIDK 122
Query: 139 IAAALILQEVLDRISFLES 157
++A +ILQ SF+ES
Sbjct: 123 VSATIILQ------SFMES 135
>gi|157374375|ref|YP_001472975.1| Holliday junction resolvase-like protein [Shewanella sediminis
HAW-EB3]
gi|157316749|gb|ABV35847.1| putative Holliday junction resolvase [Shewanella sediminis HAW-EB3]
Length = 139
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK IG+AI A+P + E+ I ++GLPLN
Sbjct: 6 VLGFDYGTKSIGVAIGQSLTGSANPLLSINAVDGIPKWEEIGMLIEEWKPDLVVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSE + F N I+ + V DERLTT A+ L +M + +VD+
Sbjct: 66 MDGSEQEMTQRAKKFA-NRINGRFGVKIATQDERLTTADAKARLFEMGGYKALTKGQVDA 124
Query: 139 IAAALILQEVLDRI 152
++A LI++ + +
Sbjct: 125 MSAVLIIESYFENL 138
>gi|114564013|ref|YP_751527.1| Holliday junction resolvase-like protein [Shewanella frigidimarina
NCIMB 400]
gi|114335306|gb|ABI72688.1| Holliday junction resolvase YqgF [Shewanella frigidimarina NCIMB
400]
Length = 139
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 31/149 (20%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF----- 71
Q + D GTK IG+AI + +T +A LLS + I +
Sbjct: 4 QTVLGFDYGTKSIGVAIG---------------QAITASATPLLSIKAVDGIPNWDDIDK 48
Query: 72 ----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
++GLPLNM+G+E R F N I+ + V DERLTT A+
Sbjct: 49 LLKEWQPDLVVVGLPLNMDGTEQEMTQRARKFA-NRINGRFGVKIATQDERLTTADAKAR 107
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L ++ + +VD+++A LI++ +
Sbjct: 108 LFELGGFKALTKGQVDAVSAVLIIESYFE 136
>gi|325577677|ref|ZP_08147952.1| crossover junction endodeoxyribonuclease [Haemophilus
parainfluenzae ATCC 33392]
gi|325160422|gb|EGC72548.1| crossover junction endodeoxyribonuclease [Haemophilus
parainfluenzae ATCC 33392]
Length = 139
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 31/148 (20%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
+ D GTK IG A+ + +T TA L +F + I +
Sbjct: 7 AFDFGTKSIGCAVG---------------QSITGTAQALPAFKAQDGIPNWDAIEKCLKD 51
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
++GLPLNM+G+E + F N ++ + + DERLTTVSA+ +
Sbjct: 52 WKPDVIVVGLPLNMDGTEQDLTLRAKKFA-NRLNGRFGIKVELQDERLTTVSARDEIFQR 110
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
R KVD I+A LIL+ + S
Sbjct: 111 GGYRALNKGKVDGISACLILESWFESYS 138
>gi|218440039|ref|YP_002378368.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 7424]
gi|226725509|sp|B7KBE4|RUVX_CYAP7 RecName: Full=Putative Holliday junction resolvase
gi|218172767|gb|ACK71500.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7424]
Length = 151
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KR+G+A D A + R + + +I ++GLP +MN
Sbjct: 9 GLDVGKKRVGVAGCDGLGLIATGLTTIERTHFIADVEKFKQLVEERDIKVLVVGLPYSMN 68
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ G + + + + + + +P + DERLT+ A++ L VD A
Sbjct: 69 GTLGSQAKQVQNYATRLA-KALQLPLEYVDERLTSYEAEEQLKAQKRFSTYNKGLVDRQA 127
Query: 141 AALILQEVLDR 151
AA+ILQ+ LD+
Sbjct: 128 AAIILQQWLDQ 138
>gi|254495884|ref|ZP_05108793.1| YqgF [Legionella drancourtii LLAP12]
gi|254354866|gb|EET13492.1| YqgF [Legionella drancourtii LLAP12]
Length = 138
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ D G KRIG+A+ A P + + + + A I+G
Sbjct: 2 PDGVYLGFDFGYKRIGVAVGQRLTCSASPLATISAQTGVPDWTVVAKVVAQWTPQALIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+P ++G E + R F + ++ +P DERLTTV A+ L RK +
Sbjct: 62 IPTCIDGREQYTTSAARRFAKEL-RKRFTLPVHLVDERLTTVEARGHLFAQGGYRKIKQT 120
Query: 135 KVDSIAAALILQEVL 149
+VDSIAA +IL++ L
Sbjct: 121 EVDSIAACVILEQWL 135
>gi|260903834|ref|ZP_05912156.1| Holliday junction resolvase-like protein [Brevibacterium linens
BL2]
Length = 150
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+D+G+ RIG+A SDP A P +VR+ AL+ L I E +IG P ++
Sbjct: 2 GLDIGSVRIGVAASDPDGILATPL-TVVRRTDEPAALKTLREIIDEYEPIELLIGDPKSL 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS + F I P DER TTV A L + ++R + VD+
Sbjct: 61 DGSARAAAATALEFAKR-ISAATATPIRLVDERFTTVEAHHALAAAGKNSRQRREIVDAQ 119
Query: 140 AAALILQEVLD 150
AA +ILQ L+
Sbjct: 120 AAVIILQNALE 130
>gi|307132696|ref|YP_003884712.1| putative Holliday junction resolvase [Dickeya dadantii 3937]
gi|306530225|gb|ADN00156.1| predicted Holliday junction resolvase [Dickeya dadantii 3937]
Length = 143
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GT+ IG+AI A P L + ++ + A I+GL
Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGVPDWQKVEKLLNEWQPALVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + R V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQPLTARARKFSQRLHGR-FGVKVDLHDERLSTVEARADLFERGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDAASAVIILESWFEQ 137
>gi|170725697|ref|YP_001759723.1| Holliday junction resolvase-like protein [Shewanella woodyi ATCC
51908]
gi|169811044|gb|ACA85628.1| Holliday junction resolvase YqgF [Shewanella woodyi ATCC 51908]
Length = 139
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + D GTK IG+AI A+P + E+ I ++GL
Sbjct: 3 SQTVLGFDYGTKSIGIAIGQSLTGSANPLLSIKAVDGIPKWEEIGMLIEEWRPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE + F N I + V DERLTT A+ L +M + +
Sbjct: 63 PLNMDGSEQEMTQRAKKFA-NRISGRFGVKVETQDERLTTADAKTRLFEMGGYKALTKGQ 121
Query: 136 VDSIAAALILQEVLDRI 152
VD+++A LI++ + +
Sbjct: 122 VDAMSAVLIVESYFESL 138
>gi|170692129|ref|ZP_02883293.1| Holliday junction resolvase YqgF [Burkholderia graminis C4D1M]
gi|170143413|gb|EDT11577.1| Holliday junction resolvase YqgF [Burkholderia graminis C4D1M]
Length = 146
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + R A P + + E+ I A ++GLP++ +
Sbjct: 13 AFDYGEKRIGVAVGNSLTRSARPLVIVQNRSREYRFAEVGKLIAEWKPDALVVGLPMHPD 72
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ + F N ++ + +P + DER ++V A+ + K R +D+ A
Sbjct: 73 GTPHEMTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAEAT----TRANKGRADMLDAEA 127
Query: 141 AALILQEVLDRIS 153
A++ILQ+ LD +S
Sbjct: 128 ASIILQQYLDGLS 140
>gi|206602306|gb|EDZ38787.1| putative Holliday junction resolvase YqgF [Leptospirillum sp. Group
II '5-way CG']
Length = 171
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 18/150 (12%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHP-------RPFLVRKKVTQTALELLSFITTE-NIA 69
P+ ID G RIGLAISD RF+ P F+ ++ + + L I TE I
Sbjct: 17 PLLGIDWGEARIGLAISDNSLRFSEPLGVIENRCSFVPPLRIPSKSGDALKRICTEKKIR 76
Query: 70 AFIIGLPL-NMNGSEGPRVHSTRAFVH--NMIDRKVYVPFVFWDERLTT--VSAQQILID 124
I G+P +++G P+ + FV +I P WDE LT+ + +++I
Sbjct: 77 GIIFGVPWYHLSGDPNPK---SEIFVEYARLIRSLTGCPVFLWDEGLTSDVLKSERISGK 133
Query: 125 MNVSR--KKRIQKVDSIAAALILQEVLDRI 152
SR K+ +D +A LILQ LD
Sbjct: 134 RKYSRSPKRSRDPIDHYSATLILQSFLDEC 163
>gi|19552843|ref|NP_600845.1| Holliday junction resolvase-like protein [Corynebacterium
glutamicum ATCC 13032]
gi|62390514|ref|YP_225916.1| Holliday junction resolvase-like protein [Corynebacterium
glutamicum ATCC 13032]
gi|32130038|sp|Q8NQ23|RUVX_CORGL RecName: Full=Putative Holliday junction resolvase
gi|21324400|dbj|BAB99024.1| Predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Corynebacterium glutamicum ATCC 13032]
gi|41325851|emb|CAF21640.1| Predicted endonuclease involved in recombination [Corynebacterium
glutamicum ATCC 13032]
Length = 182
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 66/150 (44%), Gaps = 18/150 (12%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---------LLSFITTENIAAF 71
+D+GT RIG+A SD + A P + R +T + L++ + N
Sbjct: 20 GLDVGTVRIGVAASDRDAKLAMPVETVPR----ETGFKGPDLADIDRLVAIVEEYNAVEV 75
Query: 72 IIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I+GLP ++ G+ V + + + +P DERLTTV A Q L V
Sbjct: 76 IVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRASGV 135
Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLE 156
S K + +D AA ILQ LD R LE
Sbjct: 136 SEKAGRKVIDQAAAVEILQTWLDARTRALE 165
>gi|145295753|ref|YP_001138574.1| Holliday junction resolvase-like protein [Corynebacterium
glutamicum R]
gi|140845673|dbj|BAF54672.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 182
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 66/150 (44%), Gaps = 18/150 (12%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---------LLSFITTENIAAF 71
+D+GT RIG+A SD + A P + R +T + L++ + N
Sbjct: 20 GLDVGTVRIGVAASDRDAKLAMPVETVPR----ETGFKGPDLADIDRLVAIVEEYNAVEV 75
Query: 72 IIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I+GLP ++ G+ V + + + +P DERLTTV A Q L V
Sbjct: 76 IVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRASGV 135
Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLE 156
S K + +D AA ILQ LD R LE
Sbjct: 136 SEKAGRKVIDQAAAVEILQTWLDARTRALE 165
>gi|47459273|ref|YP_016135.1| endonuclease [Mycoplasma mobile 163K]
gi|62900979|sp|Q6KHK6|RUVX_MYCMO RecName: Full=Putative Holliday junction resolvase
gi|47458602|gb|AAT27924.1| hypothetical endonuclease [Mycoplasma mobile 163K]
Length = 144
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 11/135 (8%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGLPLNM 79
IDLG R G AISD + + P ++K LE+ + I +IGLP+ +
Sbjct: 6 IDLGKIRTGFAISDDSNKISLPLKTFIQKNANFNNIILEIKKILLEYQIDTIVIGLPIKI 65
Query: 80 NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
N + ST FV N +++++ +P F +E ++V A + +M ++K I V
Sbjct: 66 NNE---KTKST-IFVENFKKHLEKEINLPIFFVNEYNSSVLANLSINEMKSKKRKTI--V 119
Query: 137 DSIAAALILQEVLDR 151
D I+A +IL + L+
Sbjct: 120 DKISAQIILNDFLNN 134
>gi|253996010|ref|YP_003048074.1| Holliday junction resolvase-like protein [Methylotenera mobilis
JLW8]
gi|253982689|gb|ACT47547.1| Holliday junction resolvase YqgF [Methylotenera mobilis JLW8]
Length = 156
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
+ + D G +RIG+A+ + A P + + + + ++++ + +E ++GLP
Sbjct: 20 VLAFDFGERRIGIAVGE--HLLASANPLMTIDNESNEIRFQIITKLVSEWQPRLLVVGLP 77
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+++GSE + F + R +P DER ++ A Q+L + + + + + +
Sbjct: 78 LSLDGSEHGVTQLCKKFARRLNGR-FNLPVALIDERYSSAEASQLLNEAGIRGRAQKEML 136
Query: 137 DSIAAALILQEVLDRIS 153
D +AA ILQ D+ S
Sbjct: 137 DQVAAQTILQSYFDQAS 153
>gi|302398811|gb|ADL36700.1| GRF domain class transcription factor [Malus x domestica]
Length = 170
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 79/154 (51%), Gaps = 6/154 (3%)
Query: 5 LIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLS 61
L +DL+K+ + + +D+G K +G+A+SD + A P L+RKK + A + S
Sbjct: 9 LFQDLLKANTLERGRLLGLDVGDKYVGVAVSDLHNKIASPLSVLLRKKSNIGLMAADFQS 68
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID-RKVY-VPFVFWDERLTTVSAQ 119
I+ ++ FI+G P + P + F+ ++ RK+ + + +WDE T+ + +
Sbjct: 69 LISELSLVGFIVGYPFDRQKGT-PDAVQVKLFIDDLSKTRKLEGLKYTYWDEGFTSKNVE 127
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+L +N+ + +D AA ILQ LD ++
Sbjct: 128 LLLKPLNLPPVQSKTIMDKFAAVGILQGYLDYVN 161
>gi|315604257|ref|ZP_07879323.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313963|gb|EFU62014.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 162
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+GT R+G++ DP P L+R + L + + I+GLP ++
Sbjct: 10 GVDVGTVRVGVSRCDPDGILTMPVETLLRASDSADLRRLEGIVRAHDALEVIVGLPRHLR 69
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
G EG R + + K +P V DERL++ A L V + +D
Sbjct: 70 GGEGVSAKGARKYARRL---KTLIPSVRVALVDERLSSNQAHARLRASGVPEHEHRSVID 126
Query: 138 SIAAALILQEVLD 150
+AA +IL++ L+
Sbjct: 127 QVAAQIILEQALE 139
>gi|296270019|ref|YP_003652651.1| Holliday junction resolvase YqgF [Thermobispora bispora DSM 43833]
gi|296092806|gb|ADG88758.1| Holliday junction resolvase YqgF [Thermobispora bispora DSM 43833]
Length = 163
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFIIGLPLNM 79
+D+G+ RIG+A SDP A P + R + L+ ++ I E+ A ++GLP ++
Sbjct: 8 GVDVGSVRIGVARSDPSGVLAVPVETVRRGR---DDLDRIAEIAAEHEAIEVVVGLPTSL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G E + R + + R +P DERLTTV+AQ+ L + +++ +D
Sbjct: 65 SGRESHAAKAAREYAARLAARLAPIPVRLVDERLTTVTAQRRLRSSGIRARQQRDIIDQA 124
Query: 140 AAALILQEVLD 150
AA +LQ LD
Sbjct: 125 AAVELLQAALD 135
>gi|332670519|ref|YP_004453527.1| Holliday junction resolvase YqgF [Cellulomonas fimi ATCC 484]
gi|332339557|gb|AEE46140.1| Holliday junction resolvase YqgF [Cellulomonas fimi ATCC 484]
Length = 186
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR-------KKVTQTALELLSFITTENIAAFII 73
++D+G+ R+GLA SDP A P L R ++V ++ A +
Sbjct: 13 AVDVGSVRVGLAASDPDGLVATPVATLARDTPGRKERRVPTDVAAIVHEAGERGAAVVYV 72
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +++G+EG + RA+ + VP DER++TV+A Q L S ++
Sbjct: 73 GLPRHLSGAEGAASAAARAYSVGLAQAVAPVPVRLVDERMSTVTAHQALQASGRSGRRHR 132
Query: 134 QKVDSIAAALILQEVLD 150
Q VD AA +ILQ LD
Sbjct: 133 QVVDQAAAVVILQYALD 149
>gi|330812357|ref|YP_004356819.1| holliday junction resolvase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|32130065|sp|Q9F4I8|RUVX_PSEFL RecName: Full=Putative Holliday junction resolvase
gi|10442817|gb|AAG15556.1| hypothetical protein [Pseudomonas fluorescens]
gi|327380465|gb|AEA71815.1| putative holliday junction resolvase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 145
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D GTK+IG+A+ A L + ++ + I A ++GLPLNM+
Sbjct: 8 GFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLNMD 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDSI 139
G+ F + R +PF DERLTT A+ + L+ R VD+I
Sbjct: 68 GTPSDMCLRAEKFARRLNGR-YNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVDAI 126
Query: 140 AAALILQEVLD 150
AAAL+LQ LD
Sbjct: 127 AAALLLQGWLD 137
>gi|251788140|ref|YP_003002861.1| Holliday junction resolvase-like protein [Dickeya zeae Ech1591]
gi|247536761|gb|ACT05382.1| Holliday junction resolvase YqgF [Dickeya zeae Ech1591]
Length = 143
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GT+ IG+AI A P L + ++ + A I+GL
Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGIPDWQKVEKLLNEWQPALVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + R V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQPLTARARKFSQRLHGR-FGVNVELHDERLSTVEARADLFERGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDAASAVIILESWFEQ 137
>gi|254447654|ref|ZP_05061120.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
HTCC5015]
gi|198262997|gb|EDY87276.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
HTCC5015]
Length = 141
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID G KRIG+A A P L L + A ++GLPLN +
Sbjct: 6 GIDFGLKRIGIATGQTLTCSATPLTTLPNHAEHTNWDGLDKVLKDWKPDAIVLGLPLNKD 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS----RKKRIQKV 136
GS+ R F + + + P + DER ++ A+Q L S RK + + +
Sbjct: 66 GSDHALTKQVRQF-RDTLGQHFSGPIHWQDERASSREAEQSLTSQRASGDLRRKVKKEDI 124
Query: 137 DSIAAALILQEVLDR 151
D +AAALILQ L++
Sbjct: 125 DQLAAALILQRWLNK 139
>gi|255325070|ref|ZP_05366176.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
gi|255297635|gb|EET76946.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
Length = 183
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++D+GT RIG+A+S+ A P R + + +L I + + ++GL
Sbjct: 21 ALDVGTVRIGVAVSNREATLATPVETVRRETGFKDRDKGDIDRILELIDSYDAVEVVVGL 80
Query: 76 PLNMNGSEGPRVHSTR--AF-VHNMIDR-----KVYVPFVFWDERLTTVSAQQILIDMNV 127
P ++ G+ V + AF + ++R KV P DERLTTV+A L V
Sbjct: 81 PRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLADERLTTVAATTALRASGV 140
Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLES 157
S KK + +D AA ILQ LD R S L S
Sbjct: 141 SEKKGRKVIDQAAAVEILQTWLDGRASALRS 171
>gi|303326141|ref|ZP_07356584.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3]
gi|302864057|gb|EFL86988.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3]
Length = 142
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP------RPFLVRKKVTQTALELLSFITTENIAAFIIG 74
ID G R GLA+SDP R A P + RK L + IT E A ++G
Sbjct: 2 GIDYGLARTGLAVSDPEGRLAFPLVTLRLEEYPNRKDFLAA---LAARITAEEAEAVVMG 58
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPL +G++ R V + R+V +P + E L++ A L D ++ +KR
Sbjct: 59 LPLLDDGTDSLTTRQVRN-VTERLKRRVDLPVFYMPELLSSEEAWSDLRDAGLTARKRKA 117
Query: 135 KVDSIAAALILQEVL 149
+D AA IL L
Sbjct: 118 VLDQQAAVRILASFL 132
>gi|319638570|ref|ZP_07993332.1| Holliday junction resolvase [Neisseria mucosa C102]
gi|317400319|gb|EFV80978.1| Holliday junction resolvase [Neisseria mucosa C102]
Length = 151
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A + +HP + + + + F++G
Sbjct: 5 PKGTVLAFDFGEARIGVAQGEAELGMSHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
LP + +G+E +R F + R +P V+W DER++++ A+ +L + V +K+
Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLP-VYWVDERMSSLYAESLLAEAQVFGRKQK 122
Query: 134 QKVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 123 SVLDQVAAQAILQGFFE 139
>gi|255066197|ref|ZP_05318052.1| putative Holliday junction resolvase [Neisseria sicca ATCC 29256]
gi|255049407|gb|EET44871.1| putative Holliday junction resolvase [Neisseria sicca ATCC 29256]
Length = 155
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A D +HP + + + I ++G
Sbjct: 5 PAGTVLAFDFGETRIGVAQGDAELGLSHPLATVTGNSNDEKFNAIAKLIREWQPKHLVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPTHADGTEHELTRLSRKFGRRLHGR-FNLPIYWVDERMSSLYAESLLAEAQVFGRKQKA 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ D
Sbjct: 124 VLDQVAAQAILQGFFD 139
>gi|169629934|ref|YP_001703583.1| putative Holliday junction resolvase [Mycobacterium abscessus ATCC
19977]
gi|226731629|sp|B1MCF8|RUVX_MYCA9 RecName: Full=Putative Holliday junction resolvase
gi|169241901|emb|CAM62929.1| Putative Holliday junction resolvase [Mycobacterium abscessus]
Length = 166
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPLNM 79
+D+GT RIG++ SDP A P + R + ++ + E ++ GLP N+
Sbjct: 24 GVDVGTVRIGISSSDPDGILATPVETVSRDAKEDSDFRRIAELVEEMSVVEVVVGLPRNL 83
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G F + +R VP DER TT +AQ+ L + V +++ +D
Sbjct: 84 REGTGSSARDAAGFARELGERIAPVPVRLVDERFTTTTAQRSLREAGVRSRQQRGIIDQA 143
Query: 140 AAALILQEVLD 150
AA ILQ+ L+
Sbjct: 144 AAVAILQDWLE 154
>gi|311739531|ref|ZP_07713366.1| Holliday junction resolvase family protein [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305347|gb|EFQ81415.1| Holliday junction resolvase family protein [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 183
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP-----RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++D+GT RIG+A+S+ A P R + + +L I + + ++GL
Sbjct: 21 ALDVGTVRIGVAVSNREATLATPVETVHRETGFKDRDKGDIDRILELIDSYDAVEVVVGL 80
Query: 76 PLNMNGSEGPRVHSTR--AF-VHNMIDR-----KVYVPFVFWDERLTTVSAQQILIDMNV 127
P ++ G+ V + AF + ++R KV P DERLTTV+A L V
Sbjct: 81 PRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLADERLTTVAATTALRASGV 140
Query: 128 SRKKRIQKVDSIAAALILQEVLD-RISFLES 157
S KK + +D AA ILQ LD R S L S
Sbjct: 141 SEKKGRKVIDQAAAVEILQTWLDGRASALRS 171
>gi|283788529|ref|YP_003368394.1| holliday junction resolvase [Citrobacter rodentium ICC168]
gi|282951983|emb|CBG91710.1| putative holliday junction resolvase [Citrobacter rodentium ICC168]
Length = 122
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
I+GLPLNM+G+E P R F N I + V DERL+TV A+ L + R
Sbjct: 42 IVGLPLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRAL 100
Query: 132 RIQKVDSIAAALILQEVLDR 151
K+DS +A +IL+ ++
Sbjct: 101 NKGKIDSASAVIILESYFEQ 120
>gi|325265855|ref|ZP_08132541.1| crossover junction endodeoxyribonuclease [Kingella denitrificans
ATCC 33394]
gi|324982493|gb|EGC18119.1| crossover junction endodeoxyribonuclease [Kingella denitrificans
ATCC 33394]
Length = 159
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 15 PNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
P Q + D G RIG+A + AHP + + ++ I ++
Sbjct: 5 PKQGCCLAFDFGKVRIGVAQGESSLHIAHPICTVSGAGNDEKFAKIAQLIKEWQPEYLVV 64
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKR 132
GLP +++G+E R F + R + V+W DERL++V A+++L + V KK+
Sbjct: 65 GLPTHIDGTEHEMTRLARQFGRRLHGR--FGKPVYWVDERLSSVYAEELLREAAVFGKKQ 122
Query: 133 IQKVDSIAAALILQEVLD 150
+D +AA IL D
Sbjct: 123 KPVLDQVAAQAILHYFFD 140
>gi|312890474|ref|ZP_07750010.1| Holliday junction resolvase YqgF [Mucilaginibacter paludis DSM
18603]
gi|311296932|gb|EFQ74065.1| Holliday junction resolvase YqgF [Mucilaginibacter paludis DSM
18603]
Length = 151
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 17/143 (11%)
Query: 19 IASIDLGTKRIGLAISDP------GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
I + D GTKRIG+A++DP G HP+ + L + + FI
Sbjct: 17 IMAFDYGTKRIGIAVTDPLQIIATGLDTVHPKDIVEY---------LKKYFVLNPVERFI 67
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P M+ + + FV + +P DER T+ A ++ + + R
Sbjct: 68 VGEPKQMDNTASQSAPHVKGFVTILKKNFPDIPVEMLDERFTSKMASAVIAQSGMKKMDR 127
Query: 133 IQK--VDSIAAALILQEVLDRIS 153
K VD+I+A +ILQ ++R +
Sbjct: 128 QNKALVDTISATIILQSWMERFN 150
>gi|332535114|ref|ZP_08410924.1| putative holliday junction resolvase [Pseudoalteromonas
haloplanktis ANT/505]
gi|332035432|gb|EGI71930.1| putative holliday junction resolvase [Pseudoalteromonas
haloplanktis ANT/505]
Length = 149
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 11 KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
KSLKP + + D GTK IG+AI G+ L K Q + I + +
Sbjct: 4 KSLKPQGERTVMGFDFGTKSIGIAI---GQELTGSASSLKAVKA-QDGIPNWDHIAVQ-V 58
Query: 69 AAF-----IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
A + ++GLPLNM+G+ + F N + +P DERLTT A+ L
Sbjct: 59 AEWQPDLMVVGLPLNMDGTSQEVTFKAKKFA-NRLHNHYGIPVQTQDERLTTADAKARLF 117
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ + VD+++A +IL+ SF ESS G
Sbjct: 118 ESGGYKNLGKGNVDNMSAVIILE------SFFESSYG 148
>gi|299473370|emb|CBN77768.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 296
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+P++ +D GT+R+GLAI A P V + + A ++L E I ++
Sbjct: 75 RPSRRTLCVDYGTRRVGLAIGVGISPRAVPGVTNVGSDL-EVARQVLVRARGEGIRDIVV 133
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
GLPL NG+E R F + D + WDER ++ A +L
Sbjct: 134 GLPLERNGTETEMCEIVRGFASVLADVGAASRPTAGVFLWDERFSSAQAAAMLDPYGGGM 193
Query: 130 KKRIQKVDSIAAALILQEVLD 150
+++ +DS+AA+LIL+ +
Sbjct: 194 SSKVE-IDSLAASLILKHFFE 213
>gi|124025538|ref|YP_001014654.1| endonuclease [Prochlorococcus marinus str. NATL1A]
gi|167012747|sp|A2C1M9|RUVX_PROM1 RecName: Full=Putative Holliday junction resolvase
gi|123960606|gb|ABM75389.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. NATL1A]
Length = 144
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ S+D+G KRIG+A DP G H P + R + E + I G PL
Sbjct: 9 VLSLDIGDKRIGIAGCDPLGISITH-LPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPL 67
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+MNG E + + + + + + +P F +E +T+ A++ N + ++D
Sbjct: 68 DMNGMETKQSIRCKKYGIKLA-KCLKLPLAFINEHCSTLEAKEKFSLKN----DKTGRLD 122
Query: 138 SIAAALILQEVL 149
S AAA++LQ+ L
Sbjct: 123 SAAAAILLQQWL 134
>gi|126664528|ref|ZP_01735512.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17]
gi|126630854|gb|EBA01468.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17]
Length = 140
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GT+RIG+A+ P + + T +L + ++GLPLN
Sbjct: 9 VMAFDFGTRRIGVAVGQEMLGRGEPLTMIAARDGTPDWTQLEKLLHEWRPDLVVVGLPLN 68
Query: 79 MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
M+ SE R F + R V V V DERLT+ A+ ++ SR R +D
Sbjct: 69 MDDSENEMCVRARKFGKRLHGRFHVTVEMV--DERLTSYQAKGEVMAAGGSRNYRRDGID 126
Query: 138 SIAAALILQ 146
AA LIL+
Sbjct: 127 DRAAVLILE 135
>gi|32130034|sp|Q8FT24|RUVX_COREF RecName: Full=Putative Holliday junction resolvase
Length = 181
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
+D+GT RIG+A SD R A P + R+ + L+ IT + ++GL
Sbjct: 20 GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAVEVVVGL 79
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKK 131
P ++ G+ V R + R +P DERLTTV A Q L ++ +
Sbjct: 80 PRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRASGINERD 139
Query: 132 RIQKVDSIAAALILQEVLD 150
+ +D AA ILQ LD
Sbjct: 140 GRKVIDQAAAVEILQTWLD 158
>gi|323525007|ref|YP_004227160.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1001]
gi|323382009|gb|ADX54100.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1001]
Length = 146
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + R A + + EL I A ++GLP++ +
Sbjct: 13 AFDYGEKRIGVAVGNSLTRSARALVVVQNRSREYRFAELGKLIAQWKPDALVVGLPMHPD 72
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ + F N ++ + +P + DER ++V A+ L + K R +D+ A
Sbjct: 73 GTPHEMTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAEATL----RANKGRADMLDAEA 127
Query: 141 AALILQEVLDRIS 153
A++ILQ+ LD +S
Sbjct: 128 ASVILQQYLDGLS 140
>gi|330501372|ref|YP_004378241.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
NK-01]
gi|328915658|gb|AEB56489.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
NK-01]
Length = 144
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
KP + + D GTK+IG+A+ A L + + + I A ++
Sbjct: 4 KPLRLLLGFDYGTKQIGVAVGQVITGQARELCVLKAQNGVPDWSRVEALIKEWQPDAVVV 63
Query: 74 GLPLNMNGSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
GLPLNM+G+ P S RA F + R +P DERLTT A+ + S
Sbjct: 64 GLPLNMDGT--PSEMSARAEKFARRLNGR-FNLPAYTHDERLTTFEAKGQRLREGQSGGY 120
Query: 132 RIQKVDSIAAALILQEVLD 150
R + VD+IAAAL+LQ L+
Sbjct: 121 RERPVDAIAAALLLQGWLE 139
>gi|302768497|ref|XP_002967668.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii]
gi|300164406|gb|EFJ31015.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii]
Length = 186
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79
ID G +R G+A++ G PRP V K K +LLS E FI+GLP +
Sbjct: 28 GIDYGLERTGIAVTFCG---LAPRPLSVSKLKGDNLIKKLLSVAKKEKADEFIVGLPRSW 84
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ E + + TR F + V DE +T+ A + +I ++K R +VD
Sbjct: 85 DAQETEQSNKTRTFAGRLAQYSAEEGVRVFLHDEYMTSEDALEFMIYRGSTKKSRRLEVD 144
Query: 138 SIAAALI------LQEVL 149
+ AA L+ LQE L
Sbjct: 145 AYAAVLMVPKRGELQETL 162
>gi|268593081|ref|ZP_06127302.1| putative Holliday junction resolvase [Providencia rettgeri DSM
1131]
gi|291311350|gb|EFE51803.1| putative Holliday junction resolvase [Providencia rettgeri DSM
1131]
Length = 139
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P L ++ + I+GLPLNM+
Sbjct: 8 AFDFGTKSIGVAVGQEITGTARPLTSLKASDGRPDWQQIEKLLKEWQPQLVIVGLPLNMD 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E R F N I + V DERL+TV A+ L + R KVDS +
Sbjct: 68 GTEQLVTSQARNFA-NRIHGRFGVKVELHDERLSTVEAKAGLFEQGGYRALSKGKVDSAS 126
Query: 141 AALILQEVLDR 151
A +IL+ ++
Sbjct: 127 AVVILESWFEQ 137
>gi|119775606|ref|YP_928346.1| Holliday junction resolvase-like protein [Shewanella amazonensis
SB2B]
gi|119768106|gb|ABM00677.1| putative Holliday junction resolvase [Shewanella amazonensis SB2B]
Length = 139
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK IG+A+ A+P + ++ I +IGLPLN
Sbjct: 4 VMGFDFGTKSIGIAVGQSITGSANPLTSIKAVDGIPNWEDIGKLINEWKPDLLVIGLPLN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E R F N ++ + V DERLTT A+ L ++ + +VD+
Sbjct: 64 MDGTEQEMTQRARKFA-NRLNGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQVDA 122
Query: 139 IAAALILQEVLDRISFLESSKG 160
++A LI++ S+ E+ G
Sbjct: 123 VSAVLIVE------SYFENQYG 138
>gi|259507361|ref|ZP_05750261.1| Holliday junction resolvase [Corynebacterium efficiens YS-314]
gi|259165072|gb|EEW49626.1| Holliday junction resolvase [Corynebacterium efficiens YS-314]
Length = 188
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
+D+GT RIG+A SD R A P + R+ + L+ IT + ++GL
Sbjct: 27 GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAVEVVVGL 86
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKK 131
P ++ G+ V R + R +P DERLTTV A Q L ++ +
Sbjct: 87 PRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRASGINERD 146
Query: 132 RIQKVDSIAAALILQEVLD 150
+ +D AA ILQ LD
Sbjct: 147 GRKVIDQAAAVEILQTWLD 165
>gi|25028303|ref|NP_738357.1| Holliday junction resolvase-like protein [Corynebacterium efficiens
YS-314]
gi|23493587|dbj|BAC18557.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 204
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-----LLSFITTENIAAFIIGL 75
+D+GT RIG+A SD R A P + R+ + L+ IT + ++GL
Sbjct: 43 GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAVEVVVGL 102
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKK 131
P ++ G+ V R + R +P DERLTTV A Q L ++ +
Sbjct: 103 PRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRASGINERD 162
Query: 132 RIQKVDSIAAALILQEVLD 150
+ +D AA ILQ LD
Sbjct: 163 GRKVIDQAAAVEILQTWLD 181
>gi|86609208|ref|YP_477970.1| Holliday junction resolvase-like protein [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|146325617|sp|Q2JKS4|RUVX_SYNJB RecName: Full=Putative Holliday junction resolvase
gi|86557750|gb|ABD02707.1| conserved hypothetical protein TIGR00250 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 170
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G +RIG+A SD A + R+ +++ ++ +I ++G+PL +
Sbjct: 18 GLDVGNRRIGVAGSDRLGLLATGLGVIQRRSLSEDIAQVQEWIRRRQATVVVVGIPLLAD 77
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS G + + FV + V +P V +E L+T A+ L + + K + +D +
Sbjct: 78 GSVGSQARKVQRFVR-ALQVAVDLPIVTVNEYLSTAQAEWDLREAGIPAKAQKGLIDQQS 136
Query: 141 AALILQEVLD 150
AA+ILQ LD
Sbjct: 137 AAVILQTWLD 146
>gi|314966608|gb|EFT10707.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL082PA2]
gi|315092870|gb|EFT64846.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL060PA1]
gi|315103609|gb|EFT75585.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL050PA2]
gi|327327431|gb|EGE69207.1| putative Holliday junction resolvase [Propionibacterium acnes
HL103PA1]
Length = 160
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ID G RIG+A SD A P + + V + A + + E I+GLP+
Sbjct: 17 AIDWGKARIGVAASDRDAILAFPVETVYTADRPVQRLAEIVAEYEPVE----VIMGLPVA 72
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 73 LNGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQ 132
Query: 139 IAAALILQEVLD--RISFLESSKG 160
AA IL+ VL+ R+ LE++ G
Sbjct: 133 AAAVAILEHVLEQVRLGQLETATG 156
>gi|314981335|gb|EFT25429.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL110PA3]
gi|315092197|gb|EFT64173.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL110PA4]
Length = 160
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ID G RIG+A SD A P + + V + A + + E I+GLP+
Sbjct: 17 AIDWGKARIGVAASDRDAILAFPVETVYTADRPVQRLAEIVAEYEPVE----VIMGLPVA 72
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 73 LNGTEQLAAQDVRDAGRQLAEAIDPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQ 132
Query: 139 IAAALILQEVLD--RISFLESSKG 160
AA IL+ VL+ R+ LE++ G
Sbjct: 133 AAAVAILEHVLEQVRLGQLETATG 156
>gi|227503537|ref|ZP_03933586.1| YqgF family crossover junction endodeoxyribonuclease
[Corynebacterium accolens ATCC 49725]
gi|227075573|gb|EEI13536.1| YqgF family crossover junction endodeoxyribonuclease
[Corynebacterium accolens ATCC 49725]
Length = 173
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENIAAFIIGL 75
++D+GT RIG+A S+ A P + RK + + +L I I+GL
Sbjct: 11 ALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDRILELIAAYTAVEVIVGL 70
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQILIDMNV 127
P +++G+ V + + R KV P DERLTTV+A L V
Sbjct: 71 PRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLADERLTTVAATTALRASGV 130
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
S KK + +D AA ILQ LD
Sbjct: 131 SEKKGRKIIDQAAAVEILQSWLD 153
>gi|289647574|ref|ZP_06478917.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 146
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GTK+IG+A+ AH L + ++ + I A ++GLPLNM+
Sbjct: 9 GIDYGTKQIGVAVGQAITGQAHELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68
Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
G+ P S RA F + R + DERLTT A+ + + R VD
Sbjct: 69 GT--PSDMSARAEKFSRKLNGRFGVTVYTH-DERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLDR 151
+IAAAL+LQ LD
Sbjct: 126 AIAAALLLQGWLDE 139
>gi|218246765|ref|YP_002372136.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 8801]
gi|257059807|ref|YP_003137695.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 8802]
gi|226725510|sp|B7JY16|RUVX_CYAP8 RecName: Full=Putative Holliday junction resolvase
gi|218167243|gb|ACK65980.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 8801]
gi|256589973|gb|ACV00860.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 8802]
Length = 139
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KRIG+A D A + R +L ++ ++GLP +M+
Sbjct: 8 GLDIGKKRIGVAGCDGTGLIATGLTTIERTSFQSDVEQLHQWVKEREAQILVVGLPYSMD 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS G + + F I + +P + DERLT+V A+ L +D A
Sbjct: 68 GSLGFQAKQVQKFTRR-ISHVLQLPVEYVDERLTSVEAEAQLKSQKRFSTWDKGAIDRQA 126
Query: 141 AALILQEVLD 150
A +ILQ+ LD
Sbjct: 127 ATIILQQWLD 136
>gi|300115248|ref|YP_003761823.1| Holliday junction resolvase YqgF [Nitrosococcus watsonii C-113]
gi|299541185|gb|ADJ29502.1| Holliday junction resolvase YqgF [Nitrosococcus watsonii C-113]
Length = 152
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 15 PNQP-IA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
P++P IA D G + IG+A+ A+P L + ++ I N I
Sbjct: 10 PSKPRIALGFDFGLRYIGVAVGQEITHSANPLTTLKAHEGNPDWNQITQLIRQWNPDLLI 69
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKK 131
+GLPLNM+ SE + R F + R Y + W DERL+TV A++ L ++ S
Sbjct: 70 VGLPLNMDQSEQFLTKAARRFGRRLHGR--YGLTIEWIDERLSTVEARERL-NIKSSASG 126
Query: 132 RIQKVDSIAAALILQEVL 149
R Q +D +AA ILQ L
Sbjct: 127 RRQGIDQMAAQCILQTWL 144
>gi|269956482|ref|YP_003326271.1| Holliday junction resolvase YqgF [Xylanimonas cellulosilytica DSM
15894]
gi|269305163|gb|ACZ30713.1| Holliday junction resolvase YqgF [Xylanimonas cellulosilytica DSM
15894]
Length = 184
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTA-LELLSFITTENIAAFI-IGL 75
+D+G RIGLA SDP A P + R T +A + ++ E AA + +GL
Sbjct: 33 GVDVGKARIGLAASDPDGLIATPVETVARVLDATGTDSADVRAIAEAVGERFAAVVYVGL 92
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +++G EG RAF + VP DER++TV+A L K
Sbjct: 93 PRHLSGKEGAATADARAFATRLALAVAPVPVRMVDERMSTVTATSQLRAAGKKSKSHRPV 152
Query: 136 VDSIAAALILQEVLD 150
+D AA +ILQ LD
Sbjct: 153 IDQAAAVIILQSALD 167
>gi|282853868|ref|ZP_06263205.1| RNAse YqgF [Propionibacterium acnes J139]
gi|282583321|gb|EFB88701.1| RNAse YqgF [Propionibacterium acnes J139]
Length = 147
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ID G RIG+A SD A P + + V + A + + E I+GLP+
Sbjct: 4 AIDWGKARIGVAASDRDAILAFPVETVYTADRPVQRLAEIVAEYEPVE----VIMGLPVA 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 60 LNGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQ 119
Query: 139 IAAALILQEVLD--RISFLESSKG 160
AA IL+ VL+ R+ LE++ G
Sbjct: 120 AAAVAILEHVLEQVRLGQLETATG 143
>gi|306836212|ref|ZP_07469196.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Corynebacterium accolens ATCC 49726]
gi|304567933|gb|EFM43514.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Corynebacterium accolens ATCC 49726]
Length = 183
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENIAAFIIGL 75
++D+GT RIG+A S+ A P + RK + + +L I + I+GL
Sbjct: 21 ALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDRILELIGAYSAVEVIVGL 80
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQILIDMNV 127
P +++G+ V + + R KV P DERLTTV+A L V
Sbjct: 81 PRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLADERLTTVAATTALRASGV 140
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
S KK + +D AA ILQ LD
Sbjct: 141 SEKKGRKIIDQAAAVEILQSWLD 163
>gi|261363738|ref|ZP_05976621.1| putative Holliday junction resolvase [Neisseria mucosa ATCC 25996]
gi|288568309|gb|EFC89869.1| putative Holliday junction resolvase [Neisseria mucosa ATCC 25996]
Length = 158
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A D +HP + + + I ++G
Sbjct: 5 PVGTVLAFDFGEARIGVAQGDAELGLSHPLATVTGNSNDEKFNAIAKLIREWQPKHLVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPTHADGTEHELTRLSRKFGRRLHGR-FNLPIYWVDERMSSLYAESLLAEAQVFGRKQKA 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ D
Sbjct: 124 VLDQVAAQAILQGFFD 139
>gi|157372262|ref|YP_001480251.1| Holliday junction resolvase-like protein [Serratia proteamaculans
568]
gi|167012758|sp|A8GJ33|RUVX_SERP5 RecName: Full=Putative Holliday junction resolvase
gi|157324026|gb|ABV43123.1| Holliday junction resolvase YqgF [Serratia proteamaculans 568]
Length = 140
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG AI A + + ++ + ++GL
Sbjct: 3 NRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F N + + V DERL+TV A+ L D R
Sbjct: 63 PLNMDGTEQLVTEQARKFA-NRLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ +R
Sbjct: 122 VDSASAVVILESWFER 137
>gi|226941795|ref|YP_002796869.1| Holliday junction resolvase-like protein [Laribacter hongkongensis
HLHK9]
gi|226716722|gb|ACO75860.1| Putative Holliday junction resolvase [Laribacter hongkongensis
HLHK9]
Length = 155
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D G RIG+A+ D AHP L + + I I+ ++GLP + +
Sbjct: 9 GFDFGEARIGIAVGDRLVGIAHPLETLSAPDNDSRFARIAALIGEWQISGLVVGLPTHAD 68
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ R F + R +P V DER +++ A+ +L + +K+ +D +A
Sbjct: 69 GTPHEMTRLARRFAQRLHGR-FGLPVVLVDERHSSLLAEDLLRESGRRGRKQKPVLDQVA 127
Query: 141 AALILQEVLDR 151
A +ILQ D+
Sbjct: 128 AQVILQSFFDQ 138
>gi|256371740|ref|YP_003109564.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM
10331]
gi|256008324|gb|ACU53891.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM
10331]
Length = 138
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLGTKRIG+A+++ A P + + + L L ++ LP+ ++
Sbjct: 11 GVDLGTKRIGVAVAEG--SLALPLEVIDARGPWRARLAELVASVGASVVVVG--LPIGLD 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GSEG R + + + + VP VF DERL++ +A++ L V + R VD+ A
Sbjct: 67 GSEGRAAARVRQWSEGLAE-HLEVPVVFVDERLSSQAAERRLGAAGVDARSRRGAVDAFA 125
Query: 141 AALILQEVL 149
A IL+ L
Sbjct: 126 ATEILERWL 134
>gi|313837753|gb|EFS75467.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL037PA2]
gi|314927366|gb|EFS91197.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL044PA1]
gi|314972690|gb|EFT16787.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL037PA3]
Length = 160
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTE-NIAAFIIGLP 76
+ID G RIG+A SD A P + QTA ++ L+ I E I+GLP
Sbjct: 17 AIDWGKARIGVAASDRDAILAFP------VETVQTANRPMQRLAEIVAEYEPVEVIMGLP 70
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +NG+E R + + +P + DER+TT +A + L D + +++ +
Sbjct: 71 VALNGTEQLAARDIRDAGRQLAEAISPIPVRWVDERMTTRTAARALHDAGRNARQQRGVI 130
Query: 137 DSIAAALILQEVLDRI 152
D AA IL++VL+++
Sbjct: 131 DQAAAVAILEDVLEQV 146
>gi|227505017|ref|ZP_03935066.1| possible Holliday junction resolvase [Corynebacterium striatum ATCC
6940]
gi|227198381|gb|EEI78429.1| possible Holliday junction resolvase [Corynebacterium striatum ATCC
6940]
Length = 180
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 12/149 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALE-LLSFITTENIAAFIIGL 75
++D+GT RIG+A+SD A P + R K + ++ +L I ++ ++GL
Sbjct: 20 ALDVGTVRIGVAVSDSNASLALPVETVSRETGFKDQDKGDIDRILELIREYHVVEVVVGL 79
Query: 76 PLNMNGSEGPRVHSTRAFVHNM-----IDRKVYVPFV-FWDERLTTVSAQQILIDMNVSR 129
P ++ G+ V + + D + P V DERLTTV+A L VS
Sbjct: 80 PRDLQGNGSKSVKHAKEIAFRIRRRLGKDETIGQPPVRMADERLTTVAATTALRASGVSE 139
Query: 130 KKRIQKVDSIAAALILQEVLD-RISFLES 157
KK + +D AA ILQ LD R + L+S
Sbjct: 140 KKGRKVIDQAAAVEILQSWLDARHNALQS 168
>gi|226328801|ref|ZP_03804319.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198]
gi|225201987|gb|EEG84341.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198]
Length = 139
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 31/151 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ + D GTK IG+AI +++T TA L SF + I +
Sbjct: 3 NKTVMGFDFGTKSIGVAIG---------------QEITGTARPLASFKAKDGIPDWAQIE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E + F N + + V DERL+TV A+
Sbjct: 48 KIIKEWQPDLVVVGLPLNMDGTEQLVTAQAKKFA-NRLHGRFGVQIALHDERLSTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
L + R VD+ +A +IL+ ++
Sbjct: 107 HLFERGGYRSLDKGSVDAASAVIILESWFEQ 137
>gi|241759931|ref|ZP_04758031.1| conserved hypothetical protein [Neisseria flavescens SK114]
gi|241319939|gb|EER56335.1| conserved hypothetical protein [Neisseria flavescens SK114]
Length = 151
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+ D HP + + + + F++G
Sbjct: 5 PKGTVLAFDFGETRIGVVQGDAELGMTHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRI 133
LP + +G+E +R F + R +P V+W DER++++ A+ +L + V +K+
Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLP-VYWVDERMSSLYAESLLAEAQVFGRKQK 122
Query: 134 QKVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 123 SVLDQVAAQAILQGFFE 139
>gi|291320345|ref|YP_003515607.1| putative Holliday junction resolvase [Mycoplasma agalactiae]
gi|290752678|emb|CBH40651.1| Putative Holliday junction resolvase [Mycoplasma agalactiae]
Length = 146
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 14/138 (10%)
Query: 21 SIDLGTKRIGLAISD---------PGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ DLGTK G AISD F+ V KV + + +I AF
Sbjct: 5 AFDLGTKTCGFAISDILEISANAIETIYFSENDFNAVINKVKEYIKQY-----QNSIDAF 59
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++G PL NG++ R F + + DE +T+ AQ+IL D+ S KK
Sbjct: 60 VLGYPLRSNGTKSERTLMVDDFAKLLALNFSNISIYLVDEYGSTIKAQRILKDVKFSNKK 119
Query: 132 RIQKVDSIAAALILQEVL 149
K D+++A +IL + L
Sbjct: 120 TKSKKDTLSAVIILNDFL 137
>gi|330830729|ref|YP_004393681.1| Holliday junction resolvase-like protein [Aeromonas veronii B565]
gi|328805865|gb|AEB51064.1| Holliday junction resolvase-like protein [Aeromonas veronii B565]
Length = 140
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I D GTK IG+AI A P L E+ + ++GL
Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTAQPLRALKANDGIPNWDEIEKLLKEWQPDLLVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G++ R F N + + P F DERLTT A+ L + R
Sbjct: 63 PLNMDGTDQEITVRARKF-GNRLHGRFGKPVEFKDERLTTTDARARLFERGGYRALEKGS 121
Query: 136 VDSIAAALILQEVLD 150
VD ++A LI++ ++
Sbjct: 122 VDGVSAQLIVEAWME 136
>gi|298368767|ref|ZP_06980085.1| Holliday junction resolvase [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282770|gb|EFI24257.1| Holliday junction resolvase [Neisseria sp. oral taxon 014 str.
F0314]
Length = 153
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73
P + D G RIG+A D +HP V + E ++ + E F++
Sbjct: 5 PAGTTLAFDFGEVRIGVAQGDAEVGLSHPLT-TVTGGSNEVKFEAVAKLVDEWQPVQFVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKR 132
GLP++ +G+E +R F + R +P V+W DER++++ A+ +L + V +K+
Sbjct: 64 GLPVHADGTEHELTRLSRKFGRRLQGR-FKLP-VYWVDERMSSLYAESLLAEAQVFGRKQ 121
Query: 133 IQKVDSIAAALILQ 146
+D +AA ILQ
Sbjct: 122 KAVLDQVAAQAILQ 135
>gi|166367778|ref|YP_001660051.1| Holliday junction resolvase-like protein [Microcystis aeruginosa
NIES-843]
gi|189046100|sp|B0JWX2|RUVX_MICAN RecName: Full=Putative Holliday junction resolvase
gi|166090151|dbj|BAG04859.1| putative holliday junction resolvase [Microcystis aeruginosa
NIES-843]
Length = 145
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 1/131 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KR+G+A D A ++R + + + NI + GLP M
Sbjct: 8 GLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADIPQFEAIVKERNIKILVAGLPYTMA 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G G + + + + + +P + DER T++ A++ L +D A
Sbjct: 68 GELGFQAQQVQKYAQKLAI-ALDLPLEYIDERCTSLEAEEFLKAKKQFSSWDKGAIDREA 126
Query: 141 AALILQEVLDR 151
AA+ILQ+ LDR
Sbjct: 127 AAIILQQWLDR 137
>gi|159029092|emb|CAO90081.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 162
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KR+G+A D A ++R + + + NI + GLP M
Sbjct: 8 GLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADLAQFEAIVKERNIKILVAGLPYTMA 67
Query: 81 GSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
G G + + + + +D +P + DER T++ A++ L +D
Sbjct: 68 GELGFQAKQVQKYAQKLAITLD----LPLEYIDERCTSLEAEEFLKAKKQFSSWDKGAID 123
Query: 138 SIAAALILQEVLDR 151
AAA+ILQ+ LDR
Sbjct: 124 REAAAIILQQWLDR 137
>gi|91216550|ref|ZP_01253516.1| Holliday junction resolvase-like protein [Psychroflexus torquis
ATCC 700755]
gi|91185344|gb|EAS71721.1| Holliday junction resolvase-like protein [Psychroflexus torquis
ATCC 700755]
Length = 137
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D G KR G+AISD + A + + + Q EL I E++ ++G P +
Sbjct: 5 VIALDFGMKRTGIAISDEMKMIASGLRTVETRNLMQ---ELKKIIEEESVDTLVVGQPKH 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVF--WDERLTTVSAQQILIDMNVSRKKRIQK- 135
++G + F+ ++ + ++ V DER T+ A Q +ID + +K+R K
Sbjct: 62 IDGKPMQLEKNILYFIEDV--QALFPSLVIKRIDERFTSKMAFQTMIDSGLKKKQRQNKG 119
Query: 136 -VDSIAAALILQEVLDRI 152
VD I+A +ILQ L I
Sbjct: 120 LVDEISATIILQNYLQYI 137
>gi|15603735|ref|NP_246809.1| Holliday junction resolvase-like protein [Pasteurella multocida
subsp. multocida str. Pm70]
gi|32130064|sp|Q9CJX0|RUVX_PASMU RecName: Full=Putative Holliday junction resolvase
gi|12722298|gb|AAK03954.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 140
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 31/147 (21%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
+ + D GTK IG A+ + +T TA L +F + I +
Sbjct: 5 VLAFDFGTKSIGCAVG---------------QSITGTAQALPAFKAQDGIPNWDAIGKCL 49
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLPLNM+G+E R F H + R V DERLTT A+ +
Sbjct: 50 AEWQPDRVVVGLPLNMDGTEQDLTVRARKFAHRLHGR-FGVAVELQDERLTTTEARAEIF 108
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
+ KVD I+A LIL+ +
Sbjct: 109 GRGGYKALNKSKVDGISACLILESWFE 135
>gi|78486169|ref|YP_392094.1| Holliday junction resolvase YqgF [Thiomicrospira crunogena XCL-2]
gi|146325621|sp|Q31EK3|RUVX_THICR RecName: Full=Putative Holliday junction resolvase
gi|78364455|gb|ABB42420.1| Holliday junction resolvase YqgF [Thiomicrospira crunogena XCL-2]
Length = 134
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G KRIG+AI R A P + K + +A ++GLP+
Sbjct: 9 VIGFDFGLKRIGVAIGQTITRTATPEAIVASKDGKPDWEHISRLFEEWKPSAIVVGLPMR 68
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+NG E R F + R P + +E+L+++ A+Q + K Q +D
Sbjct: 69 LNGEEQALTQPARKFGQRLSGR-YQRPVYYIEEQLSSIEAEQ-------RKTKTDQPMDD 120
Query: 139 IAAALILQEVLD 150
AA +IL+ LD
Sbjct: 121 HAAQIILENWLD 132
>gi|296274383|ref|YP_003657014.1| Holliday junction resolvase YqgF [Arcobacter nitrofigilis DSM 7299]
gi|296098557|gb|ADG94507.1| Holliday junction resolvase YqgF [Arcobacter nitrofigilis DSM 7299]
Length = 126
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 10/131 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ASID+G KRIG+A+S + P+ ++RK Q + ++ +F+ I I+G P
Sbjct: 3 LASIDIGLKRIGVALS-LTKTIVTPQTAILRKNRNQASNDVDNFLKEWEIEKLIVGFP-- 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
S + FV+ + K VF +E ++++ A++++ + KR +VDS
Sbjct: 60 --SSSDDMQKRVKHFVNLL---KFEGEIVFQEENMSSIEAEELM--KGDIKYKRDGRVDS 112
Query: 139 IAAALILQEVL 149
+AA +IL+ L
Sbjct: 113 LAAKIILERYL 123
>gi|270263056|ref|ZP_06191326.1| DNA integration/recombination/invertion protein [Serratia odorifera
4Rx13]
gi|270042744|gb|EFA15838.1| DNA integration/recombination/invertion protein [Serratia odorifera
4Rx13]
Length = 140
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 31/151 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
N+ I + D GTK IG AI +++T +A L +F + +
Sbjct: 3 NRTIIAFDFGTKSIGAAIG---------------QELTGSARALAAFKAQDGSPDWQKIE 47
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLPLNM+G+E R F N + + V DERL+TV A+
Sbjct: 48 KLLKEWQPDLVVVGLPLNMDGTEQLVTDQARKFA-NRLHGRFGVQIALHDERLSTVEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
L D R VDS +A +IL+ +R
Sbjct: 107 NLFDRGGFRALDKGSVDSASAVVILESWFER 137
>gi|300309806|ref|YP_003773898.1| Holliday junction resolvase [Herbaspirillum seropedicae SmR1]
gi|300072591|gb|ADJ61990.1| Holliday junction resolvase protein [Herbaspirillum seropedicae
SmR1]
Length = 128
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D G KRIG+A+ + G + A P + + I A ++GLPL+
Sbjct: 4 ILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPLH 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+E R F N + + V V DER ++ V + +R +++D
Sbjct: 64 PDGAEHEMSVRCRRFA-NQLHGRYGVEVVLVDERYSSA----------VIQHQRGEQIDD 112
Query: 139 IAAALILQEVLD 150
AAA+ILQ+ D
Sbjct: 113 QAAAIILQQYFD 124
>gi|146305439|ref|YP_001185904.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
ymp]
gi|145573640|gb|ABP83172.1| Holliday junction resolvase YqgF [Pseudomonas mendocina ymp]
Length = 144
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
S KP + + D GTK+IG+A+ A L + + + I A
Sbjct: 2 SDKPVRLLLGFDYGTKQIGVAVGQVITGQARELCVLKAQNGVPDWNRVEALIKEWQPDAV 61
Query: 72 IIGLPLNMNGSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++GLPLNM+G+ P S RA F + + +P DERLTT A+ + S
Sbjct: 62 VVGLPLNMDGT--PSEMSARAEKFARRL-NGHFNLPAYTHDERLTTFEAKGQRLREGQSG 118
Query: 130 KKRIQKVDSIAAALILQEVLD 150
R + VD+IAAAL+LQ L+
Sbjct: 119 GYRERPVDAIAAALLLQGWLE 139
>gi|186477077|ref|YP_001858547.1| Holliday junction resolvase-like protein [Burkholderia phymatum
STM815]
gi|226725497|sp|B2JFD3|RUVX_BURP8 RecName: Full=Putative Holliday junction resolvase
gi|184193536|gb|ACC71501.1| Holliday junction resolvase YqgF [Burkholderia phymatum STM815]
Length = 151
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + R A P L + + I A ++GLP++ +
Sbjct: 13 AFDYGEKRIGVAVGNSLTRSARPLVVLQNRNREYRFEAVGKLIDEWKPDALVVGLPMHPD 72
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ R + F N ++ + +P + DER ++V A+ + S ++ +D+ A
Sbjct: 73 GTPHERTQLAKRF-GNQLNGRFNLPVTWIDERYSSVEAEAGI----RSGTRQAGMLDAEA 127
Query: 141 AALILQEVLDRISF 154
A +ILQ+ LD +S
Sbjct: 128 ACIILQQYLDGLSL 141
>gi|126640401|ref|YP_001083385.1| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978]
Length = 128
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 29 IGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVH 88
+G+AI A+P P V K +LL + FI+GLPLNM+ SE
Sbjct: 1 MGMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGLPLNMDDSESELST 60
Query: 89 STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQ 146
R F + + ++ DERLTT A++ L + + DS AAAL++Q
Sbjct: 61 RARKFARRLRHQTNIETWMV-DERLTTREAREELGFYQEQGRAKKLSADSFAAALLIQ 117
>gi|110832974|ref|YP_691833.1| endonuclease, Holliday junction resolvase [Alcanivorax borkumensis
SK2]
gi|118597202|sp|Q0VTI2|RUVX_ALCBS RecName: Full=Putative Holliday junction resolvase
gi|110646085|emb|CAL15561.1| endonuclease, possible Holliday junction resolvase [Alcanivorax
borkumensis SK2]
Length = 133
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GT++IG+A + A P L K ++ + + A ++GLPLN
Sbjct: 2 ILAFDYGTQKIGVASGNELLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLN 61
Query: 79 MNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
M+GS+ R F +H +KV++ DERL+T A++ KK +
Sbjct: 62 MDGSDSESTVRARKFANRLHGRFGKKVWLI----DERLSTREARE-----RTGIKKADSR 112
Query: 136 VDSIAAALILQ 146
VDS+AA +I +
Sbjct: 113 VDSMAAVIIAE 123
>gi|213966117|ref|ZP_03394304.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213951215|gb|EEB62610.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length = 167
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 10/139 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTE-NIAAFIIGL 75
ID+G R+G+A+SDP A P + R K ++ L + TE + ++G+
Sbjct: 21 GIDVGDVRVGVAVSDPDCILATPVETVTRATGRKDPDGPDIDRLVELATELEVVEIVVGM 80
Query: 76 PLNMNGSEG--PRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
PL ++GS G R + F + + +V V + DER+TTV AQ L + K
Sbjct: 81 PLMLDGSFGTSARKATDVGFRLQRRLGDRVVVHYA--DERMTTVMAQSRLHAAGIDVKSG 138
Query: 133 IQKVDSIAAALILQEVLDR 151
+ +D AA ILQ LDR
Sbjct: 139 RKIIDQAAAVEILQSWLDR 157
>gi|317049426|ref|YP_004117074.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b]
gi|316951043|gb|ADU70518.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b]
Length = 138
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + D GTK IG+A+ A L + T ++ + ++GL
Sbjct: 3 SETLLGFDFGTKSIGVAVGQQLTGTARALTALKAQDGTPDWGQIERLLKEWQPDYVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE R F N + + V DERL+TV A+ L + R +
Sbjct: 63 PLNMDGSEQELTARARKFA-NRLHGRFGVRVELQDERLSTVEARAGLFERGGYRALQKGA 121
Query: 136 VDSIAAALILQEVLD 150
VDS +A +IL++ D
Sbjct: 122 VDSQSAVIILEDWFD 136
>gi|227488810|ref|ZP_03919126.1| YqgF family crossover junction endodeoxyribonuclease
[Corynebacterium glucuronolyticum ATCC 51867]
gi|227542193|ref|ZP_03972242.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Corynebacterium glucuronolyticum ATCC 51866]
gi|227091232|gb|EEI26544.1| YqgF family crossover junction endodeoxyribonuclease
[Corynebacterium glucuronolyticum ATCC 51867]
gi|227182022|gb|EEI62994.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Corynebacterium glucuronolyticum ATCC 51866]
Length = 189
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVT------QTALELLSFITTENIAAFI 72
++D+GT RIG+A SD R A P + R K+V + ++ + I
Sbjct: 23 ALDVGTVRIGIASSDRDARMAMPVETVPRSHKRVGSEIPDGEDIRRIMQIVREYEPVEVI 82
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNM----IDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
IGLP ++ G+ V R + +P F DERLTTV A Q L ++
Sbjct: 83 IGLPRDLKGNGSASVVHARDIGQRLERVLAGAGQAIPVRFADERLTTVIATQALHASGLT 142
Query: 129 RKKRIQKVDSIAAALILQEVLD-RISFLESSK 159
+ + VD AA ILQ LD R S+L +S+
Sbjct: 143 ERAGRKVVDQAAAVEILQTWLDARRSYLATSQ 174
>gi|270340027|ref|ZP_06006785.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270332902|gb|EFA43688.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 117
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
L S++ E + +IG P+ ++G+ FV +P V++DER T+V A
Sbjct: 20 LSSYVKQEEVERIVIGKPMQLDGNPSENFARVENFVGRWRKSHPAIPIVYYDERFTSVLA 79
Query: 119 QQILIDMNVSRKKRIQK---VDSIAAALILQEVLD 150
+ +++ V +K R + D I+A +ILQ+ ++
Sbjct: 80 HRAILESGVKKKTRRENKGLADEISATIILQDYMN 114
>gi|148927755|ref|ZP_01811189.1| Holliday junction resolvase YqgF [candidate division TM7 genomosp.
GTL1]
gi|147886898|gb|EDK72434.1| Holliday junction resolvase YqgF [candidate division TM7 genomosp.
GTL1]
Length = 138
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPL 77
+ ++D+GTKRIG+A +D RF P L +V +E L I E + I+G P
Sbjct: 8 VIALDVGTKRIGIAHADTAVRFPVPYGTL---EVDGLEIERLREIIAELEPSLIIVGYPR 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
N G + + F + + +F DE LT+V A++ L N K +D
Sbjct: 65 NQQGEPTAQTGVVKEFAQKL--EPFQIDILFQDESLTSVLAEKYLQSQNKPYTKS--DID 120
Query: 138 SIAAALILQEVLDR 151
+ AAA+IL + L+
Sbjct: 121 AHAAAIILGDYLEE 134
>gi|314923562|gb|EFS87393.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL001PA1]
Length = 160
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ID G RIG+A SD A P + + V + A + + E I+GLP+
Sbjct: 17 AIDWGKARIGVAASDRDAILAFPVETVYTADRPVQRLAEIVAEYEPVE----VIMGLPVA 72
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+NG+E + R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 73 LNGTEQLAAQNVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQ 132
Query: 139 IAAALILQEVLDRISFLESS 158
AA IL+ VL+++ +S
Sbjct: 133 AAAVAILEHVLEQVRLGQSE 152
>gi|120436620|ref|YP_862306.1| Holliday junction resolvase-like protein [Gramella forsetii KT0803]
gi|167012728|sp|A0M3P4|RUVX_GRAFK RecName: Full=Putative Holliday junction resolvase
gi|117578770|emb|CAL67239.1| conserved hypothetical protein, UPF0081 [Gramella forsetii KT0803]
Length = 135
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D GTKR G+A++D + A L + + L + E + ++G P
Sbjct: 4 ILALDYGTKRTGVAVTDELKMIASG---LTTVQTPELIKFLEDYFKNEKVERVLVGEPKR 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
M+ + + F+ + + +P DER T+ A Q +ID + +KKR K V
Sbjct: 61 MDDTPSQSEVHIQEFLKEFVKKFPEMPMERVDERFTSKMAVQSMIDGGLKKKKRRDKALV 120
Query: 137 DSIAAALILQ 146
D I+A +ILQ
Sbjct: 121 DEISATIILQ 130
>gi|325068845|ref|ZP_08127518.1| Holliday junction resolvase YqgF [Actinomyces oris K20]
Length = 155
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D+G RIG+A D + P L R + E + + I+GLP +M
Sbjct: 4 AFDVGQARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVIVGLPKHMG 63
Query: 81 GSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
G RA+ ++ + R+V V V DERLTTVSA + L + + VD
Sbjct: 64 GGSSSSTKDARAWARDLASRLPRRVCVRLV--DERLTTVSAHRDLHAAGLKERSFRGIVD 121
Query: 138 SIAAALILQEVL 149
AA +IL++ +
Sbjct: 122 QAAAVVILEQAI 133
>gi|124514186|gb|EAY55701.1| putative holliday junction resolvase YqgF [Leptospirillum rubarum]
Length = 171
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHP-------RPFLVRKKVTQTALELLSFITTE-NIA 69
P+ ID G R+GLA+SD RF+ P FL ++ + L I TE I
Sbjct: 17 PLLGIDWGEARVGLAMSDNSLRFSEPLGVIENRCSFLPPFRIPSKSGGALKRICTEKKIQ 76
Query: 70 AFIIGLPL-NMNGSEGPRVHSTRAFVH--NMIDRKVYVPFVFWDERLTT--VSAQQILID 124
+ G+P +++G P+ + FV +I P WDE LT+ + ++++
Sbjct: 77 GIVFGVPWYHLSGDPNPK---SEVFVEYARLIRSLTGCPVFLWDEGLTSDVLKSERMSGK 133
Query: 125 MNVSR--KKRIQKVDSIAAALILQEVLDRI 152
SR K+ +D +A LILQ LD
Sbjct: 134 RKYSRSPKRSRDPIDHYSATLILQSFLDEC 163
>gi|313200415|ref|YP_004039073.1| holliday junction resolvase yqgf [Methylovorus sp. MP688]
gi|312439731|gb|ADQ83837.1| Holliday junction resolvase YqgF [Methylovorus sp. MP688]
Length = 172
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + AHP + + + + I I+GLPL+++
Sbjct: 29 AFDFGEKRIGVAVGEHLLGIAHPLTTIESEANDVRFAAITALINEWRPTVLIVGLPLSLD 88
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G E R F + D + +P V DERL++ A L + V +K+ +D +A
Sbjct: 89 GEEHATSLLCRKFARRL-DGRFGLPVVMIDERLSSAEASSSLNETGVYGRKQKVMLDQVA 147
Query: 141 AALILQEVLDRISFLESSK 159
A ILQ D +S L ++
Sbjct: 148 AQHILQSYFDTLSSLSVAQ 166
>gi|288939960|ref|YP_003442200.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180]
gi|288895332|gb|ADC61168.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180]
Length = 135
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D G ++IG+A+ R A P L + + + I +A ++GLP M+
Sbjct: 5 GFDFGPRKIGVAVGQTITRSATPLTTLRSQGEKPDWTRIEALIREWQPSALVVGLPFQMD 64
Query: 81 GSE---GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+E PRVH ++ + +P DERLT+ A + L + + R ++ VD
Sbjct: 65 DTEVAWSPRVHR----FARQLEGRYRLPVHLVDERLTSREAHRQLAERD-RRTPTLEAVD 119
Query: 138 SIAAALILQEVL 149
++AAALIL+ L
Sbjct: 120 ALAAALILETWL 131
>gi|221133772|ref|ZP_03560077.1| Holliday junction resolvase-like protein [Glaciecola sp. HTCC2999]
Length = 137
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+A+ A P + + A ++GLPLNM+
Sbjct: 6 AFDFGTKSIGVAVGQTITGTAQPLAAIKANDGIPNWDTITELHAQWQPTAMLVGLPLNMD 65
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E R F + R F DERLTT A+ L ++ +K KVDS++
Sbjct: 66 GTEQEMTLRARKFGRRISARCKSQVFEV-DERLTTTDAKARLFELGGYKKLSKDKVDSVS 124
Query: 141 AALILQ 146
A +I +
Sbjct: 125 ACVIFE 130
>gi|298207814|ref|YP_003715993.1| Holliday junction resolvase-like protein [Croceibacter atlanticus
HTCC2559]
gi|83850452|gb|EAP88320.1| Holliday junction resolvase-like protein [Croceibacter atlanticus
HTCC2559]
Length = 135
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G KR G+A++D + A VR ++ L+ + E + +IG P
Sbjct: 4 ILAIDYGAKRTGIAVTDELKLIASGLT-TVRTHDLESFLK--DYFEKEKVELVLIGEPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135
++G+ F++ +KV+ + F DER T+ A Q +ID + +K+R K
Sbjct: 61 VDGTHSENEERIIHFINRF--KKVFPTMQFERVDERFTSKMAFQTMIDSGLKKKQRQNKA 118
Query: 136 -VDSIAAALILQEVLDR 151
VD I+A +ILQ L R
Sbjct: 119 LVDEISATIILQTYLYR 135
>gi|227833216|ref|YP_002834923.1| putative Hollyday junction resolvase [Corynebacterium aurimucosum
ATCC 700975]
gi|262184202|ref|ZP_06043623.1| Holliday junction resolvase-like protein [Corynebacterium
aurimucosum ATCC 700975]
gi|254767510|sp|C3PGN1|RUVX_CORA7 RecName: Full=Putative Holliday junction resolvase
gi|227454232|gb|ACP32985.1| putative Hollyday junction resolvase [Corynebacterium aurimucosum
ATCC 700975]
Length = 182
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 61/146 (41%), Gaps = 12/146 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENIAAFIIGL 75
+D+GT RIG+A+SD R A P + R+ + LL I + +GL
Sbjct: 20 GLDVGTVRIGVAVSDRDARLAMPVETVRRETGFKDRDKDDIDRLLDLIHEYDAVEVAVGL 79
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR-------KVYVPFVFWDERLTTVSAQQILIDMNVS 128
P ++ G+ V + + R K P DERLTTV A L VS
Sbjct: 80 PRDLKGNGSSSVKHAKEIAFRIRRRLAKDDRMKEPPPVRMVDERLTTVVATSALRASGVS 139
Query: 129 RKKRIQKVDSIAAALILQEVLDRISF 154
K+ +D AA ILQ LD F
Sbjct: 140 EKRGRSVIDQAAAVEILQSWLDARHF 165
>gi|88802640|ref|ZP_01118167.1| Holliday junction resolvase-like protein [Polaribacter irgensii
23-P]
gi|88781498|gb|EAR12676.1| Holliday junction resolvase-like protein [Polaribacter irgensii
23-P]
Length = 151
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI----TTENIAAFIIG 74
I +ID G KR G+A++D + A T ELL F+ + E + +IG
Sbjct: 18 ILAIDFGKKRTGIAVTDELQIIASGL-------TTVNTDELLPFLKEYSSKEKVGLILIG 70
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P M+ S+ F+ + +P DER T+ A Q +ID + +K+R
Sbjct: 71 HPKQMDNSDSESEVLILPFIKKLEKLLPQIPLKRVDERFTSKMAFQTMIDGGMKKKQRRN 130
Query: 135 K--VDSIAAALILQEVL 149
K VD I+A +ILQ L
Sbjct: 131 KAMVDEISATIILQSYL 147
>gi|148244218|ref|YP_001218912.1| hypothetical protein COSY_0050 [Candidatus Vesicomyosocius okutanii
HA]
gi|146326045|dbj|BAF61188.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
HA]
Length = 142
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-LELLSFITTENIAAFIIGLPLNM 79
D+GTKR G+AI++ A + K T +EL I + NI FI+GLP +
Sbjct: 8 GFDIGTKRTGVAIANSLTMRATGIAVIKHHKDNSTNWVELDEVINSHNIKLFIVGLPFDK 67
Query: 80 NGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G E ++F + +R ++ V F+ DE L++ A+++L + + VD
Sbjct: 68 QGKEQIMTFIAKSFGKKLKNRYQIEVEFI--DEYLSSNEAKKLLKYNHHHHNAQRGNVDK 125
Query: 139 IAAALILQEVLDRISF 154
++ LILQ L+ F
Sbjct: 126 QSSQLILQTWLNEKKF 141
>gi|88808661|ref|ZP_01124171.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 7805]
gi|88787649|gb|EAR18806.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 7805]
Length = 151
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+D+G +RIGLA D P P L R Q L + N+ ++GLPLN
Sbjct: 3 SLDVGRRRIGLAGCDALGLTVSPLPALHRGSHAQNLHHLRTLCQHRNVKGLVVGLPLNDQ 62
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
G + H R + I R + +P F +E ++ +A +
Sbjct: 63 GQPTDQAHHCRRYG-RRIARDLGLPLAFVNEHSSSWAAAE 101
>gi|145632549|ref|ZP_01788283.1| Holliday junction resolvase-like protein [Haemophilus influenzae
3655]
gi|229845007|ref|ZP_04465144.1| Holliday junction resolvase-like protein [Haemophilus influenzae
6P18H1]
gi|144986744|gb|EDJ93296.1| Holliday junction resolvase-like protein [Haemophilus influenzae
3655]
gi|229812141|gb|EEP47833.1| Holliday junction resolvase-like protein [Haemophilus influenzae
6P18H1]
Length = 139
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 31/149 (20%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
+ D GTK IG AI + +T TA L +F + I +
Sbjct: 7 AFDFGTKSIGCAIG---------------QSITGTAQTLPAFKAQDGIPNWEAIEKCLKE 51
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I+GLPLNM+G+E R F N + + V DERLTT A+ + +
Sbjct: 52 WKPDVVIVGLPLNMDGTEQDLTLRARKFA-NRLQGRFGVNIHLQDERLTTTQARSEIFER 110
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ + K+D ++A LIL+ + +
Sbjct: 111 GGFKALKKGKIDGVSACLILESWFEYAEY 139
>gi|242035117|ref|XP_002464953.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor]
gi|241918807|gb|EER91951.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor]
Length = 214
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R GLA+ GR PRP V K + + L LL + IIGLP++
Sbjct: 76 GVDLGDARTGLAV---GRGITLPRPLTVLKLRGQKLELTLLDVARQQEADELIIGLPVSA 132
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E P+ + R+ V + + + DE T+ A + +I V + R + D
Sbjct: 133 DGRETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALEYMISRGVKKSARDTQSD 192
Query: 138 SIAA 141
+ AA
Sbjct: 193 AYAA 196
>gi|16272260|ref|NP_438472.1| Holliday junction resolvase-like protein [Haemophilus influenzae Rd
KW20]
gi|68248907|ref|YP_248019.1| Holliday junction resolvase-like protein [Haemophilus influenzae
86-028NP]
gi|145628645|ref|ZP_01784445.1| Holliday junction resolvase-like protein [Haemophilus influenzae
22.1-21]
gi|145634695|ref|ZP_01790404.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittAA]
gi|145636560|ref|ZP_01792228.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittHH]
gi|145638789|ref|ZP_01794398.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittII]
gi|145640245|ref|ZP_01795829.1| Holliday junction resolvase-like protein [Haemophilus influenzae
R3021]
gi|148827459|ref|YP_001292212.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittGG]
gi|260581226|ref|ZP_05849045.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|319775826|ref|YP_004138314.1| putative holliday junction resolvase [Haemophilus influenzae F3047]
gi|319896638|ref|YP_004134831.1| holliday junction resolvase [Haemophilus influenzae F3031]
gi|329123670|ref|ZP_08252230.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius
ATCC 11116]
gi|1175215|sp|P43981|RUVX_HAEIN RecName: Full=Putative Holliday junction resolvase
gi|81336682|sp|Q4QNN8|RUVX_HAEI8 RecName: Full=Putative Holliday junction resolvase
gi|167012730|sp|A5UGC3|RUVX_HAEIG RecName: Full=Putative Holliday junction resolvase
gi|1573274|gb|AAC21970.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|68057106|gb|AAX87359.1| putative holliday junction resolvase [Haemophilus influenzae
86-028NP]
gi|144979115|gb|EDJ88801.1| Holliday junction resolvase-like protein [Haemophilus influenzae
22.1-21]
gi|145268240|gb|EDK08235.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittAA]
gi|145270385|gb|EDK10320.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittHH]
gi|145272384|gb|EDK12292.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittII]
gi|145274831|gb|EDK14693.1| Holliday junction resolvase-like protein [Haemophilus influenzae
22.4-21]
gi|148718701|gb|ABQ99828.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittGG]
gi|260092151|gb|EEW76095.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|301169015|emb|CBW28612.1| predicted Holliday junction resolvase [Haemophilus influenzae
10810]
gi|309750279|gb|ADO80263.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
gi|309972534|gb|ADO95735.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
gi|317432140|emb|CBY80491.1| putative holliday junction resolvase [Haemophilus influenzae F3031]
gi|317450417|emb|CBY86633.1| putative holliday junction resolvase [Haemophilus influenzae F3047]
gi|327469869|gb|EGF15334.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius
ATCC 11116]
Length = 139
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 31/149 (20%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
+ D GTK IG AI + +T TA L +F + I +
Sbjct: 7 AFDFGTKSIGCAIG---------------QSITGTAQALPAFKAQDGIPNWEAIEKCLKE 51
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I+GLPLNM+G+E R F N + + V DERLTT A+ + +
Sbjct: 52 WKPDVVIVGLPLNMDGTEQDLTLRARKFA-NRLQGRFGVNVHLQDERLTTTQARSEIFER 110
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ + K+D ++A LIL+ + +
Sbjct: 111 GGFKALKKGKIDGVSACLILESWFEYAEY 139
>gi|330961163|gb|EGH61423.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 146
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GTK+IG+A+ A L + ++ + IT A ++GLPLNM+
Sbjct: 9 GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALITEWKPDAIVVGLPLNMD 68
Query: 81 GSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDS 138
G+ P S RA ++ + V DERLTT A+ + + R VD+
Sbjct: 69 GT--PSEMSARAEKFSRRLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDA 126
Query: 139 IAAALILQEVLD 150
IAAAL+LQ LD
Sbjct: 127 IAAALLLQGWLD 138
>gi|148825415|ref|YP_001290168.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittEE]
gi|229846394|ref|ZP_04466502.1| Holliday junction resolvase-like protein [Haemophilus influenzae
7P49H1]
gi|260582596|ref|ZP_05850386.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127]
gi|167012729|sp|A5UAI4|RUVX_HAEIE RecName: Full=Putative Holliday junction resolvase
gi|148715575|gb|ABQ97785.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittEE]
gi|229810487|gb|EEP46205.1| Holliday junction resolvase-like protein [Haemophilus influenzae
7P49H1]
gi|260094407|gb|EEW78305.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127]
Length = 139
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 31/149 (20%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
+ D GTK IG AI + +T TA L +F + I +
Sbjct: 7 AFDFGTKSIGCAIG---------------QSITGTAQALPAFKAQDGIPNWEAIEKCLKE 51
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I+GLPLNM+G+E R F N + + V DERLTT A+ + +
Sbjct: 52 WKPDVVIVGLPLNMDGTEQNLTLLARKFA-NRLQGRFGVNVHLQDERLTTTQARSEIFER 110
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ + KVD I+A LIL+ + +
Sbjct: 111 GGFKALKKGKVDGISACLILESWFECTEY 139
>gi|50842659|ref|YP_055886.1| endonuclease [Propionibacterium acnes KPA171202]
gi|62900965|sp|Q6A8I7|RUVX_PROAC RecName: Full=Putative Holliday junction resolvase
gi|50840261|gb|AAT82928.1| predicted endonuclease involved in recombination [Propionibacterium
acnes KPA171202]
Length = 160
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID G RIG+A SD A P + + L + I+GLP+ +N
Sbjct: 17 AIDWGKARIGVAASDRDAILAFPVETV--HTADRPVQRLAEIVAEYEPVEVIMGLPVALN 74
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E R + + +P + DER+TT +A + L + + +K+ +D A
Sbjct: 75 GTEQLAAQDVRDAGRQLTEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQAA 134
Query: 141 AALILQEVLDRISFLESS 158
A IL+ VL+++ +S
Sbjct: 135 AVAILEHVLEQVRLGQSE 152
>gi|88859063|ref|ZP_01133704.1| Holliday junction resolvase-like protein [Pseudoalteromonas
tunicata D2]
gi|88819289|gb|EAR29103.1| Holliday junction resolvase-like protein [Pseudoalteromonas
tunicata D2]
Length = 149
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GT+ IG+A+ A P + + E+ + + ++GLPLN
Sbjct: 14 VLGFDFGTRSIGIAVGQEITGSASPLKAINARDGIPNWDEIAAIVNEWQPDLLVVGLPLN 73
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+ + F N + +P DERLTT A+ L +K VDS
Sbjct: 74 MDGTNQEVTFQAKKFA-NRLHNNYGLPVETQDERLTTADAKSQLFAQGGFKKLTKGNVDS 132
Query: 139 IAAALILQEVLDRISFLESSKG 160
++A LIL+ S+ E+ G
Sbjct: 133 MSALLILE------SYFENQYG 148
>gi|332521218|ref|ZP_08397676.1| Holliday junction resolvase YqgF [Lacinutrix algicola 5H-3-7-4]
gi|332043311|gb|EGI79508.1| Holliday junction resolvase YqgF [Lacinutrix algicola 5H-3-7-4]
Length = 136
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G R GLA++D + A + + L + T E++ F++G P
Sbjct: 4 ILAIDYGKVRTGLAVTDDMQIIASGLTTVATTTLLDF---LKDYTTKESVELFLVGEPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN F+ + ++P DER T+ A Q +ID + +K+R K V
Sbjct: 61 MNNQASESEALIAPFISRLRTFFPHIPIKRVDERFTSKMAVQTMIDSGLKKKQRQNKALV 120
Query: 137 DSIAAALILQEVL 149
D I+A +ILQ L
Sbjct: 121 DEISATIILQSYL 133
>gi|154149272|ref|YP_001405978.1| Holliday junction resolvase-like protein [Campylobacter hominis
ATCC BAA-381]
gi|153805281|gb|ABS52288.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
Length = 127
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
A +D+G KRIG+A++ + P+ ++RK Q A E+ + + ++G+PL
Sbjct: 5 AGLDVGLKRIGVALAFD--KIVMPQNAVIRKNRNQAAREISEILQQNGVKKLVVGIPL-- 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
GS + ++++ K + +F DE ++V A ++ S KK+ K+DS+
Sbjct: 61 GGSSEDEMKRRITHFCSLLNFKGEI--IFMDESYSSVEADEM---RQFSGKKKDGKLDSL 115
Query: 140 AAALILQEVL 149
AA +IL+ L
Sbjct: 116 AAMVILKRYL 125
>gi|253998341|ref|YP_003050404.1| Holliday junction resolvase-like protein [Methylovorus sp. SIP3-4]
gi|253985020|gb|ACT49877.1| Holliday junction resolvase YqgF [Methylovorus sp. SIP3-4]
Length = 172
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + AHP + + + + I I+GLPL+++
Sbjct: 29 AFDFGEKRIGVAVGEHLLGIAHPLTTIESEANDVRFAAISALINEWRPTVLIVGLPLSLD 88
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G E R F + D + +P V DERL++ A L + V +K+ +D +A
Sbjct: 89 GEEHATSLLCRKFARRL-DGRFGLPVVMIDERLSSAEASSSLNETGVYGRKQKVMLDQVA 147
Query: 141 AALILQEVLDRISFL 155
A ILQ D +S L
Sbjct: 148 AQHILQSYFDTLSSL 162
>gi|289425322|ref|ZP_06427099.1| RNAse YqgF [Propionibacterium acnes SK187]
gi|289428538|ref|ZP_06430222.1| RNAse YqgF [Propionibacterium acnes J165]
gi|295130737|ref|YP_003581400.1| RNAse YqgF [Propionibacterium acnes SK137]
gi|289154300|gb|EFD02988.1| RNAse YqgF [Propionibacterium acnes SK187]
gi|289158232|gb|EFD06451.1| RNAse YqgF [Propionibacterium acnes J165]
gi|291376276|gb|ADE00131.1| RNAse YqgF [Propionibacterium acnes SK137]
gi|332675582|gb|AEE72398.1| putative Holliday junction resolvase [Propionibacterium acnes 266]
Length = 160
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID G RIG+A SD A P + + L + I+GLP+ +N
Sbjct: 17 AIDWGKARIGVAASDRDAILAFPVETV--HTADRPVQRLAEIVAEYEPVEVIMGLPVALN 74
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E R + + +P + DER+TT +A + L + + +K+ +D A
Sbjct: 75 GTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQAA 134
Query: 141 AALILQEVLDRISFLESS 158
A IL+ VL+++ +S
Sbjct: 135 AVAILEHVLEQVRLGQSE 152
>gi|78187889|ref|YP_375932.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273]
gi|146325586|sp|Q3B192|RUVX_PELLD RecName: Full=Putative Holliday junction resolvase
gi|78167791|gb|ABB24889.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273]
Length = 141
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 11/150 (7%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+KP I ID GTKRIGLA++DP + FA P + EL + + + +
Sbjct: 1 MKPKGRIVGIDYGTKRIGLAMTDPLQLFASPVGTFEPGGLHH---ELRRIMQGDTVDLAV 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P+ +GS FV + + DE ++ A +IL SRK R
Sbjct: 58 VGSPVCDDGSGNAMTAVVDRFVEELRAAFPDLRVERVDESHSSREASRILAASGKSRKVR 117
Query: 133 IQK--VDSIAAALILQEVLDRISFLESSKG 160
+K +DS AA ++L FLE ++G
Sbjct: 118 REKGRLDSAAACVLLTR------FLEENRG 141
>gi|237798181|ref|ZP_04586642.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|237806086|ref|ZP_04592790.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331021033|gb|EGI01090.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331027199|gb|EGI07254.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 146
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GTK+IG+A+ A L + ++ + IT A ++GLPLNM+
Sbjct: 9 GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALITEWKPDAIVVGLPLNMD 68
Query: 81 GSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDS 138
G+ P S RA ++ + V DERLTT A+ + + R VD+
Sbjct: 69 GT--PSDMSARAEKFSRRLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDA 126
Query: 139 IAAALILQEVLD 150
IAAAL+LQ LD
Sbjct: 127 IAAALLLQGWLD 138
>gi|329896502|ref|ZP_08271560.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC3088]
gi|328921719|gb|EGG29092.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC3088]
Length = 139
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G ++IG+A+ + + A P L + +L + + A ++G P N
Sbjct: 4 VLCFDYGLRQIGVAVGNAALQTAEPLCTLKAQDGIPNWDQLAALLEEWQPAIVVVGEPSN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G++ R F N I + V DERL++ A+Q +M + +D+
Sbjct: 64 MDGTDSDMAARARKFA-NRIHGRFGVKVALADERLSSFEAKQQAREMGHDGDYKKTPIDA 122
Query: 139 IAAALILQEVLDRISFLESSK 159
+AA +ILQ S+ E+++
Sbjct: 123 LAAMIILQ------SYFETAQ 137
>gi|313764299|gb|EFS35663.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL013PA1]
gi|313771982|gb|EFS37948.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL074PA1]
gi|313791986|gb|EFS40087.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL110PA1]
gi|313802064|gb|EFS43298.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL110PA2]
gi|313807675|gb|EFS46162.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL087PA2]
gi|313810182|gb|EFS47903.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL083PA1]
gi|313812790|gb|EFS50504.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL025PA1]
gi|313816207|gb|EFS53921.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL059PA1]
gi|313818712|gb|EFS56426.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL046PA2]
gi|313820482|gb|EFS58196.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL036PA1]
gi|313822712|gb|EFS60426.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL036PA2]
gi|313825354|gb|EFS63068.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL063PA1]
gi|313827650|gb|EFS65364.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL063PA2]
gi|313830513|gb|EFS68227.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL007PA1]
gi|313833549|gb|EFS71263.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL056PA1]
gi|313838885|gb|EFS76599.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL086PA1]
gi|314915289|gb|EFS79120.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL005PA4]
gi|314918161|gb|EFS81992.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL050PA1]
gi|314920237|gb|EFS84068.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL050PA3]
gi|314925091|gb|EFS88922.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL036PA3]
gi|314931760|gb|EFS95591.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL067PA1]
gi|314955562|gb|EFS99963.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL027PA1]
gi|314958057|gb|EFT02160.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL002PA1]
gi|314960372|gb|EFT04474.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL002PA2]
gi|314962642|gb|EFT06742.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL082PA1]
gi|314967493|gb|EFT11592.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL037PA1]
gi|314973513|gb|EFT17609.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL053PA1]
gi|314976193|gb|EFT20288.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL045PA1]
gi|314978646|gb|EFT22740.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL072PA2]
gi|314983785|gb|EFT27877.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL005PA1]
gi|314987966|gb|EFT32057.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL005PA2]
gi|314989776|gb|EFT33867.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL005PA3]
gi|315077858|gb|EFT49909.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL053PA2]
gi|315080483|gb|EFT52459.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL078PA1]
gi|315084154|gb|EFT56130.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL027PA2]
gi|315085497|gb|EFT57473.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL002PA3]
gi|315088446|gb|EFT60422.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL072PA1]
gi|315096060|gb|EFT68036.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL038PA1]
gi|315098689|gb|EFT70665.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL059PA2]
gi|315101308|gb|EFT73284.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL046PA1]
gi|315105743|gb|EFT77719.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL030PA1]
gi|315108663|gb|EFT80639.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL030PA2]
gi|327326340|gb|EGE68130.1| putative Holliday junction resolvase [Propionibacterium acnes
HL096PA2]
gi|327330411|gb|EGE72160.1| putative Holliday junction resolvase [Propionibacterium acnes
HL097PA1]
gi|327331785|gb|EGE73522.1| putative Holliday junction resolvase [Propionibacterium acnes
HL096PA3]
gi|327443562|gb|EGE90216.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL013PA2]
gi|327445766|gb|EGE92420.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL043PA2]
gi|327448251|gb|EGE94905.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL043PA1]
gi|327450627|gb|EGE97281.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL087PA3]
gi|327453295|gb|EGE99949.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL092PA1]
gi|327454035|gb|EGF00690.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL083PA2]
gi|328753293|gb|EGF66909.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL025PA2]
gi|328753317|gb|EGF66933.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL020PA1]
gi|328754045|gb|EGF67661.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL087PA1]
gi|328760698|gb|EGF74264.1| putative Holliday junction resolvase [Propionibacterium acnes
HL099PA1]
Length = 147
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID G RIG+A SD A P + + L + I+GLP+ +N
Sbjct: 4 AIDWGKARIGVAASDRDAILAFPVETV--HTADRPVQRLAEIVAEYEPVEVIMGLPVALN 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+E R + + +P + DER+TT +A + L + + +K+ +D A
Sbjct: 62 GTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQAA 121
Query: 141 AALILQEVLDRISFLESS 158
A IL+ VL+++ +S
Sbjct: 122 AVAILEHVLEQVRLGQSE 139
>gi|261749261|ref|YP_003256946.1| Holliday junction resolvase-like protein [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
gi|261497353|gb|ACX83803.1| Holliday junction resolvase-like protein [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
Length = 141
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 8/136 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
I ID G GL+I+DP ++FA F + T+ + L+ I + I +IGLP
Sbjct: 4 ILGIDYGKVITGLSITDPLQKFA----FGLNAIPTKNLMSFLAILIAKKPIKKIVIGLPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
+N S + F+ + + V DER T+ A +I++ + +K+R QK
Sbjct: 60 TLNNKNALIEKSIQNFISKFHKKNPKIRIVRIDERFTSKIAFSTMIELGLKKKRR-QKGL 118
Query: 136 VDSIAAALILQEVLDR 151
++ I+A +ILQ L +
Sbjct: 119 INKISATIILQSYLTK 134
>gi|322378432|ref|ZP_08052885.1| Holliday junction resolvase-like protein [Helicobacter suis HS1]
gi|322380510|ref|ZP_08054698.1| Holliday junction resolvase [Helicobacter suis HS5]
gi|321147065|gb|EFX41777.1| Holliday junction resolvase [Helicobacter suis HS5]
gi|321149123|gb|EFX43570.1| Holliday junction resolvase-like protein [Helicobacter suis HS1]
Length = 131
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIGLAI ++ P + R Q +LELL + T+ I+GLP
Sbjct: 2 IIACDIGLKRIGLAIY--AQKIILPLNSIKRINRKQASLELLHLLETKKATKLIVGLP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
++TR V + I+ + P ++ +E ++V A L ++ ++++ K
Sbjct: 58 ------HACYTTRQRVLHFINLLNFAPVIYVEEDNSSVEALTNLWHLSSKKRQKASKDGA 111
Query: 136 VDSIAAALILQEVL 149
+DS+AA IL+ L
Sbjct: 112 LDSLAACEILRRYL 125
>gi|77361516|ref|YP_341091.1| Holliday junction resolvase-like protein [Pseudoalteromonas
haloplanktis TAC125]
gi|146325592|sp|Q3IFA0|RUVX_PSEHT RecName: Full=Putative Holliday junction resolvase
gi|76876427|emb|CAI87649.1| putative Holliday junction resolvase [Pseudoalteromonas
haloplanktis TAC125]
Length = 149
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 39/167 (23%)
Query: 11 KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
K+ KP + + D GTK IG+AI +++T +A L + + I
Sbjct: 4 KNFKPQGQRTVMGFDFGTKSIGIAIG---------------QELTGSASSLKAVKAQDGI 48
Query: 69 AAF---------------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERL 113
+ ++GLPLNM+G+ + F N + +P DERL
Sbjct: 49 PNWDDIAVQVNEWQPDLMVVGLPLNMDGTAQEVTFKAKKFA-NRLHNHYAIPVETQDERL 107
Query: 114 TTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
TT A+ L + + KVD+++A +IL+ SF E+S G
Sbjct: 108 TTADAKARLFEQGGYKNLGKGKVDNMSAVIILE------SFFETSYG 148
>gi|311696400|gb|ADP99273.1| Holliday junction resolvase [marine bacterium HP15]
Length = 131
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GT+RIG+A+ P + + ++ S + ++GLPLNM+
Sbjct: 2 AFDFGTRRIGVAVGQELLGSGQPVALIPARDGIPDWQQIESLLEEWRPDLVVVGLPLNMD 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
+E R F + R +VP DERLT+ A+ ++ SR VD A
Sbjct: 62 DTENDMCARARKFGKRLHGR-YHVPVEMVDERLTSFEAKGEVMAAGGSRDFGRHGVDDRA 120
Query: 141 AALILQ 146
A LIL+
Sbjct: 121 AVLILE 126
>gi|212709356|ref|ZP_03317484.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM
30120]
gi|212688268|gb|EEB47796.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM
30120]
Length = 139
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 31/146 (21%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
+ D GTK IG+A+ +++T TA L S ++ +
Sbjct: 8 AFDFGTKSIGVAVG---------------QEITGTARALTSLKASDGRPDWSQIEKLLKE 52
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I+GLPLNM+G+E R F N I + V DERL+TV A+ L +
Sbjct: 53 WQPQLVIVGLPLNMDGTEQLVTSQARNFA-NRIHGRFGVQVQLHDERLSTVEAKAGLFEQ 111
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
R KVDS +A +IL+ ++
Sbjct: 112 GGYRALSKGKVDSASAVVILESWFEQ 137
>gi|309799357|ref|ZP_07693600.1| putative Holliday junction resolvase [Streptococcus infantis
SK1302]
gi|308117024|gb|EFO54457.1| putative Holliday junction resolvase [Streptococcus infantis
SK1302]
Length = 61
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 104 VPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVDSIAAALILQEVLDR 151
+P + DERLTTV+A+++LI+ ++SR KR + +D +AA LILQ LDR
Sbjct: 11 LPVEYQDERLTTVAAERMLIEQADISRNKRKKVIDKLAAQLILQNYLDR 59
>gi|32266728|ref|NP_860760.1| Holliday junction resolvase-like protein [Helicobacter hepaticus
ATCC 51449]
gi|62901012|sp|Q7VGU1|RUVX_HELHP RecName: Full=Putative Holliday junction resolvase
gi|32262779|gb|AAP77826.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 138
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 8/137 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N I + D+G KRIGLA + P P ++R Q A EL + + NI ++G+
Sbjct: 2 NHCILACDVGLKRIGLATLK--QEIILPLPPIIRINRNQAAKELDNVLKERNIHILVVGM 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +G E + + H + F +E T+ +A Q L M + R QK
Sbjct: 60 P---SGGEAEHSDTQKRISHFISLLSFEGEICFVNEDYTSFNALQSLSYMKRQNRARAQK 116
Query: 136 ---VDSIAAALILQEVL 149
+DS++A ILQ +
Sbjct: 117 DGRIDSLSACEILQRYI 133
>gi|118602105|ref|YP_903320.1| Holliday junction resolvase YqgF [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
gi|118567044|gb|ABL01849.1| Holliday junction resolvase YqgF [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
Length = 142
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-LELLSFITTENIAAFIIGLPLNM 79
D+GTKR G+AI++ A + K T + I+ NI F++GLP N
Sbjct: 8 GFDVGTKRTGIAIANSLTMQATGIKVIKHHKNGSTNWVAFNEVISAHNINKFVVGLPFNQ 67
Query: 80 NGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G E ++F + + +R ++ V F+ DE L++ A+++L + + VD
Sbjct: 68 QGKEQTMTFIAKSFGNKLKNRYQIEVEFI--DEYLSSNEAKKLLKYNHHHHNAQRDDVDK 125
Query: 139 IAAALILQEVLDRISF 154
++ LILQ L+ F
Sbjct: 126 QSSQLILQTWLNEKRF 141
>gi|88800503|ref|ZP_01116066.1| Holliday junction resolvase-like protein [Reinekea sp. MED297]
gi|88776734|gb|EAR07946.1| Holliday junction resolvase-like protein [Reinekea sp. MED297]
Length = 142
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
F++G+P NM+GSE V R F + R +P DERLTT A Q + + +
Sbjct: 56 GFVVGIPYNMDGSESQMVVRARKFRKRLHGR-FGLPAEEADERLTTREAWQHMNPASSLK 114
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
K + +DS+AA +ILQ L++
Sbjct: 115 KAKADDLDSVAAQIILQSWLEQ 136
>gi|78779183|ref|YP_397295.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
9312]
gi|146325588|sp|Q31B86|RUVX_PROM9 RecName: Full=Putative Holliday junction resolvase
gi|78712682|gb|ABB49859.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
9312]
Length = 153
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 8/153 (5%)
Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+K KP + I S D+G KRIGLA DP ++ P + R + + + + I N+
Sbjct: 1 MKFYKPKPRSILSFDVGIKRIGLAYCDPLCITSNILPAVKRVEDNKELKIIRNHIKKFNL 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNV 127
FI+GLPL+ G P+ + ++ ++ +PF + +E +T S+ + I
Sbjct: 61 TGFIVGLPLDEKGKMTPQAIDCMNY-GQLLSNELKLPFSYVNEHSSTWESSNRFGI---- 115
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+K + +DS AA +IL++ + LE G
Sbjct: 116 -KKDKSGLIDSFAAKVILEQWIKEGPELEELAG 147
>gi|32130072|sp|Q9L3I7|RUVX_AERHY RecName: Full=Putative Holliday junction resolvase
gi|7208640|emb|CAB76923.1| hypothetical protein [Aeromonas hydrophila]
Length = 140
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I D GTK IG+AI P + ++ + ++GL
Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTGQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F N + + + F DERLTT A+ L + R
Sbjct: 63 PLNMDGTEQEITVRARKF-GNRLHGRFWQAVEFKDERLTTTDARARLFERGGYRALEKGS 121
Query: 136 VDSIAAALILQEVLD 150
VD ++A LIL+ ++
Sbjct: 122 VDGVSAQLILEAWME 136
>gi|325284992|ref|YP_004260782.1| Holliday junction resolvase [Cellulophaga lytica DSM 7489]
gi|324320446|gb|ADY27911.1| Holliday junction resolvase [Cellulophaga lytica DSM 7489]
Length = 136
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID G R G+A++D + A + K++ L +I E + I+G P MN
Sbjct: 6 AIDFGKVRTGIAVTDELQIIASGLTTVATKELITF---LKDYIAKEKVDKIIVGEPKQMN 62
Query: 81 GSEG-------PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
+ P + A NMI + DER T+ A + +ID +++KKR
Sbjct: 63 NTASESEVLIVPFLEKLTAVFPNMIIER-------EDERFTSKMAFKTMIDSGLNKKKRK 115
Query: 134 QK--VDSIAAALILQEVLDR 151
K VD I+A +ILQ L R
Sbjct: 116 NKALVDEISATIILQSYLSR 135
>gi|183596313|ref|ZP_02958341.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827]
gi|188023917|gb|EDU61957.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827]
Length = 139
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 31/146 (21%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
+ D GTK IG+A+ +++T TA L S + +
Sbjct: 8 AFDFGTKSIGVAVG---------------QEITGTARSLASLKANDGRPDWQQIEKLLKE 52
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I+GLPLNM+G+E R F N I + V DERL+TV+A+ L +
Sbjct: 53 WQPQLVIVGLPLNMDGTEQLVTSQARNFA-NRIHGRFGVKVELHDERLSTVAAKAELFER 111
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
R KVDS +A +IL+ ++
Sbjct: 112 GGYRALSKGKVDSASAVVILESWFEQ 137
>gi|294139818|ref|YP_003555796.1| putative Holliday junction resolvase [Shewanella violacea DSS12]
gi|293326287|dbj|BAJ01018.1| putative Holliday junction resolvase [Shewanella violacea DSS12]
Length = 140
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK IG+AI A+P + E+ I ++GLPLN
Sbjct: 6 VLGFDYGTKSIGIAIGQSLTGTANPIGSIKAVDGIPKWEEIGMLIEEWQPDMVVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E + F N I + V DERLTT A+ L ++ + +VD+
Sbjct: 66 MDGTEQEITQRAKKFA-NRIKGRFGVKIATQDERLTTADAKARLFELGGYKALTKGQVDA 124
Query: 139 IAAALILQEVLDRI 152
++A LI++ + +
Sbjct: 125 MSAVLIIESYFETM 138
>gi|297537845|ref|YP_003673614.1| Holliday junction resolvase YqgF [Methylotenera sp. 301]
gi|297257192|gb|ADI29037.1| Holliday junction resolvase YqgF [Methylotenera sp. 301]
Length = 164
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTE-NIAAFIIGLP 76
+ D G +RIG+A+ + A P + + + + E +S + E I+GLP
Sbjct: 32 VLCFDFGEQRIGVAVGE--HLLASANPLVTIDNESNEVRFEAISKLVKEWQPKLLIVGLP 89
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+++G+E + F + R +P V DER ++V A +L + + + + +
Sbjct: 90 LSLDGAETSVTQLCKKFARRLNGR-FNLPVVLIDERYSSVEASDLLNQSGIKGRAQKEML 148
Query: 137 DSIAAALILQ 146
D +AA ILQ
Sbjct: 149 DQVAAQTILQ 158
>gi|294669544|ref|ZP_06734611.1| hypothetical protein NEIELOOT_01443 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308457|gb|EFE49700.1| hypothetical protein NEIELOOT_01443 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 154
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A AHP + + + + I ++G
Sbjct: 9 PAGTCLAFDFGEARIGVAQGGAEVGIAHPLQTVSGEGNERKFAAIARLIEEWRPDYLVVG 68
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E R F + R +P + DERLT++ A+ +L + V +K+
Sbjct: 69 LPVHSDGTEHELTRLARKFGRRLHGR-FGLPVYWADERLTSLYAESLLGEAQVFGRKQKA 127
Query: 135 KVDSIAAALILQ 146
DS+AA ILQ
Sbjct: 128 VSDSVAAQAILQ 139
>gi|163749444|ref|ZP_02156692.1| Holliday junction resolvase-like protein [Shewanella benthica KT99]
gi|161330853|gb|EDQ01780.1| Holliday junction resolvase-like protein [Shewanella benthica KT99]
Length = 140
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK IG+AI +P + E+ I ++GLPLN
Sbjct: 6 VLGFDYGTKSIGIAIGQSLTGTGNPIGSIKAVDGIPKWEEIGMLIEEWQPDIVVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E + F N I + V DERLTT A+ L ++ + +VD+
Sbjct: 66 MDGTEQEMTQRAKKFA-NRIKGRFGVKIATQDERLTTADAKARLFELGGYKALTKGQVDA 124
Query: 139 IAAALILQEVLDRI 152
++A LI++ + +
Sbjct: 125 MSAVLIIESYFENL 138
>gi|312139553|ref|YP_004006889.1| holliday junction resolvase [Rhodococcus equi 103S]
gi|325672563|ref|ZP_08152259.1| Holliday junction resolvase family protein [Rhodococcus equi ATCC
33707]
gi|311888892|emb|CBH48205.1| Holliday junction resolvase [Rhodococcus equi 103S]
gi|325556440|gb|EGD26106.1| Holliday junction resolvase family protein [Rhodococcus equi ATCC
33707]
Length = 150
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Query: 28 RIGLAISDPGRRFAHPRPFLVRKKVTQTAL----ELLSFITTENIAAFIIGLPLNMNGSE 83
RIG+A DP A P + R K +++ + I+GLP + G
Sbjct: 2 RIGVASCDPECILATPVETVPRSKEKGPDAPDIRRIVAIVEEYEAVEVIVGLPQTLRGER 61
Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
G AF + VP DERLTTV+A + L + V K + +D AA
Sbjct: 62 GKAADLASAFARRLRRAVEPVPVRMADERLTTVTASRALRESGVKAKGQRPMIDQAAAVA 121
Query: 144 ILQEVLDRIS 153
ILQ LD S
Sbjct: 122 ILQGWLDERS 131
>gi|187922872|ref|YP_001894514.1| Holliday junction resolvase-like protein [Burkholderia phytofirmans
PsJN]
gi|226725498|sp|B2T0I5|RUVX_BURPP RecName: Full=Putative Holliday junction resolvase
gi|187714066|gb|ACD15290.1| Holliday junction resolvase YqgF [Burkholderia phytofirmans PsJN]
Length = 146
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+ D G KRIG+A+ + R A P +V+ + + E + + E A ++GLP +
Sbjct: 13 AFDYGEKRIGVAVGNSLTRRARPL-VIVQNRSREYRFEAVGKLIAEWKPDALVVGLPFHP 71
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+ + F N ++ + +P + DER ++V A+ + N R +D+
Sbjct: 72 DGAPHEMTQLAKRF-GNQLNGRFNLPVTWVDERYSSVEAKAEIRAGN----GRADMLDAE 126
Query: 140 AAALILQEVLDRIS 153
AA++ILQ+ LD +S
Sbjct: 127 AASIILQQYLDGLS 140
>gi|254427533|ref|ZP_05041240.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881]
gi|196193702|gb|EDX88661.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881]
Length = 133
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GT++IG+A + A P L K ++ + + A ++GLPLN
Sbjct: 2 ILAFDYGTQKIGVASGNMLLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLN 61
Query: 79 MNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
M+GS+ R F +H +KV++ DERL+T A++ +K +
Sbjct: 62 MDGSDSESTARARKFANRLHGRFGKKVWLV----DERLSTREARE-----RTGIQKADPR 112
Query: 136 VDSIAAALILQ 146
VDS+AA +I +
Sbjct: 113 VDSMAAVVIAE 123
>gi|254468380|ref|ZP_05081786.1| conserved hypothetical protein TIGR00250 [beta proteobacterium
KB13]
gi|207087190|gb|EDZ64473.1| conserved hypothetical protein TIGR00250 [beta proteobacterium
KB13]
Length = 161
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ L DL + K + + DLG K+ G+A+ + + + K Q ++
Sbjct: 1 MTKLDNYDLKEINKKKGSVLAFDLGIKKTGVAVGNNVLKTSRNLVTFYSKNKNQRIEKIK 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVS 117
+ ++GLP N + S + T F N I++ + +P F +E ++ S
Sbjct: 61 QLVNEWQPIYLVLGLPSNRDSS----ANETTKFCLNTAKEIEKNINLPIFFVNENYSSTS 116
Query: 118 AQQILIDM-NVSRKKRIQKVDSIAAALILQEVLDRI 152
A++++ D+ N +K I VD IAA +ILQ + +
Sbjct: 117 AEELIKDLGNKKQKNNISLVDQIAADIILQSHFNEV 152
>gi|325846691|ref|ZP_08169606.1| Holliday junction resolvase-like protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481449|gb|EGC84490.1| Holliday junction resolvase-like protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 67
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 92 AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+FV +++ ++ + + DER+TT+ + +IL+DM+V R+ R + +D IAA+ ILQ LD
Sbjct: 5 SFV-DLLKKETDIDIKYQDERMTTIQSNKILMDMSVKRENRKKYIDKIAASFILQTYLD 62
>gi|190410280|ref|YP_001965781.1| yqgF [Klebsiella pneumoniae]
gi|17046115|dbj|BAB72159.1| hypothetical protein [Escherichia coli]
gi|146151073|gb|ABQ02839.1| yqgF [Klebsiella pneumoniae]
gi|225730204|gb|ACO24916.1| hypothetical protein [Enterobacter aerogenes]
gi|225730218|gb|ACO24929.1| hypothetical protein [Escherichia coli]
Length = 140
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I D GTK IG+AI A P L E+ + ++GL
Sbjct: 3 SRSIMGFDYGTKSIGVAIGQEITGSARPLRSLKANDGIPNWDEIEKLLKEWQPDLLVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G++ R F N + + P F DERLTT A+ L + +
Sbjct: 63 PLNMDGTDQEITVRARKF-GNRLHGRFGKPVEFKDERLTTTDARARLFERGGYKALDKGS 121
Query: 136 VDSIAAALILQEVLD 150
VD ++A LI++ ++
Sbjct: 122 VDGVSAQLIVEAWME 136
>gi|261346262|ref|ZP_05973906.1| putative Holliday junction resolvase [Providencia rustigianii DSM
4541]
gi|282565570|gb|EFB71105.1| putative Holliday junction resolvase [Providencia rustigianii DSM
4541]
Length = 139
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 31/146 (21%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
+ D GTK IG+A+ +++T TA L S + +
Sbjct: 8 AFDFGTKSIGVAVG---------------QEITGTARALTSLKANDGRPDWQQIEKLLKE 52
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I+GLPLNM+G+E R F N I + V DERL+TV A+ L +
Sbjct: 53 WQPQLVIVGLPLNMDGTEQLVTSQARNFA-NRIHGRFGVQVKLHDERLSTVEAKAGLFEQ 111
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
R KVDS +A +IL+ ++
Sbjct: 112 GGYRALSKGKVDSASAVVILESWFEQ 137
>gi|257126596|ref|YP_003164710.1| Holliday junction resolvase YqgF [Leptotrichia buccalis C-1013-b]
gi|257050535|gb|ACV39719.1| Holliday junction resolvase YqgF [Leptotrichia buccalis C-1013-b]
Length = 138
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G RIG+A DP A + R K T + + E ++G+P +++
Sbjct: 6 GLDVGDVRIGVAKCDPLGILATALEVIDRTK-TNPVERIKEILDDEGTKKVVVGMPKSLD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKRIQKVD 137
G++ +V FV + + +F DER TT A+ L N S+ K+R + VD
Sbjct: 65 GTKKRQVEKVEEFVEELKKSISNIQIIFVDERYTTTEAEHYL--KNYSKKNGKERRKVVD 122
Query: 138 SIAAALILQEVLD 150
+AA++ILQ+ LD
Sbjct: 123 MVAASIILQKYLD 135
>gi|254456769|ref|ZP_05070197.1| conserved hypothetical protein TIGR00250 [Campylobacterales
bacterium GD 1]
gi|207085561|gb|EDZ62845.1| conserved hypothetical protein TIGR00250 [Campylobacterales
bacterium GD 1]
Length = 131
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+IDLG KRIGLA S + P P ++RK Q + E+ + + A +IG+PL
Sbjct: 5 AIDLGLKRIGLAYS-AHKDLVTPLPAIMRKNRNQASAEVKKALKEWEVDAVVIGVPL--G 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVDSI 139
GS + A N+++ + + ++ DE +++ A+ ++ ++ R RI DSI
Sbjct: 62 GSSEDEMRRRIAHFMNLVNFEGEI--LYQDEAGSSLEAENMMKGEIKYIRDGRI---DSI 116
Query: 140 AAALILQEVL 149
+A +ILQ L
Sbjct: 117 SAMIILQRYL 126
>gi|91782034|ref|YP_557240.1| Holliday junction resolvase-like protein [Burkholderia xenovorans
LB400]
gi|296160318|ref|ZP_06843136.1| Holliday junction resolvase YqgF [Burkholderia sp. Ch1-1]
gi|118597203|sp|Q144Q1|RUVX_BURXL RecName: Full=Putative Holliday junction resolvase
gi|91685988|gb|ABE29188.1| Conserved hypothetical protein 250 [Burkholderia xenovorans LB400]
gi|295889529|gb|EFG69329.1| Holliday junction resolvase YqgF [Burkholderia sp. Ch1-1]
Length = 146
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+ D G KRIG+A+ + + A P +V+ + + E + + E A ++GLP++
Sbjct: 13 AFDYGEKRIGVAVGNSLTKSARPL-VIVQNRSREYRFEAVGKLIAEWKPNALVVGLPMHP 71
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+ + F N ++ + +P + DER ++V A+ + N R +D+
Sbjct: 72 DGTPHEMTQLAKRF-GNQLNGRFNLPVTWIDERYSSVEAKAEIRAGN----GRADMLDAE 126
Query: 140 AAALILQEVLDRIS 153
AA++ILQ+ LD +S
Sbjct: 127 AASIILQQYLDGLS 140
>gi|262370094|ref|ZP_06063421.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262315133|gb|EEY96173.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 147
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q I + D GT+++G+A+ A P K EL I F++GLP
Sbjct: 8 QMIMAFDFGTQKMGMAVGQALIESATPLALFPMKDGIPNWDELHKIIKQYQPNVFLVGLP 67
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+ SE R F + + + DERL+T +A+ L + + +
Sbjct: 68 LNMDDSESELSARARKFARR-LRHQTNIETWMVDERLSTRAARDELSHYHAQGRGKKVSA 126
Query: 137 DSIAAALILQ 146
DS+AA L ++
Sbjct: 127 DSLAATLFIE 136
>gi|257095138|ref|YP_003168779.1| Holliday junction resolvase YqgF [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047662|gb|ACV36850.1| Holliday junction resolvase YqgF [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 168
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G KRIG+A+ + R AHP + + T+ + + I ++G P +
Sbjct: 12 VLAFDFGEKRIGVAVGEWQLRQAHPLTTIHGEANTERFAAIAALIGEWRPTHLVVGRPTS 71
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G+ R F + R + +ERL++ AQ+ L ++ + + +D+
Sbjct: 72 LDGTPHAMTARCRRFADQLRGR-FGLGVDLAEERLSSFDAQERLRASGLNGRSAKKHLDA 130
Query: 139 IAAALILQEVLDRI 152
+AA LILQ D +
Sbjct: 131 VAAQLILQSYFDSV 144
>gi|28872152|ref|NP_794771.1| hypothetical protein PSPTO_5038 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213971481|ref|ZP_03399593.1| holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato T1]
gi|301385811|ref|ZP_07234229.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato Max13]
gi|302062228|ref|ZP_07253769.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato K40]
gi|302133701|ref|ZP_07259691.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|32130016|sp|Q87VA1|RUVX_PSESM RecName: Full=Putative Holliday junction resolvase
gi|28855406|gb|AAO58466.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213923763|gb|EEB57346.1| holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato T1]
gi|330873936|gb|EGH08085.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963801|gb|EGH64061.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331018478|gb|EGH98534.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 146
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GTK+IG+A+ A L + ++ + I A ++GLPLNM+
Sbjct: 9 GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68
Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
G+ P S RA F + R + DERLTT A+ + + R VD
Sbjct: 69 GT--PSEMSARAEKFSRKLNGRFGVTVYTH-DERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLD 150
+IAAAL+LQ LD
Sbjct: 126 AIAAALLLQGWLD 138
>gi|326773293|ref|ZP_08232576.1| Holliday junction resolvase [Actinomyces viscosus C505]
gi|326636523|gb|EGE37426.1| Holliday junction resolvase [Actinomyces viscosus C505]
Length = 171
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+P IA D+G RIG+A D + P L R + E + + I
Sbjct: 13 FRPGVRIA-FDVGKARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVI 71
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQILIDMNVSR 129
+GLP +M G R + ++ R +V V V DERLTTVSA + L +
Sbjct: 72 VGLPKHMGGGSSSSTRDARQWARDLASRLPQRVCVRLV--DERLTTVSAHRDLHAAGLKE 129
Query: 130 KKRIQKVDSIAAALILQEVL 149
+ VD AA +IL++ +
Sbjct: 130 RSFRGIVDQAAAVVILEQAI 149
>gi|323142904|ref|ZP_08077615.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT
12066]
gi|322417332|gb|EFY07955.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT
12066]
Length = 140
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 8/137 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G IG+A+ + A P + + A ++ + + ++G P+N
Sbjct: 3 VLAFDFGINSIGVAVGNEFTMSATPLEAVKARDGIPNADQINALFKEWQPSYIVVGYPIN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQ-ILIDMNVSRKKRIQ 134
M+G++ R F + + D+ KVY F DERLTT A++ I
Sbjct: 63 MDGTKEELTFKARKFGNRLADKFKLKVY----FKDERLTTADAKERIFSQYGYKGLASKG 118
Query: 135 KVDSIAAALILQEVLDR 151
K+D ++AALIL+ +
Sbjct: 119 KIDCVSAALILEAFFEE 135
>gi|167570975|ref|ZP_02363849.1| Holliday junction resolvase-like protein [Burkholderia oklahomensis
C6786]
Length = 146
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 11/144 (7%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENI 68
+L + + + D G KRIG+A+ + R A P L R+ + EL++ +
Sbjct: 4 ALSRDATLLAFDYGEKRIGVAVGNMLTRTARALVIVPNLNREHRFKAVGELIAEWKPD-- 61
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ + F N ++ + +P + DER ++V A+ L +
Sbjct: 62 -ALVVGLPLHPDGAPHEMTQQAKRF-GNQLNGRFNLPVSWVDERYSSVEARADL----RA 115
Query: 129 RKKRIQKVDSIAAALILQEVLDRI 152
R +VD+ AA +ILQ+ LD +
Sbjct: 116 RGSGADRVDAEAARIILQQYLDEL 139
>gi|315453492|ref|YP_004073762.1| Holliday junction resolvase [Helicobacter felis ATCC 49179]
gi|315132544|emb|CBY83172.1| Holliday junction resolvase [Helicobacter felis ATCC 49179]
Length = 127
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D+G KRIGLA+ + P P ++R Q +L F+ + ++GLP N
Sbjct: 1 MVGCDVGLKRIGLALYT--QETILPMPAILRHNRDQARHDLKIFLENKRAVGLVVGLP-N 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
++ TRA V + I+ + P + DE ++ AQ+ + + ++++ +K
Sbjct: 58 ACYTD------TRARVQHFIEGLDFAPIFYVDEDDSSAQAQERIFHLPYKQRQKARKNGI 111
Query: 136 VDSIAAALILQEVL 149
+DS+AA ++L+ L
Sbjct: 112 LDSLAACILLERYL 125
>gi|254491021|ref|ZP_05104202.1| conserved hypothetical protein TIGR00250 [Methylophaga thiooxidans
DMS010]
gi|224463534|gb|EEF79802.1| conserved hypothetical protein TIGR00250 [Methylophaga thiooxydans
DMS010]
Length = 125
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 27 KRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPR 86
K IG+A+ A+P + + ++ + I+GLPLNM+G+E
Sbjct: 2 KNIGIAVGQELTHTANPLTAIKARDGIPDWEQIHKLLDEWKPQLLIVGLPLNMDGTEQDM 61
Query: 87 VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRKKRIQKVDSIAAALIL 145
+ R F N + + +P + DERLTT A Q+ I + ++R VD ++A LIL
Sbjct: 62 TAAARRF-GNRLHGRFNIPVEWQDERLTTYEALDQMGIRSKMDTRQR-SDVDQLSAQLIL 119
Query: 146 QEVLDR 151
Q L++
Sbjct: 120 QSWLNQ 125
>gi|167563836|ref|ZP_02356752.1| Holliday junction resolvase-like protein [Burkholderia oklahomensis
EO147]
Length = 146
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITT 65
+ +L + + + D G KRIG+A+ + R A P L R+ + EL++
Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAVGNMLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ A ++GLPL+ +G+ + F N ++ + +P + DER ++V A+ L
Sbjct: 61 D---ALVVGLPLHPDGAPHEMTQQAKRF-GNQMNGRFNLPVSWVDERYSSVEARADL--- 113
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152
+R +VD+ AA +ILQ+ LD +
Sbjct: 114 -RARGSGADRVDAEAARIILQQYLDEL 139
>gi|117620774|ref|YP_857631.1| hypothetical protein AHA_3131 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|167012687|sp|A0KMY0|RUVX_AERHH RecName: Full=Putative Holliday junction resolvase
gi|117562181|gb|ABK39129.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 140
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I D GTK IG+AI A P + ++ + ++GL
Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
PLNM+G+E R F +H ++V F DERLTT A+ L + R
Sbjct: 63 PLNMDGTEQEITVRARKFGNRLHGRFGKQVE----FKDERLTTTDARARLFERGGYRALE 118
Query: 133 IQKVDSIAAALILQEVLD 150
VD ++A LIL+ ++
Sbjct: 119 KGSVDGVSAQLILEAWME 136
>gi|66043751|ref|YP_233592.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
syringae B728a]
gi|257483597|ref|ZP_05637638.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289624696|ref|ZP_06457650.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289676346|ref|ZP_06497236.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
syringae FF5]
gi|298485002|ref|ZP_07003099.1| Putative Holliday junction resolvase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|75503697|sp|Q4ZZ68|RUVX_PSEU2 RecName: Full=Putative Holliday junction resolvase
gi|63254458|gb|AAY35554.1| Conserved hypothetical protein 250 [Pseudomonas syringae pv.
syringae B728a]
gi|298160412|gb|EFI01436.1| Putative Holliday junction resolvase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330865802|gb|EGH00511.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330886262|gb|EGH20163.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
mori str. 301020]
gi|330899356|gb|EGH30775.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330951383|gb|EGH51643.1| Holliday junction resolvase-like protein [Pseudomonas syringae Cit
7]
gi|330972638|gb|EGH72704.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aceris str. M302273PT]
gi|330977061|gb|EGH77021.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|330984650|gb|EGH82753.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009672|gb|EGH89728.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 146
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GTK+IG+A+ A L + ++ + I A ++GLPLNM+
Sbjct: 9 GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68
Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
G+ P S RA F + R + DERLTT A+ + + R VD
Sbjct: 69 GT--PSDMSARAEKFSRKLNGRFGVTVYTH-DERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLD 150
+IAAAL+LQ LD
Sbjct: 126 AIAAALLLQGWLD 138
>gi|260891457|ref|ZP_05902720.1| putative Holliday junction resolvase [Leptotrichia hofstadii F0254]
gi|260858840|gb|EEX73340.1| putative Holliday junction resolvase [Leptotrichia hofstadii F0254]
Length = 138
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G RIG+A DP A + R K T + + E ++G+P +++
Sbjct: 6 GLDVGDVRIGVAKCDPLGILATALEVIDRTK-TNPVERIKEILDDEGTKKIVVGMPKSLD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKRIQKVD 137
G++ +V FV + + +F DER TT A+ L N S+ K+R + VD
Sbjct: 65 GTKKRQVEKVEEFVEELKKDIPNIQIIFVDERYTTTEAEHYL--KNYSKKNGKERRKVVD 122
Query: 138 SIAAALILQEVLD 150
+AA++ILQ+ LD
Sbjct: 123 MVAASIILQKYLD 135
>gi|313681709|ref|YP_004059447.1| holliday junction resolvase yqgf [Sulfuricurvum kujiense DSM 16994]
gi|313154569|gb|ADR33247.1| Holliday junction resolvase YqgF [Sulfuricurvum kujiense DSM 16994]
Length = 130
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +IDLG KRIGLA+S G P P + RK Q A ++ + ++G+P+
Sbjct: 4 IIAIDLGLKRIGLALS-YGNTLVTPLPAIERKNRNQAANDVKKVLNEYEATTVVVGIPMG 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ R R H M + + DE ++ A++++ R KR ++DS
Sbjct: 63 STTEDEMR----RRVAHFMNLVEFNGEIAYQDESHSSKEAEELM--KGDIRYKRDGRIDS 116
Query: 139 IAAALILQEVL 149
++A +IL+ L
Sbjct: 117 LSAKIILERYL 127
>gi|71737640|ref|YP_272778.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|146325590|sp|Q48P91|RUVX_PSE14 RecName: Full=Putative Holliday junction resolvase
gi|71558193|gb|AAZ37404.1| conserved hypothetical protein TIGR00250 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320321976|gb|EFW78072.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330919|gb|EFW86893.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 146
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GTK+IG+A+ A L + ++ + I A ++GLPLNM+
Sbjct: 9 GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68
Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
G+ P S RA F + R + DERLTT A+ + + R VD
Sbjct: 69 GT--PSDMSARAEKFSRKLNGRFGVTVYTH-DERLTTFEAKGERMARGGQKGSYRNNPVD 125
Query: 138 SIAAALILQEVLD 150
+IAAAL+LQ LD
Sbjct: 126 AIAAALLLQGWLD 138
>gi|187927716|ref|YP_001898203.1| Holliday junction resolvase-like protein [Ralstonia pickettii 12J]
gi|226731641|sp|B2U7A9|RUVX_RALPJ RecName: Full=Putative Holliday junction resolvase
gi|187724606|gb|ACD25771.1| Holliday junction resolvase YqgF [Ralstonia pickettii 12J]
Length = 143
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + R A + + V ++ + F++G+P++ +
Sbjct: 20 AFDYGEKRIGVALGNTVSRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMPVHPD 79
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G E P + + F + ++ R +P + DER ++++AQ +V +D+ A
Sbjct: 80 GEEQPMIKLAKRFGNQLLGR-YGLPVTWVDERYSSIAAQDAGASDDV--------LDAEA 130
Query: 141 AALILQEVLD 150
A +ILQ+ D
Sbjct: 131 ARIILQQFFD 140
>gi|300704910|ref|YP_003746513.1| holliday junction resolvase [Ralstonia solanacearum CFBP2957]
gi|299072574|emb|CBJ43924.1| Holliday junction resolvase [Ralstonia solanacearum CFBP2957]
Length = 144
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + R A + + V ++ I+ F++G+P++
Sbjct: 20 AFDYGEKRIGVALGNSITRSARALEIIPNRSVEYRFTQITRLISEWQPVGFVVGMPVHPE 79
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G + P + + F N + + +P + DER ++++AQ +V +D+ A
Sbjct: 80 GEDQPMIKLAKRF-GNQLRGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130
Query: 141 AALILQEVLD 150
A +ILQ+ D
Sbjct: 131 ARIILQQFFD 140
>gi|302189825|ref|ZP_07266498.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
syringae 642]
Length = 146
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GTK+IG+A+ A L + ++ + I A ++GLPLNM+
Sbjct: 9 GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68
Query: 81 GSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDS 138
G+ P S RA ++ + V DERLTT A+ + + R VD+
Sbjct: 69 GT--PSDMSARAEKFSRRLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDA 126
Query: 139 IAAALILQEVLD 150
IAAAL+LQ LD
Sbjct: 127 IAAALLLQGWLD 138
>gi|300692309|ref|YP_003753304.1| Holliday junction resolvase [Ralstonia solanacearum PSI07]
gi|299079369|emb|CBJ52041.1| Holliday junction resolvase [Ralstonia solanacearum PSI07]
Length = 144
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + R A + + V ++ ++ F++G+P++
Sbjct: 20 AFDYGEKRIGVALGNSITRSARALEVISNRSVEYRFTQITRLVSEWQPVGFVVGMPVHPE 79
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G + P + + F N + + +P + DER ++++AQ +V +D+ A
Sbjct: 80 GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130
Query: 141 AALILQEVLD 150
A +ILQ+ D
Sbjct: 131 ARIILQQFFD 140
>gi|256825089|ref|YP_003149049.1| hypothetical protein Ksed_12520 [Kytococcus sedentarius DSM 20547]
gi|256688482|gb|ACV06284.1| conserved hypothetical protein TIGR00250 [Kytococcus sedentarius
DSM 20547]
Length = 161
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT-----ENIAAFII 73
+ ++D+G R+G+A DP A P V L L + E ++
Sbjct: 2 VWAVDVGLARVGVASGDPDGVLATP----VETVAVAPGLTALDRVVQLVRQEERSTGVVV 57
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
GLP +++G E R + + R V V V DERL+TV+A + + + V K
Sbjct: 58 GLPRHLDGHESTSAVEARRWATALASRLGPTVRVWLV--DERLSTVAASRGMREAGVRAK 115
Query: 131 KRIQKVDSIAAALILQEVLD 150
++ ++D AA ILQ LD
Sbjct: 116 EQRTRIDQAAAVEILQMSLD 135
>gi|83718957|ref|YP_442009.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis E264]
gi|167618948|ref|ZP_02387579.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis Bt4]
gi|257138192|ref|ZP_05586454.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis E264]
gi|146325558|sp|Q2SYJ0|RUVX_BURTA RecName: Full=Putative Holliday junction resolvase
gi|83652782|gb|ABC36845.1| conserved hypothetical protein TIGR00250, putative [Burkholderia
thailandensis E264]
Length = 146
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 13/143 (9%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENI 68
+L + + + D G KRIG+AI + R A P L R+ + EL++ +
Sbjct: 4 ALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKPD-- 61
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
A ++GLPL+ +G+ P + RA N ++ + +P + DER ++V A+ L
Sbjct: 62 -ALVVGLPLHPDGA--PHEMTQRALRFGNQLNGRFNLPVSWVDERYSSVEARAGL----R 114
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
+R +VD+ AA +ILQ+ LD
Sbjct: 115 ARGDAANRVDAEAARVILQQFLD 137
>gi|307721583|ref|YP_003892723.1| Holliday junction resolvase YqgF [Sulfurimonas autotrophica DSM
16294]
gi|306979676|gb|ADN09711.1| Holliday junction resolvase YqgF [Sulfurimonas autotrophica DSM
16294]
Length = 132
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+IDLG KRIGLA S + P P ++RK Q + E+ I A +IG+PL
Sbjct: 5 AIDLGLKRIGLAYS-AHKDIVTPLPAVIRKNRNQASSEVKKIIQEWEADAVVIGVPL--G 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
GS + N++D + V ++ DE +++ A+ ++ + R +VDS++
Sbjct: 62 GSSEDEMRRRIEHFMNLVDFEGKV--LYQDEAGSSLEAENMM--KGKIKYIRDGRVDSLS 117
Query: 141 AALILQEVL 149
A +ILQ L
Sbjct: 118 AMVILQRFL 126
>gi|86133857|ref|ZP_01052439.1| uncharacterized protein family (UPF0081) [Polaribacter sp. MED152]
gi|85820720|gb|EAQ41867.1| uncharacterized protein family (UPF0081) [Polaribacter sp. MED152]
Length = 136
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
I ++D G R G+A++D + A ++ T L L +++ E + ++G P
Sbjct: 4 ILALDFGKVRTGIAVTDELQIIASG----LKTVATNELLPFLKNYLKQEKVELILLGKPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
M+ S+ + F+ + +P DER T+ A Q +ID + +K+R K
Sbjct: 60 QMDNSDSESEVLIKPFLEKLEKTFPKIPLKRVDERFTSKMAFQTMIDSGLKKKQRRNKAL 119
Query: 136 VDSIAAALILQEVL 149
VD I+A +ILQ L
Sbjct: 120 VDEISATIILQSYL 133
>gi|34499365|ref|NP_903580.1| Holliday junction resolvase-like protein [Chromobacterium violaceum
ATCC 12472]
gi|62901005|sp|Q7NR74|RUVX_CHRVO RecName: Full=Putative Holliday junction resolvase
gi|34105215|gb|AAQ61571.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 137
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G +RIG+A+ D HP + + + I ++GLP++ +
Sbjct: 2 AFDFGERRIGVAVGDTILGIPHPLATIDTAVTDERFAAIARLIEEWQPRQLVVGLPMHPD 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138
G E +R F N + + +P DER T+V A+Q+L + V +K R QK +D
Sbjct: 62 GEEHELSALSRRFA-NRLKGRFGLPVWLVDERYTSVIAEQLLEEAGV-KKGRKQKPALDQ 119
Query: 139 IAAALIL 145
+AA IL
Sbjct: 120 VAAQAIL 126
>gi|167580846|ref|ZP_02373720.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis TXDOH]
Length = 146
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENI 68
+L + + + D G KRIG+AI + R A P L R+ + EL++ +
Sbjct: 4 ALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKPD-- 61
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ + F N ++ + +P + DER ++V A+ L +
Sbjct: 62 -ALVVGLPLHPDGAPHEMTQQAKRF-GNQLNGRFNLPVSWVDERYSSVEARAGL----RA 115
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
R +VD+ AA +ILQ+ LD
Sbjct: 116 RGDAANRVDAEAARVILQQFLD 137
>gi|301165958|emb|CBW25532.1| putative Holliday junction resolvase [Bacteriovorax marinus SJ]
Length = 153
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRR-FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I SID G K GLA PGR F R ++ + Q EL I + ++G+P
Sbjct: 19 ILSIDYGLKVTGLACYCPGREPFPQARGRIIYQSDEQLIDELSLIIEEDFFEVIVLGIPF 78
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136
++G+E R F + ++ + DE L++ +AQ+ + + + K +++
Sbjct: 79 YLDGNESEMTKKVRQFKTLLEEKFSDLQIYEQDETLSSNAAQERMKNSPQFNFKVDPKRI 138
Query: 137 DSIAAALILQEVL 149
D +AA +IL++ +
Sbjct: 139 DEVAATIILEDFM 151
>gi|33861348|ref|NP_892909.1| hypothetical protein PMM0791 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|62901009|sp|Q7V1R4|RUVX_PROMP RecName: Full=Putative Holliday junction resolvase
gi|33633925|emb|CAE19250.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 151
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 10 VKSLKP-NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+K KP ++ I S+D+G KRIGLA D + P L R++ + + I N+
Sbjct: 1 MKYCKPKSKSILSLDVGLKRIGLAYCDSLFITVNILPALKRERNNNEIIIIKEHIKKHNL 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
FI+GLPL+ G + + + + + ++ +PF F +E +T +
Sbjct: 61 TGFIVGLPLDEAGGMTSQALDCKTYGEFLFN-ELKLPFSFVNEHSSTWESTNRF----GV 115
Query: 129 RKKRIQKVDSIAAALILQE 147
+K + +DS++A +IL++
Sbjct: 116 KKDKSGLIDSLSAKIILEQ 134
>gi|255573708|ref|XP_002527775.1| hydrolase, acting on ester bonds, putative [Ricinus communis]
gi|223532810|gb|EEF34585.1| hydrolase, acting on ester bonds, putative [Ricinus communis]
Length = 239
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
IDLG R GLAIS G F +R + +T LL E FIIGLP + +
Sbjct: 78 GIDLGLSRTGLAISK-GFSFKPLTVLELRGQKLET--RLLEIAEDEEADEFIIGLPKSWD 134
Query: 81 GSEGPRVHSTRAFVHNMIDR------KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
G E + + R+ + R +VY+ DE T+ A +I++ +S+ R +
Sbjct: 135 GKETSQCNKVRSVAGRIAVRAAERGWRVYLQ----DEHGTSTDATYWMINVGLSKGARQK 190
Query: 135 KVDSIAAALILQ 146
+D+ AA ++L+
Sbjct: 191 SIDAYAAVMVLE 202
>gi|299067786|emb|CBJ38996.1| Holliday junction resolvase [Ralstonia solanacearum CMR15]
Length = 144
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + R A + + V ++ + F++G+P++
Sbjct: 20 AFDYGEKRIGVALGNSITRSARALEIIPNRSVEYRFTQITRLVNAWQPVGFVVGMPVHPE 79
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G + P + + F N + + +P + DER ++++AQ +V +D+ A
Sbjct: 80 GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130
Query: 141 AALILQEVLD 150
A +ILQ+ D
Sbjct: 131 ARIILQQFFD 140
>gi|309780780|ref|ZP_07675521.1| Holliday junction resolvase [Ralstonia sp. 5_7_47FAA]
gi|308920462|gb|EFP66118.1| Holliday junction resolvase [Ralstonia sp. 5_7_47FAA]
Length = 143
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + R A + + V ++ + F++G+P++ +
Sbjct: 20 AFDYGEKRIGVALGNSITRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMPVHPD 79
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G E P + + F N + + +P + DER ++++AQ +V +D+ A
Sbjct: 80 GEEQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGASDDV--------LDAEA 130
Query: 141 AALILQEVLD 150
A +ILQ+ D
Sbjct: 131 ARIILQQFFD 140
>gi|172040633|ref|YP_001800347.1| putative Hollyday junction resolvase [Corynebacterium urealyticum
DSM 7109]
gi|171851937|emb|CAQ04913.1| putative Hollyday junction resolvase [Corynebacterium urealyticum
DSM 7109]
Length = 143
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G+ RIG+A+SDP A P + ++ I + I+GLP+ +
Sbjct: 28 ALDVGSVRIGVALSDPDGILASPLETVAAAVDGSDVARVVELIEENFVVEVIVGLPVALR 87
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
G+ + F ++ + +P DER++T++A Q VS KK
Sbjct: 88 GNHTSSTVAALDFYEDLGEELPELPIRLVDERMSTMAATQAFQASGVSAKK 138
>gi|17545395|ref|NP_518797.1| Holliday junction resolvase-like protein [Ralstonia solanacearum
GMI1000]
gi|32130046|sp|Q8Y1L4|RUVX_RALSO RecName: Full=Putative Holliday junction resolvase
gi|17427687|emb|CAD14206.1| putative holliday junction resolvase protein [Ralstonia
solanacearum GMI1000]
Length = 144
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + R A + + V ++ + F++G+P++
Sbjct: 20 AFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITRLVNAWQPVGFVVGMPVHPE 79
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G + P + + F N + + +P + DER ++++AQ +V +D+ A
Sbjct: 80 GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130
Query: 141 AALILQEVLD 150
A +ILQ+ D
Sbjct: 131 ARIILQQFFD 140
>gi|207744138|ref|YP_002260530.1| holliday junction resolvase protein [Ralstonia solanacearum
IPO1609]
gi|206595542|emb|CAQ62469.1| putative holliday junction resolvase protein [Ralstonia
solanacearum IPO1609]
Length = 144
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + R A + + V ++ I F++G+P++
Sbjct: 20 AFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFSQITRLINEWQPVGFVVGMPVHPE 79
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G + P + + F N + + +P + DER ++++AQ +V +D+ A
Sbjct: 80 GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130
Query: 141 AALILQEVLD 150
A +ILQ+ D
Sbjct: 131 ARIILQQFFD 140
>gi|147819080|emb|CAN65349.1| hypothetical protein VITISV_000639 [Vitis vinifera]
Length = 213
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 25/128 (19%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+DLG R GLA+S + F VR + FIIGLP++ +
Sbjct: 68 GVDLGMSRTGLALS---------KGFSVR--------------PLSEVDEFIIGLPVSDD 104
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G E P+ + R+ + R + + DE T+ A +IDM S+ R +D+
Sbjct: 105 GKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSFMIDMGHSKSARQNSIDA 164
Query: 139 IAAALILQ 146
AA ++L+
Sbjct: 165 YAAMMVLE 172
>gi|260062213|ref|YP_003195293.1| Holliday junction resolvase-like protein [Robiginitalea biformata
HTCC2501]
gi|88783775|gb|EAR14946.1| Holliday junction resolvase-like protein [Robiginitalea biformata
HTCC2501]
Length = 132
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
+D G KR G+A++DP + A L + + L S++ E + +IG P M+
Sbjct: 1 MDYGQKRTGIAVTDPLQMIASG---LTTVQTPELLDFLESYMGEEQVERIVIGEPRRMDN 57
Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID--MNVSRKKRIQKVDSI 139
S R+F+ + R +P DER ++ A + +I+ M +++ VD I
Sbjct: 58 SPSGIEAEIRSFIERIKKRFPDLPLSRQDERFSSQMAVRAMIEGGMKKKKRRDKAAVDKI 117
Query: 140 AAALILQEVL 149
+A LILQ L
Sbjct: 118 SATLILQSYL 127
>gi|187479481|ref|YP_787506.1| Holliday junction resolvase-like protein [Bordetella avium 197N]
gi|146325554|sp|Q2KUT2|RUVX_BORA1 RecName: Full=Putative Holliday junction resolvase
gi|115424068|emb|CAJ50621.1| putative holliday junction resolvase [Bordetella avium 197N]
Length = 131
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + A P + ++ + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGVAIGNTLTCHARPLEIIFSERRDERFGRIQALLEAWRPQRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
L L +G + P R F + + R V V V DER +++ AQ+ L
Sbjct: 62 LALATDGGDQPATLRCRRFANQLHGRFGVTVELV--DERGSSMEAQEKLGSHAPD----- 114
Query: 134 QKVDSIAAALILQEVLDRIS 153
D++AAA+ILQ LDR++
Sbjct: 115 ---DAMAAAIILQRYLDRLA 131
>gi|212703915|ref|ZP_03312043.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098]
gi|212672618|gb|EEB33101.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098]
Length = 145
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 10/135 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP------RPFLVRKKVTQTALELLSFITTENIAAFIIG 74
ID G R GLA +DP A+P + RK+ L I E A ++G
Sbjct: 5 GIDYGLARTGLAATDPEGIMAYPLTTIRLADYANRKEFLAA---LAGRILEERPDAVVMG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPL +G+E R V + R+V +PF F E L++ +A++ L ++ + ++
Sbjct: 62 LPLLTDGTESMTTRQVRN-VTERLKRRVPLPFYFMSELLSSEAAERELREVGRTGRRCKA 120
Query: 135 KVDSIAAALILQEVL 149
+D AA IL+ L
Sbjct: 121 VLDQQAAVRILESFL 135
>gi|207728127|ref|YP_002256521.1| putative holliday junction resolvase protein [Ralstonia
solanacearum MolK2]
gi|206591372|emb|CAQ56984.1| putative holliday junction resolvase protein [Ralstonia
solanacearum MolK2]
Length = 144
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + R A + + V ++ I F++G+P++
Sbjct: 20 AFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFSQITRLINEWQPVGFVVGMPVHPE 79
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G + P + + F N + + +P + DER ++++AQ +V +D+ A
Sbjct: 80 GEDQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGATDDV--------LDAEA 130
Query: 141 AALILQEVLD 150
A +ILQ+ D
Sbjct: 131 ARIILQQFFD 140
>gi|154508866|ref|ZP_02044508.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC
17982]
gi|153798500|gb|EDN80920.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC
17982]
Length = 162
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+GT R+G++ DP P L R L + + + I+GLP ++
Sbjct: 10 GVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVGLPRHLR 69
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
G EG R + + K VP V DER+T+ A L + + +D
Sbjct: 70 GGEGISAKGARKYARRL---KKLVPDVRVAMVDERMTSNQAHARLRASGIPEIEHRSVID 126
Query: 138 SIAAALILQEVLD 150
+AA +IL++ L+
Sbjct: 127 QVAAQIILEQALE 139
>gi|194290484|ref|YP_002006391.1| holliday junction resolvase-like protein [Cupriavidus taiwanensis
LMG 19424]
gi|254767511|sp|B3R605|RUVX_CUPTR RecName: Full=Putative Holliday junction resolvase
gi|193224319|emb|CAQ70330.1| Holliday junction resolvase [Cupriavidus taiwanensis LMG 19424]
Length = 141
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 9/142 (6%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ L + + + D G K+IG+A+ + R A L V + + I N
Sbjct: 7 RELPRDGTVLAFDYGEKKIGVALGNFITREARALTILPNITVEGRFEAVAALIQAWNPVQ 66
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
I+G+P+N G E P + R F N ++ + +P + DER T+ +A M +R+
Sbjct: 67 LIVGMPVNPEGGEQPSMKLARRF-GNQLNGRFGLPVEWVDERYTSRAA-----SMAGARR 120
Query: 131 KRIQKVDSIAAALILQEVLDRI 152
++D+ AA +ILQ+ D+
Sbjct: 121 G---ELDAEAARIILQQYFDQF 139
>gi|241662185|ref|YP_002980545.1| Holliday junction resolvase-like protein [Ralstonia pickettii 12D]
gi|240864212|gb|ACS61873.1| Holliday junction resolvase YqgF [Ralstonia pickettii 12D]
Length = 143
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + R A + + V ++ + F++G+P++ +
Sbjct: 20 AFDYGEKRIGVALGNSITRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMPVHPD 79
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G E P + + F N + + +P + DER ++++AQ +V +D+ A
Sbjct: 80 GEEQPMIKLAKRF-GNQLHGRYGLPVTWVDERYSSIAAQDAGASDDV--------LDAEA 130
Query: 141 AALILQEVLD 150
A +ILQ+ D
Sbjct: 131 ARIILQQFFD 140
>gi|145298211|ref|YP_001141052.1| Holliday junction resolvase-like protein [Aeromonas salmonicida
subsp. salmonicida A449]
gi|167012688|sp|A4SK82|RUVX_AERS4 RecName: Full=Putative Holliday junction resolvase
gi|142850983|gb|ABO89304.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 140
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I D GTK IG+AI A P + ++ + ++GL
Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGVPNWDDIEKLLKEWQPDLLVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
PLNM+G+E R F +H ++V F DERLTT A+ L + +
Sbjct: 63 PLNMDGTEQEITVRARKFGNRLHGRFGKQVE----FKDERLTTTDARARLFERGGYKALD 118
Query: 133 IQKVDSIAAALILQEVLD 150
VD ++A LIL+ ++
Sbjct: 119 KGSVDGVSAQLILEAWME 136
>gi|57242343|ref|ZP_00370282.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis
RM3195]
gi|57017023|gb|EAL53805.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis
RM3195]
Length = 127
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++DLG KRIGLA+ A P ++RK Q A E+ I I+ I+GLP
Sbjct: 6 ALDLGLKRIGLALYVE--NIAVPLNAILRKNRNQAASEVQKLIKEHQISKLIVGLP-KGG 62
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVDSI 139
SE V T+ H + + +F DE T+ AQ D+ V+ +K+ K+DS+
Sbjct: 63 ASE---VEMTKRVQHFISLLEFDGEVIFVDEAYTSKEAQ----DLGVANSRKKDGKLDSL 115
Query: 140 AAALILQ 146
AA ++L+
Sbjct: 116 AALIMLR 122
>gi|308177508|ref|YP_003916914.1| Holliday junction resolvase [Arthrobacter arilaitensis Re117]
gi|307744971|emb|CBT75943.1| putative Holliday junction resolvase [Arthrobacter arilaitensis
Re117]
Length = 157
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITTENIAAFIIGLPLN 78
+D+G R+G+A SDP A P +R+ V + + LL I + +G P +
Sbjct: 7 GVDVGLARVGVAASDPSGILATP-VMTLRRDVKKNSDRRMLLRIIADRGVTEVFVGEPKS 65
Query: 79 MNGSEGPRVHSTR----AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+ G+ R A + + DERL+TV+A + L + +
Sbjct: 66 LAGNSTESTKMARDYAIALAEEAASANIELEVFMVDERLSTVNAHRALHASGKKMEDHRK 125
Query: 135 KVDSIAAALILQEVLD 150
VD +AA ILQ+VL+
Sbjct: 126 VVDQVAATEILQQVLE 141
>gi|113868870|ref|YP_727359.1| Holliday junction resolvase-like protein [Ralstonia eutropha H16]
gi|123328961|sp|Q0K7N0|RUVX_RALEH RecName: Full=Putative Holliday junction resolvase
gi|113527646|emb|CAJ93991.1| predicted endonuclease involved in recombination [Ralstonia
eutropha H16]
Length = 141
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 9/142 (6%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ L + + + D G K+IG+A+ + R A L V + + I N
Sbjct: 7 RELPRDGTVLAFDYGEKKIGVALGNFITREARALTILPNITVEGRFEAVAALIQEWNPVQ 66
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
I+G+P+N G E P + R F N ++ + +P + DER T+ +A M +R+
Sbjct: 67 LIVGMPVNPEGGEQPSMKLARRF-GNQLNGRFGLPVEWVDERYTSRAA-----SMAGARR 120
Query: 131 KRIQKVDSIAAALILQEVLDRI 152
++D+ AA +ILQ+ D+
Sbjct: 121 G---ELDAEAARIILQQYFDQF 139
>gi|295134936|ref|YP_003585612.1| Holliday junction resolvase-like protein [Zunongwangia profunda
SM-A87]
gi|294982951|gb|ADF53416.1| Holliday junction resolvase-like protein [Zunongwangia profunda
SM-A87]
Length = 134
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPL 77
+ ++D G KR G+A++D + A + T + L L + E + ++G P
Sbjct: 4 VMALDYGVKRTGIAVTDELQMIASGLTTVD----TSSLLNFLEDYFKKEKVETVVVGEPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
+ S F+ ++ + V DER T+ A Q +ID + +KKR K
Sbjct: 60 QKDNSASQSEVFIAEFLKKFTEKFPEMKLVRVDERFTSKMAFQTMIDSGLKKKKRQNKAL 119
Query: 136 VDSIAAALILQEVL 149
VD ++A +ILQ L
Sbjct: 120 VDEVSATIILQSYL 133
>gi|293192680|ref|ZP_06609634.1| putative Holliday junction resolvase [Actinomyces odontolyticus
F0309]
gi|292820187|gb|EFF79184.1| putative Holliday junction resolvase [Actinomyces odontolyticus
F0309]
Length = 162
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+GT R+G++ DP P L R L + + + I+GLP ++
Sbjct: 10 GVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVGLPRHLR 69
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFV---FWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
G EG R + + K VP V DER+T+ A L + + +D
Sbjct: 70 GGEGISAKGARKYARRI---KKLVPDVRVAMVDERMTSNQAHARLRASGIPEIEHRSVID 126
Query: 138 SIAAALILQEVLD 150
+AA +IL++ L+
Sbjct: 127 QVAAQIILEQALE 139
>gi|315638454|ref|ZP_07893631.1| Holliday junction resolvase family protein [Campylobacter
upsaliensis JV21]
gi|315481445|gb|EFU72072.1| Holliday junction resolvase family protein [Campylobacter
upsaliensis JV21]
Length = 127
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++DLG KRIGLA+ A P ++RK Q A E+ I I+ I+GLP
Sbjct: 6 ALDLGLKRIGLALYVE--NIAMPLNAILRKNRNQAANEVRKLIEEHQISKLIVGLP-KGG 62
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
SE V T+ H + + +F DE T+ AQ + + + +K+ K+DS+A
Sbjct: 63 ASE---VEMTKRVQHFISLLEFDGEVIFVDEAYTSKEAQGLGV---ANSRKKDGKLDSLA 116
Query: 141 AALILQ 146
A ++L+
Sbjct: 117 ALIMLR 122
>gi|289706210|ref|ZP_06502573.1| RNAse H-fold protein YqgF [Micrococcus luteus SK58]
gi|289557049|gb|EFD50377.1| RNAse H-fold protein YqgF [Micrococcus luteus SK58]
Length = 173
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
+D+G R+G+A +DP A P L R + + EL++ ++ A +GLP+N+
Sbjct: 22 GVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDELVAHARELDVVAVYVGLPVNL 81
Query: 80 NGSEGPRVHST----RAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
G P A +++ VP DERL+TVSAQ L
Sbjct: 82 RGEHTPSTQDALDYADAVAAALVEVSHPVPVRLVDERLSTVSAQAGL 128
>gi|148239493|ref|YP_001224880.1| putative Holliday junction resolvase [Synechococcus sp. WH 7803]
gi|147848032|emb|CAK23583.1| Putative Holliday junction resolvase [Synechococcus sp. WH 7803]
Length = 159
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+D+G +RIGLA DP P L R Q L + N+ ++GLPL+
Sbjct: 3 SLDVGRRRIGLAGCDPLGLTVSSLPALHRGSHAQNLQHLRNLCHQRNVQGLVVGLPLDDQ 62
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
G + H + I R + +P F +E ++ +A +
Sbjct: 63 GQRTDQAHHCHRYG-QRIARDLGLPLAFVNEHSSSWAAAE 101
>gi|254525703|ref|ZP_05137755.1| conserved hypothetical protein TIGR00250 [Prochlorococcus marinus
str. MIT 9202]
gi|221537127|gb|EEE39580.1| conserved hypothetical protein TIGR00250 [Prochlorococcus marinus
str. MIT 9202]
Length = 140
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
+D+GTKRIGLA DP ++ P + R + Q + + I N+ FI+G+PL+ G
Sbjct: 1 MDVGTKRIGLAYCDPLCITSNILPPVKRLENNQEIKIIRNHINELNLTGFIVGIPLDDKG 60
Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
+ + + +++ ++ +PF + +E +T + D +K + +DS +A
Sbjct: 61 LMTSQAIDCKNYGQLLLN-ELKLPFSYVNEHSSTWESS----DRFGIKKDKSGLIDSFSA 115
Query: 142 ALILQEVLDRISFLES 157
+IL++ ++ LE
Sbjct: 116 KIILEQWIEEGPELEE 131
>gi|90415257|ref|ZP_01223191.1| putative holliday junction resolvase [marine gamma proteobacterium
HTCC2207]
gi|90332580|gb|EAS47750.1| putative holliday junction resolvase [marine gamma proteobacterium
HTCC2207]
Length = 145
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLPLNM+ SE + R F + R V V V DERLT+ A+ + D
Sbjct: 63 VVGLPLNMDDSESDLSNRARKFARRLQGRFAVDVEMV--DERLTSREAKSLGRDQGT--- 117
Query: 131 KRIQKVDSIAAALILQEVLD 150
+ + K+D IAA+LILQ LD
Sbjct: 118 QDLTKIDHIAASLILQSWLD 137
>gi|170719654|ref|YP_001747342.1| Holliday junction resolvase-like protein [Pseudomonas putida W619]
gi|169757657|gb|ACA70973.1| Holliday junction resolvase YqgF [Pseudomonas putida W619]
Length = 141
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D G+K+IG+A+ A L + ++ I A ++GLPLNM+
Sbjct: 9 GFDYGSKQIGVAVGQVVTGQARELCTLKAQNGVPDWAQVEKLINEWKPDAIVVGLPLNMD 68
Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVD 137
G+ P S RA F + R +P DERLTT A+ + R R VD
Sbjct: 69 GT--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125
Query: 138 SIAAALILQEVLD 150
+IAAAL+LQ L+
Sbjct: 126 AIAAALLLQGWLE 138
>gi|256832582|ref|YP_003161309.1| Holliday junction resolvase YqgF [Jonesia denitrificans DSM 20603]
gi|256686113|gb|ACV09006.1| Holliday junction resolvase YqgF [Jonesia denitrificans DSM 20603]
Length = 167
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 17/155 (10%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------------VTQTALELLSFITTENI 68
+D+G R+G+A DP A P L R + V T +E L I E +
Sbjct: 11 GVDVGQVRVGVAACDPDTILATPVETLARDRSVSYVAGGKVPSVLPTDIEDLREIAEERL 70
Query: 69 A-AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTVSAQQILIDM 125
A A +GLP +++G+ G V + A + + ++V ++ DERLT+ +A L D
Sbjct: 71 AVAVYVGLPKHLSGARG--VSAEMAVNYASLVQRVLPHLEVRLVDERLTSKTAHSALHDA 128
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
++ +D AA +IL L+ L S G
Sbjct: 129 GRRAREHRTVIDQAAAVVILDTALEAEKRLGSWAG 163
>gi|71279034|ref|YP_267994.1| Holliday junction resolvase-like protein [Colwellia psychrerythraea
34H]
gi|146325564|sp|Q486M1|RUVX_COLP3 RecName: Full=Putative Holliday junction resolvase
gi|71144774|gb|AAZ25247.1| conserved hypothetical protein TIGR00250 [Colwellia psychrerythraea
34H]
Length = 148
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 6/145 (4%)
Query: 12 SLKPNQPIA-----SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
S K PI D G K IG+A+ A P + L ++
Sbjct: 2 STKTKSPIGQRTVIGFDFGKKYIGVAVGQEMTGSATPLGSVKATDGIPHWDNLAKYLKEW 61
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
++GLPLNM+GSE + F N I + + F DERLTT A++ L
Sbjct: 62 QPDFIVVGLPLNMDGSEQQLTLDAKKF-GNRIHGRFGIQVEFQDERLTTADAKEQLFARG 120
Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
+ + +D+ +A LI++ ++
Sbjct: 121 GFKNLKKDNIDAESARLIIESYFEQ 145
>gi|319778591|ref|YP_004129504.1| Putative Holliday junction resolvase [Taylorella equigenitalis
MCE9]
gi|317108615|gb|ADU91361.1| Putative Holliday junction resolvase [Taylorella equigenitalis
MCE9]
Length = 151
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D G K+IG+A+ + + A P + V + ++I N ++GLP+
Sbjct: 14 ILAFDYGKKKIGVALGNSITKSARPLGIIHNDTVDARFEGVANYINEWNPDLLVVGLPIT 73
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ G E +R F N + + +P DER ++V AQ+I D
Sbjct: 74 LGGQEQEASRLSRKFA-NQLHGRFNLPVELIDERYSSVEAQEIC--------HCGPDEDH 124
Query: 139 IAAALILQ 146
AAA+IL+
Sbjct: 125 YAAAVILE 132
>gi|154174481|ref|YP_001408003.1| Holliday junction resolvase-like protein [Campylobacter curvus
525.92]
gi|112803348|gb|EAU00692.1| conserved hypothetical protein [Campylobacter curvus 525.92]
Length = 127
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ +ID+G KR+G+A G P+ ++RK Q A E+ + + ++G+
Sbjct: 2 SEKFMAIDVGLKRVGVAFGTGG--IVVPQEPILRKNRNQAAREVSARVQEYGADTLVVGV 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + + R R H + ++ V+ DE ++ A +I D KR +
Sbjct: 60 PKGGSSEDEMR----RRIEHFVSLLEISAKIVYQDEAFSSFEASEIYTDT-----KRDGR 110
Query: 136 VDSIAAALILQEVL 149
+DS+AA LIL+ L
Sbjct: 111 LDSVAAMLILKRYL 124
>gi|54310237|ref|YP_131257.1| Holliday junction resolvase-like protein [Photobacterium profundum
SS9]
gi|62900980|sp|Q6LMM2|RUVX_PHOPR RecName: Full=Putative Holliday junction resolvase
gi|46914678|emb|CAG21455.1| conserved hypothetical protein [Photobacterium profundum SS9]
Length = 142
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG+AI A+P L K ++ + ++GL
Sbjct: 4 SRSVLAFDYGTKSIGVAIGQELTGTANPLAALKAKDGIPNWDDIGKILKEWQPDLVVVGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLN+ G E + N I + DERL+TV A+ L + R
Sbjct: 64 PLNLEGGELESITPRAKKFANRIHGRFGCVVELHDERLSTVEAKAELFEHGGYRALSKGN 123
Query: 136 VDSIAAALILQEVLDR 151
+DS +A +IL+ +R
Sbjct: 124 IDSQSAVVILESWFER 139
>gi|148550072|ref|YP_001270174.1| Holliday junction resolvase-like protein [Pseudomonas putida F1]
gi|167036035|ref|YP_001671266.1| Holliday junction resolvase-like protein [Pseudomonas putida GB-1]
gi|325275084|ref|ZP_08141067.1| Holliday junction resolvase-like protein [Pseudomonas sp. TJI-51]
gi|148514130|gb|ABQ80990.1| Holliday junction resolvase YqgF [Pseudomonas putida F1]
gi|166862523|gb|ABZ00931.1| Holliday junction resolvase YqgF [Pseudomonas putida GB-1]
gi|313500972|gb|ADR62338.1| Putative Holliday junction resolvase [Pseudomonas putida BIRD-1]
gi|324099780|gb|EGB97643.1| Holliday junction resolvase-like protein [Pseudomonas sp. TJI-51]
Length = 141
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D G+K+IG+A+ A L + ++ I A ++GLPLNM+
Sbjct: 9 GFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKLIAEWKPDAIVVGLPLNMD 68
Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVD 137
G+ P S RA F + R +P DERLTT A+ + R R VD
Sbjct: 69 GT--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125
Query: 138 SIAAALILQEVLD 150
+IAAAL+LQ L+
Sbjct: 126 AIAAALLLQGWLE 138
>gi|307824756|ref|ZP_07654979.1| Holliday junction resolvase YqgF [Methylobacter tundripaludum SV96]
gi|307734114|gb|EFO04968.1| Holliday junction resolvase YqgF [Methylobacter tundripaludum SV96]
Length = 151
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
D GTK+IG A+ A P +R E++ + E A ++G+
Sbjct: 16 GFDFGTKKIGTAVGQTTTATASPLQ-TIRSINQNPNWEIIGKLIQEWRPAGLVVGISKQA 74
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDS 138
+GS+ P F + R +P DE L+T A+Q+L D ++VS K + D
Sbjct: 75 DGSDNPVTPRMLKFCRQLEGR-YQLPVFQQDETLSTFEAKQLLFDEVSVSASKLWEVQDQ 133
Query: 139 IAAALILQEVLDR 151
+AA LILQ L+
Sbjct: 134 LAAQLILQTWLNE 146
>gi|120556668|ref|YP_961019.1| Holliday junction resolvase YqgF [Marinobacter aquaeolei VT8]
gi|167012734|sp|A1U763|RUVX_MARAV RecName: Full=Putative Holliday junction resolvase
gi|120326517|gb|ABM20832.1| Holliday junction resolvase YqgF [Marinobacter aquaeolei VT8]
Length = 143
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GT+RIG+A P L + ++ + + ++GL
Sbjct: 6 NRRLLAFDFGTRRIGVASGQEMLGTGQPLAMLPARDGIPDWQQIEALLADWQPDIVLVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ +E R F + R +V DERLT+ A+ ++ SR
Sbjct: 66 PLNMDDTENEMCARARKFGKRLHGR-YHVTVEMVDERLTSYEAKGEVMAGGGSRDFGRHG 124
Query: 136 VDSIAAALILQ 146
VD AA LIL+
Sbjct: 125 VDDRAAVLILE 135
>gi|26991673|ref|NP_747098.1| Holliday junction resolvase-like protein [Pseudomonas putida
KT2440]
gi|32130017|sp|Q88D32|RUVX_PSEPK RecName: Full=Putative Holliday junction resolvase
gi|24986772|gb|AAN70562.1|AE016699_3 conserved hypothetical protein TIGR00250 [Pseudomonas putida
KT2440]
Length = 141
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D G+K+IG+A+ A L + ++ I A ++GLPLNM+
Sbjct: 9 GFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKLIAEWKPDAIVVGLPLNMD 68
Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVD 137
G+ P S RA F + R +P DERLTT A+ + R R VD
Sbjct: 69 GT--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125
Query: 138 SIAAALILQEVLD 150
+IAAAL+LQ L+
Sbjct: 126 AIAAALLLQGWLE 138
>gi|225619635|ref|YP_002720892.1| Holliday junction resolvase [Brachyspira hyodysenteriae WA1]
gi|225214454|gb|ACN83188.1| Holliday junction resolvase [Brachyspira hyodysenteriae WA1]
Length = 139
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 3/132 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID G K+ G A D + P + + L+ I +NI + GLPL+
Sbjct: 2 VLGIDFGRKKTGTAFMDMDIKIPFPCRLIEESNARKVKRALMDIIEEKNIDTVVFGLPLS 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G E R F ++ + V V VF DE T+ A IL +K + + D
Sbjct: 62 DEGKESDWCAEIRRFSEFLL-KSVKVDIVFVDEYGTSKEADFIL--RGKKKKVKNKANDL 118
Query: 139 IAAALILQEVLD 150
IAA LIL+ L+
Sbjct: 119 IAATLILENYLN 130
>gi|237746673|ref|ZP_04577153.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS]
gi|229378024|gb|EEO28115.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS]
Length = 133
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D G KRIG AI + + A P + + + E+ I A ++GLP +
Sbjct: 8 ILAFDFGLKRIGCAIGNDLSKSARPLKIIRAEANDKRFAEIGELIVEWQPAKLVVGLPSH 67
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+E R F N + + + + DER T+ +V K Q D+
Sbjct: 68 PDGTEHDMTRRCRRFA-NQLHGRFALDTILVDERYTS----------SVLNFKPGQADDA 116
Query: 139 IAAALILQEVLD 150
AAALILQ+ D
Sbjct: 117 HAAALILQQYFD 128
>gi|242309711|ref|ZP_04808866.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239523712|gb|EEQ63578.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 135
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAH----PRPFLVRKKVTQTALELLSFITTENIAAFI 72
Q I ++D+G KRIG+A +F P P ++RK Q A ++ + I +N +
Sbjct: 2 QNIIALDIGLKRIGIA------QFLQNIPIPLPPILRKNRNQAARDVSNLIQMKNPQILV 55
Query: 73 IGLPLNMNGSEGPRVHSTRAFVH--NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
IG+P + + S + R H N+++ + F DE ++ A Q + + K
Sbjct: 56 IGIPQDGDSS----LEMERRIKHFINLLEIPKGIEICFIDESFSSFEALQKM-QGSKKNK 110
Query: 131 KRIQKVDSIAAALILQEVL 149
K+ +DS+AA +IL+ L
Sbjct: 111 KKDGSLDSLAALIILERYL 129
>gi|167920174|ref|ZP_02507265.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
BCC215]
Length = 146
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 7/140 (5%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+L + + + D G KRIG+A+ + R A + Q + I A
Sbjct: 4 ALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREQRFKAVGELIAEWKPDAL 63
Query: 72 IIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLPL+ +G+ P + RA N ++ + +P + DER ++V A+ L +R
Sbjct: 64 VVGLPLHPDGA--PHEMTQRAMRFGNQLNGRFNLPVSWVDERYSSVEARAGL----RARG 117
Query: 131 KRIQKVDSIAAALILQEVLD 150
+VD+ AA +ILQ+ LD
Sbjct: 118 DAADRVDAEAARVILQQYLD 137
>gi|319760386|ref|YP_004124324.1| hypothetical protein BVAF_252 [Candidatus Blochmannia vafer str.
BVAF]
gi|318039100|gb|ADV33650.1| conserved hypothetical protein [Candidatus Blochmannia vafer str.
BVAF]
Length = 146
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 30/148 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT----TENIA----- 69
I + D GTK IG+A+ G++ T T+L +L I +NI
Sbjct: 7 IMAFDFGTKNIGVAV---GQKLT----------CTTTSLNVLHSIAGTPDWKNIELMYNE 53
Query: 70 ----AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I+GLPL ++GSE ++ F + K +DER TT+ A+ +
Sbjct: 54 WKPKTLIVGLPLQIDGSEQYITILSKKFAIQL-KNKFNTTVEMYDERFTTLEARSNFYNQ 112
Query: 126 NVSR---KKRIQKVDSIAAALILQEVLD 150
S+ K + K+DSIAA +IL+ L+
Sbjct: 113 YCSKFSEKIKKNKIDSIAAEIILKSWLN 140
>gi|148242101|ref|YP_001227258.1| putative Holliday junction resolvase [Synechococcus sp. RCC307]
gi|147850411|emb|CAK27905.1| Putative Holliday junction resolvase [Synechococcus sp. RCC307]
Length = 151
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G +RIGLA DP P P L R + Q +L + A ++GLPL+
Sbjct: 12 VLALDVGRRRIGLAGCDPLGLSVTPLPALQRGRFHQDLEQLKPLVEQRRCLALVVGLPLD 71
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+G+ P+ R + + + + +P + +E ++ +A +
Sbjct: 72 PDGAFTPQAEHCRRYGERLA-QSLSLPVAWVNEHSSSWAAAE 112
>gi|315127641|ref|YP_004069644.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp.
SM9913]
gi|315016155|gb|ADT69493.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp.
SM9913]
Length = 149
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 45/170 (26%)
Query: 11 KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
K++KP + + D GTK IG+AI +++T +A L + + I
Sbjct: 4 KTVKPQGERTVMGFDFGTKSIGIAIG---------------QELTGSATSLKAVKAQDGI 48
Query: 69 AAF---------------IIGLPLNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWD 110
+ ++GLPLNM+G+ + F +HN V+ D
Sbjct: 49 PNWDDIAVQVKEWQPDLMVVGLPLNMDGTSQEVTFKAKKFANRLHNHYGIAVHTQ----D 104
Query: 111 ERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
ERLTT A+ L + + VD+++A +IL+ SF E+S G
Sbjct: 105 ERLTTADAKARLFERGGYKNLGKGNVDNMSAVIILE------SFFEASYG 148
>gi|33519715|ref|NP_878547.1| Holliday junction resolvase-like protein [Candidatus Blochmannia
floridanus]
gi|62901014|sp|Q7VRG7|RUVX_BLOFL RecName: Full=Putative Holliday junction resolvase
gi|33504060|emb|CAD83321.1| putative endonuclease involved in recombination [Candidatus
Blochmannia floridanus]
Length = 142
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 34/150 (22%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELL-------SFITTENI- 68
I + D GTK+IG+AI +K+T T +LE+L ++ E+I
Sbjct: 8 IMAFDFGTKKIGIAIG---------------QKITGTTQSLEILPSKFGIPNWKKIEHIF 52
Query: 69 -----AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122
I+GLPL MNG+ ++ F + R K+ V DER TT+ A+ I
Sbjct: 53 NVWKPNKLIVGLPLKMNGNTQHITLLSKRFAVQLTHRFKITVEMH--DERFTTIEARSIY 110
Query: 123 ID-MNVSRKKRIQKVDSIAAALILQEVLDR 151
+K+ +DSIAA +IL+ L++
Sbjct: 111 FQHFRYYYRKKTTPIDSIAAEIILKSWLNQ 140
>gi|292490363|ref|YP_003525802.1| Holliday junction resolvase YqgF [Nitrosococcus halophilus Nc4]
gi|291578958|gb|ADE13415.1| Holliday junction resolvase YqgF [Nitrosococcus halophilus Nc4]
Length = 147
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G ++IG+A+ A P L + + I I+GLPLN
Sbjct: 16 VFGFDFGMRQIGVAVGQEVTHSATPLTTLKARDGKPNWDLVTRLIEQWRPDLLIVGLPLN 75
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILIDMNVSRKKRIQKVD 137
M+ SE + R F + + R Y V W DERL+T+ A++ L ++ S R ++D
Sbjct: 76 MDQSEQLLTQAARRFGNRLHGR--YGLAVEWVDERLSTIEARERL-NLKPSSLGRHPELD 132
Query: 138 SIAAALILQEVL 149
+AA ILQ L
Sbjct: 133 QVAAQCILQTWL 144
>gi|71909503|ref|YP_287090.1| Holliday junction resolvase-like protein [Dechloromonas aromatica
RCB]
gi|146325566|sp|Q478W1|RUVX_DECAR RecName: Full=Putative Holliday junction resolvase
gi|71849124|gb|AAZ48620.1| Holliday junction resolvase YqgF [Dechloromonas aromatica RCB]
Length = 146
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G KRIG+A + AHP + + + + ++GLP +
Sbjct: 4 VLAFDFGEKRIGVATGETMLCSAHPLTTIHAESNEDRFAAIGKLVAEWQPEQLVVGLPTH 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+ F + R+ +P F DERLT++ A+ L + + K +D+
Sbjct: 64 ADGTPHEMTRLATKFGERLA-RRFNLPVSFADERLTSLDAEARLRETGRNSKSAKPLLDA 122
Query: 139 IAAALILQ 146
+AA LILQ
Sbjct: 123 VAAQLILQ 130
>gi|223039680|ref|ZP_03609966.1| conserved hypothetical protein [Campylobacter rectus RM3267]
gi|222879063|gb|EEF14158.1| conserved hypothetical protein [Campylobacter rectus RM3267]
Length = 124
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 21/136 (15%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID+G KRIG+A++ R+ P+ ++RK Q A ++ + + ++G+PL
Sbjct: 3 IMAIDVGLKRIGVALAV--RQTVMPQTPVLRKNRNQAARDVSAVLREYGAKKLVVGVPLG 60
Query: 79 MNGSEGPRVHSTRAFVHNMI-----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GP R + + + D +V V+ DE +++ A +I + +R
Sbjct: 61 -----GPSEDEMRRRIEHFVSLLEFDGEV----VYQDEAMSSFEASEIY-----AESRRD 106
Query: 134 QKVDSIAAALILQEVL 149
++DSIAA +IL+ L
Sbjct: 107 GRLDSIAAMIILKRYL 122
>gi|119470543|ref|ZP_01613246.1| Holliday junction resolvase-like protein [Alteromonadales bacterium
TW-7]
gi|119446244|gb|EAW27521.1| Holliday junction resolvase-like protein [Alteromonadales bacterium
TW-7]
Length = 149
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 39/167 (23%)
Query: 11 KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
++ KP + + D GTK IG+A+ +++T +A L + + I
Sbjct: 4 RTFKPQGERTVMGFDFGTKSIGIAVG---------------QELTGSASSLKAVKAQDGI 48
Query: 69 AAF---------------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERL 113
+ ++GLPLNM+G+ + F N + +P DERL
Sbjct: 49 PNWDHIAVQVNEWQPDLMVVGLPLNMDGTSQEVTFKAKKFA-NRLHNHYGIPVQTQDERL 107
Query: 114 TTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
TT A+ L + + VD+++A +IL+ SF ES G
Sbjct: 108 TTADAKARLFEQGGYKNLGKGNVDNMSAVIILE------SFFESFYG 148
>gi|167012774|sp|Q4A632|RUVX_MYCS5 RecName: Full=Putative Holliday junction resolvase
gi|144575088|gb|AAZ43789.2| conserved hypothetical protein [Mycoplasma synoviae 53]
Length = 137
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 22 IDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID G RIG AISD F+ F + ++ F+ I FIIG PLN
Sbjct: 6 IDFGLSRIGFAISDESNSFSLALENFDYDGSYEKIIQKIQLFLDEYKIDKFIIGYPLNSR 65
Query: 81 GSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
G + F+ ++ D+K+ + +E ++ A +IL N+ KK+ K D
Sbjct: 66 GEKTKTCLLIDEFIIHLEKNFDQKIKLI----NESYSSRKASEILHQANIKNKKQKDKKD 121
Query: 138 SIAAALILQEVLD 150
+AA +ILQ+ LD
Sbjct: 122 MLAAKIILQDYLD 134
>gi|193214622|ref|YP_001995821.1| Holliday junction resolvase YqgF [Chloroherpeton thalassium ATCC
35110]
gi|193088099|gb|ACF13374.1| Holliday junction resolvase YqgF [Chloroherpeton thalassium ATCC
35110]
Length = 143
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 10/146 (6%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
DL+K + + +ID GTKR GLA +DP + F+ + + E+ +
Sbjct: 4 DLIK-----KRVLAIDFGTKRCGLAKTDPFQLFSQTVGTFEEATLYKQIREIEKL---DG 55
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I ++G P N +GS + F+ + +P DE ++ +A ++LI
Sbjct: 56 IEKILVGYPTNGDGSANHTTKAVDGFLERLSLEFSTIPIEPIDEFGSSKAAMRLLIASGE 115
Query: 128 SRKKRIQK--VDSIAAALILQEVLDR 151
RK R +K +DS AAAL+LQ L+R
Sbjct: 116 KRKSRQKKGRLDSAAAALLLQNYLER 141
>gi|291277337|ref|YP_003517109.1| Holliday junction resolvase [Helicobacter mustelae 12198]
gi|290964531|emb|CBG40384.1| Putative Holliday junction resolvase [Helicobacter mustelae 12198]
Length = 131
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D+G KRIG+A G P ++R Q A +L + +N I+G+P + N
Sbjct: 3 ACDIGLKRIGIAGLIEG--IILPMEPILRTNRNQAASDLSKLLKEKNAHTLIVGIPQSGN 60
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VD 137
+ R F ++++ + +V +E T++ A+Q L + R++ QK +D
Sbjct: 61 AEDTKR---RIMFFVSLLETSAKILYV--NEDCTSLEARQDLSHLKKQRRQNAQKNGRID 115
Query: 138 SIAAALILQEVLDR 151
S+AA ILQ L +
Sbjct: 116 SLAACKILQRYLQK 129
>gi|255022230|ref|ZP_05294225.1| Putative Holliday junction resolvase [Acidithiobacillus caldus ATCC
51756]
gi|254968321|gb|EET25888.1| Putative Holliday junction resolvase [Acidithiobacillus caldus ATCC
51756]
Length = 148
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 15/146 (10%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAH----PRPF--LVRKKVTQTALELL 60
ED +S P ID G++RIGLAI AH PRP + L
Sbjct: 3 EDPAQSA--TGPWLGIDYGSRRIGLAI------LAHLDIAPRPLGTVANGGGGPDWPALE 54
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ A ++GL +G+E R F + R +P ++ DERL++V+A
Sbjct: 55 KVLAQWAPVACVVGLTARADGTESAVARGARHFAAALSQR-YGLPILWQDERLSSVTAAV 113
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQ 146
L + + ++++ +D +AA IL+
Sbjct: 114 RLREASPRKRRQRLALDPLAACEILR 139
>gi|90412043|ref|ZP_01220050.1| Holliday junction resolvase-like protein [Photobacterium profundum
3TCK]
gi|90327021|gb|EAS43400.1| Holliday junction resolvase-like protein [Photobacterium profundum
3TCK]
Length = 142
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG+AI A+P L K ++ + ++GL
Sbjct: 4 SRSVLAFDYGTKSIGVAIGQELTGTANPLAALKAKDGIPNWDDIGKILKEWQPDLVVVGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL++ G E + N I + DERL+TV A+ L + R
Sbjct: 64 PLDLEGGELESITPRAKKFANRIHGRFGCVVELHDERLSTVEAKADLFERGGYRSLSKGN 123
Query: 136 VDSIAAALILQEVLDR 151
+DS +A +IL+ +R
Sbjct: 124 IDSQSAVVILESWFER 139
>gi|329904540|ref|ZP_08273847.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium
IMCC9480]
gi|327547934|gb|EGF32683.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium
IMCC9480]
Length = 135
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 11/134 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D G KRIG+A+ + R A + + + + A I+G+P
Sbjct: 2 ETVLGFDFGLKRIGVAVGNTVIRQAQALTIIDAATNDAKFAAIAVLVASWQPARCIVGMP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+E R F N + + +P V DER T+ V ++R +++
Sbjct: 62 FHPDGAEHEMSVRCRRFA-NQLHGRYGLPTVLVDERYTSA----------VLGQQRGERI 110
Query: 137 DSIAAALILQEVLD 150
D AAALILQ+ D
Sbjct: 111 DDRAAALILQQYFD 124
>gi|53720302|ref|YP_109288.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
K96243]
gi|53725988|ref|YP_103583.1| Holliday junction resolvase-like protein [Burkholderia mallei ATCC
23344]
gi|67643857|ref|ZP_00442600.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|76810774|ref|YP_334541.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
1710b]
gi|121599348|ref|YP_992257.1| Holliday junction resolvase-like protein [Burkholderia mallei
SAVP1]
gi|124385182|ref|YP_001028699.1| Holliday junction resolvase-like protein [Burkholderia mallei NCTC
10229]
gi|126450272|ref|YP_001081395.1| Holliday junction resolvase-like protein [Burkholderia mallei NCTC
10247]
gi|126454156|ref|YP_001067385.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
1106a]
gi|134280355|ref|ZP_01767066.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
gi|167000842|ref|ZP_02266647.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
gi|167720880|ref|ZP_02404116.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
DM98]
gi|167739861|ref|ZP_02412635.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
14]
gi|167817082|ref|ZP_02448762.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
91]
gi|167825492|ref|ZP_02456963.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
9]
gi|167846983|ref|ZP_02472491.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
B7210]
gi|167895564|ref|ZP_02482966.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
7894]
gi|167903961|ref|ZP_02491166.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
NCTC 13177]
gi|167912213|ref|ZP_02499304.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
112]
gi|217420341|ref|ZP_03451846.1| RNAse YqgF [Burkholderia pseudomallei 576]
gi|226193850|ref|ZP_03789452.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
Pakistan 9]
gi|242316862|ref|ZP_04815878.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1106b]
gi|254175582|ref|ZP_04882242.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
10399]
gi|254180908|ref|ZP_04887506.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1655]
gi|254191753|ref|ZP_04898256.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
Pasteur 52237]
gi|254196116|ref|ZP_04902541.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
S13]
gi|254202273|ref|ZP_04908636.1| conserved hypothetical protein [Burkholderia mallei FMH]
gi|254207606|ref|ZP_04913956.1| conserved hypothetical protein [Burkholderia mallei JHU]
gi|254260688|ref|ZP_04951742.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1710a]
gi|254298979|ref|ZP_04966429.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
406e]
gi|254356492|ref|ZP_04972768.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
gi|62900955|sp|Q62I87|RUVX_BURMA RecName: Full=Putative Holliday junction resolvase
gi|62900957|sp|Q63RI0|RUVX_BURPS RecName: Full=Putative Holliday junction resolvase
gi|146325556|sp|Q3JPG2|RUVX_BURP1 RecName: Full=Putative Holliday junction resolvase
gi|167012701|sp|A3MMA9|RUVX_BURM7 RecName: Full=Putative Holliday junction resolvase
gi|167012702|sp|A2S9T0|RUVX_BURM9 RecName: Full=Putative Holliday junction resolvase
gi|167012703|sp|A1V204|RUVX_BURMS RecName: Full=Putative Holliday junction resolvase
gi|167012704|sp|A3NYG4|RUVX_BURP0 RecName: Full=Putative Holliday junction resolvase
gi|52210716|emb|CAH36700.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|52429411|gb|AAU50004.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
23344]
gi|76580227|gb|ABA49702.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1710b]
gi|121228158|gb|ABM50676.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei
SAVP1]
gi|124293202|gb|ABN02471.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei NCTC
10229]
gi|126227798|gb|ABN91338.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1106a]
gi|126243142|gb|ABO06235.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei NCTC
10247]
gi|134248362|gb|EBA48445.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
gi|147746520|gb|EDK53597.1| conserved hypothetical protein [Burkholderia mallei FMH]
gi|147751500|gb|EDK58567.1| conserved hypothetical protein [Burkholderia mallei JHU]
gi|148025489|gb|EDK83643.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
gi|157808954|gb|EDO86124.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
406e]
gi|157939424|gb|EDO95094.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
Pasteur 52237]
gi|160696626|gb|EDP86596.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
10399]
gi|169652860|gb|EDS85553.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
S13]
gi|184211447|gb|EDU08490.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1655]
gi|217395753|gb|EEC35770.1| RNAse YqgF [Burkholderia pseudomallei 576]
gi|225934155|gb|EEH30140.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
Pakistan 9]
gi|238525304|gb|EEP88732.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|242140101|gb|EES26503.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1106b]
gi|243063272|gb|EES45458.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
gi|254219377|gb|EET08761.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1710a]
Length = 146
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIA 69
+L + + + D G KRIG+A+ + R A R ++ + + + + I
Sbjct: 4 ALSRDATLLAFDYGEKRIGVAVGNLLTRTA--RALVIVRNLNREHRFKAVGELIAEWKPD 61
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ P + RA N ++ + +P + DER ++V A+ L +
Sbjct: 62 ALVVGLPLHPDGA--PHEMTQRAMRFGNQLNGRFNLPVSWVDERYSSVEARAGL----RA 115
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
R +VD+ AA +ILQ+ LD
Sbjct: 116 RGDAADRVDAEAARVILQQYLD 137
>gi|261414429|ref|YP_003248112.1| Holliday junction resolvase YqgF [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261370885|gb|ACX73630.1| Holliday junction resolvase YqgF [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 134
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D G R+G+A D + A R + +K T L + I F++G+P + +
Sbjct: 2 ALDYGEHRVGVAFGDSELKMAFSRE-TIDQKTTNLFERLDQLVRLNKIDEFVVGMPYHPD 60
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-VDSI 139
G + + AF+ ++ R + DE ++V AQ+ M+ +K++ + +D
Sbjct: 61 GRKDGKNVVVEAFIKDLTLRFPGMKIHTQDESYSSVQAQEFTSYMSKKKKQKNKAIIDRT 120
Query: 140 AAALILQEVLD 150
AAA+ILQ D
Sbjct: 121 AAAIILQRWFD 131
>gi|317970100|ref|ZP_07971490.1| putative Holliday junction resolvase [Synechococcus sp. CB0205]
Length = 167
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ S+D+G KRIGLA DP P P L R + +L + + I A ++GLPL+
Sbjct: 9 VLSLDVGRKRIGLAGCDPLGLTVKPLPALHRGRYPADLQQLQALVRERRILALVVGLPLD 68
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ R + + R + +P F +E ++ A +
Sbjct: 69 AQQQPTAQAEHCRRYGERLA-RDLDLPLAFVNEYASSWDAGE 109
>gi|257460557|ref|ZP_05625658.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
gi|257441888|gb|EEV17030.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
Length = 130
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +IDLG KRIG+A + P + P ++RK TQ A EL + + + ++G+P
Sbjct: 2 IVAIDLGLKRIGVAAA-PDDKTPLPCEPILRKNRTQAARELSELLREKGASVLVLGVPRG 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
SE R F +++D + F DE ++ A + K + DS
Sbjct: 61 -GASEEEMSRRIRHFA-SLLDFDGEIK--FQDESFSSAEAAEFASKCAKGGGKD-PRFDS 115
Query: 139 IAAALILQEVL 149
IAA +ILQ L
Sbjct: 116 IAATIILQRFL 126
>gi|113955356|ref|YP_730921.1| endonuclease [Synechococcus sp. CC9311]
gi|113882707|gb|ABI47665.1| Predicted endonuclease [Synechococcus sp. CC9311]
Length = 158
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+D+G KRIGLA D P P L+R+ Q L T + ++GLPL+
Sbjct: 10 SLDVGRKRIGLAGCDALGITVSPLPALLRRAFKQDLGHLEQVCLTRRVQGLVVGLPLDAA 69
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G + + + + + +P +E ++ +A + + R R+ DS A
Sbjct: 70 GQFTEQAAHCQRYGQRLA-MALKLPLALVNEHSSSWAAAE-RYGLQGDRSGRL---DSAA 124
Query: 141 AALILQEVL 149
A+L+L++ L
Sbjct: 125 ASLLLEQWL 133
>gi|78184360|ref|YP_376795.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9902]
gi|146325619|sp|Q3AYS6|RUVX_SYNS9 RecName: Full=Putative Holliday junction resolvase
gi|78168654|gb|ABB25751.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9902]
Length = 164
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ S+D+G KRIGLA DP P P L R + L L T ++ ++GLPL+
Sbjct: 14 VLSLDVGRKRIGLAGCDPLGITVSPLPALHRGRFDNDLLVLRHHCQTRSVQGLVVGLPLD 73
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
G + R + + + + +P + +E +T +A +
Sbjct: 74 AAGQPTAQAEHCRRYGVRLA-QSLGLPLAWVNEHSSTWAAGE 114
>gi|237813515|ref|YP_002897966.1| hypothetical protein GBP346_A3291 [Burkholderia pseudomallei
MSHR346]
gi|237503558|gb|ACQ95876.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
Length = 146
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIA 69
+L + + + D G KRIG+A+ + R A R ++ + + + + + I
Sbjct: 4 ALSRDATLLAFDYGEKRIGVAVGNLLTRTA--RALVIVRNLNREHRFKAVGALIAEWKPD 61
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ P + RA N ++ + +P + DER ++V A+ L +
Sbjct: 62 ALVVGLPLHPDGA--PHEMTQRAMRFGNQLNGRFNLPVSWVDERYSSVEARAGL----RA 115
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
R ++D+ AA +ILQ+ LD
Sbjct: 116 RGDAADRIDAEAARVILQQYLD 137
>gi|300870810|ref|YP_003785681.1| Holliday junction resolvase-like protein [Brachyspira pilosicoli
95/1000]
gi|300688509|gb|ADK31180.1| holliday junction resolvase-like protein [Brachyspira pilosicoli
95/1000]
Length = 137
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G K+ G A D + P + + L+ I + I + GLPL+
Sbjct: 3 ILAVDFGRKKTGTAFMDMNIKIPFPCKLIEESNARKVKRALMDIIEEKKIDTVVFGLPLS 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G E R F ++ + V V VF DE T+ A IL + + + D
Sbjct: 63 DEGKESEWCAEIRRFSEFLL-KSVKVNIVFVDEYGTSKEADFIL--RGKKKSVKKKANDL 119
Query: 139 IAAALILQEVLD 150
IAA LIL+ L+
Sbjct: 120 IAAVLILENYLN 131
>gi|71892031|ref|YP_277761.1| putative endonuclease involved in recombination [Candidatus
Blochmannia pennsylvanicus str. BPEN]
gi|146325553|sp|Q493F4|RUVX_BLOPB RecName: Full=Putative Holliday junction resolvase
gi|71796137|gb|AAZ40888.1| putative endonuclease involved in recombination [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 144
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK IG+AI A P L + + T F++GLPL
Sbjct: 10 VMGFDFGTKHIGVAIGQKLTCTAQPLTVLQSQSGVPNWKRIRDIYNTWKPMIFVVGLPLK 69
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDM---NVSRKKRIQ 134
++GSE P + F + ++++ VP DER +T A+ ++ + I
Sbjct: 70 IDGSEQPITILAKIFAIQL--KELFPVPVKMHDERFSTSEARLNYFKYYHDDLCARSNI- 126
Query: 135 KVDSIAAALILQEVLDR 151
K+++IAA +IL+ L++
Sbjct: 127 KINAIAAGVILKSWLNK 143
>gi|301633655|gb|ADK87209.1| RNAse H domain protein, YqgF family [Mycoplasma pneumoniae FH]
Length = 140
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN--IAAFII 73
Q I ID G KRIG A+++ RF P R F V+ + Q L + + +I
Sbjct: 2 QYILGIDFGLKRIGTALANTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIVI 61
Query: 74 GLP-LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
G P + S +H FV +I + VP DE TT + L ++ + +
Sbjct: 62 GFPHFHYQSSIQVSIHK---FVE-LIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTF 117
Query: 133 IQKVDSIAAALILQEVLDR 151
+ D++AA LIL+ L++
Sbjct: 118 KKAKDTLAATLILERFLNQ 136
>gi|224373180|ref|YP_002607552.1| Holliday junction resolvase-like protein [Nautilia profundicola
AmH]
gi|223588874|gb|ACM92610.1| conserved hypothetical protein [Nautilia profundicola AmH]
Length = 130
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 19/137 (13%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I ID+G KRIG+A S+ P P ++RK Q A + + I ++GLP
Sbjct: 2 EKIIGIDVGLKRIGVAFSNGS--VVVPLPAIIRKNRNQAANDTMKIINEYKADTLVVGLP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPF----VFWDERLTTVSAQQILIDMNVSRKKR 132
L N R+ R FV +PF VF DE T+ ++ + V + K+
Sbjct: 60 L-TNEEMQRRI---RHFVS-------LLPFEGKIVFVDESYTSAEVEEEI--KGVIKHKK 106
Query: 133 IQKVDSIAAALILQEVL 149
++DS+ A +++ L
Sbjct: 107 DGRIDSLVAKKLIENYL 123
>gi|126441995|ref|YP_001060123.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
668]
gi|167012705|sp|A3NCQ2|RUVX_BURP6 RecName: Full=Putative Holliday junction resolvase
gi|126221488|gb|ABN84994.1| RNAse YqgF [Burkholderia pseudomallei 668]
Length = 146
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIA 69
+L + + + D G KRIG+A+ + R A R ++ + + + + I
Sbjct: 4 ALSRDATLLAFDYGEKRIGVAVGNLLTRTA--RALVIVRNLNREHRFKAVGELIAEWKPD 61
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ P + RA N ++ + +P + DER ++V A+ L +
Sbjct: 62 ALVVGLPLHPDGA--PHEMTQRAMRFGNQLNGRFNLPVNWVDERYSSVEARAGL----RA 115
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
R +VD+ AA +ILQ+ LD
Sbjct: 116 RGDAADRVDAEAARVILQQYLD 137
>gi|297844086|ref|XP_002889924.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335766|gb|EFH66183.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 238
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLPLNM 79
+DLG R G+AIS + +P V K Q LL E + FIIGLP +
Sbjct: 69 GVDLGLSRTGVAIS----KGYTVKPLTVLKSRGQKLETRLLEIAEEEEVDEFIIGLPRSS 124
Query: 80 NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+G E + + R+ + + + +VF DE TT A +I M +S+ +R +
Sbjct: 125 DGKETIQSNKIRSVAGRLAVQAAERGWRVYVF-DEHGTTSEASDRMIVMGLSKSERQNRS 183
Query: 137 DSIAAALILQ 146
D+ AA ++L+
Sbjct: 184 DAYAAVILLE 193
>gi|254821811|ref|ZP_05226812.1| Holliday junction resolvase-like protein [Mycobacterium
intracellulare ATCC 13950]
Length = 250
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G+ RIG+A SDP A P + R + + L + ++GLP +
Sbjct: 26 GVDVGSVRIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVVVGLPRTLA 85
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
GP + DR P DERLTTVSAQ+ L V K+
Sbjct: 86 DRTGPSAIDAIELADALADRVAPTPVRLADERLTTVSAQRSLRAAGVRAKE 136
>gi|220936072|ref|YP_002514971.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. HL-EbGR7]
gi|219997382|gb|ACL73984.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. HL-EbGR7]
Length = 163
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 5/130 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D G +RIG+A+ P + + L ++ ++G PLN++
Sbjct: 22 GLDYGGRRIGVAVGSRESGSGSPLGAVSNRDDGPDWAALDRWVREWRPDVLVVGQPLNLD 81
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS--RKKRIQK--V 136
G+ P + F + +R +P DER ++ A++ L + S R +++QK +
Sbjct: 82 GTPHPLAPRIQRFCEQLTERYT-LPVARVDERFSSFDAEERLREARASGRRGRKVQKGDI 140
Query: 137 DSIAAALILQ 146
D+++AA++L
Sbjct: 141 DALSAAILLD 150
>gi|331001274|ref|ZP_08324900.1| RNAse H domain protein, YqgF family [Parasutterella
excrementihominis YIT 11859]
gi|329569001|gb|EGG50797.1| RNAse H domain protein, YqgF family [Parasutterella
excrementihominis YIT 11859]
Length = 150
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G KRIG+A+ + + A P + KK Q E+ ++ AA ++G+P +
Sbjct: 16 VIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVLSDWQPAAVVVGVPRH 75
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+G F N ++ + +P V DER ++V A+
Sbjct: 76 KDGKPNDMTPICERFA-NQVEGRYGIPVVREDERYSSVEAE 115
>gi|104783977|ref|YP_610475.1| Holliday junction resolvase-like protein [Pseudomonas entomophila
L48]
gi|95112964|emb|CAK17692.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 141
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D G+K+IG+A+ A L + ++ I A ++GLPLNM+
Sbjct: 9 GFDYGSKQIGVAVGQVITGQARELCVLKAQNGVPDWNQVEKLIKEWKPDAIVVGLPLNMD 68
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVDSI 139
G+ F + R +P DERLTT A+ + + R VD+I
Sbjct: 69 GTPSDMSERAEKFARRLNGR-YNLPVHTHDERLTTFEAKGEQMARGGRHGSYRDNPVDAI 127
Query: 140 AAALILQEVLD 150
AAAL+LQ L+
Sbjct: 128 AAALLLQGWLE 138
>gi|303256218|ref|ZP_07342234.1| putative Holliday junction resolvase [Burkholderiales bacterium
1_1_47]
gi|302860947|gb|EFL84022.1| putative Holliday junction resolvase [Burkholderiales bacterium
1_1_47]
Length = 144
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G KRIG+A+ + + A P + KK Q E+ ++ AA ++G+P +
Sbjct: 10 VIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVLSDWQPAAVVVGVPRH 69
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+G F N ++ + +P V DER ++V A+
Sbjct: 70 KDGKPNDMTPICERFA-NQVEGRYGIPVVREDERYSSVEAE 109
>gi|124023439|ref|YP_001017746.1| endonuclease [Prochlorococcus marinus str. MIT 9303]
gi|123963725|gb|ABM78481.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. MIT 9303]
Length = 214
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 9 LVKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
L+ + KP + I S+DLG +RIGLA DP P P L RK + L T+
Sbjct: 53 LMTATKPRPKSILSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFDRDLKALQRHCTSRK 112
Query: 68 IAAFIIGLPLNMNG 81
+ ++GLPL+ G
Sbjct: 113 VEGLVVGLPLDSKG 126
>gi|269468190|gb|EEZ79886.1| Holliday junction resolvase YqgF [uncultured SUP05 cluster
bacterium]
Length = 140
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGL 75
Q D+GTKR G+AI++ A + K + E I+ ++ FI+GL
Sbjct: 3 QTYLGFDVGTKRTGVAIANSLTSQATGIDVVKNHKDGSSNWEGFDQIISAHSVDLFIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P N +GSE ++F + +++ + DE L++ A+ L +
Sbjct: 63 PFNKDGSEQEMTFIAKSFARKL-EKRYQIKTELIDEYLSSNEAKNQLKYNHYHPNAERSD 121
Query: 136 VDSIAAALILQEVLDR 151
VD +A LILQ L+
Sbjct: 122 VDKRSAQLILQTWLNE 137
>gi|321310987|ref|YP_004193316.1| holliday junction resolvase YqgF [Mycoplasma haemofelis str.
Langford 1]
gi|319802831|emb|CBY93477.1| holliday junction resolvase YqgF [Mycoplasma haemofelis str.
Langford 1]
Length = 143
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 19/144 (13%)
Query: 19 IASIDLGTKRIGLAISDPGR---------RFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ S+D+GTK++G+A+S + RF + + + +K+ EL +F E I
Sbjct: 3 VLSLDIGTKKVGIALSSADQSLIFPVGKIRFDNFKGLIFFEKLKT---ELRNF--WEEIG 57
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
+IG SEG V S V M+ F E +++ + L +N S
Sbjct: 58 VAVIG-----KASEGNSVLSQIDQVSRMLKAWTDWDIKFISEDMSSSDSWSFLKSLNFSS 112
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
K +K+DS +A +IL++ D I+
Sbjct: 113 NKAREKLDSYSALIILKDYFDSIN 136
>gi|119713535|gb|ABL97588.1| hypothetical protein MBMO_EB0-35D03.0051 [uncultured marine
bacterium EB0_35D03]
Length = 142
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
D+GTKR G+AI++ A L K + +L I FI+G+PL+
Sbjct: 8 GFDVGTKRTGIAIANSLTSHASGIETILHNKDGSTNWAQLEKTINKHQPDKFIVGMPLDK 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ E R+F + +++ +F DE L++ A++ L + VD
Sbjct: 68 DNKEQEMTFIARSFGRKL-EKRFDKEVIFIDEYLSSSEAKKQLKWHYAHKNADRGDVDKR 126
Query: 140 AAALILQEVLDRISF 154
+A LILQ L+ ++
Sbjct: 127 SAKLILQTWLNETTY 141
>gi|302871987|ref|YP_003840623.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis
OB47]
gi|302574846|gb|ADL42637.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis
OB47]
Length = 172
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL- 77
I +D+G R+G+AISDP + A P + K EL T NI +IG PL
Sbjct: 3 ILCLDIGNSRVGVAISDPLKITAQP-LMTIELKNKDLFDELDKIFHTYNIEKVVIGYPLS 61
Query: 78 ----NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKR 132
++ + ++ + + I + V V WDER +T + ++++ ++N +++R
Sbjct: 62 KLHPDLKDEKLKKIDE----ISSRIGSRYNVEIVKWDERFSTKAVERVMNEELNWKKRRR 117
>gi|33598438|ref|NP_886081.1| hypothetical protein BPP3931 [Bordetella parapertussis 12822]
gi|33603378|ref|NP_890938.1| hypothetical protein BB4404 [Bordetella bronchiseptica RB50]
gi|62901016|sp|Q7W3U6|RUVX_BORPA RecName: Full=Putative Holliday junction resolvase
gi|62901017|sp|Q7WF76|RUVX_BORBR RecName: Full=Putative Holliday junction resolvase
gi|33574567|emb|CAE39214.1| conserved hypothetical protein [Bordetella parapertussis]
gi|33577502|emb|CAE34767.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 133
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + R A P + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122
LPL ++G E P R F + + R + V V DER +++ AQQ+L
Sbjct: 62 LPLTLDGQEQPASARARRFANQLHGRFGLAVELV--DERGSSMEAQQLL 108
>gi|307103880|gb|EFN52137.1| hypothetical protein CHLNCDRAFT_139266 [Chlorella variabilis]
Length = 227
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPF-----LVRKKVTQTALELLSFITTENIAAFIIGL 75
+D G + +GLA+S G PRP + + Q A +L+ E A ++GL
Sbjct: 32 GLDYGRRVVGLAVSTLG---LAPRPLEGLPGPLAHEQLQLAAAVLAVAQREACDAIVLGL 88
Query: 76 PLNMNGS------EGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
P+ + GS + + R F NM + +P DER +T++A+++L
Sbjct: 89 PVTLAGSLRRRSTDSQQGRRCRNFADNMAAVAAPHAIPVFLADERGSTLAARRLLASSGS 148
Query: 128 SRKKRIQKVDSIAAALILQ 146
R +++DS+AAA+IL+
Sbjct: 149 RRSTLSKRMDSVAAAVILE 167
>gi|149911576|ref|ZP_01900189.1| Holliday junction resolvase-like protein [Moritella sp. PE36]
gi|149805355|gb|EDM65367.1| Holliday junction resolvase-like protein [Moritella sp. PE36]
Length = 148
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 37/155 (23%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
D GTK IG+A+ +++T TA L++F + I +
Sbjct: 13 GFDFGTKSIGIAVG---------------QEITGTARPLVAFKANDGIPDWDLIEKQIKE 57
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I+G PLNM+G+E F + + R V DERLTT A+ L +
Sbjct: 58 WQPDLVIVGKPLNMDGTEQEITKRATKFANRLTGR-FNVKTEMHDERLTTKDAKARLFEE 116
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ + +DS +A +IL+ S++E+ G
Sbjct: 117 GGFKALQKGAIDSASAMVILE------SWMEAQYG 145
>gi|33591551|ref|NP_879195.1| hypothetical protein BP0320 [Bordetella pertussis Tohama I]
gi|62901015|sp|Q7W045|RUVX_BORPE RecName: Full=Putative Holliday junction resolvase
gi|33571193|emb|CAE40697.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332380951|gb|AEE65798.1| hypothetical protein BPTD_0315 [Bordetella pertussis CS]
Length = 133
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + R A P + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
LPL ++G E P R F N + + DER +++ AQQ+L
Sbjct: 62 LPLTLDGQEQPASARARRFA-NQLHGHFGLAVELVDERSSSMEAQQLL 108
>gi|73540412|ref|YP_294932.1| Holliday junction resolvase-like protein [Ralstonia eutropha
JMP134]
gi|146325595|sp|Q474U5|RUVX_RALEJ RecName: Full=Putative Holliday junction resolvase
gi|72117825|gb|AAZ60088.1| Holliday junction resolvase YqgF [Ralstonia eutropha JMP134]
Length = 141
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ L + + + D G K+IG+A+ + R A L V + I
Sbjct: 7 RELPRDGTVLAFDYGEKKIGVALGNFVTRHATALTILPNVSVEGRFQAVGELIREWTPVQ 66
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++G+P+N G E P + R F N ++ + +P + DER ++ A M +R+
Sbjct: 67 LVVGMPVNPEGGEQPSMRLARRF-GNQLNGRYSLPVEWVDERYSSRMAA-----MGGARR 120
Query: 131 KRIQKVDSIAAALILQEVLDRI 152
++D+ AA +ILQ+ D++
Sbjct: 121 G---ELDAEAARIILQQYFDQL 139
>gi|13508157|ref|NP_110106.1| hypothetical protein MPN419 [Mycoplasma pneumoniae M129]
gi|11135617|sp|P57114|RUVX_MYCPN RecName: Full=Putative Holliday junction resolvase
gi|11379549|gb|AAG34748.1|AE000041_6 conserved hypothetical protein [Mycoplasma pneumoniae M129]
Length = 140
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTEN--IAAFII 73
Q I ID G KRIG A+ + RF P R F V+ + Q L + + +I
Sbjct: 2 QYILGIDFGLKRIGTALVNTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIVI 61
Query: 74 GLP-LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
G P + S +H FV +I + VP DE TT + L ++ + +
Sbjct: 62 GFPHFHYQSSIQVSIHK---FVE-LIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTF 117
Query: 133 IQKVDSIAAALILQEVLDR 151
+ D++AA LIL+ L++
Sbjct: 118 KKAKDTLAATLILERFLNQ 136
>gi|328907451|gb|EGG27217.1| RNAse YqgF [Propionibacterium sp. P08]
Length = 134
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
I+GLP+ +NG+E R + + +P + DER+TT +A + L D + +
Sbjct: 39 VIMGLPVALNGTEQLAARDIRDAGRQLAEAISPIPVRWVDERMTTRTAARALHDAGRNAR 98
Query: 131 KRIQKVDSIAAALILQEVLDRI 152
++ +D AA IL++VL+++
Sbjct: 99 QQRGVIDQAAAVAILEDVLEQV 120
>gi|153951394|ref|YP_001398406.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. doylei 269.97]
gi|167012708|sp|A7H4H6|RUVX_CAMJD RecName: Full=Putative Holliday junction resolvase
gi|152938840|gb|ABS43581.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. doylei 269.97]
Length = 129
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 5 ALDIGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62
Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
SE + FV + D+++ F DE T+ A + I + +K+ K+DS+
Sbjct: 63 SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKKALEYGI---ANTRKKDGKLDSL 115
Query: 140 AAALILQE 147
AA +++++
Sbjct: 116 AAFIMIKD 123
>gi|78776727|ref|YP_393042.1| Holliday junction resolvase-like protein [Sulfurimonas
denitrificans DSM 1251]
gi|146325623|sp|Q30T74|RUVX_SULDN RecName: Full=Putative Holliday junction resolvase
gi|78497267|gb|ABB43807.1| Holliday junction resolvase YqgF [Sulfurimonas denitrificans DSM
1251]
Length = 130
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+IDLG KRIGLA S + P + RK Q A ++ + + A ++G+PL
Sbjct: 5 AIDLGLKRIGLAYS-AHKDLVTPLKAVERKNRDQAARDVKKTLIEWEVDAVVVGIPL--G 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFW-DERLTTVSAQQILI-DMNVSRKKRIQKVDS 138
GS + A N++ + +F+ DE +++ A+ ++ ++ R RI DS
Sbjct: 62 GSSEDEMRRRVAHFMNLV---AFEGEIFYQDESNSSIEAESMMRGEIKYIRDGRI---DS 115
Query: 139 IAAALILQEVL 149
I+A +ILQ L
Sbjct: 116 ISAMIILQRYL 126
>gi|224012605|ref|XP_002294955.1| Hypothetical protein THAPSDRAFT_264879 [Thalassiosira pseudonana
CCMP1335]
gi|220969394|gb|EED87735.1| Hypothetical protein THAPSDRAFT_264879 [Thalassiosira pseudonana
CCMP1335]
Length = 423
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID----RKVYVPFV-FWDERL 113
++++ +E + ++GLPL+ NGS + TR F + ++ R Y V WDER
Sbjct: 238 IINYAISEQVTNLVLGLPLHKNGSISEQSLITRQFGYELLQTVRTRMGYNANVTLWDERY 297
Query: 114 TTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
T+ A ++ ++R +RI + AL
Sbjct: 298 TSKEAASRIVGEAIARNRRIPSASDLNGAL 327
>gi|149376907|ref|ZP_01894662.1| Exodeoxyribonuclease III xth [Marinobacter algicola DG893]
gi|149358799|gb|EDM47268.1| Exodeoxyribonuclease III xth [Marinobacter algicola DG893]
Length = 137
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 1/126 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GT+RIG+A P L + ++ + ++GLPLNM+
Sbjct: 2 AFDFGTRRIGVASGQEMLGTGKPLTMLPARDGVPDWDQIGRLLKEWQPDRVLVGLPLNMD 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
+E R F + R +V DERLT+ A+ ++ SR VD A
Sbjct: 62 DTENDMCARARKFGKRLHGR-FHVEVEMVDERLTSFEAKGDVMASGGSRDFGRDGVDDRA 120
Query: 141 AALILQ 146
A LIL+
Sbjct: 121 AVLILE 126
>gi|302877381|ref|YP_003845945.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans
ES-2]
gi|302580170|gb|ADL54181.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans
ES-2]
Length = 170
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GT+RIG+A+ + A P + +K + + A ++GLP + +
Sbjct: 21 AFDFGTQRIGVAVGNTFSSSAEPLTTIAEEKNELRFSAITKLVAEWQPCALVVGLPCSDD 80
Query: 81 GSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
GS H A R + + + DER ++++A + L V + + +D
Sbjct: 81 GSP----HELTALCQRFAKRLHGRYGLTTLLVDERYSSLAASEQLNRQGVRGRDQKALID 136
Query: 138 SIAAALILQEVLDR 151
AA ILQ D
Sbjct: 137 QYAAQQILQAYFDE 150
>gi|56807333|ref|ZP_00365334.1| COG0816: Predicted endonuclease involved in recombination
(possible Holliday junction resolvase in Mycoplasmas
and B. subtilis) [Streptococcus pyogenes M49 591]
Length = 83
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPLN 78
+D+G+K +G+AISDP A + +K L + + F+IGLP N
Sbjct: 2 GLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPKN 61
Query: 79 MNGSEGPRVHSTRAF 93
MN + GPRV ++ +
Sbjct: 62 MNNTNGPRVDASITY 76
>gi|134095903|ref|YP_001100978.1| putative holliday junction resolvase [Herminiimonas arsenicoxydans]
gi|133739806|emb|CAL62857.1| Putative holliday junction resolvase [Herminiimonas arsenicoxydans]
Length = 131
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D G KRIG+A+ + + A P + + +T A I+GLP
Sbjct: 2 ETVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVTQWQPALCIVGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+E R F N + + V V DER ++ V +R +
Sbjct: 62 RHPDGAEHEMTVRCRRFA-NQLHGRFDVATVLVDERYSSA----------VISHQRGDLI 110
Query: 137 DSIAAALILQEVLD 150
D AAA+ILQ+ D
Sbjct: 111 DDQAAAIILQQYFD 124
>gi|254796406|ref|YP_003081242.1| hypothetical protein NRI_0006 [Neorickettsia risticii str.
Illinois]
gi|254589643|gb|ACT69005.1| conserved hypothetical protein [Neorickettsia risticii str.
Illinois]
Length = 159
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I SID G + IG+A+SDP R+ A ++ ++ + + I+G P +
Sbjct: 18 IVSIDPGKRTIGVAVSDPELRYIQNYFQFASHGRGADASYIMKVVS--DFSGIIVGTPFS 75
Query: 79 MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ G +HS F + I +K P + DE +T +L ++ SR+K+ +
Sbjct: 76 HIRNNG-WLHSIDKFAQKLSEITKK---PILMCDESSSTSDVMVLLGSLSRSRQKKWK-- 129
Query: 137 DSIAAALILQEVLDRI 152
D IAA IL++ L I
Sbjct: 130 DKIAACCILEKTLCTI 145
>gi|332295476|ref|YP_004437399.1| Holliday junction resolvase [Thermodesulfobium narugense DSM 14796]
gi|332178579|gb|AEE14268.1| Holliday junction resolvase [Thermodesulfobium narugense DSM 14796]
Length = 140
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 70/142 (49%), Gaps = 15/142 (10%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID G +GL+ISDP + P + R + ++ I +++ A ++G PL +
Sbjct: 5 GIDWGVTHLGLSISDPEEKIVFPLGTITRTTWDKDLNKIKQIIEEKSVEAIVLGDPLRTD 64
Query: 81 GSEGPRVHSTRAFVHNMIDRK---VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
S S+++ + + +K + V + +DER +++ A ++ + K K+
Sbjct: 65 FSSA----SSKSILK--VKKKLETIGVKVILFDERYSSIEALKL---QKILGNKDKGKIH 115
Query: 138 SIAAALILQEVLDRISFLESSK 159
IA++++L+ LD FL ++K
Sbjct: 116 EIASSIVLKSFLD---FLSNTK 134
>gi|319442137|ref|ZP_07991293.1| Holliday junction resolvase-like protein [Corynebacterium variabile
DSM 44702]
Length = 178
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-----QTALELLSFITTENIAAFIIGL 75
+D+GT RIG+++SDP A P + K + + +L I + ++GL
Sbjct: 29 GLDVGTVRIGVSLSDPDGILATPLETVQADKTSGAWPGEEFDHVLELIAENFVVEVVVGL 88
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+++ + + + + +P DER++T++A + V++KK +
Sbjct: 89 PVSLRSHRTRSTRRAENYA-TRLRKNLDIPVRLVDERMSTMAATNAMHASGVNQKKGRSR 147
Query: 136 VDSIAAALILQEVLD 150
+D AA ILQ LD
Sbjct: 148 IDQAAAVHILQGWLD 162
>gi|331005506|ref|ZP_08328884.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC1989]
gi|330420698|gb|EGG94986.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC1989]
Length = 139
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLPLNM+ SE R F + R V F DERL+T A+Q
Sbjct: 58 VVGLPLNMDDSESELCARARKFGRRLHGR-FSVDVEFMDERLSTFDAKQEAKARGHKGNY 116
Query: 132 RIQKVDSIAAALILQ 146
+ +DSIAA LIL+
Sbjct: 117 KQNPIDSIAARLILE 131
>gi|33862799|ref|NP_894359.1| hypothetical protein PMT0526 [Prochlorococcus marinus str. MIT
9313]
gi|62901010|sp|Q7V847|RUVX_PROMM RecName: Full=Putative Holliday junction resolvase
gi|33634715|emb|CAE20701.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 161
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+DLG +RIGLA DP P P L RK + L T+ + ++GLPL+
Sbjct: 13 SLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFERDLKVLQWHCTSRKVEGLVVGLPLDAK 72
Query: 81 G 81
G
Sbjct: 73 G 73
>gi|239917772|ref|YP_002957330.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
gi|281413734|ref|ZP_06245476.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
gi|239838979|gb|ACS30776.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
Length = 189
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFIIGLPLNM 79
+D+G R+G+A +DP A P L R + + EL++ ++ A +GLP+N+
Sbjct: 38 GVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDELVAHARELDVVAVYVGLPVNL 97
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQIL 122
G P + + VP DERL+TVSAQ L
Sbjct: 98 RGEHTPSTQDALDYADAVAAALAEAGHPVPLRLVDERLSTVSAQAGL 144
>gi|89074104|ref|ZP_01160603.1| Holliday junction resolvase-like protein [Photobacterium sp. SKA34]
gi|89050040|gb|EAR55566.1| Holliday junction resolvase-like protein [Photobacterium sp. SKA34]
Length = 143
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ ++ + D GTK IG+AI A P L K ++ + +
Sbjct: 1 MSQSRSVLGFDYGTKSIGVAIGQELTGIATPLAALKAKDGIPNWDDIEKILKEWLPDLVV 60
Query: 73 IGLPLNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+GLPL++ G E PR +H +V + DERL+TV A+ L +
Sbjct: 61 VGLPLDLKGKELESITPRAKKFANRLHGRFGCQVELH----DERLSTVEAKAELFERGGY 116
Query: 129 RKKRIQKVDSIAAALILQEVLDR 151
R +DS +A +IL+ +R
Sbjct: 117 RSLSKGNIDSQSAVVILESWFER 139
>gi|33240317|ref|NP_875259.1| endonuclease [Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|62901011|sp|Q7VC75|RUVX_PROMA RecName: Full=Putative Holliday junction resolvase
gi|33237844|gb|AAP99911.1| Predicted endonuclease [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 153
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLP 76
+ S D G KRIGLA DP G P + + Q L L+ + E I I+GLP
Sbjct: 9 VLSFDYGHKRIGLAGCDPLGITVTALSP--IHRISFQKDLTLIKSLCIEREIKGLIVGLP 66
Query: 77 LNMNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
L+ +G V S + + I +++ +P + +E ++ A Q N+ + R K
Sbjct: 67 LDESGQN--TVQSIHCQNYGIKIAKELDLPLAWVNEHSSSWDAGQ---KYNL-QNDRTGK 120
Query: 136 VDSIAAALILQEVL 149
+DS AAL+L++ L
Sbjct: 121 LDSAVAALLLEQWL 134
>gi|86151561|ref|ZP_01069775.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315124150|ref|YP_004066154.1| hypothetical protein ICDCCJ07001_581 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|85841190|gb|EAQ58438.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315017872|gb|ADT65965.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 127
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 5 ALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62
Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
SE + FV + D+++ F DE T+ A + I +K+ K+DS+
Sbjct: 63 SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALEYGI---ADTRKKDGKLDSL 115
Query: 140 AAALILQE 147
AA +++++
Sbjct: 116 AAFIMIKD 123
>gi|320534358|ref|ZP_08034845.1| conserved hypothetical protein TIGR00250 [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133440|gb|EFW25901.1| conserved hypothetical protein TIGR00250 [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 129
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 66 ENIAAF--IIGLPLNMNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQ 120
E AF I+GLP +M G RA+ ++ + R+V V V DERLTTV+A +
Sbjct: 21 EEYGAFEVIVGLPKHMGGGSSSSTRDARAWARDLASRLPRQVCVRLV--DERLTTVTAHR 78
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVL 149
L + + VD AA +IL++ +
Sbjct: 79 DLHAAGMKERSFRGIVDQAAAVVILEQAI 107
>gi|90580288|ref|ZP_01236095.1| Holliday junction resolvase-like protein [Vibrio angustum S14]
gi|90438590|gb|EAS63774.1| Holliday junction resolvase-like protein [Vibrio angustum S14]
Length = 143
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ ++ + D GTK IG+AI A P L K ++ + +
Sbjct: 1 MSQSRSVLGFDYGTKSIGVAIGQELTGTATPLAALKAKDGIPNWDDIEKILKEWLPDLVV 60
Query: 73 IGLPLNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+GLPL++ G E PR +H +V + DERL+TV A+ L +
Sbjct: 61 VGLPLDLEGKELESITPRAKKFANRLHGRFGYQVELH----DERLSTVEAKAELFERGGY 116
Query: 129 RKKRIQKVDSIAAALILQEVLDR 151
R +DS +A +IL+ +R
Sbjct: 117 RSLSKGNIDSQSAVVILESWFER 139
>gi|152981739|ref|YP_001354639.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille]
gi|151281816|gb|ABR90226.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille]
Length = 131
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 11/141 (7%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D G KRIG+A+ + + A P + + + A I+GLP
Sbjct: 2 ETVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVQQWQPALCIVGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G E R F N + + V V DER ++ V +R + +
Sbjct: 62 RHPDGEEHEMTVRCRRFA-NQLHGRFNVATVLVDERYSSA----------VISHQRGELI 110
Query: 137 DSIAAALILQEVLDRISFLES 157
D AAA+ILQ+ D + ES
Sbjct: 111 DDQAAAIILQQYFDDYTQSES 131
>gi|161833711|ref|YP_001597907.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri GWSS]
gi|189046110|sp|A8Z5W0|RUVX_SULMW RecName: Full=Putative Holliday junction resolvase
gi|152206201|gb|ABS30511.1| conserved hypothetical Holliday junction resolvase-like protein
[Candidatus Sulcia muelleri GWSS]
Length = 138
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID G KRIGL+I++ R A + + T + L + E+I +IGLP+
Sbjct: 4 ILCIDYGKKRIGLSITNSIRSIAFGLDTVNSNNIICTLYKYLKY---EDIDTIVIGLPIR 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID--MNVSRKKRIQKV 136
+ S P + F+ + ++ + DER T+ A LI+ + +++ K+ Q
Sbjct: 61 FDNSLFPIEKDIKKFIKIINNKYPKLIIKRIDERFTSKIANYYLINTRLKINQLKKNQNF 120
Query: 137 ---DSIAAALILQEVL 149
D I+A ++LQE +
Sbjct: 121 LDKDKISATILLQEYI 136
>gi|167841114|ref|ZP_02467798.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis MSMB43]
Length = 146
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 11/142 (7%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR---PFLVRKKVTQTALELLSFITTENI 68
+L + + + D G KRIG+AI + R A P L R+ + EL++ +
Sbjct: 4 ALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKPD-- 61
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ + F N ++ + +P + DER ++V A+ +
Sbjct: 62 -ALVVGLPLHPDGAPHEMTQRAKRF-GNQLNGRFNLPVSWVDERYSSVEARA----GLRA 115
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
R +VD+ AA +ILQ+ LD
Sbjct: 116 RGAAADRVDAEAARVILQQYLD 137
>gi|293977821|ref|YP_003543251.1| hypothetical protein DMIN_00920 [Candidatus Sulcia muelleri DMIN]
gi|292667752|gb|ADE35387.1| conserved hypothetical protein [Candidatus Sulcia muelleri DMIN]
Length = 138
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID G KRIGL+I++ R A + + T + L + E+I +IGLP+
Sbjct: 4 ILCIDYGKKRIGLSITNSIRSIAFGLDTVNSNNIICTLYKYLKY---EDIDTIVIGLPIR 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-----NVSRKKRI 133
+ S P + F+ + ++ + DER T+ A LI+ + + K
Sbjct: 61 FDNSLFPIEKDIKKFIKIINNKYPKLIIKRIDERFTSKIANYYLINTRLKINQLKKNKNF 120
Query: 134 QKVDSIAAALILQEVL 149
D I+A ++LQE +
Sbjct: 121 LDKDKISATILLQEYI 136
>gi|331697329|ref|YP_004333568.1| Holliday junction resolvase [Pseudonocardia dioxanivorans CB1190]
gi|326952018|gb|AEA25715.1| Holliday junction resolvase [Pseudonocardia dioxanivorans CB1190]
Length = 149
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFIIG 74
ID+G R+G+A+SDP A P + R + E+ + + ++ I+G
Sbjct: 11 GIDVGAVRVGVALSDPDGMLATPLVTVARDLREAGDRSGSDLREIAALVAEHDVVQVIVG 70
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + G+EGP + RAF +++ + VP DERLTTV A + L + V K++
Sbjct: 71 LPRTLAGAEGPAAAAARAFADDLV-AVLDVPVELSDERLTTVVATRQLRERGVKGKRQRA 129
Query: 135 KVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 130 VVDQAAAVAILQGWLD 145
>gi|237750752|ref|ZP_04581232.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter
bilis ATCC 43879]
gi|229373842|gb|EEO24233.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter
bilis ATCC 43879]
Length = 160
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 29/160 (18%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA----AFIIG 74
I ID G KR+G+A + P ++RK Q + +L + + ++G
Sbjct: 3 IFGIDFGLKRLGVA--KVVQNIIVPLAPIMRKNRNQASKDLANLLLAHESDMSKITLVVG 60
Query: 75 LPL-----------NMNGSEGPRVHSTRAFVHNMIDRKV-----YVPF----VFWDERLT 114
+P N+N G + S RA H ++ +++ + F ++ DE +
Sbjct: 61 MPRDMDIDDVDTESNLNIESGLDIESNRAGRHEVMQKRISHFLNLIDFSGQVIYIDESYS 120
Query: 115 TVSAQQILIDMNVSRKKRIQK---VDSIAAALILQEVLDR 151
+ A + L+D +++K +K +DSI+A +IL+ L+R
Sbjct: 121 SKEANERLLDRGYNKRKNARKNGVLDSISACVILERYLER 160
>gi|269101817|ref|ZP_06154514.1| putative Holliday junction resolvase [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268161715|gb|EEZ40211.1| putative Holliday junction resolvase [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 141
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 8/142 (5%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ ++ + + D GTK IG+AI A P L + + + + +
Sbjct: 1 MSQSRTVLAFDYGTKSIGVAIGQEITGTAQPLKALKARDGIPSWEAIEQILKEWQPDLVV 60
Query: 73 IGLPLNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+GLPL+M+G E PR +H +V + DERL+T A+ L +
Sbjct: 61 VGLPLDMSGHELETITPRAKKFANRLHGRFGCQVELH----DERLSTAEARAELFEFGGY 116
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
R +DS +A +IL+ +
Sbjct: 117 RNLSKGNIDSQSAVVILESWFE 138
>gi|262273737|ref|ZP_06051550.1| putative Holliday junction resolvase [Grimontia hollisae CIP
101886]
gi|262222152|gb|EEY73464.1| putative Holliday junction resolvase [Grimontia hollisae CIP
101886]
Length = 143
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D GTK IG+AI A P L K + + + + ++GLP
Sbjct: 5 QTVLGFDYGTKSIGVAIGQAITGTARPLKALKAKDGIPSWEAIEAILKEWAPDLVVVGLP 64
Query: 77 LNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
L+++G E PR R F N + + V DERLTT A+ L + +
Sbjct: 65 LDLHGGELETITPRA---RKFA-NRLKGRFGVNVELHDERLTTTEARASLFEYGGYKALG 120
Query: 133 IQKVDSIAAALILQEVLD 150
++DS +A +I++ +
Sbjct: 121 KGEIDSQSAVIIVESWFE 138
>gi|25091669|sp|Q8K930|RUVX_BUCAP RecName: Full=Putative Holliday junction resolvase
gi|21623442|gb|AAM68071.1| hypothetical 15.2 kDa protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 137
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G K IG+A+ + + L K + + + + ++GLPLN
Sbjct: 3 VIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G+ F ++ K + DERL+T A+ ++ N + + +K+ S
Sbjct: 63 IDGTRQDITKKAEKFAF-LLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHS 121
Query: 139 IAAALILQEVLDR 151
+AA +IL+ ++
Sbjct: 122 VAAVIILESWFNQ 134
>gi|255321388|ref|ZP_05362548.1| conserved hypothetical protein [Campylobacter showae RM3277]
gi|255301541|gb|EET80798.1| conserved hypothetical protein [Campylobacter showae RM3277]
Length = 124
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID+G KRIG+A++ + P+ ++RK Q A ++ + + ++G+PL
Sbjct: 3 IMAIDVGLKRIGVALAVG--QTVMPQTPVLRKNRNQAARDVSTVLREYGAKKLVVGVPLG 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ + R R H + + V+ DE +++ A +I + +R ++DS
Sbjct: 61 GSSEDEMR----RRIAHFVSLLEFDGEVVYQDEAMSSFEASEIY-----AEGRRDGRLDS 111
Query: 139 IAAALILQEVL 149
IAA ++L+ L
Sbjct: 112 IAAMIVLKRYL 122
>gi|149193947|ref|ZP_01871045.1| Holliday junction resolvase-like protein [Caminibacter
mediatlanticus TB-2]
gi|149135900|gb|EDM24378.1| Holliday junction resolvase-like protein [Caminibacter
mediatlanticus TB-2]
Length = 130
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I +ID+G KRIG+A + P P ++RK Q A E+ + + ++G+P
Sbjct: 2 ERIIAIDVGLKRIGIAYT-PNASVVVPLNAIIRKNRNQAAKEVSNLLKEYKADILVVGIP 60
Query: 77 LNMNGSEGPRV-HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
N R+ H T N+ID + FV DE T+ ++ + + KR +
Sbjct: 61 -KTNEEMTKRIKHFT-----NLIDFNGKIEFV--DESFTSAIVEEEI--KGKIKHKRDGR 110
Query: 136 VDSIAAALILQEVL 149
+DS+AA IL+ L
Sbjct: 111 IDSLAAKKILESFL 124
>gi|30410827|ref|NP_660860.2| hypothetical protein BUsg530 [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 148
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G K IG+A+ + + L K + + + + ++GLPLN
Sbjct: 14 VIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLN 73
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G+ F ++ K + DERL+T A+ ++ N + + +K+ S
Sbjct: 74 IDGTRQDITKKAEKFAF-LLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHS 132
Query: 139 IAAALILQEVLDR 151
+AA +IL+ ++
Sbjct: 133 VAAVIILESWFNQ 145
>gi|163785754|ref|ZP_02180259.1| hypothetical protein HG1285_07148 [Hydrogenivirga sp. 128-5-R1-1]
gi|159878979|gb|EDP72978.1| hypothetical protein HG1285_07148 [Hydrogenivirga sp. 128-5-R1-1]
Length = 79
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLP+ + G EG + TR FV + + + VF DER T+ A++
Sbjct: 24 VVGLPITLKGEEGEQARKTRKFVEKLKEHIPDIQIVFEDERFTSQMAEK 72
>gi|21232178|ref|NP_638095.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|66767693|ref|YP_242455.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. campestris str. 8004]
gi|32130039|sp|Q8P766|RUVX_XANCP RecName: Full=Putative Holliday junction resolvase
gi|81306327|sp|Q4UWY8|RUVX_XANC8 RecName: Full=Putative Holliday junction resolvase
gi|21113933|gb|AAM42019.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573025|gb|AAY48435.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 155
Score = 41.2 bits (95), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 12/145 (8%)
Query: 12 SLKPNQPIASIDLGTKRIGLAIS---DPGRRFAHPRPFLVRKKVTQTALELLSFITTE-N 67
+++P+ + D+G++RIG+A+ G R ++ L + E
Sbjct: 6 AIRPDATVLGFDVGSRRIGVAVGTALGAGARAV----AVINVHANGPDWVALDRVHKEWR 61
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
A ++G PL ++ + P AF + +R +P V DER ++V A Q
Sbjct: 62 PAGLVVGDPLTLDDKDQPARKRAHAFARELRERYA-LPVVLIDERSSSVEAAQRFARERA 120
Query: 128 SRKKR---IQKVDSIAAALILQEVL 149
+KR +D++AAA+I++ L
Sbjct: 121 DGRKRRRDADTLDAMAAAVIVERWL 145
>gi|330446902|ref|ZP_08310553.1| uncharacterised family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491093|dbj|GAA05050.1| uncharacterised family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 142
Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ ++ + D GTK IG+AI A P + + + +
Sbjct: 1 MSQSRTVLGFDYGTKSIGVAIGQELTGTATPLAAIKANDGVPNWDNIEKLLKEWQPNLVV 60
Query: 73 IGLPLNMNGSE----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+GLPL++ G E PR VH +V + DERL+TV A+ L +
Sbjct: 61 VGLPLDLEGKELETITPRAKKFANRVHGRFGCQVELH----DERLSTVEARAELFERGGY 116
Query: 129 RKKRIQKVDSIAAALILQEVLDR 151
R +DS +A +IL+ +R
Sbjct: 117 RSLSKGNIDSQSAVVILESWFER 139
>gi|312797107|ref|YP_004030029.1| hypothetical protein RBRH_01480 [Burkholderia rhizoxinica HKI 454]
gi|312168882|emb|CBW75885.1| Hypothetical cytosolic protein [Burkholderia rhizoxinica HKI 454]
Length = 146
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+AI + R A + + + I ++GLP++ +
Sbjct: 10 AFDYGHKRIGVAIGNTLTRCARALTTVENRNREYRFAAVGELIGQWQPLRLVVGLPVHPD 69
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G+ R F N ++ + +P + DER ++V+A+ V VD+ A
Sbjct: 70 GAPHEMTRQARRF-GNQLNGRFNLPVTWVDERYSSVAAEAAGARGAV--------VDAQA 120
Query: 141 AALILQEVLDRISF 154
A +ILQ+ D S+
Sbjct: 121 ACIILQQYFDEQSY 134
>gi|12045147|ref|NP_072958.1| hypothetical protein MG_505 [Mycoplasma genitalium G37]
gi|6226357|sp|Q9ZB76|RUVX_MYCGE RecName: Full=Putative Holliday junction resolvase
gi|3844876|gb|AAC71518.1| conserved hypothetical protein [Mycoplasma genitalium G37]
gi|166078883|gb|ABY79501.1| conserved hypothetical protein [synthetic Mycoplasma genitalium
JCVI-1.0]
Length = 138
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTEN----IAA 70
+ I +ID G K+IG AI++ ++ P F V K +TA+ L F+ +N +
Sbjct: 2 KYILAIDFGLKKIGTAIANTLDKY--PSAFHVFEVKNNFKTAVNNL-FLRIKNDGYELEK 58
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
+IG P S+ + + ++F +++++ +P + DE TT + + LI M++ K
Sbjct: 59 IVIGFPKFHYYSDIQK--AIKSF-KQLLEKRFNLPIILVDESNTTSAVKDKLITMDLKHK 115
Query: 131 KRIQKVDSIAAALILQ 146
+ D++AA LIL+
Sbjct: 116 DFKKAKDTLAAVLILE 131
>gi|15838818|ref|NP_299506.1| Holliday junction resolvase-like protein [Xylella fastidiosa 9a5c]
gi|9107376|gb|AAF85026.1|AE004035_5 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 155
Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 4/138 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + D+GT+RIG+A+ A + V L ++G
Sbjct: 9 PDGIVLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKK 131
PL + G + P +AF + +R +P V DER ++V A + R++
Sbjct: 69 DPLTLEGHDQPIRKQAQAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127
Query: 132 RIQKVDSIAAALILQEVL 149
+D+IAAA+IL+ L
Sbjct: 128 DADTLDAIAAAVILERWL 145
>gi|254515815|ref|ZP_05127875.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
NOR5-3]
gi|219675537|gb|EED31903.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
NOR5-3]
Length = 142
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 3/132 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G +IG+A+ + P L + E+ ++G PLN
Sbjct: 10 VLAFDYGLSQIGVAVGNSDLGTTQPLSILRARDGQPNWAEVTELCQEWQPDLLLVGDPLN 69
Query: 79 MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
M+G+ R F + R + V V DERL++ +Q + R VD
Sbjct: 70 MDGTVSEFAQRARKFARRLEGRLGLSVEMV--DERLSSFEVKQQQKEAGHRGDYREHPVD 127
Query: 138 SIAAALILQEVL 149
+AA LIL++ L
Sbjct: 128 DLAAELILRDWL 139
>gi|283956049|ref|ZP_06373536.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792369|gb|EFC31151.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
jejuni 1336]
Length = 127
Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 5 ALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62
Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
SE + FV + D+++ F DE T+ A + + +K+ K+DS+
Sbjct: 63 SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALGYGV---ANTRKKDGKLDSL 115
Query: 140 AAALILQE 147
AA +++++
Sbjct: 116 AAFIMIKD 123
>gi|319942918|ref|ZP_08017201.1| crossover junction endodeoxyribonuclease [Lautropia mirabilis ATCC
51599]
gi|319743460|gb|EFV95864.1| crossover junction endodeoxyribonuclease [Lautropia mirabilis ATCC
51599]
Length = 156
Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + + D G KRIG+A+ + A P L + + + + ++G P
Sbjct: 11 QTLLAFDFGQKRIGVAVGNSLTGAARPLATLTEQTTDGRFARIQTLLKEWQPTGLVVGRP 70
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQILIDMN------- 126
L+ +G+ H A R + +P DER ++V+AQ+ + D +
Sbjct: 71 LHPDGTP----HEVTALAERFARRLEGRFGLPVFLVDERYSSVAAQERMRDEDDEHVTRG 126
Query: 127 --VSRKKRIQKVDSIAAALILQEVL 149
+ Q D+ AAA+IL++ L
Sbjct: 127 GRRRKGGASQGDDATAAAIILEQYL 151
>gi|317402658|gb|EFV83214.1| hollyday junction resolvase [Achromobacter xylosoxidans C54]
Length = 133
Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + R A P + + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGVAIGNTLTRHARPLEIIFSEVRDVRFARIEALLREWQPHRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
L L+ +G E P R F N + + V DER +++ AQ++L
Sbjct: 62 LALDADGGEQPATARCRRFA-NQLHGRFGVAVELVDERGSSMEAQRLL 108
>gi|157363236|ref|YP_001470003.1| Holliday junction resolvase YqgF [Thermotoga lettingae TMO]
gi|157313840|gb|ABV32939.1| Holliday junction resolvase YqgF [Thermotoga lettingae TMO]
Length = 214
Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 29/142 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G R GLAI G + A + V KK + + + FI F++GLPL+
Sbjct: 2 IVAVDYGDARCGLAI---GEKLAR-KIMTVEKKKVISEISRIPFIN-----CFVVGLPLS 52
Query: 79 MNGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
M+G + F + ++VY+ DERLT+ S K +
Sbjct: 53 MSGRYSQQTFKAIEFAEKLNRRFKKRVYL----IDERLTS------------SIFKNREN 96
Query: 136 VDSIAAALILQE-VLDRISFLE 156
+D + AA I ++ V ++ F E
Sbjct: 97 IDGLCAAEIFEKFVFSKMKFHE 118
>gi|283954083|ref|ZP_06371608.1| hypothetical protein C414_000080073 [Campylobacter jejuni subsp.
jejuni 414]
gi|283794362|gb|EFC33106.1| hypothetical protein C414_000080073 [Campylobacter jejuni subsp.
jejuni 414]
Length = 127
Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 5 ALDVGLKRIGVALC-VDKKIALPLNAVLRKNRNQAASEIKNLLKIHEISLLIVGIP-KGG 62
Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
SE + FV + D+++ F DE T+ A + + + +++ K+DS+
Sbjct: 63 SSEEEMTRRIKHFVSLLEFDKEI----CFIDESGTSKEALKYGV---ANAREKDGKLDSL 115
Query: 140 AAALILQE 147
AA +++++
Sbjct: 116 AAFIMIKD 123
>gi|118475560|ref|YP_892282.1| Holliday junction resolvase-like protein [Campylobacter fetus
subsp. fetus 82-40]
gi|118414786|gb|ABK83206.1| putative Holliday junction resolvase [Campylobacter fetus subsp.
fetus 82-40]
Length = 124
Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID+G KRIG+A++ P L RK Q A + L + +N ++GLP
Sbjct: 2 IVAIDVGLKRIGVAVAVLPTVVLPSEPIL-RKNRNQAAKDTLKMLKEKNATKLVVGLPKG 60
Query: 79 MNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
E + F+ + D ++ ++ DE ++ A ++ S+ + + D
Sbjct: 61 -GSCEDEMERRIKHFISLVGFDSEI----IYVDEAYSSCEASEL------SKDSKDGRFD 109
Query: 138 SIAAALILQEVLD 150
SIAA +IL+ L+
Sbjct: 110 SIAAMVILKRYLN 122
>gi|323498675|ref|ZP_08103666.1| Holliday junction resolvase-like protein [Vibrio sinaloensis DSM
21326]
gi|323316275|gb|EGA69295.1| Holliday junction resolvase-like protein [Vibrio sinaloensis DSM
21326]
Length = 140
Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 36/157 (22%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
I S D GTK IG AI +++T TA L +F + I +
Sbjct: 5 IMSFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDDIEKLI 49
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLP +++G + + N + + +P DERL+T A+ L
Sbjct: 50 KEWQPDLLVVGLPTDLHGRDLETITPRAKKFANRLHGRFGLPVELHDERLSTTEARAELF 109
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+M + VD +A +IL+ S+ E+ G
Sbjct: 110 NMGGYKALSKGNVDCQSAVVILE------SWFETQYG 140
>gi|71274448|ref|ZP_00650736.1| Conserved hypothetical protein 250 [Xylella fastidiosa Dixon]
gi|71898425|ref|ZP_00680597.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
gi|71900444|ref|ZP_00682576.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
gi|170730547|ref|YP_001775980.1| Holliday junction resolvase-like protein [Xylella fastidiosa M12]
gi|226695319|sp|B0U3C1|RUVX_XYLFM RecName: Full=Putative Holliday junction resolvase
gi|71164180|gb|EAO13894.1| Conserved hypothetical protein 250 [Xylella fastidiosa Dixon]
gi|71729809|gb|EAO31908.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
gi|71731738|gb|EAO33797.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
gi|167965340|gb|ACA12350.1| putative Holliday junction resolvase [Xylella fastidiosa M12]
Length = 155
Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + D+GT+RIG+A+ A + V L ++G
Sbjct: 9 PDGIVLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKK 131
PL + G + P AF + +R +P V DER ++V A + R++
Sbjct: 69 DPLTLEGHDQPIRKQAHAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127
Query: 132 RIQKVDSIAAALILQEVL 149
+D+IAAA+IL+ L
Sbjct: 128 DADTLDAIAAAVILERWL 145
>gi|254751374|ref|ZP_05203411.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Vollum]
Length = 75
Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 19 IASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLP 76
I +D+GTK +G+AISD G + ++ Q + +S + ++ ++GLP
Sbjct: 3 ILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGLP 62
Query: 77 LNMNGSEGPRVHS 89
NMNG+ GPR +
Sbjct: 63 KNMNGTIGPRGEA 75
>gi|254508602|ref|ZP_05120718.1| conserved hypothetical protein TIGR00250 [Vibrio parahaemolyticus
16]
gi|219548453|gb|EED25462.1| conserved hypothetical protein TIGR00250 [Vibrio parahaemolyticus
16]
Length = 136
Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 36/155 (23%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
S D GTK IG AI ++VT TA L +F + I +
Sbjct: 2 SFDFGTKSIGSAIG---------------QEVTGTASPLRAFKANDGIPNWDDIEKLIKE 46
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
++GLP +++G + + N + + +P DERL+T A+ L +M
Sbjct: 47 WQPDLLVVGLPTDLHGRDLETITPRAKKFANRLHGRYGLPVELHDERLSTTEARADLFNM 106
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ VD +A +IL+ S+ E+ G
Sbjct: 107 GGYKALSKGNVDCQSAVVILE------SWFEAQWG 135
>gi|284007792|emb|CBA73648.1| holliday junction resolvase [Arsenophonus nasoniae]
Length = 74
Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E P + R F N + + + DERLTT+ A+ L + R K+DS
Sbjct: 1 MDGTEQPISNQARKFA-NRLHGRFGIKVTLHDERLTTIEARAQLFNQGGYRALNKSKIDS 59
Query: 139 IAAALILQEVLDR 151
I+A +IL+ ++
Sbjct: 60 ISAVIILESWFEQ 72
>gi|158604996|gb|ABW74808.1| conserved hypothetical protein [Campylobacter concisus 13826]
Length = 127
Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 21 SIDLGTKRIGLAISDPGRRFAH---PRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ID+G KRIGLA F P ++RK Q A ++ + ++G+P+
Sbjct: 7 AIDVGLKRIGLAFG-----FGEVVTPLEPVLRKNRNQAARDVSQKVNEYAPNTLVVGVPI 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
SE FV +++D + + V+ DE ++ A +I D +R ++D
Sbjct: 62 G-GSSEDEMRRRIEHFV-SLLDMQANI--VYQDEAFSSSEASEIYTDT-----RRDGRLD 112
Query: 138 SIAAALILQEVL 149
S++AA+IL+ L
Sbjct: 113 SVSAAIILKRYL 124
>gi|15807494|ref|NP_296229.1| hypothetical protein DR_2509 [Deinococcus radiodurans R1]
gi|11136112|sp|Q9RRI2|RUVX_DEIRA RecName: Full=Putative Holliday junction resolvase
gi|6460331|gb|AAF12050.1|AE002080_4 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 136
Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+ RIG A+S R A R + RK++ + + ++GLPL
Sbjct: 18 VLALDVSKSRIGFAVS--AGRLAFGRGSVDRKRLPLDLKAVRLKVEETGAERLVLGLPLR 75
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+G P RAF ++D+ V + DER TT A+ +
Sbjct: 76 TDGKPSPTADRVRAFGRVLMDKGYTVE--YQDERFTTQRARAL 116
>gi|83643445|ref|YP_431880.1| endonuclease [Hahella chejuensis KCTC 2396]
gi|146325575|sp|Q2SPG9|RUVX_HAHCH RecName: Full=Putative Holliday junction resolvase
gi|83631488|gb|ABC27455.1| predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Hahella chejuensis KCTC 2396]
Length = 158
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 7/135 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G KR G A+ A P + + + + + A I+G PLN
Sbjct: 4 VVGFDFGLKRFGAAVGQSVSMTASPLKEIPAQDGIPRWEAIEALLEEWKPALVIVGEPLN 63
Query: 79 MNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
M+GS R F +H + +V + DERLT+ A+ ++ + R
Sbjct: 64 MDGSVSEMALRARKFARRLHGRYNLRVEMA----DERLTSSEAKSMVRERYGQRDFGRFA 119
Query: 136 VDSIAAALILQEVLD 150
VDSIAA I++ L+
Sbjct: 120 VDSIAAVFIVESWLE 134
>gi|134301891|ref|YP_001121860.1| hypothetical protein FTW_0892 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|167012726|sp|A4IXT8|RUVX_FRATW RecName: Full=Putative Holliday junction resolvase
gi|134049668|gb|ABO46739.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 136
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVETYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
L+ E S + F V RKV++ +E +T A+ L ++ + I
Sbjct: 63 LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118
Query: 134 QKVDSIAAALILQ 146
KVD++AA +IL+
Sbjct: 119 -KVDALAACVILE 130
>gi|89256536|ref|YP_513898.1| hypothetical protein FTL_1215 [Francisella tularensis subsp.
holarctica LVS]
gi|115314967|ref|YP_763690.1| hypothetical protein FTH_1192 [Francisella tularensis subsp.
holarctica OSU18]
gi|156502651|ref|YP_001428716.1| hypothetical protein FTA_1285 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167010660|ref|ZP_02275591.1| hypothetical protein Ftulh_08094 [Francisella tularensis subsp.
holarctica FSC200]
gi|254367860|ref|ZP_04983880.1| hypothetical protein FTHG_01151 [Francisella tularensis subsp.
holarctica 257]
gi|254369476|ref|ZP_04985488.1| hypothetical protein FTAG_00463 [Francisella tularensis subsp.
holarctica FSC022]
gi|290952899|ref|ZP_06557520.1| putative Holliday junction resolvase [Francisella tularensis subsp.
holarctica URFT1]
gi|295313899|ref|ZP_06804465.1| putative Holliday junction resolvase [Francisella tularensis subsp.
holarctica URFT1]
gi|122325020|sp|Q0BLI1|RUVX_FRATO RecName: Full=Putative Holliday junction resolvase
gi|146325574|sp|Q2A304|RUVX_FRATH RecName: Full=Putative Holliday junction resolvase
gi|167012724|sp|A7NCQ7|RUVX_FRATF RecName: Full=Putative Holliday junction resolvase
gi|89144367|emb|CAJ79654.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica LVS]
gi|115129866|gb|ABI83053.1| crossover junction endodeoxyribonuclease [Francisella tularensis
subsp. holarctica OSU18]
gi|134253670|gb|EBA52764.1| hypothetical protein FTHG_01151 [Francisella tularensis subsp.
holarctica 257]
gi|156253254|gb|ABU61760.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|157122426|gb|EDO66566.1| hypothetical protein FTAG_00463 [Francisella tularensis subsp.
holarctica FSC022]
Length = 136
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
L+ E S + F V RKV++ +E +T A+ L ++ + I
Sbjct: 63 LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118
Query: 134 QKVDSIAAALILQ 146
KVD++AA +IL+
Sbjct: 119 -KVDALAACVILE 130
>gi|57167661|ref|ZP_00366801.1| conserved hypothetical protein TIGR00250 [Campylobacter coli
RM2228]
gi|305433168|ref|ZP_07402324.1| Holliday junction resolvase family protein [Campylobacter coli
JV20]
gi|57020783|gb|EAL57447.1| conserved hypothetical protein TIGR00250 [Campylobacter coli
RM2228]
gi|304443869|gb|EFM36526.1| Holliday junction resolvase family protein [Campylobacter coli
JV20]
Length = 126
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 11/128 (8%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G KRIG+A+ + A P ++RK Q A E+ + + +I+ I+G+P
Sbjct: 5 ALDVGLKRIGVALCID--KIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIP-KGG 61
Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
SE + FV + D+++ F DE T+ A + + +K+ K+DS+
Sbjct: 62 SSEEEMTRRIKHFVSLLEFDKEIR----FVDESGTSKEALGYGV---ANTRKKDAKLDSL 114
Query: 140 AAALILQE 147
AA +++++
Sbjct: 115 AALIMIKD 122
>gi|285018920|ref|YP_003376631.1| holliday junction resolvase [Xanthomonas albilineans GPE PC73]
gi|283474138|emb|CBA16639.1| putative holliday junction resolvase protein [Xanthomonas
albilineans]
Length = 165
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAH-PRPFLVRKKVTQT----ALELLSF 62
D +L+ + + D+G +RIG+A+ G RF R V Q AL+ L
Sbjct: 12 DGAATLRHDGTVLGFDVGHRRIGVAV---GSRFGSGARALAVIDVHAQGPDWPALDRLHA 68
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQI 121
+ ++G PL ++G++ P AF + R +P V DER ++V +AQ+
Sbjct: 69 QWRPH--GLVVGDPLTLDGADQPNRKRAHAFARELGARYC-LPVVLVDERSSSVEAAQRF 125
Query: 122 LIDMNVSRK 130
+D RK
Sbjct: 126 AVDRAAGRK 134
>gi|86153306|ref|ZP_01071510.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|85843032|gb|EAQ60243.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni HB93-13]
Length = 127
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 5 ALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62
Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
SE + FV + D+++ F DE T+ A + + +K+ K+DS+
Sbjct: 63 SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALGYGV---ANTRKKDGKLDSL 115
Query: 140 AAALILQE 147
+A +++++
Sbjct: 116 SAFIMIKD 123
>gi|56708078|ref|YP_169974.1| hypothetical protein FTT_0986 [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670549|ref|YP_667106.1| hypothetical protein FTF0986 [Francisella tularensis subsp.
tularensis FSC198]
gi|224457170|ref|ZP_03665643.1| hypothetical protein FtultM_05530 [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254370563|ref|ZP_04986568.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254874882|ref|ZP_05247592.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|62900911|sp|Q5NG68|RUVX_FRATT RecName: Full=Putative Holliday junction resolvase
gi|118597210|sp|Q14HM0|RUVX_FRAT1 RecName: Full=Putative Holliday junction resolvase
gi|56604570|emb|CAG45619.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320882|emb|CAL09002.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC198]
gi|151568806|gb|EDN34460.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254840881|gb|EET19317.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159278|gb|ADA78669.1| hypothetical protein NE061598_05655 [Francisella tularensis subsp.
tularensis NE061598]
Length = 136
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG++ + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGISSGQMITKTATPIGTVEAYDGVPNWIELDKIIKCWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
L+ E S + F V RKV++ +E +T A+ L ++ + I
Sbjct: 63 LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118
Query: 134 QKVDSIAAALILQ 146
KVD++AA +IL+
Sbjct: 119 -KVDALAACVILE 130
>gi|308369751|ref|ZP_07666800.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis
SUMu002]
gi|308372334|ref|ZP_07428278.2| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis
SUMu004]
gi|308374613|ref|ZP_07667825.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis
SUMu006]
gi|308375552|ref|ZP_07444315.2| hypothetical protein TMGG_02319 [Mycobacterium tuberculosis
SUMu007]
gi|308377049|ref|ZP_07668417.1| hypothetical protein TMHG_01748 [Mycobacterium tuberculosis
SUMu008]
gi|308378414|ref|ZP_07668743.1| hypothetical protein TMIG_03343 [Mycobacterium tuberculosis
SUMu009]
gi|308379237|ref|ZP_07485604.2| hypothetical protein TMJG_01534 [Mycobacterium tuberculosis
SUMu010]
gi|308380399|ref|ZP_07669183.1| hypothetical protein TMKG_02983 [Mycobacterium tuberculosis
SUMu011]
gi|308326527|gb|EFP15378.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis
SUMu002]
gi|308333565|gb|EFP22416.1| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis
SUMu004]
gi|308341258|gb|EFP30109.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis
SUMu006]
gi|308345968|gb|EFP34819.1| hypothetical protein TMGG_02319 [Mycobacterium tuberculosis
SUMu007]
gi|308349065|gb|EFP37916.1| hypothetical protein TMHG_01748 [Mycobacterium tuberculosis
SUMu008]
gi|308352657|gb|EFP41508.1| hypothetical protein TMIG_03343 [Mycobacterium tuberculosis
SUMu009]
gi|308357633|gb|EFP46484.1| hypothetical protein TMJG_01534 [Mycobacterium tuberculosis
SUMu010]
gi|308361575|gb|EFP50426.1| hypothetical protein TMKG_02983 [Mycobacterium tuberculosis
SUMu011]
Length = 122
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 34/80 (42%)
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
I+GLP + G + R P DERLTTVSAQ+ L V
Sbjct: 28 VIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRAS 87
Query: 131 KRIQKVDSIAAALILQEVLD 150
++ +D AA ILQ LD
Sbjct: 88 EQRAVIDQAAAVAILQSWLD 107
>gi|145631446|ref|ZP_01787216.1| Holliday junction resolvase-like protein [Haemophilus influenzae
R3021]
gi|144982983|gb|EDJ90492.1| Holliday junction resolvase-like protein [Haemophilus influenzae
R3021]
Length = 134
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 31/114 (27%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
+ D GTK IG AI + +T TA L +F + I +
Sbjct: 7 AFDFGTKSIGCAIG---------------QSITGTAQALPAFKAQDGIPNWEAIEKCLKE 51
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I+GLPLNM+G+E R F N + + V DERLTT A+
Sbjct: 52 WKPDVVIVGLPLNMDGTEQDLTLRARKFA-NRLQGRFGVNVHLQDERLTTTQAR 104
>gi|311103825|ref|YP_003976678.1| holliday junction resolvase-like protein [Achromobacter
xylosoxidans A8]
gi|310758514|gb|ADP13963.1| holliday junction resolvase-like protein [Achromobacter
xylosoxidans A8]
Length = 133
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + R A P + + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSEVREARFGRIAALLQEWQPHRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
L L+ G E P R F N + + + DER +++ AQ++L
Sbjct: 62 LALDAEGGEQPATARCRRFA-NQLHGRFGLAVELVDERGSSMEAQRLL 108
>gi|57236948|ref|YP_178749.1| Holliday junction resolvase-like protein [Campylobacter jejuni
RM1221]
gi|86149908|ref|ZP_01068137.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|148926622|ref|ZP_01810303.1| hypothetical protein Cj8486_0644 [Campylobacter jejuni subsp.
jejuni CG8486]
gi|157414914|ref|YP_001482170.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni 81116]
gi|205355485|ref|ZP_03222256.1| hypothetical protein Cj8421_0637 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|218562285|ref|YP_002344064.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|11135891|sp|Q9PHN2|RUVX_CAMJE RecName: Full=Putative Holliday junction resolvase
gi|62900905|sp|Q5HVD6|RUVX_CAMJR RecName: Full=Putative Holliday junction resolvase
gi|172047089|sp|A8FL56|RUVX_CAMJ8 RecName: Full=Putative Holliday junction resolvase
gi|57165752|gb|AAW34531.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
RM1221]
gi|85839726|gb|EAQ56986.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|112359991|emb|CAL34780.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|145845141|gb|EDK22236.1| hypothetical protein Cj8486_0644 [Campylobacter jejuni subsp.
jejuni CG8486]
gi|157385878|gb|ABV52193.1| putative Holliday junction resolvase [Campylobacter jejuni subsp.
jejuni 81116]
gi|205346719|gb|EDZ33351.1| hypothetical protein Cj8421_0637 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|307747552|gb|ADN90822.1| Putative Holliday junction resolvase [Campylobacter jejuni subsp.
jejuni M1]
gi|315058049|gb|ADT72378.1| Putative Holliday junction resolvase [Campylobacter jejuni subsp.
jejuni S3]
gi|315926753|gb|EFV06127.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315931833|gb|EFV10788.1| hypothetical protein CSU_0978 [Campylobacter jejuni subsp. jejuni
327]
Length = 127
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 5 ALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP-KGG 62
Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
SE + FV + D+++ F DE T+ A + + +K+ K+DS+
Sbjct: 63 SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALGYGV---ANTRKKDGKLDSL 115
Query: 140 AAALILQE 147
+A +++++
Sbjct: 116 SAFIMIKD 123
>gi|28199161|ref|NP_779475.1| Holliday junction resolvase-like protein [Xylella fastidiosa
Temecula1]
gi|182681892|ref|YP_001830052.1| Holliday junction resolvase-like protein [Xylella fastidiosa M23]
gi|54039590|sp|P67497|RUVX_XYLFT RecName: Full=Putative Holliday junction resolvase
gi|54042294|sp|P67496|RUVX_XYLFA RecName: Full=Putative Holliday junction resolvase
gi|226695318|sp|B2I5Y9|RUVX_XYLF2 RecName: Full=Putative Holliday junction resolvase
gi|28057259|gb|AAO29124.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
gi|182632002|gb|ACB92778.1| Holliday junction resolvase YqgF [Xylella fastidiosa M23]
gi|307578146|gb|ADN62115.1| Holliday junction resolvase-like protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 155
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN---IAAF 71
P+ + D+GT+RIG+A+ G + V A++ + +
Sbjct: 9 PDGIVLGFDVGTRRIGVAV---GSALGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGL 65
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS--- 128
++G PL + G + P AF + +R +P V DER ++V A +
Sbjct: 66 VVGDPLTLEGHDQPIRKQAHAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYK 124
Query: 129 RKKRIQKVDSIAAALILQEVL 149
R++ +D+IAAA+IL+ L
Sbjct: 125 RRRDADTLDAIAAAVILERWL 145
>gi|62263115|gb|AAX78128.1| unknown protein [synthetic construct]
Length = 184
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG++ + A P + +EL I N + IIGLP
Sbjct: 42 QSLIAIDYGKARIGISSGQMITKTATPIGTVEAYDGVPNWIELDKIIKCWNPSDIIIGLP 101
Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
L+ E S + F V RKV++ +E +T A+ L ++ + I
Sbjct: 102 LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 157
Query: 134 QKVDSIAAALILQ 146
KVD++AA +IL+
Sbjct: 158 -KVDALAACVILE 169
>gi|87124358|ref|ZP_01080207.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9917]
gi|86167930|gb|EAQ69188.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9917]
Length = 158
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+D+G +RIGLA DP P L R++ + L + ++GLPL+ N
Sbjct: 2 SLDVGRRRIGLAGCDPLGITVRPLAALQRRRFPEDLAHLRDLCLQRRVELLVVGLPLDRN 61
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
G + + + + + + +P + +E ++ +A + L
Sbjct: 62 GQPTEQAMHCQRYGLRLAE-ALQLPLAWINEHSSSWAAGEAL 102
>gi|88812469|ref|ZP_01127718.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231]
gi|88790255|gb|EAR21373.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231]
Length = 143
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 3/137 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D G +R+G+A+ P A P L ++ LL I A ++G+P + +
Sbjct: 8 GFDYGWRRLGVAVGQPLTGGARPVTTLRCRQGQPDWAALLHLIEAWQPTALVVGIPRHTD 67
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VDS 138
GS AF + +++ +P DERL++ A+ L + K VD
Sbjct: 68 GSASETTLQAVAFAQRL-EQRGGLPVHQVDERLSSHEARARLQATGRRLRGTTGKALVDQ 126
Query: 139 IAAALILQEVLDRISFL 155
AA +IL+ L+ L
Sbjct: 127 FAAQIILETWLNEQRLL 143
>gi|187931684|ref|YP_001891668.1| hypothetical protein FTM_0962 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|226725524|sp|B2SGN1|RUVX_FRATM RecName: Full=Putative Holliday junction resolvase
gi|187712593|gb|ACD30890.1| conserved hypothetical protein [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 136
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
L+ E S + F V RKV++ +E +T A+ L + + I
Sbjct: 63 LDTQNFETDITKSAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEFKSKKISHI 118
Query: 134 QKVDSIAAALILQ 146
KVD++AA +IL+
Sbjct: 119 -KVDALAACVILE 130
>gi|15595601|ref|NP_249095.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
PAO1]
gi|107099390|ref|ZP_01363308.1| hypothetical protein PaerPA_01000402 [Pseudomonas aeruginosa PACS2]
gi|116054135|ref|YP_788578.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218889146|ref|YP_002438010.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
LESB58]
gi|254237361|ref|ZP_04930684.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254243504|ref|ZP_04936826.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|296386903|ref|ZP_06876402.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
PAb1]
gi|313111974|ref|ZP_07797762.1| putative ribonuclease [Pseudomonas aeruginosa 39016]
gi|32130066|sp|Q9I699|RUVX_PSEAE RecName: Full=Putative Holliday junction resolvase
gi|122261724|sp|Q02U08|RUVX_PSEAB RecName: Full=Putative Holliday junction resolvase
gi|226731640|sp|B7V3Z1|RUVX_PSEA8 RecName: Full=Putative Holliday junction resolvase
gi|9946258|gb|AAG03793.1|AE004477_10 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|115589356|gb|ABJ15371.1| putative ribonuclease [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169292|gb|EAZ54803.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126196882|gb|EAZ60945.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218769369|emb|CAW25129.1| putative ribonuclease [Pseudomonas aeruginosa LESB58]
gi|310884264|gb|EFQ42858.1| putative ribonuclease [Pseudomonas aeruginosa 39016]
Length = 144
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
S KP + + D GT++IG+A+ A L + + + I A
Sbjct: 3 SDKPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPDAI 62
Query: 72 IIGLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ 119
++GLPLNM+GS P S RA ++ + +P DERLTT +A+
Sbjct: 63 VVGLPLNMDGS--PSEMSERAEKFGRRLNGRFNLPVFTHDERLTTYAAK 109
>gi|153835257|ref|ZP_01987924.1| conserved hypothetical protein [Vibrio harveyi HY01]
gi|148868232|gb|EDL67372.1| conserved hypothetical protein [Vibrio harveyi HY01]
Length = 141
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 30/149 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
I + D GTK IG AI ++VT TA L +F + I +
Sbjct: 5 IMAFDFGTKSIGSAIG---------------QEVTGTASPLKAFKANDGIPNWDDIEKQI 49
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLP +++G + + N + + +P DERL+T A+ L
Sbjct: 50 KEWQPDLLVVGLPTDLHGKDLETITPRAKKFANRLHGRYGLPVELHDERLSTAEARAELF 109
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
M + +D +A +IL+ + +
Sbjct: 110 SMGGYKALSKGNIDCQSAVVILESWFESL 138
>gi|237748807|ref|ZP_04579287.1| holliday junction resolvase [Oxalobacter formigenes OXCC13]
gi|229380169|gb|EEO30260.1| holliday junction resolvase [Oxalobacter formigenes OXCC13]
Length = 149
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D G KRIG AI + R A P + + ++ I I+GLP
Sbjct: 24 ILAFDFGLKRIGTAIGNELSRTARPLEIINAEANDIRFAKIGELIEEWQPVKLIVGLPSY 83
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+E + F N + + + + DER ++ +V +R + D+
Sbjct: 84 PDGTEHEMTRRCKRFA-NQLRGRFSLEIIMVDERYSS----------SVLHFQRGKADDA 132
Query: 139 IAAALILQEVLD 150
AAALILQ+ D
Sbjct: 133 HAAALILQQYFD 144
>gi|318041634|ref|ZP_07973590.1| putative Holliday junction resolvase [Synechococcus sp. CB0101]
Length = 151
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G KRIGLA D P P L R + L S + I A ++GLPL+
Sbjct: 3 ALDVGRKRIGLAGCDALGLTVTPLPALRRGRYPADLEHLRSLVAQRRITALVVGLPLDAQ 62
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ R + + R + +P +E ++ +A +
Sbjct: 63 QQPTEQAEHCRRYGERLA-RHLALPLALVNEFASSWAAAE 101
>gi|329946644|ref|ZP_08294056.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 170
str. F0386]
gi|328526455|gb|EGF53468.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 170
str. F0386]
Length = 129
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 66 ENIAAF--IIGLPLNMNGSEGPRVHSTRAFVHNMIDR---KVYVPFVFWDERLTTVSAQQ 120
+ AF I+GLP +M G R + ++ R +V V V DERLTTV+A +
Sbjct: 21 DEYGAFEVIVGLPKHMGGGSSSSTRDARRWARDLASRLPQRVCVRLV--DERLTTVTAHR 78
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVL 149
L + + VD AA +IL++ +
Sbjct: 79 DLHAAGLKERSFRGIVDQAAAVVILEQAI 107
>gi|148270377|ref|YP_001244837.1| Holliday junction resolvase YqgF [Thermotoga petrophila RKU-1]
gi|147735921|gb|ABQ47261.1| Holliday junction resolvase YqgF [Thermotoga petrophila RKU-1]
Length = 206
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 24/138 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G ++ G+A + L +K + L FI I GLPL+
Sbjct: 2 IVAVDYGERKCGVAFGE----------ILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 51
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G + T A K Y ++ DERLTT ++I +K D+
Sbjct: 52 MSGKYTQQTFKTIAVAFKF--SKEYETYL-CDERLTTKIGERI-----------SKKDDA 97
Query: 139 IAAALILQEVLDRISFLE 156
++AALI Q + S E
Sbjct: 98 VSAALIFQSFFENSSVCE 115
>gi|56476387|ref|YP_157976.1| Holliday junction resolvase-like protein [Aromatoleum aromaticum
EbN1]
gi|62900914|sp|Q5P6I6|RUVX_AZOSE RecName: Full=Putative Holliday junction resolvase
gi|56312430|emb|CAI07075.1| holliday junction resolvase [Aromatoleum aromaticum EbN1]
Length = 156
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G RIG+A+ + R A L + + + ++G+P +++
Sbjct: 20 AFDFGLARIGVAVGELETRRASALLTLHGEASAPRFAAIAKLLDEWRPVGLVVGMPSHLD 79
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVDSI 139
G+ R F N + + +P + DERL++ +A L + + R Q +D++
Sbjct: 80 GTPHEMTARCRRFA-NQLHGRFGLPVLECDERLSSAAADAALAEAGTHDWRARKQVLDAV 138
Query: 140 AAALILQEVLD 150
AA +ILQ LD
Sbjct: 139 AAQIILQHFLD 149
>gi|152988020|ref|YP_001345899.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
PA7]
gi|167012751|sp|A6UYL4|RUVX_PSEA7 RecName: Full=Putative Holliday junction resolvase
gi|150963178|gb|ABR85203.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 144
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
KP + + D GT++IG+A+ A L + + + I A ++
Sbjct: 5 KPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPDAIVV 64
Query: 74 GLPLNMNGSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQ 119
GLPLNM+GS P S RA ++ + +P DERLTT +A+
Sbjct: 65 GLPLNMDGS--PSEMSERAEKFGRRLNGRFNLPVFTHDERLTTYAAK 109
>gi|116070989|ref|ZP_01468258.1| Holliday junction resolvase YqgF [Synechococcus sp. BL107]
gi|116066394|gb|EAU72151.1| Holliday junction resolvase YqgF [Synechococcus sp. BL107]
Length = 151
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
S+D+G KRIGLA D P P L R + L L ++ ++GLPL+
Sbjct: 3 SLDVGRKRIGLAGCDALGITVTPLPALHRGRFDNDLLVLRDHCQRRSVQGLVVGLPLDSA 62
Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQ 120
G P V + + + + + + +P + +E +T +A +
Sbjct: 63 GQ--PTVQAVHCQRYGLRLAQTLGLPLAWVNEHSSTWAAGE 101
>gi|159903511|ref|YP_001550855.1| endonuclease [Prochlorococcus marinus str. MIT 9211]
gi|226731638|sp|A9BAN9|RUVX_PROM4 RecName: Full=Putative Holliday junction resolvase
gi|159888687|gb|ABX08901.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. MIT 9211]
Length = 145
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + S+D+G +RIG+A DP + R A +L ++ IIGL
Sbjct: 6 SKSVLSLDVGKRRIGIAGCDPLGITITQLEAIKRTTFNNEATQLRQLCDLRDVRGIIIGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQ 120
PL+ G E S+ + + + I +++ +P + +E +T A Q
Sbjct: 66 PLSDLGKETK--QSSYCYTYGINIAKELNLPLAWVNEHSSTWEAGQ 109
>gi|254432757|ref|ZP_05046460.1| conserved hypothetical protein TIGR00250 [Cyanobium sp. PCC 7001]
gi|197627210|gb|EDY39769.1| conserved hypothetical protein TIGR00250 [Cyanobium sp. PCC 7001]
Length = 167
Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 19 IASIDLGTKRIGLAISDP-G---RRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ ++D+G +RIGLA DP G RR P L R + L + + A ++G
Sbjct: 9 VLALDVGRRRIGLAGCDPLGLTVRRL----PALARGRFPADLQRLQELLAERRVEALVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
LPL+ G + R + + +P + +E +T SA +
Sbjct: 65 LPLDQAGQPTEQARHCRRYGERLAV-GTGLPLAWVNEHGSTWSAAE 109
>gi|163854867|ref|YP_001629165.1| Holliday junction resolvase-like protein [Bordetella petrii DSM
12804]
gi|226725491|sp|A9I1T0|RUVX_BORPD RecName: Full=Putative Holliday junction resolvase
gi|163258595|emb|CAP40894.1| putative Hollyday junction resolvase [Bordetella petrii]
Length = 131
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL---VRKKVTQTALELLSFITTENIAAF 71
P + + + D G K+IG+AI + R A P + +R+ +LL + +
Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSEIREARFARIGQLLQQWQPQRV--- 58
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122
++GL L +G E P R F + + R + V V DER +++ AQ++L
Sbjct: 59 VVGLALASDGGEQPATARCRRFANQLRGRYGLAVELV--DERGSSMEAQRLL 108
>gi|118497459|ref|YP_898509.1| hypothetical protein FTN_0867 [Francisella tularensis subsp.
novicida U112]
gi|195536151|ref|ZP_03079158.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
gi|167012725|sp|A0Q690|RUVX_FRATN RecName: Full=Putative Holliday junction resolvase
gi|118423365|gb|ABK89755.1| conserved protein of unknown function [Francisella novicida U112]
gi|194372628|gb|EDX27339.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
Length = 136
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
L+ E + + F V RKV++ +E +T A+ L ++ + I
Sbjct: 63 LDTQNFETDITKAAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118
Query: 134 QKVDSIAAALILQ 146
KVD++AA +IL+
Sbjct: 119 -KVDALAACVILE 130
>gi|325282547|ref|YP_004255088.1| Holliday junction resolvase [Deinococcus proteolyticus MRP]
gi|324314356|gb|ADY25471.1| Holliday junction resolvase [Deinococcus proteolyticus MRP]
Length = 159
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 20/135 (14%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF-ITTENIAA--FIIGLPLN 78
+D+ +RIG A+S R A R + R+++ L+L + + E+ A ++GLPL
Sbjct: 36 LDVSKRRIGFAVSQG--RLAFGRGSVERRRLP---LDLKAVRLKVEDTGAEVLVLGLPLR 90
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+ P R+F + ++ V + DER TT A+ + + +D
Sbjct: 91 TDGAHSPAADRVRSFGRVLEEKGYRVE--YQDERFTTQRARALG----------AEDLDE 138
Query: 139 IAAALILQEVLDRIS 153
AA IL+ L R++
Sbjct: 139 AAAVQILELWLTRMA 153
>gi|330941625|gb|EGH44406.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 129
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GTK+IG+A+ A L + ++ + I A ++GLPLNM+
Sbjct: 9 GIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLNMD 68
Query: 81 GSEGPRVHSTRAF-VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-RIQKVDS 138
G+ P S RA ++ + V DERLTT A+ + + R VD+
Sbjct: 69 GT--PSDMSARAEKFSRKLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVDA 126
Query: 139 IAA 141
IAA
Sbjct: 127 IAA 129
>gi|260775563|ref|ZP_05884460.1| putative Holliday junction resolvase [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608744|gb|EEX34909.1| putative Holliday junction resolvase [Vibrio coralliilyticus ATCC
BAA-450]
Length = 135
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 36/155 (23%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
+ D GTK IG AI +++T TA L +F + I +
Sbjct: 2 AFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDDIEKQIKE 46
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
++GLP +++G + + N + + +P DERL+T A+ L M
Sbjct: 47 WQPNLLVVGLPTDLHGKDLETITPRAKKFANRLHGRFGLPVELHDERLSTTEARSELFSM 106
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ VD +A +IL+ S+ E+ G
Sbjct: 107 GGYKALSKGNVDCQSAVVILE------SWFEAQYG 135
>gi|88597054|ref|ZP_01100290.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 84-25]
gi|88190743|gb|EAQ94716.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 84-25]
gi|284925895|gb|ADC28247.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni IA3902]
Length = 127
Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 5 ALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIP-KGG 62
Query: 81 GSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
SE + FV + D+++ F DE T+ A + + +K+ K+DS+
Sbjct: 63 SSEEEMTRRIKHFVSLLEFDKEI----CFVDESGTSKEALGYGV---ANTRKKDGKLDSL 115
Query: 140 AAALILQE 147
+A +++++
Sbjct: 116 SAFIMIKD 123
>gi|121612111|ref|YP_001000336.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni 81-176]
gi|167005282|ref|ZP_02271040.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni 81-176]
gi|167012709|sp|A1VYZ5|RUVX_CAMJJ RecName: Full=Putative Holliday junction resolvase
gi|87250480|gb|EAQ73438.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 81-176]
Length = 127
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P +
Sbjct: 5 ALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGS 63
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
E TR H + + F DE T+ A + + +K+ K+DS++
Sbjct: 64 REE----EMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV---ANTRKKDGKLDSLS 116
Query: 141 AALILQE 147
A +++++
Sbjct: 117 AFIMIKD 123
>gi|208779255|ref|ZP_03246601.1| conserved hypothetical protein [Francisella novicida FTG]
gi|254374279|ref|ZP_04989761.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|151571999|gb|EDN37653.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|208745055|gb|EDZ91353.1| conserved hypothetical protein [Francisella novicida FTG]
Length = 136
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
L+ E + + F V RKV++ +E +T A+ L ++ + I
Sbjct: 63 LDTQDFETDITKAAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118
Query: 134 QKVDSIAAALILQ 146
KVD++AA +IL+
Sbjct: 119 -KVDALAACVILE 130
>gi|254284129|ref|ZP_04959097.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
NOR51-B]
gi|219680332|gb|EED36681.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
NOR51-B]
Length = 143
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 1/128 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G ++IG+AI + P + + ++ I ++G PLN
Sbjct: 8 VMGFDYGLRQIGVAIGNTLLGQGKPLAIVTARDGKPDWSQIERLIGEWQPDHLVVGKPLN 67
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS+ + + A ++ + P DERLT+ A+ D + +D
Sbjct: 68 MDGSDS-EMGARAAKFSRQLNGRFAKPVDLVDERLTSREAKSQSRDRGHNGNYTTDPIDD 126
Query: 139 IAAALILQ 146
AAALIL
Sbjct: 127 EAAALILN 134
>gi|89900172|ref|YP_522643.1| Holliday junction resolvase-like protein [Rhodoferax ferrireducens
T118]
gi|146325599|sp|Q21YP1|RUVX_RHOFD RecName: Full=Putative Holliday junction resolvase
gi|89344909|gb|ABD69112.1| Holliday junction resolvase YqgF [Rhodoferax ferrireducens T118]
Length = 156
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
Q ++D G KR G A+ + R A P+ + + + + AL+L + A ++
Sbjct: 33 QTFLALDFGLKRTGFAVGNRLLRTAQPQGTIAAEGDARFVKIALQLKEWQPD----ALVV 88
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G+P + +G+ R F + R +P DER TT A + R R
Sbjct: 89 GVPFHPDGAAHENTLRARRFARQLQGR-FKLPVFEVDERYTTTEA--------LGRGAR- 138
Query: 134 QKVDSIAAALILQEVLDRI 152
D++AA +IL++ L I
Sbjct: 139 -DADAMAACIILEQFLRSI 156
>gi|237752177|ref|ZP_04582657.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376419|gb|EEO26510.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 146
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL- 77
I +ID+G KRIG+A S G P L RK Q A + + + ++G+P
Sbjct: 6 IIAIDIGLKRIGVAKSIRGIPLC-LEPIL-RKNRNQAANAVRTLVLELQANVLVVGIPFV 63
Query: 78 ----NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
N S + FV +++ + + VF+DE ++ A + L D + +K
Sbjct: 64 DDVSKANDSICAMQRRIKHFV-GLLELESKIEIVFFDESFSSKEALEKLDDKKMRKKAHS 122
Query: 134 Q--KVDSIAAALILQEVL 149
+ +DS+AA +IL+ L
Sbjct: 123 KDGSLDSLAALVILERYL 140
>gi|328676957|gb|AEB27827.1| Putative Holliday junction resolvase [Francisella cf. novicida Fx1]
Length = 136
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
L+ E + + F + RKV++ +E +T A+ L ++ + I
Sbjct: 63 LDTQNFETDITKAAKDFAKEIQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI 118
Query: 134 QKVDSIAAALILQ 146
KVD++AA +IL+
Sbjct: 119 -KVDALAACVILE 130
>gi|170288997|ref|YP_001739235.1| Holliday junction resolvase YqgF [Thermotoga sp. RQ2]
gi|281412683|ref|YP_003346762.1| Holliday junction resolvase YqgF [Thermotoga naphthophila RKU-10]
gi|170176500|gb|ACB09552.1| Holliday junction resolvase YqgF [Thermotoga sp. RQ2]
gi|281373786|gb|ADA67348.1| Holliday junction resolvase YqgF [Thermotoga naphthophila RKU-10]
Length = 206
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 24/138 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G ++ G+A + L +K + L FI I GLPL+
Sbjct: 2 IVAVDYGERKCGVAFGE----------ILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 51
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G + T A K Y ++ DERLTT ++I ++ D+
Sbjct: 52 MSGKYTQQTFKTVAVAFKF--SKEYETYL-CDERLTTKIGERI-----------SKRDDA 97
Query: 139 IAAALILQEVLDRISFLE 156
++AALI Q + S E
Sbjct: 98 VSAALIFQSFFENSSVCE 115
>gi|217076673|ref|YP_002334389.1| putative Holliday junction resolvase [Thermosipho africanus TCF52B]
gi|217036526|gb|ACJ75048.1| putative Holliday junction resolvase [Thermosipho africanus TCF52B]
Length = 202
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 31/134 (23%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G + G AI G F + K + ++L+S N ++G+PL+
Sbjct: 2 IIAIDYGNSKCGYAI---GNNFISKSGAVKTKDI----MKLIS-----NAKKIVMGIPLS 49
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT-------------VSAQQILIDM 125
M+G+ + F +N++++ V + DERLTT SA+QI +D
Sbjct: 50 MSGNYSTQSLKVLTFANNLVEKGYDVFLI--DERLTTKMASSFGIKDDDAFSARQIFMDF 107
Query: 126 ----NVSRKKRIQK 135
+V++K R +K
Sbjct: 108 VQNPSVAQKFRKEK 121
>gi|15644293|ref|NP_229345.1| hypothetical protein TM1545 [Thermotoga maritima MSB8]
gi|32130074|sp|Q9X1N1|RUVX_THEMA RecName: Full=Putative Holliday junction resolvase
gi|4982112|gb|AAD36612.1|AE001800_22 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 218
Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 24/138 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G ++ G+A + L +K + L FI I GLPL+
Sbjct: 14 IVAVDYGERKCGVAFGE----------ILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G + T A K Y ++ DERLTT ++I ++ D+
Sbjct: 64 MSGKYTQQTFKTVAVAFKF--SKEYETYL-CDERLTTKIGERI-----------SKRDDA 109
Query: 139 IAAALILQEVLDRISFLE 156
++AALI Q + S E
Sbjct: 110 VSAALIFQSFFENSSVCE 127
>gi|256370664|ref|YP_003108489.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri SMDSEM]
gi|256009456|gb|ACU52816.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri SMDSEM]
Length = 138
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID GTKRIGL+I P R A L + +I + I +IG PL
Sbjct: 4 ILCIDFGTKRIGLSI--PIRSIAFGLETLETVDYNHLIATIDKYIKNKYIDTLVIGHPLK 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID--MNVSRKKRIQKV 136
+ S P F++ + + DER ++ A LI+ N ++K+ + +
Sbjct: 62 SDKSLFPIEKDIIKFINFFKTKYPKLIIKRIDERFSSKIANYFLINSFFNKKKRKQKKIL 121
Query: 137 DSIAAALILQEVL 149
D I+A L+LQ+ +
Sbjct: 122 DQISAILLLQDFI 134
>gi|254482697|ref|ZP_05095935.1| conserved hypothetical protein TIGR00250 [marine gamma
proteobacterium HTCC2148]
gi|214037056|gb|EEB77725.1| conserved hypothetical protein TIGR00250 [marine gamma
proteobacterium HTCC2148]
Length = 98
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++G PLNM+GS F + R + +P DERL++ A+Q +
Sbjct: 13 LVVGEPLNMDGSVSELSEKAHKFGRRLGGR-LNLPVQMVDERLSSFEAKQQSRERGHGGD 71
Query: 131 KRIQKVDSIAAALILQEVL 149
+DS+AA LILQ L
Sbjct: 72 YNKNPIDSLAAELILQTWL 90
>gi|224032587|gb|ACN35369.1| unknown [Zea mays]
Length = 146
Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 47 LVRKK--VTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
L R K + A + + ++ +IA F++G P + G P + + + + + +
Sbjct: 25 LCRTKTNINLMADDFKTLVSMYSIAGFVVGYPFKIYGQ--PCASAIQVSLAGELCKTGKL 82
Query: 105 ---PFVFWDERLTTVSAQQILIDMNVSRKKRIQKV-DSIAAALILQEVLDRIS 153
P+ +WDE T+ + +L +N+ + + D AA ILQ LD ++
Sbjct: 83 DDLPYAYWDENFTSKCVEALLHPLNLKDLDDAKTMTDKFAAVCILQGYLDNMN 135
>gi|327482652|gb|AEA85962.1| Holliday junction resolvase-like protein [Pseudomonas stutzeri DSM
4166]
Length = 142
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D GTK+IG+A+ A L + ++ + + A ++GLPLNM+
Sbjct: 9 GFDYGTKQIGVAVGQVVTGQARELCVLKAQNGVPDWQQIEALLREWQPDALVVGLPLNMD 68
Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ 119
GS P S RA F + R +P DERLTT A+
Sbjct: 69 GS--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAK 106
>gi|146284269|ref|YP_001174422.1| Holliday junction resolvase-like protein [Pseudomonas stutzeri
A1501]
gi|145572474|gb|ABP81580.1| predicted endonuclease involved in recombination [Pseudomonas
stutzeri A1501]
Length = 142
Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D GTK+IG+A+ A L + ++ + + A ++GLPLNM+
Sbjct: 9 GFDYGTKQIGVAVGQVVTGQARELCVLKAQNGVPDWQQIEALLREWQPDALVVGLPLNMD 68
Query: 81 GSEGPRVHSTRA--FVHNMIDRKVYVPFVFWDERLTTVSAQ 119
GS P S RA F + R +P DERLTT A+
Sbjct: 69 GS--PSEMSARAEKFARRLNGR-FNLPVHTHDERLTTFEAK 106
>gi|167627980|ref|YP_001678480.1| hypothetical protein Fphi_1753 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|241668534|ref|ZP_04756112.1| hypothetical protein FphipA2_07196 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877069|ref|ZP_05249779.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|189046097|sp|B0U0E9|RUVX_FRAP2 RecName: Full=Putative Holliday junction resolvase
gi|167597981|gb|ABZ87979.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254843090|gb|EET21504.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 136
Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIGLA + A P + +EL + N + +IGLP
Sbjct: 3 QSLIAIDYGKARIGLASGQMITKTATPIGTVEAYDGVPNWIELDKIVKRWNPSDIVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
L+ E + + F + +R K V + +E +T A+ L ++ + I K
Sbjct: 63 LDTQDFETDITKAAKDFAKEVKERYKRNVHLI--NEAYSTREARWRLEEVKSKKVSHI-K 119
Query: 136 VDSIAAALILQ 146
VD++AA +IL+
Sbjct: 120 VDALAACVILE 130
>gi|222100102|ref|YP_002534670.1| Putative Holliday junction resolvase [Thermotoga neapolitana DSM
4359]
gi|221572492|gb|ACM23304.1| Putative Holliday junction resolvase [Thermotoga neapolitana DSM
4359]
Length = 207
Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 30/142 (21%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G ++ G+A L + V EL F+ N + G+PL+
Sbjct: 2 IVAIDYGERKCGVAFGK----------ILPQDSVVVPTRELKKFVERLNPDKIVFGMPLS 51
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G + T + K Y ++ DERLTT A ++ ++ D+
Sbjct: 52 MSGRYSQQTFKTVEVALSF--SKKYETYL-CDERLTTRIASKV-----------SKRDDA 97
Query: 139 IAAALILQEVLDRISFLESSKG 160
++AALI Q SF+E+ G
Sbjct: 98 VSAALIFQ------SFVENPAG 113
>gi|79317769|ref|NP_001031028.1| DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic
acid binding / recombinase [Arabidopsis thaliana]
gi|332190735|gb|AEE28856.1| putative holliday junction resolvase [Arabidopsis thaliana]
Length = 254
Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLPLNM 79
+DLG R G+AIS + +P V K Q LL E FIIGLP +
Sbjct: 85 GVDLGLSRTGIAIS----KGYTVKPLTVLKSRGQKLETRLLEIAEEEEADEFIIGLPRSS 140
Query: 80 NGSEGPRVHSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+G E + + R+ + + + +VF DE TT A +I M +S+ +R +
Sbjct: 141 DGKETIQSNKIRSVAGRLAIQAAERGWRVYVF-DEHGTTSEASDRMIVMGLSKSERQNRS 199
Query: 137 DSIAAALILQ 146
D+ AA ++L+
Sbjct: 200 DAYAAVILLE 209
>gi|260773599|ref|ZP_05882515.1| putative Holliday junction resolvase [Vibrio metschnikovii CIP
69.14]
gi|260612738|gb|EEX37941.1| putative Holliday junction resolvase [Vibrio metschnikovii CIP
69.14]
Length = 141
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 30/148 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
I + D GTK IG AI +++T TA L +F + I +
Sbjct: 5 IMAFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDEIEKQI 49
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLP +++G + + N + + +P DERL+T A+ L
Sbjct: 50 KEWQPNLLVVGLPTDLHGKDLDTITPRAKKFANRLHGRFGLPVELHDERLSTAEARSELF 109
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDR 151
+ +D +A +IL+ +R
Sbjct: 110 AHGGYKALSKGNIDCQSAVVILESWFER 137
>gi|255626817|gb|ACU13753.1| unknown [Glycine max]
Length = 110
Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 56 ALELLSFITTENIAAFIIGLPLNMN--GSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDE 111
A +L S I ++ F+IG+P + + S+ +V + F+ N+ K+ V + +W+E
Sbjct: 2 ASDLESLIAKYSLKGFVIGIPFDKHQVSSDAMQV---KVFIDNLCRTKMLEGVKYAYWNE 58
Query: 112 RLTTVSAQQILIDMNVSRKKRIQK-VDSIAAALILQEVLDRIS 153
T+ + + +L +N++ + +D AA ILQ LD ++
Sbjct: 59 SFTSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVN 101
>gi|293603244|ref|ZP_06685676.1| crossover junction endodeoxyribonuclease [Achromobacter piechaudii
ATCC 43553]
gi|292818376|gb|EFF77425.1| crossover junction endodeoxyribonuclease [Achromobacter piechaudii
ATCC 43553]
Length = 136
Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G K+IG+AI + R A P + + + + + ++G
Sbjct: 5 PEETLLGFDFGEKKIGIAIGNTLTRQARPLEIIFSEIRDARFGRIAALLQEWQPHRVVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
L L+ +G E R F N + + + DER +++ AQ++L
Sbjct: 65 LALDADGGEQAATARCRRFA-NQLHGRFGIAVELVDERGSSMEAQRLL 111
>gi|163803740|ref|ZP_02197598.1| Holliday junction resolvase-like protein [Vibrio sp. AND4]
gi|159172459|gb|EDP57327.1| Holliday junction resolvase-like protein [Vibrio sp. AND4]
Length = 141
Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 30/149 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
I + D GTK IG AI +++T TA L +F + I +
Sbjct: 5 IMAFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDDIEKQI 49
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++G P +++G + + N + + +P DERL+T A+ L
Sbjct: 50 KEWQPDLLVVGYPTDLHGKDLETITPRAKKFANRLHGRYGLPVELHDERLSTTEARAELF 109
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
M + +D +A +IL+ + +
Sbjct: 110 SMGGYKALSKGNIDCQSAVVILESWFESL 138
>gi|194476596|ref|YP_002048775.1| Holliday junction resolvase YqgF [Paulinella chromatophora]
gi|171191603|gb|ACB42565.1| Holliday junction resolvase YqgF [Paulinella chromatophora]
Length = 141
Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 16 NQP--IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+QP I +D+G RIG+A D P L R L L I+ ++ A +I
Sbjct: 5 SQPCSILCLDVGRYRIGMAGCDSLYFSISLLPALHRNNFETDLLSLKYLISERSVEALVI 64
Query: 74 GLPLN-MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
G+PLN + ++ R H + + + +P + +E +T S D +
Sbjct: 65 GIPLNDLAQITKQAIYCRRYGKH--LAQTLRLPVAWVNENGSTWSTS----DQYKIYNDK 118
Query: 133 IQKVDSIAAALILQE 147
++DS+ AAL+L++
Sbjct: 119 SGRLDSMVAALLLEQ 133
>gi|87304077|ref|ZP_01086656.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 5701]
gi|87281492|gb|EAQ73539.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 5701]
Length = 148
Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
+D+G KRIGLA D P P L R + L L ++ ++GLPL+ G
Sbjct: 1 MDVGRKRIGLAGCDALGITVTPLPALHRGRFDNDLLVLRDHCQRRSVQGLVVGLPLDSAG 60
Query: 82 SEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSAQQ 120
P V + + + + + + +P + +E +T +A +
Sbjct: 61 Q--PTVQAVHCQRYGLRLAQTLGLPLAWVNEHSSTWAAGE 98
>gi|297180573|gb|ADI16785.1| predicted endonuclease involved in recombination (possible holliday
junction resolvase in mycoplasmas and B. subtilis)
[uncultured gamma proteobacterium HF0010_11B23]
Length = 128
Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 15/135 (11%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ S+D GTK IG+ I++ P P + T L+ L NI +IG+P
Sbjct: 8 VLSLDYGTKNIGICIAETYTGQTKPLPVIENNDSFYTELDNLLKEWRPNIV--LIGIPPK 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+ ++ +A++ N + ++ + + + + K+ DS
Sbjct: 66 MSSDFNDGLNEAKAYIIN-------------EHKIKVIEVNEDFTTQGLDKCKKNHMKDS 112
Query: 139 IAAALILQEVLDRIS 153
+A LI Q+ + I
Sbjct: 113 YSAELIFQDWFNDID 127
>gi|254372859|ref|ZP_04988348.1| hypothetical protein FTCG_00429 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570586|gb|EDN36240.1| hypothetical protein FTCG_00429 [Francisella novicida GA99-3549]
Length = 138
Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ID G RIG+A + A P + +EL I N + IIGLPL+
Sbjct: 9 AIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLPLDTQ 68
Query: 81 GSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
E + + F V RKV++ +E +T A+ L ++ + I KVD
Sbjct: 69 DFETDITKAAKDFAKEVQQRYQRKVHLI----NEAYSTREARWRLEEVKSKKVSHI-KVD 123
Query: 138 SIAAALILQ 146
++AA +IL+
Sbjct: 124 ALAACVILE 132
>gi|312883850|ref|ZP_07743567.1| Holliday junction resolvase-like protein [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368308|gb|EFP95843.1| Holliday junction resolvase-like protein [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 140
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 30/151 (19%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
++ I + D GTK IG AI ++VT TA L +F + I +
Sbjct: 2 SRTIMAFDFGTKSIGSAIG---------------QEVTGTASPLKAFKANDGIPNWDEIE 46
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLP++++G + N + + V DERL+T A+
Sbjct: 47 KQIKEWQPHLIVVGLPMDLHGKALESITQRAKKFANRLHGRFGVDVELHDERLSTTEARS 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
L M + VD +A +IL+ +
Sbjct: 107 ELFAMGGYKALTKGNVDCQSAVVILESWFEH 137
>gi|148980485|ref|ZP_01816082.1| Holliday junction resolvase-like protein [Vibrionales bacterium
SWAT-3]
gi|145961210|gb|EDK26524.1| Holliday junction resolvase-like protein [Vibrionales bacterium
SWAT-3]
Length = 140
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 30/147 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
I + D GTK IG AI +++T TA L +F + I +
Sbjct: 5 IMAFDYGTKSIGSAIG---------------QEITGTASPLKAFKAKDGIPNWDDIEKQI 49
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLP +++G + N + + V DERL+T A+ L
Sbjct: 50 KEWQPNLIVVGLPTDLHGRALETITPRAKKFANRLKGRFGVDVELHDERLSTAEARADLF 109
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
DM + VD+ +A +IL+ +
Sbjct: 110 DMGGYKALSKGNVDNQSAVVILESWFE 136
>gi|86146410|ref|ZP_01064734.1| Holliday junction resolvase-like protein [Vibrio sp. MED222]
gi|218710626|ref|YP_002418247.1| Holliday junction resolvase-like protein [Vibrio splendidus LGP32]
gi|85835889|gb|EAQ54023.1| Holliday junction resolvase-like protein [Vibrio sp. MED222]
gi|218323645|emb|CAV19936.1| putative Holliday junction resolvase [Vibrio splendidus LGP32]
Length = 140
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 36/157 (22%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
I + D GTK IG AI +++T TA L +F + I +
Sbjct: 5 IMAFDYGTKSIGSAIG---------------QEITGTASPLKAFKAKDGIPNWDDIEKQI 49
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLP +++G + + N + + V DERL+T A+ L
Sbjct: 50 KEWQPNLIVVGLPTDLHGKDLAAITPRAKKFANRLKGRFGVDVELHDERLSTTEARADLF 109
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+M + VD+ +A +IL+ S+ E+ G
Sbjct: 110 EMGGYKALSKGNVDNQSAVVILE------SWFEAQYG 140
>gi|213620668|ref|ZP_03373451.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 71
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D GTK IG+AI A P P + + T + + I+GLPLNM+
Sbjct: 7 AFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66
Query: 81 GSEGP 85
G+E P
Sbjct: 67 GTEQP 71
>gi|160901820|ref|YP_001567401.1| Holliday junction resolvase YqgF [Petrotoga mobilis SJ95]
gi|160359464|gb|ABX31078.1| Holliday junction resolvase YqgF [Petrotoga mobilis SJ95]
Length = 230
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N + ID GT G+AI P+ + +K+ LE L + + + GL
Sbjct: 6 NLKVYGIDYGTSNCGIAILKQDVNIPLPKETIKSEKL----LEFLVSLDLSHDDLIVFGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVH----NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
P++M+G +S ++F+ I K+ F DERLTT S + VS KK
Sbjct: 62 PISMSGR-----YSKQSFLSIDEAIKIKEKIGCKIYFVDERLTTSSLYS-EVRGQVSYKK 115
Query: 132 RIQKVDSIAAALIL 145
+ D ++ LIL
Sbjct: 116 VKRTKDQNSSVLIL 129
>gi|156975830|ref|YP_001446737.1| Holliday junction resolvase-like protein [Vibrio harveyi ATCC
BAA-1116]
gi|156527424|gb|ABU72510.1| hypothetical protein VIBHAR_03575 [Vibrio harveyi ATCC BAA-1116]
Length = 136
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 30/147 (20%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF--------- 71
+ D GTK IG AI ++VT TA L +F + I +
Sbjct: 2 AFDFGTKSIGSAIG---------------QEVTGTASPLKAFKANDGIPNWDDIEKQIKE 46
Query: 72 ------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
++GLP +++G + + N + + +P DERL+T A+ L +
Sbjct: 47 WQPDLLVVGLPTDLHGKDLETITPRAKKFANRLHGRYGLPVELHDERLSTAEARAELFSI 106
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152
+ +D +A +IL+ + +
Sbjct: 107 GGYKALSKGNIDCQSAVVILESWFENL 133
>gi|224417735|ref|ZP_03655741.1| Holliday junction resolvase-like protein [Helicobacter canadensis
MIT 98-5491]
gi|253827079|ref|ZP_04869964.1| putative endonuclease [Helicobacter canadensis MIT 98-5491]
gi|313141277|ref|ZP_07803470.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|253510485|gb|EES89144.1| putative endonuclease [Helicobacter canadensis MIT 98-5491]
gi|313130308|gb|EFR47925.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 133
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q I ++D+G KRIG+A S P P ++RK Q A E+ I I I+G+P
Sbjct: 2 QSILALDIGLKRIGIAKSI--HNIPIPLPPILRKNRNQAAKEVSQVICDSKIQTLIVGIP 59
>gi|325919592|ref|ZP_08181604.1| hypothetical protein TIGR00250 [Xanthomonas gardneri ATCC 19865]
gi|325549928|gb|EGD20770.1| hypothetical protein TIGR00250 [Xanthomonas gardneri ATCC 19865]
Length = 155
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
Query: 12 SLKPNQPIASIDLGTKRIGLAIS---DPGRRFAHPRPFLVRKKVTQTALELLSFITTE-N 67
+++P+ + D+G++RIG+A+ G R ++ T L + E
Sbjct: 6 AIRPDGTVLGFDVGSRRIGVAVGTALGAGARAV----AVINVHATGPDWAALDRVHKEWR 61
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+IG PL ++ + P AF + +R +P V DER ++V A Q
Sbjct: 62 PDGLVIGDPLTLDDKDQPARKRAHAFARQLRERYA-LPVVLIDERSSSVEAAQRFARERA 120
Query: 128 SRKKR 132
+KR
Sbjct: 121 DGRKR 125
>gi|238026385|ref|YP_002910616.1| Holliday junction resolvase-like protein [Burkholderia glumae BGR1]
gi|237875579|gb|ACR27912.1| Holliday junction resolvase YqgF [Burkholderia glumae BGR1]
Length = 152
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+ D G KRIG+A+ + R A + + I A ++GLPL+ +
Sbjct: 13 AFDYGEKRIGVAVGNTLTRTARALVIVANLNRDHRFKAIGELIAEWRPDALVVGLPLHPD 72
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
G+ R F N ++ + +P + DER ++V A+ L
Sbjct: 73 GTPHEMTQQARRFG-NQLNGRFSLPVSWIDERYSSVEARAQL 113
>gi|84394068|ref|ZP_00992804.1| Holliday junction resolvase-like protein [Vibrio splendidus 12B01]
gi|84375310|gb|EAP92221.1| Holliday junction resolvase-like protein [Vibrio splendidus 12B01]
Length = 140
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 30/147 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF------- 71
I + D GTK IG AI +++T TA L +F + I +
Sbjct: 5 IMAFDYGTKSIGSAIG---------------QEITGTASPLKAFKAKDGIPNWDDIEKQI 49
Query: 72 --------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLP +++G + + N + + V DERL+T A+ L
Sbjct: 50 KEWQPNLIVVGLPTDLHGKDLAAITPRAKKFANRLKGRFGVDVELHDERLSTTEARADLF 109
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
+M + VD+ +A +IL+ +
Sbjct: 110 EMGGYKALSKGNVDNQSAVVILESWFE 136
>gi|149191949|ref|ZP_01870180.1| Holliday junction resolvase-like protein [Vibrio shilonii AK1]
gi|148834216|gb|EDL51222.1| Holliday junction resolvase-like protein [Vibrio shilonii AK1]
Length = 141
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 55/135 (40%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P K ++ + + ++GL
Sbjct: 3 SRTIIAFDYGTKSIGSAIGQEVTGTASPLKAFKAKDGIPNWDDIEAMLKEWQPDLIVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +++G + + N + + + DERL+T A+ L +M +
Sbjct: 63 PTDLHGKALEEITARAKKFANRVHGRFGLQVELHDERLSTAEARAELFEMGGYKALSKGN 122
Query: 136 VDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 123 VDCQSAVVILESWFE 137
>gi|71894392|ref|YP_278500.1| hypothetical protein MS53_0377 [Mycoplasma synoviae 53]
Length = 125
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 29 IGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRV 87
+G AISD F+ F + ++ F+ I FIIG PLN G +
Sbjct: 1 MGFAISDESNSFSLALENFDYDGSYEKIIQKIQLFLDEYKIDKFIIGYPLNSRGEKTKTC 60
Query: 88 HSTRAFVHNM---IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
F+ ++ D+K+ + +E ++ A +IL N+ KK+ K D +AA +I
Sbjct: 61 LLIDEFIIHLEKNFDQKIKLI----NESYSSRKASEILHQANIKNKKQKDKKDMLAAKII 116
Query: 145 LQEVLD 150
LQ+ LD
Sbjct: 117 LQDYLD 122
>gi|258544006|ref|ZP_05704240.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826]
gi|258520747|gb|EEV89606.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826]
Length = 134
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G ++ G+A+ + A P L A +++ +++ +IGLP
Sbjct: 6 ILALDVGQRKTGVAVGQSLTQTAKPLAVLRHPAQQLEAAHFAAWVREWSVSHIVIGLPKL 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G E P R + +P + DE L++ A+ +R ++VD+
Sbjct: 66 RDGKEHPLAAPIR-RIGAKCQEAFGLPVHYIDEYLSSHEAR--------ARLPGEKEVDA 116
Query: 139 IAAALILQEVL 149
+AAA+I ++ L
Sbjct: 117 MAAAIIAEDWL 127
>gi|317008982|gb|ADU79562.1| Holliday junction resolvase-like protein [Helicobacter pylori
India7]
Length = 134
Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 13/138 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ G P ++R+ Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAVLLNG--VILPLEAILRRNRNQASRDLSDLLREKNIQVLVVGKPNE 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ---- 134
R+ F+ ++D K + VF +E ++V A + L + ++ KR+
Sbjct: 60 SYADTNARIEH---FIK-LVDFKGEI--VFINEDNSSVEAYENLEHLG-NKNKRLAIKDG 112
Query: 135 KVDSIAAALILQEVLDRI 152
++DS++A IL+ ++
Sbjct: 113 RLDSLSACRILERYYQQV 130
>gi|317180766|dbj|BAJ58552.1| Holliday junction resolvase-like protein [Helicobacter pylori F32]
Length = 134
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ G P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAMLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNE 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
R+ F+ ++D K + VF DE +++ A + L + K+ + +
Sbjct: 60 SYADTNARIEH---FI-KLLDFKGEI--VFIDEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEVLDRI 152
+DS++A IL+ ++
Sbjct: 114 LDSLSACRILERYCQQV 130
>gi|223996479|ref|XP_002287913.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977029|gb|EED95356.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 242
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHP---RPFLVRKK----------VTQTALELLSFITT 65
+ +D+ +RIG+A+S+ + F+ P L++ + ++ LEL + +
Sbjct: 29 VMGLDITRERIGIAVSEHPKHFSEPLALNSILLQDRDSSSNRSKGIAKESLLELEAAVRK 88
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV-----PFVFW 109
++ AF++ PLN G G + + +++D+ V PF W
Sbjct: 89 HHVCAFVVNWPLN-EGRMGEQCGKVLQVLDSVMDQSNSVVTRKRPFTLW 136
>gi|53803468|ref|YP_114751.1| hypothetical protein MCA2335 [Methylococcus capsulatus str. Bath]
gi|62900953|sp|Q605E9|RUVX_METCA RecName: Full=Putative Holliday junction resolvase
gi|53757229|gb|AAU91520.1| conserved hypothetical protein TIGR00250 [Methylococcus capsulatus
str. Bath]
Length = 151
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D G + IG+A+ A P L + + + I A ++GL +
Sbjct: 15 GFDFGERNIGVAVGQSVTGTAAPLRTLRAQPSARLWAAISELIDQWLPAGLVVGLSHQQD 74
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV-DSI 139
GSE P T F + R +P DE LTT ++ + ++V D +
Sbjct: 75 GSENPITAPTLRFCRQLEGR-YRLPVYTVDETLTTAESRTHFYQRRRRKSVEFEQVKDEM 133
Query: 140 AAALILQ 146
AA LILQ
Sbjct: 134 AAQLILQ 140
>gi|219112769|ref|XP_002178136.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411021|gb|EEC50950.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 190
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGLPLN 78
+D G R G+A++ P+P + K + T+ ++ + E + ++GLPL+
Sbjct: 22 GVDYGLVRTGVAVT----VGYDPKPLTILKDLNATEVCDAVIRCVRLEQASRIVVGLPLH 77
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-----VPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
NG+ + + T FV + + + V +DER T+ +A N +
Sbjct: 78 KNGTIAEQTNLTLVFVAELAQKSLQELGPGVKVELFDERYTSKAAAARAHSRN-PHQPLY 136
Query: 134 QKVDSIAAALILQ 146
+D+ AA +IL+
Sbjct: 137 GTLDADAACIILE 149
>gi|261250167|ref|ZP_05942743.1| putative Holliday junction resolvase [Vibrio orientalis CIP 102891]
gi|260939283|gb|EEX95269.1| putative Holliday junction resolvase [Vibrio orientalis CIP 102891]
Length = 141
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 36/160 (22%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF---- 71
++ I + D GTK IG AI +++T TA L +F + I +
Sbjct: 2 SRTIMAFDFGTKSIGSAIG---------------QEITGTASPLKAFKANDGIPNWDDIE 46
Query: 72 -----------IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++GLP +++G + + N + + V DERL+T A+
Sbjct: 47 KQIKEWQPDLVVVGLPTDLHGRDLETITPRAKKFANRLHGRFGVAVELHDERLSTTEARA 106
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L M + VD +A +IL+ S+ E+ G
Sbjct: 107 DLFAMGGYKALSKGNVDCQSAVVILE------SWFEAQYG 140
>gi|188990810|ref|YP_001902820.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. campestris str. B100]
gi|226695316|sp|B0RQM9|RUVX_XANCB RecName: Full=Putative Holliday junction resolvase
gi|167732570|emb|CAP50764.1| Putative Hollyday junction resolvase [Xanthomonas campestris pv.
campestris]
Length = 155
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
Query: 12 SLKPNQPIASIDLGTKRIGLAIS---DPGRRFAHPRPFLVRKKVTQTALELLSFITTE-N 67
+++P+ + D+G++RIG+A+ G R ++ L + E
Sbjct: 6 AIRPDATVLGFDVGSRRIGVAVGTALGAGARAV----AVINVHANGPDWVALDRVHKEWR 61
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
A ++G PL ++ + P AF + +R +P V DER ++V A Q
Sbjct: 62 PAGLVVGDPLTLDDKDQPARKRAHAFARELRERYA-LPVVLIDERSSSVEAAQRFARERA 120
Query: 128 SRKKR 132
+KR
Sbjct: 121 DGRKR 125
>gi|307128596|ref|YP_003880626.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri CARI]
gi|306483058|gb|ADM89928.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri CARI]
Length = 138
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 19/140 (13%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID G KRIGL+I++ R A + + T LE+ ++ E+I +IGLP+
Sbjct: 4 ILCIDYGKKRIGLSITNSIRSIAFALNTVNTNDLIST-LEM--YLKYEDIDTIVIGLPIK 60
Query: 79 MNGSEGPRVHSTRAFVH-------NMIDRKVYVPFVFWDERLTTVSAQQILID--MNVSR 129
P + F+ N+I +++ DER T+ A L++ +
Sbjct: 61 YYNYLFPIEKKIKKFIKIIKYKYPNLIIKRL-------DERFTSKIANYYLLNSVFKKKK 113
Query: 130 KKRIQKVDSIAAALILQEVL 149
+K +D I+A L+LQ+ +
Sbjct: 114 RKNKSLLDKISATLLLQDYI 133
>gi|87303490|ref|ZP_01086273.1| hypothetical protein WH5701_09525 [Synechococcus sp. WH 5701]
gi|87281903|gb|EAQ73866.1| hypothetical protein WH5701_09525 [Synechococcus sp. WH 5701]
Length = 161
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + P + + ++D+G +RIGLA DP P L R L + +
Sbjct: 1 MSRQPPPPRSVLALDVGRRRIGLAGCDPLGLTVTPLAPLARGAFPADLERLRPLVAQRRV 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWDERLTTVSA 118
A ++GLPL+ S+ P V + + + + + +P + DE ++ A
Sbjct: 61 QALVVGLPLDA--SQQPTVQARHCRRYGQRLAQALELPLAWVDEHGSSWEA 109
>gi|13357930|ref|NP_078204.1| hypothetical protein UU370 [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|167971754|ref|ZP_02554031.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
ATCC 27818]
gi|168282623|ref|ZP_02690290.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
ATCC 33697]
gi|168308781|ref|ZP_02691456.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
ATCC 27813]
gi|170761903|ref|YP_001752453.1| hypothetical protein UPA3_0386 [Ureaplasma parvum serovar 3 str.
ATCC 27815]
gi|32130073|sp|Q9PQC1|RUVX_UREPA RecName: Full=Putative Holliday junction resolvase
gi|189046111|sp|B1AJ09|RUVX_UREP2 RecName: Full=Putative Holliday junction resolvase
gi|11356807|pir||E82899 conserved hypothetical UU370 [imported] - Ureaplasma urealyticum
gi|6899352|gb|AAF30779.1|AE002134_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|168827480|gb|ACA32742.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str.
ATCC 27815]
gi|171902629|gb|EDT48918.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
ATCC 27813]
gi|182675714|gb|EDT87619.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
ATCC 33697]
gi|186701151|gb|EDU19433.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
ATCC 27818]
Length = 147
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-----ELLSFITTENIAAFIIGL 75
++DLGTK G AISD A + ++ TA+ E++ E I ++G
Sbjct: 5 ALDLGTKSCGFAISDLLGIIASGLDNFIYEENDFTAVLAKIDEIMINYHHE-IDTIVLGY 63
Query: 76 PLNM-NGSEGPRVHSTRAFV-----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
P N+ +GS+ R + +F H + K+ + V+ DER +T A Q L + V
Sbjct: 64 PTNVYDGSKNERTYLIESFYALLKQHFLNHEKIKI--VYEDERFSTKIATQRLKNSCVKA 121
Query: 130 KKRIQKVDSIAAALILQEVLDRISF 154
K + D ++A +IL+ L + F
Sbjct: 122 AKIKKVKDKMSAVVILESYLSKNHF 146
>gi|262341228|ref|YP_003284083.1| Holliday junction resolvase-like protein [Blattabacterium sp.
(Blattella germanica) str. Bge]
gi|262272565|gb|ACY40473.1| Holliday junction resolvase-like protein [Blattabacterium sp.
(Blattella germanica) str. Bge]
Length = 140
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPL 77
I +D G GL+I+D + FA F + T+ + L SF+ E I +IGLP
Sbjct: 4 ILGMDYGKVITGLSITDDEQIFA----FGLDSVPTEKLMSFLESFLYHEKIDKIVIGLPK 59
Query: 78 NMNGSEGPRVHS-TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+N + + + + F+++ R + DER T+ A +I++ + +K+R + +
Sbjct: 60 KLNNQKETLIETDIQRFINHFRVRFPKILIERLDERFTSKMAFNAMIELGLKKKRRKKVI 119
Query: 137 -DSIAAALILQEVLDR 151
+ I+A +ILQ L R
Sbjct: 120 LNQISATIILQSYLAR 135
>gi|33865313|ref|NP_896872.1| hypothetical protein SYNW0779 [Synechococcus sp. WH 8102]
gi|62901007|sp|Q7U845|RUVX_SYNPX RecName: Full=Putative Holliday junction resolvase
gi|33632482|emb|CAE07294.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 157
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ S+D+G KRIGLA DP P L R + L + ++GLPL+
Sbjct: 7 VLSLDVGRKRIGLAGCDPLGITVTPIKALHRGRFDDDLPVLQQLCQDRRVQGLVVGLPLD 66
Query: 79 MNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTVSAQQ 120
G P + + + + + +P + +E +T +A +
Sbjct: 67 AAGQ--PTAQADHCLRYGRRLAQALQLPLAWVNEHSSTWAAGE 107
>gi|169835834|ref|ZP_02869022.1| DNA integration/recombination/invertion protein [candidate division
TM7 single-cell isolate TM7a]
Length = 75
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 104 VPFVFWDERLTTVSAQQILIDMNVSRK---KRIQKVDSIAAALILQEVLDRIS 153
+ F DER TT A+ L N S+K +R + VD +AA++ILQ+ LD ++
Sbjct: 25 IQIFFVDERYTTTEAEHYL--KNYSKKNGKERRKVVDMVAASIILQKYLDTLT 75
>gi|88608671|ref|YP_505909.1| hypothetical protein NSE_0006 [Neorickettsia sennetsu str.
Miyayama]
gi|88600840|gb|ABD46308.1| conserved hypothetical protein [Neorickettsia sennetsu str.
Miyayama]
Length = 159
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ SID G + +G+A+SDP R+ A ++ ++ + + I+G P +
Sbjct: 18 VISIDPGRRIVGVAVSDPELRYIQNYFQFTSHGRGADAFHIMKVVS--DFSGIIVGTPFS 75
Query: 79 MNGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ G + F + + RK P + DE +T +L ++ SR+K +
Sbjct: 76 HIRNNG-WLDFIDKFAQKLSEVTRK---PILMCDESSSTSDVMILLSSLSRSRQKEWK-- 129
Query: 137 DSIAAALILQEVLDRI 152
D IAA IL++ L I
Sbjct: 130 DKIAACCILEKTLCTI 145
>gi|317013781|gb|ADU81217.1| Holliday junction resolvase-like protein [Helicobacter pylori
Gambia94/24]
Length = 134
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ G P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLSDLLRKKNIQVLVVGKPNE 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
R+ F+ ++D K + VF +E ++V A + L + KK K
Sbjct: 60 SYADTHARIEH---FI-KLVDFKGEI--VFINEDNSSVEAYENLGYLGKKNKKLATKDGR 113
Query: 136 VDSIAAALILQEVLDRI 152
+DS++A IL+ ++
Sbjct: 114 LDSLSACRILERYCQQV 130
>gi|323448090|gb|EGB03993.1| hypothetical protein AURANDRAFT_67554 [Aureococcus anophagefferens]
Length = 548
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFII 73
+P +D G +R G+ + GR +A RP V + +T A +++ E AF++
Sbjct: 474 EPTLGVDFGLRRTGVCV---GRGYA-SRPLEVVENCGNLTAHAAAIVALALREGATAFVV 529
Query: 74 GLPLNMNGSE 83
GLPL+ +GSE
Sbjct: 530 GLPLDRDGSE 539
>gi|304413431|ref|ZP_07394904.1| putative GTPase [Candidatus Regiella insecticola LSR1]
gi|304284274|gb|EFL92667.1| putative GTPase [Candidatus Regiella insecticola LSR1]
Length = 457
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSF 62
ED+++ PI +DL KRI LA+ PG R A P FL R K+ T E ++
Sbjct: 80 EDILELQGHGGPIV-LDLLLKRI-LALPLPGLRIARPGEFLERAFLNNKIDLTQAEAVAD 137
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV--FWDERLTTVSAQQ 120
+ N ++ G R+ +AF N+ID + YV F +E + +S +
Sbjct: 138 LINANSEQAARSAVNSLQGVFSDRI---KAFSQNLIDLRAYVEAAMDFSEEEINFLSDGK 194
Query: 121 ILIDMN--VSRKKRIQ 134
I +N ++ K++Q
Sbjct: 195 IEGQLNNIINELKKVQ 210
>gi|317012175|gb|ADU82783.1| Holliday junction resolvase-like protein [Helicobacter pylori
Lithuania75]
Length = 134
Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A G P ++R+ Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAALLNG--VILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPNE 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
R+ F+ ++D K + VF +E +++ A + L + K+ + +
Sbjct: 60 SYADTNARIEH---FI-KLVDFKGEI--VFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEVLDRI 152
+DS++A IL+ ++
Sbjct: 114 LDSLSACRILERYCQQV 130
>gi|254779032|ref|YP_003057137.1| Holliday junction resolvase-like protein [Helicobacter pylori B38]
gi|254000943|emb|CAX28881.1| Putative holliday junction resolvase [Helicobacter pylori B38]
Length = 134
Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ G P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNE 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
R+ F+ ++D K + VF +E +++ A L + K+ + +
Sbjct: 60 SYADTNARIEH---FI-KLVDFKGEI--VFINEDRSSIEAYDNLEHLGRKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEVLDRI 152
+DS++A IL+ ++
Sbjct: 114 LDSLSACRILERYCQKV 130
>gi|72162468|ref|YP_290125.1| Holliday junction resolvase-like protein [Thermobifida fusca YX]
gi|134048664|sp|Q47N67|RUVX_THEFY RecName: Full=Putative Holliday junction resolvase
gi|71916200|gb|AAZ56102.1| Holliday junction resolvase YqgF [Thermobifida fusca YX]
Length = 159
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGLPLN 78
++D G RIG+A SDP A P + R + + A +L + E I+G P +
Sbjct: 8 AVDPGAARIGVARSDPDGILAIPVETIRRGPGDLDRIAALVLEYEARE----VIVGYPAS 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-------IDMNVSRKK 131
++G+EG + RAF + R VP DERLTTV+A+ L +
Sbjct: 64 LSGAEGRAARAARAFAKALARRLAPVPVRLVDERLTTVTAELHLRTGASYRKRGARGGRA 123
Query: 132 RIQKVDSIAAALILQEVLD 150
R +D AA ++LQ LD
Sbjct: 124 RRSVIDQAAATVLLQNALD 142
>gi|328772736|gb|EGF82774.1| hypothetical protein BATDEDRAFT_22908 [Batrachochytrium
dendrobatidis JAM81]
Length = 961
Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRR 39
ED +KSLK NQ + G ++IG+AISDP ++
Sbjct: 745 EDAIKSLKMNQAVIE-KTGDRKIGVAISDPTKK 776
>gi|15644962|ref|NP_207132.1| Holliday junction resolvase-like protein [Helicobacter pylori
26695]
gi|32130008|sp|O25101|RUVX_HELPY RecName: Full=Putative Holliday junction resolvase
gi|2313435|gb|AAD07403.1| conserved hypothetical protein [Helicobacter pylori 26695]
Length = 134
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A G P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAALLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHE 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
R+ F+ ++D K + VF +E +++ A + L + K+ + +
Sbjct: 60 SYADTNARIEH---FI-KLVDFKGEI--VFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEVLDRI 152
+DS++A IL+ ++
Sbjct: 114 LDSLSACRILERYCQKV 130
>gi|317179270|dbj|BAJ57058.1| Holliday junction resolvase-like protein [Helicobacter pylori F30]
Length = 134
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ G P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAMLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNE 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
R+ F+ ++D K + VF +E +++ A + L + K+ + +
Sbjct: 60 SYADTNARIEH---FI-KLLDFKGEI--VFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEVLDRI 152
+DS++A IL+ ++
Sbjct: 114 LDSLSACRILERYCQQV 130
>gi|194364719|ref|YP_002027329.1| Holliday junction resolvase-like protein [Stenotrophomonas
maltophilia R551-3]
gi|194347523|gb|ACF50646.1| Holliday junction resolvase YqgF [Stenotrophomonas maltophilia
R551-3]
Length = 164
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D+G++RIG+AI A + + I ++G PL
Sbjct: 22 VLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWTAIERLIKEWKPDGLVVGDPLT 81
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSRKKR 132
++G + P + F + +R +P V DER ++V +A++ ++ RK+R
Sbjct: 82 LDGQDQPNRKRAQGFARQLRER-FKLPVVMIDERSSSVEAARRFAVERAEGRKRR 135
>gi|188527140|ref|YP_001909827.1| Holliday junction resolvase-like protein [Helicobacter pylori
Shi470]
gi|226725528|sp|B2USG5|RUVX_HELPS RecName: Full=Putative Holliday junction resolvase
gi|188143380|gb|ACD47797.1| Holliday junction resolvase-like protein [Helicobacter pylori
Shi470]
Length = 134
Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ G P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLNDLLREKNIQVLVVGKPNE 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
R+ F+ ++D K + VF +E +++ A + L + K+ + +
Sbjct: 60 SYADTNARIEH---FIK-LLDFKGEI--VFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEVLDRI 152
+DS++A IL+ ++
Sbjct: 114 LDSLSACGILERYCQQV 130
>gi|207108735|ref|ZP_03242897.1| Holliday junction resolvase-like protein [Helicobacter pylori
HPKX_438_CA4C1]
Length = 156
Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 12/148 (8%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
DL S+ + I D+G KRIG+A+ G P ++R Q + +L + +N
Sbjct: 14 DLTSSIACKRLIIG-DVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLSDLLREKN 70
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I ++G P R+ + ++D K + VF +E +++ A + L +
Sbjct: 71 IQVLVVGKPNESYADTNARIE----YFIKLLDFKGEI--VFINEDRSSIEAYENLEHLGK 124
Query: 128 SRKK---RIQKVDSIAAALILQEVLDRI 152
K+ + ++DS++A IL+ ++
Sbjct: 125 KNKRLATKDGRLDSLSACRILERYCQQV 152
>gi|332673180|gb|AEE69997.1| Holliday junction resolvase family protein [Helicobacter pylori 83]
Length = 134
Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A G P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIATLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNE 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
R+ + ++D K + VF +E +++ A + L + K+ + +
Sbjct: 60 SYADTNARIE----YFIKLLDFKGEI--VFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEVLDRI 152
+DS++A IL+ ++
Sbjct: 114 LDSLSACRILERYCQQV 130
>gi|332524147|ref|ZP_08400377.1| Holliday junction resolvase-like protein [Rubrivivax
benzoatilyticus JA2]
gi|332107486|gb|EGJ08710.1| Holliday junction resolvase-like protein [Rubrivivax
benzoatilyticus JA2]
Length = 136
Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFIIGLPLNM 79
+ D G +R+G+A+ + A RP E ++ + E A ++G+P +
Sbjct: 15 AFDFGVRRVGVAVGNT--LLAEARPLKTVAAEGDARFEAIARLIDEWQPDALVVGVPFHP 72
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116
+G+E R F + R +P DER TTV
Sbjct: 73 DGAEHDNTRRARRFARQLHGR-FRLPVHEVDERYTTV 108
>gi|290999126|ref|XP_002682131.1| guanine nucleotide binding protein alpha subunit [Naegleria
gruberi]
gi|284095757|gb|EFC49387.1| guanine nucleotide binding protein alpha subunit [Naegleria
gruberi]
Length = 657
Score = 33.5 bits (75), Expect = 9.4, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN--MIDRKVYVPFVFWDERLTTVSAQ 119
+I T + +F +G+ L +N + + +T+ N M+D +Y F +D R+T++ ++
Sbjct: 300 YIITNLLQSFSLGVSLYLNEVDAIKNGTTKVTRENRFMLDETLYEKFKEFDSRVTSLQSR 359
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L D +S+ + + V S+ +++VL+R + +S
Sbjct: 360 YTLFD--ISKLPQKEFVVSMWEDTDVRKVLNRYALTDS 395
>gi|217033373|ref|ZP_03438804.1| hypothetical protein HP9810_9g126 [Helicobacter pylori 98-10]
gi|216944314|gb|EEC23739.1| hypothetical protein HP9810_9g126 [Helicobacter pylori 98-10]
Length = 134
Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ G P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAVLLNG--VILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNK 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
R+ F+ ++D K + VF +E +++ A + L + K+ + +
Sbjct: 60 SYTDTNARIEH---FI-KLLDFKGEI--VFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQ 146
+DS++A IL+
Sbjct: 114 LDSLSACRILE 124
Searching..................................................done
Results from round 2
>gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040653|gb|ACT57449.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
str. psy62]
Length = 160
Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats.
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL
Sbjct: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ
Sbjct: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG
Sbjct: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
>gi|315122522|ref|YP_004063011.1| Holliday junction resolvase YqgF [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495924|gb|ADR52523.1| Holliday junction resolvase YqgF [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 167
Score = 217 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 140/159 (88%), Positives = 152/159 (95%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MSILLIEDLVKSLKPNQPIASIDLGTK+IG+AISD GRRFAHPRPFL+RKK+TQTALELL
Sbjct: 1 MSILLIEDLVKSLKPNQPIASIDLGTKKIGIAISDLGRRFAHPRPFLIRKKITQTALELL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
SF TTENIAAF+IGLPLNMNGSEGPRV STRAFV NMIDR++ VPF+FWDERLTTVSAQQ
Sbjct: 61 SFATTENIAAFVIGLPLNMNGSEGPRVQSTRAFVQNMIDREINVPFIFWDERLTTVSAQQ 120
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
ILIDM+VSRKKR QKVDSIAA+LILQEVLDRIS L+SS+
Sbjct: 121 ILIDMDVSRKKRAQKVDSIAASLILQEVLDRISSLKSSE 159
>gi|307946447|ref|ZP_07661782.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4]
gi|307770111|gb|EFO29337.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4]
Length = 160
Score = 207 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
L ++D + L PN + +DLGTK IGLA+SD GR A P + RKK TQ A +LL
Sbjct: 5 PALSLDDFLSVLPPNSRLIGLDLGTKTIGLALSDLGRGIATPMETIRRKKFTQDAEKLLD 64
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ ++ ++GLPLNM+GSEGPR +TRAF N+ +K +P +WDERL+T + +
Sbjct: 65 ICAKQEVSGLVLGLPLNMDGSEGPRAQATRAFCRNL-SQKTELPITYWDERLSTAAVTRT 123
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SR KR + VD +AAA ILQ LDR+ + +S
Sbjct: 124 LLEADSSRAKRAEVVDKMAAAFILQGFLDRLGHMGAS 160
>gi|310816166|ref|YP_003964130.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare
Y25]
gi|308754901|gb|ADO42830.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare
Y25]
Length = 156
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +ED +L P + + +DLGT IG+A+SD A P + RKK + A LL
Sbjct: 1 MICESVEDFAAALPPMRAVCGLDLGTVTIGVAVSDLMLSVASPLETIKRKKFSLDAEALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I NIA ++GLPLNM+GSEGPR STRAF N+ R +P V+WDERL+TV+A++
Sbjct: 61 KIIAARNIAGIVLGLPLNMDGSEGPRAQSTRAFARNL-SRLTDLPIVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ + SRK+R + +D +AA ILQ VLDR+ L
Sbjct: 120 ALLEADTSRKRRDEVIDHVAAGFILQGVLDRLRHLRR 156
>gi|328543472|ref|YP_004303581.1| endonuclease involved in recombination [polymorphum gilvum
SL003B-26A1]
gi|326413216|gb|ADZ70279.1| Predicted endonuclease involved in recombination [Polymorphum
gilvum SL003B-26A1]
Length = 166
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
L +ED V +L P + +DLGT+ IGLA+SD GR A P + R+K T A +LL
Sbjct: 5 PSLSLEDFVAALAPGTRLIGLDLGTRTIGLALSDLGRGIASPLETIRRRKFTLDAEQLLK 64
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ ++GLPLNM+GSEGPRV +TRAF N+ ++ +P +WDERL+T + +
Sbjct: 65 ICAEHRVGGLVLGLPLNMDGSEGPRVQATRAFARNLAEK-TDLPITYWDERLSTAAVTRT 123
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
LI+ + SR +R + VD +AAA ILQ LDR+ +L S+
Sbjct: 124 LIEADRSRARRAELVDKMAAAYILQGFLDRLGYLSRSR 161
>gi|254465560|ref|ZP_05078971.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
Y4I]
gi|206686468|gb|EDZ46950.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
Y4I]
Length = 157
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 64/153 (41%), Positives = 97/153 (63%), Gaps = 1/153 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
ED +L P + +DLGTK IG+A+SD A P + RKK + A LL I
Sbjct: 6 FEDFAAALPPMSALMGLDLGTKTIGVAVSDRIGAVATPLETVKRKKFSTDAARLLEIIQA 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+I+ ++GLP NM+G+EGPR STRAF N++ + +P FWDERL+TV+A++ L++
Sbjct: 66 RDISGILLGLPRNMDGTEGPRCQSTRAFARNLM-QLTDLPISFWDERLSTVAAEKALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ +RK+R + +D +AA+ ILQ LDR+ L++
Sbjct: 125 DTTRKRRAEVIDHVAASYILQGALDRMRHLKNG 157
>gi|327192100|gb|EGE59078.1| holliday junction resolvase protein [Rhizobium etli CNPAF512]
Length = 164
Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 89/160 (55%), Positives = 119/160 (74%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAAKEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|15965062|ref|NP_385415.1| hypothetical protein SMc01355 [Sinorhizobium meliloti 1021]
gi|307301133|ref|ZP_07580902.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti BL225C]
gi|32130055|sp|Q92QL0|RUVX_RHIME RecName: Full=Putative Holliday junction resolvase
gi|15074241|emb|CAC45888.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306904088|gb|EFN34674.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti BL225C]
Length = 165
Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 89/159 (55%), Positives = 116/159 (72%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL +E+L + L P Q +A +DLGTK IG+++SD GRRFA PR + R K A LL
Sbjct: 1 MAILTMEELAERLPPYQSVAGLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
SF E IAAFIIGLP+NM+GSEGPR +TRAFV NM K +PFV WDERL+TV+A++
Sbjct: 61 SFAEKEKIAAFIIGLPVNMDGSEGPRCQATRAFVRNM-GEKTDIPFVLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+LI+M+VSRKKR +++DS AA+ ILQ LDR++ L
Sbjct: 120 VLIEMDVSRKKRAERIDSAAASFILQGALDRLASLARGA 158
>gi|254474193|ref|ZP_05087584.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062]
gi|211956723|gb|EEA91932.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062]
Length = 165
Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 67/153 (43%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
L +ED +L + + IDLGTK IGLA++D GR+ A P + RKK TQ LL
Sbjct: 5 PSLSLEDFCDALYDDDRLIGIDLGTKTIGLALTDSGRQIASPLETIKRKKFTQDVERLLD 64
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ +IGLPLNM+G+EGPR +TRAFV N+ +K +P +WDERL+T + +
Sbjct: 65 LCHEHGVFGLVIGLPLNMDGTEGPRCQATRAFVRNLA-QKTEIPITYWDERLSTAAVTRT 123
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
LI+ + SR +R + VD +AA ILQ LDR+++
Sbjct: 124 LIEADRSRARRAELVDKMAATYILQGFLDRVNY 156
>gi|163759344|ref|ZP_02166430.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43]
gi|162283748|gb|EDQ34033.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43]
Length = 162
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 85/159 (53%), Positives = 119/159 (74%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ +EDL L P Q IA +DLGTK IGLA+SD R A PRP + R+K T A++LL
Sbjct: 1 MAVMEVEDLEAFLTPGQTIAGLDLGTKTIGLAVSDLSRSLASPRPVIKRRKFTLDAIDLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + + A +IGLP+NM+GSEGPRV +TRAFV NMI++ +PFVFWDERL+TV+A++
Sbjct: 61 TALKRDQVGAVVIGLPVNMDGSEGPRVQATRAFVRNMIEK-TDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
LI+M+VSRKKR +++DS AA+ ILQ LDR+ L ++
Sbjct: 120 ALIEMDVSRKKRAERIDSAAASFILQGALDRLQGLRAAA 158
>gi|114765456|ref|ZP_01444566.1| hypothetical protein 1100011001321_R2601_10219 [Pelagibaca
bermudensis HTCC2601]
gi|114542166|gb|EAU45197.1| hypothetical protein R2601_10219 [Roseovarius sp. HTCC2601]
Length = 158
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IED +L ++ +A +DLGTK IG+A+SD A P + RKK T A LL
Sbjct: 1 MIHDEIEDFAAALPRDRALAGLDLGTKTIGVAVSDRLLTVATPLETVKRKKFTLDAERLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I ++GLP NM+GSEGPR STRAF N R P FWDERL+TV+A++
Sbjct: 61 EILVKREIGGVVLGLPRNMDGSEGPRCQSTRAFARNF-SRLWDGPVTFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SR KR + +D +AA+ ILQ LDR+ L ++
Sbjct: 120 ALLEADTSRAKRAELIDHVAASYILQGALDRLRHLRAN 157
>gi|86357479|ref|YP_469371.1| holliday junction resolvase protein [Rhizobium etli CFN 42]
gi|146325597|sp|Q2K942|RUVX_RHIEC RecName: Full=Putative Holliday junction resolvase
gi|86281581|gb|ABC90644.1| probable holliday junction resolvase protein [Rhizobium etli CFN
42]
Length = 164
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 90/160 (56%), Positives = 121/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ + L P Q IA +DLGTK IGL+ISD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEIAEILPPGQAIAGLDLGTKTIGLSISDLGRRFATPRPVIRRIKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F + E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PF++WDERL+TV+A++
Sbjct: 61 DFASAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFIYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+LI+M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 VLIEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSAG 159
>gi|190891542|ref|YP_001978084.1| holliday junction resolvase [Rhizobium etli CIAT 652]
gi|226731642|sp|B3PXX0|RUVX_RHIE6 RecName: Full=Putative Holliday junction resolvase
gi|190696821|gb|ACE90906.1| holliday junction resolvase protein [Rhizobium etli CIAT 652]
Length = 164
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 89/160 (55%), Positives = 118/160 (73%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F E +A F+IGLP+NM+GS GPRV +TRAFV NM + K +PFV+WDERL+TV+A++
Sbjct: 61 DFAAKERVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EEKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|86138500|ref|ZP_01057074.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193]
gi|85825025|gb|EAQ45226.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193]
Length = 157
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ED +L +A +D G K +G+AISD A P + RKK T A L
Sbjct: 1 MIYDEFEDFAAALPGFTALAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDADHLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I ++GLP NM+GSEGPR TRAF N+ R +P FWDERL+TV+A++
Sbjct: 61 EIVKKREIGGLVLGLPRNMDGSEGPRCQKTRAFARNL-SRLTELPIGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ + SRK+R + +D +AA+ ILQ LDR+ L++
Sbjct: 120 ALLEADTSRKRRAELIDHVAASYILQGALDRMRHLKN 156
>gi|149913939|ref|ZP_01902471.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b]
gi|149812223|gb|EDM72054.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b]
Length = 158
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 68/159 (42%), Positives = 99/159 (62%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +L PI +DLGTK IG+AISD A P + RKK + A LL
Sbjct: 1 MICETIGAFAMTLPKGHPIMGLDLGTKTIGVAISDRLLSVATPTETIKRKKFSVDAARLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
T +A ++GLP NM+GSEGPR STRAF N+ + +P FWDERL+TV+A++
Sbjct: 61 EIATQREVAGLVLGLPRNMDGSEGPRCQSTRAFARNL-EPLTELPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
L++ + SRK+R + +D++AA+ ILQ VLDR++ + +++
Sbjct: 120 ALLEADTSRKRRAEVIDNVAASYILQGVLDRLTHMRAAQ 158
>gi|218661529|ref|ZP_03517459.1| holliday junction resolvase protein [Rhizobium etli IE4771]
Length = 166
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P + IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 3 MTVLTIEEMAATLAPGKAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALL 62
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F TE +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 63 DFAATEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 121
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 122 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSAG 161
>gi|90417721|ref|ZP_01225633.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90337393|gb|EAS51044.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 156
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 78/157 (49%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ +E+ ++ + IA +DLGTK IGLA+SD G+RFA PR L R K T A L+
Sbjct: 1 MAIVSLEEFADAVPSGKTIAGLDLGTKTIGLAVSDRGQRFATPRKVLRRTKFTADANALV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +NI +IGLPLNM+GSEGPR +TRAF+ N R P + WDERL+TV+A++
Sbjct: 61 AALNEDNIVGIVIGLPLNMDGSEGPRAQATRAFLRN-YSRFDERPVLLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ +VSRKKR +++DS AA+ ILQ LDR+S L S
Sbjct: 120 GLLEADVSRKKRAERIDSAAASFILQGALDRLSSLRS 156
>gi|241204443|ref|YP_002975539.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240858333|gb|ACS56000.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 164
Score = 200 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 88/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PR + R K T A LL
Sbjct: 1 MTVLTIEEMAETLVPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F +E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|6226491|sp|Q52673|RUVX_RHOCA RecName: Full=Putative Holliday junction resolvase
gi|1353874|gb|AAB01816.1| unknown [Rhodobacter capsulatus]
Length = 159
Score = 200 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 67/160 (41%), Positives = 102/160 (63%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++D +L +A +DLGTK IG+A+SD R A P + R+K T +L+
Sbjct: 1 MICPGMDDFAAALPRVGALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFTLDVADLM 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ IA F++GLP+NM+GSEGPR STRAF N+ ++ +P FWDERL+TV+A++
Sbjct: 61 KTVAERQIAGFVLGLPVNMDGSEGPRAQSTRAFARNL-EKLTPLPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+++ ++SRK+R + VD +AA ILQ LDR++ L + G
Sbjct: 120 AMLEADLSRKRRAELVDHVAAGFILQGALDRLAHLGRAHG 159
>gi|119383262|ref|YP_914318.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222]
gi|167012745|sp|A1AZC8|RUVX_PARDP RecName: Full=Putative Holliday junction resolvase
gi|119373029|gb|ABL68622.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222]
Length = 158
Score = 200 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 67/159 (42%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +E ++L +A +DLGTK IG+A+SD R A P + R K T A LL
Sbjct: 1 MICENVETFAEALPRTGAVAGLDLGTKTIGVAVSDGLRGVASPLTVIRRTKFTADAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + ++GLP NM+GSEGPR STRAF N+ +R +P FWDERL+TV+A++
Sbjct: 61 KIVQDRALVGLVLGLPRNMDGSEGPRAQSTRAFARNL-ERLTPLPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
L++ + SRK+R + +D +AA ILQ LDR+ FL ++
Sbjct: 120 ALLEGDTSRKRRAEVIDQVAAGYILQGALDRLRFLGRTE 158
>gi|163739973|ref|ZP_02147378.1| Holliday junction resolvase YqgF [Phaeobacter gallaeciensis BS107]
gi|163743191|ref|ZP_02150573.1| hypothetical protein RG210_14860 [Phaeobacter gallaeciensis 2.10]
gi|161383608|gb|EDQ07995.1| hypothetical protein RG210_14860 [Phaeobacter gallaeciensis 2.10]
gi|161386718|gb|EDQ11082.1| Holliday junction resolvase YqgF [Phaeobacter gallaeciensis BS107]
Length = 157
Score = 200 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M E ++ PIA +D G K +G+AISD A P + RKK T A L
Sbjct: 1 MIYDDFETFAAAVPNFTPIAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDAARLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + A ++GLP NM+G+EGPR TRAF N+ +P FWDERL+TV+A++
Sbjct: 61 EIVKDREVGALLLGLPRNMDGTEGPRCQKTRAFARNLAK-LTELPIGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SRK+R + +D +AA+ ILQ LDR+ +++
Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGALDRMRHIKAG 157
>gi|260428035|ref|ZP_05782014.1| conserved hypothetical protein [Citreicella sp. SE45]
gi|260422527|gb|EEX15778.1| conserved hypothetical protein [Citreicella sp. SE45]
Length = 157
Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IE+ L P + +A +DLGTK IG+A+SD A P + RKK TQ A L+
Sbjct: 1 MIHEQIEEFAAILPPMRALAGLDLGTKTIGVALSDRLLTVATPLETVKRKKFTQDAARLV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ IA ++GLP NM+GSEGPR STRAF N + P FWDERL+TV+A++
Sbjct: 61 EILRQREIAGVVLGLPRNMDGSEGPRCQSTRAFARNF-SQLWDGPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SR+KR + +D +AA+ ILQ VLDR+ L S+
Sbjct: 120 ALLEADTSRRKRAELIDHVAASYILQGVLDRLRNLRSA 157
>gi|118590189|ref|ZP_01547592.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614]
gi|118437161|gb|EAV43799.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614]
Length = 162
Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 69/159 (43%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
L +ED V ++ + +DLGTK IGLA+SD G A P + RKK T A +LL+
Sbjct: 5 PALSLEDFVAAVPARTRLIGLDLGTKTIGLALSDLGLGIASPMETIRRKKFTLDAEQLLT 64
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ + ++GLPLNM+GSEGPR +TRAFV N+ +K +P +WDERL+T + +
Sbjct: 65 ICAKQGVGGIVLGLPLNMDGSEGPRAQATRAFVRNL-SQKTDLPITYWDERLSTAAVTRT 123
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++ + SR KR VD +AAA ILQ LDR+ F+ G
Sbjct: 124 LLEADTSRAKRADVVDKMAAAYILQGFLDRLGFMGLDNG 162
>gi|307317866|ref|ZP_07597304.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83]
gi|306896628|gb|EFN27376.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83]
Length = 165
Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 88/159 (55%), Positives = 115/159 (72%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL +E+L + L P Q +A +DLGTK IG+++SD GRRFA PR + R K A LL
Sbjct: 1 MAILTMEELAERLPPYQSVAGLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
SF E IAAFIIGLP+NM+GSEGPR +TRAFV M K +PFV WDERL+TV+A++
Sbjct: 61 SFAEKEKIAAFIIGLPVNMDGSEGPRCQATRAFVRTM-GEKTDIPFVLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+LI+M+VSRKKR +++DS AA+ ILQ LDR++ L
Sbjct: 120 VLIEMDVSRKKRAERIDSAAASFILQGALDRLASLARGA 158
>gi|209549118|ref|YP_002281035.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|226731643|sp|B5ZMI7|RUVX_RHILW RecName: Full=Putative Holliday junction resolvase
gi|209534874|gb|ACI54809.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 163
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 89/160 (55%), Positives = 121/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A L+
Sbjct: 1 MTVLTIEEMAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALM 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F T E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFATAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|254477517|ref|ZP_05090903.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11]
gi|214031760|gb|EEB72595.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11]
Length = 157
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M E ++ PIA +D G K +G+AISD A P + RKK T A +L
Sbjct: 1 MIYDDFEAFAAAVPSLSPIAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDAEKLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I A ++GLP NM+G+EGPR TRAF N+ + +P FWDERL+TV+A++
Sbjct: 61 EIVKAREIGALLLGLPRNMDGTEGPRCQKTRAFARNL-SQLTDLPIGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SRK+R + +D +AA+ ILQ LDR+ L++
Sbjct: 120 ALLEADTSRKRRSEVIDHVAASYILQGALDRMRHLKTG 157
>gi|294677840|ref|YP_003578455.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003]
gi|294476660|gb|ADE86048.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003]
Length = 159
Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 102/160 (63%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++D +L +A +DLGTK IG+A+SD R A P + R+K + +L+
Sbjct: 1 MICPGMDDFAAALPRVGALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFSLDLADLM 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ IA F++GLP+NM+GSEGPR STRAF N+ ++ +P FWDERL+TV+A++
Sbjct: 61 KTVAERQIAGFVLGLPVNMDGSEGPRAQSTRAFARNL-EKLTPLPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+++ ++SRK+R + VD +AA ILQ LDR++ L + G
Sbjct: 120 AMLEADLSRKRRAELVDHVAAGFILQGALDRLAHLGRAHG 159
>gi|259418877|ref|ZP_05742794.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
gi|259345099|gb|EEW56953.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
Length = 157
Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats.
Identities = 65/153 (42%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
ED +L + +D G K IG+A+SD A P + RKK T + LL I+
Sbjct: 6 FEDFAATLPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIISG 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+I I+GLP NM+GSEGPR STRAF N+ R +P FWDERL+TV+A++ L++
Sbjct: 66 RDINGIILGLPRNMDGSEGPRCQSTRAFARNL-SRVTDLPIGFWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ SRK+R + +D +AA+ ILQ LDR+ ++S
Sbjct: 125 DTSRKRRAEVIDHVAASYILQGALDRLRHIKSG 157
>gi|260433278|ref|ZP_05787249.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417106|gb|EEX10365.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 154
Score = 199 bits (508), Expect = 9e-50, Method: Composition-based stats.
Identities = 66/150 (44%), Positives = 92/150 (61%), Gaps = 1/150 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
E+ +L P Q + +DLG K IG+A+SD R A P + RKK + LL T
Sbjct: 6 FEEFAAALPPMQALMGLDLGEKTIGVAVSDRMRGVASPLETVRRKKFKLDSARLLEIATD 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I ++GLP NM+GSEGPR STRAF N+ + +P FWDERL+TV+A++ L++
Sbjct: 66 REIGGIVLGLPRNMDGSEGPRCQSTRAFARNL-SQLTDIPIGFWDERLSTVAAKKALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ +RK+R Q +D +AA ILQ LDR+ FL
Sbjct: 125 DTTRKRRGQVIDHVAAGYILQGALDRLRFL 154
>gi|222148317|ref|YP_002549274.1| Holliday junction resolvase-like protein [Agrobacterium vitis S4]
gi|254767491|sp|B9JVI8|RUVX_AGRVS RecName: Full=Putative Holliday junction resolvase
gi|221735305|gb|ACM36268.1| holliday junction resolvase protein [Agrobacterium vitis S4]
Length = 158
Score = 199 bits (508), Expect = 9e-50, Method: Composition-based stats.
Identities = 88/158 (55%), Positives = 119/158 (75%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ L IE+L +SL+P Q +A +DLGTK IGLA+SD GRRFA PR + R K T+ A LL
Sbjct: 1 MATLEIEELAQSLQPGQAVAGLDLGTKTIGLAMSDLGRRFASPRTVIKRTKFTKDAEVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+F E +AAF+IGLP+NM+GS GPRV +TRAFV M ++ +PFV+WDERL+TV+A +
Sbjct: 61 AFAAKEKVAAFVIGLPINMDGSSGPRVQATRAFVRAMAEK-TDIPFVYWDERLSTVAATR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++M+VSR KR +++DS AA+ ILQ LDR+S L S+
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSGLAST 157
>gi|126729458|ref|ZP_01745272.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37]
gi|126710448|gb|EBA09500.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37]
Length = 156
Score = 199 bits (508), Expect = 9e-50, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IE +L P Q + +DLGTK IG+A+SD R A P + RKK A L
Sbjct: 1 MIHETIEGFAAALPPMQALMGLDLGTKTIGVAVSDGLRSVATPLETVKRKKFGVDAERLQ 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I I I+GLP NM+G+EGPR STRAF N P +WDERL+TV+A++
Sbjct: 61 ALIAGRRIGGLILGLPRNMDGTEGPRCQSTRAFARNFA-ALWDGPIGYWDERLSTVAAEK 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ + +RK+R + +D +AA+ ILQ LDR+ FL +
Sbjct: 120 ALLEADTTRKRRAEVIDHVAASYILQGALDRLRFLGA 156
>gi|116251833|ref|YP_767671.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
bv. viciae 3841]
gi|146325598|sp|Q1MHJ8|RUVX_RHIL3 RecName: Full=Putative Holliday junction resolvase
gi|115256481|emb|CAK07565.1| putative Holliday junction resolvase [Rhizobium leguminosarum bv.
viciae 3841]
Length = 164
Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 87/160 (54%), Positives = 119/160 (74%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PR + R K A LL
Sbjct: 1 MTVLTIEEMAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFAIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F +E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|222085624|ref|YP_002544154.1| holliday junction resolvase protein [Agrobacterium radiobacter K84]
gi|254767490|sp|B9JDM7|RUVX_AGRRK RecName: Full=Putative Holliday junction resolvase
gi|221723072|gb|ACM26228.1| holliday junction resolvase protein [Agrobacterium radiobacter K84]
Length = 164
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 91/155 (58%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ L IEDL L P Q IA +DLGTK IGLA+SD GRRFA PRP + R K TQ A LL
Sbjct: 1 MTTLTIEDLAVMLLPGQAIAGLDLGTKTIGLAMSDLGRRFATPRPVIKRVKFTQDAQTLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+F E +AAF+IGLP+NM+GS GPRV +TRAFV +M D+ +PFV+WDERL+TV+A++
Sbjct: 61 AFAEKEKVAAFVIGLPMNMDGSTGPRVQATRAFVRSMADK-TALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L++M+VSR KR +++DS AA+ ILQ LDR+S L
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSAL 154
>gi|110633714|ref|YP_673922.1| Holliday junction resolvase YqgF [Mesorhizobium sp. BNC1]
gi|118597215|sp|Q11IL8|RUVX_MESSB RecName: Full=Putative Holliday junction resolvase
gi|110284698|gb|ABG62757.1| Holliday junction resolvase YqgF [Chelativorans sp. BNC1]
Length = 160
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 85/160 (53%), Positives = 112/160 (70%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MS++ IE+L K+ +P+A +DLGTK IG+AISD G FA PR +L RKK + A LL
Sbjct: 1 MSVVSIEELEKARAYGRPLAGLDLGTKTIGVAISDLGLSFATPRAYLPRKKFQEDAKALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++ EN I+GLP+NM+GSEGPR STRAFV N+ +PF FWDERL+TV+A++
Sbjct: 61 HLLSRENAGGVIVGLPINMDGSEGPRAQSTRAFVRNL-QPLTKLPFAFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
LI+M+VSR KR Q++DS AAA ILQ LDR+ L + G
Sbjct: 120 ALIEMDVSRAKRAQRIDSAAAAFILQGALDRLQALRADPG 159
>gi|99080808|ref|YP_612962.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040]
gi|124107444|sp|Q1GI16|RUVX_SILST RecName: Full=Putative Holliday junction resolvase
gi|99037088|gb|ABF63700.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040]
Length = 157
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 65/153 (42%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
ED +L + +D G K IG+A+SD A P + RKK T + LL I
Sbjct: 6 FEDFAAALPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLLEIIAG 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+I ++GLP NM+GSEGPR STRAF N+ R +P FWDERL+TV+A++ L++
Sbjct: 66 RDINGILLGLPRNMDGSEGPRCQSTRAFARNL-SRVTDLPIGFWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ SRK+R + +D +AA+ ILQ LDR+ + SS
Sbjct: 125 DTSRKRRAEVIDHVAASYILQGALDRMRHIRSS 157
>gi|254439741|ref|ZP_05053235.1| conserved hypothetical protein TIGR00250 [Octadecabacter
antarcticus 307]
gi|198255187|gb|EDY79501.1| conserved hypothetical protein TIGR00250 [Octadecabacter
antarcticus 307]
Length = 162
Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + D +L P P+A +DLGTK IG+A+SD G A P + R K AL L
Sbjct: 1 MIFEDVIDFAAALPPYAPLAGLDLGTKTIGVAVSDGGLTIASPLETIKRSKFQADALRLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ IA ++GLP NM+GSEGPR STRAF N+ R +P +WDERL+TV+A++
Sbjct: 61 EITSHRAIAGIVLGLPRNMDGSEGPRAQSTRAFARNL-SRLTDLPITYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SRK+R + +D++AA++ILQ +LDR+ +++
Sbjct: 120 ALLEADTSRKRRAEVIDNVAASIILQGMLDRLRNIKAQ 157
>gi|83952340|ref|ZP_00961071.1| putative endonuclease involved in recombination [Roseovarius
nubinhibens ISM]
gi|83836013|gb|EAP75311.1| putative endonuclease involved in recombination [Roseovarius
nubinhibens ISM]
Length = 158
Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 62/153 (40%), Positives = 91/153 (59%), Gaps = 1/153 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
E + L + +DLGTK +G+A+SD R A P + R+K T A L I
Sbjct: 6 FESFAEGLPAMGALMGLDLGTKTVGVAVSDGMRGVATPLETVKRQKFTLDAARLQELIAA 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
++ ++GLP NM+GSEGPR STRAF N + +P FWDERL+TV+A++ L++
Sbjct: 66 RSVVGVVLGLPRNMDGSEGPRCQSTRAFARNFA-QLTDLPIGFWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ SRK+R + +D +AA+ ILQ LDR+ + S
Sbjct: 125 DTSRKRRAEVIDHVAASYILQGALDRLRHIGRS 157
>gi|84517362|ref|ZP_01004716.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53]
gi|84508842|gb|EAQ05305.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53]
Length = 158
Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 67/159 (42%), Positives = 100/159 (62%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ED L + +A +DLGT IG+A+SD R A P + R+K T A L
Sbjct: 1 MICATPEDFAAQLPRHGAVAGLDLGTVTIGVAVSDLMRSVATPLETIKRRKFTLDAARLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
T IA ++GLP NM+GSEGPR +TRAF N+ ++ +P FWDERL+TV+A++
Sbjct: 61 EITTHRMIAGLVLGLPRNMDGSEGPRCQATRAFARNL-EKLTPLPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+++ ++SRK+R +++D+IAA+ ILQ +LDR+ LE+
Sbjct: 120 AMLEADMSRKRRAERIDNIAASYILQGMLDRLRHLEARA 158
>gi|56697209|ref|YP_167573.1| Holliday junction resolvase-like protein [Ruegeria pomeroyi DSS-3]
gi|62900907|sp|Q5LQY2|RUVX_SILPO RecName: Full=Putative Holliday junction resolvase
gi|56678946|gb|AAV95612.1| conserved hypothetical protein TIGR00250 [Ruegeria pomeroyi DSS-3]
Length = 154
Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 68/155 (43%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +E+ +L P +A +DLG K IG+A+SD R A P + RKK A LL
Sbjct: 1 MICETVEEFAAALPPFSALAGLDLGDKTIGVAVSDRMRGVATPLETIRRKKFGLDASALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + IA ++GLP NM+GSEGPR STRAF N+ R V FWDERL+TV+A++
Sbjct: 61 AIVEQREIAGIVLGLPRNMDGSEGPRCQSTRAFARNL-SRLTEVAITFWDERLSTVAAEK 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L++ + +RK+R + +D +AAA ILQ LDR+ L
Sbjct: 120 ALLEADTTRKRRSEVIDHVAAAYILQGALDRLRNL 154
>gi|325292676|ref|YP_004278540.1| Holliday junction resolvase [Agrobacterium sp. H13-3]
gi|325060529|gb|ADY64220.1| putative Holliday junction resolvase [Agrobacterium sp. H13-3]
Length = 159
Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats.
Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL IE+L ++L+P Q IA +DLGTK IGLA+SD RRFA PRP + R K T+ A LL
Sbjct: 1 MAILTIEELAETLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTRDAEVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+F E ++AFIIGLP+NM+GS GPR +TRAFV M K +PF+FWDERL+TV+A++
Sbjct: 61 AFAEKEKVSAFIIGLPINMDGSAGPRAQATRAFVRTM-GEKTALPFIFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+L++M+VSR KR +++DS AA+ ILQ LDR+S L + G
Sbjct: 120 VLLEMDVSRAKRAERIDSAAASFILQGALDRLSALARATG 159
>gi|260575164|ref|ZP_05843165.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2]
gi|259022786|gb|EEW26081.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2]
Length = 160
Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats.
Identities = 71/161 (44%), Positives = 98/161 (60%), Gaps = 2/161 (1%)
Query: 1 MSIL-LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
MS+L IE+ +L + +A +D G K IG+A+SD R A P + R K T A L
Sbjct: 1 MSVLETIEEFAATLPARRAVAGLDFGEKTIGVAVSDLSRSVATPLLTIRRVKFTDDAAAL 60
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
IT IA I+GLP NM+GSEGPR +TRAF N+ R +P FWDERL+TV+A
Sbjct: 61 AKIITERQIAGLILGLPRNMDGSEGPRAQATRAFARNL-SRLTPLPIGFWDERLSTVAAT 119
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ L++ + SRK+R + +D +AA ILQ VLDR++ + G
Sbjct: 120 RALLEADTSRKRRAEVIDHVAAGYILQGVLDRMAHMTREAG 160
>gi|126739041|ref|ZP_01754735.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6]
gi|126719658|gb|EBA16366.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6]
Length = 157
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IE+ +++ +A +D G K IG+AISD A P + RKK T A L
Sbjct: 1 MICETIEEFAQAVPGFTALAGLDFGEKTIGIAISDRIGAVATPLETIRRKKFTLDAERLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I ++GLP NM+GSEGPR TRAF N+ ++ +P FWDERL+TV+A++
Sbjct: 61 EITKAREIGGLVLGLPRNMDGSEGPRCQKTRAFARNL-EKLTELPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SRK+R + +D +AA+ ILQ LDR+ ++
Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGALDRMRHMKDG 157
>gi|146277916|ref|YP_001168075.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
ATCC 17025]
gi|167012753|sp|A4WTQ6|RUVX_RHOS5 RecName: Full=Putative Holliday junction resolvase
gi|145556157|gb|ABP70770.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC
17025]
Length = 160
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IE+ + +L + + +DLGTK IG+A++D RR A P + R K T+ A L
Sbjct: 1 MIHESIEEFLAALPRSGALIGLDLGTKTIGVAVTDGLRRIATPLLTIRRTKFTEDAARLR 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + ++GLP NM+GSEGPR STRAF N+ + + +P +WDERL+TV+A++
Sbjct: 61 AITAERGLVGIVLGLPRNMDGSEGPRAQSTRAFARNL-SQVLPLPIGYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
LI+ + SRK+R + +D +AA ILQ VLDR+ +L +
Sbjct: 120 ALIEADTSRKRRAEVIDHVAAGYILQGVLDRLDWLGRER 158
>gi|254485728|ref|ZP_05098933.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101]
gi|214042597|gb|EEB83235.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101]
Length = 161
Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 96/160 (60%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I D +L P Q + +DLG K IG+A++D A P + RKK A L
Sbjct: 1 MIYDDITDFAAALPPMQALIGLDLGEKTIGVAVTDSFLSVATPLETVRRKKFGLDAALLT 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I I I+GLP NM+GSEGPR STRAF N D+ V +P FWDERL+TV+A++
Sbjct: 61 QIIADRRIGGVILGLPRNMDGSEGPRCQSTRAFARNF-DKLVDLPIGFWDERLSTVAAEK 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++ + SRK+R + +D +AA+ ILQ VLDR+S L + G
Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGVLDRLSVLRAKGG 159
>gi|254504549|ref|ZP_05116700.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii
DFL-11]
gi|222440620|gb|EEE47299.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii
DFL-11]
Length = 161
Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats.
Identities = 67/154 (43%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
L +ED + ++ + +DLGTK IGLA+SD GR A P + RKK T A +LL
Sbjct: 5 PTLSLEDFIAAVPDRTRLIGLDLGTKTIGLALSDLGRGIASPMETIRRKKFTLDAEQLLK 64
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ + ++GLPLNM+G+EGPRV +TRAF N+ + +P FWDERL+T + +
Sbjct: 65 ICNEQGVGGLVLGLPLNMDGTEGPRVQATRAFTRNLAPK-TDLPMTFWDERLSTAAVTRT 123
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L++ + SR KR + VD +AAA ILQ LDR+ F+
Sbjct: 124 LLEADSSRAKRAEVVDKMAAAYILQGFLDRLGFM 157
>gi|255261332|ref|ZP_05340674.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
gi|255103667|gb|EET46341.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
Length = 158
Score = 197 bits (503), Expect = 3e-49, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I + ++ +A +DLGT IG+A+SD A P + RKK + A LL
Sbjct: 1 MIFNDITEFAAAVPQMSALAGLDLGTVTIGVAVSDRFLSVATPLETIRRKKFSLDAARLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ ++GLP NM+GSEGPR STRAF N+ ++ +P FWDERL+TV+A++
Sbjct: 61 EIAKDRELGGLVLGLPYNMDGSEGPRCQSTRAFARNL-EKLTDLPISFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + +RK+R + +D +AA ILQ VLDR + L +S
Sbjct: 120 ALLEADTTRKRRAEVIDHVAAGYILQGVLDRFAHLRAS 157
>gi|150396164|ref|YP_001326631.1| Holliday junction resolvase-like protein [Sinorhizobium medicae
WSM419]
gi|167013052|sp|A6U816|RUVX_SINMW RecName: Full=Putative Holliday junction resolvase
gi|150027679|gb|ABR59796.1| Holliday junction resolvase YqgF [Sinorhizobium medicae WSM419]
Length = 165
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 86/159 (54%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL IE+L + L P Q +A +DLGTK IGL++SD GRRFA PR + R K A LL
Sbjct: 1 MAILTIEELAERLPPYQAVAGLDLGTKTIGLSVSDLGRRFATPRDVIRRVKFGIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F E +AAF+IGLP+NM+GSEGPR +TRAFV M +R +P V WDERL+TV+A++
Sbjct: 61 FFAEKEKVAAFVIGLPVNMDGSEGPRCQATRAFVRTMGER-TDIPSVLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+LI+M+VSRKKR ++DS AA+ ILQ LDR++ L
Sbjct: 120 VLIEMDVSRKKRADRIDSAAASFILQGALDRLALLARGA 158
>gi|254454337|ref|ZP_05067774.1| conserved hypothetical protein TIGR00250 [Octadecabacter
antarcticus 238]
gi|198268743|gb|EDY93013.1| conserved hypothetical protein TIGR00250 [Octadecabacter
antarcticus 238]
Length = 158
Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + D +L P+A +DLGTK IG+A+ D G A P + R K A L
Sbjct: 1 MIFEDVIDFAAALPRYAPLAGLDLGTKTIGVAVCDGGLIIASPLETIKRSKFQADATRLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+A ++GLP NM+GSEGPR STRAF N+ R +P +WDERL+TV+A++
Sbjct: 61 EITAHREVAGIVLGLPRNMDGSEGPRAQSTRAFARNL-SRLSDLPITYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SRK+R + +D+IAA++ILQ +LDR+ ++++
Sbjct: 120 ALLEADTSRKRRAEVIDNIAASIILQGLLDRLRNIKAA 157
>gi|15888641|ref|NP_354322.1| hypothetical protein Atu1316 [Agrobacterium tumefaciens str. C58]
gi|32130043|sp|Q8UFT1|RUVX_AGRT5 RecName: Full=Putative Holliday junction resolvase
gi|15156369|gb|AAK87107.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 159
Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats.
Identities = 87/159 (54%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ L IE+L ++L+P Q IA +DLGTK IGLA+SD RRFA PRP + R K TQ A LL
Sbjct: 1 MATLTIEELAQTLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+F E +AAF+IGLP+NM+GS GPR +TRAFV M K +PF++WDERL+TV+A++
Sbjct: 61 AFAEKEKVAAFVIGLPINMDGSAGPRAQATRAFVRTM-GEKTALPFIYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
L++M+VSR KR +++DS AA+ ILQ LDR+S L +
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSALTRAA 158
>gi|226311491|ref|YP_002771385.1| Holliday junction resolvase [Brevibacillus brevis NBRC 100599]
gi|226094439|dbj|BAH42881.1| putative Holliday junction resolvase [Brevibacillus brevis NBRC
100599]
Length = 138
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D+G K IG+A+SD A + R+ + L ++ I AF++GLP
Sbjct: 3 RLMGLDVGDKTIGVAVSDELGWTAQGVETIKRQSKEKDFARLSELVSQYQIGAFVVGLPK 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR +AF +++ + +P WDERLTT++A+++LI +VSR+KR +D
Sbjct: 63 NMNGTIGPRAEMCQAFG-KLLEERTSLPVHMWDERLTTMAAERMLISADVSRQKRKTVID 121
Query: 138 SIAAALILQEVLDRIS 153
+AA LILQ LD S
Sbjct: 122 KMAATLILQGYLDAKS 137
>gi|254512444|ref|ZP_05124511.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
bacterium KLH11]
gi|221536155|gb|EEE39143.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
bacterium KLH11]
Length = 154
Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats.
Identities = 67/150 (44%), Positives = 92/150 (61%), Gaps = 1/150 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
ED +L P + +DLG K IG+A+SD R A P + RKK T + L+ +T
Sbjct: 6 FEDFAAALPPMSALMGLDLGEKTIGVAVSDRMRGVATPLETVRRKKFTLDSARLIEIVTD 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I ++GLP NM+GSEGPR STRAF N+ R V FWDERL+TV+A++ L++
Sbjct: 66 REIGGIVLGLPRNMDGSEGPRCQSTRAFARNLT-RLTEVQIGFWDERLSTVAAEKALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ +RK+R Q +D +AA ILQ LDR+ FL
Sbjct: 125 DTTRKRRGQVIDHVAAGYILQGALDRLRFL 154
>gi|163746885|ref|ZP_02154242.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45]
gi|161379999|gb|EDQ04411.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45]
Length = 157
Score = 196 bits (500), Expect = 8e-49, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M D + +L P Q + +DLG K IG+A+SD + A P + RKK A L
Sbjct: 1 MIFDDTADFLAALPPMQALIGLDLGEKTIGVAVSDSFQSVATPLETVRRKKFGLDAARLA 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I I ++GLP NM+GSEGPR STRAF N DR +P +WDERL+TV+A++
Sbjct: 61 EIIAKRRIGGLVLGLPRNMDGSEGPRCQSTRAFARNF-DRLTPLPITYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ + +RK+R + +D +AA ILQ +LDR+ +
Sbjct: 120 ALLEADTTRKRRAEVIDHVAAGYILQGLLDRLQVMRR 156
>gi|49475587|ref|YP_033628.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1]
gi|62900975|sp|Q6G3F1|RUVX_BARHE RecName: Full=Putative Holliday junction resolvase
gi|49238394|emb|CAF27621.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1]
Length = 159
Score = 196 bits (500), Expect = 8e-49, Method: Composition-based stats.
Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I +++ L P Q IA +DLGTK IG+A+SD G F++PR L R+K T A L+
Sbjct: 1 MAIININEVMIHLLPGQIIAGLDLGTKTIGIAVSDRGLIFSNPRSVLQRQKFTVDAQTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ IIGLPLNMNGS GPR +TR FV NM + +PFVFWDERL+T++A++
Sbjct: 61 KIFDHENVGVIIIGLPLNMNGSSGPRAQATRTFVRNM-EAYTEIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR ++DS AAA ILQ L+RI L +G
Sbjct: 120 SLLEMDVSRAKRATRIDSAAAAFILQGALNRIHNLHHIEG 159
>gi|84499203|ref|ZP_00997491.1| hypothetical protein OB2597_04730 [Oceanicola batsensis HTCC2597]
gi|84392347|gb|EAQ04558.1| hypothetical protein OB2597_04730 [Oceanicola batsensis HTCC2597]
Length = 161
Score = 195 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 2/160 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +E+ +L P + IA +D G K IG+A+SD A P + R+K Q A L
Sbjct: 1 MIHETVEEFAAALPPMRAIAGLDFGDKTIGVAVSDTFLSVATPLETIRRRKFGQDADALS 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTVSA 118
+ + I ++GLP NM+GSEGPR STRAF N+ R +P FWDERL+TV+A
Sbjct: 61 ALLAARTIGGLVLGLPRNMDGSEGPRCQSTRAFARNLARRPDFADLPLTFWDERLSTVAA 120
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
++ L++ + SR++R + +D +AA ILQ LDR+ L+ +
Sbjct: 121 ERALLEADTSRRRRAEVIDHVAAGYILQGALDRLRHLKGA 160
>gi|240850656|ref|YP_002972056.1| putative Holliday junction resolvase [Bartonella grahamii as4aup]
gi|240267779|gb|ACS51367.1| putative Holliday junction resolvase [Bartonella grahamii as4aup]
Length = 159
Score = 195 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 83/160 (51%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ I +++ L P Q IA +DLGTK IG+AISD G ++PRP L RKK T+ A L+
Sbjct: 1 MIVININEVMTHLLPGQTIAGLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFTEDAYTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ IIGLPLNMNGS G RV +TRAFV NM +PFVFWDERL+T++A++
Sbjct: 61 KIFDRENVGVIIIGLPLNMNGSSGSRVQATRAFVSNM-KAYTKIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++MNVSR KR ++DS AAA ILQ L+RI +G
Sbjct: 120 SLLEMNVSRAKRASRIDSAAAAFILQGALNRIQNFHHMEG 159
>gi|149202250|ref|ZP_01879223.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035]
gi|149144348|gb|EDM32379.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035]
Length = 160
Score = 195 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + I +L + I +DLGTK IG+A+SD A P + R K T A LL
Sbjct: 1 MILEEIAAFAAALPQGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTDDAARLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + I+GLP NM+GSEGPR STRAF N+ R VP +WDERL+TV+A++
Sbjct: 61 QIVAGREVGGIILGLPRNMDGSEGPRAQSTRAFARNL-SRLTEVPIGYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ + +RK+R+Q +D+IAAA ILQ VLDR+ + +
Sbjct: 120 ALLEADATRKRRMQVIDNIAAAYILQGVLDRMGHMRA 156
>gi|253574901|ref|ZP_04852241.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845947|gb|EES73955.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 138
Score = 195 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 56/136 (41%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D G +RIG+A+SD A + R+K + + + ++GLP
Sbjct: 2 KIMGLDYGDRRIGVAVSDSLGWTAQGLETIERRKEGSEFERIAELVKQHEVEEIVVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR AF ++ K+ +P WDERLTTVSAQ+ L+D +VSRKKR VD
Sbjct: 62 NMNGTIGPRGEICMAFAEDL-RAKLNLPVHLWDERLTTVSAQRTLLDADVSRKKRKGVVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA+LILQ LD S
Sbjct: 121 KMAASLILQNYLDSKS 136
>gi|77463236|ref|YP_352740.1| putative endonuclease involved in recombination [Rhodobacter
sphaeroides 2.4.1]
gi|126462110|ref|YP_001043224.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
ATCC 17029]
gi|332558114|ref|ZP_08412436.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
WS8N]
gi|146325603|sp|Q3J2Z5|RUVX_RHOS4 RecName: Full=Putative Holliday junction resolvase
gi|167012752|sp|A3PJD6|RUVX_RHOS1 RecName: Full=Putative Holliday junction resolvase
gi|77387654|gb|ABA78839.1| putative endonuclease involved in recombination [Rhodobacter
sphaeroides 2.4.1]
gi|126103774|gb|ABN76452.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC
17029]
gi|332275826|gb|EGJ21141.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
WS8N]
Length = 160
Score = 195 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
IED + SL +A +DLGTK +G+A+SD RR A P + R K T+ A +L +
Sbjct: 6 IEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTEDAAKLKAIAAE 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ ++GLP NM+GSEGPR STRAF N++ + + +P FWDERL+TV+A++ L++
Sbjct: 66 RRLVGIVLGLPRNMDGSEGPRAQSTRAFARNLV-QVLPLPVGFWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ SRK+R + +D +AA ILQ VLDR+ +L G
Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWLGREGG 159
>gi|163868299|ref|YP_001609508.1| putative resolvase [Bartonella tribocorum CIP 105476]
gi|189046086|sp|A9IU51|RUVX_BART1 RecName: Full=Putative Holliday junction resolvase
gi|161017955|emb|CAK01513.1| putative resolvase [Bartonella tribocorum CIP 105476]
Length = 156
Score = 195 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 83/157 (52%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ I +++ L P Q IA +DLGTK IG+AISD G ++PRP L RKK T+ A L+
Sbjct: 1 MTVININEIMTHLLPGQTIAGLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFTEDAHRLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ +IGLPLNMNGS G RV +TRAFV NM +PFVFWDERL+T++A++
Sbjct: 61 KIFDHENVGVIVIGLPLNMNGSSGSRVQATRAFVSNM-KAYTKIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++MNVSR KR +++DS AAA ILQ L+RI L S
Sbjct: 120 SLLEMNVSRIKRARRIDSAAAAFILQGALNRIENLHS 156
>gi|83943004|ref|ZP_00955464.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36]
gi|83846012|gb|EAP83889.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36]
Length = 161
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I D +L P Q + +DLG K IG+A+SD A P + RKK A L
Sbjct: 1 MIYDDITDFAAALPPMQALIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVDAARLS 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I I ++GLP NM+GSEG R STRAF N DR +P FWDERL+TV+A++
Sbjct: 61 EIIAARGIGGVVLGLPRNMDGSEGARCQSTRAFARNF-DRLGDIPIGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SR++R + +D +AA ILQ VLDR+ +++
Sbjct: 120 ALLEADTSRRRRAEVIDHVAAGYILQGVLDRLRVIKAQ 157
>gi|221639098|ref|YP_002525360.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
KD131]
gi|254767523|sp|B9KRR7|RUVX_RHOSK RecName: Full=Putative Holliday junction resolvase
gi|221159879|gb|ACM00859.1| Holliday junction resolvase [Rhodobacter sphaeroides KD131]
Length = 160
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
IED + SL +A +DLGTK +G+A+SD RR A P + R K T+ A +L +
Sbjct: 6 IEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTEDAAKLKAIADE 65
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+ ++GLP NM+GSEGPR STRAF N++ + + +P FWDERL+TV+A++ L++
Sbjct: 66 RRLVGIVLGLPRNMDGSEGPRAQSTRAFARNLV-QVLPLPVGFWDERLSTVAAERALLEA 124
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ SRK+R + +D +AA ILQ VLDR+ +L G
Sbjct: 125 DTSRKRRAEVIDHVAAGYILQGVLDRLDWLGREGG 159
>gi|83954179|ref|ZP_00962899.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1]
gi|83841216|gb|EAP80386.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1]
Length = 161
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I D +L P Q + +DLG K IG+A+SD A P + RKK A L
Sbjct: 1 MIYDDITDFAAALPPMQALIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVDATRLS 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I I ++GLP NM+GSEG R STRAF N DR +P FWDERL+TV+A++
Sbjct: 61 EIIAARGIGGVVLGLPRNMDGSEGARCQSTRAFARNF-DRLGDIPIGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SR++R + +D +AA ILQ VLDR+ +++
Sbjct: 120 ALLEADTSRRRRAEVIDHVAAGYILQGVLDRLRVIKAQ 157
>gi|209964820|ref|YP_002297735.1| hypothetical protein RC1_1518 [Rhodospirillum centenum SW]
gi|226731644|sp|B6IN25|RUVX_RHOCS RecName: Full=Putative Holliday junction resolvase
gi|209958286|gb|ACI98922.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 188
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I + +L SL N + +DLG K IGLA+SDPG A P + R K TQ A EL
Sbjct: 1 MAIRNLMELKASLPRNGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQDAQELA 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTV 116
+ ++ A ++GLP+NM+G+EGPR S R F ++ R FWDERL+T
Sbjct: 61 RAMRDRDVRALVVGLPVNMDGTEGPRCQSVREFSRLLLQRPQLFGFEPEIAFWDERLSTS 120
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ ++++I +++RK+R + VD +AAA ILQ LDR+ +++ G
Sbjct: 121 AVERMMIGWDMTRKRRDEVVDKMAAAYILQGALDRLRQGDAAPG 164
>gi|49474241|ref|YP_032283.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse]
gi|62900974|sp|Q6FZS7|RUVX_BARQU RecName: Full=Putative Holliday junction resolvase
gi|49239745|emb|CAF26127.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse]
Length = 159
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 80/160 (50%), Positives = 110/160 (68%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ I +++ L P Q IA +DLG K IG+A+SD G F++PR L RKK+T A L+
Sbjct: 1 MAVININEVITHLLPGQTIAGLDLGKKTIGIAVSDRGLTFSNPRSVLQRKKLTVDARTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ IIGLPLNMNGS GPR +TR FV+NM + +PFVFWDERL+T++A++
Sbjct: 61 QIFDRENVGVVIIGLPLNMNGSSGPRAQATRTFVNNM-EAYTEIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR ++DS AAA ILQ L+RI L +G
Sbjct: 120 SLLEMDVSRAKRATRIDSAAAAFILQGALNRIQNLHYMEG 159
>gi|89068321|ref|ZP_01155731.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516]
gi|89046238|gb|EAR52296.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516]
Length = 157
Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ED +L + + +DLGT+ IG+A+SD R A P + RKK A LL
Sbjct: 1 MICDSAEDFAAALPDHGALVGLDLGTRTIGVAVSDGLRAVATPLQTIARKKFGVDAAALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I ++GLP NM+GSEGPR STR F N+ +R +P FWDERL+TV+A++
Sbjct: 61 AICEHRAITGIVLGLPRNMDGSEGPRCQSTRGFARNL-ERLTPLPIAFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
L++ + SR++R + +D +AA +ILQ +LDR+ L
Sbjct: 120 ALLEADTSRRRRGEVIDHVAAGVILQGMLDRLRHLR 155
>gi|27380205|ref|NP_771734.1| Holliday junction resolvase-like protein [Bradyrhizobium japonicum
USDA 110]
gi|27353359|dbj|BAC50359.1| blr5094 [Bradyrhizobium japonicum USDA 110]
Length = 167
Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
IL + D + +DLGTK IG+A+S+P RR A + RK Q A LL+
Sbjct: 11 ILPLVDAATHWPERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAI 70
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ F++GLP+NM+GSEGPR STRAF N+ + +P WDERL+T + ++ L
Sbjct: 71 AAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTTLPIGLWDERLSTAAVEREL 129
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
I M+VSR KR + +D AA ILQ LDR++ L + G
Sbjct: 130 IGMDVSRAKRAEVIDEHAAIFILQGALDRLANLRTGNG 167
>gi|32130021|sp|Q89K24|RUVX_BRAJA RecName: Full=Putative Holliday junction resolvase
Length = 161
Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
IL + D + +DLGTK IG+A+S+P RR A + RK Q A LL+
Sbjct: 5 ILPLVDAATHWPERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAI 64
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ F++GLP+NM+GSEGPR STRAF N+ + +P WDERL+T + ++ L
Sbjct: 65 AAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTTLPIGLWDERLSTAAVEREL 123
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
I M+VSR KR + +D AA ILQ LDR++ L + G
Sbjct: 124 IGMDVSRAKRAEVIDEHAAIFILQGALDRLANLRTGNG 161
>gi|126736029|ref|ZP_01751773.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2]
gi|126714586|gb|EBA11453.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2]
Length = 158
Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M E V ++ +A +DLGT IG+A+SD R A P + RKK A +LL
Sbjct: 1 MICDTPETFVAAIPDRGALAGLDLGTVTIGVAVSDVLRSVATPLETIKRKKFGVDAAKLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
T + ++GLP NM+GSEGPR +TRAF N+ ++ +P FWDERL+TV+A++
Sbjct: 61 ELTTHRLVTGLVLGLPRNMDGSEGPRCQATRAFARNL-EKLTPLPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SRK+R + +D +AA ILQ +LDR++ L+++
Sbjct: 120 ALLEADTSRKRRAEVIDHVAAGYILQGMLDRMAHLKAT 157
>gi|85707211|ref|ZP_01038297.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217]
gi|85668265|gb|EAQ23140.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217]
Length = 160
Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +L + I +DLGTK IG+A+SD A P + R K T+ A L
Sbjct: 1 MIFEEIAGFAGALPRGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTEDAARLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+T ++ I+GLP NM+GSEGPR STRAF N+ R P +WDERL+TV+A++
Sbjct: 61 DIMTGRDVGGIILGLPRNMDGSEGPRAQSTRAFARNL-SRLTDAPIGYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ + +RK+R+Q +D+IAAA ILQ VLDR+S + +
Sbjct: 120 ALLEADATRKRRMQVIDNIAAAYILQGVLDRMSHMRA 156
>gi|303229331|ref|ZP_07316121.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-134-V-Col7a]
gi|302515867|gb|EFL57819.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-134-V-Col7a]
Length = 140
Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats.
Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D+G++ IG+A SD A + R + L I+ + ++G+P
Sbjct: 2 RIMALDVGSRTIGIACSDALLMTAQGIETIRRTSLENDFNRLRELISEYEVHELVVGMPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG++G R T FV M + +P FWDERL+TV A++ LI +VSRKKR +D
Sbjct: 62 NMNGTKGERAEKTEEFVEKM-KAVIDLPVTFWDERLSTVMAERQLIAADVSRKKRKGVID 120
Query: 138 SIAAALILQEVLDRISFLES 157
+AA +ILQ LDR+ F +S
Sbjct: 121 KMAAVVILQGYLDRLQFSKS 140
>gi|163734012|ref|ZP_02141453.1| hypothetical protein RLO149_03699 [Roseobacter litoralis Och 149]
gi|161392548|gb|EDQ16876.1| hypothetical protein RLO149_03699 [Roseobacter litoralis Och 149]
Length = 163
Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + D + +L P + + +DLGT+ IG+A+SD A P + R+K T A L+
Sbjct: 1 MILEDTADFLAALAPMRSLMGLDLGTQTIGVAVSDTFLSVATPLETIKRRKFTLDAARLV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQ 119
+ + ++GLP NM+GSEGPR STRAF N+ +P FWDERL+TV+A+
Sbjct: 61 EIASERRLGGLVLGLPRNMDGSEGPRCQSTRAFARNLEKTIGSDLPITFWDERLSTVAAE 120
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+ L++ + SRK+R + +D +AA ILQ LDRI + + +
Sbjct: 121 RALLEADTSRKRRAEVIDHVAAGYILQGALDRIRVIRAEQ 160
>gi|158320692|ref|YP_001513199.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
gi|158140891|gb|ABW19203.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
Length = 139
Score = 192 bits (490), Expect = 9e-48, Method: Composition-based stats.
Identities = 53/134 (39%), Positives = 73/134 (54%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G K IG+AISD A + R + + L I +I ++GLP NM
Sbjct: 5 MGLDVGDKTIGVAISDLFGWTAQGLETIQRIGIKKDLQRLEVIIKEHDINKIVVGLPKNM 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+ GP+ F + R V V WDERLTTV+A++ LI+ +VSRKKR + +D +
Sbjct: 65 NGTIGPQGEKVLEFNERLKGRFKDVEIVLWDERLTTVAAERSLIEADVSRKKRKEVIDKM 124
Query: 140 AAALILQEVLDRIS 153
AA ILQ LD S
Sbjct: 125 AAVYILQGYLDSAS 138
>gi|260459185|ref|ZP_05807440.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum
WSM2075]
gi|259034739|gb|EEW35995.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum
WSM2075]
Length = 168
Score = 192 bits (490), Expect = 9e-48, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ IE L L + +A +DLG K IG+A+SD G FAHPRP ++R+K + A LL
Sbjct: 1 MAVITIEQLPARLADGRTLAGLDLGDKTIGVAVSDRGFSFAHPRPVIIRRKFSLDAAVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + EN A +IGLP+NM+GSEGPR +RAFV NM + +PFVFWDERL+TV+A++
Sbjct: 61 ALLKKENAGAVVIGLPINMDGSEGPRAQKSRAFVRNMA-QLSDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI+M+ SR KR K+DS AAA ILQ VLDR+ L +S
Sbjct: 120 TLIEMDFSRAKRAGKIDSAAAAFILQGVLDRLQSLAAS 157
>gi|83590476|ref|YP_430485.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
39073]
gi|146325578|sp|Q2RHZ7|RUVX_MOOTA RecName: Full=Putative Holliday junction resolvase
gi|83573390|gb|ABC19942.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
39073]
Length = 140
Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats.
Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+GTK IG+A+SDP A + R+ + L + + ++GLP
Sbjct: 2 RIMGLDVGTKTIGVALSDPLGWTAQGLTTIRRRNLAADLAALKELVRRYGVEELVVGLPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNGS GP+ + RAF ++ +V +P F+DERLTTV+A ++L++ ++SR++R Q +D
Sbjct: 62 NMNGSLGPQAEAVRAFARHL-QAEVGLPVHFFDERLTTVAAGRVLLEADLSRRRRRQVID 120
Query: 138 SIAAALILQEVLDRI 152
+AA ILQ LDR+
Sbjct: 121 QVAATYILQGYLDRL 135
>gi|110679064|ref|YP_682071.1| hypothetical protein RD1_1766 [Roseobacter denitrificans OCh 114]
gi|118597221|sp|Q169F8|RUVX_ROSDO RecName: Full=Putative Holliday junction resolvase
gi|109455180|gb|ABG31385.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 163
Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + D + +L + + +DLGT+ IG+A+SD A P + R+K T A L
Sbjct: 1 MILEDTADFLAALPSMRSLMGLDLGTQTIGVAVSDTFLSVATPLETVKRRKFTLDAARLS 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQ 119
+ + ++GLP NM+GSEGPR STRAF N+ +P FWDERL+TV+A+
Sbjct: 61 DIVAQRRLGGLVLGLPRNMDGSEGPRCQSTRAFARNLDKSIGSDLPITFWDERLSTVAAE 120
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+ L++ + SRK+R + +D +AAA ILQ LDRI + + +
Sbjct: 121 RALLEADTSRKRRAEVIDHVAAAYILQGALDRIRVIRAEQ 160
>gi|146341407|ref|YP_001206455.1| Holliday junction resolvase-like protein [Bradyrhizobium sp.
ORS278]
gi|167012698|sp|A4YWF9|RUVX_BRASO RecName: Full=Putative Holliday junction resolvase
gi|146194213|emb|CAL78235.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS278]
Length = 161
Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
IL + + + +DLGTK IG+A+SDP RR A + RK A LL+
Sbjct: 4 PILPLIEAAGRWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLA 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ F++GLP+NM+GSEGPR STRAF N+ +P WDERL+T + ++
Sbjct: 64 ICAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAG-LTDLPIGLWDERLSTAAVERE 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR + +D+ AA ILQ LDR++ L S
Sbjct: 123 LIGMDVSRAKRAEVIDTHAAIFILQGALDRLTTLRRS 159
>gi|115525369|ref|YP_782280.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
BisA53]
gi|122295574|sp|Q07L84|RUVX_RHOP5 RecName: Full=Putative Holliday junction resolvase
gi|115519316|gb|ABJ07300.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
BisA53]
Length = 163
Score = 192 bits (490), Expect = 1e-47, Method: Composition-based stats.
Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 1/159 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
IL + + P + +DLGTK IG+A+SDP RR A ++RK T A LL+
Sbjct: 4 PILPLIEAAAQWPPTGALIGLDLGTKTIGVAVSDPARRLATGVETILRKTFTTDAARLLA 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
T ++GLP+NM+ SEGPR STRAF N+ R +P WDERL+T + ++
Sbjct: 64 LATERKAVGLVLGLPINMDASEGPRAQSTRAFARNLA-RLTELPIGLWDERLSTAAVERE 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
LI +VSR KR + +D AA ILQ LDR++ L S G
Sbjct: 123 LIANDVSRAKRAKVIDEHAAIFILQGALDRLAVLNRSTG 161
>gi|255527853|ref|ZP_05394701.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7]
gi|296185454|ref|ZP_06853864.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7]
gi|255508464|gb|EET84856.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7]
gi|296050288|gb|EFG89712.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7]
Length = 138
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G + IG+A+SDP A + RK EL + N+ + GLP
Sbjct: 2 RILGLDVGDRTIGVAVSDPLGFTAQGITTIRRKSQDADIKELKNICDEYNVETIVSGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ F +I K+ +P WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTLGPQSEKVLKFCE-VIKEKIGLPIKMWDERLTTVAAHRAMLEADLSRNKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA ILQ LD IS
Sbjct: 121 KMAAIYILQGYLDSIS 136
>gi|167462225|ref|ZP_02327314.1| hypothetical protein Plarl_06660 [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322382969|ref|ZP_08056801.1| Holliday junction resolvase-like protein [Paenibacillus larvae
subsp. larvae B-3650]
gi|321153089|gb|EFX45547.1| Holliday junction resolvase-like protein [Paenibacillus larvae
subsp. larvae B-3650]
Length = 136
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 53/132 (40%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G + IG+A+SD A + RKK + + I ++ ++GLP NM
Sbjct: 4 MGLDYGDRTIGVAVSDLLGLTAQGVEVIRRKKQEEDLARIGELIREYEVSELVVGLPKNM 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+ GPR + F ++ R+ +P WDERLTTVSA + L++ +VSRKKR Q VD +
Sbjct: 64 NGTIGPRGELCQEFAG-LLKRQFGLPVHLWDERLTTVSATRTLLEADVSRKKRKQVVDKM 122
Query: 140 AAALILQEVLDR 151
AAALILQ +D
Sbjct: 123 AAALILQGYMDS 134
>gi|303230717|ref|ZP_07317464.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-049-V-Sch6]
gi|302514477|gb|EFL56472.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-049-V-Sch6]
Length = 140
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D+G++ IG+A SD A + R + L I+ + ++G+P
Sbjct: 2 RIMALDVGSRTIGIACSDALLMTAQGIETIRRTSLENDFNRLRELISEYEVHELVVGMPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG++G R T FV M + +P FWDERL+TV A++ LI +VSRKKR +D
Sbjct: 62 NMNGTKGDRAEKTEEFVEKM-KAVIDLPVTFWDERLSTVMAERQLIAADVSRKKRKGVID 120
Query: 138 SIAAALILQEVLDRISFLES 157
+AA +ILQ LDR+ F +S
Sbjct: 121 KMAAVVILQGYLDRLQFSKS 140
>gi|319407285|emb|CBI80926.1| putative resolvase [Bartonella sp. 1-1C]
Length = 163
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MTIISINEVKTHLSLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ A IIGLPLNMNGS GPRV +T+ FV NM +PFVFWDERL+T++A++
Sbjct: 61 QIFNNENVGAIIIGLPLNMNGSNGPRVQATKTFVSNMAT-YTEIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+L++M++SR KR ++DS AAA ILQ LDRI L+S+
Sbjct: 120 LLLEMDMSRSKRKSRIDSAAAAFILQGALDRIKTLQSN 157
>gi|169343788|ref|ZP_02864787.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C
str. JGS1495]
gi|169298348|gb|EDS80438.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C
str. JGS1495]
Length = 137
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G+K IG+A+SDP A + R T+ ++ + ++G+P
Sbjct: 2 RILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVVGMPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP + I++ FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTIGPSGEMVKNLCEQ-IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
IAA ILQ LDRIS
Sbjct: 121 KIAATYILQGYLDRIS 136
>gi|114707193|ref|ZP_01440091.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506]
gi|114537389|gb|EAU40515.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506]
Length = 165
Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats.
Identities = 77/160 (48%), Positives = 113/160 (70%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MS++ IE+ ++LK +P+A +DLGTK IG+A+SD RFA+PR L RKK TQ A L
Sbjct: 1 MSVVEIEEFAETLKLGKPLAGLDLGTKTIGVAVSDRSFRFANPRSVLKRKKFTQDAQALK 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + ++A ++GLPLNM+GS GPR +T+AF N P + WDERL+TV+A++
Sbjct: 61 AMLDADEVSAIVLGLPLNMDGSSGPRAQATKAFSRNYA-ALDERPILLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L+D+++SRKKR +++DS AAA+ILQ VLDR++ L G
Sbjct: 120 NLLDIDMSRKKRGERIDSAAAAIILQGVLDRLANLTRCPG 159
>gi|126725473|ref|ZP_01741315.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium
HTCC2150]
gi|126704677|gb|EBA03768.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium
HTCC2150]
Length = 156
Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 1 MSIL-LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
M+I+ + SLK PI ++D G K IG+A SD R A P + R K T A L
Sbjct: 1 MAIIEDFVEFGSSLKEMSPIFALDFGDKTIGIATSDIFRNIATPLETIRRTKFTADAERL 60
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
L + F++GLP NM+GSEG R TRAF N+ +R + FWDERL+TV+A+
Sbjct: 61 LELAKQRQVTGFVLGLPRNMDGSEGVRCQKTRAFARNL-ERLTEINIAFWDERLSTVAAE 119
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ LI+ + SR KR Q +D +AA ILQ LDR++ L
Sbjct: 120 RALIEADTSRAKRAQIIDHVAAGYILQGALDRLAHL 155
>gi|319404280|emb|CBI77873.1| putative resolvase [Bartonella rochalimae ATCC BAA-1498]
Length = 163
Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I +++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MAIISINEVMTHLSLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ A IIGLPLNMNGS GPRV +T+ FV NM +PFVFWDERL+T++A++
Sbjct: 61 QIFNNENVGAIIIGLPLNMNGSNGPRVQATKTFVSNMAT-YTEIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+L++M++SR KR ++DS AAA ILQ LDRI L S+
Sbjct: 120 LLLEMDMSRSKRKSRIDSAAAAFILQGALDRIKTLPSN 157
>gi|319783699|ref|YP_004143175.1| Holliday junction resolvase YqgF [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169587|gb|ADV13125.1| Holliday junction resolvase YqgF [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 168
Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats.
Identities = 81/159 (50%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I+ IE+L L + +A +DLG K IG+A+SD FAHPRP ++R+K + A LL
Sbjct: 1 MGIITIEELPARLAGGKTLAGLDLGDKTIGVAVSDQRFSFAHPRPVIMRRKFSLDAAVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + EN A +IGLP+NM+GSEGPR +RAFV NM + +PFV WDERL+TV+A++
Sbjct: 61 ALLQKENAGAVVIGLPINMDGSEGPRAQKSRAFVRNMA-QMSDLPFVLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
LI+M+ SR+KR K+DS AAA ILQ VLDR+ L +S
Sbjct: 120 TLIEMDFSRRKRAGKIDSAAAAFILQGVLDRLQSLHASA 158
>gi|238018987|ref|ZP_04599413.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748]
gi|313892893|ref|ZP_07826470.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158
str. F0412]
gi|237864471|gb|EEP65761.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748]
gi|313442246|gb|EFR60661.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158
str. F0412]
Length = 139
Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 1/137 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I S+D+G++ IG+A SD A + R + + L I + ++G+P
Sbjct: 2 RIMSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELIAEYEVHELVVGMPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG++G R T FV M + +P +WDERL+TV A++ LI +VSRKKR +D
Sbjct: 62 NMNGTKGERAEKTEEFVEKM-KEVIDLPVSYWDERLSTVMAERQLIAADVSRKKRKSVID 120
Query: 138 SIAAALILQEVLDRISF 154
+AA +ILQ LDR+ F
Sbjct: 121 KMAAVVILQGYLDRLQF 137
>gi|209884927|ref|YP_002288784.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5]
gi|209873123|gb|ACI92919.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5]
Length = 204
Score = 190 bits (485), Expect = 4e-47, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 88/158 (55%), Gaps = 1/158 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
IL + D P + +DLGTK IG+A+SDP RR A + RK T+ A ELL
Sbjct: 46 PILPLIDAAALWAPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKNFTKDAAELLK 105
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
A F++GLP+NM+GSEGPR STRAF N + WDERL+T + ++
Sbjct: 106 ISGERACAGFVLGLPINMDGSEGPRAQSTRAFARNFAK-LTELAIGLWDERLSTAAVERE 164
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
L+ +VSR +R + +D AA ILQ LDR++ L
Sbjct: 165 LLANDVSRARRAEVIDEHAAIFILQGALDRLTALRRQA 202
>gi|254720416|ref|ZP_05182227.1| Holliday junction resolvase-like protein [Brucella sp. 83/13]
gi|265985435|ref|ZP_06098170.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306839007|ref|ZP_07471828.1| conserved hypothetical protein [Brucella sp. NF 2653]
gi|264664027|gb|EEZ34288.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306405913|gb|EFM62171.1| conserved hypothetical protein [Brucella sp. NF 2653]
Length = 162
Score = 190 bits (485), Expect = 4e-47, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR +++DS AAA ILQ LDR+ + +
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHMMRRN 157
>gi|258645601|ref|ZP_05733070.1| putative Holliday junction resolvase [Dialister invisus DSM 15470]
gi|260402959|gb|EEW96506.1| putative Holliday junction resolvase [Dialister invisus DSM 15470]
Length = 142
Score = 190 bits (485), Expect = 4e-47, Method: Composition-based stats.
Identities = 53/137 (38%), Positives = 79/137 (57%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I S+D+G++ IG+A+SD A + + + L N+ F+IG+PL
Sbjct: 2 RIMSLDVGSQTIGVAVSDLFGWTAQGVETIRHTTREKDFVRLRHLADEYNVEEFVIGMPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG++G R T F + +P+ FWDERLTTV AQ+ LI+ +VSRKKR + +D
Sbjct: 62 NMNGTKGMRAEQTEKFAEALAAAFPDIPYHFWDERLTTVMAQRQLIEADVSRKKRKKVID 121
Query: 138 SIAAALILQEVLDRISF 154
+AA +IL+ L +SF
Sbjct: 122 KMAAVVILEGYLQHLSF 138
>gi|306841755|ref|ZP_07474441.1| conserved hypothetical protein [Brucella sp. BO2]
gi|306288160|gb|EFM59547.1| conserved hypothetical protein [Brucella sp. BO2]
Length = 162
Score = 190 bits (485), Expect = 4e-47, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR +++DS AAA ILQ LDR+ + +
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHMMRRN 157
>gi|23500341|ref|NP_699781.1| Holliday junction resolvase-like protein [Brucella suis 1330]
gi|161620659|ref|YP_001594545.1| hypothetical protein BCAN_B0598 [Brucella canis ATCC 23365]
gi|163844749|ref|YP_001622404.1| hypothetical protein BSUIS_B0594 [Brucella suis ATCC 23445]
gi|225629090|ref|ZP_03787123.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|225686383|ref|YP_002734355.1| Holliday junction resolvase-like protein [Brucella melitensis ATCC
23457]
gi|254699833|ref|ZP_05161661.1| Holliday junction resolvase-like protein [Brucella suis bv. 5 str.
513]
gi|254702971|ref|ZP_05164799.1| Holliday junction resolvase-like protein [Brucella suis bv. 3 str.
686]
gi|254705907|ref|ZP_05167735.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
M163/99/10]
gi|254711134|ref|ZP_05172945.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
B2/94]
gi|256015374|ref|YP_003105383.1| putative Holliday junction resolvase [Brucella microti CCM 4915]
gi|256029515|ref|ZP_05443129.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
M292/94/1]
gi|256059210|ref|ZP_05449416.1| Holliday junction resolvase-like protein [Brucella neotomae 5K33]
gi|256111486|ref|ZP_05452500.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 3
str. Ether]
gi|256157710|ref|ZP_05455628.1| Holliday junction resolvase-like protein [Brucella ceti M490/95/1]
gi|256253318|ref|ZP_05458854.1| Holliday junction resolvase-like protein [Brucella ceti B1/94]
gi|256262476|ref|ZP_05465008.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9]
gi|260167394|ref|ZP_05754205.1| Holliday junction resolvase-like protein [Brucella sp. F5/99]
gi|260568115|ref|ZP_05838584.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4
str. 40]
gi|261220434|ref|ZP_05934715.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261313336|ref|ZP_05952533.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261318725|ref|ZP_05957922.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261323159|ref|ZP_05962356.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261750307|ref|ZP_05994016.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513]
gi|261753580|ref|ZP_05997289.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261756804|ref|ZP_06000513.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99]
gi|265986523|ref|ZP_06099080.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265992983|ref|ZP_06105540.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|265996215|ref|ZP_06108772.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|306845931|ref|ZP_07478498.1| conserved hypothetical protein [Brucella sp. BO1]
gi|32130035|sp|Q8FW65|RUVX_BRUSU RecName: Full=Putative Holliday junction resolvase
gi|189046087|sp|A9MBN7|RUVX_BRUC2 RecName: Full=Putative Holliday junction resolvase
gi|189046088|sp|A9WYR6|RUVX_BRUSI RecName: Full=Putative Holliday junction resolvase
gi|254767499|sp|C0RLB8|RUVX_BRUMB RecName: Full=Putative Holliday junction resolvase
gi|23463956|gb|AAN33786.1| conserved hypothetical protein TIGR00250 [Brucella suis 1330]
gi|161337470|gb|ABX63774.1| conserved hypothetical protein [Brucella canis ATCC 23365]
gi|163675472|gb|ABY39582.1| conserved hypothetical protein [Brucella suis ATCC 23445]
gi|225615586|gb|EEH12635.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|225642488|gb|ACO02401.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
gi|255998034|gb|ACU49721.1| putative Holliday junction resolvase [Brucella microti CCM 4915]
gi|260154780|gb|EEW89861.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4
str. 40]
gi|260919018|gb|EEX85671.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261297948|gb|EEY01445.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261299139|gb|EEY02636.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261302362|gb|EEY05859.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261736788|gb|EEY24784.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99]
gi|261740060|gb|EEY27986.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513]
gi|261743333|gb|EEY31259.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|262550512|gb|EEZ06673.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|262763853|gb|EEZ09885.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263092212|gb|EEZ16509.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9]
gi|264658720|gb|EEZ28981.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|306273566|gb|EFM55411.1| conserved hypothetical protein [Brucella sp. BO1]
gi|326410755|gb|ADZ67819.1| Holliday junction resolvase-like protein [Brucella melitensis M28]
gi|326554047|gb|ADZ88686.1| Holliday junction resolvase-like protein [Brucella melitensis
M5-90]
Length = 162
Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR ++DS AAA ILQ LDR+ + +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157
>gi|239833964|ref|ZP_04682292.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
gi|239822027|gb|EEQ93596.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
Length = 165
Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ IE++ L+P + IA +DLGTK IGLA+SD G FAHPRP + R K + A LL
Sbjct: 1 MAVVEIEEIPALLQPGKTIAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFSIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALDADKVGVIVIGLPMNMDGTSGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR +++DS AAA ILQ LDR+ + S
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHSIRRS 157
>gi|154253281|ref|YP_001414105.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans
DS-1]
gi|154157231|gb|ABS64448.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans
DS-1]
Length = 182
Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats.
Identities = 63/151 (41%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
+ +L L N+ + +DLG+K IGLA+SD A P + R K T A L++
Sbjct: 33 PLAELKVGLGRNRRLIGVDLGSKTIGLALSDVSLSIASPLETIRRTKFTADAERLIALAK 92
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
+ A + GLPLNM+G+EGPR STRAF+ N+ ++ +P FWDERL+T++ + L+D
Sbjct: 93 EHDAGALVFGLPLNMDGTEGPRCQSTRAFIRNL-EKLTDLPIAFWDERLSTMAVTRTLLD 151
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ SR +R + VD +AAA ILQ LDR+ L
Sbjct: 152 ADASRARRAELVDKMAAAYILQGALDRLRKL 182
>gi|297584728|ref|YP_003700508.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10]
gi|297143185|gb|ADH99942.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10]
Length = 138
Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats.
Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGL 75
I +D+GTK IG+A+SDP A RKK + ++ + E ++GL
Sbjct: 2 KIIGLDVGTKTIGIAVSDPFGWTAQGVETHRRKKGKENEDVQRIVDLVEEEGAEQIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP +AF ++ +P + WDERLTT +A++ LI +VSRKKR
Sbjct: 62 PKNMNGTIGPSGELCQAFAESL-KEATGLPVILWDERLTTAAAEKTLISADVSRKKRKNV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ LD S
Sbjct: 121 IDKMAAVFILQGYLDSRS 138
>gi|148256069|ref|YP_001240654.1| Holliday junction resolvase-like protein [Bradyrhizobium sp. BTAi1]
gi|167012697|sp|A5EKQ4|RUVX_BRASB RecName: Full=Putative Holliday junction resolvase
gi|146408242|gb|ABQ36748.1| putative Holliday junction resolvase [Bradyrhizobium sp. BTAi1]
Length = 161
Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
IL + + + +DLGTK IG+A+SDP RR A + RK A LL+
Sbjct: 4 PILPLIEAASRWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLA 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ + F++GLP+NM+GSEGPR STRAF N+ + +P WDERL+T + ++
Sbjct: 64 ISSERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAN-LTDLPIGLWDERLSTAAVERE 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR +R + +D+ AA ILQ LDR++ L S
Sbjct: 123 LIGMDVSRARRAEVIDTHAAIFILQGALDRLATLRRS 159
>gi|269798239|ref|YP_003312139.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008]
gi|282850477|ref|ZP_06259856.1| RNAse YqgF [Veillonella parvula ATCC 17745]
gi|269094868|gb|ACZ24859.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008]
gi|282579970|gb|EFB85374.1| RNAse YqgF [Veillonella parvula ATCC 17745]
Length = 139
Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I S+D+G++ IG+A SD A + R + + L I+ + ++G+P
Sbjct: 2 RIMSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELISEYEVHELVVGMPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG++G R T FV M + +P +WDERL+TV A++ LI +VSRKKR +D
Sbjct: 62 NMNGTKGERAEKTEEFVAKM-KEVIDLPVTYWDERLSTVMAERQLIAADVSRKKRKSVID 120
Query: 138 SIAAALILQEVLDRISF 154
+AA +ILQ LDR+ F
Sbjct: 121 KMAAVVILQGYLDRLQF 137
>gi|118597211|sp|Q28QB4|RUVX_JANSC RecName: Full=Putative Holliday junction resolvase
Length = 160
Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 2/159 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +++ ++ P + + +DLGTK IG+A+SD A + RKK A L
Sbjct: 1 MIFETLDEFAGAVPPMRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALA 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTVSA 118
I + I+GLP NM+GSEGPR +TRAF N+ R ++ FWDERL+TV+A
Sbjct: 61 GLIAKHEVGGIILGLPRNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAA 120
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
++ LI + SRK+R + +D++AA+ ILQ LDR+ L +
Sbjct: 121 ERALIAADTSRKRRSEVIDAVAASYILQGALDRLRHLRA 159
>gi|325509094|gb|ADZ20730.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum EA 2018]
Length = 135
Score = 189 bits (482), Expect = 8e-47, Method: Composition-based stats.
Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ID+G K IG+A+SDP A + RK + EL + + GLP
Sbjct: 2 RILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ G + F +I + + VP WDERLTTV+A + +++ ++SRKKR + VD
Sbjct: 62 NMNGTIGFQSEKVLGFCE-VIKQNIDVPIKMWDERLTTVAANRAMLEADLSRKKRKKLVD 120
Query: 138 SIAAALILQEVLDRI 152
+AA ILQ LD I
Sbjct: 121 KVAATYILQGYLDSI 135
>gi|153953951|ref|YP_001394716.1| Holliday junction resolvase-like protein [Clostridium kluyveri DSM
555]
gi|219854565|ref|YP_002471687.1| hypothetical protein CKR_1222 [Clostridium kluyveri NBRC 12016]
gi|189046093|sp|A5N7T7|RUVX_CLOK5 RecName: Full=Putative Holliday junction resolvase
gi|254767509|sp|B9E198|RUVX_CLOK1 RecName: Full=Putative Holliday junction resolvase
gi|146346832|gb|EDK33368.1| Predicted Holliday junction resolvase [Clostridium kluyveri DSM
555]
gi|219568289|dbj|BAH06273.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 137
Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G K IG+A+SDP A + RK + EL + + + GLP
Sbjct: 2 RILGLDIGNKTIGVALSDPLGITAQGITTIKRKGEDRDIEELKAICDKYKVEVIVCGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ F N+I+ + +P WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTLGPQSEKVLKFC-NIIEEVINLPIKMWDERLTTVAANKAMLEADLSRAKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA ILQ LDRIS
Sbjct: 121 KMAATYILQGYLDRIS 136
>gi|312115158|ref|YP_004012754.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC
17100]
gi|311220287|gb|ADP71655.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC
17100]
Length = 156
Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
++ + DL+ LK ++ + +D+GTK +GLA+SD R+ A P + R K T A++LL+
Sbjct: 5 LVPLPDLISRLKRDERLMGLDVGTKTVGLALSDVMRQIATPFDTIRRTKFTADAVKLLAH 64
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ + ++GLP+N++G+EGPR STRAFV ++ +P FWDERL+T +A+++L
Sbjct: 65 CKAQGVGGLVVGLPVNLDGTEGPRAQSTRAFVRSL-GALTDMPMAFWDERLSTAAAERVL 123
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
++ + SRK+R + +D +AAA ILQ LDR+++
Sbjct: 124 LEADASRKRRAEVIDKMAAAYILQGALDRVNY 155
>gi|167037467|ref|YP_001665045.1| Holliday junction resolvase-like protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115881|ref|YP_004186040.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|226695311|sp|B0K996|RUVX_THEP3 RecName: Full=Putative Holliday junction resolvase
gi|166856301|gb|ABY94709.1| Holliday junction resolvase YqgF [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928972|gb|ADV79657.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 139
Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G K IG+AISD A + R + + I + I+GLP
Sbjct: 2 RIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMNG+ GP+ FV ++ +P + WDERLTTV AQ++LI+ ++SR KR + +
Sbjct: 62 NMNGTLGPQGQKVMRFVEHL-KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEVI 120
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LD
Sbjct: 121 DKLAAVLILQNYLDS 135
>gi|153854408|ref|ZP_01995686.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814]
gi|149752934|gb|EDM62865.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814]
Length = 146
Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 4/140 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+A+SDP A + RK K+ +T + + I + ++G
Sbjct: 4 RIMGLDYGSKTVGVAVSDPLGITAQGVETICRKDENKLRKTCARIEALIEEYQVTKIVLG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +MN G R + AF M+ R+ + V WDERLTTV A++ LI+ V R+ R +
Sbjct: 64 LPKHMNNDIGDRAEKSMAFGE-MLKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKK 122
Query: 135 KVDSIAAALILQEVLDRISF 154
+D IAA ILQ LD ++
Sbjct: 123 YIDKIAAVFILQGYLDSLAH 142
>gi|319898952|ref|YP_004159045.1| resolvase [Bartonella clarridgeiae 73]
gi|319402916|emb|CBI76467.1| putative resolvase [Bartonella clarridgeiae 73]
Length = 164
Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 80/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MAIININEVTTHLLLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIHRKKFTLDALTLV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ A +IGLP+NM+GS GPRV +T+ FV NM +PFVFWDERL+T +A++
Sbjct: 61 KVFNNENVGAIVIGLPINMDGSNGPRVQATKTFVSNMA-MYTKIPFVFWDERLSTTAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L+++++SR KR ++DS AAA ILQ LDRI L S+
Sbjct: 120 YLLEIDMSRSKRKSRIDSAAAAFILQGALDRIQTLPSN 157
>gi|15894957|ref|NP_348306.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum ATCC 824]
gi|32130056|sp|Q97IG1|RUVX_CLOAB RecName: Full=Putative Holliday junction resolvase
gi|15024643|gb|AAK79646.1|AE007678_2 Predicted endonuclease involved in recombination [Clostridium
acetobutylicum ATCC 824]
Length = 135
Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ID+G K IG+A+SDP A + RK + EL + + GLP
Sbjct: 2 RILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ G + F +I + + VP WDERLTTV+A + +++ ++SRKKR + VD
Sbjct: 62 NMNGTIGFQSEKVLGFCE-VIKQNINVPIKMWDERLTTVTANRAMLEADLSRKKRKKLVD 120
Query: 138 SIAAALILQEVLDRI 152
+AA ILQ L+ I
Sbjct: 121 KVAATYILQGYLNSI 135
>gi|302874707|ref|YP_003843340.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
gi|307690680|ref|ZP_07633126.1| Holliday junction resolvase-like protein [Clostridium cellulovorans
743B]
gi|302577564|gb|ADL51576.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
Length = 135
Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D+G K IG+A+SDP A + RK + ++++ + ++GLP
Sbjct: 2 RVLGLDVGNKTIGVAVSDPLGFTAQGITTINRKNIKTDIETVVNYCNEYTVDTIVVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ AFV + + + WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTLGPQSEKVMAFVEKL-KKNTDINIKMWDERLTTVAAHKAMLEADLSRAKRNKIVD 120
Query: 138 SIAAALILQEVLDRI 152
+AA ILQ LD I
Sbjct: 121 KVAATYILQGYLDSI 135
>gi|92117802|ref|YP_577531.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14]
gi|91800696|gb|ABE63071.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14]
Length = 168
Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
S+L + + + +DLGTK IG+A+SDP RR A L RK T A LL+
Sbjct: 9 SVLPLIEAAAHWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTADAARLLA 68
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
N A F++GLP+NM+GSEGPR STRAF N+ R + WDERL+TV+ ++
Sbjct: 69 IAGERNAAGFVLGLPINMDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTVAVERE 127
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M++SR KR + +D AA ILQ LDR++ L +
Sbjct: 128 LIGMDMSRAKRAKVIDEHAAIFILQGALDRLAVLRRT 164
>gi|291087071|ref|ZP_06345320.2| putative Holliday junction resolvase [Clostridium sp. M62/1]
gi|291076386|gb|EFE13750.1| putative Holliday junction resolvase [Clostridium sp. M62/1]
Length = 175
Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K G+A+SDP A +VRK K+ QT + I I A ++G
Sbjct: 37 RIMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLG 96
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R T +F M++R+ P + WDERLTT++A+++L++ V R+ R
Sbjct: 97 YPKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKA 155
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AAALILQ LD
Sbjct: 156 VIDKVAAALILQGYLDSQR 174
>gi|18310760|ref|NP_562694.1| Holliday junction resolvase-like protein [Clostridium perfringens
str. 13]
gi|110799090|ref|YP_696464.1| Holliday junction resolvase-like protein [Clostridium perfringens
ATCC 13124]
gi|110803306|ref|YP_699063.1| Holliday junction resolvase-like protein [Clostridium perfringens
SM101]
gi|168207854|ref|ZP_02633859.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E
str. JGS1987]
gi|168211403|ref|ZP_02637028.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B
str. ATCC 3626]
gi|168214255|ref|ZP_02639880.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
CPE str. F4969]
gi|168218243|ref|ZP_02643868.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
NCTC 8239]
gi|182625715|ref|ZP_02953484.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D
str. JGS1721]
gi|32130045|sp|Q8XJH8|RUVX_CLOPE RecName: Full=Putative Holliday junction resolvase
gi|118597205|sp|Q0TPH6|RUVX_CLOP1 RecName: Full=Putative Holliday junction resolvase
gi|118597206|sp|Q0SS44|RUVX_CLOPS RecName: Full=Putative Holliday junction resolvase
gi|18145441|dbj|BAB81484.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110673737|gb|ABG82724.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
ATCC 13124]
gi|110683807|gb|ABG87177.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
SM101]
gi|170660825|gb|EDT13508.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E
str. JGS1987]
gi|170710607|gb|EDT22789.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B
str. ATCC 3626]
gi|170714263|gb|EDT26445.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
CPE str. F4969]
gi|177909117|gb|EDT71592.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D
str. JGS1721]
gi|182379748|gb|EDT77227.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
NCTC 8239]
Length = 137
Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G+K IG+A+SDP A + R T+ ++ + + G+P
Sbjct: 2 RILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVAGMPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP + I++ FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTIGPSGEMVKNLCEQ-IEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
IAA ILQ LDRIS
Sbjct: 121 KIAATYILQGYLDRIS 136
>gi|158424464|ref|YP_001525756.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571]
gi|158331353|dbj|BAF88838.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571]
Length = 185
Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats.
Identities = 64/152 (42%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
++ + ++ +L + +DLGTK IG+A DP RR A + R K TQ A L+
Sbjct: 31 TVGPLAEIAAALPERGSLLGLDLGTKTIGVATCDPDRRLATVVETVKRTKFTQDAERLMV 90
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ AF++GLPLNM+GSEGPRV ++RAF N R +P FWDERL+TV+ ++
Sbjct: 91 LASERKAVAFVLGLPLNMDGSEGPRVQASRAFARNFA-RLSGLPIAFWDERLSTVAVERA 149
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
LI +VSR KR +D AAA ILQ +D ++
Sbjct: 150 LISADVSRAKRANVIDQHAAAFILQGAIDFLN 181
>gi|118597217|sp|Q1QL26|RUVX_NITHX RecName: Full=Putative Holliday junction resolvase
Length = 163
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
S+L + + + +DLGTK IG+A+SDP RR A L RK T A LL+
Sbjct: 4 SVLPLIEAAAHWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTADAARLLA 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
N A F++GLP+NM+GSEGPR STRAF N+ R + WDERL+TV+ ++
Sbjct: 64 IAGERNAAGFVLGLPINMDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTVAVERE 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M++SR KR + +D AA ILQ LDR++ L +
Sbjct: 123 LIGMDMSRAKRAKVIDEHAAIFILQGALDRLAVLRRT 159
>gi|114771780|ref|ZP_01449173.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255]
gi|114547596|gb|EAU50487.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255]
Length = 156
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 59/145 (40%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
+ L + + +DLGTK IG+A+SD A PR + RKK L + + +
Sbjct: 9 EFASELTKFKSLIGLDLGTKTIGIAVSDTLWTVATPRETIKRKKFGIDCDALQTVFNSTD 68
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I+GLP+NM+GSEGPR +TRAF N+ R +P FWDERL++V+A++ +++ ++
Sbjct: 69 TGGIILGLPMNMDGSEGPRCQATRAFARNLSSR-CDIPITFWDERLSSVAAERAMLEADM 127
Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152
SR KR +D +AA+ ILQ LDRI
Sbjct: 128 SRAKRADNIDHVAASFILQGALDRI 152
>gi|319405723|emb|CBI79346.1| putative resolvase [Bartonella sp. AR 15-3]
Length = 163
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MAIISINEVTIHLLFGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ A I+GLP+NMNGS GPRV +T+ FV NM +PF+FWDERL+T++A++
Sbjct: 61 EIFNNENVGAIIVGLPINMNGSNGPRVQATKTFVSNMAT-YTKIPFIFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
++MN+SR KR ++DS AAA ILQ LDRI L+S+
Sbjct: 120 YFLEMNMSRSKRKSRIDSAAAAFILQGALDRIKTLQSN 157
>gi|144897944|emb|CAM74808.1| Holliday junction resolvase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 163
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 62/150 (41%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IL I +L +L + + +DLGTK IGLA+SD A P + R K T+ A L
Sbjct: 1 MPILPIAELKTALPRHARLMGLDLGTKTIGLALSDVRLSIASPFDTIRRTKFTKDAEALF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + A ++GLP+ M+G+EG R STRAF N++ + +P VFWDERL+T + +
Sbjct: 61 AALDKHEAAGIVLGLPVEMDGTEGARCQSTRAFARNLLGLR-DLPIVFWDERLSTAAVTR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L++ + SR +R + VD +AAA ILQ LD
Sbjct: 120 TLLEADSSRARRAEVVDKMAAAYILQGALD 149
>gi|289578245|ref|YP_003476872.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
gi|289527958|gb|ADD02310.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
Length = 139
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G K IG+AISD A + R + + I + I+GLP
Sbjct: 2 RIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMNG+ GP+ FV ++ + +P + WDERLTTV A+++LI+ ++SR KR + +
Sbjct: 62 NMNGTLGPQGQKVVRFVEHL-KKAFSIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LD
Sbjct: 121 DKLAAVLILQNYLDS 135
>gi|254712407|ref|ZP_05174218.1| Holliday junction resolvase-like protein [Brucella ceti M644/93/1]
gi|254715479|ref|ZP_05177290.1| Holliday junction resolvase-like protein [Brucella ceti M13/05/1]
gi|261217214|ref|ZP_05931495.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261320085|ref|ZP_05959282.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|260922303|gb|EEX88871.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292775|gb|EEX96271.1| conserved hypothetical protein [Brucella ceti M644/93/1]
Length = 162
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 80/158 (50%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FA+PRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAYPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR ++DS AAA ILQ LDR+ + +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157
>gi|17989017|ref|NP_541650.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1
str. 16M]
gi|148558591|ref|YP_001257584.1| Holliday junction resolvase-like protein [Brucella ovis ATCC 25840]
gi|256043494|ref|ZP_05446421.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1
str. Rev.1]
gi|260564689|ref|ZP_05835174.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M]
gi|265989912|ref|ZP_06102469.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|32130048|sp|Q8YC60|RUVX_BRUME RecName: Full=Putative Holliday junction resolvase
gi|167012699|sp|A5VUS9|RUVX_BRUO2 RecName: Full=Putative Holliday junction resolvase
gi|17984856|gb|AAL53914.1| DNA integration/recombination/invertion protein [Brucella
melitensis bv. 1 str. 16M]
gi|148369876|gb|ABQ62748.1| conserved hypothetical protein TIGR00250 [Brucella ovis ATCC 25840]
gi|260152332|gb|EEW87425.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M]
gi|263000581|gb|EEZ13271.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
Length = 162
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 80/158 (50%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+ ++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAVER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR ++DS AAA ILQ LDR+ + +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157
>gi|62317546|ref|YP_223399.1| Holliday junction resolvase-like protein [Brucella abortus bv. 1
str. 9-941]
gi|83269527|ref|YP_418818.1| Holliday junction resolvase-like protein [Brucella melitensis
biovar Abortus 2308]
gi|189022801|ref|YP_001932542.1| Ribonuclease RNase H fold containing [Brucella abortus S19]
gi|237817094|ref|ZP_04596086.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|254691043|ref|ZP_05154297.1| Holliday junction resolvase-like protein [Brucella abortus bv. 6
str. 870]
gi|254695650|ref|ZP_05157478.1| Holliday junction resolvase-like protein [Brucella abortus bv. 3
str. Tulya]
gi|254698827|ref|ZP_05160655.1| Holliday junction resolvase-like protein [Brucella abortus bv. 2
str. 86/8/59]
gi|254732274|ref|ZP_05190852.1| Holliday junction resolvase-like protein [Brucella abortus bv. 4
str. 292]
gi|256256228|ref|ZP_05461764.1| Holliday junction resolvase-like protein [Brucella abortus bv. 9
str. C68]
gi|260544782|ref|ZP_05820603.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC
8038]
gi|260756639|ref|ZP_05868987.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870]
gi|260760069|ref|ZP_05872417.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292]
gi|260763308|ref|ZP_05875640.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str.
86/8/59]
gi|260882456|ref|ZP_05894070.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261216050|ref|ZP_05930331.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str.
Tulya]
gi|297249585|ref|ZP_06933286.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196]
gi|81309292|sp|Q577Z6|RUVX_BRUAB RecName: Full=Putative Holliday junction resolvase
gi|146325555|sp|Q2YKL6|RUVX_BRUA2 RecName: Full=Putative Holliday junction resolvase
gi|226725492|sp|B2SB59|RUVX_BRUA1 RecName: Full=Putative Holliday junction resolvase
gi|62197739|gb|AAX76038.1| conserved hypothetical protein TIGR00250 [Brucella abortus bv. 1
str. 9-941]
gi|82939801|emb|CAJ12809.1| Conserved hypothetical protein 250:Ribonuclease RNase H fold
containing [Brucella melitensis biovar Abortus 2308]
gi|189021375|gb|ACD74096.1| Ribonuclease RNase H fold containing [Brucella abortus S19]
gi|237787907|gb|EEP62123.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|260098053|gb|EEW81927.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC
8038]
gi|260670387|gb|EEX57327.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292]
gi|260673729|gb|EEX60550.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str.
86/8/59]
gi|260676747|gb|EEX63568.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870]
gi|260871984|gb|EEX79053.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260917657|gb|EEX84518.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str.
Tulya]
gi|297173454|gb|EFH32818.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196]
Length = 162
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIMIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR ++DS AAA ILQ LDR+ + +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157
>gi|326390159|ref|ZP_08211720.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
200]
gi|325993807|gb|EGD52238.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
200]
Length = 139
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G K IG+AISD A + R + + I + I+GLP
Sbjct: 2 RIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMNG+ GP+ FV ++ + +P + WDERLTTV A+++LI+ ++SR KR + +
Sbjct: 62 NMNGTLGPQGQKVVRFVEHL-KEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LD
Sbjct: 121 DKLAAVLILQNYLDS 135
>gi|210622572|ref|ZP_03293254.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275]
gi|210154155|gb|EEA85161.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275]
Length = 140
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+A+SD A + R E+ I + + + GLP
Sbjct: 4 GRIMGLDIGDKTIGVAVSDLMGMTAQGIKTIKRTSKKNDIEEIKQIIKEKQVNLIVSGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ + F +I + + FWDERLTTV+A++ LI +VSRKKR +
Sbjct: 64 KNMNGTVGPQGEKVQKFCE-LIKEETGLEIEFWDERLTTVAAEKTLITADVSRKKRKNVI 122
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 123 DMMAAVLILQGYLD 136
>gi|23015713|ref|ZP_00055482.1| COG0816: Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Magnetospirillum magnetotacticum MS-1]
Length = 159
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 62/153 (40%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K T+ A +LL
Sbjct: 5 MPILSPVELLGSLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTKDAEQLL 64
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +++ ++GLP+ M+G EGPR S R+F N+ + +P +WDERL+T + +
Sbjct: 65 AIVDKQDVGGLVLGLPVEMDGFEGPRCQSVRSFAANLARLR-DMPIAYWDERLSTSAVTR 123
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
L++ + SRK+R + VD +AAA ILQ +LD S
Sbjct: 124 TLLEADSSRKRRAEVVDKMAAAYILQGLLDNRS 156
>gi|159043613|ref|YP_001532407.1| Holliday junction resolvase-like protein [Dinoroseobacter shibae
DFL 12]
gi|157911373|gb|ABV92806.1| holliday junction resolvase YqgF [Dinoroseobacter shibae DFL 12]
Length = 163
Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats.
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + + + + +DLGT IG+A+SD A P + RKK A L
Sbjct: 3 MIFDDLAAFRAVVPAGRALMGLDLGTATIGVAVSDLMWSVATPLETVKRKKFGLDAARLE 62
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + ++ I+GLP NM+GSEGPR STRAF N R+ +P FWDERL+TV+A++
Sbjct: 63 ALMDARDVGGLILGLPRNMDGSEGPRAQSTRAFARNFTARRP-IPIAFWDERLSTVAAER 121
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
L++ + SR +R + +D +AA+ ILQ LDR +
Sbjct: 122 ALLEADTSRARRAEVIDHVAASYILQGALDRFGHMRREA 160
>gi|168186829|ref|ZP_02621464.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
gi|169295213|gb|EDS77346.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
Length = 135
Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G + IG+A+SDP A + RK V + EL + I GLP
Sbjct: 2 RILGLDVGDRTIGVAVSDPLGFTAQGVTTIHRKNVEEDIDELKKICKEYAVELIISGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ G + F +++ K+ +P WDERLTTV+A + +++ N+SR KR + VD
Sbjct: 62 NMNGTVGEQGEKVIEFC-DILKTKLEIPIKMWDERLTTVAAHKAMLEANLSRAKRKKIVD 120
Query: 138 SIAAALILQEVLDRI 152
+AA ILQ LD I
Sbjct: 121 KMAATYILQGYLDSI 135
>gi|167628659|ref|YP_001679158.1| holliday junction resolvase, putative [Heliobacterium modesticaldum
Ice1]
gi|226725525|sp|B0TFZ0|RUVX_HELMI RecName: Full=Putative Holliday junction resolvase
gi|167591399|gb|ABZ83147.1| holliday junction resolvase, putative [Heliobacterium modesticaldum
Ice1]
Length = 149
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G K IG+A+SD A + R ++ L + T + + GLP
Sbjct: 2 RIMGLDVGDKTIGVAVSDLMGWTAQGVATIRRSRLAADLEHLRELVKTYEVERIVCGLPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR R F +++++K+ +P +WDERLTTV+AQ+ LI ++SR KR Q VD
Sbjct: 62 NMNGTYGPRAEGIRKFG-SLVEKKLNIPVDYWDERLTTVAAQKTLIAGDLSRAKRKQVVD 120
Query: 138 SIAAALILQEVLDRISFLESSK 159
+AA LILQ +D + L + +
Sbjct: 121 KLAAVLILQNYMDAKAHLAAKE 142
>gi|294792100|ref|ZP_06757248.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27]
gi|294793971|ref|ZP_06759108.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44]
gi|294455541|gb|EFG23913.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44]
gi|294457330|gb|EFG25692.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27]
Length = 136
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+G++ IG+A SD A + R + + L I+ + ++G+P NM
Sbjct: 1 MSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELISEYEVHELVVGMPKNM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG++G R T FV M + +P +WDERL+TV A++ LI +VSRKKR +D +
Sbjct: 61 NGTKGERAEKTEEFVAKM-KEVIDLPVTYWDERLSTVMAERQLIAADVSRKKRKSVIDKM 119
Query: 140 AAALILQEVLDRISF 154
AA +ILQ LDR+ F
Sbjct: 120 AAVVILQGYLDRLQF 134
>gi|91977491|ref|YP_570150.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5]
gi|123735326|sp|Q135J0|RUVX_RHOPS RecName: Full=Putative Holliday junction resolvase
gi|91683947|gb|ABE40249.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5]
Length = 160
Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
IL + + + +DLGTK IG+A+SDP R+ A + R T A +L+
Sbjct: 4 PILPLIEAAAHWPARGALLGLDLGTKTIGVAVSDPDRKLATGIETVARTAFTADAKRVLA 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ F++GLPLNM+GSEGPR STRAF N R +P WDERL+T + ++
Sbjct: 64 LAAERSACGFVLGLPLNMDGSEGPRAQSTRAFARNFA-RLTELPIGLWDERLSTAAVERA 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI +VSR KR + +D AA ILQ LDR+ L +
Sbjct: 123 LIANDVSRAKRAKIIDEHAAIYILQGALDRLVALNRA 159
>gi|261405445|ref|YP_003241686.1| Holliday junction resolvase YqgF [Paenibacillus sp. Y412MC10]
gi|261281908|gb|ACX63879.1| Holliday junction resolvase YqgF [Paenibacillus sp. Y412MC10]
Length = 137
Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D G +RIG+AISD A + R++ + + + + ++GL
Sbjct: 1 MKKIMGLDYGDRRIGVAISDAFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR F + + + + +P WDERL+TVSA++ L++ +VSRKKR Q
Sbjct: 61 PKNMNGTIGPRGEICMEFANTLRE-SLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQV 119
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AA+LILQ LD
Sbjct: 120 VDKMAASLILQNYLDSKR 137
>gi|239627761|ref|ZP_04670792.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517907|gb|EEQ57773.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 150
Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats.
Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
N I +D G+K +G+A+ DP A + RK K+ QT + + I I +
Sbjct: 2 NMRIMGLDFGSKTVGVAVCDPLGITAQTVETITRKDENKLRQTLARIEALIGQYEIERIV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P NMN + G R T F ++ +R+ +P V WDERLTTV+A ++LI+ V R+ R
Sbjct: 62 LGYPKNMNNTLGERAVKTEEFKTSL-ERRTGLPVVLWDERLTTVAASRVLIESGVRREHR 120
Query: 133 IQKVDSIAAALILQEVLDRIS 153
+ VD IAAA+ILQ LD +S
Sbjct: 121 KESVDQIAAAMILQGYLDSLS 141
>gi|291563945|emb|CBL42761.1| conserved hypothetical protein TIGR00250 [butyrate-producing
bacterium SS3/4]
Length = 144
Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 80/136 (58%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+A+SD A + RK K+ +T + I + ++G
Sbjct: 2 RILGLDFGSKTVGVAVSDGLLLTAQGVETIERKDENKLRKTCARIEELIAEYEVTEIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NM+ +EG RV T+AF M++R+ +P +WDERLTTV+A+QIL++ V R+ R
Sbjct: 62 LPKNMDNTEGERVEKTKAFGE-MLERRTGLPVHYWDERLTTVAAEQILMESGVRRENRKA 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 121 VIDKVAAGLILQGYLD 136
>gi|118442957|ref|YP_878351.1| Holliday junction resolvase-like protein [Clostridium novyi NT]
gi|167012715|sp|A0Q149|RUVX_CLONN RecName: Full=Putative Holliday junction resolvase
gi|118133413|gb|ABK60457.1| Putative Holliday junction resolvase [Clostridium novyi NT]
Length = 135
Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D+G + IG+A+SDP A + RK V + EL + I GLP
Sbjct: 2 RVLGLDVGDRTIGVAVSDPLGFTAQGITTVHRKSVKEDIDELKKICKEYAVELIISGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ G + F ++ ++ +P WDERLTTV+A + +++ N+SR KR + VD
Sbjct: 62 NMNGTVGEQGEKVIEFCE-LLKSELKMPIKMWDERLTTVAAHRAMLEANLSRAKRKKIVD 120
Query: 138 SIAAALILQEVLDRI 152
+AA ILQ LD I
Sbjct: 121 KMAATYILQGYLDSI 135
>gi|153010985|ref|YP_001372199.1| Holliday junction resolvase YqgF [Ochrobactrum anthropi ATCC 49188]
gi|167012742|sp|A6X566|RUVX_OCHA4 RecName: Full=Putative Holliday junction resolvase
gi|151562873|gb|ABS16370.1| Holliday junction resolvase YqgF [Ochrobactrum anthropi ATCC 49188]
Length = 165
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 78/159 (49%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ IE++ L+ Q IA +DLGTK IGLA+SD G FAHPRP + R K + A LL
Sbjct: 1 MAVVEIEEIPALLQSGQTIAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFSIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALDADKVGVIVIGLPMNMDGTSGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
LI M+VSR KR ++DS AA+ ILQ LDR+ + S
Sbjct: 120 ALIGMDVSRGKRADRIDSAAASFILQGALDRLHSIRRSA 158
>gi|331085955|ref|ZP_08335038.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330406878|gb|EGG86383.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 151
Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats.
Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 4/144 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+AISDP A + RK K+ +T + + + + ++G
Sbjct: 2 RIMGLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R + F M++R+ +P WDERLTTV A++ LI+ NV R+ R +
Sbjct: 62 FPKNMNNTVGDRAEKSLEF-KEMLERRTALPVTMWDERLTTVEAERTLIENNVRREDRKK 120
Query: 135 KVDSIAAALILQEVLDRISFLESS 158
VD IAA ILQ LD + F + S
Sbjct: 121 YVDKIAAVFILQGYLDSVYFRQKS 144
>gi|315645822|ref|ZP_07898943.1| Holliday junction resolvase YqgF [Paenibacillus vortex V453]
gi|315278583|gb|EFU41897.1| Holliday junction resolvase YqgF [Paenibacillus vortex V453]
Length = 137
Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D G +RIG+AISD A + R++ + + + + + ++GL
Sbjct: 1 MKKIMGLDYGDRRIGVAISDVFGWTAQGVEVIERRRDEGELVRIATLVKENEVGEVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR F + + + + +P WDERL+TVSA++ L++ +VSRKKR Q
Sbjct: 61 PKNMNGTIGPRGEICMEFANTLRE-SLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQV 119
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AA+LILQ LD
Sbjct: 120 VDKMAASLILQNYLDSKR 137
>gi|86749549|ref|YP_486045.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2]
gi|146325600|sp|Q2IXC6|RUVX_RHOP2 RecName: Full=Putative Holliday junction resolvase
gi|86572577|gb|ABD07134.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2]
Length = 160
Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
IL + + + +DLGTK IG+A+SDP RR A + RK T A LL+
Sbjct: 5 ILPLIEAAGHWPARGSLLGLDLGTKTIGVAVSDPDRRLATGIETVARKAFTADAQRLLAL 64
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
N F++GLPLNM+GSEGPRV STRAF N R +P WDERL+T + ++ L
Sbjct: 65 AAGRNACGFVLGLPLNMDGSEGPRVQSTRAFARNFA-RLTELPIGLWDERLSTAAVEREL 123
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
I +VSR KR + +D AA ILQ LDR++ L +
Sbjct: 124 IANDVSRAKRAKIIDEHAAIYILQGALDRLATLNRA 159
>gi|164688537|ref|ZP_02212565.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM
16795]
gi|164602950|gb|EDQ96415.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM
16795]
Length = 141
Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D+G K IG+A+SD A + R+ + EL + I + + GL
Sbjct: 3 DGRIMGLDIGDKTIGVAVSDIMGITAQGVKTIRRESKKKDIEELKNIIKERQVNKIVSGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP+ +I + + FWDERLTTV+A++ LI+ +VSRKKR +
Sbjct: 63 PKNMNGTLGPQGEKVLKLCE-LIKEETGLEIDFWDERLTTVAAERSLIEGDVSRKKRKKV 121
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD S
Sbjct: 122 IDMLAAVIILQGYLDSKS 139
>gi|311031560|ref|ZP_07709650.1| Holliday junction resolvase-like protein [Bacillus sp. m3-13]
Length = 138
Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISD A + + + L I ++GL
Sbjct: 2 RILGLDVGSKTVGVAISDEMGWTAQGLETIKIDEAIKNLGFKRLKQIIAEYKPEKVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNGS GPR +++ + M+ K +P ++WDERL+TV+A++IL+ +VSRKKR Q
Sbjct: 62 PKNMNGSIGPRGEASKHYGE-MLTAKTGLPVIYWDERLSTVAAERILLSADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 121 IDKMAAVVILQGYLDS 136
>gi|220931424|ref|YP_002508332.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
gi|254767518|sp|B8D2B0|RUVX_HALOH RecName: Full=Putative Holliday junction resolvase
gi|219992734|gb|ACL69337.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
Length = 140
Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D G +RIG+AISD A + ++RK + + I + I+G+P
Sbjct: 2 RIMGLDYGDRRIGVAISDKLGMTAQGQEVIIRKTPEEDLEVIKGLIDKYEVEEIIVGMPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GS GPR TR F+ + + + + P WDERL+TV A+++LI+ +VSRKKR +D
Sbjct: 62 NMDGSLGPRAEKTRDFI-DFLQKSLDTPVKVWDERLSTVEAERVLIEADVSRKKRKGVID 120
Query: 138 SIAAALILQEVLDRISFLE 156
+AA++ILQ L+ + L
Sbjct: 121 KVAASIILQGYLNYQNKLH 139
>gi|323702199|ref|ZP_08113866.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
574]
gi|323532886|gb|EGB22758.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
574]
Length = 140
Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLP 76
+ +D+G K IG+A+SDP A + R + + L + + ++GLP
Sbjct: 2 RVMGLDVGDKTIGVALSDPLGWTAQALEVIRRGDNLDKDLNRLAEIVQEYQVEQILVGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ AF+ + +R + +P WDERL+TV+A++ L++ +VSR KR + +
Sbjct: 62 KNMNGTLGPQGEKVLAFIERLKER-INLPVKTWDERLSTVAAERALLEADVSRSKRKKVI 120
Query: 137 DSIAAALILQEVLDR 151
D +AAA+ILQ LD
Sbjct: 121 DKMAAAVILQGYLDS 135
>gi|329926758|ref|ZP_08281166.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF5]
gi|328938958|gb|EGG35326.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF5]
Length = 137
Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D G +RIG+AISD A + R++ + + + + ++GL
Sbjct: 1 MKKIMGLDYGDRRIGVAISDVFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR F + + + + +P WDERL+TVSA++ L++ +VSRKKR Q
Sbjct: 61 PKNMNGTIGPRGEICMEFANTLRE-SLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQV 119
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AA+LILQ LD
Sbjct: 120 VDKMAASLILQNYLDSKR 137
>gi|255655297|ref|ZP_05400706.1| putative holliday junction resolvase [Clostridium difficile
QCD-23m63]
gi|296451281|ref|ZP_06893021.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP08]
gi|296880367|ref|ZP_06904330.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP07]
gi|296259887|gb|EFH06742.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP08]
gi|296428608|gb|EFH14492.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP07]
Length = 141
Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D+G K IG+A+SD A + R + EL + I + + + GL
Sbjct: 3 DGRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP+ F ++ + + FWDERL+TV+A++ L++ +VSR+KR +
Sbjct: 63 PKNMNGTLGPQGEKVIKFCE-LVKEETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 122 IDMLAAVIILQGYLD 136
>gi|160940886|ref|ZP_02088226.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
BAA-613]
gi|158436130|gb|EDP13897.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
BAA-613]
Length = 171
Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFI 72
N I +D G+K +G+A+ DP A + R K+ QT + I I +
Sbjct: 30 NMRIMGLDFGSKTVGVAVCDPLGITAQTVETITRASENKMRQTLARIEQLIGEYEIERIV 89
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P NMN + G R T+ F + +R+ + + WDERLTTV+A+++LI+ V R+ R
Sbjct: 90 LGYPKNMNNTVGERGEKTQEFKAAL-ERRTGLEVILWDERLTTVAAERVLIESGVRRENR 148
Query: 133 IQKVDSIAAALILQEVLDRISF 154
+ VD IAAA+ILQ LD + +
Sbjct: 149 KKSVDQIAAAMILQGYLDSLQY 170
>gi|299135137|ref|ZP_07028328.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2]
gi|298590114|gb|EFI50318.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2]
Length = 165
Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
IL + + P + +DLGTK IG+A+SDP RR A + RK T+ A ELL
Sbjct: 10 ILPLTEAATHWTPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKTFTKDAAELLRI 69
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ F++GLP+NM+GSEGPR STRAF N + + WDERL+T + ++ L
Sbjct: 70 AGERASSGFVLGLPINMDGSEGPRAQSTRAFARNF-SKLTDLAIGLWDERLSTAAVEREL 128
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
I +VSR +R + +D AA ILQ LDR++ L
Sbjct: 129 IANDVSRARRAEVIDEHAAIFILQGALDRLAALSRQ 164
>gi|307265209|ref|ZP_07546768.1| Holliday junction resolvase YqgF [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306919831|gb|EFN50046.1| Holliday junction resolvase YqgF [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 139
Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats.
Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G K IG+AISD A + R + + I + I+GLP
Sbjct: 2 RIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NM+G+ GP+ FV ++ +P + WDERLTTV AQ++LI+ ++SR KR + +
Sbjct: 62 NMSGTLGPQGQKVVRFVEHL-KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEVI 120
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LD
Sbjct: 121 DKLAAVLILQNYLDS 135
>gi|254519280|ref|ZP_05131336.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
gi|226913029|gb|EEH98230.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
Length = 138
Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G+K IG+AISDP A + R K Q E+ ++ +IGLP
Sbjct: 2 RILGLDVGSKTIGVAISDPLGWTAQGITTIRRSKKEQDIEEIKKLCKEYSVETIVIGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ G +I + WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTIGESGERVLELSE-IIKEATGIKVEMWDERLTTVAAHKAMLEADLSRGKRKKIVD 120
Query: 138 SIAAALILQEVLDRISF 154
IAA ILQ LDR+S
Sbjct: 121 KIAATYILQGYLDRLSM 137
>gi|288958770|ref|YP_003449111.1| holliday junction resolvase [Azospirillum sp. B510]
gi|288911078|dbj|BAI72567.1| holliday junction resolvase [Azospirillum sp. B510]
Length = 178
Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 97/156 (62%), Gaps = 5/156 (3%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
I +EDL L NQ + +D+GTK +GLA++DPG A P L R K TQ A EL
Sbjct: 2 IHTLEDLAARLGRNQRLLGLDVGTKTVGLAVADPGLIVASPIGTLKRTKFTQDARELGKT 61
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV----PFVFWDERLTTVSA 118
I I ++GLPLNM+GSEGPR S RAF +N+++R + FWDERL+T +
Sbjct: 62 IRDYGIGGLVVGLPLNMDGSEGPRAESVRAFANNLLERSDLLGWEAEIAFWDERLSTSAV 121
Query: 119 QQILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
++ +I + +++RK+R + VD +AAA ILQ LD ++
Sbjct: 122 ERFMIGEADMTRKRRDEVVDKMAAAYILQGALDMLA 157
>gi|126698882|ref|YP_001087779.1| putative holliday junction resolvase [Clostridium difficile 630]
gi|254974830|ref|ZP_05271302.1| putative holliday junction resolvase [Clostridium difficile
QCD-66c26]
gi|255092218|ref|ZP_05321696.1| putative holliday junction resolvase [Clostridium difficile CIP
107932]
gi|255100303|ref|ZP_05329280.1| putative holliday junction resolvase [Clostridium difficile
QCD-63q42]
gi|255306242|ref|ZP_05350414.1| putative holliday junction resolvase [Clostridium difficile ATCC
43255]
gi|255313957|ref|ZP_05355540.1| putative holliday junction resolvase [Clostridium difficile
QCD-76w55]
gi|255516637|ref|ZP_05384313.1| putative holliday junction resolvase [Clostridium difficile
QCD-97b34]
gi|255649736|ref|ZP_05396638.1| putative holliday junction resolvase [Clostridium difficile
QCD-37x79]
gi|260682892|ref|YP_003214177.1| putative holliday junction resolvase [Clostridium difficile CD196]
gi|260686490|ref|YP_003217623.1| putative holliday junction resolvase [Clostridium difficile R20291]
gi|306519845|ref|ZP_07406192.1| putative Holliday junction resolvase [Clostridium difficile
QCD-32g58]
gi|118597204|sp|Q18BF1|RUVX_CLOD6 RecName: Full=Putative Holliday junction resolvase
gi|115250319|emb|CAJ68141.1| putative Holliday junction resolvase [Clostridium difficile]
gi|260209055|emb|CBA62181.1| putative holliday junction resolvase [Clostridium difficile CD196]
gi|260212506|emb|CBE03438.1| putative holliday junction resolvase [Clostridium difficile R20291]
Length = 141
Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D+G K IG+A+SD A + R + EL + I + + + GL
Sbjct: 3 DGRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP+ F ++ + + FWDERL+TV+A++ L++ +VSR+KR +
Sbjct: 63 PKNMNGTLGPQGEKVIKFCE-LVKAETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKV 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 122 IDMLAAVIILQGYLD 136
>gi|46907730|ref|YP_014119.1| Holliday junction resolvase-like protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47093424|ref|ZP_00231189.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
str. 4b H7858]
gi|226224103|ref|YP_002758210.1| hypothetical protein Lm4b_01512 [Listeria monocytogenes Clip81459]
gi|254824439|ref|ZP_05229440.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254852126|ref|ZP_05241474.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|254931437|ref|ZP_05264796.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|255521191|ref|ZP_05388428.1| Holliday junction resolvase-like protein [Listeria monocytogenes
FSL J1-175]
gi|300764832|ref|ZP_07074822.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|62900990|sp|Q71ZG8|RUVX_LISMF RecName: Full=Putative Holliday junction resolvase
gi|259495707|sp|C1KVE9|RUVX_LISMC RecName: Full=Putative Holliday junction resolvase
gi|46880999|gb|AAT04296.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
serotype 4b str. F2365]
gi|47018203|gb|EAL08971.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
str. 4b H7858]
gi|225876565|emb|CAS05274.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258605429|gb|EEW18037.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293582988|gb|EFF95020.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|293593675|gb|EFG01436.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|300514508|gb|EFK41565.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|328465540|gb|EGF36769.1| Holliday junction resolvase-like protein [Listeria monocytogenes
1816]
Length = 138
Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + + + + ++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR +
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVL-ESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 121 IDKLAAVMILQSYLDTTN 138
>gi|16803542|ref|NP_465027.1| Holliday junction resolvase-like protein [Listeria monocytogenes
EGD-e]
gi|224500668|ref|ZP_03669017.1| hypothetical protein LmonF1_13746 [Listeria monocytogenes Finland
1988]
gi|224501558|ref|ZP_03669865.1| hypothetical protein LmonFR_03407 [Listeria monocytogenes FSL
R2-561]
gi|254828264|ref|ZP_05232951.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|254829739|ref|ZP_05234394.1| Holliday junction resolvase-like protein [Listeria monocytogenes
10403S]
gi|254898332|ref|ZP_05258256.1| Holliday junction resolvase-like protein [Listeria monocytogenes
J0161]
gi|254912176|ref|ZP_05262188.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936504|ref|ZP_05268201.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|255018845|ref|ZP_05290971.1| Holliday junction resolvase-like protein [Listeria monocytogenes
FSL F2-515]
gi|290893861|ref|ZP_06556839.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|315282410|ref|ZP_07870829.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120]
gi|32130047|sp|Q8Y723|RUVX_LISMO RecName: Full=Putative Holliday junction resolvase
gi|16410931|emb|CAC99580.1| lmo1502 [Listeria monocytogenes EGD-e]
gi|258600652|gb|EEW13977.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258609098|gb|EEW21706.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|290556578|gb|EFD90114.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|293590149|gb|EFF98483.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|313608700|gb|EFR84531.1| putative Holliday junction resolvase [Listeria monocytogenes FSL
F2-208]
gi|313613944|gb|EFR87669.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120]
Length = 138
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + + + + ++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR +
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 121 IDKLAAVMILQSYLDTTN 138
>gi|308070325|ref|YP_003871930.1| Holliday junction resolvase [Paenibacillus polymyxa E681]
gi|305859604|gb|ADM71392.1| Putative Holliday junction resolvase [Paenibacillus polymyxa E681]
Length = 138
Score = 185 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D G +RIG+A+SD A + R+ ++ + + + ++GLP
Sbjct: 2 KVMGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGDDSEFGKIANLVRDNEVGEIVVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR F + + + +P WDERLTT SA++ L++ +VSRKKR Q VD
Sbjct: 62 NMNGTVGPRGEICIEFANRL-KELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA+LILQ LD S
Sbjct: 121 KLAASLILQNYLDAHS 136
>gi|297544525|ref|YP_003676827.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842300|gb|ADH60816.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 139
Score = 185 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G K IG+AISD A + R + + I + I+GLP
Sbjct: 2 RIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMNG+ GP+ FV ++ + +P + WDERLTTV A+++LI+ ++SR KR + +
Sbjct: 62 NMNGTLGPQGQKVVRFVEHL-KKAFSIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LD
Sbjct: 121 DKLAAILILQNYLDS 135
>gi|253580719|ref|ZP_04857983.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848090|gb|EES76056.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 140
Score = 185 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT---QTALELLSFITTENIAAFIIG 74
+ +D G+K +G+AISDP A + RK+ QT + ++ ++ ++G
Sbjct: 2 RVLGLDYGSKTVGVAISDPLGITAQGVETIWRKQENHLRQTLARIEELVSEYHVEKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R + F M++R+ + + WDERLTTV A + L++ +V R+ R Q
Sbjct: 62 YPKNMNNTIGERAQKSLEF-KEMLERRTGLEVIMWDERLTTVEANRTLMEASVRRENRKQ 120
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA ILQ LD +S
Sbjct: 121 YLDQLAAVFILQGYLDSLS 139
>gi|304407567|ref|ZP_07389219.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus
YK9]
gi|304343518|gb|EFM09360.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus
YK9]
Length = 138
Score = 185 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D G + IG+A+SD A + R+ E+ + + ++GLP
Sbjct: 2 RIMGLDYGDRNIGVAVSDAFGWTAQGTGVVQRRHNRGEFDEIAQLVKDHEVTEIVVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNGS GPR AF + +K+ +P WDERLTTVSA++ L++ +VSRKKR VD
Sbjct: 62 NMNGSVGPRGEICIAFAEEL-QQKLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA ILQ LD +
Sbjct: 121 KLAATFILQNYLDSKA 136
>gi|260886204|ref|ZP_05897467.1| putative holliday junction resolvase [Selenomonas sputigena ATCC
35185]
gi|330838890|ref|YP_004413470.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185]
gi|260864067|gb|EEX78567.1| putative holliday junction resolvase [Selenomonas sputigena ATCC
35185]
gi|329746654|gb|AEC00011.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185]
Length = 149
Score = 185 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 73/139 (52%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + ++D+G + IG+A SD A + RK + L + FI+GL
Sbjct: 2 RKRVLALDVGDRTIGVAASDGLGLTAQGVETIRRKSWDKDFARLKELMELYETDTFIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG++G R R F + + VFWDERL+TV+A++ LI +VSR KR +
Sbjct: 62 PKNMNGTQGERCDVVRDFAQRLQKKFKGSQVVFWDERLSTVAAERSLIAADVSRAKRRKV 121
Query: 136 VDSIAAALILQEVLDRISF 154
+D +AA ILQ LD +
Sbjct: 122 IDKMAAVFILQGYLDNLGM 140
>gi|182418929|ref|ZP_02950186.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237669098|ref|ZP_04529082.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377212|gb|EDT74780.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237657446|gb|EEP55002.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 140
Score = 185 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +DLG K IG+AISDP A + R + +L + +IGL
Sbjct: 1 MKRILGLDLGQKTIGVAISDPLGFTAQGLTTIRRGSKEKDIEDLKKICDEYKVETIVIGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP AF +++ + + FWDERLTTV+A + +++ ++SR KR +
Sbjct: 61 PKNMNGTIGPSGEIAMAFG-KLLEEEFQIEIKFWDERLTTVAAHKAMLEADLSRNKRKKI 119
Query: 136 VDSIAAALILQEVLDRIS 153
VD +A+ ILQ LD IS
Sbjct: 120 VDKVASTYILQGYLDMIS 137
>gi|295092198|emb|CBK78305.1| conserved hypothetical protein TIGR00250 [Clostridium cf.
saccharolyticum K10]
Length = 140
Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K G+A+SDP A +VRK K+ QT + I I A ++G
Sbjct: 2 RIMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R T +F M++R+ P + WDERLTT++A+++L++ V R+ R
Sbjct: 62 YPKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKA 120
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AAALILQ LD
Sbjct: 121 VIDKVAAALILQGYLDSQR 139
>gi|310643513|ref|YP_003948271.1| holliday junction resolvase-like protein [Paenibacillus polymyxa
SC2]
gi|309248463|gb|ADO58030.1| Holliday junction resolvase-like protein [Paenibacillus polymyxa
SC2]
Length = 138
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D G +RIG+A+SD A + R+ ++ + + I ++GLP
Sbjct: 2 KVMGLDYGDRRIGVAVSDAFGWTAQGLVVIERRGDDSEFGKIANLVREHEIGEVVVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR F + + + +P WDERLTT SA++ L++ +VSRKKR Q VD
Sbjct: 62 NMNGTVGPRGEICIEFANRL-KELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA+LILQ LD S
Sbjct: 121 KLAASLILQNYLDAHS 136
>gi|298291510|ref|YP_003693449.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506]
gi|296928021|gb|ADH88830.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506]
Length = 160
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
IL + + L + +DLGTK IG+A SDP RR A + RK+ T A +LS
Sbjct: 5 ILPVAEAAGILPARGSLIGLDLGTKTIGVASSDPDRRIAAGVETIARKQFTPDAGRVLSL 64
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
++GLP+NM+GSEGPR ++RAF N+ R +P + WDERL+T + ++ +
Sbjct: 65 AAARGAVGLVLGLPVNMDGSEGPRAQASRAFARNL-SRLTELPIMLWDERLSTAAVERDM 123
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
I ++SR +R + VD AAA ILQ LDR+ F+ +
Sbjct: 124 IATDMSRARRAEVVDQQAAAFILQGALDRLRFIAEGR 160
>gi|118597214|sp|Q2W6Y3|RUVX_MAGMM RecName: Full=Putative Holliday junction resolvase
Length = 155
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K TQ A LL
Sbjct: 1 MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + + ++GLP+ M+G EGPR S R+F N+ + +P +WDERL+T + +
Sbjct: 61 AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAANLARLR-DMPIAYWDERLSTSAVTR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
L++ + SRK+R + VD +AAA ILQ +LD S
Sbjct: 120 TLLEADSSRKRRAEVVDKMAAAYILQGLLDNRS 152
>gi|16800605|ref|NP_470873.1| Holliday junction resolvase-like protein [Listeria innocua
Clip11262]
gi|32130053|sp|Q92BL1|RUVX_LISIN RecName: Full=Putative Holliday junction resolvase
gi|16414010|emb|CAC96768.1| lin1537 [Listeria innocua Clip11262]
gi|313618843|gb|EFR90723.1| putative Holliday junction resolvase [Listeria innocua FSL S4-378]
gi|313623694|gb|EFR93845.1| putative Holliday junction resolvase [Listeria innocua FSL J1-023]
Length = 138
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + + + + ++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDESRKQFGYDRVKELVLEYEVEKVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR +
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVL-ESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 121 IDKLAAVMILQSYLDTTN 138
>gi|150390226|ref|YP_001320275.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens
QYMF]
gi|149950088|gb|ABR48616.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens
QYMF]
Length = 138
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G + IG+AISD A + R + + L I + ++GLP
Sbjct: 3 RIIGLDVGDRTIGIAISDLMGWTAQGVETIQRISIKKDLQRLEELIAQYEVKKILVGLPK 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ FV + +++ + V WDERL+TV+A++ LI +VSRKKR Q +D
Sbjct: 63 NMNGTIGPQGEKVLLFVERL-EKRFKLEVVTWDERLSTVAAEKFLIGADVSRKKRKQVID 121
Query: 138 SIAAALILQEVLDRIS 153
+AA ILQ LD IS
Sbjct: 122 KLAAVHILQGYLDSIS 137
>gi|315303254|ref|ZP_07873898.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596]
gi|313628366|gb|EFR96855.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596]
Length = 138
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + + + + ++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYERVKELVLEYEVEKVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR +
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 121 IDKLAAVMILQSYLDTTN 138
>gi|313633177|gb|EFS00059.1| putative Holliday junction resolvase [Listeria seeligeri FSL
N1-067]
gi|313637761|gb|EFS03116.1| putative Holliday junction resolvase [Listeria seeligeri FSL
S4-171]
Length = 138
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + + + + ++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR +
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 121 IDKLAAVMILQSYLDTTN 138
>gi|253681805|ref|ZP_04862602.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
gi|253561517|gb|EES90969.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
Length = 135
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G K IG+A+SDP A + RK++ + E+ I I GLP
Sbjct: 2 RILGLDVGNKTIGVAVSDPLGFTAQGITTVHRKELEEDIQEIDKICHEYKIELIISGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ G + F +++ K+ +P WDERLTTV+A + +++ N+SR KR + VD
Sbjct: 62 NMNGTIGEQGEKVLEFC-DVLKEKLDIPIKMWDERLTTVAAHKAMLEANLSRAKRKKIVD 120
Query: 138 SIAAALILQEVLDRI 152
IAA ILQ LD I
Sbjct: 121 KIAATYILQGYLDSI 135
>gi|30022462|ref|NP_834093.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC
14579]
gi|218232910|ref|YP_002369196.1| Holliday junction resolvase-like protein [Bacillus cereus B4264]
gi|228923138|ref|ZP_04086429.1| Holliday junction resolvase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|229071895|ref|ZP_04205106.1| Holliday junction resolvase [Bacillus cereus F65185]
gi|229111859|ref|ZP_04241405.1| Holliday junction resolvase [Bacillus cereus Rock1-15]
gi|229129667|ref|ZP_04258635.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4]
gi|229146957|ref|ZP_04275321.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24]
gi|229152590|ref|ZP_04280779.1| Holliday junction resolvase [Bacillus cereus m1550]
gi|33301594|sp|Q812R9|RUVX_BACCR RecName: Full=Putative Holliday junction resolvase
gi|226725486|sp|B7HE21|RUVX_BACC4 RecName: Full=Putative Holliday junction resolvase
gi|29898020|gb|AAP11294.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
gi|218160867|gb|ACK60859.1| conserved hypothetical protein TIGR00250 [Bacillus cereus B4264]
gi|228630851|gb|EEK87491.1| Holliday junction resolvase [Bacillus cereus m1550]
gi|228636556|gb|EEK93022.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24]
gi|228653784|gb|EEL09654.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4]
gi|228671615|gb|EEL26913.1| Holliday junction resolvase [Bacillus cereus Rock1-15]
gi|228711191|gb|EEL63155.1| Holliday junction resolvase [Bacillus cereus F65185]
gi|228836517|gb|EEM81867.1| Holliday junction resolvase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 137
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+AISD A + ++ + + N+ ++GL
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LDR
Sbjct: 121 IDKMAAVVILQGFLDR 136
>gi|317128239|ref|YP_004094521.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
2522]
gi|315473187|gb|ADU29790.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
2522]
Length = 142
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIGL 75
+ +D+GT IG+AISD A + R + Q L I ++++ ++GL
Sbjct: 2 KVLGLDVGTHTIGVAISDAFGWTAQGLETIKRAKEDEEQDFSRLDEIIRNKDVSTIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP +AF + +R + WDERLTTV+A+++L+ +VSRKKR +
Sbjct: 62 PKNMNGTIGPSGELCQAFAEKLKER-TNLKVELWDERLTTVAAEKMLVSADVSRKKRKKV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LDR
Sbjct: 121 IDKMAAVMILQGYLDR 136
>gi|254420883|ref|ZP_05034607.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3]
gi|196187060|gb|EDX82036.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3]
Length = 159
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L + DL + P+ P +DLG K IG+A+SD R A P + + K T A +L
Sbjct: 1 MPVLDLLDLPAACPPDTPWMGLDLGEKTIGVAVSDATRLIASPLELIRKSKFTLEADQLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ ++A +IGLP NM+G+EGPR S RAF N+ +R V FWDERL+T + ++
Sbjct: 61 KLMAHRKVSALVIGLPANMDGTEGPRAQSCRAFARNL-ERLRPVNIAFWDERLSTSAVER 119
Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRIS 153
LI+ ++++RK+R Q VD AAA ILQ LDR+
Sbjct: 120 FLIEDLDLNRKRRAQVVDRTAAAWILQGALDRVR 153
>gi|289423537|ref|ZP_06425338.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
gi|289156039|gb|EFD04703.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
Length = 140
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G IG+A+SD A + R+ + + I +N+ + GLP
Sbjct: 4 GRIMGLDIGNNTIGVAVSDLMGMTAQGITTIKRESKKKDIEAIKDIIKEQNVNLIVSGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ F +I + + FWDERLTTVSA+++LI +VSRK R + +
Sbjct: 64 KNMNGTVGPQAEKVMKFCE-LIKEETKLEVEFWDERLTTVSAEKMLISGDVSRKNRKKVI 122
Query: 137 DSIAAALILQEVLDRISF 154
D +AA LILQ LD F
Sbjct: 123 DKLAAVLILQNYLDFKKF 140
>gi|167040129|ref|YP_001663114.1| Holliday junction resolvase-like protein [Thermoanaerobacter sp.
X514]
gi|256752542|ref|ZP_05493398.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914213|ref|ZP_07131529.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
gi|307724552|ref|YP_003904303.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
gi|226695312|sp|B0K0Q3|RUVX_THEPX RecName: Full=Putative Holliday junction resolvase
gi|166854369|gb|ABY92778.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X514]
gi|256748608|gb|EEU61656.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889148|gb|EFK84294.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
gi|307581613|gb|ADN55012.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
Length = 139
Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G K IG+AISD A + R + + I + I+GLP
Sbjct: 2 RIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
N+NG+ GP+ FV ++ + +P + WDERLTTV A+++LI+ ++SR KR + +
Sbjct: 62 NLNGTLGPQGQKVVRFVEHL-KEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVI 120
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LD
Sbjct: 121 DKLAAVLILQNYLDS 135
>gi|83310687|ref|YP_420951.1| putative Holliday junction resolvase [Magnetospirillum magneticum
AMB-1]
gi|82945528|dbj|BAE50392.1| Putative Holliday junction resolvase [Magnetospirillum magneticum
AMB-1]
Length = 159
Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K TQ A LL
Sbjct: 5 MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL 64
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + + ++GLP+ M+G EGPR S R+F N+ + +P +WDERL+T + +
Sbjct: 65 AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAANLARLR-DMPIAYWDERLSTSAVTR 123
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
L++ + SRK+R + VD +AAA ILQ +LD S
Sbjct: 124 TLLEADSSRKRRAEVVDKMAAAYILQGLLDNRS 156
>gi|212638590|ref|YP_002315110.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1]
gi|212560070|gb|ACJ33125.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1]
Length = 145
Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFI 72
+ I +D GTK +G+A+SD A + + L I + +
Sbjct: 4 RHMRILGLDFGTKTLGVAVSDELGWTAQGIETIRIDEEHGEYGFDRLRQLIEQYAVEEIV 63
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P NMNG+ GPR +T+ F + + +P V WDERL+T++A+++LI +VSRKKR
Sbjct: 64 VGFPKNMNGTIGPRGEATQRFAEQ-VKQTFSLPVVLWDERLSTMAAERMLIAADVSRKKR 122
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA +ILQ LD
Sbjct: 123 KKVIDKMAAVMILQSYLD 140
>gi|47566574|ref|ZP_00237396.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus
G9241]
gi|206969800|ref|ZP_03230754.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134]
gi|228941554|ref|ZP_04104103.1| Holliday junction resolvase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228954671|ref|ZP_04116694.1| Holliday junction resolvase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228960658|ref|ZP_04122303.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228974484|ref|ZP_04135051.1| Holliday junction resolvase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981078|ref|ZP_04141379.1| Holliday junction resolvase [Bacillus thuringiensis Bt407]
gi|228987638|ref|ZP_04147752.1| Holliday junction resolvase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229048094|ref|ZP_04193667.1| Holliday junction resolvase [Bacillus cereus AH676]
gi|229081651|ref|ZP_04214146.1| Holliday junction resolvase [Bacillus cereus Rock4-2]
gi|229180662|ref|ZP_04308002.1| Holliday junction resolvase [Bacillus cereus 172560W]
gi|229192598|ref|ZP_04319559.1| Holliday junction resolvase [Bacillus cereus ATCC 10876]
gi|296504877|ref|YP_003666577.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
BMB171]
gi|47556604|gb|EAL14936.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus
G9241]
gi|206735488|gb|EDZ52656.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134]
gi|228590905|gb|EEK48763.1| Holliday junction resolvase [Bacillus cereus ATCC 10876]
gi|228602807|gb|EEK60288.1| Holliday junction resolvase [Bacillus cereus 172560W]
gi|228701655|gb|EEL54146.1| Holliday junction resolvase [Bacillus cereus Rock4-2]
gi|228723249|gb|EEL74621.1| Holliday junction resolvase [Bacillus cereus AH676]
gi|228772098|gb|EEM20550.1| Holliday junction resolvase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228778619|gb|EEM26885.1| Holliday junction resolvase [Bacillus thuringiensis Bt407]
gi|228785201|gb|EEM33213.1| Holliday junction resolvase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228799022|gb|EEM45994.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228804998|gb|EEM51594.1| Holliday junction resolvase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228818110|gb|EEM64186.1| Holliday junction resolvase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|296325929|gb|ADH08857.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
BMB171]
gi|326942168|gb|AEA18064.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 137
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+AISD A + ++ + + N+ ++GL
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 121 IDKMAAVVILQGFLDS 136
>gi|299535708|ref|ZP_07049029.1| putative Holliday junction resolvase [Lysinibacillus fusiformis
ZC1]
gi|298728908|gb|EFI69462.1| putative Holliday junction resolvase [Lysinibacillus fusiformis
ZC1]
Length = 138
Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K +G+A+SD A + + + + I F++G
Sbjct: 2 RIMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYTITEFVVGF 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSRKKR Q
Sbjct: 62 PKNMNNTVGPRGEASENY-KKLLEEHFSLPVKLWDERLTTMAAERMLIEADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 121 IDKMAAVMILQGYLDSKN 138
>gi|163942136|ref|YP_001647020.1| Holliday junction resolvase-like protein [Bacillus
weihenstephanensis KBAB4]
gi|229013604|ref|ZP_04170735.1| Holliday junction resolvase [Bacillus mycoides DSM 2048]
gi|229032036|ref|ZP_04188019.1| Holliday junction resolvase [Bacillus cereus AH1271]
gi|229062082|ref|ZP_04199407.1| Holliday junction resolvase [Bacillus cereus AH603]
gi|229135209|ref|ZP_04264008.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196]
gi|229169130|ref|ZP_04296845.1| Holliday junction resolvase [Bacillus cereus AH621]
gi|229175060|ref|ZP_04302578.1| Holliday junction resolvase [Bacillus cereus MM3]
gi|226725488|sp|A9VI07|RUVX_BACWK RecName: Full=Putative Holliday junction resolvase
gi|163864333|gb|ABY45392.1| Holliday junction resolvase YqgF [Bacillus weihenstephanensis
KBAB4]
gi|228608428|gb|EEK65732.1| Holliday junction resolvase [Bacillus cereus MM3]
gi|228614358|gb|EEK71468.1| Holliday junction resolvase [Bacillus cereus AH621]
gi|228648251|gb|EEL04287.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196]
gi|228717234|gb|EEL68909.1| Holliday junction resolvase [Bacillus cereus AH603]
gi|228729281|gb|EEL80275.1| Holliday junction resolvase [Bacillus cereus AH1271]
gi|228747663|gb|EEL97535.1| Holliday junction resolvase [Bacillus mycoides DSM 2048]
Length = 137
Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+A+SD A + ++ + + N+ ++GL
Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRN-LLQLEVVMWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 121 IDKMAAVVILQGFLDS 136
>gi|240145916|ref|ZP_04744517.1| putative holliday junction resolvase [Roseburia intestinalis L1-82]
gi|257201981|gb|EEV00266.1| putative holliday junction resolvase [Roseburia intestinalis L1-82]
gi|291535170|emb|CBL08282.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis
M50/1]
Length = 144
Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 4/140 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+A+SD A + R+ K+ QT + + I + ++G
Sbjct: 2 RILGLDFGSKTVGVAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN +EG R T+ F M++R+ + + WDERLTTVSA + +++ + R+ R +
Sbjct: 62 YPKNMNNTEGERCEKTKEF-QEMLERRTGLEVILWDERLTTVSADKHMMESGIRREDRKK 120
Query: 135 KVDSIAAALILQEVLDRISF 154
VD IAA ILQ LD S
Sbjct: 121 YVDEIAAVFILQGYLDYRSM 140
>gi|325662158|ref|ZP_08150776.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA]
gi|325471607|gb|EGC74827.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA]
Length = 148
Score = 183 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLP 76
+D G+K +G+AISDP A + RK K+ +T + + + + ++G P
Sbjct: 1 MGLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLGFP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + G R + F M++R+ +P WDERLTTV A++ LI+ NV R+ R + V
Sbjct: 61 KNMNNTVGDRAEKSLEF-KEMLERRTALPVTMWDERLTTVEAERTLIENNVRREDRKKYV 119
Query: 137 DSIAAALILQEVLDRISFLESS 158
D IAA ILQ LD + F + S
Sbjct: 120 DKIAAVFILQGYLDSVYFRQKS 141
>gi|331269728|ref|YP_004396220.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925]
gi|329126278|gb|AEB76223.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925]
Length = 135
Score = 183 bits (467), Expect = 5e-45, Method: Composition-based stats.
Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G K IG+A+SDP A + RK++ + E+ I I GLP
Sbjct: 2 RILGLDIGNKTIGVAVSDPLGFTAQGITTIHRKELEKDIEEVGKICHEYKIELIISGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ G + F + D+ + +P WDERLTTV+A + +++ N+SR KR + VD
Sbjct: 62 NMNGTIGEQGEKVLEFCDVLKDK-LDIPIKMWDERLTTVAAHRAMLEANLSRAKRKKIVD 120
Query: 138 SIAAALILQEVLDRI 152
IAA ILQ LD I
Sbjct: 121 KIAATYILQGYLDSI 135
>gi|319940102|ref|ZP_08014456.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus
1_2_62CV]
gi|319810816|gb|EFW07143.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus
1_2_62CV]
Length = 139
Score = 183 bits (467), Expect = 5e-45, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+A+SDP A + +K L + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLSELVKEYKVNKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ I++ ++P + DERLTTV+A+++LI+ +VSRKKR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGAK-IEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|160895347|ref|ZP_02076118.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
gi|156863040|gb|EDO56471.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
Length = 165
Score = 183 bits (467), Expect = 5e-45, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 79/143 (55%), Gaps = 4/143 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAF 71
N I +D GTK +G+A+SD A P + RK K+ QT + S I
Sbjct: 19 KNMRIIGLDYGTKTVGVAVSDALMITAQPLETIERKSANKLRQTLARIESIIEEYQAERI 78
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++G P NMN + G R +T F ++ +R+ + + WDERL+TV A++IL+D V R+
Sbjct: 79 VLGYPKNMNNTIGERAEATEQFKEDL-ERRTGLEVILWDERLSTVEAERILMDTGVRREN 137
Query: 132 RIQKVDSIAAALILQEVLDRISF 154
R Q VD +AAA+ILQ LD +
Sbjct: 138 RKQYVDKMAAAVILQNYLDSQAH 160
>gi|307243223|ref|ZP_07525394.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis
DSM 17678]
gi|306493351|gb|EFM65333.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis
DSM 17678]
Length = 138
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D+G IG+A+SD A + R L I + + GL
Sbjct: 3 SGRIMGLDIGDNTIGVAVSDLMGMTAQGITTIKRSSKKNDIEALKKIIEERQVNLIVSGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP+ F ++I ++ + FWDERLTTVSA+++LI+ +V RK R +
Sbjct: 63 PKNMNGTIGPQAEKVIKFC-DLIKEELGMEIKFWDERLTTVSAEKMLIEGDVRRKNRKKV 121
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA LILQ LD I
Sbjct: 122 IDKLAAVLILQGYLDSI 138
>gi|295690146|ref|YP_003593839.1| Holliday junction resolvase YqgF [Caulobacter segnis ATCC 21756]
gi|295432049|gb|ADG11221.1| Holliday junction resolvase YqgF [Caulobacter segnis ATCC 21756]
Length = 156
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L IED +L P+ +D G K IG+A+SD R A P + + K ++ A L
Sbjct: 1 MPVLDIEDFAAALPQYAPVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEALF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +IGLP+NM+G+EG R S RA N++ K +P FWDERL+T + +
Sbjct: 61 KLMDSRGAVGIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR 120
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+LI + +V+RK+R + VD +AA ILQ L+R+ L
Sbjct: 121 VLIEEHDVNRKRRAEVVDKMAAGWILQGALERLRGL 156
>gi|197104788|ref|YP_002130165.1| putative Holliday junction resolvase [Phenylobacterium zucineum
HLK1]
gi|226731635|sp|B4R966|RUVX_PHEZH RecName: Full=Putative Holliday junction resolvase
gi|196478208|gb|ACG77736.1| putative Holliday junction resolvase [Phenylobacterium zucineum
HLK1]
Length = 156
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ + DL PN P+ +DLG K IG+A+SD R A P + + K T A L
Sbjct: 1 MAVVDLIDLPAIAPPNTPLVGLDLGEKTIGVAVSDATRMVASPLGLIRKTKFTDDAKALF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLP+NM+G+EG R S RAF N++ + +P FWDER++T++ +
Sbjct: 61 KLMESRRASGIVIGLPVNMDGTEGTRCQSNRAFARNLLRLREDLPIAFWDERMSTMAVNR 120
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+L+ + +++R +R VD +AAA ILQ LDR+ L
Sbjct: 121 MLVGEADMTRARRADVVDKMAAAWILQGALDRLRNL 156
>gi|226324641|ref|ZP_03800159.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758]
gi|225207089|gb|EEG89443.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758]
Length = 143
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 53/140 (37%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D GTK +G+A+SDP A + RK K+ +T + S T + F+IG
Sbjct: 3 RIMGLDYGTKTVGVAVSDPLGITAQAVETVTRKDENKLRKTLARIESLATEYGVEKFVIG 62
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +MN G R F M+ R+ + V WDERLTTV A++ L++ V R+ R Q
Sbjct: 63 FPKHMNNDIGERAEKALEFGE-MLKRRTGIEIVMWDERLTTVEAERTLMESGVRRENRKQ 121
Query: 135 KVDSIAAALILQEVLDRISF 154
VD IAA ILQ LD +
Sbjct: 122 YVDQIAAVFILQGYLDSLGM 141
>gi|291549894|emb|CBL26156.1| conserved hypothetical protein TIGR00250 [Ruminococcus torques
L2-14]
Length = 145
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
+ +D GTK +G+AISDP A + RK K+ +T + I + ++G
Sbjct: 2 RVMGLDYGTKTVGVAISDPLGLTAQGIETIQRKEENKLRRTCARIEELIKEYQVEKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +MN G R + F +M+ R+ + + WDERLTTV+A+Q LI+ V R+ R Q
Sbjct: 62 FPKHMNNDIGERAQKSLEF-RDMLVRRTGLEVIMWDERLTTVAAEQTLIESGVRRENRKQ 120
Query: 135 KVDSIAAALILQEVLDRISFLESSK 159
VD IAA ILQ LD I ++++
Sbjct: 121 YVDKIAAVFILQGYLDSIYMQKTAE 145
>gi|323483777|ref|ZP_08089157.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
WAL-14163]
gi|323692750|ref|ZP_08106978.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
WAL-14673]
gi|323402968|gb|EGA95286.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
WAL-14163]
gi|323503192|gb|EGB19026.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
WAL-14673]
Length = 163
Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 6/156 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTAL 57
M+I + ++ +K + +D G+K G+A+SDP A + R+ K+ +T
Sbjct: 1 MAICQL--VLLWVKQLMRVLGLDFGSKTTGVAVSDPLGFTAQGLETITREDENKLRRTCA 58
Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
+ I I ++G P NMN + G RV T AF M++R+ + + WDERLTT +
Sbjct: 59 RIEELIREYQIETIVLGYPKNMNNTSGERVEKTLAF-KEMLERRTGLSVILWDERLTTTA 117
Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
A+QILI+ V R+ R +D +AA+LILQ LD ++
Sbjct: 118 AEQILIESGVRRENRKAVIDKVAASLILQGYLDSLA 153
>gi|206975936|ref|ZP_03236846.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97]
gi|217961876|ref|YP_002340446.1| Holliday junction resolvase-like protein [Bacillus cereus AH187]
gi|222097829|ref|YP_002531886.1| holliday junction resolvase-like protein [Bacillus cereus Q1]
gi|229141123|ref|ZP_04269665.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26]
gi|226725487|sp|B7HQE4|RUVX_BACC7 RecName: Full=Putative Holliday junction resolvase
gi|254767497|sp|B9IYF1|RUVX_BACCQ RecName: Full=Putative Holliday junction resolvase
gi|206745688|gb|EDZ57085.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97]
gi|217063507|gb|ACJ77757.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH187]
gi|221241887|gb|ACM14597.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|228642401|gb|EEK98690.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26]
Length = 137
Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+AISD A + ++ + + ++ ++GL
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LDR
Sbjct: 121 IDKMAAVVILQGFLDR 136
>gi|328474865|gb|EGF45665.1| Holliday junction resolvase-like protein [Listeria monocytogenes
220]
gi|332311944|gb|EGJ25039.1| Putative Holliday junction resolvase [Listeria monocytogenes str.
Scott A]
Length = 135
Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + + + ++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 61 NMNNTIGPRAESSKIYAEVL-ESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVID 119
Query: 138 SIAAALILQEVLDRIS 153
+AA +ILQ LD +
Sbjct: 120 KLAAVMILQSYLDTTN 135
>gi|323136211|ref|ZP_08071293.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242]
gi|322398285|gb|EFY00805.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242]
Length = 157
Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
IE++ + L + +DLGTK IGLA+SD RR A P + R K +Q A LL
Sbjct: 7 PIEEVARVLPAKGRLMGLDLGTKTIGLALSDVERRLASPLDTIKRVKFSQDAGALLQRAQ 66
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
++ A + GLPLNM+G+ GPR +TRAF+ N+ + +PFVFWDERL+T + + LI
Sbjct: 67 DFDVQALVFGLPLNMDGTAGPRAQATRAFMRNL-RKLTPIPFVFWDERLSTAAVTRELIA 125
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ SR KR + VD +AAA ILQ LDR+S L
Sbjct: 126 QDASRAKRAEVVDRMAAAYILQGALDRLSRL 156
>gi|154247845|ref|YP_001418803.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2]
gi|154161930|gb|ABS69146.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2]
Length = 176
Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats.
Identities = 61/148 (41%), Positives = 82/148 (55%), Gaps = 1/148 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
I + D+ L P + +DLGTK IG+A DP RR A + R K T A LL+
Sbjct: 9 PIGPLADIAPLLPPRGALLGLDLGTKTIGVASCDPDRRVATVVETVQRTKFTADAQRLLA 68
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
F++GLPLNM+ SEGPR ++RAF N+ R +P WDERL+T + ++
Sbjct: 69 LAAERRAVGFVLGLPLNMDASEGPRAQASRAFARNLA-RLTALPIALWDERLSTAAVERA 127
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVL 149
LI +VSR +R VD AAA IL+ L
Sbjct: 128 LISADVSRARRAAVVDQHAAAFILEGAL 155
>gi|225568728|ref|ZP_03777753.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM
15053]
gi|225162227|gb|EEG74846.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM
15053]
Length = 145
Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G K +G+A+SDP A + RK K+ QT + I + ++G
Sbjct: 4 RIMGLDYGEKTVGVAVSDPLGLTAQGIETIFRKEENKLRQTCARIEELIREYEVERIVLG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +MN G R + F M+ R+ + V WDERLTTV A++ LI+ V R+ R +
Sbjct: 64 LPKHMNNDIGDRAEQSLEFGE-MLKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKK 122
Query: 135 KVDSIAAALILQEVLDRI 152
+D IAA ILQ LD I
Sbjct: 123 YIDKIAAVFILQGYLDSI 140
>gi|225375409|ref|ZP_03752630.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM
16841]
gi|225212745|gb|EEG95099.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM
16841]
Length = 145
Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+A+SD A + R+ K+ Q+ + I N+ ++G
Sbjct: 2 RILGLDYGSKTVGVAVSDELLFTAQGLEIVRRQSPNKLRQSLARIEEIIKEYNVERIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN +EG R T+ F M++R+ + + WDERLTTVSA + +++ + R+ R +
Sbjct: 62 YPKNMNNTEGERCEKTKEF-KEMLERRTGLNVILWDERLTTVSADKHMMESGIRREDRKK 120
Query: 135 KVDSIAAALILQEVLDRISFLESSK 159
VD IAA ILQ LD ++ K
Sbjct: 121 FVDEIAAVFILQGYLDYLAMHPEEK 145
>gi|294853606|ref|ZP_06794278.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026]
gi|294819261|gb|EFG36261.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026]
Length = 162
Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+N +G+ GPRV +TRAFV M + FVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNTDGTAGPRVQATRAFVRTM-QPLTDLSFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR ++DS AAA ILQ LDR+ + +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157
>gi|229198513|ref|ZP_04325217.1| Holliday junction resolvase [Bacillus cereus m1293]
gi|228585016|gb|EEK43130.1| Holliday junction resolvase [Bacillus cereus m1293]
Length = 137
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+AISD A + ++ + + ++ ++GL
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYDVDKIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 121 IDKMAAVVILQGFLDS 136
>gi|150015990|ref|YP_001308244.1| Holliday junction resolvase-like protein [Clostridium beijerinckii
NCIMB 8052]
gi|189046092|sp|A6LSF8|RUVX_CLOB8 RecName: Full=Putative Holliday junction resolvase
gi|149902455|gb|ABR33288.1| Holliday junction resolvase YqgF [Clostridium beijerinckii NCIMB
8052]
Length = 138
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +DLG+K IG+A+SDP A + R + E+ F + +IGLP
Sbjct: 2 RILGLDLGSKTIGVAVSDPLGFTAQGLTTVRRTNKEKDIAEIKKFCDEYDAKVIVIGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP AF +I+ ++ V FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTIGPSGEIAMAFG-KVIEEELNVEVKFWDERLTTVAAHKAMLEADLSRNKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
+A+ ILQ LD IS
Sbjct: 121 KVASTYILQGYLDMIS 136
>gi|315221498|ref|ZP_07863418.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus
F0211]
gi|315189332|gb|EFU23027.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus
F0211]
Length = 139
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+A+SDP A + +K L + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLNGLVQEYKVDKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ I++ ++P + DERLTTV+A+++LI+ +VSRKKR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGTK-IEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|217964351|ref|YP_002350029.1| hypothetical protein LMHCC_1067 [Listeria monocytogenes HCC23]
gi|284801892|ref|YP_003413757.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578]
gi|284995034|ref|YP_003416802.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923]
gi|217333621|gb|ACK39415.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
gi|284057454|gb|ADB68395.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578]
gi|284060501|gb|ADB71440.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923]
gi|307571083|emb|CAR84262.1| holliday junction resolvase, putative [Listeria monocytogenes L99]
Length = 135
Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + + + ++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 61 NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVID 119
Query: 138 SIAAALILQEVLDRIS 153
+AA +ILQ LD +
Sbjct: 120 KLAAVMILQSYLDTTN 135
>gi|218899555|ref|YP_002447966.1| hypothetical protein TIGR00250 [Bacillus cereus G9842]
gi|228902914|ref|ZP_04067055.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222]
gi|228910222|ref|ZP_04074040.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200]
gi|228967461|ref|ZP_04128490.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|229098858|ref|ZP_04229794.1| Holliday junction resolvase [Bacillus cereus Rock3-29]
gi|229105020|ref|ZP_04235674.1| Holliday junction resolvase [Bacillus cereus Rock3-28]
gi|226725485|sp|B7IYP0|RUVX_BACC2 RecName: Full=Putative Holliday junction resolvase
gi|218541329|gb|ACK93723.1| conserved hypothetical protein TIGR00250 [Bacillus cereus G9842]
gi|228678397|gb|EEL32620.1| Holliday junction resolvase [Bacillus cereus Rock3-28]
gi|228684531|gb|EEL38473.1| Holliday junction resolvase [Bacillus cereus Rock3-29]
gi|228792238|gb|EEM39811.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228849386|gb|EEM94222.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200]
gi|228856698|gb|EEN01217.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222]
Length = 137
Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+A+SD A + ++ + + N+ ++GL
Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 121 IDKMAAVVILQGFLDS 136
>gi|75676194|ref|YP_318615.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255]
gi|146325584|sp|Q3SR28|RUVX_NITWN RecName: Full=Putative Holliday junction resolvase
gi|74421064|gb|ABA05263.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255]
Length = 163
Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
S+L + + + +DLGTK IG+A+SDP RR A + RK T A LL+
Sbjct: 4 SVLPLVEAAAHWPARGALVGLDLGTKTIGVAVSDPDRRLATGVETIRRKTFTADAARLLA 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
FI+GLP+NM+GSEGPR STRAF N+ R WDERL+T + ++
Sbjct: 64 IAGERRAEGFILGLPINMDGSEGPRAQSTRAFARNLA-RLTDFAIGLWDERLSTAAVERE 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
LI +++SR +R + +D AA ILQ LDR++ + G
Sbjct: 123 LIGLDMSRARRAKVIDEHAAIFILQGALDRLATQRRTSG 161
>gi|187778852|ref|ZP_02995325.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC
15579]
gi|187772477|gb|EDU36279.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC
15579]
Length = 137
Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G + IG+A+SDP A + RK E+ + + GLP
Sbjct: 2 RILGLDIGDRTIGVALSDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ F ++I V + WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTLGPQSEKVLEFC-DLIKEHVNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA ILQ LD +S
Sbjct: 121 KMAATYILQGYLDSLS 136
>gi|238926881|ref|ZP_04658641.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
flueggei ATCC 43531]
gi|238885413|gb|EEQ49051.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
flueggei ATCC 43531]
Length = 143
Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 72/139 (51%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ S+DLG IG+A+SD A + R + L + + A + GL
Sbjct: 1 MKRYMSLDLGDATIGIAVSDLLGLTAQGVETVRRTNIEADLAHLGQLMQEYEVDALVAGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R RAF+ + + +WDERL+TV+A + LI +VSRKKR +
Sbjct: 61 PKHMNGDEGERCSIVRAFMAEVEEHFPGTEVHYWDERLSTVAASRALIAGDVSRKKRRKV 120
Query: 136 VDSIAAALILQEVLDRISF 154
+D +AA ILQ LDR +
Sbjct: 121 IDKMAAVYILQGFLDRQNM 139
>gi|182678862|ref|YP_001833008.1| Holliday junction resolvase-like protein [Beijerinckia indica
subsp. indica ATCC 9039]
gi|226725489|sp|B2IEC1|RUVX_BEII9 RecName: Full=Putative Holliday junction resolvase
gi|182634745|gb|ACB95519.1| Holliday junction resolvase YqgF [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 165
Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
+L + +L L P Q + IDLGTK IGL++SD RR A P + R K T+ A LL+
Sbjct: 5 VLPLVELKPLLGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKDAERLLAL 64
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
++AAF+IGLPLNM+GS GPRV +T AFV ++ PF +WDERL+T + + L
Sbjct: 65 ADQFDVAAFVIGLPLNMDGSAGPRVQATEAFVRSLSG-LTSRPFCYWDERLSTAAVTRDL 123
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
I + SR KR VD +AAA ILQ LDR++++ +
Sbjct: 124 IAQDASRAKRAAVVDKLAAAFILQGALDRLAWVHETA 160
>gi|30264456|ref|NP_846833.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Ames]
gi|42783515|ref|NP_980762.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC
10987]
gi|47529912|ref|YP_021261.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
'Ames Ancestor']
gi|49187278|ref|YP_030530.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Sterne]
gi|49478623|ref|YP_038437.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52141120|ref|YP_085709.1| Holliday junction resolvase-like protein [Bacillus cereus E33L]
gi|65321754|ref|ZP_00394713.1| COG0816: Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Bacillus anthracis str. A2012]
gi|118479548|ref|YP_896699.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
str. Al Hakam]
gi|165872754|ref|ZP_02217382.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0488]
gi|167638500|ref|ZP_02396776.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0193]
gi|177653215|ref|ZP_02935467.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0174]
gi|190566960|ref|ZP_03019876.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis
Tsiankovskii-I]
gi|196034479|ref|ZP_03101888.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W]
gi|196039375|ref|ZP_03106681.1| conserved hypothetical protein TIGR00250 [Bacillus cereus
NVH0597-99]
gi|196044968|ref|ZP_03112202.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108]
gi|218905581|ref|YP_002453415.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820]
gi|225866368|ref|YP_002751746.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102]
gi|227817165|ref|YP_002817174.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
CDC 684]
gi|228917020|ref|ZP_04080580.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228929431|ref|ZP_04092452.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935707|ref|ZP_04098520.1| Holliday junction resolvase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228948100|ref|ZP_04110384.1| Holliday junction resolvase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229093457|ref|ZP_04224560.1| Holliday junction resolvase [Bacillus cereus Rock3-42]
gi|229123927|ref|ZP_04253119.1| Holliday junction resolvase [Bacillus cereus 95/8201]
gi|229158002|ref|ZP_04286073.1| Holliday junction resolvase [Bacillus cereus ATCC 4342]
gi|229186626|ref|ZP_04313787.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1]
gi|229603692|ref|YP_002868674.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0248]
gi|254684142|ref|ZP_05148002.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
CNEVA-9066]
gi|254724687|ref|ZP_05186470.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
A1055]
gi|254736489|ref|ZP_05194195.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Western North America USA6153]
gi|254741527|ref|ZP_05199214.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Kruger B]
gi|254757706|ref|ZP_05209733.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Australia 94]
gi|300119207|ref|ZP_07056904.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1]
gi|301055895|ref|YP_003794106.1| holliday junction resolvase-like protein [Bacillus anthracis CI]
gi|33301603|sp|Q81LK2|RUVX_BACAN RecName: Full=Putative Holliday junction resolvase
gi|62900956|sp|Q634F8|RUVX_BACCZ RecName: Full=Putative Holliday junction resolvase
gi|62900978|sp|Q6HDD9|RUVX_BACHK RecName: Full=Putative Holliday junction resolvase
gi|62900993|sp|Q730E7|RUVX_BACC1 RecName: Full=Putative Holliday junction resolvase
gi|167012692|sp|A0RIZ9|RUVX_BACAH RecName: Full=Putative Holliday junction resolvase
gi|226725484|sp|B7JPX2|RUVX_BACC0 RecName: Full=Putative Holliday junction resolvase
gi|254767494|sp|C3P975|RUVX_BACAA RecName: Full=Putative Holliday junction resolvase
gi|254767495|sp|C3L5Z2|RUVX_BACAC RecName: Full=Putative Holliday junction resolvase
gi|254767496|sp|C1EST1|RUVX_BACC3 RecName: Full=Putative Holliday junction resolvase
gi|30259114|gb|AAP28319.1| RNAse H-fold protein YqgF [Bacillus anthracis str. Ames]
gi|42739444|gb|AAS43370.1| conserved hypothetical protein TIGR00250 [Bacillus cereus ATCC
10987]
gi|47505060|gb|AAT33736.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
'Ames Ancestor']
gi|49181205|gb|AAT56581.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
Sterne]
gi|49330179|gb|AAT60825.1| conserved hypothetical protein, possible Holliday junction
resolvase [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51974589|gb|AAU16139.1| conserved hypothetical protein; possible Holliday junction
resolvase [Bacillus cereus E33L]
gi|118418773|gb|ABK87192.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|164711530|gb|EDR17079.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0488]
gi|167513348|gb|EDR88718.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0193]
gi|172081497|gb|EDT66569.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0174]
gi|190561951|gb|EDV15920.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis
Tsiankovskii-I]
gi|195993021|gb|EDX56980.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W]
gi|196024456|gb|EDX63129.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108]
gi|196030002|gb|EDX68603.1| conserved hypothetical protein TIGR00250 [Bacillus cereus
NVH0597-99]
gi|218535867|gb|ACK88265.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820]
gi|225789273|gb|ACO29490.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102]
gi|227007492|gb|ACP17235.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
CDC 684]
gi|228596885|gb|EEK54544.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1]
gi|228625455|gb|EEK82211.1| Holliday junction resolvase [Bacillus cereus ATCC 4342]
gi|228659229|gb|EEL14877.1| Holliday junction resolvase [Bacillus cereus 95/8201]
gi|228689928|gb|EEL43732.1| Holliday junction resolvase [Bacillus cereus Rock3-42]
gi|228811458|gb|EEM57795.1| Holliday junction resolvase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228823945|gb|EEM69764.1| Holliday junction resolvase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830219|gb|EEM75835.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228842627|gb|EEM87715.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229268100|gb|ACQ49737.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0248]
gi|298723427|gb|EFI64172.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1]
gi|300378064|gb|ADK06968.1| holliday junction resolvase-like protein [Bacillus cereus biovar
anthracis str. CI]
gi|324328290|gb|ADY23550.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 137
Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+AISD A + ++ + + ++ ++GL
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 121 IDKMAAVVILQGFLDS 136
>gi|296445897|ref|ZP_06887848.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b]
gi|296256565|gb|EFH03641.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b]
Length = 160
Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 68/153 (44%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
+E+L L + +D+GTK IGLA+SD RR A P + R K T A L + +
Sbjct: 7 TVEELAALLPAKGRLMGLDVGTKTIGLALSDVERRLASPLETIRRGKFTSDAERLGALVA 66
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
+IAA I+GLPLNM+GSEGPR +TRAF+ N+ + + + FWDERL+T + + L+
Sbjct: 67 QFDIAALIVGLPLNMDGSEGPRAQATRAFMRNL-GARFALRYAFWDERLSTAAVTRELLA 125
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+ SR KR VD +AAA ILQ LDR+ L S
Sbjct: 126 QDASRAKRAAVVDRMAAAYILQGALDRLRRLAS 158
>gi|85716409|ref|ZP_01047381.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A]
gi|85696766|gb|EAQ34652.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A]
Length = 166
Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 90/159 (56%), Gaps = 1/159 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
+L + + + +DLGT+ IG+A+SDP RR A + RK T A LL+
Sbjct: 4 PVLPLIEAAAHWPERGALVGLDLGTRTIGVAVSDPDRRLATGVETIRRKAFTADAARLLA 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ FI+GLP+NM+GSEGPR STRAF N+ R + WDERL+T + ++
Sbjct: 64 IAGERHAKGFILGLPINMDGSEGPRAQSTRAFARNLA-RLTDLAIGLWDERLSTAAVERE 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
LI +++SR +R + +D AA ILQ LDR++ S G
Sbjct: 123 LIGLDMSRARRARVIDEHAAIFILQGALDRLAAQRRSSG 161
>gi|251798321|ref|YP_003013052.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2]
gi|247545947|gb|ACT02966.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2]
Length = 138
Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+D G + IG+A+SD A + +++ + + + ++GLP
Sbjct: 2 RTMGLDYGDRNIGVAVSDAFGWTAQGLETVHKRRDGGEMDRIAELVKEHEVTEIVVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GPR + AF + + + +P WDERLTTVSA++ L++ +VSRKKR +D
Sbjct: 62 NMNNTIGPRGEISMAFAEQL-QQTLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVID 120
Query: 138 SIAAALILQEVLDR 151
+AA LILQ LD
Sbjct: 121 KMAATLILQNYLDS 134
>gi|291539698|emb|CBL12809.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis
XB6B4]
Length = 144
Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 4/140 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +GLA+SD A + R+ K+ QT + + I + ++G
Sbjct: 2 RILGLDFGSKTVGLAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN +EG R T+ F M++R+ + + WDERLTTVSA + +++ + R+ R +
Sbjct: 62 YPKNMNNTEGERCEKTKEF-KEMLERRTGLEVILWDERLTTVSADKHMMESGIRREDRKK 120
Query: 135 KVDSIAAALILQEVLDRISF 154
VD IAA ILQ LD S
Sbjct: 121 YVDEIAAVFILQGYLDYRSM 140
>gi|329889392|ref|ZP_08267735.1| conserved hypothetical UPF0081 family protein [Brevundimonas
diminuta ATCC 11568]
gi|328844693|gb|EGF94257.1| conserved hypothetical UPF0081 family protein [Brevundimonas
diminuta ATCC 11568]
Length = 154
Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 63/154 (40%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L + +L + PN P +DLG IG+++SD GR A P + + K +Q A +L
Sbjct: 1 MPVLDLSELPAACPPNTPWLGLDLGENTIGVSVSDTGRIIASPLELIRKTKFSQDAEQLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ ++A +IGLPLNM+G+EGPR S RAF N+ +R V F DERL+T + ++
Sbjct: 61 RIMDGRKVSALVIGLPLNMDGTEGPRAQSCRAFARNL-ERFRPVNVAFQDERLSTTAVER 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
LI +++++RK+R VD AAA ILQ LDR+
Sbjct: 120 FLIDELDLTRKRRADVVDRTAAAWILQGALDRLR 153
>gi|229163335|ref|ZP_04291287.1| Holliday junction resolvase [Bacillus cereus R309803]
gi|228620116|gb|EEK76990.1| Holliday junction resolvase [Bacillus cereus R309803]
Length = 137
Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+A+SD A + ++ + + N+ ++GL
Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 121 IDKMAAVVILQGFLDS 136
>gi|300854403|ref|YP_003779387.1| putative Holliday junction resolvase [Clostridium ljungdahlii DSM
13528]
gi|300434518|gb|ADK14285.1| predicted Holliday junction resolvase [Clostridium ljungdahlii DSM
13528]
Length = 137
Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G + IG+A+SDP A + RK + EL S + + GLP
Sbjct: 2 RILGLDIGDRTIGVALSDPLGITAQGITTVRRKNQEKDIEELKSICEKYGVECIVSGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ G + +F +I++ + VP WDERLTTV+A + +I+ ++SR KR + VD
Sbjct: 62 NMNGTLGLQSEKVLSFC-KVIEQSIKVPIKMWDERLTTVAAHRAMIEGDLSRAKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA ILQ LD IS
Sbjct: 121 KMAAIYILQGYLDSIS 136
>gi|28210758|ref|NP_781702.1| Holliday junction resolvase-like protein [Clostridium tetani E88]
gi|32130019|sp|Q896F1|RUVX_CLOTE RecName: Full=Putative Holliday junction resolvase
gi|28203196|gb|AAO35639.1| DNA integration/recombination protein [Clostridium tetani E88]
Length = 138
Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G + IG+AISDP A + R + E+ + + GLP
Sbjct: 2 RILGLDVGDRTIGVAISDPLGWTAQGVKTIKRSNLKNDIKEIEDICNEYKVDKIVSGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ F +++ +++ + WDERLTTV+A + +I+ ++SR KR + VD
Sbjct: 62 NMNGTLGPQSEKVTEFC-DILKKELEKEIIMWDERLTTVAAHKAMIEGDLSRAKRKKIVD 120
Query: 138 SIAAALILQEVLDRI 152
IAA ILQ LD +
Sbjct: 121 KIAAIYILQGYLDSV 135
>gi|323142335|ref|ZP_08077167.1| RNAse H domain protein, YqgF family [Phascolarctobacterium sp. YIT
12067]
gi|322413219|gb|EFY04106.1| RNAse H domain protein, YqgF family [Phascolarctobacterium sp. YIT
12067]
Length = 140
Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 74/135 (54%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+GT+ IG+A+SD A+ + R + + I + ++G P NM
Sbjct: 4 MSLDVGTRTIGIAVSDLLGMIANGVETIHRTTEERDYARIAELIAEHEVDTLVVGYPKNM 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+ G R + A + V V WDERL+TV+A+++L+D ++ RKKR + +D +
Sbjct: 64 NGTIGERAQACEAMAEKLRTMFPKVQVVLWDERLSTVAAEKVLVDADLRRKKRKKVIDMM 123
Query: 140 AAALILQEVLDRISF 154
AA +ILQ LD SF
Sbjct: 124 AAVVILQNYLDSKSF 138
>gi|323490024|ref|ZP_08095245.1| Holliday junction resolvase-like protein [Planococcus donghaensis
MPA1U2]
gi|323396320|gb|EGA89145.1| Holliday junction resolvase-like protein [Planococcus donghaensis
MPA1U2]
Length = 138
Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K IG+AISDP A + + + L I + ++G
Sbjct: 2 RIIGLDVGSKTIGVAISDPMGWTAQGIETIKINEAIEEFGMERLGELIKQYEVTEAVVGY 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN S GPR ++ F ++ +P V WDERLTT +A+++LI +VSRK R +
Sbjct: 62 PKNMNNSIGPRAEASEKFAA-LLKEAYSIPVVLWDERLTTSAAEKMLISADVSRKNRKKV 120
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 121 IDKMAAVMILQGYLD 135
>gi|134298642|ref|YP_001112138.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1]
gi|172044263|sp|A4J2L0|RUVX_DESRM RecName: Full=Putative Holliday junction resolvase
gi|134051342|gb|ABO49313.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1]
Length = 137
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 49/134 (36%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G K IG+A+SDP A + R + + L I+ ++ ++G+P
Sbjct: 2 RIMGLDVGDKTIGVALSDPLGWTAQGLEVIRRDTIEKDMNRLAQIISEYSVERILVGMPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ G + AF+ + K+ +P WDERL+TV+A+++LI +VSR KR + +D
Sbjct: 62 NMNGTVGSQGEKVLAFIEK-VKEKIDLPIKTWDERLSTVAAEKMLIQADVSRGKRKKVID 120
Query: 138 SIAAALILQEVLDR 151
+AAA+ILQ LD
Sbjct: 121 KMAAAVILQGYLDS 134
>gi|255282413|ref|ZP_05346968.1| putative holliday junction resolvase [Bryantella formatexigens DSM
14469]
gi|255266997|gb|EET60202.1| putative holliday junction resolvase [Bryantella formatexigens DSM
14469]
Length = 161
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 4/140 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+AISD A + R K+ QT + + I ++ ++G
Sbjct: 8 RIMGLDFGSKTVGVAISDELLITAQGIEIIRRTSENKLRQTCARIETLIGEYHVGRIVLG 67
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R + AF M++R+ +P V WDERLTTV A + L++ V R+KR
Sbjct: 68 FPKNMNNTIGERAEKSLAF-KEMLERRTSLPVVMWDERLTTVEADRTLMEGGVRREKRKD 126
Query: 135 KVDSIAAALILQEVLDRISF 154
VD +AA ILQ LD ++
Sbjct: 127 YVDKLAAVYILQGYLDYLAM 146
>gi|289434782|ref|YP_003464654.1| holliday junction resolvase, putative [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289171026|emb|CBH27568.1| holliday junction resolvase, putative [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 135
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + + + ++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 61 NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEVID 119
Query: 138 SIAAALILQEVLDRIS 153
+AA +ILQ LD +
Sbjct: 120 KLAAVMILQSYLDTTN 135
>gi|229019608|ref|ZP_04176421.1| Holliday junction resolvase [Bacillus cereus AH1273]
gi|229025846|ref|ZP_04182244.1| Holliday junction resolvase [Bacillus cereus AH1272]
gi|228735457|gb|EEL86054.1| Holliday junction resolvase [Bacillus cereus AH1272]
gi|228741688|gb|EEL91875.1| Holliday junction resolvase [Bacillus cereus AH1273]
Length = 137
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+A+SD A + ++ + + + ++GL
Sbjct: 2 RILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYGVDKIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 62 PKNMNGTIGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 121 IDKMAAVVILQGFLDS 136
>gi|148380517|ref|YP_001255058.1| hypothetical protein CBO2562 [Clostridium botulinum A str. ATCC
3502]
gi|153933531|ref|YP_001384804.1| Holliday junction resolvase-like protein [Clostridium botulinum A
str. ATCC 19397]
gi|153935898|ref|YP_001388274.1| Holliday junction resolvase-like protein [Clostridium botulinum A
str. Hall]
gi|153940927|ref|YP_001391859.1| Holliday junction resolvase-like protein [Clostridium botulinum F
str. Langeland]
gi|168180549|ref|ZP_02615213.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum
NCTC 2916]
gi|168182640|ref|ZP_02617304.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf]
gi|170757368|ref|YP_001782177.1| Holliday junction resolvase-like protein [Clostridium botulinum B1
str. Okra]
gi|170760496|ref|YP_001787880.1| Holliday junction resolvase-like protein [Clostridium botulinum A3
str. Loch Maree]
gi|226949917|ref|YP_002805008.1| hypothetical protein TIGR00250 [Clostridium botulinum A2 str.
Kyoto]
gi|237796000|ref|YP_002863552.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4
str. 657]
gi|167012712|sp|A7FWJ3|RUVX_CLOB1 RecName: Full=Putative Holliday junction resolvase
gi|167012713|sp|A5I4Z3|RUVX_CLOBH RecName: Full=Putative Holliday junction resolvase
gi|167012714|sp|A7GGE9|RUVX_CLOBL RecName: Full=Putative Holliday junction resolvase
gi|226725504|sp|B1IJG5|RUVX_CLOBK RecName: Full=Putative Holliday junction resolvase
gi|226725505|sp|B1KXB5|RUVX_CLOBM RecName: Full=Putative Holliday junction resolvase
gi|254767507|sp|C1FTB8|RUVX_CLOBJ RecName: Full=Putative Holliday junction resolvase
gi|259495699|sp|C3L148|RUVX_CLOB6 RecName: Full=Putative Holliday junction resolvase
gi|148290001|emb|CAL84120.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152929575|gb|ABS35075.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A
str. ATCC 19397]
gi|152931812|gb|ABS37311.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A
str. Hall]
gi|152936823|gb|ABS42321.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F
str. Langeland]
gi|169122580|gb|ACA46416.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum B1
str. Okra]
gi|169407485|gb|ACA55896.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A3
str. Loch Maree]
gi|182668482|gb|EDT80461.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum
NCTC 2916]
gi|182674156|gb|EDT86117.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf]
gi|226841351|gb|ACO84017.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A2
str. Kyoto]
gi|229261948|gb|ACQ52981.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4
str. 657]
gi|295319884|gb|ADG00262.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F
str. 230613]
Length = 137
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G + IG+AISDP A + RK E+ + + GLP
Sbjct: 2 RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ F ++I + + WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTLGPQSEKVLEFC-DLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA ILQ LD +S
Sbjct: 121 KVAATYILQGYLDSLS 136
>gi|116872931|ref|YP_849712.1| holliday junction resolvase, putative [Listeria welshimeri serovar
6b str. SLCC5334]
gi|116741809|emb|CAK20933.1| holliday junction resolvase, putative [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 135
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + + + ++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 61 NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVID 119
Query: 138 SIAAALILQEVLDRIS 153
+AA +ILQ LD +
Sbjct: 120 KLAAVMILQSYLDTTN 135
>gi|251783469|ref|YP_002997774.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242392101|dbj|BAH82560.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|322412847|gb|EFY03755.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
gi|323128215|gb|ADX25512.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 139
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + L + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKEEFGFERLGELVKQYQVDQFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ I+ +P + DERLTTV A+++LI+ +VSR KR +
Sbjct: 62 PKNMNNTSGPRVEASKAYGEK-IESLFSLPVHYQDERLTTVEAERMLIEQADVSRGKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|152976801|ref|YP_001376318.1| Holliday junction resolvase-like protein [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|189046085|sp|A7GT65|RUVX_BACCN RecName: Full=Putative Holliday junction resolvase
gi|152025553|gb|ABS23323.1| Holliday junction resolvase YqgF [Bacillus cytotoxicus NVH 391-98]
Length = 137
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
I +D+GTK +G+AISD A + + + + + N+ ++GL
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEEREIFGFDRVSELVKQYNVDKIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR + + + ++ + + + + WDERL+T++A+++LI +VSRKKR Q
Sbjct: 62 PKNMNGTIGPRGEACQRYAESLRE-LLQLEVILWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDR 151
VD +AA +ILQ LD
Sbjct: 121 VDKMAAVVILQGYLDS 136
>gi|284048258|ref|YP_003398597.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
20731]
gi|283952479|gb|ADB47282.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
20731]
Length = 139
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 78/134 (58%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +DLGT+ IG+++SD A + RK + L + E + F++G P
Sbjct: 2 RIMGLDLGTRTIGVSVSDETGFIARGVETIRRKGLENDLKRLGELVEQEEVGQFVLGYPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNGS G R ++ F + +R +P V WDERL+TV+A+++LI+ ++ RKKR + +D
Sbjct: 62 NMNGSIGDRARASEEFKTILEERFPSIPVVLWDERLSTVAAEKVLIEADLQRKKRKKIID 121
Query: 138 SIAAALILQEVLDR 151
+AA +ILQ LD
Sbjct: 122 MMAAVVILQNYLDS 135
>gi|167757700|ref|ZP_02429827.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704]
gi|167664582|gb|EDS08712.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704]
Length = 141
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+AISDP A + RK K+ +T + + I + ++G
Sbjct: 2 RIMGLDYGSKTVGVAISDPLGITAQAIETICRKDENKLRKTCARIETLIEEYKVERIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +MN G R + F M+ R+ + V WDERLTTV A++ LI+ V R+ R +
Sbjct: 62 LPKHMNNDIGDRAERSLEFG-KMLSRRTGLEVVMWDERLTTVEAERTLIENKVRREDRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D IAA ILQ LD I
Sbjct: 121 YIDKIAAVFILQGYLDSI 138
>gi|225181970|ref|ZP_03735403.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1]
gi|225167332|gb|EEG76150.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1]
Length = 138
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G + IG+A SD A + R + + ++ ++G P
Sbjct: 2 RILGLDVGDRTIGVAASDALGWTAQGLEVIRRTTWENDLKRIRELVAEYEVSLIVVGYPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GPR + F + ++ +P WDERLTT+ A++ L+ ++SR KR + +D
Sbjct: 62 NMNNTVGPRAKLSEEFADKL-SAELNLPVKLWDERLTTMEAERTLLSADMSRAKRKKVID 120
Query: 138 SIAAALILQEVL 149
+AA LILQ L
Sbjct: 121 KMAAVLILQNYL 132
>gi|218680912|ref|ZP_03528809.1| Holliday junction resolvase YqgF [Rhizobium etli CIAT 894]
Length = 144
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 82/145 (56%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEMAGTLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F E +A FIIGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAAAEKVAGFIIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALIL 145
L++M+VSR KR +++DS AA+ IL
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFIL 144
>gi|322806899|emb|CBZ04469.1| putative Holliday junction resolvase [Clostridium botulinum H04402
065]
Length = 137
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G + IG+AISDP A + RK E+ + + GLP
Sbjct: 2 RILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ F ++I + + WDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTLGPQSEKVLEFC-DLIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA ILQ LD +S
Sbjct: 121 KVAATYILQGYLDSLS 136
>gi|167645483|ref|YP_001683146.1| Holliday junction resolvase YqgF [Caulobacter sp. K31]
gi|189046089|sp|B0T191|RUVX_CAUSK RecName: Full=Putative Holliday junction resolvase
gi|167347913|gb|ABZ70648.1| Holliday junction resolvase YqgF [Caulobacter sp. K31]
Length = 164
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 1/161 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L I + ++ PI +D G K IG+A+SD A P + + K ++ A L
Sbjct: 1 MPVLDIAEFAAAIPDYLPIVGLDPGEKTIGVAVSDVTLTVASPLALIKKTKFSEDAATLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + A +IGLP+NM+G+EG R S RA N++ + ++P FWDERL+T + +
Sbjct: 61 QLMGSRKAAGIVIGLPMNMDGTEGVRCQSNRALGRNLLRLQPHIPITFWDERLSTAAVTR 120
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+LI + +V+RK+R + VD +AAA ILQ L+R+ + + G
Sbjct: 121 VLIEEHDVNRKRRAEVVDKMAAAWILQGALERMRGIAEAAG 161
>gi|291522741|emb|CBK81034.1| conserved hypothetical protein TIGR00250 [Coprococcus catus GD/7]
Length = 155
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
+ I +D G+K +G+A+SDP A + RK K+ +T + + I +
Sbjct: 2 KKRIIGLDYGSKTVGVAVSDPLGFTAQGLETITRKDENKLRKTYARIEALIREYEAEQIV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P NMN +EG RV T AF + +R+ + + WDER++TV+++++L++ NV R+ R
Sbjct: 62 LGYPKNMNDTEGERVEKTLAFKEAL-ERRTGLEVILWDERMSTVASERVLMEGNVRREDR 120
Query: 133 IQKVDSIAAALILQEVLDRISFLESSK 159
+D +AAA ILQ LD SF E+
Sbjct: 121 KTYIDKMAAAFILQGYLDYQSFSENQA 147
>gi|103486415|ref|YP_615976.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256]
gi|124107445|sp|Q1GUM9|RUVX_SPHAL RecName: Full=Putative Holliday junction resolvase
gi|98976492|gb|ABF52643.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256]
Length = 152
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 57/152 (37%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M D +L +A +D+GTK IG+A+ D G FA P +VRK+ + L
Sbjct: 1 MITTAAPDFAAALPNGGRLAGLDVGTKTIGVALCDAGWSFASPDKTIVRKRFSADLDALK 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + + ++GLPLNM+GS+ PR STRAF N+ + +P + WDER +T + ++
Sbjct: 61 ALVAGQAVVGLVVGLPLNMDGSDSPRTQSTRAFARNLA--PLGLPVLLWDERWSTAAVER 118
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+I +VSR KR +++DS AAA ILQ +D +
Sbjct: 119 AMIAADVSRAKRAERIDSAAAAFILQGAIDAM 150
>gi|225869409|ref|YP_002745357.1| Holliday junction resolvase [Streptococcus equi subsp.
zooepidemicus]
gi|259495714|sp|C0MGB3|RUVX_STRS7 RecName: Full=Putative Holliday junction resolvase
gi|225702685|emb|CAX00789.1| putative Holliday junction resolvase [Streptococcus equi subsp.
zooepidemicus]
Length = 139
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + Q L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKINEDKQDFGFDRLAELVKQYQVDRFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ I+ ++P + DERLTTV A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASKAYGDR-IEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 121 VIDKLAAQLILQNYLD 136
>gi|126653902|ref|ZP_01725749.1| Holliday junction resolvase-like protein [Bacillus sp. B14905]
gi|126589627|gb|EAZ83766.1| Holliday junction resolvase-like protein [Bacillus sp. B14905]
Length = 138
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K +G+A+SD A + + + + I F++G
Sbjct: 2 RIMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYAITEFVVGF 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSRKKR Q
Sbjct: 62 PKNMNNTVGPRGEASENY-KTLLEETFSLPVKLWDERLTTMAAERMLIEADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 121 IDKMAAVMILQGYLDSKN 138
>gi|108758109|ref|YP_633960.1| hypothetical protein MXAN_5823 [Myxococcus xanthus DK 1622]
gi|118597216|sp|Q1D063|RUVX_MYXXD RecName: Full=Putative Holliday junction resolvase
gi|108461989|gb|ABF87174.1| conserved hypothetical protein TIGR00250 [Myxococcus xanthus DK
1622]
Length = 151
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLGTK IG+A+SD A + R + L + + + ++GLPL
Sbjct: 2 RTMGLDLGTKTIGVAVSDGLGLTAQGITTVRRTSLKADLAALATVASEHEVTHVVLGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSEGPR ++R F + + + V WDERL+TV+A + L++ +VSR +R + +D
Sbjct: 62 NMDGSEGPRAEASRKFADTLA-QSLGVTVELWDERLSTVAATRTLLEADVSRARRREVID 120
Query: 138 SIAAALILQEVLD 150
+AA ILQ LD
Sbjct: 121 QVAAQFILQGWLD 133
>gi|229086950|ref|ZP_04219107.1| Holliday junction resolvase [Bacillus cereus Rock3-44]
gi|228696326|gb|EEL49154.1| Holliday junction resolvase [Bacillus cereus Rock3-44]
Length = 137
Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+AISD A + ++ + + N+ ++GL
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGIFGFDRVSELVKQYNVDKIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR + + + ++ + + + + WDERL+T++A+++LI +VSRKKR Q
Sbjct: 62 PKNMNGTIGPRGEACQQYAESLRE-LLQLEVILWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 121 IDKMAAVVILQGYLDS 136
>gi|329851398|ref|ZP_08266155.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum
C19]
gi|328840244|gb|EGF89816.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum
C19]
Length = 157
Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ I +L L + +DLG K IG+A+SD A P + + K T A L
Sbjct: 1 MAVIDITELKAGLPARHALLGLDLGEKTIGVAVSDISLTLASPLELIRKTKFTHEAERLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ A +IGLP+NM+G+EGPR S RAF N++ + VP FWDER ++ + +
Sbjct: 61 HLMQAREAAGLVIGLPVNMDGTEGPRAQSCRAFARNLLRLR-DVPIAFWDERWSSAAMNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
LI + ++SR KR + +D AAA ILQ LDRI
Sbjct: 120 FLIEEADLSRAKRAEVIDRNAAAYILQGALDRIK 153
>gi|313891828|ref|ZP_07825433.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII
345-E]
gi|329121066|ref|ZP_08249697.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Dialister micraerophilus DSM 19965]
gi|313119822|gb|EFR43009.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII
345-E]
gi|327471228|gb|EGF16682.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Dialister micraerophilus DSM 19965]
Length = 145
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 78/137 (56%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D+G+ IG+AISD A + + L + I + ++ ++G+PL
Sbjct: 2 RIMALDVGSHTIGVAISDLMGWTAQGLETIRHSTREKDFERLKTIIDSYDVKEIVVGMPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG++G R T FV ++ +P FWDERLTTV AQ+ LI ++SRKKR + +D
Sbjct: 62 NMNGTKGIRAELTEDFVKDLKSAFPNIPCAFWDERLTTVMAQKTLISADMSRKKRKKVID 121
Query: 138 SIAAALILQEVLDRISF 154
+AA +IL+ L + F
Sbjct: 122 KLAATVILEGYLRHLEF 138
>gi|295109588|emb|CBL23541.1| conserved hypothetical protein TIGR00250 [Ruminococcus obeum
A2-162]
Length = 140
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+A+SDP A + RK K+ QT + I + ++G
Sbjct: 2 RILGLDYGSKTVGVAVSDPLGLTAQKVETIWRKQENKLRQTLARIEELIAEYEVEKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R F M+ ++ + + WDERLTTV A + LI+ V R+ R Q
Sbjct: 62 FPKNMNNTVGERAEKALEFGE-MLKKRTGLEVIMWDERLTTVEADRTLIEAGVRRENRKQ 120
Query: 135 KVDSIAAALILQEVLDRIS 153
+D IAA ILQ LD +S
Sbjct: 121 YLDGIAAVFILQGYLDSLS 139
>gi|295115537|emb|CBL36384.1| conserved hypothetical protein TIGR00250 [butyrate-producing
bacterium SM4/1]
Length = 140
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 77/139 (55%), Gaps = 4/139 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I D G+K G+A+SDP A +VRK K+ QT + I I A ++G
Sbjct: 2 RIMGQDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R T +F M++R+ P + WDERLTT++A+++L++ V R+ R
Sbjct: 62 YPKNMNNTAGERAEKTESF-KEMLERRTGKPVILWDERLTTIAAERMLMESGVRRENRKA 120
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AAALILQ LD
Sbjct: 121 VIDKVAAALILQGYLDSQR 139
>gi|187933084|ref|YP_001885374.1| Holliday junction resolvase-like protein [Clostridium botulinum B
str. Eklund 17B]
gi|226725503|sp|B2THN2|RUVX_CLOBB RecName: Full=Putative Holliday junction resolvase
gi|187721237|gb|ACD22458.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
17B]
Length = 137
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +DLG K IG+A+SDP A + R + EL + +IGLP
Sbjct: 2 RILGLDLGKKTIGVAVSDPLGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP + +++ + + FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTIGPSGEIAME-MGKLVEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
+A+ ILQ LDRIS
Sbjct: 121 KVASTYILQGYLDRIS 136
>gi|313896256|ref|ZP_07829809.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975055|gb|EFR40517.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137
str. F0430]
Length = 142
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 73/140 (52%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
S+D+G IG+A+SD A + R L + + + A + GLP
Sbjct: 3 RYMSLDIGDVTIGIAVSDLLGLTAQGVETIRRTTPAADFERLGTLMRDYEVDALVAGLPK 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+MNG EG R RAF+ R V +WDERL+TV+A + L++ +VSRKKR + +D
Sbjct: 63 HMNGDEGTRCEMVRAFMAEAAQRFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRRKVID 122
Query: 138 SIAAALILQEVLDRISFLES 157
+AA ILQ LDR L +
Sbjct: 123 KMAAVYILQGFLDRQRNLHT 142
>gi|15613832|ref|NP_242135.1| hypothetical protein BH1269 [Bacillus halodurans C-125]
gi|32130069|sp|Q9KDE4|RUVX_BACHD RecName: Full=Putative Holliday junction resolvase
gi|10173885|dbj|BAB04988.1| BH1269 [Bacillus halodurans C-125]
Length = 140
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
+D+GTK IG+A+SD A R + + S + + +IGL
Sbjct: 2 RTLGLDVGTKTIGIAVSDALGWTAQGLETWRRSDANEQADFEHIASLVKEHEVTTIVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+GS GP + F + R V V WDERLTT +A+++LI +VSRKKR
Sbjct: 62 PKNMDGSIGPSGERSETFAAEL-RRYVPCEIVMWDERLTTTAAERMLISADVSRKKRKSV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LDR
Sbjct: 121 IDKMAAVMILQGYLDR 136
>gi|56963359|ref|YP_175090.1| holliday junction resolvase [Bacillus clausii KSM-K16]
gi|62900942|sp|Q5WHM6|RUVX_BACSK RecName: Full=Putative Holliday junction resolvase
gi|56909602|dbj|BAD64129.1| holliday junction resolvase [Bacillus clausii KSM-K16]
Length = 142
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 55/137 (40%), Positives = 75/137 (54%), Gaps = 3/137 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIGLPL 77
+D+GTK IG+AISD A P + R + L I ++ +IG P
Sbjct: 4 IGLDVGTKTIGVAISDAFGWTAQGLPTIQRSEDDPNRDFEALAQLIKENDVQKVVIGYPK 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ G + F + +++ V V WDERLTT +AQ++LID +VSRKKR + VD
Sbjct: 64 NMNGTVGESATRSETFARTL-EQQCNVQTVLWDERLTTAAAQRVLIDADVSRKKRKKAVD 122
Query: 138 SIAAALILQEVLDRISF 154
+AA ILQ LDR S
Sbjct: 123 KMAAVFILQGYLDRQSH 139
>gi|16126678|ref|NP_421242.1| hypothetical protein CC_2439 [Caulobacter crescentus CB15]
gi|221235457|ref|YP_002517894.1| endonuclease involved in recombination [Caulobacter crescentus
NA1000]
gi|32130061|sp|Q9A5K8|RUVX_CAUCR RecName: Full=Putative Holliday junction resolvase
gi|254767503|sp|B8GZJ7|RUVX_CAUCN RecName: Full=Putative Holliday junction resolvase
gi|13423984|gb|AAK24410.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220964630|gb|ACL95986.1| endonuclease involved in recombination [Caulobacter crescentus
NA1000]
Length = 156
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L IED +L + +D G K IG+A+SD R A P + + K ++ A +L
Sbjct: 1 MPVLDIEDFADALPQYAAVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEQLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + A +IGLP+NM+G+EG R S RA N++ K +P FWDERL+T + +
Sbjct: 61 KLMDSRGAVAIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR 120
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+LI + ++SRK+R + VD +AA ILQ L+R+ L
Sbjct: 121 VLIDEHDISRKRRDEVVDKMAAGWILQGALERLRGL 156
>gi|229918437|ref|YP_002887083.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b]
gi|229469866|gb|ACQ71638.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b]
Length = 140
Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFII 73
+ + +D+G+K IG+A+SD A + + L FI ++ ++
Sbjct: 1 MKRVMGLDVGSKTIGVAVSDLMGWTAQGVETVYWTEPDFDEAVRLLRPFIEQYDVKEVVV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMNG+ GPR ++ AF ++ +P V DERLTT+ A+++LI +VSRKKR
Sbjct: 61 GHPKNMNGTVGPRGEASEAFAEAFTEQ-TGLPCVLVDERLTTMQAERMLISADVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+D +AA +ILQ LDR
Sbjct: 120 AVIDKMAAVMILQNYLDR 137
>gi|90423758|ref|YP_532128.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
BisB18]
gi|146325601|sp|Q215X7|RUVX_RHOPB RecName: Full=Putative Holliday junction resolvase
gi|90105772|gb|ABD87809.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
BisB18]
Length = 163
Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
IL + + + +DLGTK IG+A+SDP RR A ++ A LL
Sbjct: 4 PILPLIEAAAQWPARGALIGLDLGTKTIGVAVSDPDRRLATGVETIIHTAFKANAARLLL 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
N F++GLP+NM+GSEGPR STRAF N R +P WDERL+T + ++
Sbjct: 64 LAGQRNAVGFVLGLPINMDGSEGPRAQSTRAFARNFA-RLTDLPIGLWDERLSTSAVERE 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI +VSR KR + +D AA ILQ LDR++ L ++
Sbjct: 123 LIANDVSRAKRAKVIDEHAAIFILQGALDRLTVLNAA 159
>gi|291548156|emb|CBL21264.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. SR1/5]
Length = 150
Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
+ +D G+K +G+A+SDP A + RK K+ +T + I+ + ++G
Sbjct: 2 RVLGLDYGSKTVGVAVSDPLGLTAQGVETVWRKQENKLRRTLARIEEIISEYQVTEIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R + F M++++ +P V WDERLTT++A + L + V ++ R Q
Sbjct: 62 YPKNMNNTVGERAEKSLEF-KEMLEKRTGLPVVMWDERLTTMAADRTLEETGVHKEDRKQ 120
Query: 135 KVDSIAAALILQEVLDRISFLESSK 159
+D +AA ILQ LD ++ +
Sbjct: 121 YLDQVAAVFILQGYLDAAAYRREQQ 145
>gi|228993125|ref|ZP_04153047.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442]
gi|228999173|ref|ZP_04158755.1| Holliday junction resolvase [Bacillus mycoides Rock3-17]
gi|229006721|ref|ZP_04164355.1| Holliday junction resolvase [Bacillus mycoides Rock1-4]
gi|228754582|gb|EEM03993.1| Holliday junction resolvase [Bacillus mycoides Rock1-4]
gi|228760790|gb|EEM09754.1| Holliday junction resolvase [Bacillus mycoides Rock3-17]
gi|228766584|gb|EEM15225.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442]
Length = 137
Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+AISD A + ++ + + N+ I+GL
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYNVDKIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR + + F ++ + + + + WDERL+T++A+++LI +VSRKKR Q
Sbjct: 62 PKNMNGTIGPRGEACQQFAQSLRE-LLQLDVMMWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 121 IDKMAAVVILQGYLDS 136
>gi|292670704|ref|ZP_06604130.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
noxia ATCC 43541]
gi|292647650|gb|EFF65622.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
noxia ATCC 43541]
Length = 137
Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 76/137 (55%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+G IG+A+SD A + R+ ++ L I A + GLP +M
Sbjct: 1 MSLDIGDATIGVAVSDLLGLTAQGVETIRRRDLSDDLNRLGVLIQEYEADALVAGLPKHM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG EG R RAF+ + +R + +WDERL+TV+A + L++ +VSRKKR + +D +
Sbjct: 61 NGQEGERCALVRAFMADAAERFPMMEIHYWDERLSTVAASRTLLEGDVSRKKRRKVIDKM 120
Query: 140 AAALILQEVLDRISFLE 156
AA ILQ LDR L+
Sbjct: 121 AAVYILQGFLDRQQHLK 137
>gi|304436654|ref|ZP_07396623.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370350|gb|EFM24006.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 143
Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 72/139 (51%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ S+DLG IG+A+SD A + R + L + + A + GL
Sbjct: 1 MKRYMSLDLGDATIGVAVSDLLGLTAQGVETVRRTTLEADIARLGQLMQEYEVDALVAGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R RAF+ + + +WDERL+TV+A + LI +VSRKKR +
Sbjct: 61 PKHMNGDEGERCSIVRAFMAKVEEHFPRTEVHYWDERLSTVAASRALIAGDVSRKKRRKV 120
Query: 136 VDSIAAALILQEVLDRISF 154
+D +AA ILQ LDR +
Sbjct: 121 IDKMAAVYILQGFLDRQNM 139
>gi|166031235|ref|ZP_02234064.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
27755]
gi|166029082|gb|EDR47839.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
27755]
Length = 144
Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G++ +G+A+SDP A + RK K+ +T + + + ++G
Sbjct: 2 RIMGLDYGSRTVGVAVSDPLGITAQAVETICRKDENKLRKTCARIEELVAEYEVEKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +MN G R + F MI R+ + V WDERLTTVSA++ LI+ V R+ R +
Sbjct: 62 LPKHMNNDIGDRAEKSMQFGE-MIGRRTGLEVVMWDERLTTVSAERTLIENKVRREDRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D IAA ILQ LD
Sbjct: 121 YIDQIAAVFILQGYLDS 137
>gi|20807699|ref|NP_622870.1| endonuclease [Thermoanaerobacter tengcongensis MB4]
gi|32130041|sp|Q8R5S9|RUVX_THETN RecName: Full=Putative Holliday junction resolvase
gi|20516249|gb|AAM24474.1| predicted endonuclease involved in recombination
[Thermoanaerobacter tengcongensis MB4]
Length = 139
Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D+G K IG+AISD A + RK + + + ++ ++GLP
Sbjct: 2 RVLGLDVGDKTIGVAISDVSSTIAQGITTIRRKSFVEDVKAIEEIVKKYSVEKVVVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136
NMNGS GP+ F + + + +P VFWDERLTT+ A++ LI+ ++SR KR + +
Sbjct: 62 NMNGSIGPQGEKVIKFGEKLRE-VLRIPVVFWDERLTTLQAERFLIEGVDMSRGKRKKVI 120
Query: 137 DSIAAALILQEVLDR 151
D +AA +ILQ LD
Sbjct: 121 DKLAATIILQSYLDS 135
>gi|329117501|ref|ZP_08246218.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD
2020]
gi|326907906|gb|EGE54820.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD
2020]
Length = 139
Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + L + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDKKEFGLARLEELVNQYKVDKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN S GPRV +++A+ N+I + +P + DERLTTV A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNSSGPRVEASQAYG-NLIQEQFNIPVEYQDERLTTVQAERMLIEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA LILQ LDRI
Sbjct: 121 VIDKLAAQLILQNYLDRI 138
>gi|241890070|ref|ZP_04777368.1| putative Holliday junction resolvase [Gemella haemolysans ATCC
10379]
gi|241863692|gb|EER68076.1| putative Holliday junction resolvase [Gemella haemolysans ATCC
10379]
Length = 142
Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73
++ I +D G+K IG+A+SD A + + + + + N+ ++
Sbjct: 3 DKRIMGLDYGSKTIGVAVSDLLGFTAQGIETININEQVKDFKIKRIKELVQEHNVGTIVV 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR
Sbjct: 63 GLPKNMDNSVGFRGEATLYFVEVLKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D +AA LILQ LD+++
Sbjct: 123 NVIDKMAAVLILQTYLDKLN 142
>gi|225871407|ref|YP_002747354.1| Holliday junction resolvase [Streptococcus equi subsp. equi 4047]
gi|254767526|sp|C0MAR3|RUVX_STRE4 RecName: Full=Putative Holliday junction resolvase
gi|225700811|emb|CAW95508.1| putative Holliday junction resolvase [Streptococcus equi subsp.
equi 4047]
Length = 139
Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + Q L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIRINEDKQDFGFDRLAELVKQYQVDRFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ I+ ++P + DERLTTV A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASKAYGDK-IEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 121 VIDKLAAQLILQNYLD 136
>gi|160880429|ref|YP_001559397.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg]
gi|189046094|sp|A9KKS6|RUVX_CLOPH RecName: Full=Putative Holliday junction resolvase
gi|160429095|gb|ABX42658.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg]
Length = 150
Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+ +G+AISD + A + RK K+ QT + I + ++G
Sbjct: 2 RIMGLDYGSVTVGVAISDSLKLTAQGIEVIRRKSETKLRQTLARIEELIKEYEVEEIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R + F ++ R+ +P V WDERLTTV+A Q+L VS KK+++
Sbjct: 62 YPKNMNNTIGERAEKSEEFAEHL-RRRTGLPVVLWDERLTTVAAHQVLNAGEVSLKKKME 120
Query: 135 KVDSIAAALILQEVLDRIS 153
VD +AA ILQ LD +S
Sbjct: 121 VVDKLAAVFILQGYLDYLS 139
>gi|84684665|ref|ZP_01012565.1| hypothetical protein 1099457000245_RB2654_02114 [Maritimibacter
alkaliphilus HTCC2654]
gi|84667000|gb|EAQ13470.1| hypothetical protein RB2654_02114 [Rhodobacterales bacterium
HTCC2654]
Length = 155
Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 2/139 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLP 76
+A +D G K IG+A+SD R+ A P + R KK TQ A L++ + I+ ++GLP
Sbjct: 18 ALAGLDYGDKTIGVAVSDGMRQVATPLDTIRRGKKFTQDAEALMAILDERAISGLVLGLP 77
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NM+G+EGPR TRAF N+ R P FWDERL+TV+A++ L++ + SR KR +
Sbjct: 78 RNMDGTEGPRCQKTRAFARNL-SRLTERPITFWDERLSTVAAERALLEADTSRAKRSGVI 136
Query: 137 DSIAAALILQEVLDRISFL 155
D +AA ILQ LDR+ L
Sbjct: 137 DHVAAGYILQGALDRMRHL 155
>gi|121602720|ref|YP_989125.1| hypothetical protein BARBAKC583_0838 [Bartonella bacilliformis
KC583]
gi|167012695|sp|A1UT22|RUVX_BARBK RecName: Full=Putative Holliday junction resolvase
gi|120614897|gb|ABM45498.1| conserved hypothetical protein TIGR00250 [Bartonella bacilliformis
KC583]
Length = 161
Score = 180 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I+ ++ L Q IA +DLGTK IG+AISD F++PRP + RKK T AL+L+
Sbjct: 1 MAIITIDRVISHLLSKQTIAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLDALKLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ IIGLP+NM+GS GPRV +TR FV N+ +PF+FWDERL+T++AQ+
Sbjct: 61 KIFDHENVGVAIIGLPINMDGSNGPRVQATRTFVSNIA-MYTKIPFIFWDERLSTIAAQR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++++VSR KR ++DS AAA ILQ LDRI L +
Sbjct: 120 HLLEIDVSRIKRENRIDSAAAAFILQGALDRIQILRQN 157
>gi|319946059|ref|ZP_08020308.1| crossover junction endodeoxyribonuclease [Streptococcus australis
ATCC 700641]
gi|319747867|gb|EFW00112.1| crossover junction endodeoxyribonuclease [Streptococcus australis
ATCC 700641]
Length = 139
Score = 180 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + +K L + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKGEFGLDRLSELVKEYRVDRFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGKRL-EELFNLPVEYQDERLTTVAAERMLIEQADISRNKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|302382947|ref|YP_003818770.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC
15264]
gi|302193575|gb|ADL01147.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC
15264]
Length = 173
Score = 180 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 63/154 (40%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
+L + DL + P+ +DLG IG+A SD R A P + + K T A L
Sbjct: 10 PVLNLTDLAAACPPDTAWMGLDLGETTIGVATSDTSRMIASPLELIRKSKFTAEAHALFR 69
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ ++A +IGLP+NM+G+EGPR S RAF N+ DR V FWDERL+T + ++
Sbjct: 70 LMDHRKVSALVIGLPVNMDGTEGPRAQSCRAFARNL-DRIRPVNVAFWDERLSTSAVERF 128
Query: 122 LI-DMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
LI ++++SRK+R VD AAA ILQ LDR+
Sbjct: 129 LIDELDLSRKRRAGVVDRTAAAWILQGALDRVRH 162
>gi|239827825|ref|YP_002950449.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
gi|259495706|sp|C5D4Z1|RUVX_GEOSW RecName: Full=Putative Holliday junction resolvase
gi|239808118|gb|ACS25183.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
Length = 138
Score = 180 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGL 75
+ +DLGTK +G+A+SD A + ++ L I + ++G
Sbjct: 2 RVLGLDLGTKTLGVAVSDELGWTAQGIETISIDEERGEYGLKRLREIIDEYEVDTIVVGF 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR +++ F +++ + +P + WDERL+T++A+++LI +VSRKKR Q
Sbjct: 62 PKNMNGTVGPRAEASQRFA-KLLESEFSLPVILWDERLSTMAAERMLITADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 121 IDKMAAVVILQSYLDS 136
>gi|188587786|ref|YP_001920521.1| Holliday junction resolvase-like protein [Clostridium botulinum E3
str. Alaska E43]
gi|251780381|ref|ZP_04823301.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|226725502|sp|B2V3W4|RUVX_CLOBA RecName: Full=Putative Holliday junction resolvase
gi|188498067|gb|ACD51203.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
gi|243084696|gb|EES50586.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 137
Score = 180 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +DLG K IG+AISDP A + R + EL + +IGLP
Sbjct: 2 RILGLDLGKKTIGVAISDPLGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP + +++ + + FWDERLTTV+A + +++ ++SR KR + VD
Sbjct: 62 NMNGTIGPSGEIAME-MGKLVEEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIVD 120
Query: 138 SIAAALILQEVLDRIS 153
+A+ ILQ LDRIS
Sbjct: 121 KVASTYILQGYLDRIS 136
>gi|210610063|ref|ZP_03288242.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787]
gi|210152674|gb|EEA83680.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787]
Length = 143
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
+ +D G+K +G+AISDP A + RK K+ QT + + + ++G
Sbjct: 2 RVMGLDYGSKTVGVAISDPLGITAQGIETIHRKAENKLRQTLARIEELVKEYEVDKLVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +MN + G R + + M++R+ +P + WDERLTT+ A++ LI+ V R+ R +
Sbjct: 62 FPKHMNNTIGDRAEKSLE-LKAMLERRTGLPVIMWDERLTTLEAERTLIESKVRREDRKK 120
Query: 135 KVDSIAAALILQEVLDRISF 154
VD IAA ILQ LD I
Sbjct: 121 YVDKIAAVFILQGYLDSIRM 140
>gi|259046501|ref|ZP_05736902.1| Holliday junction resolvase [Granulicatella adiacens ATCC 49175]
gi|259036666|gb|EEW37921.1| Holliday junction resolvase [Granulicatella adiacens ATCC 49175]
Length = 144
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 87/139 (62%), Gaps = 4/139 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFI 72
PN + +D+G+K +G+A+SD A + + +K ++ ++ + + +
Sbjct: 2 PNMRLMGLDVGSKTVGVAVSDLMGWTAQGVETIPINEKASEFGFKRVVELVEEYGVEKIV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKK 131
IGLP NMN +EGPRV ++R + ++ ++++ +P VF DERLTT+ A+++L++ VSRKK
Sbjct: 62 IGLPKNMNNTEGPRVEASRRYGASL-EKRLQIPIVFHDERLTTMQAERMLVEEGNVSRKK 120
Query: 132 RIQKVDSIAAALILQEVLD 150
R Q +D +AA +ILQ LD
Sbjct: 121 RKQVIDMLAAVMILQNYLD 139
>gi|327439564|dbj|BAK15929.1| predicted endonuclease [Solibacillus silvestris StLB046]
Length = 138
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISD A + + + + N+ F++G
Sbjct: 2 RIMGLDVGSKTVGVAISDALGWTAQGIETIKIDEAAGEFGIERINELVKEHNVTEFVVGY 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GPR ++ ++ +++ P WDER+TT++A+++LI+ +VSRKKR Q
Sbjct: 62 PKNMNNTIGPRGEASESY-KKLLEDTFGFPVKLWDERMTTMAAERMLIEADVSRKKRKQV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 121 IDKMAAVMILQGYLDSKN 138
>gi|302389909|ref|YP_003825730.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM
16646]
gi|302200537|gb|ADL08107.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM
16646]
Length = 145
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 1/141 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G KRIG+A+SD A + R V + + + + IIGLPL
Sbjct: 2 RILGLDVGNKRIGVAVSDELGITAQGVGVIERGDVKRDIERISEIVKRYQVKKVIIGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ + F + + + +WDERL+TV+A+++LID ++SR+KR +D
Sbjct: 62 NMNGTLGPQGQLVKDFGEKLRH-SLNLDVEYWDERLSTVTAEKVLIDADISRRKRKGVID 120
Query: 138 SIAAALILQEVLDRISFLESS 158
++A +ILQ LD S +++
Sbjct: 121 KLSAIVILQSFLDSRSNIDTG 141
>gi|225387769|ref|ZP_03757533.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
DSM 15981]
gi|225046130|gb|EEG56376.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
DSM 15981]
Length = 151
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+A+ DP A +VRK K+ +T + I I ++G
Sbjct: 2 RIMGLDYGSKTVGVAVCDPLGITAQTVETIVRKDENKLRKTLARIEELIGAYEIERIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R + +R+ +P + WDERLTTV+A ++L++ V R+ R +
Sbjct: 62 YPKNMNNTVGERAQKAEELKAAL-ERRTGLPVILWDERLTTVAADRVLMESGVRREHRKE 120
Query: 135 KVDSIAAALILQEVLDRISF 154
VD IAAA+ILQ LD +SF
Sbjct: 121 SVDQIAAAMILQGYLDNLSF 140
>gi|197303729|ref|ZP_03168766.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC
29176]
gi|197297249|gb|EDY31812.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC
29176]
Length = 148
Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats.
Identities = 53/146 (36%), Positives = 78/146 (53%), Gaps = 4/146 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D GTK +G+AISD + A + RK K+ +T + I + ++G
Sbjct: 2 RIMGLDYGTKTVGVAISDALKITAQGIETIQRKEENKLRKTCARIEQLIKEYEVEKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +MN G R + F M++R+ + V WDERLTTV+A++ LI+ +V R+ R Q
Sbjct: 62 FPKHMNNDVGERAEKSLEF-KAMLERRTGLEVVMWDERLTTVAAERTLIESSVRRENRKQ 120
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
VD IAA ILQ LD +S + G
Sbjct: 121 YVDKIAAVFILQGYLDLLSMRNGADG 146
>gi|288870608|ref|ZP_06114688.2| putative holliday junction resolvase [Clostridium hathewayi DSM
13479]
gi|288866578|gb|EFC98876.1| putative holliday junction resolvase [Clostridium hathewayi DSM
13479]
Length = 161
Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELL 60
+ L K I +D G+K +G+A+SD A + R+ K+ +T +
Sbjct: 3 FTLGTLYDVEKMRMRIMGLDYGSKTVGVAVSDSLGLTAQALETITREDENKLRKTCARIE 62
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I I ++G P NMN + G RV T +F M++R+ +P V WDERLTTV +++
Sbjct: 63 ELIREYEIETIVLGYPKNMNNTLGDRVEKTESF-KAMLERRTGLPVVLWDERLTTVQSER 121
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
IL + V R+ R +D +AA LILQ LD +
Sbjct: 122 ILQESGVRRENRKAVIDKVAAGLILQGYLDSLP 154
>gi|294501347|ref|YP_003565047.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551]
gi|295706694|ref|YP_003599769.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319]
gi|294351284|gb|ADE71613.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551]
gi|294804353|gb|ADF41419.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319]
Length = 138
Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 80/136 (58%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+GTK IG+A+SD A + +++ Q+ L I ++ ++GL
Sbjct: 2 RVLGLDVGTKTIGVAVSDEMGWTAQGIETIKIADEQMEQSYPRLQQLIDEYSVEKIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR + F N + K+ + + WDERL+T++A+++L+ +VSRKKR +
Sbjct: 62 PKNMNGTIGPRGEACIEFADN-VKEKLNIETMMWDERLSTMAAERVLLSADVSRKKRKKV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 121 IDKMAAVMILQGYLDS 136
>gi|238924257|ref|YP_002937773.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656]
gi|259495705|sp|C4ZAY4|RUVX_EUBR3 RecName: Full=Putative Holliday junction resolvase
gi|238875932|gb|ACR75639.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656]
Length = 143
Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 4/143 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+A+SD A + RK K+ QT + I + ++G
Sbjct: 2 RILGLDFGSKTVGVAVSDELLITAQGVEIVRRKSPSKLRQTLARIEEIIAEYKVDRIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN +EG R T+ F +M+ R+ + ++WDERLTTV+A + +++ + R+ R +
Sbjct: 62 YPKNMNNTEGERCEKTKEFG-DMLARRTGLEVIYWDERLTTVAADRSMMETGIRRENRKE 120
Query: 135 KVDSIAAALILQEVLDRISFLES 157
VD IAA ILQ LD +S S
Sbjct: 121 FVDEIAAIFILQGYLDYLSNSRS 143
>gi|83594508|ref|YP_428260.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170]
gi|146325602|sp|Q2RPH2|RUVX_RHORT RecName: Full=Putative Holliday junction resolvase
gi|83577422|gb|ABC23973.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170]
Length = 161
Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I ++ +L P +P+ +DLGT+ IG+A SD A P + R+K T EL
Sbjct: 1 MPICSLQTFADALPPGRPVLGLDLGTRTIGVATSDVRLTLATPIITIKRRKFTLDVQELF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ A ++GLP+ M+GSEGPR +TRAF N++ + +P + WDERL+T + +
Sbjct: 61 ALADGRAAAGLVLGLPVEMDGSEGPRCQATRAFARNLLALR-DLPVLLWDERLSTAAVNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
L+ + +++R +R + VD AAA ILQ LD +
Sbjct: 120 FLVGEADMTRARRAEVVDRAAAAYILQGALDAL 152
>gi|154686879|ref|YP_001422040.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens FZB42]
gi|308174438|ref|YP_003921143.1| Holliday junction resolvase [Bacillus amyloliquefaciens DSM 7]
gi|167012691|sp|A7Z733|RUVX_BACA2 RecName: Full=Putative Holliday junction resolvase
gi|154352730|gb|ABS74809.1| YrrK [Bacillus amyloliquefaciens FZB42]
gi|307607302|emb|CBI43673.1| putative Holliday junction resolvase [Bacillus amyloliquefaciens
DSM 7]
Length = 138
Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +DLGTK +G+A+SD A + + L + N+ ++G
Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGF 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR +
Sbjct: 62 PKNMNGTIGPRGEASQTFA-KLLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD ++
Sbjct: 121 IDKMAAVMILQGYLDSLN 138
>gi|882478|gb|AAA69116.1| ORF_o180; was also ORF_o62p before splice [Escherichia coli str.
K-12 substr. MG1655]
Length = 180
Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 44 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 103
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 104 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 162
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 163 VDSASAVIILESYFEQ 178
>gi|163816752|ref|ZP_02208115.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759]
gi|158448009|gb|EDP25004.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759]
Length = 149
Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 11/146 (7%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITT-------EN 67
+ +D GTK +G+A+SDP A P + RK K+ QT + + I E
Sbjct: 2 RVLGLDYGTKTVGVAVSDPLEITAQPLETIERKSAGKLRQTLARIEAIIEEYGAAGQQEK 61
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I ++G P NMN +EG R +T +F +++ +R+ + V WDERLTTV A++IL+D V
Sbjct: 62 IEKIVLGYPKNMNNTEGDRCEATVSFKNDL-ERRTGLEVVLWDERLTTVEAERILMDSGV 120
Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
R+ R +D +AAA+ILQ LD S
Sbjct: 121 RRENRKTYIDKMAAAVILQNYLDSKS 146
>gi|332981265|ref|YP_004462706.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON]
gi|332698943|gb|AEE95884.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON]
Length = 144
Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G IG+AISD A RK+ ++ + +IGLP
Sbjct: 2 RILGLDVGDNTIGIAISDELGWTAQGLETWRRKQPEADMQHIVDICQKSGVQCIVIGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNGS GP+ AF + D + V WDERL+TV+AQ+ LI+ +VSR KR + +
Sbjct: 62 NMNGSIGPQGKKVIAFKQRLADYMADDIDIVLWDERLSTVAAQRSLIEADVSRAKRKKVI 121
Query: 137 DSIAAALILQEVLDRISFLESS 158
D +AA ILQ LD + ++
Sbjct: 122 DKMAAVYILQGYLDSLRITKNK 143
>gi|262283641|ref|ZP_06061406.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
gi|262260698|gb|EEY79399.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
Length = 139
Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV ++RA+ + + +P + DERLTTV+A+++LI+ +VSR KR +
Sbjct: 62 PKNMNNTSGPRVEASRAYGAKVTE-LFGLPVEYQDERLTTVAAERMLIEQADVSRNKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|258515480|ref|YP_003191702.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM
771]
gi|257779185|gb|ACV63079.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM
771]
Length = 139
Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLP 76
I +DLG K IG+A+SDP A + RK Q L I + ++GLP
Sbjct: 2 RIMCLDLGEKTIGIALSDPFGWTAQGLEIINRKGQPKQELNRLREIIKQYEVEKVVVGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ F+ + RK+ + WDERL+TV+A++IL+ ++SR KR + +
Sbjct: 62 KNMNGTTGPQAEKALDFIEYL-KRKLGLVVEAWDERLSTVAAERILLSADISRGKRKKVI 120
Query: 137 DSIAAALILQEVLDRIS 153
D +AAA+ILQ LD S
Sbjct: 121 DKMAAAVILQGYLDAHS 137
>gi|147677400|ref|YP_001211615.1| endonuclease [Pelotomaculum thermopropionicum SI]
gi|189046102|sp|A5D3C3|RUVX_PELTS RecName: Full=Putative Holliday junction resolvase
gi|146273497|dbj|BAF59246.1| predicted endonuclease [Pelotomaculum thermopropionicum SI]
Length = 154
Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLP 76
I +DLG K+IG+A+SDP A + K + + + + ++GLP
Sbjct: 2 RIMGLDLGDKKIGVALSDPMGWTAQGLDVIAVKGPPEASVERISELVRQYGVGKIVVGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNGS GPR RAF + + +P WDER+TT+ A+++LI+ ++SR +R Q +
Sbjct: 62 RNMNGSFGPRAERARAFAGCLAGA-LNLPVELWDERMTTLEAEKLLIEADLSRARRRQVI 120
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
D +AA LILQ LD G
Sbjct: 121 DKMAAVLILQSFLDSQGRPRREAG 144
>gi|295092925|emb|CBK82016.1| conserved hypothetical protein TIGR00250 [Coprococcus sp. ART55/1]
Length = 149
Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 82/143 (57%), Gaps = 11/143 (7%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTE-------N 67
I +D GTK +G+A+SDP + A P + RK K+ QT + + +
Sbjct: 2 RILGLDYGTKTVGVAVSDPLKMTAQPLETIERKSANKLRQTLARIEAILEEYGAAGERDR 61
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I ++G P NMN SEG R +T+AF ++ +R+ + V WDERLTTV A++IL+D V
Sbjct: 62 IELIVLGYPKNMNNSEGDRCEATQAFKEDL-ERRTGLEVVLWDERLTTVEAERILMDSGV 120
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
R+ R +D +AAA+ILQ LD
Sbjct: 121 RRENRKTYIDKMAAAVILQNYLD 143
>gi|222153870|ref|YP_002563047.1| Holliday junction resolvase [Streptococcus uberis 0140J]
gi|254767528|sp|B9DW62|RUVX_STRU0 RecName: Full=Putative Holliday junction resolvase
gi|222114683|emb|CAR43762.1| putative Holliday junction resolvase [Streptococcus uberis 0140J]
Length = 139
Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + L + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKNSFGFERLSELVKQYQVDKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ I+ ++P V+ DERLTTV A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGKK-IEDLFHIPVVYQDERLTTVQAERMLIEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|295396921|ref|ZP_06807045.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC
11563]
gi|294974855|gb|EFG50558.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC
11563]
Length = 139
Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+D+G+K +G+A+SDP A + + + L I + A ++GL
Sbjct: 2 RYMGLDVGSKTVGVAVSDPFGWTAQGVEIIPIDEELEEFGLDRLGELIAEYKVEALVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN S GPR +++ + +IDR +P + DERLTTV A+++LI +VSRKKR +
Sbjct: 62 PKNMNNSIGPRAEASQKYGQLVIDR-FDLPVFYQDERLTTVQAERMLIANDVSRKKRKKV 120
Query: 136 VDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 121 IDKLAAVLILQNYLD 135
>gi|13470868|ref|NP_102437.1| hypothetical protein mlr0681 [Mesorhizobium loti MAFF303099]
gi|32130057|sp|Q98M90|RUVX_RHILO RecName: Full=Putative Holliday junction resolvase
gi|14021611|dbj|BAB48223.1| mlr0681 [Mesorhizobium loti MAFF303099]
Length = 166
Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 78/151 (51%), Positives = 106/151 (70%), Gaps = 1/151 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ L + +A +DLG K IG+A+SD G FAHPRP ++R+K + A LL+ + EN+
Sbjct: 1 MPAWLADGRTLAGLDLGDKTIGVAVSDRGFAFAHPRPVIMRRKFSLDAAVLLALLKKENV 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A IGLP+NM+GSEGPR +RAFV NM + +PFVFWDERL+TV+A++ LI+M+ S
Sbjct: 61 GAVAIGLPINMDGSEGPRAQKSRAFVRNMA-QLSDLPFVFWDERLSTVAAERTLIEMDFS 119
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSK 159
R KR K+DS AAA ILQ VLDR+ L+S+
Sbjct: 120 RAKRAGKIDSAAAAFILQGVLDRLQSLDSAA 150
>gi|326791231|ref|YP_004309052.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427]
gi|326541995|gb|ADZ83854.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427]
Length = 139
Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFIIG 74
I +D GTK G+AISDP A + R++ + T + T + ++G
Sbjct: 2 RILGLDFGTKTTGVAISDPMGWTAQGLEIIRRQEDEHLKATMKRIEEICTAYKVEKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN + G R T F + + K+ +P WDERL+TV+A+Q+L++ ++SRKKR
Sbjct: 62 LPKNMNNTLGERGEKTLLFKEKL-ENKLKIPVETWDERLSTVAAEQVLLEADMSRKKRKN 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 121 VIDKLAATIILQNYLD 136
>gi|315500169|ref|YP_004088972.1| holliday junction resolvase yqgf [Asticcacaulis excentricus CB 48]
gi|315418181|gb|ADU14821.1| Holliday junction resolvase YqgF [Asticcacaulis excentricus CB 48]
Length = 167
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 11/164 (6%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL I +L +L P + + +DLG K IG+A+SD P + + K TQ A LL
Sbjct: 1 MAILDITELKAALPPRRALIGLDLGEKTIGVAVSDISLSIGSPLELIKKSKFTQEAERLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID----------RKVYVPFVFWD 110
+ + +IGLP+NM+G+EGPR S RAF N++ + +P FWD
Sbjct: 61 LLMKQREASGLVIGLPVNMDGTEGPRCQSVRAFARNLLRLPAEKFAAAGLEPDLPIAFWD 120
Query: 111 ERLTTVSAQQILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
ER ++ + LI + +++R KR + +D AAA ILQ LDRI
Sbjct: 121 ERWSSSVMNRFLIEEADLTRAKRAEVIDRSAAAYILQGALDRIR 164
>gi|160947667|ref|ZP_02094834.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270]
gi|158446801|gb|EDP23796.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270]
Length = 148
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 53/138 (38%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
++D+G + IG+A+SDP A + R+ + + L + I ENI ++GLP
Sbjct: 10 RYMALDVGDRTIGVAVSDPLFIMAEGYSTIFRESIEKDLESLKNIIVKENIIKVVVGLPK 69
Query: 78 NMNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
NMN + GP+ +FV + + V DERLTTVSA++ILI+ N+SRKKR
Sbjct: 70 NMNNTIGPQGEKVLSFVDELKDFLVKNSFDIEIVMQDERLTTVSAERILIEGNMSRKKRK 129
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA ILQ LDR
Sbjct: 130 KVIDKVAATYILQSYLDR 147
>gi|115375305|ref|ZP_01462569.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|310823720|ref|YP_003956078.1| holliday junction resolvase [Stigmatella aurantiaca DW4/3-1]
gi|115367678|gb|EAU66649.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|309396792|gb|ADO74251.1| Holliday junction resolvase [Stigmatella aurantiaca DW4/3-1]
Length = 150
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLGTK IG+A+SD A + R + L + ++GLPL
Sbjct: 2 RTLGLDLGTKTIGVAVSDGLGLTAQALTTVRRTNLKADLAALAELAREHEASRIVLGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSEGPR ++R F + + +++P FWDERL+TV+A++ L++ +++R KR Q +D
Sbjct: 62 NMDGSEGPRAEASRKFADAL-GQALHLPVEFWDERLSTVAAERTLLEADLTRAKRKQVID 120
Query: 138 SIAAALILQEVLD 150
+AA ILQ LD
Sbjct: 121 QMAAQFILQGWLD 133
>gi|89895164|ref|YP_518651.1| hypothetical protein DSY2418 [Desulfitobacterium hafniense Y51]
gi|219669581|ref|YP_002460016.1| Holliday junction resolvase-like protein [Desulfitobacterium
hafniense DCB-2]
gi|146325570|sp|Q24UT5|RUVX_DESHY RecName: Full=Putative Holliday junction resolvase
gi|254767513|sp|B8FQB9|RUVX_DESHD RecName: Full=Putative Holliday junction resolvase
gi|89334612|dbj|BAE84207.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539841|gb|ACL21580.1| Holliday junction resolvase YqgF [Desulfitobacterium hafniense
DCB-2]
Length = 142
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D G + IG+A+SD A + R + EL + + + ++G P
Sbjct: 2 RIMGLDFGERTIGVAVSDAMLLTAQGVKTIRRS--PKELEELKTMLQDYEVDHIVLGYPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR +T F ++ + +P WDERL+T+ AQ+ L++ +VSR KR Q +D
Sbjct: 60 NMNGTLGPRAQATEEFAQ-ILKEEFGLPVTLWDERLSTMGAQRSLLEADVSRAKRKQVID 118
Query: 138 SIAAALILQEVLDRIS 153
+AA ILQ LD I
Sbjct: 119 KMAAVFILQGYLDYIR 134
>gi|332523405|ref|ZP_08399657.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str.
Jelinkova 176]
gi|332314669|gb|EGJ27654.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str.
Jelinkova 176]
Length = 139
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + Q L + +++ F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDNQAFGFDRLSELVAQYDVSQFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ I +P V+ DERLTTV A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGQK-IQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|288555385|ref|YP_003427320.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4]
gi|288546545|gb|ADC50428.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4]
Length = 139
Score = 178 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIGLPL 77
+D+GTK +G+A+SD A L R + L++ ++ +IGLP
Sbjct: 4 LGLDVGTKTVGIALSDELGWTAQGIETLRRNEEDPESDFLKIAELAKQNDVETIVIGLPK 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP F ++ V FV WDERLTTV+A+++L+ +VSRKKR + +D
Sbjct: 64 NMNGTIGPSGERCMEFADSL-KEHVDCEFVMWDERLTTVAAERMLVSADVSRKKRKKVID 122
Query: 138 SIAAALILQEVLDR 151
+AA +ILQ LDR
Sbjct: 123 KMAAVMILQGYLDR 136
>gi|326803430|ref|YP_004321248.1| RNAse H domain protein, YqgF family [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651353|gb|AEA01536.1| RNAse H domain protein, YqgF family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 140
Score = 178 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + L I + +IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPFGWTAQGIETIKIDEEAGKFGFSRLRQLIEDYQVEKIVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN +EGPR ++R + +M +P + DERLTT +++ LI+ +VSRKKR +
Sbjct: 62 PKNMNNTEGPRAEASRHYG-DMAIELFDLPVFYQDERLTTQQSERFLIEAADVSRKKRKK 120
Query: 135 KVDSIAAALILQEVLDRISF 154
+D +AA LILQ LD S
Sbjct: 121 VIDKLAAVLILQNYLDSHSH 140
>gi|229822860|ref|ZP_04448930.1| hypothetical protein GCWU000282_00149 [Catonella morbi ATCC 51271]
gi|229787673|gb|EEP23787.1| hypothetical protein GCWU000282_00149 [Catonella morbi ATCC 51271]
Length = 142
Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
+ I +D+G+K +G+A+SD A + + LL + + +IG
Sbjct: 3 KRIMGLDVGSKTVGVAVSDLMGWTAQGLETIRIDEAAGDLGYDRLLELVDQHQVKELVIG 62
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133
LP NMN S GPR ++ A+ + + + + DERLTT A+++L+ + NVSRKKR
Sbjct: 63 LPKNMNNSLGPRAEASMAYGEGISKLRPELTIHYQDERLTTSQAERMLVTEGNVSRKKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
Q +D +AA +ILQ LDRI+
Sbjct: 123 QVIDKLAAVIILQNYLDRIN 142
>gi|217976928|ref|YP_002361075.1| Holliday junction resolvase-like protein [Methylocella silvestris
BL2]
gi|254767519|sp|B8EPC5|RUVX_METSB RecName: Full=Putative Holliday junction resolvase
gi|217502304|gb|ACK49713.1| Holliday junction resolvase YqgF [Methylocella silvestris BL2]
Length = 161
Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
IL + DL + P Q + IDLGTK IGLA+SD RR A P + R K ++ A+ L+
Sbjct: 5 ILEVADLPARVGPRQRLIGIDLGTKTIGLALSDVERRIATPLETIQRIKFSKDAVRLIEL 64
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ A IIGLPLNM+GS+GPRV +TRAFV ++ V PFV+WDERL+T + + L
Sbjct: 65 AEKFDAGALIIGLPLNMDGSQGPRVQATRAFVRSL-SALVSKPFVYWDERLSTAAVTRSL 123
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
ID +VSR KR + VD +AAA ILQ VLDR+ +E+
Sbjct: 124 IDQDVSRLKRAEVVDKMAAAYILQGVLDRLRRIEADA 160
>gi|313890363|ref|ZP_07823994.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
SPIN 20026]
gi|313121206|gb|EFR44314.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
SPIN 20026]
Length = 139
Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + Q L + ++ F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEANQAFGFDRLSELVAQYKVSQFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ I +P V+ DERLTTV A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGQK-IQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|157151461|ref|YP_001451289.1| Holliday junction resolvase-like protein [Streptococcus gordonii
str. Challis substr. CH1]
gi|189046109|sp|A8AZS9|RUVX_STRGC RecName: Full=Putative Holliday junction resolvase
gi|157076255|gb|ABV10938.1| conserved hypothetical protein TIGR00250 [Streptococcus gordonii
str. Challis substr. CH1]
Length = 139
Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ +VSR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGAKVTE-LFGLPVEYQDERLTTVAAERMLIEQADVSRNKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|227498473|ref|ZP_03928619.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226903931|gb|EEH89849.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 138
Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 75/136 (55%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +DLGT+ IG+A+SD A + R L + E + AF++G P
Sbjct: 2 RIMGLDLGTRTIGVAVSDEMGLIARGIETIRRSGTKNDLARLHELVQKEEVGAFVLGYPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ G R ++ AF + WDERL+TV+A+++LID +++RKKR + +D
Sbjct: 62 NMNGTIGERGKASEAFSKLLQTEFPDAKITLWDERLSTVAAEKVLIDADLTRKKRKKVID 121
Query: 138 SIAAALILQEVLDRIS 153
+AA +ILQ LD +
Sbjct: 122 MMAAVVILQNYLDSLR 137
>gi|319651656|ref|ZP_08005783.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2]
gi|317396723|gb|EFV77434.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2]
Length = 135
Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 79/134 (58%), Gaps = 3/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+A+SD A + + + + I ++ ++GLP
Sbjct: 1 MGLDVGSKTVGVALSDAFGWTAQGLETIKISEEEKEFGFERISEIIKEHEVSKIVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR +++ + + ++ +P V WDERL+T++A+++L++ +VSRKKR + +D
Sbjct: 61 NMNGTIGPRGEASQFYASEL-EKLFGLPVVLWDERLSTMAAERVLLEADVSRKKRKKVID 119
Query: 138 SIAAALILQEVLDR 151
+AA +ILQ L+
Sbjct: 120 KMAAVMILQGFLNS 133
>gi|195978958|ref|YP_002124202.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195975663|gb|ACG63189.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 136
Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 4/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + Q L + + F+IGLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKINEDKQDFGFDRLAELVKQYQVDRFVIGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ I+ ++P + DERLTTV A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASKAYGDR-IEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKKVI 119
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 120 DKLAAQLILQNYLD 133
>gi|313888091|ref|ZP_07821765.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845781|gb|EFR33168.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 138
Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G IG+AISD A P + R+ ++ I N+ ++GLP
Sbjct: 3 KILGLDVGDVWIGVAISDALMLTAQPLMTIKRESNKIAYEKIHEIIKENNVEKVVVGLPK 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GP+ F + ++ V + DER+TT+ A+Q+LI+ +V R+ R + +D
Sbjct: 63 NMNNTIGPQSEKVIKFAEKLKNK-FKVEIEYVDERMTTLMAEQVLIEGSVRRENRKKYID 121
Query: 138 SIAAALILQEVLDRIS 153
IAA ILQ LDRI+
Sbjct: 122 KIAATYILQSYLDRIN 137
>gi|327467925|gb|EGF13415.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK330]
Length = 139
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + +K L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ +VSR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADVSRSKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|55821927|ref|YP_140369.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus LMG 18311]
gi|55823846|ref|YP_142287.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus CNRZ1066]
gi|62900908|sp|Q5LXP0|RUVX_STRT1 RecName: Full=Putative Holliday junction resolvase
gi|62900909|sp|Q5M292|RUVX_STRT2 RecName: Full=Putative Holliday junction resolvase
gi|55737912|gb|AAV61554.1| DNA recombination protein, putative [Streptococcus thermophilus LMG
18311]
gi|55739831|gb|AAV63472.1| DNA recombination protein, putative [Streptococcus thermophilus
CNRZ1066]
Length = 139
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISDP A + + + L + + F++GL
Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKINEEAKEFGFDRLGELVKEYQVDKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR +
Sbjct: 62 PKNMNNTEGPRVEASKAYGDK-IKEIFNLPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138
>gi|299822852|ref|ZP_07054738.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601]
gi|299816381|gb|EFI83619.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601]
Length = 138
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISD A + + + + ++ ++GL
Sbjct: 2 RVMGLDVGSKTVGVAISDALGWTAQGIETIAINEAAKQFGYDRVKELAQEYEVSKIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GPR S++ + + +++V +P V WDER+TT +A++ L++ +VSR KR +
Sbjct: 62 PKNMNNTLGPRAESSKKYAEVL-EKRVQLPVVLWDERMTTQAAERTLLEADVSRGKRKKV 120
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 121 IDKLAAVMILQSYLD 135
>gi|153815342|ref|ZP_01968010.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756]
gi|317501696|ref|ZP_07959887.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331088419|ref|ZP_08337334.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA]
gi|145847404|gb|EDK24322.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756]
gi|316896947|gb|EFV19027.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330408186|gb|EGG87674.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA]
Length = 145
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+AISD R A + RK K+ +T + I ++ ++G
Sbjct: 2 RIMGLDYGSKTVGVAISDALRLTAQAVETIERKEENKLRRTCARIEELIKKYDVEKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +MN G R + F M+ R+ + + WDERLTTV A++ LI+ NV R+ R +
Sbjct: 62 FPKHMNNDIGERAQQSMEFGE-MLKRRTGLEVILWDERLTTVEAERTLIESNVRRENRKK 120
Query: 135 KVDSIAAALILQEVLD 150
+D IAA ILQ LD
Sbjct: 121 HIDQIAAVFILQGYLD 136
>gi|114566022|ref|YP_753176.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|122318867|sp|Q0AZP9|RUVX_SYNWW RecName: Full=Putative Holliday junction resolvase
gi|114336957|gb|ABI67805.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 141
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +DLG KRIG+A SDP A L RK + + L + ++GLPL
Sbjct: 2 RIMGLDLGEKRIGIAFSDPMGWTAQGHSILQRKGLKKDLSYLQELCQEFQVEKIVLGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ T+ F + + + +P FWDERL++ SA+++L++ ++SRK+R + +D
Sbjct: 62 NMNGTMGPKALETQEFARALQEA-LKIPVDFWDERLSSKSAERVLLEADLSRKRRKELID 120
Query: 138 SIAAALILQEVLDRIS 153
IAA ILQ LD S
Sbjct: 121 KIAAVHILQAYLDGGS 136
>gi|329766971|ref|ZP_08258499.1| Holliday junction resolvase [Gemella haemolysans M341]
gi|328837696|gb|EGF87321.1| Holliday junction resolvase [Gemella haemolysans M341]
Length = 142
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73
++ I +D G+K IG+A+SD A + + + + + N+ ++
Sbjct: 3 DKRIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVQEHNVGKIVV 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR
Sbjct: 63 GLPKNMDNSVGFRGEATLFFVEVLKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D +AA LILQ LD+++
Sbjct: 123 DVIDKMAAVLILQTYLDKLN 142
>gi|170742466|ref|YP_001771121.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46]
gi|168196740|gb|ACA18687.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46]
Length = 168
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/144 (42%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + +DLGTK IGLA+SD GRR A P + R K T A L + + ++G
Sbjct: 17 GRRLLGLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDARRLAAIAAEHGVGGLVVGH 76
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSEGPR STRAFV N+ + +P + +DERL+T + + L++ + SR +R +
Sbjct: 77 PLNMDGSEGPRAQSTRAFVRNLAP-ILPLPVLLFDERLSTAAVTRTLLEADASRARRGKL 135
Query: 136 VDSIAAALILQEVLDRISFLESSK 159
VD +AAA ILQ LD ++ LE +
Sbjct: 136 VDKLAAAYILQGCLDVLAGLEPEE 159
>gi|317495258|ref|ZP_07953628.1| hypothetical protein HMPREF0432_00230 [Gemella moribillum M424]
gi|316914680|gb|EFV36156.1| hypothetical protein HMPREF0432_00230 [Gemella moribillum M424]
Length = 141
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73
++ I +D G+K IG+A+SD A + + + + + NI ++
Sbjct: 3 DKRIMGLDYGSKTIGVAVSDLLGMTAQGVETININEQVKDFKIKRIKELVNEYNIGKIVV 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR
Sbjct: 63 GLPKNMDNSIGFRGEATLYFVEVLKKKIKSVEVILQDERLTTMGAERVLLEANVSRKKRK 122
Query: 134 QKVDSIAAALILQEVLDR 151
+D +AA LILQ LD+
Sbjct: 123 DVIDKMAAVLILQTYLDK 140
>gi|328554357|gb|AEB24849.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens TA208]
gi|328912761|gb|AEB64357.1| Putative Holliday junction resolvase [Bacillus amyloliquefaciens
LL3]
Length = 138
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +DLGTK +G+A+SD A + + L + N+ ++G
Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGF 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR +
Sbjct: 62 PKNMNGTIGPRGEASQTFA-KLLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD ++
Sbjct: 121 IDKMAAVMILQGFLDSLN 138
>gi|138896124|ref|YP_001126577.1| hypothetical protein GTNG_2487 [Geobacillus thermodenitrificans
NG80-2]
gi|196250077|ref|ZP_03148771.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16]
gi|167012727|sp|A4IR78|RUVX_GEOTN RecName: Full=Putative Holliday junction resolvase
gi|134267637|gb|ABO67832.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
gi|196210261|gb|EDY05026.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16]
Length = 138
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
+DLGTK +G+A+SD A + + L + I + ++G
Sbjct: 2 RTLGLDLGTKTLGVAVSDEFGWTAQGLETIAIDEERGHYGFERLRAIIDEYGVDTIVVGW 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR ++ F + + +P V WDERL+T++A+++LI +VSRKKR +
Sbjct: 62 PKNMNGTLGPRAEASERFAAKLREE-FSLPVVLWDERLSTMAAERMLIAADVSRKKRRKV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AAA+ILQ LD
Sbjct: 121 IDKMAAAVILQSYLDSKR 138
>gi|205374237|ref|ZP_03227036.1| Holliday junction resolvase-like protein [Bacillus coahuilensis
m4-4]
Length = 138
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 77/136 (56%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+GT+ +G+A+SD A + + + + ++ ++GL
Sbjct: 2 RIMGLDVGTRTVGVAVSDAFGWTAQGIETIKIHEELGFLGYERIKELVKEYEVSKIVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GPR +++ + + ++ +P ++DERLTT+ A+++LI+ +VSR KR +
Sbjct: 62 PKNMNNTMGPRGEASQRYGEGLREK-FGIPVDYYDERLTTMQAERVLIEADVSRGKRKKV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LDR
Sbjct: 121 IDKMAAVMILQGYLDR 136
>gi|325262832|ref|ZP_08129568.1| putative Holliday junction resolvase [Clostridium sp. D5]
gi|324031926|gb|EGB93205.1| putative Holliday junction resolvase [Clostridium sp. D5]
Length = 148
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D GTK +G+AISD A + RK K+ +T + ++ + ++G
Sbjct: 2 RIMGLDYGTKTVGVAISDALGFTAQGIETIQRKEENKLRRTLARIEELVSEYEVEKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +MN G R + F +M+ R+ + + WDERLTTV A++ LI+ NV R+ R +
Sbjct: 62 FPKHMNNDIGERAEKSLEF-RDMLVRRTGLEVIMWDERLTTVEAERTLIESNVRRENRKK 120
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D IAA ILQ LD + +L+ G
Sbjct: 121 YIDKIAAIFILQGYLDSV-YLQRQAG 145
>gi|116628625|ref|YP_821244.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus LMD-9]
gi|122266781|sp|Q03IC4|RUVX_STRTD RecName: Full=Putative Holliday junction resolvase
gi|116101902|gb|ABJ67048.1| RNase H-like ribonuclease [Streptococcus thermophilus LMD-9]
gi|312279278|gb|ADQ63935.1| Holliday junction resolvase YqgF [Streptococcus thermophilus ND03]
Length = 139
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISDP A + + + L + + F++GL
Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKINEEAKEFGFDRLGELVKEYQVDKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR +
Sbjct: 62 PKNMNNTEGPRVEASKAYGDK-IKEIFNLPVDYQDERLTTVQAERMLVEQADVSRDKRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138
>gi|290581344|ref|YP_003485736.1| hypothetical protein SmuNN2025_1818 [Streptococcus mutans NN2025]
gi|254998243|dbj|BAH88844.1| hypothetical protein [Streptococcus mutans NN2025]
Length = 139
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+A+SDP A + + L + + F++GL
Sbjct: 2 RIIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFERLADLVKDYKVEKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGKK-IKELFDLPVEYQDERLTTVQAERMLVEQADVSRGKRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138
>gi|227529702|ref|ZP_03959751.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
ATCC 49540]
gi|227350368|gb|EEJ40659.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
ATCC 49540]
Length = 147
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A+SDP A + + + + + +A F++GL
Sbjct: 2 RLLGLDVGSKTVGIAVSDPLGWTAQAVEIIPINEDEEIFGIDRVAEIVKQRQVAGFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN +EGPRV ++ + + R +P F DERLTTV A ++L+ + ++SR K+ +
Sbjct: 62 PKNMNNTEGPRVEASHHYGELLKKRFPSIPVDFQDERLTTVEAHRMLVEEADISRAKQKK 121
Query: 135 KVDSIAAALILQEVLDRISFL 155
+D +AA ILQ LDR L
Sbjct: 122 VIDEVAATFILQSYLDRHGKL 142
>gi|322392530|ref|ZP_08065990.1| crossover junction endodeoxyribonuclease [Streptococcus peroris
ATCC 700780]
gi|321144522|gb|EFX39923.1| crossover junction endodeoxyribonuclease [Streptococcus peroris
ATCC 700780]
Length = 136
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 50/135 (37%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + Q L + + + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRLKELVESYKVEHFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ +VSR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EELFGLPVEYQDERLTTVAAERMLIEQADVSRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|325688814|gb|EGD30822.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK115]
Length = 139
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + +K L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRNKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|225574862|ref|ZP_03783472.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM
10507]
gi|225037936|gb|EEG48182.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM
10507]
Length = 152
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 4/145 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+A+SDP A + RK K+ QT + + I + ++G
Sbjct: 2 RILGLDFGSKTVGVAVSDPLGLTAQGVEIIRRKSENKLRQTLARIEALIQEYEVETLVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN + G R + F +M+ R+ +P V WDERLTTV A + L++ V R+ R
Sbjct: 62 LPKNMNNTMGDRAQKSLEF-RDMLVRRTGLPVVMWDERLTTVEANRTLMESGVRRENRKD 120
Query: 135 KVDSIAAALILQEVLDRISFLESSK 159
VD +AA ILQ LD + +
Sbjct: 121 YVDELAAIFILQGYLDAQRIRKEME 145
>gi|24380413|ref|NP_722368.1| Holliday junction resolvase-like protein [Streptococcus mutans
UA159]
gi|32130029|sp|Q8DRX8|RUVX_STRMU RecName: Full=Putative Holliday junction resolvase
gi|24378438|gb|AAN59674.1|AE015030_4 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 139
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+A+SDP A + + L + + F++GL
Sbjct: 2 RIIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFDRLADLVKDYKVEKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGKK-IKELFDLPVEYQDERLTTVQAERMLVEQADVSRGKRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138
>gi|332360144|gb|EGJ37958.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1056]
Length = 139
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + +K L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLSELVKEYKVDKFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|78044200|ref|YP_359400.1| hypothetical protein CHY_0542 [Carboxydothermus hydrogenoformans
Z-2901]
gi|146325559|sp|Q3AEN4|RUVX_CARHZ RecName: Full=Putative Holliday junction resolvase
gi|77996315|gb|ABB15214.1| conserved hypothetical protein TIGR00250 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 138
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D+G K+IG+A+SD A + R + + E+ I ++ +IG P
Sbjct: 2 KVLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR + F + + VFWDERL+TV A+++LI ++SR+KR + +D
Sbjct: 62 NMNGTAGPRAELVKRFARELYK-FTGIKPVFWDERLSTVEAEKLLISGDISRRKRKKVID 120
Query: 138 SIAAALILQEVLDRIS 153
+AA LIL L+ S
Sbjct: 121 KLAATLILSGYLNYKS 136
>gi|25012082|ref|NP_736477.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
NEM316]
gi|54039588|sp|P67493|RUVX_STRA5 RecName: Full=Putative Holliday junction resolvase
gi|54042292|sp|P67492|RUVX_STRA3 RecName: Full=Putative Holliday junction resolvase
gi|118597222|sp|Q3JYN4|RUVX_STRA1 RecName: Full=Putative Holliday junction resolvase
gi|24413626|emb|CAD47703.1| Unknown [Streptococcus agalactiae NEM316]
Length = 139
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + L + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV A+++L++ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGDKITE-LFNLPVEYQDERLTTVQAERMLVEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138
>gi|296875599|ref|ZP_06899670.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 15912]
gi|296433396|gb|EFH19172.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 15912]
Length = 139
Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K +G+A+SDP A + + + L + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ MI K +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGT-MIAEKFGLPVDYQDERLTTVAAERMLIEQADISRSKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|39936176|ref|NP_948452.1| Holliday junction resolvase-like protein [Rhodopseudomonas
palustris CGA009]
gi|192291893|ref|YP_001992498.1| Holliday junction resolvase-like protein [Rhodopseudomonas
palustris TIE-1]
gi|62900984|sp|Q6N569|RUVX_RHOPA RecName: Full=Putative Holliday junction resolvase
gi|226731645|sp|B3Q9X0|RUVX_RHOPT RecName: Full=Putative Holliday junction resolvase
gi|39650031|emb|CAE28554.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
gi|192285642|gb|ACF02023.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris TIE-1]
Length = 160
Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
IL + + + +DLGTK IG+A SDP R+ A + RK T A LL+
Sbjct: 5 ILPLIEAAVHWPVRGALLGLDLGTKTIGVAASDPDRKLATGVETIARKAFTADAARLLAL 64
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
F++GLPLNM+GSEGPR STRAF N+ R +P WDERL+T + ++ L
Sbjct: 65 AAERTACGFVLGLPLNMDGSEGPRAQSTRAFARNL-SRLTELPIGLWDERLSTAAVEREL 123
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
I +VSR KR + +D AA ILQ LDR++ L ++
Sbjct: 124 IANDVSRAKRAKVIDEHAAIFILQGALDRLAALRRAE 160
>gi|320529130|ref|ZP_08030222.1| conserved hypothetical protein TIGR00250 [Selenomonas artemidis
F0399]
gi|320138760|gb|EFW30650.1| conserved hypothetical protein TIGR00250 [Selenomonas artemidis
F0399]
Length = 138
Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 73/138 (52%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+G IG+A+SD A + R + L + + + A + GLP +M
Sbjct: 1 MSLDIGDVTIGIAVSDLLGLTAQGVETIRRTTLAADFERLSTLMRDYEVDALVAGLPKHM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG EG R RAF+ V +WDERL+TV+A + L++ +VSRKKR + +D +
Sbjct: 61 NGDEGTRCEMVRAFMAEAAQCFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRRKVIDKM 120
Query: 140 AAALILQEVLDRISFLES 157
AA ILQ LDR L +
Sbjct: 121 AAVYILQGFLDRQRNLHT 138
>gi|322386556|ref|ZP_08060183.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
ATCC 51100]
gi|321269475|gb|EFX52408.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
ATCC 51100]
Length = 139
Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + L + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKEQFGFERLTELVEQYKVDKFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ +VSR KR +
Sbjct: 62 PKNMNNTSGPRVEASKAYGEKIA-QLFQIPVEYQDERLTTVAAERMLIEQADVSRSKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|322375055|ref|ZP_08049569.1| putative Holliday junction resolvase [Streptococcus sp. C300]
gi|321280555|gb|EFX57594.1| putative Holliday junction resolvase [Streptococcus sp. C300]
Length = 139
Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + Q + + + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIHINEDQGQFGFDRIKELVDSYKVERFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|312898887|ref|ZP_07758275.1| conserved hypothetical protein TIGR00250 [Megasphaera
micronuciformis F0359]
gi|310620049|gb|EFQ03621.1| conserved hypothetical protein TIGR00250 [Megasphaera
micronuciformis F0359]
Length = 138
Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 66/133 (49%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G+K IG+A SD A L R+ + L L + + ++G P
Sbjct: 2 RILGLDVGSKTIGVACSDALLLTAQAVGTLKRQSRRKDCLALADICKEKEVHRIVVGKPS 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+MNG + FV + V+WDERLTTV AQ+ L++ V R+KR VD
Sbjct: 62 HMNGDKSANTEKIEQFVEKLKKTVPQTEIVWWDERLTTVMAQRQLMEAGVRREKRKAVVD 121
Query: 138 SIAAALILQEVLD 150
+IAA ILQ LD
Sbjct: 122 TIAAVFILQNYLD 134
>gi|125719019|ref|YP_001036152.1| Holliday junction resolvase-like protein [Streptococcus sanguinis
SK36]
gi|167016514|sp|A3CQZ7|RUVX_STRSV RecName: Full=Putative Holliday junction resolvase
gi|125498936|gb|ABN45602.1| Holliday junction resolvase, putative [Streptococcus sanguinis
SK36]
Length = 139
Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + +K L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|322374034|ref|ZP_08048568.1| putative Holliday junction resolvase [Streptococcus sp. C150]
gi|321277000|gb|EFX54071.1| putative Holliday junction resolvase [Streptococcus sp. C150]
Length = 139
Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISDP A + + + L + + F++GL
Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVDKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN +EGPRV +++A+ + I +P + DERLTTV A+++L++ +VSR KR +
Sbjct: 62 PKNMNNTEGPRVEASKAYGNK-IKEIFGIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138
>gi|328944731|gb|EGG38892.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1087]
Length = 139
Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + +K L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGGFGLERLGELVKEYKVDKFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|324992637|gb|EGC24558.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK405]
gi|324995834|gb|EGC27745.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK678]
gi|325695338|gb|EGD37238.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK150]
gi|327460040|gb|EGF06379.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1]
gi|327463467|gb|EGF09786.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1057]
gi|327472186|gb|EGF17623.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK408]
gi|327488630|gb|EGF20430.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1058]
Length = 139
Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + +K L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|15902220|ref|NP_357770.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
R6]
gi|116515819|ref|YP_815700.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
D39]
gi|148983593|ref|ZP_01816912.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae
SP3-BS71]
gi|148987930|ref|ZP_01819393.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae
SP6-BS73]
gi|148992772|ref|ZP_01822415.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae
SP9-BS68]
gi|148996617|ref|ZP_01824335.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae
SP11-BS70]
gi|149001702|ref|ZP_01826675.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
pneumoniae SP14-BS69]
gi|149005945|ref|ZP_01829674.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae
SP18-BS74]
gi|149011064|ref|ZP_01832369.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae
SP19-BS75]
gi|168483832|ref|ZP_02708784.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gi|168490343|ref|ZP_02714542.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
gi|168492149|ref|ZP_02716292.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC0288-04]
gi|168576377|ref|ZP_02722260.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
gi|169834458|ref|YP_001693728.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
Hungary19A-6]
gi|182683176|ref|YP_001834923.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14]
gi|225853803|ref|YP_002735315.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
JJA]
gi|225855961|ref|YP_002737472.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
P1031]
gi|225858051|ref|YP_002739561.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
70585]
gi|225860238|ref|YP_002741747.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|237649736|ref|ZP_04523988.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
CCRI 1974]
gi|237821434|ref|ZP_04597279.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
CCRI 1974M2]
gi|298255974|ref|ZP_06979560.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
str. Canada MDR_19A]
gi|303255107|ref|ZP_07341183.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
BS455]
gi|303259248|ref|ZP_07345226.1| hypothetical protein CGSSp9vBS293_02607 [Streptococcus pneumoniae
SP-BS293]
gi|303263331|ref|ZP_07349254.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae
BS397]
gi|307066873|ref|YP_003875839.1| putative endonuclease [Streptococcus pneumoniae AP200]
gi|32130028|sp|Q8DRE2|RUVX_STRR6 RecName: Full=Putative Holliday junction resolvase
gi|122279414|sp|Q04MP8|RUVX_STRP2 RecName: Full=Putative Holliday junction resolvase
gi|226695306|sp|B1I8I5|RUVX_STRPI RecName: Full=Putative Holliday junction resolvase
gi|226695307|sp|B2IS28|RUVX_STRPS RecName: Full=Putative Holliday junction resolvase
gi|254767527|sp|C1CAK0|RUVX_STRP7 RecName: Full=Putative Holliday junction resolvase
gi|254767529|sp|C1CBZ4|RUVX_STRZJ RecName: Full=Putative Holliday junction resolvase
gi|254767530|sp|C1CI84|RUVX_STRZP RecName: Full=Putative Holliday junction resolvase
gi|254767531|sp|C1CP75|RUVX_STRZT RecName: Full=Putative Holliday junction resolvase
gi|15457719|gb|AAK98980.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076395|gb|ABJ54115.1| conserved hypothetical protein TIGR00250 [Streptococcus pneumoniae
D39]
gi|147757192|gb|EDK64231.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae
SP11-BS70]
gi|147760160|gb|EDK67149.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
pneumoniae SP14-BS69]
gi|147762301|gb|EDK69262.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae
SP18-BS74]
gi|147764700|gb|EDK71630.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae
SP19-BS75]
gi|147923740|gb|EDK74852.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae
SP3-BS71]
gi|147926394|gb|EDK77467.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae
SP6-BS73]
gi|147928498|gb|EDK79513.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae
SP9-BS68]
gi|168996960|gb|ACA37572.1| conserved hypothetical protein [Streptococcus pneumoniae
Hungary19A-6]
gi|172042909|gb|EDT50955.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gi|182628510|gb|ACB89458.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14]
gi|183571311|gb|EDT91839.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
gi|183573647|gb|EDT94175.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC0288-04]
gi|183577826|gb|EDT98354.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
gi|225721840|gb|ACO17694.1| conserved hypothetical protein [Streptococcus pneumoniae 70585]
gi|225722223|gb|ACO18076.1| conserved hypothetical protein [Streptococcus pneumoniae JJA]
gi|225725306|gb|ACO21158.1| conserved hypothetical protein [Streptococcus pneumoniae P1031]
gi|225727488|gb|ACO23339.1| conserved hypothetical protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|302597937|gb|EFL65007.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
BS455]
gi|302639666|gb|EFL70123.1| hypothetical protein CGSSpBS293_02607 [Streptococcus pneumoniae
SP-BS293]
gi|302647104|gb|EFL77328.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae
BS397]
gi|306408410|gb|ADM83837.1| predicted endonuclease [Streptococcus pneumoniae AP200]
Length = 139
Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + ++ Q + + T + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|323350688|ref|ZP_08086349.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
VMC66]
gi|322123108|gb|EFX94799.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
VMC66]
gi|325686737|gb|EGD28763.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK72]
gi|332363719|gb|EGJ41499.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK49]
gi|332365296|gb|EGJ43059.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1059]
Length = 139
Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + +K L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRVSE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|320547640|ref|ZP_08041925.1| crossover junction endodeoxyribonuclease [Streptococcus equinus
ATCC 9812]
gi|320447715|gb|EFW88473.1| crossover junction endodeoxyribonuclease [Streptococcus equinus
ATCC 9812]
Length = 139
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + L + N+ F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGVEIIQIDEEAGEFGFERLGELVKQYNVDKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR +
Sbjct: 62 PKNMNNTEGPRVEASKAYGDQ-IKELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138
>gi|296333169|ref|ZP_06875622.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675325|ref|YP_003866997.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296149367|gb|EFG90263.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413569|gb|ADM38688.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 138
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +DLGTK +G+A+SD A + + L I I ++G
Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKEYTIDKIVLGF 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR +++ F + + VP V WDERLTT++A+++LI +VSR+KR +
Sbjct: 62 PKNMNGTVGPRGEASQTFAKVL-ETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD ++
Sbjct: 121 IDKMAAVMILQGYLDSLN 138
>gi|291618771|ref|YP_003521513.1| YqgF [Pantoea ananatis LMG 20103]
gi|291153801|gb|ADD78385.1| YqgF [Pantoea ananatis LMG 20103]
gi|327395104|dbj|BAK12526.1| putative Holliday junction resolvase YqgF [Pantoea ananatis
AJ13355]
Length = 138
Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D GTK IG+A+ A P + + T L++ + ++GLP
Sbjct: 4 QTLLGFDFGTKSIGVAVGQQLTGSARPLSAIKAQDGTPDWLQIEKLLKEWQPDFVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P R F + + R + DERL+TV A+ L + R V
Sbjct: 64 LNMDGTEQPLTARARKFANRLHGR-FGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122
Query: 137 DSIAAALILQEVLD 150
DS +AA+ILQ+ +
Sbjct: 123 DSQSAAIILQDWFE 136
>gi|56421089|ref|YP_148407.1| hypothetical protein GK2554 [Geobacillus kaustophilus HTA426]
gi|261418430|ref|YP_003252112.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61]
gi|297529282|ref|YP_003670557.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3]
gi|319767610|ref|YP_004133111.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52]
gi|62900906|sp|Q5KWU7|RUVX_GEOKA RecName: Full=Putative Holliday junction resolvase
gi|56380931|dbj|BAD76839.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|261374887|gb|ACX77630.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61]
gi|297252534|gb|ADI25980.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3]
gi|317112476|gb|ADU94968.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52]
Length = 138
Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
+DLGTK +G+A+SD A + L + I + ++G
Sbjct: 2 RTLGLDLGTKTLGVAVSDELGLTAQGLETIAIDTERGDYGLKRLRAIIDEYGVDTIVVGW 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR ++ F + + +P V WDERL+T++A+++LI +VSRKKR +
Sbjct: 62 PKNMNGTLGPRAEASERFAAKLREE-FSLPVVLWDERLSTMAAERMLIAADVSRKKRRKV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AAA+ILQ LD
Sbjct: 121 IDKMAAAVILQSYLDSKR 138
>gi|259502866|ref|ZP_05745768.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259169233|gb|EEW53728.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 147
Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A+SDP A + + + + + E +A F++GL
Sbjct: 2 RLLGLDVGSKTVGVAVSDPLGWTAQAVEIIPIDEDAEVFGLDRVAELVHKEQVAGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN +EGPRV +++ + + +R +P F DERLTTV A ++L+ + ++SR K+ +
Sbjct: 62 PKNMNNTEGPRVAASKHYGELLQERFPQLPIDFQDERLTTVEAHRMLVEEADISRAKQKK 121
Query: 135 KVDSIAAALILQEVLDRISFL 155
+D +AA ILQ LDR L
Sbjct: 122 VIDEVAATFILQSYLDRHGRL 142
>gi|121535968|ref|ZP_01667762.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1]
gi|121305460|gb|EAX46408.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1]
Length = 140
Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 68/136 (50%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D+G K IG A+SD A + R + I+GLP
Sbjct: 2 RILALDVGEKTIGAAVSDELLLTAQGVEVIRRMSPEADMARIRELAEHFEATVIIVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GP+ +AF + + + WDERL+TV+A++ LI +V R KR Q +D
Sbjct: 62 NMNGTIGPQGEKVKAFASELQNYLAGIEVRLWDERLSTVAAERSLIAADVRRAKRRQVID 121
Query: 138 SIAAALILQEVLDRIS 153
+AA ILQ LD +S
Sbjct: 122 KMAAVFILQGYLDSLS 137
>gi|329770531|ref|ZP_08261909.1| Holliday junction resolvase [Gemella sanguinis M325]
gi|328836280|gb|EGF85949.1| Holliday junction resolvase [Gemella sanguinis M325]
Length = 142
Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFII 73
+ I +D G+K IG+A+SD A + + + + + N+ I+
Sbjct: 3 EKRIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVNEHNVGKIIV 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR
Sbjct: 63 GLPKNMDNSIGFRGEATLYFVEVLKKKIKSVEIILQDERLTTMGAERVLLEANVSRKKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D +AA LILQ LD+++
Sbjct: 123 NVIDKMAAVLILQTYLDKLN 142
>gi|324989653|gb|EGC21597.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK353]
Length = 139
Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + K L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRIAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|325697277|gb|EGD39163.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK160]
Length = 139
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + K L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|270291980|ref|ZP_06198195.1| putative Holliday junction resolvase [Streptococcus sp. M143]
gi|270279508|gb|EFA25350.1| putative Holliday junction resolvase [Streptococcus sp. M143]
Length = 139
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + Q + + + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|312866891|ref|ZP_07727104.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0405]
gi|311097674|gb|EFQ55905.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0405]
Length = 139
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K +G+A+SDP A + + + L + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKREFGLERLAELVAQYKVDRFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ MI K +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGT-MIAEKFGLPVDYQDERLTTVAAERMLIEQADISRSKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|288906372|ref|YP_003431594.1| hypothetical protein GALLO_2188 [Streptococcus gallolyticus UCN34]
gi|306832418|ref|ZP_07465571.1| crossover junction endodeoxyribonuclease [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325979385|ref|YP_004289101.1| putative holliday junction resolvase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|288733098|emb|CBI14679.1| Conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304425458|gb|EFM28577.1| crossover junction endodeoxyribonuclease [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325179313|emb|CBZ49357.1| putative holliday junction resolvase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 139
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + L + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLEELVKQYKVDKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN +EGPRV +++A+ I+ +P + DERLTTV A+++L++ +VSR KR +
Sbjct: 62 PKNMNNTEGPRVEASKAYGDK-INELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138
>gi|56551681|ref|YP_162520.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241761198|ref|ZP_04759286.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|260752737|ref|YP_003225630.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|56543255|gb|AAV89409.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241374105|gb|EER63602.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|258552100|gb|ACV75046.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 179
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 53/147 (36%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
++L +A +D+GTK IGLA+ D A P + RKK T L F+ + +
Sbjct: 35 FQEALPRKGRLAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFTLDLELLRQFVEKQQV 94
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+IGLPLN++GS+ PR S RAF N+ + +P + WDER +T + + L++ + S
Sbjct: 95 KGLVIGLPLNLDGSDSPRTQSVRAFAKNVA--PLSLPVLMWDERWSTKAVTRTLLEADAS 152
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFL 155
R +R + VD +AAA ILQ +D +
Sbjct: 153 RARRSEVVDKMAAAYILQGAIDSFAMF 179
>gi|157693142|ref|YP_001487604.1| Holliday junction resolvase-like protein [Bacillus pumilus
SAFR-032]
gi|194017226|ref|ZP_03055838.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
gi|167012693|sp|A8FFM7|RUVX_BACP2 RecName: Full=Putative Holliday junction resolvase
gi|157681900|gb|ABV63044.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Bacillus pumilus SAFR-032]
gi|194011094|gb|EDW20664.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
Length = 138
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGL 75
I +DLGTK +G+AISD A + + L ++ ++G
Sbjct: 2 RILGLDLGTKTLGVAISDEMGWTAQGIETIKIDEAGGDFGLSRLSEIVSQYGTDKIVLGF 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR ++++F + + VP V WDERL+T++A+++LI +VSR+KR +
Sbjct: 62 PKNMNGTVGPRGEASQSFAKVL-ENTYNVPVVLWDERLSTMAAEKMLISADVSRQKRKKV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD ++
Sbjct: 121 IDKMAAVMILQGYLDSLN 138
>gi|260583980|ref|ZP_05851728.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633]
gi|260158606|gb|EEW93674.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633]
Length = 140
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 82/136 (60%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISDP A +V + ++ + + +IG+
Sbjct: 2 RVMGLDVGSKTVGVAISDPLGWTAQGVETIVINEAASEFGFNRVVELVKEYEVEKIVIGM 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN + GPR +++ + ++ ++++ +P VF DERLTT+ A+++L+ + NVSRKKR +
Sbjct: 62 PKNMNNTAGPRAEASQKYGRSL-EKRLEIPIVFHDERLTTMQAERMLVEEANVSRKKRKE 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 121 VIDKLAAVIILQNYLD 136
>gi|296284265|ref|ZP_06862263.1| Holliday junction resolvase-like protein [Citromicrobium
bathyomarinum JL354]
Length = 162
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 58/142 (40%), Positives = 87/142 (61%), Gaps = 1/142 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
L ++L + +DLGTK IG+A+ D G RFA L R K + EL I +I
Sbjct: 14 LAETLPDGGALIGLDLGTKTIGIAVCDAGWRFASALKTLPRGKFGRDRDELRKLIEARSI 73
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+IGLP NM+GSEGPR ++RA+ N+ + +P + WDER +T SA+ +I ++VS
Sbjct: 74 RGIVIGLPRNMDGSEGPRAQASRAYARNLAEA-FGLPVLLWDERWSTKSAEDAMIGLDVS 132
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
R+KR +++D+ AA +ILQ +D
Sbjct: 133 RRKRAERIDAEAATIILQGAID 154
>gi|302391206|ref|YP_003827026.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM
5501]
gi|302203283|gb|ADL11961.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM
5501]
Length = 138
Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D G KRIG A SD A + + + E+ S I ++ ++GL
Sbjct: 1 MSRILGLDFGDKRIGAATSDALGWTAQGKKVIQNTSWEEVVAEINSLIEQYDVGKVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR T FV + + P + WDERL+T +A++ L+ +VSR KR
Sbjct: 61 PKNMNGTLGPRAEKTLDFVEQLKEEIEP-PIITWDERLSTAAAERTLLKADVSRAKRKDV 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD S
Sbjct: 120 IDKMAAVVILQSYLDAQS 137
>gi|188586393|ref|YP_001917938.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|226731632|sp|B2A5J5|RUVX_NATTJ RecName: Full=Putative Holliday junction resolvase
gi|179351080|gb|ACB85350.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 141
Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats.
Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I DLG IG+A+SD + A + + R+ + + ++ I ++ I+GLP
Sbjct: 2 RIMGFDLGEATIGVAVSDALQLTAQGKTVIKRQSLEKDIEQVTKLIEDYQVSKLIVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNGS G F+ ++ +++V +P DERLT+ A+Q L++ +VSRKKR Q +D
Sbjct: 62 NMNGSLGQMADQIMDFIKSL-EQEVDIPIETVDERLTSRMAEQTLLEADVSRKKRKQVID 120
Query: 138 SIAAALILQEVLDR 151
+AA ILQ LDR
Sbjct: 121 KLAAVNILQTYLDR 134
>gi|322390444|ref|ZP_08063964.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 903]
gi|321142843|gb|EFX38301.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 903]
Length = 139
Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K +G+A+SDP A + + + L + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ MI K +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGA-MIAEKFGMPVDYQDERLTTVAAERMLIEQADISRSKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|146317727|ref|YP_001197439.1| Holliday junction resolvase-like protein [Streptococcus suis
05ZYH33]
gi|146319916|ref|YP_001199627.1| Holliday junction resolvase-like protein [Streptococcus suis
98HAH33]
gi|223934259|ref|ZP_03626188.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
gi|253750983|ref|YP_003024124.1| Holliday junction resolvase [Streptococcus suis SC84]
gi|253752883|ref|YP_003026023.1| Holliday junction resolvase [Streptococcus suis P1/7]
gi|253754708|ref|YP_003027848.1| Holliday junction resolvase [Streptococcus suis BM407]
gi|167016513|sp|A4VYN8|RUVX_STRS2 RecName: Full=Putative Holliday junction resolvase
gi|167016515|sp|A4VSF0|RUVX_STRSY RecName: Full=Putative Holliday junction resolvase
gi|145688533|gb|ABP89039.1| Unknown protein [Streptococcus suis 05ZYH33]
gi|145690722|gb|ABP91227.1| unknown protein [Streptococcus suis 98HAH33]
gi|223897073|gb|EEF63505.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
gi|251815272|emb|CAZ50837.1| putative Holliday junction resolvase [Streptococcus suis SC84]
gi|251817172|emb|CAZ54893.1| putative Holliday junction resolvase [Streptococcus suis BM407]
gi|251819128|emb|CAR44214.1| putative Holliday junction resolvase [Streptococcus suis P1/7]
gi|292557526|gb|ADE30527.1| Resolvase, holliday junction-type, YqgF-like protein [Streptococcus
suis GZ1]
Length = 139
Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + +K L + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ +++ + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYG-DLLTERYKLPVDYQDERLTTVAAERMLIEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|307708049|ref|ZP_07644517.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
gi|322377241|ref|ZP_08051733.1| putative Holliday junction resolvase [Streptococcus sp. M334]
gi|307615834|gb|EFN95039.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
gi|321281954|gb|EFX58962.1| putative Holliday junction resolvase [Streptococcus sp. M334]
Length = 139
Score = 176 bits (448), Expect = 9e-43, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + ++ Q + + T + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|239637577|ref|ZP_04678549.1| conserved hypothetical protein [Staphylococcus warneri L37603]
gi|239596795|gb|EEQ79320.1| conserved hypothetical protein [Staphylococcus warneri L37603]
Length = 142
Score = 176 bits (448), Expect = 9e-43, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L + +L+ I + +I
Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIEQLVEIIKQHGVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAEKSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD IS
Sbjct: 123 KVIDKMAAVFILQGYLDSIS 142
>gi|260881084|ref|ZP_05403565.2| putative holliday junction resolvase [Mitsuokella multacida DSM
20544]
gi|260849464|gb|EEX69471.1| putative holliday junction resolvase [Mitsuokella multacida DSM
20544]
Length = 138
Score = 176 bits (448), Expect = 9e-43, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 72/138 (52%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ S+D+G + IG+A+SD A + RK + L + + + GL
Sbjct: 1 MKRYMSLDIGDRTIGIAVSDLLGLTAQGVETIRRKSLADDLKRLGELMQAYETKSLVSGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+G+EG R + F+ + V FWDERL+TV+A + LI+ +VSR+KR +
Sbjct: 61 PKNMDGTEGDRCAIVKEFMAEVKKAYPDVEVFFWDERLSTVAATRSLIEADVSRRKRKKV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ LD
Sbjct: 121 IDKMAAVFILQGFLDSKR 138
>gi|16079793|ref|NP_390617.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. 168]
gi|221310675|ref|ZP_03592522.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314998|ref|ZP_03596803.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319919|ref|ZP_03601213.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324200|ref|ZP_03605494.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321312264|ref|YP_004204551.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5]
gi|6226496|sp|O34634|RUVX_BACSU RecName: Full=Putative Holliday junction resolvase
gi|2635185|emb|CAB14681.1| putative Holliday junction resolvase [Bacillus subtilis subsp.
subtilis str. 168]
gi|291485144|dbj|BAI86219.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
natto BEST195]
gi|320018538|gb|ADV93524.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5]
Length = 138
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +DLGTK +G+A+SD A + + L I I ++G
Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGF 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR +++ F + + VP V WDERLTT++A+++LI +VSR+KR +
Sbjct: 62 PKNMNGTVGPRGEASQTFAKVL-ETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD ++
Sbjct: 121 IDKMAAVMILQGYLDSLN 138
>gi|308188042|ref|YP_003932173.1| Holliday junction resolvase [Pantoea vagans C9-1]
gi|308058552|gb|ADO10724.1| putative Holliday junction resolvase [Pantoea vagans C9-1]
Length = 139
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D GTK IG+A+ A P + + + + ++GLP
Sbjct: 4 QTLLGFDFGTKSIGVAVGQELTGSARPLTAIKAQDGIPDWQVIEKLLKEWQPDFVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P R F + + R + DERL+TV A+ L + R V
Sbjct: 64 LNMDGTEQPLTDRARKFANRLHGR-FGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122
Query: 137 DSIAAALILQEVLDR 151
DS +AA+ILQ+ +
Sbjct: 123 DSQSAAIILQDWFEN 137
>gi|19746980|ref|NP_608116.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS8232]
gi|28896707|ref|NP_803057.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
SSI-1]
gi|50915141|ref|YP_061113.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10394]
gi|71904442|ref|YP_281245.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS6180]
gi|94989437|ref|YP_597538.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS9429]
gi|94993326|ref|YP_601425.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS2096]
gi|94995284|ref|YP_603382.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10750]
gi|139474553|ref|YP_001129269.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
str. Manfredo]
gi|306826480|ref|ZP_07459791.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
ATCC 10782]
gi|54039589|sp|P67495|RUVX_STRP8 RecName: Full=Putative Holliday junction resolvase
gi|54042293|sp|P67494|RUVX_STRP3 RecName: Full=Putative Holliday junction resolvase
gi|62900945|sp|Q5X9I3|RUVX_STRP6 RecName: Full=Putative Holliday junction resolvase
gi|118597224|sp|Q1J498|RUVX_STRPF RecName: Full=Putative Holliday junction resolvase
gi|146325612|sp|Q1J9D0|RUVX_STRPB RecName: Full=Putative Holliday junction resolvase
gi|146325613|sp|Q1JJH9|RUVX_STRPC RecName: Full=Putative Holliday junction resolvase
gi|146325614|sp|Q48QX0|RUVX_STRPM RecName: Full=Putative Holliday junction resolvase
gi|167016512|sp|A2RGU5|RUVX_STRPG RecName: Full=Putative Holliday junction resolvase
gi|19749234|gb|AAL98615.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|28811961|dbj|BAC64890.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|50904215|gb|AAT87930.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10394]
gi|71803537|gb|AAX72890.1| hypothetical protein M28_Spy1780 [Streptococcus pyogenes MGAS6180]
gi|94542945|gb|ABF32994.1| endonuclease involved in recombination [Streptococcus pyogenes
MGAS9429]
gi|94546834|gb|ABF36881.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS2096]
gi|94548792|gb|ABF38838.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10750]
gi|134272800|emb|CAM31077.1| putative Holliday junction resolvase [Streptococcus pyogenes str.
Manfredo]
gi|304431339|gb|EFM34337.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
ATCC 10782]
Length = 139
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + +K L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTNGPRVDASITYG-NHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ L+R
Sbjct: 121 VIDKLAAQLILQNYLNR 137
>gi|52081220|ref|YP_080011.1| Holliday junction resolvase-like protein [Bacillus licheniformis
ATCC 14580]
gi|52786601|ref|YP_092430.1| Holliday junction resolvase-like protein [Bacillus licheniformis
ATCC 14580]
gi|319644812|ref|ZP_07999045.1| Holliday junction resolvase [Bacillus sp. BT1B_CT2]
gi|62900959|sp|Q65GS7|RUVX_BACLD RecName: Full=Putative Holliday junction resolvase
gi|52004431|gb|AAU24373.1| conserved protein YrrK [Bacillus licheniformis ATCC 14580]
gi|52349103|gb|AAU41737.1| YrrK [Bacillus licheniformis ATCC 14580]
gi|317392621|gb|EFV73415.1| Holliday junction resolvase [Bacillus sp. BT1B_CT2]
Length = 139
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +DLG+K +G+A+SD A + + L I ++G
Sbjct: 2 RILGLDLGSKTLGVALSDEMGWTAQGIETIKIDEAGGDYGLNRLAELTKDYVIDKIVLGF 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR +++ F + + VP V WDERL+T++A+++LI +VSR+KR +
Sbjct: 62 PKNMNGTVGPRGEASQKFAEVL-EETFQVPVVLWDERLSTMAAERMLISADVSRQKRKKV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD ++
Sbjct: 121 IDKMAAVMILQGYLDSLN 138
>gi|172058081|ref|YP_001814541.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15]
gi|171990602|gb|ACB61524.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15]
Length = 140
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALELLSFITTENIAAFII 73
+ +D+G+K IG+A+SD A + + L + I + +I
Sbjct: 1 MKRAIGLDVGSKTIGVAVSDLMGWTAQGVETIKWTEPEYPVAFKRLEAIIKEYGVEIIVI 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMNGS GPR ++ AF I+ + + V DERLTT+ A+++LID +VSRKKR
Sbjct: 61 GHPKNMNGSIGPRAEASEAFARE-IETQTGLSTVLVDERLTTMQAERMLIDADVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
Q +D +AA +ILQ LDR +
Sbjct: 120 QVIDKMAAVMILQSYLDRAN 139
>gi|312870461|ref|ZP_07730581.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3]
gi|311094018|gb|EFQ52342.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3]
Length = 147
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A+SDP A + + + + + E +A F++GL
Sbjct: 2 RLLGLDVGSKTVGIAVSDPLGWTAQAVEIIPIDEDEEVFGLDRVAELVDKEQVAGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN +EGPRV +++ + + +R +P F DERLTTV A ++L+ + ++SR K+ +
Sbjct: 62 PKNMNNTEGPRVAASKHYGELLQERFPQIPIDFQDERLTTVEAHRMLVEEADISRAKQKK 121
Query: 135 KVDSIAAALILQEVLDRISFL 155
+D +AA ILQ LDR L
Sbjct: 122 VIDEVAATFILQSYLDRHGRL 142
>gi|148543770|ref|YP_001271140.1| Holliday junction resolvase-like protein [Lactobacillus reuteri DSM
20016]
gi|184153176|ref|YP_001841517.1| hypothetical protein LAR_0521 [Lactobacillus reuteri JCM 1112]
gi|194468335|ref|ZP_03074321.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23]
gi|227363250|ref|ZP_03847382.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM2-3]
gi|227544202|ref|ZP_03974251.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
CF48-3A]
gi|300908197|ref|ZP_07125663.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
SD2112]
gi|325682142|ref|ZP_08161660.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM4-1A]
gi|167012733|sp|A5VIX9|RUVX_LACRD RecName: Full=Putative Holliday junction resolvase
gi|226731626|sp|B2G6F5|RUVX_LACRJ RecName: Full=Putative Holliday junction resolvase
gi|148530804|gb|ABQ82803.1| Holliday junction resolvase YqgF [Lactobacillus reuteri DSM 20016]
gi|154705538|gb|ABS84195.1| holliday junction resolvase-like protein [Lactobacillus reuteri]
gi|183224520|dbj|BAG25037.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|194453188|gb|EDX42086.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23]
gi|227071706|gb|EEI09997.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM2-3]
gi|227185838|gb|EEI65909.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
CF48-3A]
gi|300894624|gb|EFK87980.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
SD2112]
gi|324978786|gb|EGC15735.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM4-1A]
Length = 147
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+++SDP A + + + + + E +A F+IGL
Sbjct: 2 RLMGLDVGSKTVGISVSDPLGWTAQAVEIIPIDEENEIFGIDRVAELVKKEQVAGFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN +EGPRV +++ + + R +P F DERLTTV A ++L+ + ++SR K+ +
Sbjct: 62 PKNMNNTEGPRVEASQHYGKLLQQRFPDIPIDFQDERLTTVEAHRMLVEEADISRAKQKK 121
Query: 135 KVDSIAAALILQEVLDRISFL 155
+D +AA ILQ LDR L
Sbjct: 122 VIDEVAATFILQSYLDRHGRL 142
>gi|312864393|ref|ZP_07724626.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415]
gi|311100114|gb|EFQ58325.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415]
Length = 139
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISDP A + + + L + + F++GL
Sbjct: 2 RLMGLDIGSKTVGVAISDPLGFTAQGLEIIPINEAKEDFGFQRLGELVKQYKVEKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV A+++L++ +VSR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGEKIAE-LFDIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA LILQ L+R+
Sbjct: 121 VIDKLAAQLILQNYLERM 138
>gi|229543745|ref|ZP_04432805.1| Holliday junction resolvase YqgF [Bacillus coagulans 36D1]
gi|229328165|gb|EEN93840.1| Holliday junction resolvase YqgF [Bacillus coagulans 36D1]
Length = 138
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K +G+A+SD A + + + + ++G
Sbjct: 2 KIMGLDVGSKTVGVAVSDALGWTAQGIETIAINEAKGKFGFDRVAELAQIHGVEKIVVGF 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GPR +++ + + +++ +P + WDERL+T A++IL++ +VSRKKR +
Sbjct: 62 PKNMNNTIGPRAEASKVYAEEL-KKRLNLPVILWDERLSTAQAERILLEADVSRKKRKKV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA++ILQ LD
Sbjct: 121 IDKMAASVILQGFLDS 136
>gi|167767372|ref|ZP_02439425.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1]
gi|167711347|gb|EDS21926.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1]
Length = 139
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
+ I +D GTK +G+A+SD A P + RK K+ +T + + N+ +
Sbjct: 1 MRRILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYNVEKIV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP NMN + G R T +F + + R+ + + WDERLTTV+++++L++ V R+ R
Sbjct: 61 LGLPKNMNNTVGERGEDTLSF-RDALVRRTGLEVILWDERLTTVASEKVLMESGVRRENR 119
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D IAA++ILQ LD +
Sbjct: 120 KKVIDQIAASMILQGYLDSL 139
>gi|332365435|gb|EGJ43196.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK355]
Length = 139
Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + K L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRRK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|322388593|ref|ZP_08062193.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
ATCC 700779]
gi|321140513|gb|EFX36018.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
ATCC 700779]
Length = 136
Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + L + T + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGEFGFERLKELVDTYKVERFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EELFGLPVEYQDERLTTVAAERMLIEQADISRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|194398342|ref|YP_002036896.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
G54]
gi|226695305|sp|B5E6E1|RUVX_STRP4 RecName: Full=Putative Holliday junction resolvase
gi|194358009|gb|ACF56457.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
Length = 139
Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + ++ Q + + T + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGXEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|225028523|ref|ZP_03717715.1| hypothetical protein EUBHAL_02802 [Eubacterium hallii DSM 3353]
gi|224954166|gb|EEG35375.1| hypothetical protein EUBHAL_02802 [Eubacterium hallii DSM 3353]
Length = 145
Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
+ +D GTK +G+A+SD A + RK K+ QT + + I ++ +
Sbjct: 2 KERWMGLDYGTKTVGVAVSDALGITAQGVETVTRKSNKKLRQTLARIEALIEEYEVSKIV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP NMN + G R T+ F M+ R+ + V WDERLTT+ +++IL + V R+ R
Sbjct: 62 LGLPKNMNNTLGERAEETKEF-QAMLQRRTGLEVVLWDERLTTMESERILQEGGVRRENR 120
Query: 133 IQKVDSIAAALILQEVLD 150
+++D +AA LILQ +D
Sbjct: 121 KERIDWMAATLILQSYMD 138
>gi|325568881|ref|ZP_08145174.1| crossover junction endodeoxyribonuclease [Enterococcus
casseliflavus ATCC 12755]
gi|325157919|gb|EGC70075.1| crossover junction endodeoxyribonuclease [Enterococcus
casseliflavus ATCC 12755]
Length = 143
Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G++ +G+A+SDP A + + L + ++ F++GL
Sbjct: 2 RIMGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPR ++ A+ I+++ +P V+ DERLTTV A+++L++ N SR KR +
Sbjct: 62 PKNMNNTIGPRAEASMAYGAA-IEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRKK 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 121 VIDKLAAVMILQNYLD 136
>gi|154504518|ref|ZP_02041256.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149]
gi|153795000|gb|EDN77420.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149]
Length = 148
Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D GTK +G+AISD A + RK K+ +T + + + ++G
Sbjct: 2 RIMGLDYGTKTVGVAISDALGLTAQGIETIQRKEENKLRRTLARIEELVREYEVDTIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +MN G R + F M+ R+ + V WDERLTTV A++ LI+ V R+ R Q
Sbjct: 62 FPKHMNNDVGERAKKSLEF-KEMLVRRTGLDVVMWDERLTTVEAERTLIESQVRRENRKQ 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D IAA ILQ LD I
Sbjct: 121 YIDKIAAVFILQGYLDSI 138
>gi|299144217|ref|ZP_07037297.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298518702|gb|EFI42441.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 140
Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D+G K IG+A+SD A P + R+ Q ++ + I NIA ++GL
Sbjct: 5 MEKILGLDIGDKWIGVAVSDLLGITAQPLVTIKRESNKQAYEDIYNLIKENNIAKVVVGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ F + ++ V ++ DER+TT+SA +ILI+ V R+ R Q
Sbjct: 65 PKNMNNTLGPQSEKVLKFSEKLKNK-YGVEIIYIDERMTTISANRILIEGEVRRENRKQY 123
Query: 136 VDSIAAALILQEVLDR 151
VD IAA ILQ LD
Sbjct: 124 VDKIAATYILQTYLDS 139
>gi|311069221|ref|YP_003974144.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942]
gi|310869738|gb|ADP33213.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942]
Length = 138
Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +DLGTK +G+A+SD A + + L I ++G
Sbjct: 2 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLPRLSELTKDHTIDKIVLGF 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR +
Sbjct: 62 PKNMNGTVGPRGEASQTFA-KLLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD ++
Sbjct: 121 IDKMAAVMILQGYLDSLN 138
>gi|312862410|ref|ZP_07722653.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis
F0396]
gi|322515847|ref|ZP_08068791.1| crossover junction endodeoxyribonuclease [Streptococcus
vestibularis ATCC 49124]
gi|311102053|gb|EFQ60253.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis
F0396]
gi|322125733|gb|EFX97055.1| crossover junction endodeoxyribonuclease [Streptococcus
vestibularis ATCC 49124]
Length = 139
Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISDP A + + + L + + F++GL
Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVEKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR +
Sbjct: 62 PKNMNNTEGPRVEASKAYGDK-IKEIFEIPVDYQDERLTTVQAERMLVEQADVSRGKRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138
>gi|228478096|ref|ZP_04062707.1| conserved hypothetical protein [Streptococcus salivarius SK126]
gi|228250276|gb|EEK09529.1| conserved hypothetical protein [Streptococcus salivarius SK126]
Length = 139
Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISDP A + + + L + + F++GL
Sbjct: 2 RVMGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVEKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ ++SR KR +
Sbjct: 62 PKNMNNTEGPRVEASKAYGDK-IKEIFGIPVDYQDERLTTVQAERMLVEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138
>gi|94991373|ref|YP_599473.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10270]
gi|118597223|sp|Q1JEI0|RUVX_STRPD RecName: Full=Putative Holliday junction resolvase
gi|94544881|gb|ABF34929.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10270]
Length = 139
Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + +K L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + PRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTNSPRVDASITYG-NHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ L+R
Sbjct: 121 VIDKLAAQLILQNYLNR 137
>gi|153812697|ref|ZP_01965365.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174]
gi|149831213|gb|EDM86302.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174]
Length = 140
Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+A+SDP A + RK K+ +T ++ + I ++G
Sbjct: 2 RILGLDYGSKTVGVAVSDPLGVTAQRLETIWRKQENKLRRTLAQVEELVKEYEIEKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R F M+ ++ + + WDERLTTVSA + L++ V R+ R +
Sbjct: 62 YPKNMNNTVGERAEKALEFGE-MLKKRTGLEVIMWDERLTTVSADRALMEAGVRRENRKE 120
Query: 135 KVDSIAAALILQEVLDRISF 154
+D IAA ILQ LD +
Sbjct: 121 YLDGIAAVFILQGYLDSLKM 140
>gi|114570258|ref|YP_756938.1| Holliday junction resolvase YqgF [Maricaulis maris MCS10]
gi|114340720|gb|ABI66000.1| Holliday junction resolvase YqgF [Maricaulis maris MCS10]
Length = 151
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 88/156 (56%), Gaps = 6/156 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I+ +EDL P+ P+ ++D G+K IG+A R + P + R K T A +
Sbjct: 1 MPIVTLEDL-----PDGPLIALDPGSKTIGVAACGASRGLSTPVETIKRTKFTADAERVF 55
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + A ++GLP+NM+GSEGPRV S RA N++ + +P F DERL+T A++
Sbjct: 56 ALLDERQAVAIVMGLPVNMDGSEGPRVQSVRAMARNLMRLR-DLPIAFQDERLSTFEAEE 114
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
LI V R KR +D+ AAA ILQ LDR+ L
Sbjct: 115 KLISAGVRRDKRKDIIDAHAAANILQSALDRLEMLR 150
>gi|238916712|ref|YP_002930229.1| putative Holliday junction resolvase [Eubacterium eligens ATCC
27750]
gi|259495704|sp|C4Z578|RUVX_EUBE2 RecName: Full=Putative Holliday junction resolvase
gi|238872072|gb|ACR71782.1| putative Holliday junction resolvase [Eubacterium eligens ATCC
27750]
Length = 140
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFIIG 74
I +D+GTK +G+A+SDP A P + RK+ + T + I+ ++ ++G
Sbjct: 2 RIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NM+ + G R + F + +R+ +P WDERLTTV A ++L + + R+ R
Sbjct: 62 YPKNMDDTIGERAKACEEFAAAL-ERRTGLPVTLWDERLTTVEADEVLEECGMRRENRKT 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA IL+ ++
Sbjct: 121 VIDQLAAVFILRGYMES 137
>gi|15675863|ref|NP_270037.1| Holliday junction resolvase-like protein [Streptococcus pyogenes M1
GAS]
gi|71911609|ref|YP_283159.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS5005]
gi|32130060|sp|Q99XP4|RUVX_STRP1 RecName: Full=Putative Holliday junction resolvase
gi|13623097|gb|AAK34758.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71854391|gb|AAZ52414.1| endonuclease involved in recombination [Streptococcus pyogenes
MGAS5005]
Length = 139
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + +K L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTNGPRVDASITYG-NHIEHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ L+R
Sbjct: 121 VIDKLAAQLILQNYLNR 137
>gi|289168746|ref|YP_003447015.1| holiday junction resolvase [Streptococcus mitis B6]
gi|288908313|emb|CBJ23155.1| holiday junction resolvase [Streptococcus mitis B6]
Length = 139
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + ++ Q + + T + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGAKL-EELFSLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|254460515|ref|ZP_05073931.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
HTCC2083]
gi|206677104|gb|EDZ41591.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
bacterium HTCC2083]
Length = 160
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I+D +L + + +DLGTK IG+++SD A P + R K T A L
Sbjct: 1 MIFETIDDFAAALPRARALVGLDLGTKTIGVSVSDGLLSVASPLETIKRTKYTADAARLE 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I I ++GLP NM+GSEGPR STRAF N+ R+ +P +WDERL+TV+A++
Sbjct: 61 QIIEARYIGGIVLGLPFNMDGSEGPRCQSTRAFARNLA-RQSELPITYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
L+ + SR++R + +D++AAA ILQ LDR+S +
Sbjct: 120 ALLAADASRRRRAEVIDNVAAAYILQGALDRLSHIRREA 158
>gi|292900531|ref|YP_003539900.1| holliday junction resolvase [Erwinia amylovora ATCC 49946]
gi|291200379|emb|CBJ47507.1| putative holliday junction resolvase [Erwinia amylovora ATCC 49946]
Length = 140
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
NQ + D GTK IG+AI A P L + L + + ++G
Sbjct: 2 RNQTCLAFDFGTKSIGVAIGQQLTGTARPLIALKAQDGIPDWNRLEALLKEWQPDRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+GSE P R F + + R V DERL+TV A+ L + R
Sbjct: 62 LPLNMDGSEQPLTVRARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VDS++A +IL+ +
Sbjct: 121 NVDSLSAVIILESWFEN 137
>gi|258592801|emb|CBE69110.1| putative Holliday junction resolvase [NC10 bacterium 'Dutch
sediment']
Length = 144
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
Q ID GTKRIG+AISD A P P L + + I ++GL
Sbjct: 1 MQRYLGIDFGTKRIGVAISDELGLTAQPLPTLEPSTDEAAVRAIREIMDQYGILDVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP AF + + V WDERLT+++A+++LI+ ++SR KR ++
Sbjct: 61 PKNMNGTLGPSAERALAFAGQL-EEGGSVKVTMWDERLTSLAAERLLIEADLSRAKRKRR 119
Query: 136 VDSIAAALILQEVLDR 151
VD +AA LILQ LDR
Sbjct: 120 VDQMAAVLILQGFLDR 135
>gi|149174656|ref|ZP_01853281.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797]
gi|148846350|gb|EDL60688.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797]
Length = 162
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ +D GTKR+G+AIS + A P R+ + Q LLS IT
Sbjct: 11 FEAEFPAEGRLLGLDYGTKRVGIAISTFEQNIASPLDNYNRQSLPQDQKHLLSIITEYRC 70
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP++M+G EG + R F N + + +P +WDER ++ +A++IL+++N+S
Sbjct: 71 KGLVVGLPVHMSGDEGQKAKEARQFG-NWVSQFAEIPVRYWDERYSSATAEEILVNLNMS 129
Query: 129 RKKRIQKVDSIAAALILQEVLDR 151
R KR +D +AA +ILQ LD
Sbjct: 130 RNKRKAYLDKLAAQIILQSFLDS 152
>gi|227552124|ref|ZP_03982173.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
TX1330]
gi|257882634|ref|ZP_05662287.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257886706|ref|ZP_05666359.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257894866|ref|ZP_05674519.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|257895281|ref|ZP_05674934.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257897895|ref|ZP_05677548.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|293553141|ref|ZP_06673779.1| conserved hypothetical protein [Enterococcus faecium E1039]
gi|293568771|ref|ZP_06680085.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|293571039|ref|ZP_06682081.1| conserved hypothetical protein [Enterococcus faecium E980]
gi|227178706|gb|EEI59678.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
TX1330]
gi|257818292|gb|EEV45620.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257822760|gb|EEV49692.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257831245|gb|EEV57852.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|257831846|gb|EEV58267.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257835807|gb|EEV60881.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|291588488|gb|EFF20322.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|291602732|gb|EFF32946.1| conserved hypothetical protein [Enterococcus faecium E1039]
gi|291608879|gb|EFF38159.1| conserved hypothetical protein [Enterococcus faecium E980]
Length = 143
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A+SDP A + + + L + + F++GL
Sbjct: 2 RVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR +
Sbjct: 62 PKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRKK 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 121 VIDKLAAVMILQNYLD 136
>gi|23099462|ref|NP_692928.1| hypothetical protein OB2007 [Oceanobacillus iheyensis HTE831]
gi|32130032|sp|Q8EPT1|RUVX_OCEIH RecName: Full=Putative Holliday junction resolvase
gi|22777691|dbj|BAC13963.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 137
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALELLSFITTENIAAFIIGL 75
I +D+G+K IG+A+SD A + + EL I+ I IIGL
Sbjct: 2 KIIGLDVGSKTIGVAVSDALGWTAQGVKTIRWDENDLSSADEELEKIISEHEIGKAIIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ G R +++ + N I++ +P WDERLTT++A+++L++ ++SR KR +
Sbjct: 62 PKNMNGTIGERGEASQRYA-NHIEKVFQIPVDLWDERLTTMAAERVLLEADMSRSKRKKV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LD+
Sbjct: 121 IDKMAAVMILQGYLDQ 136
>gi|329296973|ref|ZP_08254309.1| Holliday junction resolvase YqgF [Plautia stali symbiont]
Length = 138
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + D GTK IG+AI A P L + T + + ++GL
Sbjct: 3 SETLLGFDFGTKSIGVAIGQQLTGTARPLTALKAQDGTPDWELIGKLLKEWRPDCVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F + + R V DERL+TV A+ L + R +
Sbjct: 63 PLNMDGSEQPLTARARKFANRLHGR-FGVRVELQDERLSTVEARADLFERGGYRALQKGH 121
Query: 136 VDSIAAALILQEVLD 150
+DS +A +ILQ+ +
Sbjct: 122 IDSQSAVIILQDWFE 136
>gi|292487084|ref|YP_003529954.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430]
gi|291552501|emb|CBA19546.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430]
gi|312171187|emb|CBX79446.1| putative Holliday junction resolvase [Erwinia amylovora ATCC
BAA-2158]
Length = 141
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
NQ + D GTK IG+AI A P L + L + + ++G
Sbjct: 3 RNQTCLAFDFGTKSIGVAIGQQLTGTARPLIALKAQDGIPDWNRLEALLKEWQPDRVVVG 62
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+GSE P R F + + R V DERL+TV A+ L + R
Sbjct: 63 LPLNMDGSEQPLTVRARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKG 121
Query: 135 KVDSIAAALILQEVLDR 151
VDS++A +IL+ +
Sbjct: 122 NVDSLSAVIILESWFEN 138
>gi|295399319|ref|ZP_06809301.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius
C56-YS93]
gi|312110120|ref|YP_003988436.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1]
gi|294978785|gb|EFG54381.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius
C56-YS93]
gi|311215221|gb|ADP73825.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1]
Length = 138
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 3/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77
+DLGTK +G+A+SD A + + L I + ++G P
Sbjct: 4 LGLDLGTKTLGVAVSDELGWTAQGIETISIDEEQGEYGLKRLREIIDEYKVDTIVVGFPK 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR +++ F +++++ +P + WDERL+T++A+++LI +VSRKKR + +D
Sbjct: 64 NMNGTVGPRAEASQRFA-KILEQEFALPVILWDERLSTMAAERMLIAADVSRKKRRKVID 122
Query: 138 SIAAALILQEVLDR 151
+AA +ILQ LD
Sbjct: 123 KMAAVVILQSYLDS 136
>gi|330684841|gb|EGG96531.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
VCU121]
Length = 142
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L + +L+ I + +I
Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIDQLVDIIKKHGVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAEKSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD IS
Sbjct: 123 KVIDKMAAVFILQGYLDSIS 142
>gi|331091336|ref|ZP_08340176.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA]
gi|330404497|gb|EGG84041.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA]
Length = 142
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+AISD A + RK K+ +T + + I + ++G
Sbjct: 2 RIMGLDYGSKTVGVAISDALCLTAQGIETIQRKEENKLRKTLARIETLIKEYEVDKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +MN G R + AF +M++R+ + + WDERLTTV A++ LI+ NV R++R +
Sbjct: 62 FPKHMNNDIGDRAEKSLAF-KDMLERRTGLEVIMWDERLTTVEAERTLIESNVRREERKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
VD IAA ILQ LD +
Sbjct: 121 YVDKIAAIFILQGYLDSV 138
>gi|312143794|ref|YP_003995240.1| Holliday junction resolvase YqgF [Halanaerobium sp. 'sapolanicus']
gi|311904445|gb|ADQ14886.1| Holliday junction resolvase YqgF [Halanaerobium sp. 'sapolanicus']
Length = 136
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ID G KR+G+A+SD A P L + + +EL +I ++ I+G+P
Sbjct: 2 RILGIDYGNKRVGIAVSDALGWTAQPLTTLKQHGHQELLVELRQYIEKYDVEKIIVGMPY 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GS G R T+AF+ N + + +P DERLTT A+ IL++ ++SR +R +D
Sbjct: 62 NMDGSRGKRAEITQAFI-NFLKNNLEIPVEIQDERLTTSQAENILLEADLSRSRRKDVID 120
Query: 138 SIAAALILQEVLD 150
+AAALILQ LD
Sbjct: 121 KLAAALILQSYLD 133
>gi|317497454|ref|ZP_07955774.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium
5_1_63FAA]
gi|316895240|gb|EFV17402.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium
5_1_63FAA]
Length = 139
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
+ I +D GTK +G+A+SD A P + RK K+ +T + + ++ +
Sbjct: 1 MRRILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP NMN + G R T +F + + R+ + + WDERLTTV+++++L++ V R+ R
Sbjct: 61 LGLPKNMNNTVGERGEDTLSF-RDTLVRRTGLEVILWDERLTTVASEKVLMESGVRRENR 119
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D IAA++ILQ LD +
Sbjct: 120 KKVIDQIAASMILQGYLDSL 139
>gi|51893132|ref|YP_075823.1| hypothetical protein STH1994 [Symbiobacterium thermophilum IAM
14863]
gi|62900963|sp|Q67MW4|RUVX_SYMTH RecName: Full=Putative Holliday junction resolvase
gi|51856821|dbj|BAD40979.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 144
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 78/133 (58%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G K IG+A+SD A + R+ + Q L + +++G+P
Sbjct: 2 RIGGLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLDEIARHYGVVRWVVGMPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR TRAF+ + +P WDERL+T++A+++L++ +VSR +R + +D
Sbjct: 62 NMNGTYGPRAELTRAFMERLAGHS-GLPVEAWDERLSTMAAERVLLEADVSRARRRKVID 120
Query: 138 SIAAALILQEVLD 150
+AAA+ILQ LD
Sbjct: 121 KMAAAVILQGYLD 133
>gi|293364362|ref|ZP_06611088.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC
35037]
gi|291317208|gb|EFE57635.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC
35037]
Length = 139
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + Q + + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAQLILQNYLDR 137
>gi|89054672|ref|YP_510123.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1]
gi|88864221|gb|ABD55098.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1]
Length = 145
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 60/144 (41%), Positives = 86/144 (59%), Gaps = 2/144 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + +DLGTK IG+A+SD A + RKK A L I + I+GL
Sbjct: 1 MRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAKHEVGGIILGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
P NM+GSEGPR +TRAF N+ R ++ FWDERL+TV+A++ LI + SRK+R
Sbjct: 61 PRNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAAERALIAADTSRKRRS 120
Query: 134 QKVDSIAAALILQEVLDRISFLES 157
+ +D++AA+ ILQ LDR+ L +
Sbjct: 121 EVIDAVAASYILQGALDRLRHLRA 144
>gi|332799383|ref|YP_004460882.1| Holliday junction resolvase [Tepidanaerobacter sp. Re1]
gi|332697118|gb|AEE91575.1| Holliday junction resolvase [Tepidanaerobacter sp. Re1]
Length = 143
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGL 75
I +D+G KR+G+AISD A + RK + + I+ N+ I+GL
Sbjct: 2 RILGLDVGEKRVGVAISDELGLTAQGIDVIERKNDGKNKDIDRICRIISDYNVTKVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP + + + + + + FWDERLTT +A++ILI+ +VSR+KR
Sbjct: 62 PKNMNGTLGPSSEAVENYTKKL-QKAISIDLEFWDERLTTAAAERILIEADVSRQKRKGV 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LD
Sbjct: 121 IDKLAAVLILQSYLDS 136
>gi|118597226|sp|Q5NPF1|RUVX_ZYMMO RecName: Full=Putative Holliday junction resolvase
Length = 163
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 53/147 (36%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
++L +A +D+GTK IGLA+ D A P + RKK T L F+ + +
Sbjct: 19 FQEALPRKGRLAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFTLDLELLRQFVEKQQV 78
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+IGLPLN++GS+ PR S RAF N+ + +P + WDER +T + + L++ + S
Sbjct: 79 KGLVIGLPLNLDGSDSPRTQSVRAFAKNVA--PLSLPVLMWDERWSTKAVTRTLLEADAS 136
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFL 155
R +R + VD +AAA ILQ +D +
Sbjct: 137 RARRSEVVDKMAAAYILQGAIDSFAMF 163
>gi|319408539|emb|CBI82192.1| putative resolvase [Bartonella schoenbuchensis R1]
Length = 159
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 83/160 (51%), Positives = 111/160 (69%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ I ++ L P Q IA +DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MAVINIHEITTHLLPKQTIAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLDALTLV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ +IGLP+NM+GS GPRV +TR FV NM +PFVFWDERL+T++AQ+
Sbjct: 61 QIFNNENVGVAVIGLPVNMDGSNGPRVQATRTFVSNM-GAYTKIPFVFWDERLSTIAAQR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR ++DS AAA ILQ VLDRI L ++G
Sbjct: 120 SLLEMDVSRAKRAARIDSAAAAFILQGVLDRIQNLNHTEG 159
>gi|302385313|ref|YP_003821135.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1]
gi|302195941|gb|ADL03512.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1]
Length = 146
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+A+SD A + R+ K+ +T + I I I+G
Sbjct: 2 RIMGLDYGSKTVGVAVSDLLGITAQGVETITREEENKLRKTCARIEELIREYEIETIILG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN S G R T F +I R+ + + WDERLTTV++++IL + V R+ R
Sbjct: 62 YPKNMNNSAGQRAEKTEQFKEMLI-RRTGLNVILWDERLTTVASERILQESGVRREHRKA 120
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA LILQ LD +
Sbjct: 121 VIDQVAAGLILQGYLDSLP 139
>gi|209560223|ref|YP_002286695.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
NZ131]
gi|226695308|sp|B5XJ01|RUVX_STRPZ RecName: Full=Putative Holliday junction resolvase
gi|209541424|gb|ACI62000.1| Putative Holliday junction resolvase [Streptococcus pyogenes NZ131]
Length = 139
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + +K L + + F+IGL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPRV ++ + + I+ +P + DERLTTV A+++LI+ ++SR KR +
Sbjct: 62 PKNMNNTNGPRVDASITYGSH-IEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ L+R
Sbjct: 121 VIDKLAAQLILQNYLNR 137
>gi|22538225|ref|NP_689076.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
2603V/R]
gi|76788469|ref|YP_330619.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
A909]
gi|76799707|ref|ZP_00781806.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
18RS21]
gi|77406617|ref|ZP_00783663.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
H36B]
gi|77410840|ref|ZP_00787197.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
CJB111]
gi|77412943|ref|ZP_00789146.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
515]
gi|22535137|gb|AAN00949.1|AE014286_12 conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
2603V/R]
gi|76563526|gb|ABA46110.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
A909]
gi|76584940|gb|EAO61599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
18RS21]
gi|77160955|gb|EAO72063.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
515]
gi|77163058|gb|EAO74012.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
CJB111]
gi|77174776|gb|EAO77599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
H36B]
gi|319745985|gb|EFV98267.1| crossover junction endodeoxyribonuclease [Streptococcus agalactiae
ATCC 13813]
Length = 136
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 4/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + L + + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ + + +P + DERLTTV A+++L++ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGDKITE-LFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVI 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA LILQ LDR+
Sbjct: 120 DKLAAQLILQNYLDRM 135
>gi|291559331|emb|CBL38131.1| conserved hypothetical protein TIGR00250 [butyrate-producing
bacterium SSC/2]
Length = 139
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
+ I +D GTK +G+A+SD A P + RK K+ +T + + ++ +
Sbjct: 1 MRRILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP NMN + G R T +F + + R+ + + WDERLTTV+++++L++ V R+ R
Sbjct: 61 LGLPKNMNNTVGERGEDTLSF-RDALVRRTGLEVILWDERLTTVASEKVLMESGVRRENR 119
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D IAA++ILQ LD +
Sbjct: 120 KKVIDQIAASMILQGYLDSL 139
>gi|70726304|ref|YP_253218.1| Holliday junction resolvase-like protein [Staphylococcus
haemolyticus JCSC1435]
gi|146291068|sp|Q4L6W3|RUVX_STAHJ RecName: Full=Putative Holliday junction resolvase
gi|68447028|dbj|BAE04612.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 142
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISD A L + + +L++ I N+ + +IG
Sbjct: 4 HKILGLDVGSKTVGVAISDLMGWTAQGLDTLRINEELEDYGIEQLVTIIKENNVGSVVIG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 64 LPKNMNNSIGFRGEASLRYKELLKESLPDIEIIMWDERLSTMAAERSLLEADVSRQKRKK 123
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA ILQ LD I
Sbjct: 124 VIDKMAAVFILQGYLDSIQ 142
>gi|259909608|ref|YP_002649964.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
gi|224965230|emb|CAX56762.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
Length = 140
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + + D GTK IG+AI A P L + + + + ++GL
Sbjct: 3 HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F + + R V DERL+TV A+ L + R
Sbjct: 63 PLNMDGSEQPLTVRARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121
Query: 136 VDSIAAALILQEVLDR 151
VDS++A +IL+ +
Sbjct: 122 VDSLSAVIILESWFEN 137
>gi|227499548|ref|ZP_03929655.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
ATCC 35098]
gi|227218307|gb|EEI83561.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
ATCC 35098]
Length = 139
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G K IG+A+SDP A+ + RK + L I ++ ++GL
Sbjct: 1 MSRIMGLDVGNKTIGVALSDPMFLLANGLETIKRKNASSDIERLREIINDNDVELIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ +FV ++I ++V + V+ DER+TT+ ++ +LIDM+V R+ R +
Sbjct: 61 PKNMNNTIGPQAMRVMSFV-DLIKKQVDIEIVYQDERMTTIQSEAVLIDMDVRRENRKKY 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D IAA ILQ LDR
Sbjct: 120 IDKIAATFILQTYLDRRK 137
>gi|69245163|ref|ZP_00603287.1| Conserved hypothetical protein 250 [Enterococcus faecium DO]
gi|257879617|ref|ZP_05659270.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257883923|ref|ZP_05663576.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257890284|ref|ZP_05669937.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|258616772|ref|ZP_05714542.1| Holliday junction resolvase-like protein [Enterococcus faecium DO]
gi|260559720|ref|ZP_05831900.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|261208764|ref|ZP_05923201.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289565552|ref|ZP_06445999.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|293560123|ref|ZP_06676627.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|294614420|ref|ZP_06694336.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636]
gi|294617987|ref|ZP_06697592.1| conserved hypothetical protein [Enterococcus faecium E1679]
gi|314939503|ref|ZP_07846735.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a04]
gi|314944177|ref|ZP_07850822.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133C]
gi|314949753|ref|ZP_07853063.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0082]
gi|314951904|ref|ZP_07854936.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133A]
gi|314994470|ref|ZP_07859749.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133B]
gi|314997874|ref|ZP_07862775.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a01]
gi|68196006|gb|EAN10439.1| Conserved hypothetical protein 250 [Enterococcus faecium DO]
gi|257813845|gb|EEV42603.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257819761|gb|EEV46909.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257826644|gb|EEV53270.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|260074388|gb|EEW62710.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|260077266|gb|EEW64986.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289162634|gb|EFD10487.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|291592728|gb|EFF24321.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636]
gi|291595796|gb|EFF27084.1| conserved hypothetical protein [Enterococcus faecium E1679]
gi|291605990|gb|EFF35420.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|313588099|gb|EFR66944.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a01]
gi|313591125|gb|EFR69970.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133B]
gi|313595938|gb|EFR74783.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133A]
gi|313597239|gb|EFR76084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133C]
gi|313641204|gb|EFS05784.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a04]
gi|313643826|gb|EFS08406.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0082]
Length = 143
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISDP A + + + L + + F++GL
Sbjct: 2 RVMGLDVGSKTVGVAISDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR +
Sbjct: 62 PKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRKK 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 121 VIDKLAAVMILQNYLD 136
>gi|323705257|ref|ZP_08116832.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535159|gb|EGB24935.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 140
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G K IG+A+SDP A + R+ + E+ I + ++G P
Sbjct: 2 RTIGLDVGDKTIGIAVSDPSGLIAQGIKTIRRESLDNDVFEIKKIIDAFKVEEIVVGFPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMNG+ G + FV + + + +P + WDERLTTV A ++L++ ++ R KR + +
Sbjct: 62 NMNGTIGAQGQKVINFVEYLKEE-IDLPIMLWDERLTTVEANRMLVENADMRRDKRKKVI 120
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD
Sbjct: 121 DKLAATIILQGYLDYKR 137
>gi|310766485|gb|ADP11435.1| putative Holliday junction resolvase [Erwinia sp. Ejp617]
Length = 141
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + + D GTK IG+AI A P L + + + + ++GL
Sbjct: 4 HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F + + R V DERL+TV A+ L + R
Sbjct: 64 PLNMDGSEQPLTARARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122
Query: 136 VDSIAAALILQEVLDR 151
VDS++A +IL+ +
Sbjct: 123 VDSLSAVIILESWFEN 138
>gi|325290060|ref|YP_004266241.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271]
gi|324965461|gb|ADY56240.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271]
Length = 134
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +DLG K IG+A+SD A P + R + Q EL I + ++G P
Sbjct: 2 RVMGLDLGEKTIGVAVSDLLMLTAQPLLVIKRSEKEQ--EELAGIIKEYEVDTIVVGYPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ G R +T AF + +P WDERL+TV+AQ+ LI +VSR KR + +D
Sbjct: 60 NMNGTIGERALATEAFAQEL-QAAFRLPIKLWDERLSTVAAQKSLIQADVSRAKRKKVID 118
Query: 138 SIAAALILQEVLDR 151
+AA ILQ LD
Sbjct: 119 KMAAVFILQGFLDS 132
>gi|242242890|ref|ZP_04797335.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis W23144]
gi|242233665|gb|EES35977.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis W23144]
Length = 142
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L + + +L+ I + +I
Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQEDLGIDQLVKIIKDNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESVPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142
>gi|16130850|ref|NP_417424.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. MG1655]
gi|26249370|ref|NP_755410.1| Holliday junction resolvase-like protein [Escherichia coli CFT073]
gi|89109726|ref|AP_003506.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. W3110]
gi|91212331|ref|YP_542317.1| Holliday junction resolvase-like protein [Escherichia coli UTI89]
gi|110643098|ref|YP_670828.1| Holliday junction resolvase-like protein [Escherichia coli 536]
gi|117625176|ref|YP_854164.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1]
gi|157162408|ref|YP_001459726.1| Holliday junction resolvase-like protein [Escherichia coli HS]
gi|170018810|ref|YP_001723764.1| Holliday junction resolvase-like protein [Escherichia coli ATCC
8739]
gi|170082501|ref|YP_001731821.1| Holliday junction resolvase [Escherichia coli str. K-12 substr.
DH10B]
gi|188491785|ref|ZP_02999055.1| putative Holliday junction resolvase [Escherichia coli 53638]
gi|191171877|ref|ZP_03033423.1| putative Holliday junction resolvase [Escherichia coli F11]
gi|218559940|ref|YP_002392853.1| Holliday junction resolvase-like protein [Escherichia coli S88]
gi|218691073|ref|YP_002399285.1| Holliday junction resolvase-like protein [Escherichia coli ED1a]
gi|218696547|ref|YP_002404214.1| Holliday junction resolvase-like protein [Escherichia coli 55989]
gi|238902071|ref|YP_002927867.1| putative Holliday junction resolvase [Escherichia coli BW2952]
gi|253772213|ref|YP_003035044.1| Holliday junction resolvase-like protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|256024542|ref|ZP_05438407.1| Holliday junction resolvase-like protein [Escherichia sp. 4_1_40B]
gi|293412309|ref|ZP_06655032.1| hypothetical protein ECEG_02316 [Escherichia coli B354]
gi|300824850|ref|ZP_07104953.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
119-7]
gi|300906487|ref|ZP_07124182.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1]
gi|300921290|ref|ZP_07137659.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
115-1]
gi|300940769|ref|ZP_07155315.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1]
gi|300947679|ref|ZP_07161848.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
116-1]
gi|300954205|ref|ZP_07166670.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1]
gi|300980101|ref|ZP_07174844.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1]
gi|300995470|ref|ZP_07181118.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1]
gi|301027300|ref|ZP_07190646.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1]
gi|301027726|ref|ZP_07191036.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
196-1]
gi|301049256|ref|ZP_07196229.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
185-1]
gi|301306394|ref|ZP_07212463.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1]
gi|301327365|ref|ZP_07220615.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1]
gi|301643698|ref|ZP_07243737.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
146-1]
gi|306812147|ref|ZP_07446345.1| Holliday junction resolvase-like protein [Escherichia coli NC101]
gi|307139634|ref|ZP_07498990.1| Holliday junction resolvase-like protein [Escherichia coli H736]
gi|312972810|ref|ZP_07786983.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|331643642|ref|ZP_08344773.1| putative Holliday junction resolvase [Escherichia coli H736]
gi|331648704|ref|ZP_08349792.1| putative Holliday junction resolvase [Escherichia coli M605]
gi|331659084|ref|ZP_08360026.1| putative Holliday junction resolvase [Escherichia coli TA206]
gi|331669692|ref|ZP_08370538.1| putative Holliday junction resolvase [Escherichia coli TA271]
gi|331678941|ref|ZP_08379615.1| putative Holliday junction resolvase [Escherichia coli H591]
gi|67472397|sp|P0A8I1|RUVX_ECOLI RecName: Full=Putative Holliday junction resolvase
gi|67472398|sp|P0A8I2|RUVX_ECOL6 RecName: Full=Putative Holliday junction resolvase
gi|118597209|sp|Q0TDQ2|RUVX_ECOL5 RecName: Full=Putative Holliday junction resolvase
gi|146325571|sp|Q1R778|RUVX_ECOUT RecName: Full=Putative Holliday junction resolvase
gi|167012719|sp|A8A489|RUVX_ECOHS RecName: Full=Putative Holliday junction resolvase
gi|167012720|sp|A1AFD5|RUVX_ECOK1 RecName: Full=Putative Holliday junction resolvase
gi|189046095|sp|B1IT58|RUVX_ECOLC RecName: Full=Putative Holliday junction resolvase
gi|226725515|sp|B7MMD7|RUVX_ECO45 RecName: Full=Putative Holliday junction resolvase
gi|226725519|sp|B1XFA9|RUVX_ECODH RecName: Full=Putative Holliday junction resolvase
gi|254767515|sp|B7LFL2|RUVX_ECO55 RecName: Full=Putative Holliday junction resolvase
gi|254767516|sp|B7MZP8|RUVX_ECO81 RecName: Full=Putative Holliday junction resolvase
gi|259495702|sp|C5A0L8|RUVX_ECOBW RecName: Full=Putative Holliday junction resolvase
gi|46014935|pdb|1NMN|A Chain A, Structure Of Yqgf From Escherichia Coli, A Hypothetical
Protein
gi|46014936|pdb|1NMN|B Chain B, Structure Of Yqgf From Escherichia Coli, A Hypothetical
Protein
gi|26109778|gb|AAN81983.1|AE016766_71 Hypothetical protein yqgF [Escherichia coli CFT073]
gi|1789318|gb|AAC75986.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. MG1655]
gi|85675759|dbj|BAE77012.1| predicted Holliday junction resolvase [Escherichia coli str. K12
substr. W3110]
gi|91073905|gb|ABE08786.1| hypothetical protein UTI89_C3338 [Escherichia coli UTI89]
gi|110344690|gb|ABG70927.1| hypothetical protein YqgF [Escherichia coli 536]
gi|115514300|gb|ABJ02375.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1]
gi|157068088|gb|ABV07343.1| conserved hypothetical protein TIGR00250 [Escherichia coli HS]
gi|169753738|gb|ACA76437.1| Holliday junction resolvase YqgF [Escherichia coli ATCC 8739]
gi|169890336|gb|ACB04043.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. DH10B]
gi|188486984|gb|EDU62087.1| putative Holliday junction resolvase [Escherichia coli 53638]
gi|190907912|gb|EDV67505.1| putative Holliday junction resolvase [Escherichia coli F11]
gi|218353279|emb|CAU99238.1| Holliday junction resolvase [Escherichia coli 55989]
gi|218366709|emb|CAR04466.1| Holliday junction resolvase [Escherichia coli S88]
gi|218428637|emb|CAR09566.2| Holliday junction resolvase [Escherichia coli ED1a]
gi|222034644|emb|CAP77386.1| Holliday junction resolvase [Escherichia coli LF82]
gi|238862456|gb|ACR64454.1| predicted Holliday junction resolvase [Escherichia coli BW2952]
gi|253323257|gb|ACT27859.1| Holliday junction resolvase YqgF [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260448008|gb|ACX38430.1| Holliday junction resolvase YqgF [Escherichia coli DH1]
gi|281179958|dbj|BAI56288.1| conserved hypothetical protein [Escherichia coli SE15]
gi|284922892|emb|CBG35981.1| putative holliday junction resolvase [Escherichia coli 042]
gi|291469080|gb|EFF11571.1| hypothetical protein ECEG_02316 [Escherichia coli B354]
gi|294491308|gb|ADE90064.1| conserved hypothetical protein TIGR00250 [Escherichia coli IHE3034]
gi|299879162|gb|EFI87373.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
196-1]
gi|300298952|gb|EFJ55337.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
185-1]
gi|300304832|gb|EFJ59352.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1]
gi|300318789|gb|EFJ68573.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1]
gi|300395106|gb|EFJ78644.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1]
gi|300401730|gb|EFJ85268.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1]
gi|300409358|gb|EFJ92896.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1]
gi|300411752|gb|EFJ95062.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
115-1]
gi|300452725|gb|EFK16345.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
116-1]
gi|300454469|gb|EFK17962.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1]
gi|300522688|gb|EFK43757.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
119-7]
gi|300838389|gb|EFK66149.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1]
gi|300846049|gb|EFK73809.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1]
gi|301077900|gb|EFK92706.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
146-1]
gi|305854185|gb|EFM54623.1| Holliday junction resolvase-like protein [Escherichia coli NC101]
gi|307625477|gb|ADN69781.1| Holliday junction resolvase-like protein [Escherichia coli UM146]
gi|309703304|emb|CBJ02640.1| putative holliday junction resolvase [Escherichia coli ETEC H10407]
gi|310332752|gb|EFP99965.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|312947480|gb|ADR28307.1| Holliday junction resolvase-like protein [Escherichia coli O83:H1
str. NRG 857C]
gi|315137546|dbj|BAJ44705.1| Holliday junction resolvase-like protein [Escherichia coli DH1]
gi|315256841|gb|EFU36809.1| putative Holliday junction resolvase [Escherichia coli MS 85-1]
gi|315293937|gb|EFU53289.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
153-1]
gi|315295638|gb|EFU54961.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 16-3]
gi|315614890|gb|EFU95528.1| conserved hypothetical protein [Escherichia coli 3431]
gi|320195068|gb|EFW69697.1| Putative Holliday junction resolvase [Escherichia coli WV_060327]
gi|323188657|gb|EFZ73942.1| hypothetical protein ECRN5871_3077 [Escherichia coli RN587/1]
gi|323936048|gb|EGB32343.1| hypothetical protein ERCG_02812 [Escherichia coli E1520]
gi|323941965|gb|EGB38144.1| hypothetical protein ERDG_01740 [Escherichia coli E482]
gi|323951613|gb|EGB47488.1| hypothetical protein ERKG_02256 [Escherichia coli H252]
gi|323971704|gb|EGB66932.1| hypothetical protein ERHG_02242 [Escherichia coli TA007]
gi|324011800|gb|EGB81019.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 60-1]
gi|324119744|gb|EGC13624.1| hypothetical protein ERBG_00332 [Escherichia coli E1167]
gi|330908984|gb|EGH37498.1| putative Holliday junction resolvase [Escherichia coli AA86]
gi|331037113|gb|EGI09337.1| putative Holliday junction resolvase [Escherichia coli H736]
gi|331042451|gb|EGI14593.1| putative Holliday junction resolvase [Escherichia coli M605]
gi|331053666|gb|EGI25695.1| putative Holliday junction resolvase [Escherichia coli TA206]
gi|331063360|gb|EGI35273.1| putative Holliday junction resolvase [Escherichia coli TA271]
gi|331073771|gb|EGI45092.1| putative Holliday junction resolvase [Escherichia coli H591]
gi|332344848|gb|AEE58182.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 138
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|169829318|ref|YP_001699476.1| putative Holliday junction resolvase [Lysinibacillus sphaericus
C3-41]
gi|168993806|gb|ACA41346.1| Putative Holliday junction resolvase [Lysinibacillus sphaericus
C3-41]
Length = 135
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+A+SD A + + + + I F++G P
Sbjct: 1 MGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYAITQFVVGFPT 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSR+KR Q +D
Sbjct: 61 NMNNTVGPRGEASENY-KKLLEETFSLPVTLWDERLTTMAAERMLIEADVSRRKRKQVID 119
Query: 138 SIAAALILQEVLDRIS 153
+AA +I+Q LD +
Sbjct: 120 KMAAVMIVQGYLDSKN 135
>gi|111658812|ref|ZP_01409443.1| hypothetical protein SpneT_02000110 [Streptococcus pneumoniae
TIGR4]
gi|149017883|ref|ZP_01834342.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae
SP23-BS72]
gi|183603171|ref|ZP_02710544.2| conserved hypothetical protein [Streptococcus pneumoniae
CDC1087-00]
gi|183603568|ref|ZP_02718032.2| conserved hypothetical protein [Streptococcus pneumoniae
CDC3059-06]
gi|221231101|ref|YP_002510253.1| Holliday junction resolvase [Streptococcus pneumoniae ATCC 700669]
gi|298230981|ref|ZP_06964662.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
str. Canada MDR_19F]
gi|298502010|ref|YP_003723950.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
TCH8431/19A]
gi|303265496|ref|ZP_07351396.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae
BS457]
gi|303267946|ref|ZP_07353748.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae
BS458]
gi|307126416|ref|YP_003878447.1| hypothetical protein SP670_0270 [Streptococcus pneumoniae 670-6B]
gi|147931447|gb|EDK82425.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae
SP23-BS72]
gi|183570834|gb|EDT91362.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1087-00]
gi|183576182|gb|EDT96710.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC3059-06]
gi|220673561|emb|CAR68047.1| putative Holliday junction resolvase [Streptococcus pneumoniae ATCC
700669]
gi|298237605|gb|ADI68736.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
TCH8431/19A]
gi|301799346|emb|CBW31881.1| putative Holliday junction resolvase [Streptococcus pneumoniae
OXC141]
gi|301801141|emb|CBW33814.1| putative Holliday junction resolvase [Streptococcus pneumoniae
INV200]
gi|302642642|gb|EFL72987.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae
BS458]
gi|302644936|gb|EFL75183.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae
BS457]
gi|306483478|gb|ADM90347.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
gi|327390615|gb|EGE88955.1| hypothetical protein SPAR5_0192 [Streptococcus pneumoniae GA04375]
gi|332075862|gb|EGI86329.1| uncharacterized family protein [Streptococcus pneumoniae GA17570]
gi|332076642|gb|EGI87104.1| hypothetical protein SPAR148_0175 [Streptococcus pneumoniae
GA17545]
gi|332077498|gb|EGI87959.1| hypothetical protein SPAR68_0240 [Streptococcus pneumoniae GA41301]
gi|332202111|gb|EGJ16180.1| hypothetical protein SPAR69_0222 [Streptococcus pneumoniae GA41317]
gi|332203361|gb|EGJ17428.1| hypothetical protein SPAR93_0231 [Streptococcus pneumoniae GA47368]
gi|332204204|gb|EGJ18269.1| hypothetical protein SPAR120_0169 [Streptococcus pneumoniae
GA47901]
Length = 136
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + ++ Q + + T + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|171778528|ref|ZP_02919655.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282751|gb|EDT48175.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 139
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + L + + F++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLGELVKQYKVDKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN +EGPRV +++ + I++ +P + DERLTTV A+++L++ ++SR KR +
Sbjct: 62 PKNMNNTEGPRVEASKVYGDK-INKLFNIPVDYQDERLTTVQAERMLVEQADISRGKRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA LILQ LDR+
Sbjct: 121 VIDKLAAQLILQNYLDRM 138
>gi|24114204|ref|NP_708714.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str.
301]
gi|30064265|ref|NP_838436.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str.
2457T]
gi|74313506|ref|YP_311925.1| Holliday junction resolvase-like protein [Shigella sonnei Ss046]
gi|82545428|ref|YP_409375.1| Holliday junction resolvase-like protein [Shigella boydii Sb227]
gi|110806857|ref|YP_690377.1| Holliday junction resolvase-like protein [Shigella flexneri 5 str.
8401]
gi|157158748|ref|YP_001464301.1| Holliday junction resolvase-like protein [Escherichia coli E24377A]
gi|170681746|ref|YP_001745110.1| Holliday junction resolvase-like protein [Escherichia coli SMS-3-5]
gi|187731869|ref|YP_001881722.1| Holliday junction resolvase-like protein [Shigella boydii CDC
3083-94]
gi|191167958|ref|ZP_03029761.1| putative Holliday junction resolvase [Escherichia coli B7A]
gi|193063467|ref|ZP_03044556.1| putative Holliday junction resolvase [Escherichia coli E22]
gi|193067378|ref|ZP_03048346.1| putative Holliday junction resolvase [Escherichia coli E110019]
gi|194426343|ref|ZP_03058898.1| putative Holliday junction resolvase [Escherichia coli B171]
gi|194431639|ref|ZP_03063930.1| putative Holliday junction resolvase [Shigella dysenteriae 1012]
gi|194436895|ref|ZP_03068995.1| putative Holliday junction resolvase [Escherichia coli 101-1]
gi|215488247|ref|YP_002330678.1| Holliday junction resolvase-like protein [Escherichia coli O127:H6
str. E2348/69]
gi|218550196|ref|YP_002383987.1| Holliday junction resolvase-like protein [Escherichia fergusonii
ATCC 35469]
gi|218555508|ref|YP_002388421.1| Holliday junction resolvase-like protein [Escherichia coli IAI1]
gi|218706464|ref|YP_002413983.1| Holliday junction resolvase-like protein [Escherichia coli UMN026]
gi|254037998|ref|ZP_04872056.1| Holliday junction resolvase [Escherichia sp. 1_1_43]
gi|256019249|ref|ZP_05433114.1| Holliday junction resolvase-like protein [Shigella sp. D9]
gi|260845619|ref|YP_003223397.1| putative Holliday junction resolvase [Escherichia coli O103:H2 str.
12009]
gi|260857082|ref|YP_003230973.1| putative Holliday junction resolvase [Escherichia coli O26:H11 str.
11368]
gi|260869636|ref|YP_003236038.1| putative Holliday junction resolvase [Escherichia coli O111:H- str.
11128]
gi|293406456|ref|ZP_06650382.1| Holliday junction resolvase-like protein [Escherichia coli
FVEC1412]
gi|293449279|ref|ZP_06663700.1| hypothetical protein ECCG_02310 [Escherichia coli B088]
gi|298382193|ref|ZP_06991790.1| Holliday junction resolvase [Escherichia coli FVEC1302]
gi|300815581|ref|ZP_07095805.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
107-1]
gi|300900234|ref|ZP_07118418.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
198-1]
gi|300925055|ref|ZP_07140973.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1]
gi|300928108|ref|ZP_07143653.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
187-1]
gi|307310430|ref|ZP_07590078.1| Holliday junction resolvase YqgF [Escherichia coli W]
gi|309794038|ref|ZP_07688463.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
145-7]
gi|312964788|ref|ZP_07779028.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|331664532|ref|ZP_08365438.1| putative Holliday junction resolvase [Escherichia coli TA143]
gi|331674430|ref|ZP_08375190.1| putative Holliday junction resolvase [Escherichia coli TA280]
gi|331684576|ref|ZP_08385168.1| putative Holliday junction resolvase [Escherichia coli H299]
gi|332280357|ref|ZP_08392770.1| holliday junction resolvase [Shigella sp. D9]
gi|62901027|sp|Q83JS4|RUVX_SHIFL RecName: Full=Putative Holliday junction resolvase
gi|123342527|sp|Q0T0U3|RUVX_SHIF8 RecName: Full=Putative Holliday junction resolvase
gi|126352258|sp|Q3YXS2|RUVX_SHISS RecName: Full=Putative Holliday junction resolvase
gi|146325606|sp|Q31WL1|RUVX_SHIBS RecName: Full=Putative Holliday junction resolvase
gi|167012718|sp|A7ZR72|RUVX_ECO24 RecName: Full=Putative Holliday junction resolvase
gi|226695304|sp|B2U0W9|RUVX_SHIB3 RecName: Full=Putative Holliday junction resolvase
gi|226725518|sp|B7LYX9|RUVX_ECO8A RecName: Full=Putative Holliday junction resolvase
gi|226725520|sp|B7N7K2|RUVX_ECOLU RecName: Full=Putative Holliday junction resolvase
gi|226725522|sp|B1LDF8|RUVX_ECOSM RecName: Full=Putative Holliday junction resolvase
gi|226725523|sp|B7LPR6|RUVX_ESCF3 RecName: Full=Putative Holliday junction resolvase
gi|254767514|sp|B7UHZ6|RUVX_ECO27 RecName: Full=Putative Holliday junction resolvase
gi|24053351|gb|AAN44421.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042522|gb|AAP18246.1| hypothetical protein S3144 [Shigella flexneri 2a str. 2457T]
gi|73856983|gb|AAZ89690.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81246839|gb|ABB67547.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|110616405|gb|ABF05072.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|157080778|gb|ABV20486.1| conserved hypothetical protein TIGR00250 [Escherichia coli E24377A]
gi|170519464|gb|ACB17642.1| putative Holliday junction resolvase [Escherichia coli SMS-3-5]
gi|187428861|gb|ACD08135.1| putative Holliday junction resolvase [Shigella boydii CDC 3083-94]
gi|190902043|gb|EDV61789.1| putative Holliday junction resolvase [Escherichia coli B7A]
gi|192930744|gb|EDV83349.1| putative Holliday junction resolvase [Escherichia coli E22]
gi|192959335|gb|EDV89770.1| putative Holliday junction resolvase [Escherichia coli E110019]
gi|194415651|gb|EDX31918.1| putative Holliday junction resolvase [Escherichia coli B171]
gi|194419995|gb|EDX36073.1| putative Holliday junction resolvase [Shigella dysenteriae 1012]
gi|194424377|gb|EDX40364.1| putative Holliday junction resolvase [Escherichia coli 101-1]
gi|215266319|emb|CAS10750.1| predicted Holliday junction resolvase [Escherichia coli O127:H6
str. E2348/69]
gi|218357737|emb|CAQ90381.1| Holliday junction resolvase [Escherichia fergusonii ATCC 35469]
gi|218362276|emb|CAQ99897.1| Holliday junction resolvase [Escherichia coli IAI1]
gi|218433561|emb|CAR14464.1| Holliday junction resolvase [Escherichia coli UMN026]
gi|226839622|gb|EEH71643.1| Holliday junction resolvase [Escherichia sp. 1_1_43]
gi|257755731|dbj|BAI27233.1| predicted Holliday junction resolvase [Escherichia coli O26:H11
str. 11368]
gi|257760766|dbj|BAI32263.1| predicted Holliday junction resolvase [Escherichia coli O103:H2
str. 12009]
gi|257765992|dbj|BAI37487.1| predicted Holliday junction resolvase [Escherichia coli O111:H-
str. 11128]
gi|281602286|gb|ADA75270.1| putative Holliday junction resolvase [Shigella flexneri 2002017]
gi|291322369|gb|EFE61798.1| hypothetical protein ECCG_02310 [Escherichia coli B088]
gi|291426462|gb|EFE99494.1| Holliday junction resolvase-like protein [Escherichia coli
FVEC1412]
gi|298277333|gb|EFI18849.1| Holliday junction resolvase [Escherichia coli FVEC1302]
gi|300356250|gb|EFJ72120.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
198-1]
gi|300418801|gb|EFK02112.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1]
gi|300463874|gb|EFK27367.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
187-1]
gi|300531510|gb|EFK52572.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
107-1]
gi|306909325|gb|EFN39820.1| Holliday junction resolvase YqgF [Escherichia coli W]
gi|308122445|gb|EFO59707.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
145-7]
gi|312290344|gb|EFR18224.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|313647999|gb|EFS12445.1| hypothetical protein SF2457T_3597 [Shigella flexneri 2a str. 2457T]
gi|315062255|gb|ADT76582.1| predicted Holliday junction resolvase [Escherichia coli W]
gi|320174055|gb|EFW49225.1| putative Holliday junction resolvase [Shigella dysenteriae CDC
74-1112]
gi|320181046|gb|EFW55967.1| Putative Holliday junction resolvase [Shigella boydii ATCC 9905]
gi|320184296|gb|EFW59108.1| Putative Holliday junction resolvase [Shigella flexneri CDC 796-83]
gi|323154658|gb|EFZ40857.1| hypothetical protein ECEPECA14_3458 [Escherichia coli EPECa14]
gi|323162605|gb|EFZ48452.1| hypothetical protein ECE128010_1209 [Escherichia coli E128010]
gi|323167999|gb|EFZ53688.1| hypothetical protein SS53G_1715 [Shigella sonnei 53G]
gi|323173837|gb|EFZ59466.1| hypothetical protein ECLT68_2156 [Escherichia coli LT-68]
gi|323180409|gb|EFZ65961.1| hypothetical protein ECOK1180_1091 [Escherichia coli 1180]
gi|323183520|gb|EFZ68917.1| hypothetical protein ECOK1357_3299 [Escherichia coli 1357]
gi|323377161|gb|ADX49429.1| Holliday junction resolvase YqgF [Escherichia coli KO11]
gi|323946553|gb|EGB42576.1| hypothetical protein EREG_01795 [Escherichia coli H120]
gi|323960758|gb|EGB56379.1| hypothetical protein ERGG_02693 [Escherichia coli H489]
gi|323966466|gb|EGB61899.1| hypothetical protein ERJG_02055 [Escherichia coli M863]
gi|323978756|gb|EGB73837.1| hypothetical protein ERFG_00347 [Escherichia coli TW10509]
gi|324115036|gb|EGC09001.1| hypothetical protein ERIG_00364 [Escherichia fergusonii B253]
gi|325498506|gb|EGC96365.1| Holliday junction resolvase-like protein [Escherichia fergusonii
ECD227]
gi|327251717|gb|EGE63403.1| hypothetical protein ECSTEC7V_3568 [Escherichia coli STEC_7v]
gi|331058463|gb|EGI30444.1| putative Holliday junction resolvase [Escherichia coli TA143]
gi|331068524|gb|EGI39919.1| putative Holliday junction resolvase [Escherichia coli TA280]
gi|331078191|gb|EGI49397.1| putative Holliday junction resolvase [Escherichia coli H299]
gi|332086878|gb|EGI92014.1| hypothetical protein SB521682_3504 [Shigella boydii 5216-82]
gi|332087651|gb|EGI92778.1| hypothetical protein SD15574_3397 [Shigella dysenteriae 155-74]
gi|332091359|gb|EGI96447.1| hypothetical protein SB359474_3535 [Shigella boydii 3594-74]
gi|332102709|gb|EGJ06055.1| holliday junction resolvase [Shigella sp. D9]
gi|332752992|gb|EGJ83376.1| hypothetical protein SF434370_3170 [Shigella flexneri 4343-70]
gi|332753793|gb|EGJ84172.1| hypothetical protein SFK671_3523 [Shigella flexneri K-671]
gi|332754509|gb|EGJ84875.1| hypothetical protein SF274771_3535 [Shigella flexneri 2747-71]
gi|332765366|gb|EGJ95584.1| hypothetical protein SF293071_3447 [Shigella flexneri 2930-71]
gi|332999696|gb|EGK19281.1| hypothetical protein SFVA6_3843 [Shigella flexneri VA-6]
gi|333000337|gb|EGK19920.1| hypothetical protein SFK218_3952 [Shigella flexneri K-218]
gi|333000451|gb|EGK20032.1| hypothetical protein SFK272_3772 [Shigella flexneri K-272]
gi|333015023|gb|EGK34366.1| hypothetical protein SFK304_3754 [Shigella flexneri K-304]
gi|333015289|gb|EGK34631.1| hypothetical protein SFK227_3745 [Shigella flexneri K-227]
Length = 138
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|324005505|gb|EGB74724.1| hypothetical protein HMPREF9532_04857 [Escherichia coli MS 57-2]
Length = 138
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
+DS +A +IL+ ++
Sbjct: 121 IDSASAVIILESYFEQ 136
>gi|283479686|emb|CAY75602.1| putative Holliday junction resolvase [Erwinia pyrifoliae DSM 12163]
Length = 141
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + + D GTK IG+AI A P L + + + + ++GL
Sbjct: 4 HQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F + + R V DERL+TV A+ L + R
Sbjct: 64 PLNMDGSEQPLTVRARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKGN 122
Query: 136 VDSIAAALILQEVLDR 151
VDS++A +IL+ +
Sbjct: 123 VDSLSAVIILESWFEN 138
>gi|237706398|ref|ZP_04536879.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|226899438|gb|EEH85697.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|315289503|gb|EFU48898.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
110-3]
gi|323957327|gb|EGB53049.1| hypothetical protein ERLG_01394 [Escherichia coli H263]
Length = 138
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + + DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGIEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|254162859|ref|YP_003045967.1| Holliday junction resolvase-like protein [Escherichia coli B str.
REL606]
gi|297516337|ref|ZP_06934723.1| Holliday junction resolvase-like protein [Escherichia coli OP50]
gi|242378475|emb|CAQ33259.1| predicted Holliday junction resolvase [Escherichia coli BL21(DE3)]
gi|253974760|gb|ACT40431.1| Holliday junction resolvase-like protein [Escherichia coli B str.
REL606]
gi|253978926|gb|ACT44596.1| Holliday junction resolvase-like protein [Escherichia coli
BL21(DE3)]
Length = 138
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|15803488|ref|NP_289521.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
EDL933]
gi|15833079|ref|NP_311852.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. Sakai]
gi|168747559|ref|ZP_02772581.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4113]
gi|168753901|ref|ZP_02778908.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4401]
gi|168760091|ref|ZP_02785098.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4501]
gi|168766956|ref|ZP_02791963.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4486]
gi|168773412|ref|ZP_02798419.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4196]
gi|168781808|ref|ZP_02806815.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4076]
gi|168785807|ref|ZP_02810814.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC869]
gi|168797524|ref|ZP_02822531.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC508]
gi|195937087|ref|ZP_03082469.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. EC4024]
gi|208805896|ref|ZP_03248233.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4206]
gi|208811883|ref|ZP_03253212.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4045]
gi|208820347|ref|ZP_03260667.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4042]
gi|209396593|ref|YP_002272429.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4115]
gi|217327641|ref|ZP_03443724.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
TW14588]
gi|254794901|ref|YP_003079738.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. TW14359]
gi|261226261|ref|ZP_05940542.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
str. FRIK2000]
gi|261256481|ref|ZP_05949014.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
str. FRIK966]
gi|291284270|ref|YP_003501088.1| putative Holliday junction resolvase [Escherichia coli O55:H7 str.
CB9615]
gi|32130044|sp|Q8XCV0|RUVX_ECO57 RecName: Full=Putative Holliday junction resolvase
gi|226725516|sp|B5YQE7|RUVX_ECO5E RecName: Full=Putative Holliday junction resolvase
gi|12517495|gb|AAG58080.1|AE005525_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13363297|dbj|BAB37248.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187770925|gb|EDU34769.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4196]
gi|188017800|gb|EDU55922.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4113]
gi|189000577|gb|EDU69563.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4076]
gi|189358781|gb|EDU77200.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4401]
gi|189363715|gb|EDU82134.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4486]
gi|189369432|gb|EDU87848.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4501]
gi|189374231|gb|EDU92647.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC869]
gi|189379713|gb|EDU98129.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC508]
gi|208725697|gb|EDZ75298.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4206]
gi|208733160|gb|EDZ81847.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4045]
gi|208740470|gb|EDZ88152.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4042]
gi|209157993|gb|ACI35426.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4115]
gi|209760068|gb|ACI78346.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760070|gb|ACI78347.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760072|gb|ACI78348.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760074|gb|ACI78349.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760076|gb|ACI78350.1| hypothetical protein ECs3825 [Escherichia coli]
gi|217320008|gb|EEC28433.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
TW14588]
gi|254594301|gb|ACT73662.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
str. TW14359]
gi|290764143|gb|ADD58104.1| Putative Holliday junction resolvase [Escherichia coli O55:H7 str.
CB9615]
gi|320189297|gb|EFW63956.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC1212]
gi|320640595|gb|EFX10134.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. G5101]
gi|320645842|gb|EFX14827.1| Holliday junction resolvase-like protein [Escherichia coli O157:H-
str. 493-89]
gi|320651142|gb|EFX19582.1| Holliday junction resolvase-like protein [Escherichia coli O157:H-
str. H 2687]
gi|320656638|gb|EFX24534.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320662157|gb|EFX29558.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
str. USDA 5905]
gi|320667233|gb|EFX34196.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. LSU-61]
gi|326338964|gb|EGD62779.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
1044]
gi|326343155|gb|EGD66923.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
1125]
Length = 138
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
+DS +A +IL+ ++
Sbjct: 121 IDSASAVIILESYFEQ 136
>gi|116617674|ref|YP_818045.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|122272125|sp|Q03YQ0|RUVX_LEUMM RecName: Full=Putative Holliday junction resolvase
gi|116096521|gb|ABJ61672.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 143
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G++ +G+++SDP A + + + L I +N ++GL
Sbjct: 2 RILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDEKEFGIDRLGEIIKEKNATGVVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN SEGPR ++R + +I++ +P F DERLTTV A+++LI + N+SRKKR +
Sbjct: 62 PKNMNNSEGPRAEASRNYA-KLIEKTFGLPTDFQDERLTTVEAERMLIEEANISRKKRKK 120
Query: 135 KVDSIAAALILQEVLDRISFL 155
+D IAA ILQ LD L
Sbjct: 121 VIDKIAAEFILQNYLDSKGKL 141
>gi|218701659|ref|YP_002409288.1| Holliday junction resolvase-like protein [Escherichia coli IAI39]
gi|226725517|sp|B7NI12|RUVX_ECO7I RecName: Full=Putative Holliday junction resolvase
gi|218371645|emb|CAR19484.1| Holliday junction resolvase [Escherichia coli IAI39]
Length = 138
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + + DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGIEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|304396757|ref|ZP_07378637.1| Holliday junction resolvase YqgF [Pantoea sp. aB]
gi|304355553|gb|EFM19920.1| Holliday junction resolvase YqgF [Pantoea sp. aB]
Length = 139
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D GTK IG+A+ A P L + L + + ++GLP
Sbjct: 4 QTLLGFDFGTKSIGVAVGQQLTGSARPLTALKAQDGIPDWLVIEKLLKEWQPDFVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P R F + + R + DERL+TV A+ L + R V
Sbjct: 64 LNMDGTEQPLTDRARKFANRLHGR-FGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122
Query: 137 DSIAAALILQEVLDR 151
DS +AA+ILQ+ +
Sbjct: 123 DSQSAAIILQDWFEN 137
>gi|283770690|ref|ZP_06343582.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
H19]
gi|283460837|gb|EFC07927.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
H19]
Length = 142
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
I +D+G++ +G+AISD A + + +L+ I N++ +I
Sbjct: 3 QHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVSTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
Q +D +AA ILQ LD +
Sbjct: 123 QVIDKMAAVFILQGYLDSL 141
>gi|21283295|ref|NP_646383.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MW2]
gi|49483861|ref|YP_041085.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MRSA252]
gi|49486449|ref|YP_043670.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MSSA476]
gi|57650498|ref|YP_186511.1| hypothetical protein SACOL1671 [Staphylococcus aureus subsp. aureus
COL]
gi|87160105|ref|YP_494268.1| hypothetical protein SAUSA300_1573 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88195425|ref|YP_500229.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|148268097|ref|YP_001247040.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus JH9]
gi|150394165|ref|YP_001316840.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus JH1]
gi|151221729|ref|YP_001332551.1| hypothetical protein NWMN_1517 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509843|ref|YP_001575502.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|221141114|ref|ZP_03565607.1| hypothetical protein SauraJ_05678 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253316599|ref|ZP_04839812.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|253732271|ref|ZP_04866436.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253733133|ref|ZP_04867298.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH130]
gi|255006401|ref|ZP_05145002.2| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257425741|ref|ZP_05602165.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257428401|ref|ZP_05604799.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431039|ref|ZP_05607418.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
68-397]
gi|257433725|ref|ZP_05610083.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257436640|ref|ZP_05612684.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|257793691|ref|ZP_05642670.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|258411010|ref|ZP_05681290.1| Holliday junction resolvase [Staphylococcus aureus A9763]
gi|258420188|ref|ZP_05683143.1| Holliday junction resolvase [Staphylococcus aureus A9719]
gi|258424042|ref|ZP_05686924.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|258438190|ref|ZP_05689474.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299]
gi|258443653|ref|ZP_05691992.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115]
gi|258446860|ref|ZP_05695014.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|258448774|ref|ZP_05696886.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224]
gi|258450557|ref|ZP_05698619.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|258453593|ref|ZP_05701571.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937]
gi|269203242|ref|YP_003282511.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus
ED98]
gi|282893119|ref|ZP_06301353.1| conserved hypothetical protein [Staphylococcus aureus A8117]
gi|282904197|ref|ZP_06312085.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus C160]
gi|282906023|ref|ZP_06313878.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908935|ref|ZP_06316753.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282911253|ref|ZP_06319055.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914421|ref|ZP_06322207.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M899]
gi|282916885|ref|ZP_06324643.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
D139]
gi|282919391|ref|ZP_06327126.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282920163|ref|ZP_06327888.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|282924716|ref|ZP_06332384.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|282928250|ref|ZP_06335855.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|283958377|ref|ZP_06375828.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus A017934/97]
gi|284024673|ref|ZP_06379071.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus 132]
gi|293503496|ref|ZP_06667343.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|293510513|ref|ZP_06669219.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M809]
gi|293531053|ref|ZP_06671735.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M1015]
gi|294848645|ref|ZP_06789391.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754]
gi|295406738|ref|ZP_06816543.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819]
gi|295428193|ref|ZP_06820825.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296276723|ref|ZP_06859230.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MR1]
gi|297207664|ref|ZP_06924099.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297245680|ref|ZP_06929545.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796]
gi|297590840|ref|ZP_06949478.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus MN8]
gi|300911746|ref|ZP_07129189.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH70]
gi|304380787|ref|ZP_07363454.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|54039586|sp|P67490|RUVX_STAAN RecName: Full=Putative Holliday junction resolvase
gi|54039587|sp|P67491|RUVX_STAAW RecName: Full=Putative Holliday junction resolvase
gi|54042291|sp|P67489|RUVX_STAAM RecName: Full=Putative Holliday junction resolvase
gi|62900903|sp|Q5HFE6|RUVX_STAAC RecName: Full=Putative Holliday junction resolvase
gi|62900976|sp|Q6G8V3|RUVX_STAAS RecName: Full=Putative Holliday junction resolvase
gi|62900977|sp|Q6GG87|RUVX_STAAR RecName: Full=Putative Holliday junction resolvase
gi|146325609|sp|Q2FGB0|RUVX_STAA3 RecName: Full=Putative Holliday junction resolvase
gi|146325610|sp|Q2FXW1|RUVX_STAA8 RecName: Full=Putative Holliday junction resolvase
gi|172048919|sp|A6QHF7|RUVX_STAAE RecName: Full=Putative Holliday junction resolvase
gi|189046106|sp|A6U285|RUVX_STAA2 RecName: Full=Putative Holliday junction resolvase
gi|189046107|sp|A5ITE1|RUVX_STAA9 RecName: Full=Putative Holliday junction resolvase
gi|189046108|sp|A8Z4F4|RUVX_STAAT RecName: Full=Putative Holliday junction resolvase
gi|21204735|dbj|BAB95431.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49241990|emb|CAG40687.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244892|emb|CAG43353.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57284684|gb|AAW36778.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus COL]
gi|87126079|gb|ABD20593.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|87202983|gb|ABD30793.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147741166|gb|ABQ49464.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp.
aureus JH9]
gi|149946617|gb|ABR52553.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp.
aureus JH1]
gi|150374529|dbj|BAF67789.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368652|gb|ABX29623.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|253724060|gb|EES92789.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253728889|gb|EES97618.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH130]
gi|257271435|gb|EEV03581.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257275242|gb|EEV06729.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278242|gb|EEV08884.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
68-397]
gi|257281818|gb|EEV11955.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257283991|gb|EEV14114.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|257787663|gb|EEV26003.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|257840160|gb|EEV64624.1| Holliday junction resolvase [Staphylococcus aureus A9763]
gi|257843899|gb|EEV68293.1| Holliday junction resolvase [Staphylococcus aureus A9719]
gi|257845663|gb|EEV69695.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|257848234|gb|EEV72225.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299]
gi|257851059|gb|EEV75002.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115]
gi|257854435|gb|EEV77384.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|257858052|gb|EEV80941.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224]
gi|257861715|gb|EEV84514.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|257864324|gb|EEV87074.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937]
gi|262075532|gb|ACY11505.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus
ED98]
gi|269941102|emb|CBI49488.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313551|gb|EFB43946.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|282317201|gb|EFB47575.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282319372|gb|EFB49724.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
D139]
gi|282321602|gb|EFB51927.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M899]
gi|282324948|gb|EFB55258.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327199|gb|EFB57494.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282331315|gb|EFB60829.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282590057|gb|EFB95139.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|282594511|gb|EFB99496.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|282595815|gb|EFC00779.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus C160]
gi|282764437|gb|EFC04563.1| conserved hypothetical protein [Staphylococcus aureus A8117]
gi|283470893|emb|CAQ50104.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ST398]
gi|283790526|gb|EFC29343.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290920321|gb|EFD97387.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M1015]
gi|291095162|gb|EFE25427.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|291466877|gb|EFF09397.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M809]
gi|294824671|gb|EFG41094.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754]
gi|294968485|gb|EFG44509.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819]
gi|295128551|gb|EFG58185.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296887681|gb|EFH26579.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297177331|gb|EFH36583.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796]
gi|297575726|gb|EFH94442.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus MN8]
gi|298694896|gb|ADI98118.1| probable Holliday junction resolvase [Staphylococcus aureus subsp.
aureus ED133]
gi|300885992|gb|EFK81194.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH70]
gi|302333290|gb|ADL23483.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302751445|gb|ADL65622.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|304340663|gb|EFM06596.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312437916|gb|ADQ76987.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH60]
gi|312830003|emb|CBX34845.1| uncharacterised protein family (UPF0081) family protein
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129897|gb|EFT85887.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS03]
gi|315195516|gb|EFU25903.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS00]
gi|315198687|gb|EFU29015.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS01]
gi|320140497|gb|EFW32351.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144036|gb|EFW35805.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus MRSA177]
gi|323439037|gb|EGA96769.1| Holliday junction resolvase-like protein [Staphylococcus aureus
O11]
gi|323442820|gb|EGB00445.1| Holliday junction resolvase-like protein [Staphylococcus aureus
O46]
gi|329314291|gb|AEB88704.1| Putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus T0131]
gi|329727568|gb|EGG64024.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21172]
gi|329728326|gb|EGG64763.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21189]
gi|329733081|gb|EGG69418.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21193]
Length = 142
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
I +D+G++ +G+AISD A + + +L+ I N+ +I
Sbjct: 3 QHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
Q +D +AA ILQ LD +
Sbjct: 123 QVIDKMAAVFILQGYLDSL 141
>gi|262277133|ref|ZP_06054926.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
gi|262224236|gb|EEY74695.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
Length = 156
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
+ +D + + N I ID G K IGL++SDP ++ A P +V KK Q EL +
Sbjct: 6 LCDNKDFLIKVGKNSRILGIDPGKKNIGLSVSDPNQKIATPFKIIVMKKFKQFLEELNNI 65
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I I +IG P+NM+G+ GPR S R F N I + +P WDERL++ A ++
Sbjct: 66 IREYEIKGIVIGNPINMDGTSGPRSQSARDFAQN-ISKNTKLPITLWDERLSSEGAFNLM 124
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
D++++ K+ + +D AAA ILQ LD ++
Sbjct: 125 GDLDINSSKKSKNLDQHAAAFILQGYLDFLN 155
>gi|293378151|ref|ZP_06624320.1| RNAse YqgF [Enterococcus faecium PC4.1]
gi|292643015|gb|EFF61156.1| RNAse YqgF [Enterococcus faecium PC4.1]
Length = 143
Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A+SDP A + + + L + + F++GL
Sbjct: 2 RVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN S GPR ++ + I +P + DERLTTV A+++L++ N SR KR +
Sbjct: 62 PKNMNNSIGPRAEASMLYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRKK 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 121 VIDKLAAVMILQNYLD 136
>gi|240949410|ref|ZP_04753751.1| Holliday junction resolvase-like protein [Actinobacillus minor
NM305]
gi|240296159|gb|EER46815.1| Holliday junction resolvase-like protein [Actinobacillus minor
NM305]
Length = 140
Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GT IG A+ A P + ++ I ++GLP
Sbjct: 3 KTVLAFDFGTYSIGCAVGQSITGTAQGLPAFKAQDGIPDWTQIEKVIQEWQPDVLVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P + F + + + + +P DERLTTV A+ + + + KV
Sbjct: 63 LNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKGKV 121
Query: 137 DSIAAALILQEVLDRIS 153
D+I+A LIL+ + S
Sbjct: 122 DAISACLILESWFENQS 138
>gi|306826005|ref|ZP_07459341.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|306828767|ref|ZP_07461959.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
6249]
gi|315612311|ref|ZP_07887225.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
ATCC 49296]
gi|331267155|ref|YP_004326785.1| Holliday junction resolvase-like protein,putative ribonuclease
[Streptococcus oralis Uo5]
gi|304428945|gb|EFM32033.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
6249]
gi|304431721|gb|EFM34701.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|315315704|gb|EFU63742.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
ATCC 49296]
gi|326683827|emb|CBZ01445.1| Holliday junction resolvase-like protein,putative ribonuclease
[Streptococcus oralis Uo5]
Length = 136
Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + Q + + + + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|227888504|ref|ZP_04006309.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972]
gi|227834773|gb|EEJ45239.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972]
gi|307554931|gb|ADN47706.1| putative holliday junction resolvase [Escherichia coli ABU 83972]
Length = 138
Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKSK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|331654461|ref|ZP_08355461.1| putative Holliday junction resolvase [Escherichia coli M718]
gi|331047843|gb|EGI19920.1| putative Holliday junction resolvase [Escherichia coli M718]
Length = 138
Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|306834532|ref|ZP_07467645.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC
700338]
gi|304423334|gb|EFM26487.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC
700338]
Length = 136
Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 4/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + L + + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGVEIVRIDEEAGEFGFERLEELVKQYKVDKFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN +EGPRV +++A+ I+ +P + DERLTTV A+++L++ +VSR KR + +
Sbjct: 61 NMNNTEGPRVEASKAYGDK-INELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKKVI 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA LILQ LDR+
Sbjct: 120 DKLAAQLILQNYLDRM 135
>gi|157879567|pdb|1OVQ|A Chain A, Solution Structure Of The Hypothetical Protein Yqgf From
Escherichia Coli
Length = 138
Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|254360570|ref|ZP_04976719.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
PHL213]
gi|261493723|ref|ZP_05990241.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261494545|ref|ZP_05991029.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|153091110|gb|EDN73115.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
PHL213]
gi|261309794|gb|EEY11013.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261310613|gb|EEY11798.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 141
Score = 173 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GT IG A+ A + E+ + ++GLP
Sbjct: 7 KTVIAFDFGTNSIGCAVGQSITGTAQGLTTFKAQDGIPNWEEIGKLLQDWKPDMLVVGLP 66
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P R F + + + + +P DERLTTV A+ + + + KV
Sbjct: 67 LNMDGTEQPLTQRARKFANRL-NGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKDKV 125
Query: 137 DSIAAALILQEVLDR 151
DSI+A LIL+ +
Sbjct: 126 DSISACLILESWFEN 140
>gi|27468217|ref|NP_764854.1| hypothetical protein SE1299 [Staphylococcus epidermidis ATCC 12228]
gi|57867099|ref|YP_188756.1| hypothetical protein SERP1180 [Staphylococcus epidermidis RP62A]
gi|251811023|ref|ZP_04825496.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis BCM-HMP0060]
gi|282875958|ref|ZP_06284825.1| RNAse YqgF [Staphylococcus epidermidis SK135]
gi|293366426|ref|ZP_06613104.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|32130023|sp|Q8CSA9|RUVX_STAES RecName: Full=Putative Holliday junction resolvase
gi|62900904|sp|Q5HNT4|RUVX_STAEQ RecName: Full=Putative Holliday junction resolvase
gi|27315763|gb|AAO04898.1|AE016748_132 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637757|gb|AAW54545.1| conserved hypothetical protein TIGR00250 [Staphylococcus
epidermidis RP62A]
gi|251805441|gb|EES58098.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis BCM-HMP0060]
gi|281294983|gb|EFA87510.1| RNAse YqgF [Staphylococcus epidermidis SK135]
gi|291319460|gb|EFE59828.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329735297|gb|EGG71589.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
VCU045]
gi|329737275|gb|EGG73529.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
VCU028]
Length = 142
Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L + +L+ I + +I
Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQDDLGIDQLVKIIKDNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESIPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142
>gi|224476714|ref|YP_002634320.1| Holliday junction resolvase-like protein [Staphylococcus carnosus
subsp. carnosus TM300]
gi|254767525|sp|B9DNH1|RUVX_STACT RecName: Full=Putative Holliday junction resolvase
gi|222421321|emb|CAL28135.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 142
Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+A+SD A + ++ +L I E+ +IG
Sbjct: 4 HKIIGLDVGSKTVGVAVSDLMGWTAQGLDTLRINEEENELGITKLAEIIKKEDADTVVIG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN S G R ++ + ++ + V WDERL+T++A++ L++ +VSR KR +
Sbjct: 64 LPKNMNNSIGFRGEASLKYKEELLKILPDINVVMWDERLSTMAAERSLLEADVSRSKRKK 123
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA ILQ LD +
Sbjct: 124 VIDKMAAVFILQGYLDSLQ 142
>gi|257465328|ref|ZP_05629699.1| Holliday junction resolvase-like protein [Actinobacillus minor 202]
gi|257450988|gb|EEV25031.1| Holliday junction resolvase-like protein [Actinobacillus minor 202]
Length = 140
Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GT IG A+ A P + ++ I ++GLP
Sbjct: 3 KTVLAFDFGTYSIGCAVGQSITGTAQGLPAFKAQDGIPDWAQIEKVIQEWQPDVLVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P + F + + + + +P DERLTTV A+ + + + KV
Sbjct: 63 LNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKGKV 121
Query: 137 DSIAAALILQEVLDR 151
D+I+A LIL+ +
Sbjct: 122 DAISACLILESWFEN 136
>gi|227432459|ref|ZP_03914446.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227351780|gb|EEJ42019.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 143
Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats.
Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G++ +G++ISDP A + + + L I +N ++GL
Sbjct: 2 RILGLDVGSRTVGVSISDPMGWTAQGVEIIRINEDDKEFGIDRLGEIIKEKNATGVVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN SEGPR ++R + +I+ +P F DERLTTV A+++LI + N+SRKKR +
Sbjct: 62 PKNMNNSEGPRAEASRNYA-KLIEETFGLPTDFQDERLTTVEAERMLIEEANISRKKRKK 120
Query: 135 KVDSIAAALILQEVLDRISFL 155
+D IAA ILQ LD L
Sbjct: 121 VIDKIAAEFILQNYLDSKGKL 141
>gi|219871133|ref|YP_002475508.1| Holliday junction resolvase-like protein [Haemophilus parasuis
SH0165]
gi|254767517|sp|B8F5F8|RUVX_HAEPS RecName: Full=Putative Holliday junction resolvase
gi|219691337|gb|ACL32560.1| holliday junction resolvase-like protein/crossover junction
endodeoxyribonuclease [Haemophilus parasuis SH0165]
Length = 138
Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + + D GT IG A+ A P + ++ I ++GL
Sbjct: 2 SQTVLAFDFGTNSIGCAVGQSITGTAQGLPAFKAQDGIPNWEQIGKVIAQWQPDLLVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P + F + + + + +P DERLTTV A+ + + + K
Sbjct: 62 PLNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVEAKSEIFARGGFKALKKGK 120
Query: 136 VDSIAAALILQEVLDRIS 153
VD+I+A LIL+ ++ S
Sbjct: 121 VDAISACLILESWFEQQS 138
>gi|319400946|gb|EFV89165.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
Length = 142
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L + +L+ I + +I
Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQDDLGIDQLVKIIKDNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + D + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQDSVPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142
>gi|256847958|ref|ZP_05553402.1| Holliday junction resolvase YqgF [Lactobacillus coleohominis
101-4-CHN]
gi|256715018|gb|EEU29995.1| Holliday junction resolvase YqgF [Lactobacillus coleohominis
101-4-CHN]
Length = 146
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A SDP A + + + + + +A F++GL
Sbjct: 2 RLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEENEIFGIDRIAELVQARQVAGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN +EGPRV ++R + + R +P F DERLTTV A ++L+ + +VSR+K+ +
Sbjct: 62 PKNMNNTEGPRVEASRHYGELLRQRFPKLPIDFQDERLTTVQAHRMLVEEADVSRRKQKK 121
Query: 135 KVDSIAAALILQEVLDRISFL 155
+D +AA+LILQ LDR L
Sbjct: 122 VIDELAASLILQNYLDRHGKL 142
>gi|77408149|ref|ZP_00784895.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
COH1]
gi|77173249|gb|EAO76372.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
COH1]
Length = 136
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + L + + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++ + + + +P + DERLTTV A+++L++ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQVYGDKITE-LFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVI 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA LILQ LDR+
Sbjct: 120 DKLAAQLILQNYLDRM 135
>gi|307704051|ref|ZP_07640982.1| Holliday junction resolvase, putative [Streptococcus mitis SK597]
gi|307709897|ref|ZP_07646344.1| Holliday junction resolvase, putative [Streptococcus mitis SK564]
gi|307619268|gb|EFN98397.1| Holliday junction resolvase, putative [Streptococcus mitis SK564]
gi|307622402|gb|EFO01408.1| Holliday junction resolvase, putative [Streptococcus mitis SK597]
Length = 136
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + ++ Q + + T + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|302023160|ref|ZP_07248371.1| Holliday junction resolvase-like protein [Streptococcus suis
05HAS68]
gi|330831916|ref|YP_004400741.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
gi|319757235|gb|ADV69177.1| Holliday junction resolvase-like protein [Streptococcus suis JS14]
gi|329306139|gb|AEB80555.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
Length = 136
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + +K L + + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ +++ + +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYG-DLLTERYKLPVDYQDERLTTVAAERMLIEQADISRGKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|21911333|ref|NP_665601.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS315]
gi|21905548|gb|AAM80404.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
Length = 136
Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats.
Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + +K L + + F+IGLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV ++ + N I+ +P + DERLTTV A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTNGPRVDASITYG-NHIEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ L+R
Sbjct: 120 DKLAAQLILQNYLNR 134
>gi|241896590|ref|ZP_04783886.1| crossover junction endodeoxyribonuclease [Weissella
paramesenteroides ATCC 33313]
gi|241870182|gb|EER73933.1| crossover junction endodeoxyribonuclease [Weissella
paramesenteroides ATCC 33313]
Length = 144
Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 4/143 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
I +D+G++ +G+A+SD A + + + + + F++
Sbjct: 1 MGRILGLDVGSRTVGVAVSDQLGWTAQGVEIIPINEDEKEFGIDRMKELVAKYEPIGFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKR 132
GLP NMN + GPRV ++RA+ ++ +P F DERLTTV A+++LI + + SRKKR
Sbjct: 61 GLPKNMNNTSGPRVDASRAYGE-LLKETFGLPIDFQDERLTTVEAERMLIEEADTSRKKR 119
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
+ +D +AA LILQ LDR L
Sbjct: 120 KKVIDKLAAGLILQNYLDRKGSL 142
>gi|82778279|ref|YP_404628.1| Holliday junction resolvase-like protein [Shigella dysenteriae
Sd197]
gi|209920408|ref|YP_002294492.1| Holliday junction resolvase-like protein [Escherichia coli SE11]
gi|293416210|ref|ZP_06658850.1| hypothetical protein ECDG_03813 [Escherichia coli B185]
gi|309785223|ref|ZP_07679854.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|146325607|sp|Q32C18|RUVX_SHIDS RecName: Full=Putative Holliday junction resolvase
gi|226725521|sp|B6I787|RUVX_ECOSE RecName: Full=Putative Holliday junction resolvase
gi|81242427|gb|ABB63137.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|209913667|dbj|BAG78741.1| conserved hypothetical protein [Escherichia coli SE11]
gi|291432399|gb|EFF05381.1| hypothetical protein ECDG_03813 [Escherichia coli B185]
gi|308926343|gb|EFP71819.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|320202613|gb|EFW77183.1| Putative Holliday junction resolvase [Escherichia coli EC4100B]
gi|324017221|gb|EGB86440.1| hypothetical protein HMPREF9542_04132 [Escherichia coli MS 117-3]
Length = 138
Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVDVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|170746909|ref|YP_001753169.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans
JCM 2831]
gi|170653431|gb|ACB22486.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans
JCM 2831]
Length = 170
Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats.
Identities = 67/155 (43%), Positives = 90/155 (58%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ I + + IDLGTK IGLA+SD GR+ A P + R K T A L
Sbjct: 1 MNFDAIRAFAAESRGGARLIGIDLGTKTIGLALSDLGRQIATPLETIRRVKFTPDAQRLA 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + ++GLPLNM+GSEGPRV STRAF+ N+ + +P VF+DERL+T +
Sbjct: 61 ALCRQHAVGGLVVGLPLNMDGSEGPRVQSTRAFMRNLAP-ILPLPHVFFDERLSTAVVTR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
LI+ + SR +R Q VD +AAA ILQ LD + L
Sbjct: 120 ALIEADASRARRGQLVDKLAAAYILQGCLDVMRNL 154
>gi|260589075|ref|ZP_05854988.1| putative holliday junction resolvase [Blautia hansenii DSM 20583]
gi|331082505|ref|ZP_08331630.1| Holliday junction resolvase [Lachnospiraceae bacterium 6_1_63FAA]
gi|260540495|gb|EEX21064.1| putative holliday junction resolvase [Blautia hansenii DSM 20583]
gi|330400483|gb|EGG80113.1| Holliday junction resolvase [Lachnospiraceae bacterium 6_1_63FAA]
Length = 144
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K IG+AISDP A + R+ K+ ++ + ++ ++G
Sbjct: 2 RIMGLDYGSKTIGVAISDPLGITAQGIEIIRREEENKLRKSLRRVEELAKEYEVSEIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R + + +R++ +P V WDERLTTV A + L++ V R+ R +
Sbjct: 62 FPKNMNNTIGERAEKSLQLKEAL-ERRLGLPVVMWDERLTTVEANRTLMETGVRRENRGK 120
Query: 135 KVDSIAAALILQEVLD 150
VD IAA ILQ LD
Sbjct: 121 YVDMIAAVFILQGYLD 136
>gi|326386640|ref|ZP_08208262.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens
DSM 19370]
gi|326208955|gb|EGD59750.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens
DSM 19370]
Length = 155
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I + +L + +D GTK IG+A+ D G RFA P L R+K Q E++
Sbjct: 1 MITTAIGEFRAALSEGGVLMGLDPGTKTIGIALCDAGWRFASPSHTLNRRKFAQDKAEIV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I ++ +IGLPLNM+GSE PR + RA N+ D + +P + WDER TT +A++
Sbjct: 61 GIIAQRSVRGIVIGLPLNMDGSESPRSQAARAMARNLAD--LALPTLLWDERWTTQAAER 118
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+I ++SR KR +++D+ AAALILQ +D ++
Sbjct: 119 AMIAQDMSRAKRAERIDAHAAALILQGAIDALA 151
>gi|302380637|ref|ZP_07269102.1| Holliday junction resolvase-like protein [Finegoldia magna
ACS-171-V-Col3]
gi|303233893|ref|ZP_07320542.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4]
gi|302311580|gb|EFK93596.1| Holliday junction resolvase-like protein [Finegoldia magna
ACS-171-V-Col3]
gi|302494818|gb|EFL54575.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4]
Length = 137
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G + IG+AISDP A + RK + + I + ++ I+GL
Sbjct: 1 MERYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINGIIKEKEVSKIIVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ + FV + + + + DERLTTVSA ++LI+ NVSRKKR
Sbjct: 61 PKNMNNTIGPQAKKVKTFVKEL-RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDV 119
Query: 136 VDSIAAALILQEVLD 150
+DS+AA ILQ LD
Sbjct: 120 IDSVAATYILQTYLD 134
>gi|332686781|ref|YP_004456555.1| putative holliday junction resolvase [Melissococcus plutonius ATCC
35311]
gi|332370790|dbj|BAK21746.1| putative holliday junction resolvase [Melissococcus plutonius ATCC
35311]
Length = 140
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 4/138 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+A+SD A + +K L I F+IGLP
Sbjct: 1 MGLDVGSKTVGVAVSDLLGWTAQGIEIIRINEEKGQFGFDRLEELAEEYEITKFVIGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN S GPR ++ AF + + +P V+ DERLTTV A+++LI+ + SR KR + +
Sbjct: 61 NMNNSIGPRAEASLAFGEKLQE-LFQLPVVYQDERLTTVQAERMLIEQADTSRAKRKKVI 119
Query: 137 DSIAAALILQEVLDRISF 154
D +AA +ILQ LD
Sbjct: 120 DKLAAVMILQNYLDSQKH 137
>gi|319892670|ref|YP_004149545.1| Putative Holliday junction resolvase [Staphylococcus
pseudintermedius HKU10-03]
gi|317162366|gb|ADV05909.1| Putative Holliday junction resolvase [Staphylococcus
pseudintermedius HKU10-03]
gi|323464292|gb|ADX76445.1| Holliday junction resolvase, putative [Staphylococcus
pseudintermedius ED99]
Length = 142
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
I +D+G++ +G+AISD A + ++ L+ I EN+ +I
Sbjct: 3 KHKIIGLDVGSRTVGIAISDLMGWTAQGLDTLQINEEENELGIDALIDIIQKENVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + +R + + WDERL+T++A++ L++ +VSR KR
Sbjct: 63 GLPKNMNNSIGFRGEASLKYKDALAERMPNLEIIMWDERLSTMAAERSLLEADVSRAKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD ++
Sbjct: 123 KVIDKMAAVFILQGYLDGLN 142
>gi|91776452|ref|YP_546208.1| Holliday junction resolvase-like protein [Methylobacillus
flagellatus KT]
gi|124107442|sp|Q1GZH0|RUVX_METFK RecName: Full=Putative Holliday junction resolvase
gi|91710439|gb|ABE50367.1| Holliday junction resolvase YqgF [Methylobacillus flagellatus KT]
Length = 146
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 1/142 (0%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ + D G KRIG+AI + AHP + + + + I
Sbjct: 5 AASSRGCVLGFDFGEKRIGVAIGEHLLGIAHPLVTIDAEANDKRFAAIAGLIEEWQPEML 64
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLP +NG E R F + + + +P DERL++ A Q L +S +K
Sbjct: 65 VVGLPSYLNGDEHALTQLCRKFARRL-EGRFNLPVQLVDERLSSAEASQTLKQSGISGRK 123
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ D ++
Sbjct: 124 QKSVLDQVAAQHILQSYFDGLA 145
>gi|307711065|ref|ZP_07647487.1| conserved hypothetical protein [Streptococcus mitis SK321]
gi|307617027|gb|EFN96205.1| conserved hypothetical protein [Streptococcus mitis SK321]
Length = 136
Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + ++ Q + + T + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EELFDLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|317471885|ref|ZP_07931220.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA]
gi|316900658|gb|EFV22637.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA]
Length = 138
Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D GTK +G+A+SD A P + RK K+ +T + + + ++G
Sbjct: 2 RILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIVAEYKVEKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R +T AF +++ R+ + + WDERL+TV++ ++L++ V R+ R +
Sbjct: 62 YPKNMNNTIGERGMATEAFRDSLV-RRTGLDVILWDERLSTVASNKVLMESGVRREHRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA++ILQ LD +
Sbjct: 121 VIDQVAASMILQGYLDSL 138
>gi|226328801|ref|ZP_03804319.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198]
gi|225201987|gb|EEG84341.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198]
Length = 139
Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + D GTK IG+AI A P K ++ I ++GL
Sbjct: 3 NKTVMGFDFGTKSIGVAIGQEITGTARPLASFKAKDGIPDWAQIEKIIKEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E + F + + R V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQLVTAQAKKFANRLHGR-FGVQIALHDERLSTVEARAHLFERGGYRSLDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDAASAVIILESWFEQ 137
>gi|161506351|ref|YP_001573463.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|189046104|sp|A9MQS7|RUVX_SALAR RecName: Full=Putative Holliday junction resolvase
gi|160867698|gb|ABX24321.1| hypothetical protein SARI_04548 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 138
Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+AI A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|222151503|ref|YP_002560659.1| hypothetical protein MCCL_1256 [Macrococcus caseolyticus JCSC5402]
gi|222120628|dbj|BAH17963.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 139
Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77
+D+G+K IG+A+SD A L + + L I T N+ +IGLP
Sbjct: 5 IGLDVGSKTIGVALSDAMGWTAQGLTTLRIDEANEDYGIEALKEIIETNNVTTAVIGLPK 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GP ++ F + + + WDERL+TV A++ L++ +VSRKKR Q +D
Sbjct: 65 NMNNTIGPSGEASLHFSEILKSACPELDIIMWDERLSTVGAERSLLEADVSRKKRKQVID 124
Query: 138 SIAAALILQEVLDR 151
+AA ILQ L+
Sbjct: 125 KMAAVFILQGYLNS 138
>gi|188534953|ref|YP_001908750.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
gi|188029995|emb|CAO97879.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
Length = 140
Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q S D GTK IG+AI A P L + + + + ++GL
Sbjct: 3 SQTFLSFDFGTKSIGVAIGQRLTGTARPLNALKAQDGIPDWNRIEALLKEWQPERVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F + + R V DERL+TV A+ L + R
Sbjct: 63 PLNMDGSEQPLTARARKFANRLHGR-FGVQVDLHDERLSTVEARAELFERGGFRALSKGN 121
Query: 136 VDSIAAALILQEVLDR 151
VDS++A +IL+ +
Sbjct: 122 VDSLSAVIILESWFEN 137
>gi|82751216|ref|YP_416957.1| Holliday junction resolvase-like protein [Staphylococcus aureus
RF122]
gi|146325611|sp|Q2YT62|RUVX_STAAB RecName: Full=Putative Holliday junction resolvase
gi|82656747|emb|CAI81176.1| probable Holliday junction resolvase [Staphylococcus aureus RF122]
Length = 142
Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
I +D+G++ +G+AISD A + + +L+ I N+ +I
Sbjct: 3 QHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
Q +D +AA ILQ LD +
Sbjct: 123 QLIDKMAAVFILQGYLDSL 141
>gi|220923238|ref|YP_002498540.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS
2060]
gi|219947845|gb|ACL58237.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS
2060]
Length = 163
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 1 MSILLIEDLVKSLKPNQ-PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
M+ +S + + +DLGTK IGLA+SD GRR A P + R K T A +L
Sbjct: 1 MNRESFARFAESSRAGGARLLGLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDAQKL 60
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ +IGLPLNM+GSEGPR STRAFV N+ + +P + +DERL+T +
Sbjct: 61 AGIARQHGVGGLVIGLPLNMDGSEGPRAQSTRAFVRNLAP-ILPLPVLLFDERLSTAAVT 119
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ L++ + SR +R VD +AAA ILQ LD ++ L
Sbjct: 120 RTLLEADASRARRGDLVDKLAAAYILQGCLDVLAGL 155
>gi|257867380|ref|ZP_05647033.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257873711|ref|ZP_05653364.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257877460|ref|ZP_05657113.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257801436|gb|EEV30366.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257807875|gb|EEV36697.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257811626|gb|EEV40446.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 140
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G++ +G+A+SDP A + + L + ++ F++GLP
Sbjct: 1 MGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPR ++ A+ I+++ +P V+ DERLTTV A+++L++ N SR KR + +
Sbjct: 61 NMNNTIGPRAEASMAYGAA-IEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRKKVI 119
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 120 DKLAAVMILQNYLD 133
>gi|294012198|ref|YP_003545658.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S]
gi|292675528|dbj|BAI97046.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S]
Length = 156
Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 92/154 (59%), Gaps = 4/154 (2%)
Query: 1 MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
MSIL + ++L + +D+GTK IG+A+ D G A P + R K ++ +
Sbjct: 1 MSILTADRAAFREALPHGGRLIGLDVGTKTIGIALCDAGWSIASPAHTVSRGKFSKDKIA 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
L +F+ + + +IGLPLN++GSE PR ++RAF N+ D + +P +FWDER +T +
Sbjct: 61 LAAFMEQQQVKGVVIGLPLNLDGSESPRSQASRAFGRNIAD--LGLPILFWDERWSTQAV 118
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+ L++ + SR +R + VD +AA+ ILQ +D +
Sbjct: 119 TRTLLEADASRARRGELVDKLAASYILQGAIDGL 152
>gi|283835290|ref|ZP_06355031.1| putative Holliday junction resolvase [Citrobacter youngae ATCC
29220]
gi|291068448|gb|EFE06557.1| putative Holliday junction resolvase [Citrobacter youngae ATCC
29220]
Length = 138
Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + S D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLSFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|73662454|ref|YP_301235.1| Holliday junction resolvase-like protein [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|146291069|sp|Q49Y54|RUVX_STAS1 RecName: Full=Putative Holliday junction resolvase
gi|72494969|dbj|BAE18290.1| putative endonuclease involved in recombination [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 142
Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A + + L+ I +N+ +I
Sbjct: 3 KHKIIGLDVGSKTVGIAISDLMGWTAQGLDTLRIDEENNELGIEALVKIIKRDNVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLQYKEQLQEALPSLEIIMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD +
Sbjct: 123 KVIDKMAAVFILQGYLDSLQ 142
>gi|257870135|ref|ZP_05649788.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|257804299|gb|EEV33121.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
Length = 140
Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G++ +G+A+SDP A + + L + + F++GLP
Sbjct: 1 MGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDENDFGYDRLGELVKEYEVTRFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPR ++ A+ I+ + +P + DERLTTV A+++L++ N SR KR + +
Sbjct: 61 NMNNTIGPRAEASLAYGKA-IEERFDLPVDYQDERLTTVQAERMLVEQANTSRAKRKKVI 119
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 120 DKLAAVMILQNYLD 133
>gi|300718245|ref|YP_003743048.1| Holliday junction resolvase [Erwinia billingiae Eb661]
gi|299064081|emb|CAX61201.1| Putative Holliday junction resolvase [Erwinia billingiae Eb661]
Length = 140
Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG+AI A P L + T ++ + + ++GLPL
Sbjct: 5 TLLAFDFGTKSIGVAIGQQLTGTARPLAALKAQDGTPDWNKIEALLKEWEPDRVVVGLPL 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E P R F N I + V DERL+TV A+ L + R VD
Sbjct: 65 NMDGTEQPLTARARKFA-NRIHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKGSVD 123
Query: 138 SIAAALILQEVLDR 151
S++A +IL+ +
Sbjct: 124 SLSAVIILESWFEN 137
>gi|330814160|ref|YP_004358399.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
IMCC9063]
gi|327487255|gb|AEA81660.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
IMCC9063]
Length = 156
Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 1/151 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
+L D K + + ID G + +G+AI DP A P + KK+ EL
Sbjct: 6 LLENSDFAKLITEGSRLLGIDPGKRNVGIAICDPSHLIATPYETIQAKKLKNLLEELDKI 65
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I NI ++G P+NM+G+EGPR ST+ FV N+I ++P WDERL++V A + +
Sbjct: 66 IIENNIKGIVVGHPINMDGTEGPRSQSTKDFVKNIIK-HTHLPVTLWDERLSSVGAFKSM 124
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
D+ ++ + K+D +AA ILQ +D +
Sbjct: 125 QDLGINSSSKKDKLDENSAAFILQGFIDYLK 155
>gi|313884998|ref|ZP_07818750.1| RNAse H domain protein, YqgF family [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619689|gb|EFR31126.1| RNAse H domain protein, YqgF family [Eremococcus coleocola
ACS-139-V-Col8]
Length = 145
Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
+ I +D+G+K +G+A+SD A + + LL + + +IG
Sbjct: 5 ERIVGLDVGSKTVGVAMSDLLGWIAQGLETIRIDEEAGDFGFDRLLELLDQHQVKKVVIG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133
LP NMN + GPR +++ + ++D + + + DERLTT A+++L+ + NVSR KR
Sbjct: 65 LPKNMNNTIGPRAQASQRYGQKLLDIRPDLLIAYQDERLTTSQAERMLVSEGNVSRSKRK 124
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA +ILQ LD S
Sbjct: 125 KVIDKLAAVIILQNYLDANS 144
>gi|307292653|ref|ZP_07572499.1| Holliday junction resolvase YqgF [Sphingobium chlorophenolicum L-1]
gi|306880719|gb|EFN11935.1| Holliday junction resolvase YqgF [Sphingobium chlorophenolicum L-1]
Length = 156
Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 92/154 (59%), Gaps = 4/154 (2%)
Query: 1 MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
MS+L + ++L + +D+GTK IGLA+ D G A P + R K ++ +
Sbjct: 1 MSLLTADRALFREALPHGGRLIGLDVGTKTIGLALCDAGWSIASPAHTVSRGKFSKDKIA 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
L +F+ + + +IGLPLN++GSE PR ++RAF N+ D + +P +FWDER +T +
Sbjct: 61 LAAFMEQQQVKGVVIGLPLNLDGSESPRSQASRAFGRNIAD--LGLPILFWDERWSTQAV 118
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+ L++ + SR +R + VD +AA+ ILQ +D +
Sbjct: 119 TRTLLEADASRARREELVDKLAASYILQGAIDGL 152
>gi|301793470|emb|CBW35843.1| putative Holliday junction resolvase [Streptococcus pneumoniae
INV104]
Length = 136
Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + ++ Q + + T + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EEFFGLPLDYQDERLTTVAAERMLIEQADISRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|16766398|ref|NP_462013.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|167552011|ref|ZP_02345764.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167990376|ref|ZP_02571476.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|194442861|ref|YP_002042356.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|197265538|ref|ZP_03165612.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|200388976|ref|ZP_03215588.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204928137|ref|ZP_03219337.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|238909895|ref|ZP_04653732.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|32130052|sp|Q8ZM50|RUVX_SALTY RecName: Full=Putative Holliday junction resolvase
gi|226731652|sp|B4T5K4|RUVX_SALNS RecName: Full=Putative Holliday junction resolvase
gi|16421650|gb|AAL21972.1| putative endonuclease involved in recombination [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|194401524|gb|ACF61746.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|197243793|gb|EDY26413.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|199606074|gb|EDZ04619.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204322459|gb|EDZ07656.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205323262|gb|EDZ11101.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205331084|gb|EDZ17848.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|261248228|emb|CBG26065.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995262|gb|ACY90147.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301159652|emb|CBW19171.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312914119|dbj|BAJ38093.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|321225770|gb|EFX50824.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322613494|gb|EFY10435.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322621086|gb|EFY17944.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322624150|gb|EFY20984.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322628111|gb|EFY24900.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322633230|gb|EFY29972.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322636192|gb|EFY32900.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322639530|gb|EFY36218.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322647537|gb|EFY44026.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648721|gb|EFY45168.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322653776|gb|EFY50102.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657882|gb|EFY54150.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322663985|gb|EFY60184.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322669004|gb|EFY65155.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322673002|gb|EFY69109.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322678007|gb|EFY74070.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322681183|gb|EFY77216.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322687887|gb|EFY83854.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323131453|gb|ADX18883.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323194917|gb|EFZ80104.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323199621|gb|EFZ84711.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323202632|gb|EFZ87672.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323207881|gb|EFZ92827.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323212567|gb|EFZ97384.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323214950|gb|EFZ99698.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323222680|gb|EGA07045.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323225423|gb|EGA09655.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230562|gb|EGA14680.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323235087|gb|EGA19173.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323239126|gb|EGA23176.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323244516|gb|EGA28522.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323247131|gb|EGA31097.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323253386|gb|EGA37215.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323256307|gb|EGA40043.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323262517|gb|EGA46073.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323267387|gb|EGA50871.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323269209|gb|EGA52664.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|332989964|gb|AEF08947.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 138
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+AI A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|307702671|ref|ZP_07639623.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|307623787|gb|EFO02772.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
Length = 136
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQT-ALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + Q + + + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGAKL-EELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|223044086|ref|ZP_03614125.1| conserved hypothetical protein [Staphylococcus capitis SK14]
gi|314933782|ref|ZP_07841147.1| putative Holliday junction resolvase [Staphylococcus caprae C87]
gi|222442480|gb|EEE48586.1| conserved hypothetical protein [Staphylococcus capitis SK14]
gi|313653932|gb|EFS17689.1| putative Holliday junction resolvase [Staphylococcus caprae C87]
Length = 142
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A + ++ EL+ I + +I
Sbjct: 3 QHKIIGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQNELGIEELVDIIKKNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142
>gi|309791342|ref|ZP_07685865.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6]
gi|308226652|gb|EFO80357.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6]
Length = 148
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
Q + +D+G +RIG+A+SD A P + +Q + + + ++GL
Sbjct: 3 EQRLLGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAITMIARLVREHEVQGIVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL + G GP+ TR+F + +R+V +P + +DER TT A+Q+L +M V +KR Q+
Sbjct: 63 PLTLRGEIGPQAEQTRSFAQEL-ERQVGLPVMLFDERYTTTVAEQLLREMGVKPEKRKQQ 121
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA++ILQ+ LD I
Sbjct: 122 IDQVAASIILQDYLDHIR 139
>gi|300173637|ref|YP_003772803.1| putative Holliday junction resolvase [Leuconostoc gasicomitatum LMG
18811]
gi|299888016|emb|CBL91984.1| Putative Holliday junction resolvase [Leuconostoc gasicomitatum LMG
18811]
Length = 143
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G++ +G+++SDP A + + L I + + ++GL
Sbjct: 2 RILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDENEFGLQRLGEIIKEKQAKSVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN SEGPR + R + M++ + +P F DERLTTV A+++LI + +VSRKKR Q
Sbjct: 62 PKNMNNSEGPRAEAARNYA-KMVEERFELPTDFQDERLTTVQAERMLIEEADVSRKKRKQ 120
Query: 135 KVDSIAAALILQEVLD 150
+D IAA ILQ LD
Sbjct: 121 VIDKIAAEFILQNYLD 136
>gi|304320050|ref|YP_003853693.1| putative endonuclease [Parvularcula bermudensis HTCC2503]
gi|303298953|gb|ADM08552.1| putative endonuclease [Parvularcula bermudensis HTCC2503]
Length = 158
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P P+ +D G+K IG+A+S P RR A P + R K + A L + + IIG
Sbjct: 13 PKGPLLGLDPGSKTIGVAVSTPERRLATPVTVIRRTKFGKDAEALFALAEARGVVGLIIG 72
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+PLNM+GSEGPR S R F N+ R +P +WDERL++V+A++ L+ + SR +R +
Sbjct: 73 VPLNMDGSEGPRAQSARTFGRNLSQRGP-LPVAYWDERLSSVAAERALLATDTSRARRAE 131
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA ILQ LDR++
Sbjct: 132 VIDAHAATHILQGALDRLA 150
>gi|227484975|ref|ZP_03915291.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
ATCC 51172]
gi|227237130|gb|EEI87145.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
ATCC 51172]
Length = 139
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G K IG+A+SDP A P + R K + +I+ ++GL
Sbjct: 1 MSRIMGLDVGDKTIGVALSDPLFITAQPYETIKRTKAKFDIDRIEKIFVENDISLIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ +FV ++I +++ V+ DERLTT+ ++ +LIDM+V R+ R
Sbjct: 61 PKNMNNTMGPQSMRIISFV-DLIKKRIDTEIVYQDERLTTIQSESVLIDMSVRRENRKAH 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D IAA+ ILQ LDR +
Sbjct: 120 IDKIAASFILQTYLDRRN 137
>gi|315641319|ref|ZP_07896395.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM
15952]
gi|315482892|gb|EFU73412.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM
15952]
Length = 145
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G++ +G+A+SDP A + + + I F++GL
Sbjct: 2 RIMGLDVGSRTVGIAVSDPMGWTAQGIEIIKINEDEDNFGFDRVKELADQYEIGHFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPR ++ ++ + ++ +P + DERLTTV A+++LI+ N SR KR +
Sbjct: 62 PKNMNNTIGPRAEASMSYGEKL-EQLFGLPVSYQDERLTTVQAERMLIEQANASRAKRKK 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 121 VIDKLAAVMILQNFLD 136
>gi|311278135|ref|YP_003940366.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1]
gi|308747330|gb|ADO47082.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1]
Length = 138
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P L + T + +T A I+GL
Sbjct: 2 SGTLIAFDFGTKSIGVAVGQRITGTARPLSALKAQDGTPDWNAVEKILTEWQPDAVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + R V DERL+TV A+ L + R +
Sbjct: 62 PLNMDGTEQPLTARARKFANKLHGR-FGVKIELHDERLSTVEARAGLFEHGGYRALNKGR 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|254294342|ref|YP_003060365.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814]
gi|254042873|gb|ACT59668.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814]
Length = 150
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALEL 59
M+IL ++ L P P+ +D GTK IG+A +D R A P + + KK+ L
Sbjct: 1 MAILELDQ----LPPRGPLLGLDPGTKTIGIAAADGLRMIASPVETIKKGKKLAPALTRL 56
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+IGLP+NM+GS GPRV + RA N+++++ VP FWDERL+T + +
Sbjct: 57 FELYDDRVCVGLVIGLPVNMDGSHGPRVQAVRALARNILEKR-DVPIAFWDERLSTAAVE 115
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ L++ + SR KR + +D +AAA ILQ +DR+S
Sbjct: 116 RTLLEADTSRAKRAEVIDKMAAAYILQGAIDRLS 149
>gi|167747070|ref|ZP_02419197.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662]
gi|167654030|gb|EDR98159.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662]
Length = 138
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D GTK +G+A+SD A P + RK K+ +T + + ++G
Sbjct: 2 RILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIAAEYKVEKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R +T AF +++ R+ + + WDERL+TV++ ++L++ V R+ R +
Sbjct: 62 YPKNMNNTIGERGMATEAFRDSLV-RRTGLDVILWDERLSTVASNKVLMESGVRREHRKK 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +AA++ILQ LD +
Sbjct: 121 VIDQVAASMILQGYLDSL 138
>gi|313668473|ref|YP_004048757.1| hypothetical protein NLA_11710 [Neisseria lactamica ST-640]
gi|313005935|emb|CBN87392.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 151
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAEGLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA ILQ + S
Sbjct: 124 VLDQVAAQAILQSFFEGGS 142
>gi|170016827|ref|YP_001727746.1| endonuclease [Leuconostoc citreum KM20]
gi|226731627|sp|B1MXQ0|RUVX_LEUCK RecName: Full=Putative Holliday junction resolvase
gi|169803684|gb|ACA82302.1| Predicted endonuclease [Leuconostoc citreum KM20]
Length = 143
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G++ +G+A+SDP A + + + L I + ++GL
Sbjct: 2 RLLGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKEFGLARLGEIIKEKQAKGVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN SEGPR + R + M++ + +P F DERLTTV A+++L+ + +VSRKKR Q
Sbjct: 62 PKNMNNSEGPRAEAARQYAQ-MVEDQFNLPTDFQDERLTTVQAERMLVEEADVSRKKRKQ 120
Query: 135 KVDSIAAALILQEVLD 150
+D IAA ILQ LD
Sbjct: 121 VIDKIAAEFILQNYLD 136
>gi|301300898|ref|ZP_07207070.1| RNAse YqgF [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851497|gb|EFK79209.1| RNAse YqgF [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 147
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 4/143 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73
+ +D+G++ +G+A+SD A + + Q + + + F++
Sbjct: 1 MGRLMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
GLP NMN + GPRV + +A+ ++ K +P F DERLTTV A+++L++ + SRKKR
Sbjct: 61 GLPKNMNNTSGPRVEAAKAYGE-LLKEKFNLPIDFIDERLTTVEAERMLVEQADASRKKR 119
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
+ +D +AA+LILQ LD L
Sbjct: 120 KKVIDKLAASLILQNYLDAKGKL 142
>gi|227514537|ref|ZP_03944586.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum
ATCC 14931]
gi|227087094|gb|EEI22406.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum
ATCC 14931]
Length = 145
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 82/141 (58%), Gaps = 4/141 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A SDP A + + + + + + +A F++GL
Sbjct: 2 RLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN +EGPRV + R + +++ + +P + DERLTTV A ++L+ + +VSR+K+ +
Sbjct: 62 PKNMNNTEGPRVEAARHYGE-LLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKK 120
Query: 135 KVDSIAAALILQEVLDRISFL 155
+D +AA LILQ LDR L
Sbjct: 121 VIDELAATLILQNYLDRHGKL 141
>gi|261377526|ref|ZP_05982099.1| putative Holliday junction resolvase [Neisseria cinerea ATCC 14685]
gi|269146263|gb|EEZ72681.1| putative Holliday junction resolvase [Neisseria cinerea ATCC 14685]
Length = 151
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PQGTALAFDFGEARIGVAQGDTELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAEGLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA ILQ + S
Sbjct: 124 VLDQVAAQAILQSFFEGGS 142
>gi|118597213|sp|Q1WT34|RUVX_LACS1 RecName: Full=Putative Holliday junction resolvase
Length = 147
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 4/143 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73
+ +D+G++ +G+A+SD A + + Q + + + F++
Sbjct: 1 MGRLMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
GLP NMN + GPRV + +A+ +++ K +P F DERLTTV A+++L++ + SRKKR
Sbjct: 61 GLPKNMNNTSGPRVEAAKAYGE-LLEEKFNLPIDFIDERLTTVEAERMLVEQADASRKKR 119
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
+ +D +AA+LILQ LD L
Sbjct: 120 KKVIDKLAASLILQNYLDAKGKL 142
>gi|304316717|ref|YP_003851862.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778219|gb|ADL68778.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 140
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G K IG+AISDP A + R + LE+ + ++G P
Sbjct: 2 RTIGLDVGDKTIGVAISDPSGLIAQGIKTIKRSNLDDDILEIKRIANSFKAEEIVVGFPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMNG+ G + FV + +++ +P + WDERLTTV A ++LI+ ++ R KR + +
Sbjct: 62 NMNGTIGSQGQKVINFVEVL-KKEINLPIMLWDERLTTVEASRMLIEGADMRRDKRKKVI 120
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD
Sbjct: 121 DKLAATIILQGYLDHKR 137
>gi|296314469|ref|ZP_06864410.1| putative Holliday junction resolvase [Neisseria polysaccharea ATCC
43768]
gi|296838766|gb|EFH22704.1| putative Holliday junction resolvase [Neisseria polysaccharea ATCC
43768]
Length = 151
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAEGLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA ILQ + S
Sbjct: 124 VLDQVAAQAILQSFFEGGS 142
>gi|258538956|ref|YP_003173455.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
Lc 705]
gi|257150632|emb|CAR89604.1| Holliday junction resolvase [Lactobacillus rhamnosus Lc 705]
gi|328469825|gb|EGF40739.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
MTCC 5462]
Length = 144
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G++ +G+A+SDP A + + Q L +T + AF++GL
Sbjct: 2 RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN S GPR ++A+ +++ +P F DERLTTV A ++LI + + SRK++ Q
Sbjct: 62 PKNMNNSIGPRAEKSQAYG-DLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 121 VIDKLAAQMILQNYLD 136
>gi|260663394|ref|ZP_05864285.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
gi|260552246|gb|EEX25298.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
Length = 145
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A SDP A + + + + + + +A ++GL
Sbjct: 2 RLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGIVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN +EGPRV + R + +++ + +P + DERLTTV A ++L+ + +VSR+K+ +
Sbjct: 62 PKNMNNTEGPRVEAARHYGE-LLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKK 120
Query: 135 KVDSIAAALILQEVLDRISFL 155
+D +AA LILQ LDR L
Sbjct: 121 VIDELAATLILQNYLDRHGKL 141
>gi|242373916|ref|ZP_04819490.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis M23864:W1]
gi|242348470|gb|EES40072.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis M23864:W1]
Length = 142
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A + ++ +L+ I + +I
Sbjct: 3 KHKIIGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQNELGIEKLVEIIQDNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142
>gi|116494331|ref|YP_806065.1| Holliday junction resolvase-like protein [Lactobacillus casei ATCC
334]
gi|191637663|ref|YP_001986829.1| Holliday junction resolvase-like protein [Lactobacillus casei BL23]
gi|227534480|ref|ZP_03964529.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239629714|ref|ZP_04672745.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301065842|ref|YP_003787865.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang]
gi|122264241|sp|Q03AZ9|RUVX_LACC3 RecName: Full=Putative Holliday junction resolvase
gi|226731624|sp|B3WC70|RUVX_LACCB RecName: Full=Putative Holliday junction resolvase
gi|116104481|gb|ABJ69623.1| RNase H-like ribonuclease [Lactobacillus casei ATCC 334]
gi|190711965|emb|CAQ65971.1| Putative Holliday junction resolvase [Lactobacillus casei BL23]
gi|227187879|gb|EEI67946.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239528400|gb|EEQ67401.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300438249|gb|ADK18015.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang]
gi|327381721|gb|AEA53197.1| Putative Holliday junction resolvase [Lactobacillus casei LC2W]
gi|327384886|gb|AEA56360.1| Putative Holliday junction resolvase [Lactobacillus casei BD-II]
Length = 144
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
+ +D+G++ +G+A+SDP A + + + L + + AF++GL
Sbjct: 2 RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKEQFGIARLKELVKQYEVTAFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN S GPR ++A+ ++ +P F DERLTTV A ++LI + + SRK++ Q
Sbjct: 62 PKNMNNSIGPRAEKSQAYGE-LLKTTFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 121 VIDKLAAQMILQNYLD 136
>gi|290968330|ref|ZP_06559871.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L]
gi|290781605|gb|EFD94192.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L]
Length = 143
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 71/133 (53%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G+K IG+A SD A + RK L + T + ++G P
Sbjct: 4 RILGLDIGSKTIGVACSDALGITAQGITTIQRKTAQDDWQRLQALATERRVTRMVVGRPR 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+MNG + V AF+ + + + FV+WDERLTT+ A+Q+L+ V R+KR Q VD
Sbjct: 64 HMNGEDSENVKQIEAFITYLKRQMPAMEFVYWDERLTTMMARQVLMAGGVRREKRKQFVD 123
Query: 138 SIAAALILQEVLD 150
+AA LILQ LD
Sbjct: 124 KMAAILILQNYLD 136
>gi|167855791|ref|ZP_02478544.1| Holliday junction resolvase-like protein [Haemophilus parasuis
29755]
gi|167853070|gb|EDS24331.1| Holliday junction resolvase-like protein [Haemophilus parasuis
29755]
Length = 138
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + + D GT IG A+ A + ++ I ++GL
Sbjct: 2 SQTVLAFDFGTNSIGCAVGQSITGTAQGLSAFKAQDGIPNWEQIGKVIAQWQPDLLVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P + F + + + +P DERLTTV A+ + + + K
Sbjct: 62 PLNMDGTEQPLTQRAKKFAKRL-NGRFNLPVELQDERLTTVEAKSEIFTRGGFKALKKGK 120
Query: 136 VDSIAAALILQEVLDRIS 153
VD+I+A LIL+ ++ S
Sbjct: 121 VDAISACLILESWFEQQS 138
>gi|323669743|emb|CBJ94867.1| conserved hypothetical protein [Salmonella bongori]
gi|327412913|emb|CAX67927.1| conserved hypothetical protein [Salmonella bongori]
Length = 138
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG+AI A P P L + T + + I+GLPL
Sbjct: 4 TLLAFDFGTKSIGVAIGQRITGTARPLPALKAQDGTPDWTLIERLLKEWQPDEIIVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E P R F N I + V DERL+TV A+ L + R KVD
Sbjct: 64 NMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARAGLFEQGGYRALNKGKVD 122
Query: 138 SIAAALILQEVLDR 151
S +A +IL+ ++
Sbjct: 123 SASAVIILESYFEQ 136
>gi|314936268|ref|ZP_07843615.1| putative Holliday junction resolvase [Staphylococcus hominis subsp.
hominis C80]
gi|313654887|gb|EFS18632.1| putative Holliday junction resolvase [Staphylococcus hominis subsp.
hominis C80]
Length = 142
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73
I +D+G++ +G+AISD A L + + L+S I N+ + +I
Sbjct: 3 RHKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEENEEFGIDRLVSIIKDNNVGSVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142
>gi|125972677|ref|YP_001036587.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC
27405]
gi|256004836|ref|ZP_05429810.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
2360]
gi|281416864|ref|ZP_06247884.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20]
gi|167012716|sp|A3DBR5|RUVX_CLOTH RecName: Full=Putative Holliday junction resolvase
gi|125712902|gb|ABN51394.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC
27405]
gi|255991146|gb|EEU01254.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
2360]
gi|281408266|gb|EFB38524.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20]
gi|316941087|gb|ADU75121.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
1313]
Length = 141
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLP 76
+ ID G RIG+AISDP A + R V + + + I+G P
Sbjct: 2 RVLGIDYGDSRIGIAISDPLGWTAQALETITWRSDVEVPLKRISELVEEYGVKTVIVGFP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NM+G+ G R T F+ + R + + WDERLTTV+A + + +M + + K+ V
Sbjct: 62 KNMDGTVGARGEKTIEFIDLLQQRIKDIEVIKWDERLTTVAANRTMYEMGIKKSKKKLVV 121
Query: 137 DSIAAALILQEVLDR 151
D IAA ILQ LD
Sbjct: 122 DQIAAVYILQGYLDS 136
>gi|237729880|ref|ZP_04560361.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226908486|gb|EEH94404.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 138
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + S D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLSFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWSLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVVILESYFEQ 136
>gi|325479225|gb|EGC82321.1| RNAse H domain protein, YqgF family [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 139
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G K IG+A+SDP A + + RKK + LL I ++ ++GL
Sbjct: 1 MSRIMGLDVGDKTIGVALSDPMFLLAQAKETIKRKKASLDIQRLLEIIDENDVNLIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ +FV +++ ++ V V+ DER+TT+ ++ +LIDM V R+ R Q
Sbjct: 61 PKNMNNTIGPQSMKVMSFV-DLLKKQTDVEIVYEDERMTTIQSESVLIDMKVRRENRKQY 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D IAA ILQ LDR
Sbjct: 120 IDKIAATFILQTYLDRRK 137
>gi|190149502|ref|YP_001968027.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307262821|ref|ZP_07544446.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|226725478|sp|B3H073|RUVX_ACTP7 RecName: Full=Putative Holliday junction resolvase
gi|189914633|gb|ACE60885.1| putative Holliday junction resolvase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306871836|gb|EFN03555.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 137
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I + D GT IG A+ A P + ++ I ++GLP
Sbjct: 3 RTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P + F + + + + +P DERLTTVSA+ + + + + KV
Sbjct: 63 LNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121
Query: 137 DSIAAALILQEVLD 150
DSI+A LIL+ +
Sbjct: 122 DSISACLILESWFE 135
>gi|184154999|ref|YP_001843339.1| endonuclease [Lactobacillus fermentum IFO 3956]
gi|226731625|sp|B2GB27|RUVX_LACF3 RecName: Full=Putative Holliday junction resolvase
gi|183226343|dbj|BAG26859.1| endonuclease [Lactobacillus fermentum IFO 3956]
Length = 145
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 80/136 (58%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A SDP A + + + + + + +A F++GL
Sbjct: 2 RLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN +EGPRV + R + +++ + +P + DERLTTV A ++L+ + +VSR+K+ +
Sbjct: 62 PKNMNNTEGPRVEAARHYGE-LLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKK 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 121 VIDELAATLILQNYLD 136
>gi|227891105|ref|ZP_04008910.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
ATCC 11741]
gi|227866979|gb|EEJ74400.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
ATCC 11741]
Length = 147
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 4/143 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73
+ +D+G++ +G+A+SD A + + Q + + + F++
Sbjct: 1 MGRLMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
GLP NMN + GPRV + +A+ ++ K +P F DERLTTV A+++L++ + SRKKR
Sbjct: 61 GLPKNMNNTSGPRVEAAKAYGE-LLKEKFNLPIDFIDERLTTVEAERMLVEQADASRKKR 119
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
+ +D +AA+LILQ LD L
Sbjct: 120 KKVIDKLAASLILQNYLDARGKL 142
>gi|291519256|emb|CBK74477.1| conserved hypothetical protein TIGR00250 [Butyrivibrio fibrisolvens
16/4]
Length = 142
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFI 72
I +D GTK +G+AISDP A + R++ + T + + + I
Sbjct: 1 MSRILGLDYGTKTVGVAISDPLLLTAQEFETITRERASALRHTLVRIKEICEEYQVEKII 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P NM+ SEG R T F +++++V +P DERLTTV A +IL + V++K R
Sbjct: 61 LGYPRNMDDSEGFRCEDTLEF-KKLLEKRVDIPIELVDERLTTVYADEILEESGVAKKDR 119
Query: 133 IQKVDSIAAALILQEVLDR 151
+ +D IAAA+ILQ+ LD
Sbjct: 120 KKVIDQIAAAIILQDYLDN 138
>gi|16761872|ref|NP_457489.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29143359|ref|NP_806701.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56415035|ref|YP_152110.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62181607|ref|YP_218024.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|161616061|ref|YP_001590026.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|168234352|ref|ZP_02659410.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168236165|ref|ZP_02661223.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168242900|ref|ZP_02667832.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168264457|ref|ZP_02686430.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168463716|ref|ZP_02697633.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168819873|ref|ZP_02831873.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194450224|ref|YP_002047085.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194469087|ref|ZP_03075071.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194734127|ref|YP_002116045.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197247485|ref|YP_002148011.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197363964|ref|YP_002143601.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|213027960|ref|ZP_03342407.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
gi|213163042|ref|ZP_03348752.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213420491|ref|ZP_03353557.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213424109|ref|ZP_03357002.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213580645|ref|ZP_03362471.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213648203|ref|ZP_03378256.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213850163|ref|ZP_03381061.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|224584890|ref|YP_002638689.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|289804300|ref|ZP_06534929.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
gi|289828650|ref|ZP_06546460.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|32130050|sp|Q8Z3V1|RUVX_SALTI RecName: Full=Putative Holliday junction resolvase
gi|62900917|sp|Q5PJJ7|RUVX_SALPA RecName: Full=Putative Holliday junction resolvase
gi|81309593|sp|Q57K19|RUVX_SALCH RecName: Full=Putative Holliday junction resolvase
gi|189046105|sp|A9N4P3|RUVX_SALPB RecName: Full=Putative Holliday junction resolvase
gi|226731647|sp|B5F5M2|RUVX_SALA4 RecName: Full=Putative Holliday junction resolvase
gi|226731651|sp|B4THI2|RUVX_SALHS RecName: Full=Putative Holliday junction resolvase
gi|226731653|sp|B5BFQ4|RUVX_SALPK RecName: Full=Putative Holliday junction resolvase
gi|226731654|sp|B4TV66|RUVX_SALSV RecName: Full=Putative Holliday junction resolvase
gi|254767524|sp|C0PY74|RUVX_SALPC RecName: Full=Putative Holliday junction resolvase
gi|25306239|pir||AI0877 conserved hypothetical protein STY3250 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504174|emb|CAD02921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138993|gb|AAO70561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56129292|gb|AAV78798.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62129240|gb|AAX66943.1| putative endonuclease involved in recombination [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161365425|gb|ABX69193.1| hypothetical protein SPAB_03862 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194408528|gb|ACF68747.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194455451|gb|EDX44290.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194709629|gb|ACF88850.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195633281|gb|EDX51695.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197095441|emb|CAR61000.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197211188|gb|ACH48585.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197290851|gb|EDY30205.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|205331717|gb|EDZ18481.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205338254|gb|EDZ25018.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205343317|gb|EDZ30081.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205347041|gb|EDZ33672.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224469418|gb|ACN47248.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|320087529|emb|CBY97294.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|322716090|gb|EFZ07661.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
Length = 138
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG+AI A P P + + T + + I+GLPL
Sbjct: 4 TLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E P R F N I + V DERL+TV A+ L + R KVD
Sbjct: 64 NMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVD 122
Query: 138 SIAAALILQEVLDR 151
S +A +IL+ ++
Sbjct: 123 SASAVIILESYFEQ 136
>gi|199598089|ref|ZP_03211512.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
HN001]
gi|258507765|ref|YP_003170516.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
GG]
gi|199591015|gb|EDY99098.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
HN001]
gi|257147692|emb|CAR86665.1| Holliday junction resolvase [Lactobacillus rhamnosus GG]
gi|259649112|dbj|BAI41274.1| holliday junction resolvase-like protein [Lactobacillus rhamnosus
GG]
Length = 144
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G++ +G+A+SDP A + + Q L +T + AF++GL
Sbjct: 2 RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN S GPR ++A+ +++ +P F DERLTTV A ++LI + + SRK++ Q
Sbjct: 62 PKNMNNSIGPRAEKSQAYG-DLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 121 VIDKLAAQMILQNYLD 136
>gi|198242309|ref|YP_002217072.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205354020|ref|YP_002227821.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207858358|ref|YP_002245009.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|226731648|sp|B5FUW0|RUVX_SALDC RecName: Full=Putative Holliday junction resolvase
gi|226731649|sp|B5QY73|RUVX_SALEP RecName: Full=Putative Holliday junction resolvase
gi|226731650|sp|B5RE57|RUVX_SALG2 RecName: Full=Putative Holliday junction resolvase
gi|197936825|gb|ACH74158.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205273801|emb|CAR38796.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206710161|emb|CAR34517.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326624844|gb|EGE31189.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326629133|gb|EGE35476.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 138
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG+AI A P P + + T + + + I+GLPL
Sbjct: 4 TLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWMLIERLLKEWQPDEIIVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E P R F N I + V DERL+TV A+ L + R KVD
Sbjct: 64 NMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVD 122
Query: 138 SIAAALILQEVLDR 151
S +A +IL+ ++
Sbjct: 123 SASAVIILESYFEQ 136
>gi|229553800|ref|ZP_04442525.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
LMS2-1]
gi|229312823|gb|EEN78796.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
LMS2-1]
Length = 144
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G++ +G+A+SDP A + + Q L +T + AF++GL
Sbjct: 2 RLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLTRLKELVTQYEVTAFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN S GPR ++A+ +++ +P F DERLTTV A ++LI + + SRK++ Q
Sbjct: 62 PKNMNNSIGPRAEKSQAYG-DLLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 121 VIDKLAAQMILQNYLD 136
>gi|227357858|ref|ZP_03842206.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906]
gi|227161968|gb|EEI46986.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906]
Length = 139
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + D GTK IG+AI A P K ++ I ++GL
Sbjct: 3 NRTVMGFDFGTKSIGVAIGQEVTGTARPLASFKAKDGIPDWSQIEKIIKEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E + F + + R V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQLVTTQAKKFANRLHGR-FGVQIALHDERLSTVEARAHLFEQGGYRSLDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ +R
Sbjct: 122 VDATSAVIILESWFER 137
>gi|268593081|ref|ZP_06127302.1| putative Holliday junction resolvase [Providencia rettgeri DSM
1131]
gi|291311350|gb|EFE51803.1| putative Holliday junction resolvase [Providencia rettgeri DSM
1131]
Length = 139
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P L ++ + I+GL
Sbjct: 3 GRTLLAFDFGTKSIGVAVGQEITGTARPLTSLKASDGRPDWQQIEKLLKEWQPQLVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F N I + V DERL+TV A+ L + R K
Sbjct: 63 PLNMDGTEQLVTSQARNFA-NRIHGRFGVKVELHDERLSTVEAKAGLFEQGGYRALSKGK 121
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 122 VDSASAVVILESWFEQ 137
>gi|328957194|ref|YP_004374580.1| Holliday junction resolvase-like protein [Carnobacterium sp. 17-4]
gi|328673518|gb|AEB29564.1| Holliday junction resolvase-like protein [Carnobacterium sp. 17-4]
Length = 140
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
+D+G+K +G+A+SDP A + + + + I + +IGL
Sbjct: 2 RTMGLDVGSKTVGVAVSDPFGWTAQGIEIVKINETQEEYGIERIGELIKIHEVTKVVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKKRIQ 134
P NMN S GPR ++ + +I +P + DERLTTV A+++LI+ SR KR +
Sbjct: 62 PKNMNNSIGPRAEASLRYAE-LIKETFNLPVILQDERLTTVQAERMLIEEGNTSRAKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ L++
Sbjct: 121 VIDKVAAVMILQNYLNQ 137
>gi|85858514|ref|YP_460716.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB]
gi|146325615|sp|Q2LR42|RUVX_SYNAS RecName: Full=Putative Holliday junction resolvase
gi|85721605|gb|ABC76548.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB]
Length = 150
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D G KRIG+A+ D A ++RK + S + T ++ +IG PL
Sbjct: 2 RILGLDYGEKRIGVALCDELGLTAQALTTVIRKSWRNDVGIIASLVRTYDVEKIVIGYPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
++G+EG + F + + + +P + WDE LTT A++IL V +KR VD
Sbjct: 62 RLDGTEGIQCEKVVRFARRL-EAALGIPVIRWDETLTTKEAEEILSRSGVPPRKRRGVVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA+LILQ LD IS
Sbjct: 121 RLAASLILQSYLDAIS 136
>gi|282882848|ref|ZP_06291453.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis
315-B]
gi|300814171|ref|ZP_07094454.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|281297259|gb|EFA89750.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis
315-B]
gi|300511828|gb|EFK39045.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 147
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D+G K IG+AISD A P + R + ++ I ++ ++GLP
Sbjct: 3 RVLGLDVGEKWIGVAISDETFTIATPLETIERTSNKEAYDKIHDLIEKYDVKKIVVGLPK 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GP + F + ++ + V+ DER+TT+ A+ +L++ +V R+ R + VD
Sbjct: 63 NMNNTLGPTCQMVQKFSEKLKNK-FRLELVYVDERMTTLMAKDVLMEASVRRENRKKYVD 121
Query: 138 SIAAALILQEVLDR 151
IAAA IL+ +D
Sbjct: 122 KIAAAFILKTYMDS 135
>gi|326693839|ref|ZP_08230844.1| putative Holliday junction resolvase [Leuconostoc argentinum KCTC
3773]
Length = 143
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G++ +G+A+SDP A + + L I + + ++GL
Sbjct: 2 RILGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEAEFGLERLGEIIKAKQVKGVVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN SEGPR + R + M++ +P F DERLTTV A+++LI + ++SRKKR Q
Sbjct: 62 PKNMNNSEGPRAEAARRYA-KMVEETFGLPTDFQDERLTTVQAERMLIEEADISRKKRKQ 120
Query: 135 KVDSIAAALILQEVLD 150
+D IAA ILQ LD
Sbjct: 121 VIDKIAAEFILQNYLD 136
>gi|32034409|ref|ZP_00134591.1| COG0816: Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126207719|ref|YP_001052944.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae L20]
gi|165975691|ref|YP_001651284.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|303251647|ref|ZP_07337820.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303252798|ref|ZP_07338958.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307245044|ref|ZP_07527138.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307247216|ref|ZP_07529266.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307251761|ref|ZP_07533664.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307253998|ref|ZP_07535846.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258453|ref|ZP_07540191.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307260688|ref|ZP_07542378.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|167012686|sp|A3MYV3|RUVX_ACTP2 RecName: Full=Putative Holliday junction resolvase
gi|226725479|sp|B0BSN8|RUVX_ACTPJ RecName: Full=Putative Holliday junction resolvase
gi|126096511|gb|ABN73339.1| putative Holliday junction resolvase [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165875792|gb|ABY68840.1| putative Holliday junction resolvase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|302648359|gb|EFL78555.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302649489|gb|EFL79672.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306854032|gb|EFM86243.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306856274|gb|EFM88427.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306860762|gb|EFM92772.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306863024|gb|EFM94970.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867458|gb|EFM99308.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306869609|gb|EFN01396.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 137
Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I + D GT IG A+ A P + ++ I ++GLP
Sbjct: 3 RTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE P + F + + + + +P DERLTTVSA+ + + + + KV
Sbjct: 63 LNMDGSEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121
Query: 137 DSIAAALILQEVLD 150
DSI+A LIL+ +
Sbjct: 122 DSISACLILESWFE 135
>gi|228475168|ref|ZP_04059894.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|228270779|gb|EEK12181.1| conserved hypothetical protein [Staphylococcus hominis SK119]
Length = 142
Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73
I +D+G++ +G+AISD A L + + L+S I N+ + +I
Sbjct: 3 RHKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEEDEEFGIDRLVSIIKDNNVGSVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142
>gi|309389102|gb|ADO76982.1| Holliday junction resolvase YqgF [Halanaerobium praevalens DSM
2228]
Length = 135
Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ID G KR+G+A+SD A P L + +E+ +I ++ I+G+P
Sbjct: 2 RILGIDYGNKRVGIAVSDALGWTAQPLVTLKMNGHQKLLVEIKKYIDKYDVEKIIVGMPY 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
N++GS G R T+AF+ N ++ ++ +P DERLTT AQ IL++ +VSR+ R + +D
Sbjct: 62 NLDGSRGKRAEITQAFI-NFLNNQLEIPIQIQDERLTTKQAQNILLEADVSRQGRKKVID 120
Query: 138 SIAAALILQEVLDRI 152
+AA+LILQ LD +
Sbjct: 121 KLAASLILQSYLDSL 135
>gi|170765861|ref|ZP_02900672.1| putative Holliday junction resolvase [Escherichia albertii TW07627]
gi|170125007|gb|EDS93938.1| putative Holliday junction resolvase [Escherichia albertii TW07627]
Length = 138
Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWLPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVDVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|320109161|ref|YP_004184751.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4]
gi|319927682|gb|ADV84757.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4]
Length = 157
Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G +RIG+AISD A P L R + + A + GLPL
Sbjct: 13 RIMGLDIGDRRIGVAISDGLGLTAQPVFTLHRSNPREDIRSIARLTRKHEATAIVAGLPL 72
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+M+G P+ ++AF + R +P FWDERLT+ +A +IL R +D
Sbjct: 73 HMSGDLSPQAQKSQAFAQELAKR-TGLPLYFWDERLTSHAAHEILDVSGFGTTGRKAVID 131
Query: 138 SIAAALILQEVLD 150
+AA LILQ LD
Sbjct: 132 QVAAVLILQGFLD 144
>gi|296110666|ref|YP_003621047.1| Holliday junction resolvase-like protein [Leuconostoc kimchii IMSNU
11154]
gi|295832197|gb|ADG40078.1| Holliday junction resolvase-like protein [Leuconostoc kimchii IMSNU
11154]
Length = 143
Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G++ +G+A+SDP A + + + L I + ++GL
Sbjct: 2 RILGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKEFGLERLGEIIKDKQAKGVVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN SEGPR ++R + M+ K +P F DERLTTV A+++LI + N+SRKKR Q
Sbjct: 62 PKNMNNSEGPRAEASRLYA-KMVQDKFNLPIDFQDERLTTVQAERMLIEEANISRKKRKQ 120
Query: 135 KVDSIAAALILQEVLD 150
+D IAA ILQ LD
Sbjct: 121 VIDKIAAEFILQNYLD 136
>gi|294084181|ref|YP_003550939.1| putative Holliday junction resolvase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663754|gb|ADE38855.1| Putative Holliday junction resolvase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 159
Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I + D+ +S+ Q + +D+G K IGLA+SD G + A P L R K T EL
Sbjct: 1 MPICKLNDVKQSISDGQRLLGLDIGKKTIGLALSDAGLKIATPVKILYRTKFTPDVAELF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ +N+ ++G P+NM+GS GPR STR F + ++ R VP F DERL+T + +
Sbjct: 61 KLVDEQNVGGLVLGWPVNMDGSTGPRCDSTRDFAYALM-RIRDVPVFFQDERLSTQAVES 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+I +++R KR + D++AA ILQ LD I
Sbjct: 120 AMIAADMTRAKRAVRRDALAAGWILQSALDTI 151
>gi|317049426|ref|YP_004117074.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b]
gi|316951043|gb|ADU70518.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b]
Length = 138
Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + D GTK IG+A+ A L + T ++ + ++GL
Sbjct: 3 SETLLGFDFGTKSIGVAVGQQLTGTARALTALKAQDGTPDWGQIERLLKEWQPDYVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE R F + + R V DERL+TV A+ L + R +
Sbjct: 63 PLNMDGSEQELTARARKFANRLHGR-FGVRVELQDERLSTVEARAGLFERGGYRALQKGA 121
Query: 136 VDSIAAALILQEVLD 150
VDS +A +IL++ D
Sbjct: 122 VDSQSAVIILEDWFD 136
>gi|326201373|ref|ZP_08191245.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM
2782]
gi|325988941|gb|EGD49765.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM
2782]
Length = 142
Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLP 76
I ID G RIG+AISDP A + K+ + + L L I + +IG P
Sbjct: 2 RILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKESLKKAVLRLSEIIKEYGVTDIVIGYP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+NMNG++GPR T F+ + D + WDERLTTVSA + + ++ + K+ V
Sbjct: 62 INMNGTKGPRTERTEEFIKKISD-FGEFNIIKWDERLTTVSAHRTMNELGIKASKKKDIV 120
Query: 137 DSIAAALILQEVLDRIS 153
D+++A LILQ LDR++
Sbjct: 121 DTMSAVLILQGYLDRMA 137
>gi|67923975|ref|ZP_00517429.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501]
gi|67854195|gb|EAM49500.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501]
Length = 143
Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KRIG+A D A + RK Q +L + +T N+ ++GLP M
Sbjct: 7 LGLDVGKKRIGVAGCDGTGLIATGLTTIERKSFPQDVQQLQALVTERNVQLLVVGLPYCM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + F I + + +P + DERLT+V A+ L + VD +
Sbjct: 67 DGSIGFQAKQVQKFAKR-ISKALELPVEYMDERLTSVEAETHLKAQKKYSRHNKGLVDRL 125
Query: 140 AAALILQEVLDRISF 154
AA +ILQ+ LD+
Sbjct: 126 AATIILQQWLDQRRA 140
>gi|125623030|ref|YP_001031513.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
cremoris MG1363]
gi|167012732|sp|A2RHM2|RUVX_LACLM RecName: Full=Putative Holliday junction resolvase
gi|124491838|emb|CAL96758.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
cremoris MG1363]
gi|300069777|gb|ADJ59177.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 143
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+++SD A P + L I ++GL
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R ++R + + ++ + + DERLTT A+++LID V RK R +
Sbjct: 64 PKHMNGDEGIRAEASRDYGTKLANK-FGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122
Query: 136 VDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 123 IDKLAAVLILQNYLD 137
>gi|261401282|ref|ZP_05987407.1| putative Holliday junction resolvase [Neisseria lactamica ATCC
23970]
gi|269208768|gb|EEZ75223.1| putative Holliday junction resolvase [Neisseria lactamica ATCC
23970]
Length = 151
Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAESLLSEARVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D AA ILQ +
Sbjct: 124 VLDQAAAQAILQSFFE 139
>gi|331701290|ref|YP_004398249.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929]
gi|329128633|gb|AEB73186.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929]
Length = 144
Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A+SD + + + + + + + F++GL
Sbjct: 2 RLMGLDVGSKTVGVAVSDQLGWTSQGVEIIRIDEDNKEFGLDRVSELVKKYQVDGFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN S GPR +++ + + D+ +P F DERLTTV AQ++L + +VSR KR +
Sbjct: 62 PKNMNNSLGPRAEASQQYGKRLEDK-FNLPVDFEDERLTTVEAQRMLTEEADVSRAKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LDR
Sbjct: 121 VIDKLAAGLILQNYLDR 137
>gi|260438499|ref|ZP_05792315.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM
2876]
gi|292809088|gb|EFF68293.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM
2876]
Length = 144
Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G++ +G+A+ DP A + RK K+ QT + N ++G
Sbjct: 2 RIIGLDFGSRTVGVAVCDPLMITAQGVEIIRRKEENKLRQTYARIEELCAEYNAERIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN + G RV T F + +R+ + V WDERLTTV+A +++ + R+ R +
Sbjct: 62 LPKNMNNTSGDRVDKTMDFKAAL-ERRTGLEVVMWDERLTTVAADNAMMEAGIRRENRKE 120
Query: 135 KVDSIAAALILQEVLDRISFLESS 158
VD IAA LILQ LD ++ +
Sbjct: 121 YVDMIAAQLILQGYLDSLAAEQKG 144
>gi|22127199|ref|NP_670622.1| Holliday junction resolvase-like protein [Yersinia pestis KIM 10]
gi|45443243|ref|NP_994782.1| Holliday junction resolvase-like protein [Yersinia pestis biovar
Microtus str. 91001]
gi|108806325|ref|YP_650241.1| Holliday junction resolvase-like protein [Yersinia pestis Antiqua]
gi|108813294|ref|YP_649061.1| Holliday junction resolvase-like protein [Yersinia pestis Nepal516]
gi|145597885|ref|YP_001161961.1| Holliday junction resolvase-like protein [Yersinia pestis Pestoides
F]
gi|149367054|ref|ZP_01889087.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125]
gi|153949472|ref|YP_001399818.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis IP 31758]
gi|162421693|ref|YP_001607683.1| Holliday junction resolvase-like protein [Yersinia pestis Angola]
gi|165924969|ref|ZP_02220801.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937369|ref|ZP_02225933.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010339|ref|ZP_02231237.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212701|ref|ZP_02238736.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167400030|ref|ZP_02305548.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422013|ref|ZP_02313766.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426704|ref|ZP_02318457.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468156|ref|ZP_02332860.1| hypothetical protein YpesF_09714 [Yersinia pestis FV-1]
gi|170023085|ref|YP_001719590.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis YPIII]
gi|218928109|ref|YP_002345984.1| Holliday junction resolvase-like protein [Yersinia pestis CO92]
gi|229837629|ref|ZP_04457791.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A]
gi|229840856|ref|ZP_04461015.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842584|ref|ZP_04462739.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229903757|ref|ZP_04518870.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516]
gi|270487535|ref|ZP_06204609.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27]
gi|294502900|ref|YP_003566962.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003]
gi|32130051|sp|Q8ZHG2|RUVX_YERPE RecName: Full=Putative Holliday junction resolvase
gi|124107446|sp|Q1CB76|RUVX_YERPA RecName: Full=Putative Holliday junction resolvase
gi|124107447|sp|Q1CEW9|RUVX_YERPN RecName: Full=Putative Holliday junction resolvase
gi|167016518|sp|A7FEZ0|RUVX_YERP3 RecName: Full=Putative Holliday junction resolvase
gi|167016519|sp|A4TI76|RUVX_YERPP RecName: Full=Putative Holliday junction resolvase
gi|226695321|sp|A9R307|RUVX_YERPG RecName: Full=Putative Holliday junction resolvase
gi|226695322|sp|B1JNP5|RUVX_YERPY RecName: Full=Putative Holliday junction resolvase
gi|21960265|gb|AAM86873.1|AE013933_10 hypothetical protein y3323 [Yersinia pestis KIM 10]
gi|45438111|gb|AAS63659.1| Predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Yersinia pestis biovar Microtus str. 91001]
gi|108776942|gb|ABG19461.1| hypothetical protein YPN_3134 [Yersinia pestis Nepal516]
gi|108778238|gb|ABG12296.1| hypothetical protein YPA_0328 [Yersinia pestis Antiqua]
gi|115346720|emb|CAL19603.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145209581|gb|ABP38988.1| hypothetical protein YPDSF_0578 [Yersinia pestis Pestoides F]
gi|149290668|gb|EDM40744.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125]
gi|152960967|gb|ABS48428.1| conserved hypothetical protein TIGR00250 [Yersinia
pseudotuberculosis IP 31758]
gi|162354508|gb|ABX88456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis Angola]
gi|165914843|gb|EDR33456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923169|gb|EDR40320.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990825|gb|EDR43126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205993|gb|EDR50473.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960150|gb|EDR56171.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050738|gb|EDR62146.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054307|gb|EDR64126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749619|gb|ACA67137.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis
YPIII]
gi|229679527|gb|EEO75630.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516]
gi|229690894|gb|EEO82948.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229697222|gb|EEO87269.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229704317|gb|EEO91328.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A]
gi|262360935|gb|ACY57656.1| Holliday junction resolvase-like protein [Yersinia pestis D106004]
gi|262364875|gb|ACY61432.1| Holliday junction resolvase-like protein [Yersinia pestis D182038]
gi|270336039|gb|EFA46816.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27]
gi|294353359|gb|ADE63700.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003]
gi|320013981|gb|ADV97552.1| putative Holliday junction resolvase [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 140
Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG+AI A + T ++ + ++GL
Sbjct: 3 NRTIIAFDFGTKSIGVAIGQEVTGTARALTAFKAQDGTPDWQQVEKLLKEWQPNLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + R V DERL+TV A+ L D R
Sbjct: 63 PLNMDGTEQPLTARARRFANRLHGR-FGVQVALQDERLSTVEARANLFDRGGYRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ D
Sbjct: 122 VDAASAVIILESWFDE 137
>gi|297616549|ref|YP_003701708.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM
12680]
gi|297144386|gb|ADI01143.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM
12680]
Length = 144
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D G KRIG+AISD A P + R + + T + ++GLPL
Sbjct: 2 RILGLDPGEKRIGVAISDALGITAQPLTSIQRSSLKADIEAIRQICETYQVEHIVLGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
N+NGS G + + + + + WDERL+T + Q +L++ + SR+KR + VD
Sbjct: 62 NLNGSRGEKAAQSAKLAQEL-KEHLSLEVTLWDERLSTKAVQGVLLEADTSRRKRKRVVD 120
Query: 138 SIAAALILQEVLDRI 152
+AAA ILQ LDRI
Sbjct: 121 KLAAAYILQGYLDRI 135
>gi|220929652|ref|YP_002506561.1| Holliday junction resolvase-like protein [Clostridium
cellulolyticum H10]
gi|254767508|sp|B8I4S7|RUVX_CLOCE RecName: Full=Putative Holliday junction resolvase
gi|219999980|gb|ACL76581.1| Holliday junction resolvase YqgF [Clostridium cellulolyticum H10]
Length = 142
Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLP 76
I ID G RIG+AISDP A + K + + L L I ++ +IG P
Sbjct: 2 RILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKDSLKKAVLRLSEIINEYSVTDIVIGYP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+NMNG++GPR T F+ + D + WDERLTTVSA + + ++ + K+ V
Sbjct: 62 INMNGTKGPRTERTEEFIKKISD-LGQFNIIKWDERLTTVSAHRTMNELGIKASKKKGIV 120
Query: 137 DSIAAALILQEVLDRIS 153
D+++A LILQ LDRI+
Sbjct: 121 DTMSAVLILQGYLDRIA 137
>gi|85060002|ref|YP_455704.1| Holliday junction resolvase-like protein [Sodalis glossinidius str.
'morsitans']
gi|146325608|sp|Q2NRC6|RUVX_SODGM RecName: Full=Putative Holliday junction resolvase
gi|84780522|dbj|BAE75299.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 141
Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I + D GT+ IG+AI A P + ++ + ++GLP
Sbjct: 5 GSIMAFDFGTRSIGVAIGQRVTCTARPLTAFKARDGVPDWQQIEKLLKEWRPETVVVGLP 64
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE P R F + M R V V DERL+TV A+ L + R KV
Sbjct: 65 LNMDGSEQPLTARVRKFANRMHGR-FGVQVVLHDERLSTVEARAGLFERGGYRALEKGKV 123
Query: 137 DSIAAALILQEVLDR 151
D+ +A +IL+ L++
Sbjct: 124 DAGSAVIILESWLEQ 138
>gi|295695754|ref|YP_003588992.1| Holliday junction resolvase YqgF [Bacillus tusciae DSM 2912]
gi|295411356|gb|ADG05848.1| Holliday junction resolvase YqgF [Bacillus tusciae DSM 2912]
Length = 157
Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G RIG+A+SDP A L + I + ++GL
Sbjct: 1 MSRILGLDVGRVRIGVAVSDPLGLVAQGLEVLAVDDEESALARIEGLIAEWGVERVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+ S G + T F + R V VP WDERLTTV A++ LID + R +R +
Sbjct: 61 PRNMDASLGAQGRYTEEFAEKLRHR-VRVPVDLWDERLTTVVAEKTLIDAGLRRARRKKV 119
Query: 136 VDSIAAALILQEVLD 150
VD +AA ++LQ LD
Sbjct: 120 VDQVAATVLLQSYLD 134
>gi|225017619|ref|ZP_03706811.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum
DSM 5476]
gi|224949584|gb|EEG30793.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum
DSM 5476]
Length = 145
Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D G R GLA+ D A P + + + ++ ++G P
Sbjct: 2 KIMAVDFGDARTGLAVCDRTEFLASPIGTIQERDFNMAVCKTAVAAKEYDVKMVVVGYPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GS G R F + + +P WDER TTVSA Q L ++NV +KR + VD
Sbjct: 62 NMDGSCGERAKKCEEFAKRL-GEMIPLPIKLWDERQTTVSAHQFLNEVNVRGQKRKEVVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA +IL+ L+
Sbjct: 121 EVAATIILESYLEYRK 136
>gi|229117883|ref|ZP_04247245.1| Holliday junction resolvase [Bacillus cereus Rock1-3]
gi|228665540|gb|EEL21020.1| Holliday junction resolvase [Bacillus cereus Rock1-3]
Length = 130
Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
GTK +G+A+SD A + ++ + + N+ ++GLP NMNG+
Sbjct: 2 GTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLPKNMNGT 61
Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
GPR + + F N+ + + + V WDERL+T++A+++LI +VSRKKR Q +D +AA
Sbjct: 62 IGPRGEACQQFAENLRE-LLQLDVVMWDERLSTMAAERLLISADVSRKKRKQVIDKMAAV 120
Query: 143 LILQEVLDR 151
+ILQ LD
Sbjct: 121 VILQGFLDS 129
>gi|300022168|ref|YP_003754779.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC
51888]
gi|299523989|gb|ADJ22458.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC
51888]
Length = 166
Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats.
Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
++ + + + + ID GTK +GLA+SD R A + R K T A LL+ T
Sbjct: 18 QEFIAAATASGRLIGIDGGTKTLGLALSDVTRTIASALETIRRTKFTADAARLLALATEH 77
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
+ ++GLP N++G+EGPR +TRA N+ ++ +P + WDERLTT A+++LID +
Sbjct: 78 GVTGLVLGLPRNLDGTEGPRAQATRALARNL-NKLSPLPILLWDERLTTAEAERMLIDAD 136
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRI 152
SRK+R + +D +AA +ILQ LDR+
Sbjct: 137 QSRKRRGEVIDKLAATIILQSALDRL 162
>gi|289550617|ref|YP_003471521.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis
HKU09-01]
gi|315658112|ref|ZP_07910984.1| crossover junction endodeoxyribonuclease [Staphylococcus
lugdunensis M23590]
gi|289180149|gb|ADC87394.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis
HKU09-01]
gi|315496441|gb|EFU84764.1| crossover junction endodeoxyribonuclease [Staphylococcus
lugdunensis M23590]
Length = 142
Score = 169 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 78/140 (55%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L + + +L + I + N+ +I
Sbjct: 3 QHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQEEYGIEQLTNIIKSNNVDTIVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + +++ + + WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASIHYKELILEAMPDMKVIMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSIQ 142
>gi|293374256|ref|ZP_06620584.1| RNAse YqgF [Turicibacter sanguinis PC909]
gi|325844837|ref|ZP_08168289.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
gi|292647089|gb|EFF65071.1| RNAse YqgF [Turicibacter sanguinis PC909]
gi|325489024|gb|EGC91412.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
Length = 143
Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGL 75
I +DLGT+ G+AISD AH ++ + + + T I+ ++GL
Sbjct: 2 KILGLDLGTRTCGIAISDALGMMAHGVETFRFEENHYKKAIQHVQELVKTHKISKIVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNGS G R T+ F + + V + WDERLTT+ +++LI +VSR KR +
Sbjct: 62 PKNMNGSIGERGQVTQEFAKKL-EEATNVTVILWDERLTTMQVERVLIQADVSRNKRKKV 120
Query: 136 VDSIAAALILQEVLDR 151
VD +AA +ILQ LD
Sbjct: 121 VDKMAATIILQSYLDS 136
>gi|152994576|ref|YP_001339411.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1]
gi|150835500|gb|ABR69476.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1]
Length = 156
Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 3/150 (2%)
Query: 2 SILLIEDLVKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
SI L + KPN + + D GT RIG+AI A P L K+ E+
Sbjct: 4 SISTGTSLDDNQKPNTVRSVLGFDFGTTRIGVAIGQSITGTAQPLDPLKAKEGIPNWDEI 63
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ AF++GLPL+M+GSE R F + R +P+ DERL++ A+
Sbjct: 64 TRIVEEWKPDAFVVGLPLDMDGSENEMCQRARKFAKRLHGR-FNLPYHMMDERLSSYEAK 122
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVL 149
+I +R + VD +AA +IL+
Sbjct: 123 GQVIARGGNRNFKENSVDGLAAQMILETWF 152
>gi|123443623|ref|YP_001007595.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|332162807|ref|YP_004299384.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|167016517|sp|A1JPT6|RUVX_YERE8 RecName: Full=Putative Holliday junction resolvase
gi|122090584|emb|CAL13453.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318604352|emb|CBY25850.1| putative Holliday junction resolvase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325667037|gb|ADZ43681.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330858997|emb|CBX69355.1| putative Holliday junction resolvase [Yersinia enterocolitica
W22703]
Length = 140
Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG+AI A + T ++ + ++GL
Sbjct: 3 NRTIVAFDFGTKSIGVAIGQEVTGTARALTSFKAQDGTPDWQKVEKLLKEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + R V DERL+TV A+ L D R
Sbjct: 63 PLNMDGTEQPLTARARRFANRLHGR-FGVQIALQDERLSTVEARANLFDSGGYRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ D
Sbjct: 122 VDAASAVIILESWFDE 137
>gi|51597519|ref|YP_071710.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis IP 32953]
gi|186896642|ref|YP_001873754.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis PB1/+]
gi|62900961|sp|Q666N9|RUVX_YERPS RecName: Full=Putative Holliday junction resolvase
gi|226695320|sp|B2K0T4|RUVX_YERPB RecName: Full=Putative Holliday junction resolvase
gi|51590801|emb|CAH22447.1| Putative endonuclease involved in recombination [Yersinia
pseudotuberculosis IP 32953]
gi|186699668|gb|ACC90297.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis
PB1/+]
Length = 140
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG+AI A + T ++ + ++GL
Sbjct: 3 NRTIIAFDFGTKSIGVAIGQEVTGTARALTAFKAQDGTPDWQQVEKLLKEWQPNLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + R V DERL+TV A+ L D R
Sbjct: 63 PLNMDGTEQPLTARARRFANRLHGR-FGVQIALQDERLSTVEARANLFDRGGYRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ D
Sbjct: 122 VDAASAVIILESWFDE 137
>gi|242237995|ref|YP_002986176.1| Holliday junction resolvase-like protein [Dickeya dadantii Ech703]
gi|242130052|gb|ACS84354.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech703]
Length = 139
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GT+ IG+AI A P L + T ++ + + I+GL
Sbjct: 3 NRTVMAFDFGTRSIGVAIGQEITGTARPLLSLKAQDGTPDWQKIEALLNEWQPDLVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + R V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQPITARARKFAQRLHGR-FGVAIQLHDERLSTVEARADLFERGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDRIS 153
VD+ +A +IL+ ++ S
Sbjct: 122 VDAASAVIILESWFEQQS 139
>gi|163790356|ref|ZP_02184788.1| Holliday junction resolvase-like protein [Carnobacterium sp. AT7]
gi|159874427|gb|EDP68499.1| Holliday junction resolvase-like protein [Carnobacterium sp. AT7]
Length = 140
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
+D+G+K +G+A+SDP A + + + + I + +IGL
Sbjct: 2 RTMGLDVGSKTVGVAVSDPFGWTAQGIEIVKINEAQEEYGIDRIGELIAIHEVTKVVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKKRIQ 134
P NMN S GPR ++ + ++ +P + DERLTTV A+++LI+ SR KR +
Sbjct: 62 PKNMNNSIGPRAEASLRYAE-LVKETFGLPVILQDERLTTVQAERMLIEEGNTSRAKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ L++
Sbjct: 121 VIDKVAAVMILQNYLNQ 137
>gi|206577149|ref|YP_002236600.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae
342]
gi|226730741|sp|B5XUA1|RUVX_KLEP3 RecName: Full=Putative Holliday junction resolvase
gi|206566207|gb|ACI07983.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae
342]
Length = 138
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D GTK IG+A+ A P P L + + + A I+GL
Sbjct: 2 SGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V V DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARNFANK-IHGRFGVAIVLHDERLSTVEARAGLFEHGGYRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVVILESYFEQ 136
>gi|33152804|ref|NP_874157.1| Holliday junction resolvase-like protein [Haemophilus ducreyi
35000HP]
gi|62901013|sp|Q7VKS6|RUVX_HAEDU RecName: Full=Putative Holliday junction resolvase
gi|33149028|gb|AAP96546.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 138
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I + D GT IG A+ + A + + I ++GLPL
Sbjct: 4 TILAFDFGTYSIGCAVGQSITKTAQSLTAFKSQDGIPNWQHIEKIIKEWQPDLLVVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSE P R F + + + + +P DERLTT A+ + + + K+D
Sbjct: 64 NMDGSEQPLTQRARKFANRL-NGRFNLPVALQDERLTTTEAKSEIFSRGGYKALKKDKID 122
Query: 138 SIAAALILQEVLDR 151
+I+A LIL+ D
Sbjct: 123 TISACLILESWFDN 136
>gi|281490614|ref|YP_003352594.1| YqgF family resolvase [Lactococcus lactis subsp. lactis KF147]
gi|161702205|gb|ABX75666.1| Resolvase, YqgF family [Lactococcus lactis subsp. lactis KF147]
Length = 143
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+++SD A P + L I ++GL
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R ++R + + + + + DERLTT A+++LID V RK R +
Sbjct: 64 PKHMNGDEGVRAEASRDYGTKLANE-FGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122
Query: 136 VDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 123 IDKLAAVLILQNYLD 137
>gi|326405717|gb|ADZ62788.1| YqgF family resolvase [Lactococcus lactis subsp. lactis CV56]
Length = 143
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+++SD A P + L I ++GL
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R ++R + + + + + DERLTT A+++LID V RK R +
Sbjct: 64 PKHMNGDEGIRAEASRDYGTKLANE-FGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122
Query: 136 VDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 123 IDKLAAVLILQNYLD 137
>gi|116491182|ref|YP_810726.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1]
gi|118587361|ref|ZP_01544787.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163]
gi|290890698|ref|ZP_06553768.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429]
gi|122276636|sp|Q04ER1|RUVX_OENOB RecName: Full=Putative Holliday junction resolvase
gi|116091907|gb|ABJ57061.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1]
gi|118432185|gb|EAV38925.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163]
gi|290479673|gb|EFD88327.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429]
Length = 144
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 82/144 (56%), Gaps = 4/144 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A SDP A + + L I+ + ++ +IGL
Sbjct: 2 RLLGLDVGSKTVGVAQSDPLGWTASSIEIIRINEAQGEFGLDRLGQIISEKKVSGIVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN +EGPRV ++R + M+ + +P + DERLT+V A ++LI + ++SR KR +
Sbjct: 62 PKNMNNTEGPRVEASRNYG-KMVSERFGLPIDYQDERLTSVEANRMLIEEADLSRAKRKK 120
Query: 135 KVDSIAAALILQEVLDRISFLESS 158
+DS+AA LILQ LD+ L +
Sbjct: 121 VIDSLAAQLILQNYLDKKGRLTNG 144
>gi|288933582|ref|YP_003437641.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22]
gi|290511351|ref|ZP_06550720.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
gi|288888311|gb|ADC56629.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22]
gi|289776344|gb|EFD84343.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
Length = 139
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D GTK IG+A+ A P P L + + + A I+GL
Sbjct: 3 SGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQPLTARARNFANK-IHGRFGVAIVLHDERLSTVEARAGLFEHGGYRALNKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 122 VDSASAVVILESYFEQ 137
>gi|261392384|emb|CAX49926.1| conserved hypothetical protein [Neisseria meningitidis 8013]
Length = 151
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + R +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGRRLHGR-FNLPVYWMDERLSSVYAESLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 124 VLDQVAAQAILHGFFE 139
>gi|156932611|ref|YP_001436527.1| Holliday junction resolvase-like protein [Cronobacter sakazakii
ATCC BAA-894]
gi|167012722|sp|A7MJR8|RUVX_ENTS8 RecName: Full=Putative Holliday junction resolvase
gi|156530865|gb|ABU75691.1| hypothetical protein ESA_00393 [Cronobacter sakazakii ATCC BAA-894]
Length = 138
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+AI A P + + + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRVTATARPLTAIKAQNGNPDWTLIEKLLKEWQPDDVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + R + DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARTFANRLHGR-FGIKVTLHDERLSTVEARAGLFERGGFRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVVILESYFEQ 136
>gi|90962084|ref|YP_536000.1| Holliday junction resolvase-like protein [Lactobacillus salivarius
UCC118]
gi|90821278|gb|ABD99917.1| Endonuclease involved in recombination [Lactobacillus salivarius
UCC118]
Length = 143
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G++ +G+A+SD A + + Q + + + F++GLP
Sbjct: 1 MGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV + +A+ +++ K +P F DERLTTV A+++L++ + SRKKR + +
Sbjct: 61 NMNNTSGPRVEAAKAYGE-LLEEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKVI 119
Query: 137 DSIAAALILQEVLDRISFL 155
D +AA+LILQ LD L
Sbjct: 120 DKLAASLILQNYLDAKGKL 138
>gi|94497357|ref|ZP_01303928.1| endonuclease [Sphingomonas sp. SKA58]
gi|94423220|gb|EAT08250.1| endonuclease [Sphingomonas sp. SKA58]
Length = 169
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 1 MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
M+++ I+ ++L + +D+GTK IGLA+ D A P + R K + +
Sbjct: 13 MTLVTIDRVAFRQALPHGGRLIGMDVGTKTIGLALCDAAWTIASPAYTVTRGKFGKDKIG 72
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
L +FI + + +IGLPLN++GS PR ++RAF HN+ D + +P + WDER +T +
Sbjct: 73 LAAFIDQQQVKGVVIGLPLNLDGSFSPRAQASRAFAHNIAD--LGLPILLWDERWSTQAV 130
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+ L++ + SR +R + VD +AA+ ILQ +D +
Sbjct: 131 TRTLLEADASRARRDELVDKLAASYILQGAIDGL 164
>gi|32130063|sp|Q9CJ63|RUVX_LACLA RecName: Full=Putative Holliday junction resolvase
Length = 143
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+++SD A P + L I ++GL
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R ++R + + + + + DERLTT A+++LID V RK+R +
Sbjct: 64 PKHMNGDEGIRAEASRDYGTKLANE-FGLEVAYQDERLTTAQAEKVLIDGGVRRKERKKS 122
Query: 136 VDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 123 IDKLAAVLILQNYLD 137
>gi|322834236|ref|YP_004214263.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602]
gi|321169437|gb|ADW75136.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602]
Length = 142
Score = 168 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GTK IGLAI A P + T ++ + ++GL
Sbjct: 3 NRTVFAFDFGTKSIGLAIGQEVTGTARPLTSFKAQDGTPDWQKIEKLLKEWLPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + R V DERL+TV A+ L D R
Sbjct: 63 PLNMDGTEQPLTARARKFANRLHGR-FGVQVELHDERLSTVEARADLFDRGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDAASAVIILESWFEK 137
>gi|116510965|ref|YP_808181.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11]
gi|123125957|sp|Q032W3|RUVX_LACLS RecName: Full=Putative Holliday junction resolvase
gi|116106619|gb|ABJ71759.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11]
Length = 143
Score = 168 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+++SD A P + L I ++GL
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R ++R + + + + + DERLTT A+++LID V RK R +
Sbjct: 64 PKHMNGDEGIRAEASRDYGTKLANE-FSLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122
Query: 136 VDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 123 IDKLAAVLILQNYLD 137
>gi|332637231|ref|ZP_08416094.1| Holliday junction resolvase-like protein [Weissella cibaria KACC
11862]
Length = 144
Score = 168 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFII 73
+ +D+G++ +G+A+SD A + + + + + F++
Sbjct: 1 MGRVMGLDVGSRTVGVAVSDLLGWTAQGVEIIRINEDEKEFGIARMKELVAQFQPTGFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKR 132
GLP NMN + GPRV + RA+ +++ +P F DERLTTV A+++L+ + + SRKKR
Sbjct: 61 GLPKNMNNTSGPRVDAARAYG-DLLTETFGLPIDFQDERLTTVEAERMLVEEADASRKKR 119
Query: 133 IQKVDSIAAALILQEVLDR 151
Q +D +AAALILQ LDR
Sbjct: 120 KQVIDKLAAALILQNYLDR 138
>gi|81428003|ref|YP_395002.1| Holliday junction resolvase-like protein [Lactobacillus sakei
subsp. sakei 23K]
gi|146325576|sp|Q38YN7|RUVX_LACSS RecName: Full=Putative Holliday junction resolvase
gi|78609644|emb|CAI54690.1| Hypothetical protein LCA_0389 [Lactobacillus sakei subsp. sakei
23K]
Length = 147
Score = 168 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ D+G++ +G+A+SD A + + + + + F++GL
Sbjct: 2 RLMGFDVGSRTVGIAVSDLFGWTAQGVEIIRINEDESEFGLDRVKELVAQHQVTGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN S GPR + + + + +P + DERLTTV A+++L++ + SRKKR Q
Sbjct: 62 PKNMNNSIGPRAVKAQEYGAMLTELFPEIPVDYIDERLTTVQAERMLVEQADTSRKKRKQ 121
Query: 135 KVDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 122 VIDKLAAVMILQNYLD 137
>gi|296104613|ref|YP_003614759.1| putative holliday junction resolvase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059072|gb|ADF63810.1| putative holliday junction resolvase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295097488|emb|CBK86578.1| conserved hypothetical protein TIGR00250 [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 138
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P L T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLTALKANDGTPDWNLIERLLKEWQPDDVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARKFANK-IHGRFGVSVKLHDERLSTVEARAGLFEHGGFRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|269837589|ref|YP_003319817.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM
20745]
gi|269786852|gb|ACZ38995.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM
20745]
Length = 143
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ S +P + + ++D+G +R+G+A+SD A P + K+ L++ I +
Sbjct: 1 MASSSQPGRRLIALDVGARRVGVAVSDELGLIASPVESVDMKRDGMD--RLVALIERYDP 58
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
IIGLPL M+G EGP+ +TRAF + R V P +FWDERLTT A Q LI+
Sbjct: 59 ERIIIGLPLGMSGREGPQAAATRAFAQQLRGR-VDRPIIFWDERLTTFMADQSLIEAGHR 117
Query: 129 RKKRIQKVDSIAAALILQEVLDRISF 154
R +R Q VD++AAALILQ LD
Sbjct: 118 RARRKQHVDAVAAALILQSYLDSQRA 143
>gi|253690074|ref|YP_003019264.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|259495709|sp|C6DFI9|RUVX_PECCP RecName: Full=Putative Holliday junction resolvase
gi|251756652|gb|ACT14728.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 139
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ I + D GTK IG+AI A P ++ ++ ++ ++G
Sbjct: 2 KSRTILAFDFGTKSIGVAIGQEITGTARPLTSFKAQEGIPDWQKVEKLLSEWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E P R F + + R V DERL+TV A+ L + +
Sbjct: 62 LPLNMDGTEQPLTARARKFANRLHGR-FGVAIALHDERLSTVEARADLFERGGFKALDKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 121 SVDAASAVIILESWFE 136
>gi|40889964|pdb|1VHX|A Chain A, Crystal Structure Of Putative Holliday Junction Resolvase
gi|40889965|pdb|1VHX|B Chain B, Crystal Structure Of Putative Holliday Junction Resolvase
Length = 150
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +DLGTK +G+A+SD A + + L I I ++G
Sbjct: 4 RILGLDLGTKTLGVALSDEXGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGF 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P N NG+ GPR +++ F + + VP V WDERLTT +A++ LI +VSR+KR +
Sbjct: 64 PKNXNGTVGPRGEASQTFAKVL-ETTYNVPVVLWDERLTTXAAEKXLIAADVSRQKRKKV 122
Query: 136 VDSIAAALILQEVLDRIS 153
+D AA ILQ LD ++
Sbjct: 123 IDKXAAVXILQGYLDSLN 140
>gi|148553525|ref|YP_001261107.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1]
gi|167016511|sp|A5V3V3|RUVX_SPHWW RecName: Full=Putative Holliday junction resolvase
gi|148498715|gb|ABQ66969.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1]
Length = 151
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M D +L +A +D+GT+ IG+A+ D G A P ++R K + A +L
Sbjct: 1 MISASTLDFRDALPDRGRLAGLDVGTRTIGVALCDAGWTIASPAETILRAKFSVDAAKLR 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + + +IGLPLN++GS+ PR S RAF N+ +P + WDER +T + +
Sbjct: 61 ALVAAQLVKGLVIGLPLNLDGSDSPRTQSVRAFARNV--EPFGLPILLWDERWSTQAVTR 118
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
L+D + SR +R + VD +AAA ILQ +D +
Sbjct: 119 TLLDADASRARRAELVDKLAAAYILQGAIDAM 150
>gi|196233674|ref|ZP_03132515.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428]
gi|196222344|gb|EDY16873.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428]
Length = 140
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ID G RIG+A+SD AHP + K+V + + +T++++ I+GL
Sbjct: 1 MKRALGIDHGDARIGVAVSDDLGMLAHPLETIHVKEVADPVARIATLVTSKDVGHIILGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+GS GP RAF + WDERLT+V+AQ+ L + K +
Sbjct: 61 PRNMDGSYGPAAEKVRAFAEKL-RAACGCEVKLWDERLTSVAAQRSLHEAGRKVKDSREV 119
Query: 136 VDSIAAALILQEVLDRISFL 155
+D +AA LILQ LD + L
Sbjct: 120 IDQVAAQLILQGWLDSQALL 139
>gi|271502145|ref|YP_003335171.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586]
gi|270345700|gb|ACZ78465.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586]
Length = 143
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GT+ IG+AI A P L + ++ + A I+GL
Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGIPDWQKVEKLLNEWQPALIIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + R V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQPLTARARKFSQRLQGR-FGVTVELHDERLSTVEARADLFERGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDAASAVIILESWFEQ 137
>gi|168702140|ref|ZP_02734417.1| hypothetical protein GobsU_21610 [Gemmata obscuriglobus UQM 2246]
Length = 169
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
S P + +D GTKRIG+A+ DP R A P + A
Sbjct: 10 SFPPRGALLGVDYGTKRIGVAVCDPDRVIASPVGTQANDATREPYFR--DLCARSKFAGV 67
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLPL+ +G E P RAF + D +P V WDER T+ +A+ L+ ++RKK
Sbjct: 68 VVGLPLHASGEESPMSGEARAFARWLSD-LTGLPVVMWDERHTSFAAESALLGAGLTRKK 126
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
R +KVD +AA +ILQ +D S
Sbjct: 127 RKEKVDRVAAQMILQTFIDAGS 148
>gi|309378826|emb|CBX22531.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 142
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D G RIG+A D +HP + + + + F++GLP++
Sbjct: 1 MAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVGLPVHT 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+E H +R F + R +P + DERL++V A+ +L + V KKR +D +
Sbjct: 61 DGTEHEMTHLSRKFGRRLHGR-FGLPVYWVDERLSSVYAESLLSEARVFGKKRKSVLDQV 119
Query: 140 AAALILQEVLD 150
AA ILQ +
Sbjct: 120 AAQAILQSFFE 130
>gi|257066431|ref|YP_003152687.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548]
gi|256798311|gb|ACV28966.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548]
Length = 139
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G K IG+A+SDP ++ + RKK + + + ++ ++GL
Sbjct: 1 MSRIMGLDVGNKTIGVALSDPMFLLSNALETIKRKKASVDIERIKQLVEENDVNLIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ +FV +++ ++V V V+ DER+TT+ ++ +L+DM V R+ R +
Sbjct: 61 PKNMNNTIGPQAMRVISFV-DLLKKQVDVEVVYEDERMTTIQSEAVLMDMEVRRENRKKY 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D IAA ILQ LDR
Sbjct: 120 IDKIAATFILQTYLDRRK 137
>gi|169824325|ref|YP_001691936.1| putative endonuclease involved in recombination [Finegoldia magna
ATCC 29328]
gi|297588302|ref|ZP_06946945.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
53516]
gi|167831130|dbj|BAG08046.1| putative endonuclease involved in recombination [Finegoldia magna
ATCC 29328]
gi|297573675|gb|EFH92396.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
53516]
Length = 137
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G + IG+AISDP A + RK + + I + ++ I+GL
Sbjct: 1 MERYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINDIIKEKEVSKIIVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ + FV + + + + DERLTTVSA ++LI+ NVSRKKR
Sbjct: 61 PKNMNNTIGPQAKKVKTFVKEL-RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDV 119
Query: 136 VDSIAAALILQEVLD 150
+DS+AA ILQ LD
Sbjct: 120 IDSVAATYILQTYLD 134
>gi|227874508|ref|ZP_03992680.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Oribacterium sinus F0268]
gi|227839652|gb|EEJ50110.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Oribacterium sinus F0268]
Length = 141
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 78/135 (57%), Gaps = 4/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I ++D G+K +GLAI+DP P + R+ K+ +T E+ + ++G
Sbjct: 2 RILALDYGSKTVGLAITDPLGIIVQPLKTIWREREGKLRKTVEEIQETCKEYQVEELVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +M+GSEG RV AF M+ +K+ +P +DERL+T+ A++IL + V + ++ +
Sbjct: 62 YPCHMDGSEGERVERVLAF-QEMLKKKIELPIHLYDERLSTMEAEEILRENGVPKDRQKE 120
Query: 135 KVDSIAAALILQEVL 149
+D +AA +IL++ L
Sbjct: 121 VLDQVAAQVILEDYL 135
>gi|85373365|ref|YP_457427.1| Holliday junction resolvase-like protein [Erythrobacter litoralis
HTCC2594]
gi|84786448|gb|ABC62630.1| hypothetical protein ELI_02690 [Erythrobacter litoralis HTCC2594]
Length = 167
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
+ +L + ++DLGTK IG A SD G RFA L R + + +L +++ N
Sbjct: 14 EYGDALPDGGVLLALDLGTKTIGTATSDAGWRFATAGKTLPRGRFGKDKAKLQEIVSSRN 73
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+A ++GLP NM+GSEGPR ++RA+ N+ + +P + WDER +T SA+ +I ++
Sbjct: 74 VAGLVLGLPRNMDGSEGPRAQASRAYARNLAEA-FGLPVLLWDERWSTQSAESAMIGQDM 132
Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
SR KR +K+DS AAA+ LQ LD ++
Sbjct: 133 SRAKRAEKIDSHAAAIFLQAALDTLA 158
>gi|152971900|ref|YP_001337009.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238896479|ref|YP_002921217.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
NTUH-K2044]
gi|262042599|ref|ZP_06015755.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|167012731|sp|A6TDV8|RUVX_KLEP7 RecName: Full=Putative Holliday junction resolvase
gi|150956749|gb|ABR78779.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238548799|dbj|BAH65150.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|259040033|gb|EEW41148.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 138
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D GTK IG+A+ A P P L + + + A I+GL
Sbjct: 2 SGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V + DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARNFANK-IHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVVILESYFEQ 136
>gi|307249444|ref|ZP_07531433.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858518|gb|EFM90585.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 137
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I + D GT IG ++ A P + ++ I ++GLP
Sbjct: 3 RTILAFDFGTYSIGCSVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE P + F + + + + +P DERLTTVSA+ + + + + KV
Sbjct: 63 LNMDGSEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121
Query: 137 DSIAAALILQEVLD 150
DSI+A LIL+ +
Sbjct: 122 DSISACLILESWFE 135
>gi|251788140|ref|YP_003002861.1| Holliday junction resolvase-like protein [Dickeya zeae Ech1591]
gi|247536761|gb|ACT05382.1| Holliday junction resolvase YqgF [Dickeya zeae Ech1591]
Length = 143
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GT+ IG+AI A P L + ++ + A I+GL
Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGIPDWQKVEKLLNEWQPALVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + R V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQPLTARARKFSQRLHGR-FGVNVELHDERLSTVEARADLFERGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDAASAVIILESWFEQ 137
>gi|227510199|ref|ZP_03940248.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227513127|ref|ZP_03943176.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
ATCC 11577]
gi|227524342|ref|ZP_03954391.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
ATCC 8290]
gi|227083702|gb|EEI19014.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
ATCC 11577]
gi|227088573|gb|EEI23885.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
ATCC 8290]
gi|227190404|gb|EEI70471.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 144
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A+SD + + + + + + F++GL
Sbjct: 2 RLMGLDVGSKTVGVAVSDSLGWTSQGVEIIPIDEENGEFGLERVAQLVDKYEVDGFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQ 134
P NMN S GPR ++ + + ++K +P F DERLTTV AQ++L + ++SR+KR +
Sbjct: 62 PKNMNNSLGPRAEASEQYGDRL-EKKFKLPVDFEDERLTTVEAQRMLTEEADISRRKRKK 120
Query: 135 KVDSIAAALILQEVLDRISFL 155
+D +AA LILQ LDR L
Sbjct: 121 VIDKLAAGLILQNYLDRKGKL 141
>gi|229825002|ref|ZP_04451071.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC
49176]
gi|229790749|gb|EEP26863.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC
49176]
Length = 140
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +DLG+K G+A++D A + RK K+ QT + + ++G
Sbjct: 2 RIMGLDLGSKTCGVAVTDGLGLTAQGLEVIRRKEENKLRQTLARITELTEEYKVEKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NM+GS R + F + R + + WDERLTTVSA +I+I+ + R++R +
Sbjct: 62 YPKNMDGSVSKRCELSEEFAKKLTGR-TGIEVILWDERLTTVSAHEIMIEAGLKREEREK 120
Query: 135 KVDSIAAALILQEVLD 150
VD +AA IL++ ++
Sbjct: 121 IVDKVAAVFILEDYMN 136
>gi|87198928|ref|YP_496185.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans
DSM 12444]
gi|146325585|sp|Q2G9X2|RUVX_NOVAD RecName: Full=Putative Holliday junction resolvase
gi|87134609|gb|ABD25351.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans
DSM 12444]
Length = 155
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ +L + +D GTK IG+A+ D RFA + R K ++
Sbjct: 1 MITQSALEMRDALAEGGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIR 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLPLNM+GSE PR RA N+ D + +P + WDER TT +A++
Sbjct: 61 AIVAERGVKGIVIGLPLNMDGSESPRSQGARAMARNLED--LGLPILLWDERWTTQAAER 118
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+I+ + SR KR +++DS AAALILQ +D ++
Sbjct: 119 AMIEQDFSRAKRAERIDSHAAALILQGAIDALA 151
>gi|226941795|ref|YP_002796869.1| Holliday junction resolvase-like protein [Laribacter hongkongensis
HLHK9]
gi|226716722|gb|ACO75860.1| Putative Holliday junction resolvase [Laribacter hongkongensis
HLHK9]
Length = 155
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
D G RIG+A+ D AHP L + + I I+ ++GLP +
Sbjct: 8 LGFDFGEARIGIAVGDRLVGIAHPLETLSAPDNDSRFARIAALIGEWQISGLVVGLPTHA 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+ R F + R +P V DER +++ A+ +L + +K+ +D +
Sbjct: 68 DGTPHEMTRLARRFAQRLHGR-FGLPVVLVDERHSSLLAEDLLRESGRRGRKQKPVLDQV 126
Query: 140 AAALILQEVLDR 151
AA +ILQ D+
Sbjct: 127 AAQVILQSFFDQ 138
>gi|261346262|ref|ZP_05973906.1| putative Holliday junction resolvase [Providencia rustigianii DSM
4541]
gi|282565570|gb|EFB71105.1| putative Holliday junction resolvase [Providencia rustigianii DSM
4541]
Length = 139
Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GTK IG+A+ A L ++ + I+GLP
Sbjct: 4 RTLLAFDFGTKSIGVAVGQEITGTARALTSLKANDGRPDWQQIEKLLKEWQPQLVIVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E R F N I + V DERL+TV A+ L + R KV
Sbjct: 64 LNMDGTEQLVTSQARNFA-NRIHGRFGVQVKLHDERLSTVEAKAGLFEQGGYRALSKGKV 122
Query: 137 DSIAAALILQEVLDR 151
DS +A +IL+ ++
Sbjct: 123 DSASAVVILESWFEQ 137
>gi|260599276|ref|YP_003211847.1| Holliday junction resolvase-like protein [Cronobacter turicensis
z3032]
gi|260218453|emb|CBA33583.1| Putative Holliday junction resolvase [Cronobacter turicensis z3032]
Length = 138
Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+AI A P + + + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRVTATARPLNAIKAQNGNPDWTIIERLLKEWQPDDVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + R + DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTSRARTFANRLHGR-FGIKVTLHDERLSTVEARAGLFERGGFRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVVILESYFEQ 136
>gi|260642386|ref|ZP_05415682.2| putative Holliday junction resolvase [Bacteroides finegoldii DSM
17565]
gi|260622253|gb|EEX45124.1| putative Holliday junction resolvase [Bacteroides finegoldii DSM
17565]
Length = 141
Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P I +ID G KR G+A+SD + A+ + ++ + +I E + IIG
Sbjct: 3 PMSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGDYIAKEPVERIIIG 59
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 60 LPKQMNNEVSENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQN 119
Query: 135 K--VDSIAAALILQEVLDRISF 154
K VD I+A +ILQ L+ F
Sbjct: 120 KALVDEISATIILQTYLESKRF 141
>gi|261342366|ref|ZP_05970224.1| putative Holliday junction resolvase [Enterobacter cancerogenus
ATCC 35316]
gi|288315001|gb|EFC53939.1| putative Holliday junction resolvase [Enterobacter cancerogenus
ATCC 35316]
Length = 138
Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P L T + + I+GL
Sbjct: 2 SGTLIAFDFGTKSIGVAVGQRITGTARPLTALKANDGTPDWNLIERLLKEWQPDDVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARKFANK-IHGRFGVSVKLHDERLSTVEARAGLFEHGGFRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|302671971|ref|YP_003831931.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus
B316]
gi|302396444|gb|ADL35349.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus
B316]
Length = 145
Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+AISD A R + RK K+ +T + I + ++G
Sbjct: 2 RIMGLDYGSKTVGVAISDELLLTAQGREIIRRKEENKLRRTLARIEELIVEYGVTKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+ + R F I+R+ +P V WDERLTTV A +I+ + + + R +
Sbjct: 62 LPLNMDQTPSERSQLCLEFKDK-IERRTGIPVVMWDERLTTVEADEIMDEAGIRGRDRKE 120
Query: 135 KVDSIAAALILQEVLDR 151
VD IAA +ILQ+ LD
Sbjct: 121 YVDMIAAQIILQDYLDN 137
>gi|330718936|ref|ZP_08313536.1| Holliday junction resolvase-like protein [Leuconostoc fallax KCTC
3537]
Length = 143
Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G++ +G+A+SDP A + + + L I ++GL
Sbjct: 2 RILGLDVGSRTVGVAVSDPMGWTAQGVEIIRIDEAAKEFGLERLGEIIQETKAKGVVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P NMN +EGPR + R + M++ + F DERLTTV A+++LI + +VSRKKR +
Sbjct: 62 PKNMNNTEGPRAQAARDYA-KMVEDNFGLSTDFQDERLTTVQAERMLIEEADVSRKKRKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D IAA ILQ LDR
Sbjct: 121 VIDKIAAEFILQNYLDR 137
>gi|304440513|ref|ZP_07400400.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304370991|gb|EFM24610.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 141
Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G K IG++ISD A + R + E+ + NI ++G+P+
Sbjct: 3 RFLGLDVGDKYIGVSISDTTCTIASNLVTIRRTSNDKAYEEIEGILNDYNIGTVVVGVPI 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GS+ R F + + V +F DER T++ A++ LI NV R+ R + +D
Sbjct: 63 NMDGSDTVMSKRIRKFARKLTPK-FGVEVIFQDERFTSIEAERTLIQSNVRRENRKKYID 121
Query: 138 SIAAALILQEVLDRIS 153
+AA++ILQ +DR++
Sbjct: 122 QLAASIILQTYIDRMN 137
>gi|322514742|ref|ZP_08067768.1| crossover junction endodeoxyribonuclease [Actinobacillus ureae ATCC
25976]
gi|322119337|gb|EFX91453.1| crossover junction endodeoxyribonuclease [Actinobacillus ureae ATCC
25976]
Length = 137
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I + D GT IG A+ A + ++ I ++GLP
Sbjct: 3 RTILAFDFGTYSIGCAVGQDITGTAQGLSSFKAQDGIPNWDQIEKVIQEWLPERLVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P + F + + + + +P DERLTTVSA+ + + + + KV
Sbjct: 63 LNMDGTEQPLTQRAKKFANRL-NGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121
Query: 137 DSIAAALILQEVLD 150
DSI+A LIL+ +
Sbjct: 122 DSISACLILESWFE 135
>gi|261380468|ref|ZP_05985041.1| putative Holliday junction resolvase [Neisseria subflava NJ9703]
gi|284796710|gb|EFC52057.1| putative Holliday junction resolvase [Neisseria subflava NJ9703]
Length = 151
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A D HP + + + + F++G
Sbjct: 5 PKGTVLAFDFGEARIGVAQGDAELGMTHPLATITGNSNDEKFEAIAKLVKEWQPKYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQGFFE 139
>gi|293394486|ref|ZP_06638782.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
gi|291422951|gb|EFE96184.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
Length = 140
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG AI A + T ++ + ++GL
Sbjct: 3 NRTIIAFDFGTKSIGAAIGQEITGTARALAAFKAQDGTPDWQKIEKLLKEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F + + R V DERL+TV A+ L D R
Sbjct: 63 PLNMDGSEQPLTERARKFANRLHGR-FGVKIDLHDERLSTVEARSHLFDRGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 122 VDSASAVVILESWFEQ 137
>gi|294811564|ref|ZP_06770207.1| Putative Holliday junction resolvase [Streptomyces clavuligerus
ATCC 27064]
gi|326440051|ref|ZP_08214785.1| Holliday junction resolvase-like protein [Streptomyces clavuligerus
ATCC 27064]
gi|294324163|gb|EFG05806.1| Putative Holliday junction resolvase [Streptomyces clavuligerus
ATCC 27064]
Length = 157
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 1/151 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ SL+ + ++D+G RIG+A DP A P + + V + + +
Sbjct: 1 MSSLRRGRR-LALDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRIRALVEEYEPI 59
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++GLP ++NG EGP R F + VP DER+TTV+A Q L V
Sbjct: 60 EIVVGLPRSLNGREGPAAKKVRTFAGEVARGVAPVPVRLVDERMTTVTATQGLRASGVKA 119
Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160
KK VD AA +ILQ L+ S G
Sbjct: 120 KKGRSVVDQAAAVVILQNALESERAAGSPPG 150
>gi|269137634|ref|YP_003294334.1| hypothetical protein ETAE_0276 [Edwardsiella tarda EIB202]
gi|267983294|gb|ACY83123.1| conserved hypothetical protein [Edwardsiella tarda EIB202]
gi|304557699|gb|ADM40363.1| Putative Holliday junction resolvase [Edwardsiella tarda FL6-60]
Length = 140
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I + D GT+ IG AI A P ++ + ++GLP
Sbjct: 4 RTILAFDFGTRSIGCAIGQELTGSARPLQSFKANDGAPDWQQIEKVLREWQPDLVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE P R F + + R V DERL+TV A+ L R +V
Sbjct: 64 LNMDGSEQPLTQMARKFANRLHGR-FGVQIALQDERLSTVEARAHLFAGGGYRALEKGRV 122
Query: 137 DSIAAALILQEVLDRISF 154
D+ +AALIL+ + ++
Sbjct: 123 DAASAALILESWFEHQTY 140
>gi|332186801|ref|ZP_08388543.1| uncharacterized family protein [Sphingomonas sp. S17]
gi|332013134|gb|EGI55197.1| uncharacterized family protein [Sphingomonas sp. S17]
Length = 154
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 5/154 (3%)
Query: 1 MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
MS++ + +L + +D+GTK IG A+ D G FA P + R K T+
Sbjct: 1 MSLITTDRSAFRDALPSGGRLIGLDVGTKTIGTALCDAGWSFASPATLVRRTKFTKDKEA 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
L++ I + + +IGLPLN++GSE PR STRAF N D P + WDER +TV+
Sbjct: 61 LIAMIAQQGVKGLVIGLPLNLDGSESPRSQSTRAFARNCADLG---PILLWDERWSTVAV 117
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
++ +I+ ++SR KR +++D++AAA ILQ +D +
Sbjct: 118 ERTMIEQDMSRAKRAERIDNLAAAHILQAAIDAL 151
>gi|157148498|ref|YP_001455817.1| Holliday junction resolvase-like protein [Citrobacter koseri ATCC
BAA-895]
gi|167012710|sp|A8APG8|RUVX_CITK8 RecName: Full=Putative Holliday junction resolvase
gi|157085703|gb|ABV15381.1| hypothetical protein CKO_04324 [Citrobacter koseri ATCC BAA-895]
Length = 138
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+AI A P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRITGTARALPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+T+ A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFA-NRIHGRFGVLVTLHDERLSTIEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|294628345|ref|ZP_06706905.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292831678|gb|EFF90027.1| conserved hypothetical protein [Streptomyces sp. e14]
Length = 154
Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 62/146 (42%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V L + ++G
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVEEYEPIEVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP RAF + VP DER+TTV+A Q L V KK
Sbjct: 62 LPRSLKGGEGPAAVKVRAFAGELAKGVAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ+ L+ G
Sbjct: 122 VIDQAAAVIILQQALESERVSGEPPG 147
>gi|238918247|ref|YP_002931761.1| hypothetical protein NT01EI_0284 [Edwardsiella ictaluri 93-146]
gi|259495703|sp|C5BCS0|RUVX_EDWI9 RecName: Full=Putative Holliday junction resolvase
gi|238867815|gb|ACR67526.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 140
Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I + D GT+ IG AI A P ++ + ++GLP
Sbjct: 4 RTILAFDFGTRSIGCAIGQELTGSARPLQSFKANDGVPDWQQIEKVLREWQPDLVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE P R F + + R V DERL+TV A+ L R +V
Sbjct: 64 LNMDGSEQPLTQQARKFANRLHGR-FGVQIALQDERLSTVEARAHLFAGGGYRALEKGRV 122
Query: 137 DSIAAALILQEVLDR 151
D+ +AALIL+ +
Sbjct: 123 DAASAALILESWFEN 137
>gi|197284239|ref|YP_002150111.1| holliday junction resolvase [Proteus mirabilis HI4320]
gi|226731639|sp|B4EUS0|RUVX_PROMH RecName: Full=Putative Holliday junction resolvase
gi|194681726|emb|CAR40879.1| putative holliday junction resolvase [Proteus mirabilis HI4320]
Length = 139
Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + D GTK IG AI A P K ++ I ++GL
Sbjct: 3 NRTVMGFDFGTKSIGAAIGQEVTGTARPLASFKAKDGIPDWSQIEKIIKEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E + F + + R V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQLVTTQAKKFANRLHGR-FGVQIALHDERLSTVEARAHLFEQGGYRSLDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ +R
Sbjct: 122 VDATSAVIILESWFER 137
>gi|307132696|ref|YP_003884712.1| putative Holliday junction resolvase [Dickeya dadantii 3937]
gi|306530225|gb|ADN00156.1| predicted Holliday junction resolvase [Dickeya dadantii 3937]
Length = 143
Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GT+ IG+AI A P L + ++ + A I+GL
Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGVPDWQKVEKLLNEWQPALVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + R V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQPLTARARKFSQRLHGR-FGVKVDLHDERLSTVEARADLFERGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDAASAVIILESWFEQ 137
>gi|251793467|ref|YP_003008196.1| Holliday junction resolvase-like protein [Aggregatibacter
aphrophilus NJ8700]
gi|247534863|gb|ACS98109.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700]
Length = 139
Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG A+ A P + + I A ++GLPL
Sbjct: 4 TVLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIGKTIKEWQPARIVVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E + F + + R +P DERLTT A+ + R KVD
Sbjct: 64 NMDGTEQELTLRAKKFANRLHGR-FNLPVELQDERLTTTEARSEIFSRGGYRALNKSKVD 122
Query: 138 SIAAALILQEVLDRIS 153
I+A LIL+ ++ S
Sbjct: 123 GISACLILESWFEQYS 138
>gi|323341498|ref|ZP_08081739.1| crossover junction endodeoxyribonuclease [Lactobacillus ruminis
ATCC 25644]
gi|323091109|gb|EFZ33740.1| crossover junction endodeoxyribonuclease [Lactobacillus ruminis
ATCC 25644]
Length = 148
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFII 73
+ +D+G++ +G+A+SD A + + + + ++ F++
Sbjct: 1 MARLMGLDVGSRTVGIAVSDELGWTAQGVEIIKINEEEAIFGIERVKELVEKYDVCGFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
GLP NMN + GPR +++A+ +I+ +P F DERLTTV A+++L++ + SRKKR
Sbjct: 61 GLPKNMNNTLGPRAEASKAYGELLIE-TFGLPIDFQDERLTTVEAERMLVEQADASRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA+LILQ LD
Sbjct: 120 KKVIDKLAASLILQNYLD 137
>gi|59801001|ref|YP_207713.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae FA
1090]
gi|293398863|ref|ZP_06643028.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
gi|62900896|sp|Q5F936|RUVX_NEIG1 RecName: Full=Putative Holliday junction resolvase
gi|59717896|gb|AAW89301.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|291610277|gb|EFF39387.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
Length = 151
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + + + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHADGTEHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVCAESLLSEAQVLGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL L+
Sbjct: 124 VLDQVAAQAILHGFLE 139
>gi|225076223|ref|ZP_03719422.1| hypothetical protein NEIFLAOT_01260 [Neisseria flavescens
NRL30031/H210]
gi|224952347|gb|EEG33556.1| hypothetical protein NEIFLAOT_01260 [Neisseria flavescens
NRL30031/H210]
Length = 151
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A D HP + + + + F++G
Sbjct: 5 PKGTVLAFDFGEARIGVAQGDAELGMTHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQGFFE 139
>gi|15677203|ref|NP_274356.1| Holliday junction resolvase-like protein [Neisseria meningitidis
MC58]
gi|121635046|ref|YP_975291.1| Holliday junction resolvase-like protein [Neisseria meningitidis
FAM18]
gi|254805133|ref|YP_003083354.1| putative Hollyday junction resolvase [Neisseria meningitidis
alpha14]
gi|304387351|ref|ZP_07369543.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
ATCC 13091]
gi|32130068|sp|Q9JZ16|RUVX_NEIMB RecName: Full=Putative Holliday junction resolvase
gi|167012740|sp|A1KUG2|RUVX_NEIMF RecName: Full=Putative Holliday junction resolvase
gi|7226581|gb|AAF41712.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|120866752|emb|CAM10505.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
gi|254668675|emb|CBA06382.1| putative Hollyday junction resolvase [Neisseria meningitidis
alpha14]
gi|254669936|emb|CBA04529.1| putative Hollyday junction resolvase [Neisseria meningitidis
alpha153]
gi|254673037|emb|CBA07628.1| putative Hollyday junction resolvase [Neisseria meningitidis
alpha275]
gi|304338602|gb|EFM04720.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
ATCC 13091]
gi|308389455|gb|ADO31775.1| Holliday junction resolvase-like protein [Neisseria meningitidis
alpha710]
gi|316984140|gb|EFV63118.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325128470|gb|EGC51351.1| hypothetical protein NMXN1568_0820 [Neisseria meningitidis N1568]
gi|325130425|gb|EGC53189.1| hypothetical protein NMBOX9930304_0816 [Neisseria meningitidis
OX99.30304]
gi|325132467|gb|EGC55160.1| hypothetical protein NMBM6190_0869 [Neisseria meningitidis M6190]
gi|325134425|gb|EGC57070.1| hypothetical protein NMBM13399_0866 [Neisseria meningitidis M13399]
gi|325136160|gb|EGC58768.1| hypothetical protein NMBM0579_0893 [Neisseria meningitidis M0579]
gi|325138241|gb|EGC60810.1| hypothetical protein NMBES14902_0966 [Neisseria meningitidis
ES14902]
gi|325140441|gb|EGC62962.1| hypothetical protein NMBCU385_0832 [Neisseria meningitidis CU385]
gi|325198484|gb|ADY93940.1| conserved hypothetical protein [Neisseria meningitidis G2136]
gi|325200040|gb|ADY95495.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325201953|gb|ADY97407.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
gi|325204333|gb|ADY99786.1| conserved hypothetical protein [Neisseria meningitidis M01-240355]
Length = 151
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G++ H +R F + + + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTKHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 124 VLDQVAAQAILHGFFE 139
>gi|270290966|ref|ZP_06197189.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|304385235|ref|ZP_07367580.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici
DSM 20284]
gi|270280362|gb|EFA26197.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|304328442|gb|EFL95663.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici
DSM 20284]
Length = 146
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGL 75
+ +D+G++ +G+A+SD A + + + ++ +A F+IGL
Sbjct: 2 RLMGMDVGSRTVGIAVSDQLGWTAQGVEIIPINEDEGEFGISRVKELVSQYEVAGFVIGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN +EGPRV + R + ++ +P F DERLTTV A+++LI+ + SR KR +
Sbjct: 62 PKNMNNTEGPRVEAARNYG-KLLTETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKK 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA+LIL+ L+
Sbjct: 121 VIDKLAASLILENYLN 136
>gi|172036395|ref|YP_001802896.1| Holliday junction resolvase-like protein [Cyanothece sp. ATCC
51142]
gi|254767512|sp|B1WX86|RUVX_CYAA5 RecName: Full=Putative Holliday junction resolvase
gi|171697849|gb|ACB50830.1| putative holliday junction resolvase, YqgF family [Cyanothece sp.
ATCC 51142]
Length = 143
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KRIG+A D A + R+ Q +L + + + +IGLP +M
Sbjct: 7 LGLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDVQQLEALVKEREVQLLVIGLPYSM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+ G + + F + + +P + DERLT+V A+ L + VD +
Sbjct: 67 DGTIGFQAKKVQKFAKRLSTA-LELPIEYIDERLTSVEAETHLKSQKKYSRYNKGLVDRL 125
Query: 140 AAALILQEVLDRISF 154
AA +ILQ+ LD+
Sbjct: 126 AATIILQQWLDQRRA 140
>gi|296133403|ref|YP_003640650.1| Holliday junction resolvase YqgF [Thermincola sp. JR]
gi|296031981|gb|ADG82749.1| Holliday junction resolvase YqgF [Thermincola potens JR]
Length = 133
Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 77/136 (56%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D+GTKRIG+A+SDP R A + K + EL I ++ ++GLP
Sbjct: 2 RVLGLDVGTKRIGVAVSDPLRLTAQGLTVI---KKGEELTELPRIIEQMEVSEIVVGLPK 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GS GP+ + + + +P +DERLTTV+A++IL++ ++SR KR Q VD
Sbjct: 59 NMDGSLGPKAQEILELTEKLRE-TLQLPVHTYDERLTTVAAERILLEADLSRAKRRQVVD 117
Query: 138 SIAAALILQEVLDRIS 153
AA LILQ LD
Sbjct: 118 KTAAVLILQGYLDSTR 133
>gi|294643795|ref|ZP_06721593.1| RNAse YqgF [Bacteroides ovatus SD CC 2a]
gi|294808455|ref|ZP_06767208.1| RNAse YqgF [Bacteroides xylanisolvens SD CC 1b]
gi|292640884|gb|EFF59104.1| RNAse YqgF [Bacteroides ovatus SD CC 2a]
gi|294444383|gb|EFG13097.1| RNAse YqgF [Bacteroides xylanisolvens SD CC 1b]
Length = 141
Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ P I +ID G KR G+A+SD + A+ + ++ + ++ E + I
Sbjct: 1 MYPMSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYMAKEPVERII 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLP MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 58 IGLPKQMNNEVSENMKNIEPFVRSLNKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDR 117
Query: 133 IQK--VDSIAAALILQEVLDRISF 154
K VD I+A +ILQ L+ F
Sbjct: 118 QNKALVDEISATIILQTYLESKRF 141
>gi|239932416|ref|ZP_04689369.1| hypothetical protein SghaA1_29605 [Streptomyces ghanaensis ATCC
14672]
gi|291440782|ref|ZP_06580172.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291343677|gb|EFE70633.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 154
Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 63/146 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DPG A P + + V L I ++G
Sbjct: 2 RQGRRLAIDVGDARIGVASCDPGGILATPVETVPGRDVPAAHRRLKQLIEEYEPIEVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F + + VP DER+TTV+A Q L V KK
Sbjct: 62 LPRSLKGGEGPAAAKVRGFARELARMIMPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ+ L+ G
Sbjct: 122 VIDQAAAVIILQQALESERVSGEPPG 147
>gi|212709356|ref|ZP_03317484.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM
30120]
gi|212688268|gb|EEB47796.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM
30120]
Length = 139
Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GTK IG+A+ A L ++ + I+GLP
Sbjct: 4 RTLLAFDFGTKSIGVAVGQEITGTARALTSLKASDGRPDWSQIEKLLKEWQPQLVIVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E R F N I + V DERL+TV A+ L + R KV
Sbjct: 64 LNMDGTEQLVTSQARNFA-NRIHGRFGVQVQLHDERLSTVEAKAGLFEQGGYRALSKGKV 122
Query: 137 DSIAAALILQEVLDR 151
DS +A +IL+ ++
Sbjct: 123 DSASAVVILESWFEQ 137
>gi|160931527|ref|ZP_02078922.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753]
gi|156869398|gb|EDO62770.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753]
Length = 139
Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I IDLG R G+A+ D A P + + +++ +GLP N
Sbjct: 3 ILGIDLGKARTGVAVCDRAEMLASPLCVIQEHNRERLIEKIVKLSNERRAEQIALGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSEG + R F ++ K +P F DER TTV+A L +V KKR VDS
Sbjct: 63 MDGSEGESAQNAREFGA-LLQEKTGLPVAFVDERGTTVTAHGYLNQTDVRGKKRKAVVDS 121
Query: 139 IAAALILQEVLDRIS 153
+AA +ILQ LD
Sbjct: 122 VAAVIILQNYLDYRR 136
>gi|239787333|emb|CAX83809.1| Resolvase family protein, holliday junction-type, YqgF-like
[uncultured bacterium]
Length = 161
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ Q + +ID G + +G+A+SD + P + K L + I
Sbjct: 7 AATKGQRLLAIDYGDRFLGVAVSDIMWHISTPLFPIDSKSCN-AFQALGALIDQHACGGI 65
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++G P+NMNGSEGP R F + +P +DERL+TV+A++ +++ ++SRKK
Sbjct: 66 VVGYPINMNGSEGPACERVREFCQKIKKFFPSIPIGLFDERLSTVAAERNMVEADMSRKK 125
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
R QKVDS+AA+ +LQ LD +
Sbjct: 126 RKQKVDSLAASYVLQGTLDYLR 147
>gi|194098916|ref|YP_002001981.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
NCCP11945]
gi|239999198|ref|ZP_04719122.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
35/02]
gi|240013895|ref|ZP_04720808.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
DGI18]
gi|240016336|ref|ZP_04722876.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
FA6140]
gi|240080456|ref|ZP_04724999.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
FA19]
gi|240113174|ref|ZP_04727664.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
MS11]
gi|240115933|ref|ZP_04729995.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
PID18]
gi|240118230|ref|ZP_04732292.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
PID1]
gi|240121464|ref|ZP_04734426.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
PID24-1]
gi|240123779|ref|ZP_04736735.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
PID332]
gi|240125968|ref|ZP_04738854.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
SK-92-679]
gi|240128482|ref|ZP_04741143.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
SK-93-1035]
gi|254493967|ref|ZP_05107138.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|260440253|ref|ZP_05794069.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
DGI2]
gi|268595026|ref|ZP_06129193.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268596594|ref|ZP_06130761.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268599255|ref|ZP_06133422.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268601602|ref|ZP_06135769.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268603941|ref|ZP_06138108.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682404|ref|ZP_06149266.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268684562|ref|ZP_06151424.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268686872|ref|ZP_06153734.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291043546|ref|ZP_06569262.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|193934206|gb|ACF30030.1| Putative Holliday junction resolvase [Neisseria gonorrhoeae
NCCP11945]
gi|226513007|gb|EEH62352.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268548415|gb|EEZ43833.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268550382|gb|EEZ45401.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268583386|gb|EEZ48062.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268585733|gb|EEZ50409.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268588072|gb|EEZ52748.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622688|gb|EEZ55088.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268624846|gb|EEZ57246.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268627156|gb|EEZ59556.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291012009|gb|EFE03998.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|317164485|gb|ADV08026.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 151
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + + + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHADGTEHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVLGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL L+
Sbjct: 124 VLDQVAAQAILHGFLE 139
>gi|50122846|ref|YP_052013.1| Holliday junction resolvase-like protein [Pectobacterium
atrosepticum SCRI1043]
gi|62900970|sp|Q6D075|RUVX_ERWCT RecName: Full=Putative Holliday junction resolvase
gi|49613372|emb|CAG76823.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 139
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GTK IG+AI A ++ ++ ++ ++GL
Sbjct: 3 NRTLLAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + R V DERL+TV A+ L + +
Sbjct: 63 PLNMDGTEQPLTARARKFANRLHGR-FGVAIELHDERLSTVEARADLFERGGFKALDKGS 121
Query: 136 VDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 122 VDAASAVIILESWFE 136
>gi|254414995|ref|ZP_05028758.1| conserved hypothetical protein TIGR00250 [Microcoleus
chthonoplastes PCC 7420]
gi|196178142|gb|EDX73143.1| conserved hypothetical protein TIGR00250 [Microcoleus
chthonoplastes PCC 7420]
Length = 136
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G+KRIG+A D A + R Q + + ++ ++GLP +M
Sbjct: 1 MGLDVGSKRIGVAGCDGTGLIATGLTTIKRTSFEQDVSQFRELVEQRDVQVLVVGLPYSM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+ G + + + + + +P + DERLT+ A+Q+L +S + +D
Sbjct: 61 NGTLGFQARQVQKYARRL-SAALQLPVEYVDERLTSFEAEQLLHAEKLSPSRHKALIDRK 119
Query: 140 AAALILQEVLD 150
AAA+ILQ+ LD
Sbjct: 120 AAAIILQQWLD 130
>gi|83945529|ref|ZP_00957876.1| hypothetical protein OA2633_01404 [Oceanicaulis alexandrii
HTCC2633]
gi|83851105|gb|EAP88963.1| hypothetical protein OA2633_01404 [Oceanicaulis alexandrii
HTCC2633]
Length = 162
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
L +L P P+ +ID GTK +G+A+S+ R P + R+K TQ A LL+
Sbjct: 4 LDPALLPQGPLMAIDPGTKTLGVAVSNTDRTLVTPLTTIQREKFTQDAQALLNLYDERAC 63
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
I+GLPL+M+G +G R S+R+FV N++ + +P + DERL+T +A + LI+ V
Sbjct: 64 VGLIVGLPLHMHGGDGRRAQSSRSFVTNLLRLR-DLPVAYQDERLSTFAATESLIEAGVK 122
Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153
R VD+ AAA+IL+ + RI+
Sbjct: 123 PSHRKDFVDAQAAAVILESAIGRIN 147
>gi|315635115|ref|ZP_07890393.1| crossover junction endodeoxyribonuclease [Aggregatibacter segnis
ATCC 33393]
gi|315476077|gb|EFU66831.1| crossover junction endodeoxyribonuclease [Aggregatibacter segnis
ATCC 33393]
Length = 139
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG A+ A P + + I ++GLPL
Sbjct: 4 TVIAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWEAIEKCIQDWQPERLVVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E P + F + + R +P DERLTT A+ + R KVD
Sbjct: 64 NMDGTEQPLTLRAKKFANRLHGR-FNLPVELQDERLTTTEARSEIFGRGGYRALNKSKVD 122
Query: 138 SIAAALILQEVLDR 151
I+A LIL+ ++
Sbjct: 123 GISACLILESWFEQ 136
>gi|293372829|ref|ZP_06619207.1| RNAse YqgF [Bacteroides ovatus SD CMC 3f]
gi|292632204|gb|EFF50804.1| RNAse YqgF [Bacteroides ovatus SD CMC 3f]
Length = 141
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ P I +ID G KR G+A+SD + A+ + ++ + +I E + I
Sbjct: 1 MYPMSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYIAKEPVERII 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLP MN + + FV ++ +P + DER T+V A + +++ + +K R
Sbjct: 58 IGLPKQMNNEVSENMKNIEPFVRSLKKCYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDR 117
Query: 133 IQK--VDSIAAALILQEVLDRISF 154
K VD I+A +ILQ L+ F
Sbjct: 118 QNKALVDEISATIILQTYLESKRF 141
>gi|239947537|ref|ZP_04699290.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921813|gb|EER21837.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 156
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN P+ +ID G+K++G+A+S+ R A P + LL
Sbjct: 1 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQ 119
+ I + +IGLP++M+G+ + + F + + + +P DERLTT +A
Sbjct: 61 NIIEKYKVCGVVIGLPIDMSGAVTEQTNIVMKFAEELAESINLPIPVYLQDERLTTKAAN 120
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L V RK R D++AA++IL+ VLD I L
Sbjct: 121 NFLKSFGVKRKDRNNNDDAVAASMILETVLDSIKKL 156
>gi|307256259|ref|ZP_07538043.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306865223|gb|EFM97122.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 137
Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I + D GT IG A+ A P + ++ I ++GLP
Sbjct: 3 RTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE P + F + + + + + DERLTTVSA+ + + + + KV
Sbjct: 63 LNMDGSEQPLTQRAKKFANRL-NGRFNLLVELQDERLTTVSAKAEIFERGGYKALKKDKV 121
Query: 137 DSIAAALILQEVLD 150
DSI+A LIL+ +
Sbjct: 122 DSISACLILESWFE 135
>gi|56461319|ref|YP_156600.1| Holliday junction resolvase-like protein [Idiomarina loihiensis
L2TR]
gi|62900918|sp|Q5QVM3|RUVX_IDILO RecName: Full=Putative Holliday junction resolvase
gi|56180329|gb|AAV83051.1| Predicted endonuclease [Idiomarina loihiensis L2TR]
Length = 144
Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D GTK IG+A+ A P + K+ + ++GL
Sbjct: 1 MSTVIGFDFGTKSIGVAVGQTITATASPLAAITAKEGIPDWQLIEKLFAEWQPEQLVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P + F + + R +P F DERLT+ SA++ L RK +
Sbjct: 61 PLNMDGTEQPLTQKAKKFGNRLHGR-FGLPVAFQDERLTSTSARESLFAEGGFRKLKKGA 119
Query: 136 VDSIAAALILQEVLD 150
VDS AA +I+++ ++
Sbjct: 120 VDSQAALIIVEDFMN 134
>gi|116333831|ref|YP_795358.1| Holliday junction resolvase-like protein [Lactobacillus brevis ATCC
367]
gi|122269482|sp|Q03R45|RUVX_LACBA RecName: Full=Putative Holliday junction resolvase
gi|116099178|gb|ABJ64327.1| RNase H-like ribonuclease [Lactobacillus brevis ATCC 367]
Length = 145
Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 82/145 (56%), Gaps = 4/145 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G++ +G+A+SD A + + + + I + ++ F++GL
Sbjct: 2 KLMGLDVGSRTVGVAVSDALGWTAQGVEIIRINEDEEQFGLDRVGELIASHDVQGFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN S GPR +++ + +M+ + +P F DERLTTV A+++L++ + SR+KR Q
Sbjct: 62 PKNMNNSLGPRAEASKRYG-DMLTARFNLPVDFEDERLTTVEAERMLVEQADTSRRKRKQ 120
Query: 135 KVDSIAAALILQEVLDRISFLESSK 159
+D +AA LILQ LDR L K
Sbjct: 121 VIDKLAAGLILQNYLDRHGKLTREK 145
>gi|218768356|ref|YP_002342868.1| Holliday junction resolvase-like protein [Neisseria meningitidis
Z2491]
gi|32130067|sp|Q9JU11|RUVX_NEIMA RecName: Full=Putative Holliday junction resolvase
gi|121052364|emb|CAM08696.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
gi|319410602|emb|CBY90971.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
Length = 151
Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G++ H +R F + + + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTKHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 124 VLDQVAAQAILHGFFE 139
>gi|94967587|ref|YP_589635.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis
Ellin345]
gi|124107438|sp|Q1IU89|RUVX_ACIBL RecName: Full=Putative Holliday junction resolvase
gi|94549637|gb|ABF39561.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis
Ellin345]
Length = 153
Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ++D GT+RIGLA+SDP A L+RK L S I I ++GL
Sbjct: 8 HGRILALDFGTRRIGLAVSDPLGITAQGLQTLLRKNKRTDLAALRSVIEQNEIREIVVGL 67
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL ++G++ R F ++++ +P WDER T+V A ++L + +S KKR +
Sbjct: 68 PLRLSGADSSSTEKAREFAA-WLEKEFALPVHMWDERFTSVEANRVLRESEMSIKKRGEA 126
Query: 136 VDSIAAALILQEVLDR 151
VD ++A LILQ L+R
Sbjct: 127 VDRLSAVLILQAFLER 142
>gi|261363738|ref|ZP_05976621.1| putative Holliday junction resolvase [Neisseria mucosa ATCC 25996]
gi|288568309|gb|EFC89869.1| putative Holliday junction resolvase [Neisseria mucosa ATCC 25996]
Length = 158
Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A D +HP + + + I ++G
Sbjct: 5 PVGTVLAFDFGEARIGVAQGDAELGLSHPLATVTGNSNDEKFNAIAKLIREWQPKHLVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPTHADGTEHELTRLSRKFGRRLHGR-FNLPIYWVDERMSSLYAESLLAEAQVFGRKQKA 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ D
Sbjct: 124 VLDQVAAQAILQGFFD 139
>gi|24374858|ref|NP_718901.1| Holliday junction resolvase-like protein [Shewanella oneidensis
MR-1]
gi|32130031|sp|Q8EBZ8|RUVX_SHEON RecName: Full=Putative Holliday junction resolvase
gi|24349553|gb|AAN56345.1|AE015772_5 conserved hypothetical protein TIGR00250 [Shewanella oneidensis
MR-1]
Length = 141
Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GTK IG+A+ A P + E+ I ++GLP
Sbjct: 4 KTVLGFDFGTKSIGVAVGQQITASATPLLSIKAVDGIPNWEEIAKLIQEWQPDLVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E H R F + + + K V DERLTT A+ L ++ + +V
Sbjct: 64 LNMDGTEQEMTHRARKFANRL-NAKFGVKIFTQDERLTTTDAKARLFELGGYKALTKGQV 122
Query: 137 DSIAAALILQEVLDR 151
D+++A LI++ +
Sbjct: 123 DAVSAVLIIESYFEN 137
>gi|291166998|gb|EFE29044.1| Holliday junction resolvase [Filifactor alocis ATCC 35896]
Length = 140
Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ++D+G +RIG+A+SD P + R K + +++ I +I + GL
Sbjct: 3 EKRILALDVGDRRIGMAMSDLLGWTPQPLYTIHRTKDEEDLGKIVEVIKQYDIGTIVCGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NM+G+ G + T FV + + VF DERL+T SA+Q++ V +K +
Sbjct: 63 PKNMDGTVGFQGEKTMQFVEQLQQLIPPEIKVVFQDERLSTKSAKQVMHTSGVKKKNKKN 122
Query: 135 KVDSIAAALILQEVL 149
+D+IAA IL+ L
Sbjct: 123 MIDTIAAVFILETYL 137
>gi|15604198|ref|NP_220713.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. Madrid E]
gi|6226362|sp|Q9ZDJ8|RUVX_RICPR RecName: Full=Putative Holliday junction resolvase
gi|3860890|emb|CAA14790.1| unknown [Rickettsia prowazekii]
gi|292571936|gb|ADE29851.1| Putative endonuclease involved in recombination [Rickettsia
prowazekii Rp22]
Length = 156
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN+P+ +ID G+K+IG+A+SD A P + LL
Sbjct: 1 MIIKNLQEFYRLLIPNKPLIAIDYGSKKIGVALSDQELSIAMPFNTITAVNKKVVITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I + +IGLP++M+G + + F + + + +P DERLTT SA
Sbjct: 61 NIIKKYKVCGIVIGLPIDMSGGVTQQTNIVMKFAEKL-KQSLGLPIYLQDERLTTKSANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L + RK R D++AA++IL+ VL+ I
Sbjct: 120 FLKSFGIKRKDRNHNDDAVAASMILEIVLNAIKRF 154
>gi|329938947|ref|ZP_08288321.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus
M045]
gi|329301832|gb|EGG45725.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus
M045]
Length = 154
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 63/146 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V L + ++G
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F + VP DER+TTV+A Q L V KK
Sbjct: 62 LPRSLKGGEGPAAVKVRGFAQELAGLIAPVPVRLLDERMTTVTASQGLRASGVKSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ+ L+ SS G
Sbjct: 122 VIDQAAAVIILQQALESERVSGSSPG 147
>gi|116493009|ref|YP_804744.1| Holliday junction resolvase-like protein [Pediococcus pentosaceus
ATCC 25745]
gi|122265527|sp|Q03ES0|RUVX_PEDPA RecName: Full=Putative Holliday junction resolvase
gi|116103159|gb|ABJ68302.1| RNase H-like ribonuclease [Pediococcus pentosaceus ATCC 25745]
Length = 146
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITTENIAAFIIGL 75
+ +D+G++ +G+++SD A + + + + + ++ F++GL
Sbjct: 2 RLMGMDVGSRTVGISVSDQLGWTAQGVEIVPINEDEEIFGIERVKELVKEYDVVGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN +EGPRV + R + +++ +P F DERLTTV A+++LI+ + SR KR +
Sbjct: 62 PKNMNNTEGPRVEAARNYG-KLLEETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKK 120
Query: 135 KVDSIAAALILQEVLD 150
+D +AA+LIL+ L+
Sbjct: 121 VIDKLAASLILENYLN 136
>gi|161870210|ref|YP_001599380.1| Holliday junction resolvase-like protein [Neisseria meningitidis
053442]
gi|189046101|sp|A9LZR5|RUVX_NEIM0 RecName: Full=Putative Holliday junction resolvase
gi|161595763|gb|ABX73423.1| Putative Holliday junction resolvase [Neisseria meningitidis
053442]
Length = 151
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGETRIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G++ H +R F + + + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTKHEMTHLSRKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 124 VLDQVAAQAILHGFFE 139
>gi|261823143|ref|YP_003261249.1| Holliday junction resolvase-like protein [Pectobacterium wasabiae
WPP163]
gi|261607156|gb|ACX89642.1| Holliday junction resolvase YqgF [Pectobacterium wasabiae WPP163]
Length = 139
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GTK IG+AI A ++ ++ ++ ++GL
Sbjct: 3 NRTLLAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + R V DERL+TV A+ L + +
Sbjct: 63 PLNMDGTEQPLTARARKFANRLHGR-FGVAIELHDERLSTVEARADLFERGGFKALDKGS 121
Query: 136 VDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 122 VDAASAVIILESWFE 136
>gi|293390910|ref|ZP_06635244.1| Holliday junction resolvase-like protein [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951444|gb|EFE01563.1| Holliday junction resolvase-like protein [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 139
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG A+ A P + + I A ++GLPL
Sbjct: 4 TVLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIEKCIQEWQPARIVVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E P + F + R +P DERLTT A+ + R KVD
Sbjct: 64 NMDGTEQPLTLRAKKFAKRLHGR-FNIPVDLQDERLTTTEARSEIFSRGGYRALNKSKVD 122
Query: 138 SIAAALILQEVLDR 151
I+A LIL+ +
Sbjct: 123 GISACLILESWFEN 136
>gi|21220001|ref|NP_625780.1| Holliday junction resolvase-like protein [Streptomyces coelicolor
A3(2)]
gi|32130071|sp|Q9KXQ0|RUVX_STRCO RecName: Full=Putative Holliday junction resolvase
gi|8249959|emb|CAB93380.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 167
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + ++G
Sbjct: 15 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVAEYEPIEVVVG 74
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F + VP DER+TTV+A Q L V KK
Sbjct: 75 LPRSLKGGEGPAAAKVRRFTQELAKGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 134
Query: 135 KVDSIAAALILQEVL--DRISFLESSKG 160
+D AA +ILQ+ L +R+S +G
Sbjct: 135 VIDQAAAVIILQQALESERVSGRPPGEG 162
>gi|256545147|ref|ZP_05472513.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170]
gi|256399188|gb|EEU12799.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170]
Length = 139
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +DLG K IG+A+SDP A + RKK + +L+ I + + IIGL
Sbjct: 1 MSRIMGLDLGDKTIGVALSDPFFITAQAYITIKRKKASLDIEKLIEIINEKEVNLIIIGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ +FV +++ + + + DER+TT+ + Q+L+DMNV+ K R +
Sbjct: 61 PKNMNNTLGPQAMKVISFV-DLLKKSTDIEIKYQDERMTTIQSDQVLMDMNVNLKDRKKY 119
Query: 136 VDSIAAALILQEVLDRIS 153
VD IAA+ ILQ LD +
Sbjct: 120 VDKIAASFILQTYLDGRN 137
>gi|254881557|ref|ZP_05254267.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|254834350|gb|EET14659.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
Length = 139
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + A+ + Q +L ++ E + I+G
Sbjct: 1 MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTH---QLLDFILKYVEKEPVERIIVGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN E + + FV+ + + +P F DER T+V A Q ++D + +K R K
Sbjct: 58 PKQMNNQESENMRNIVPFVNQLRKKLPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISFL 155
VD I+A +ILQ L+ ++
Sbjct: 118 ALVDEISATIILQSYLESKKYI 139
>gi|218132863|ref|ZP_03461667.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC
43243]
gi|217991736|gb|EEC57740.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC
43243]
Length = 139
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D GTK +G+A++DP P + R K+ T + I ++ ++G
Sbjct: 2 RILGLDYGTKTVGVAVTDPLGMTVQPLETITRDSDSKIRPTLRRIEEIIKELDVEQIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+EG R +R F +M++R+ + V DERLTTV A++IL V+RK +
Sbjct: 62 LPLNMDGTEGERAACSREFG-DMLERRTGLQVVMTDERLTTVEAEEILETCKVARKDYKK 120
Query: 135 KVDSIAAALILQEV 148
VDS+AA LIL++
Sbjct: 121 YVDSVAAVLILEDY 134
>gi|237808011|ref|YP_002892451.1| Holliday junction resolvase-like protein [Tolumonas auensis DSM
9187]
gi|237500272|gb|ACQ92865.1| Holliday junction resolvase YqgF [Tolumonas auensis DSM 9187]
Length = 146
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + D GTK IG+A A P L + ++ + I+GL
Sbjct: 6 NRSLMGFDFGTKSIGIATGQEITGSASPLTSLKANEGIPDWAQIEKLLKEWQPDLLIVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + R F DERLTT A+ L + R +
Sbjct: 66 PLNMDGTEQEMTQRARKFGQRLHGR-FGFQVEFKDERLTTTDAKARLFEHGGYRALGKSR 124
Query: 136 VDSIAAALILQEVLDR 151
VD+++A LIL+ ++
Sbjct: 125 VDAVSAQLILESWMES 140
>gi|317476773|ref|ZP_07936016.1| hypothetical protein HMPREF1016_03000 [Bacteroides eggerthii
1_2_48FAA]
gi|316906948|gb|EFV28659.1| hypothetical protein HMPREF1016_03000 [Bacteroides eggerthii
1_2_48FAA]
Length = 141
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + + +L ++ E + ++GL
Sbjct: 1 MSRIIAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLAFILDYVAKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + FV ++ + +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNEASENMKRIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138
>gi|332972979|gb|EGK10919.1| crossover junction endodeoxyribonuclease [Kingella kingae ATCC
23330]
Length = 151
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ D G +RIG+A + AHP + + ++ I + ++
Sbjct: 5 PTQGSALAFDFGEQRIGVAQGEASIGIAHPLITITGQSNDDKFAQIAKQIQAWQPSCLVV 64
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +++G+E R F + R +P + DERL++V A+++L V +K+
Sbjct: 65 GLPSHLDGTEHEITQLARKFGRRLHGR-FALPVYWVDERLSSVYAEELLRQAQVFGRKQK 123
Query: 134 QKVDSIAAALILQEVLDR 151
K+D +AA ILQ D
Sbjct: 124 AKLDQVAAQAILQSFFDS 141
>gi|183596313|ref|ZP_02958341.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827]
gi|188023917|gb|EDU61957.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827]
Length = 139
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG+A+ A L ++ + I+GL
Sbjct: 3 SRTLLAFDFGTKSIGVAVGQEITGTARSLASLKANDGRPDWQQIEKLLKEWQPQLVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F N I + V DERL+TV+A+ L + R K
Sbjct: 63 PLNMDGTEQLVTSQARNFA-NRIHGRFGVKVELHDERLSTVAAKAELFERGGYRALSKGK 121
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 122 VDSASAVVILESWFEQ 137
>gi|160889624|ref|ZP_02070627.1| hypothetical protein BACUNI_02050 [Bacteroides uniformis ATCC 8492]
gi|317479181|ref|ZP_07938318.1| hypothetical protein HMPREF1007_01434 [Bacteroides sp. 4_1_36]
gi|156860616|gb|EDO54047.1| hypothetical protein BACUNI_02050 [Bacteroides uniformis ATCC 8492]
gi|316904669|gb|EFV26486.1| hypothetical protein HMPREF1007_01434 [Bacteroides sp. 4_1_36]
Length = 141
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ Q LL ++ E + ++GL
Sbjct: 1 MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLQF---LLDYVAKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + FV ++ + +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNEASENMKNIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138
>gi|329998587|ref|ZP_08303171.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3]
gi|328538606|gb|EGF64706.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3]
Length = 138
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D GTK IG+A A P P L + + + A I+GL
Sbjct: 2 SGTFLGFDFGTKSIGVAGGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V + DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARNFANK-IHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVVILESYFEQ 136
>gi|227115172|ref|ZP_03828828.1| Holliday junction resolvase-like protein [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 139
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG+AI A ++ ++ ++ ++GL
Sbjct: 3 SRTILAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + R + DERL+TV A+ L + +
Sbjct: 63 PLNMDGTEQPLTARARKFANRLHGR-FGIAIELHDERLSTVEARADLFERGGFKALDKGS 121
Query: 136 VDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 122 VDAASAVIILESWFE 136
>gi|325107974|ref|YP_004269042.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305]
gi|324968242|gb|ADY59020.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305]
Length = 155
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + ID GTKR+GLAIS P + A P + R + Q + ++ +
Sbjct: 1 MSSDFPETGTLLGIDFGTKRVGLAISTPDQSIASPLEIIHRSQPAQDSKKICKICNEFRV 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP++M+GSEG + R F + +P ++WDER T+ A L +S
Sbjct: 61 KGLVVGLPVHMSGSEGGKAKEARVFG-DWCGEITQLPVIYWDERFTSALADNHLRQSTMS 119
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
+ KR + +D +AA ++LQ L+
Sbjct: 120 QAKRKKHLDKLAAQVMLQSFLE 141
>gi|46014949|pdb|1NU0|A Chain A, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of
Yqgf From Escherichia Coli, A Hypothetical Protein
gi|46014950|pdb|1NU0|B Chain B, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of
Yqgf From Escherichia Coli, A Hypothetical Protein
Length = 138
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLXAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLN +G+E P R F N I + V DERL+TV A+ L + R K
Sbjct: 62 PLNXDGTEQPLTARARKFA-NRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYXEQ 136
>gi|189466359|ref|ZP_03015144.1| hypothetical protein BACINT_02734 [Bacteroides intestinalis DSM
17393]
gi|189434623|gb|EDV03608.1| hypothetical protein BACINT_02734 [Bacteroides intestinalis DSM
17393]
Length = 140
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + + +L ++ E + ++GL
Sbjct: 1 MSRILAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLAFILDYVGKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + FV + + +P + DER T+V A + + + + +K R K
Sbjct: 58 PKQMNNEASENMKRIEPFVRLLKKKLPEMPVEYVDERFTSVLAHRTMREAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISFL 155
VD I+A +ILQ L+ F+
Sbjct: 118 ALVDEISATIILQSYLENKRFI 139
>gi|297198337|ref|ZP_06915734.1| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083]
gi|297147063|gb|EDY58423.2| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083]
Length = 154
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 63/146 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V L + ++G
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R FV + VP DER+TTV+A Q L V KK
Sbjct: 62 LPRSLKGGEGPAAVKVRGFVQELARGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ+ L+ + G
Sbjct: 122 VIDQAAAVIILQQALESERVSGKAPG 147
>gi|284991580|ref|YP_003410134.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
43160]
gi|284064825|gb|ADB75763.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
43160]
Length = 222
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 64/131 (48%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID+GT R+G+AISDP A P + R + + + + + I+G P ++
Sbjct: 86 LGIDVGTVRVGVAISDPTGTLASPLETVQRARDESDLDRIAALVVEHEVTEVIVGEPRHL 145
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+ G RA+ + R VP DERL+TV+A L + +++ +D
Sbjct: 146 SGASGASAKEARAYSRALAGRIGSVPVHLVDERLSTVTAASSLRANGLDSRRQRPVIDQA 205
Query: 140 AAALILQEVLD 150
AA +ILQ LD
Sbjct: 206 AAVVILQAYLD 216
>gi|115350792|ref|YP_772631.1| Holliday junction resolvase-like protein [Burkholderia ambifaria
AMMD]
gi|172059815|ref|YP_001807467.1| Holliday junction resolvase-like protein [Burkholderia ambifaria
MC40-6]
gi|122323878|sp|Q0BHS6|RUVX_BURCM RecName: Full=Putative Holliday junction resolvase
gi|226725493|sp|B1YU28|RUVX_BURA4 RecName: Full=Putative Holliday junction resolvase
gi|115280780|gb|ABI86297.1| Holliday junction resolvase YqgF [Burkholderia ambifaria AMMD]
gi|171992332|gb|ACB63251.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MC40-6]
Length = 149
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 1/150 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + + + D G KRIG+AI + R A + + +
Sbjct: 1 MSGASARDATLLGFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLP++ +G+ + F + + + + +P + DER ++V A+ L + NV
Sbjct: 61 DALVVGLPMHPDGTPHEMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ R + +D+ AA +ILQ+ LD++S E
Sbjct: 120 GRARAEMLDAEAARVILQQYLDQLSDHEHH 149
>gi|218130012|ref|ZP_03458816.1| hypothetical protein BACEGG_01595 [Bacteroides eggerthii DSM 20697]
gi|217987815|gb|EEC54141.1| hypothetical protein BACEGG_01595 [Bacteroides eggerthii DSM 20697]
Length = 141
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + + +L ++ E + ++GL
Sbjct: 1 MSRIIAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLAFILDYVAKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + FV ++ + +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNEASENMKRIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138
>gi|146312992|ref|YP_001178066.1| Holliday junction resolvase-like protein [Enterobacter sp. 638]
gi|167012721|sp|A4WE85|RUVX_ENT38 RecName: Full=Putative Holliday junction resolvase
gi|145319868|gb|ABP62015.1| Holliday junction resolvase YqgF [Enterobacter sp. 638]
Length = 138
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+AI A P + + T + + A I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRITGTARPLTAIKAQDGTPDWTLIERLLKEWQPEAVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARKFANK-IHGRFGAVVKLHDERLSTVEARAGLFEHGGFRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESFFEQ 136
>gi|255066197|ref|ZP_05318052.1| putative Holliday junction resolvase [Neisseria sicca ATCC 29256]
gi|255049407|gb|EET44871.1| putative Holliday junction resolvase [Neisseria sicca ATCC 29256]
Length = 155
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A D +HP + + + I ++G
Sbjct: 5 PAGTVLAFDFGETRIGVAQGDAELGLSHPLATVTGNSNDEKFNAIAKLIREWQPKHLVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPTHADGTEHELTRLSRKFGRRLHGR-FNLPIYWVDERMSSLYAESLLAEAQVFGRKQKA 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ D
Sbjct: 124 VLDQVAAQAILQGFFD 139
>gi|77461533|ref|YP_351040.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
Pf0-1]
gi|126352256|sp|Q3K5A5|RUVX_PSEPF RecName: Full=Putative Holliday junction resolvase
gi|77385536|gb|ABA77049.1| putative holliday junction resolvase [Pseudomonas fluorescens
Pf0-1]
Length = 145
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 2/141 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 6 ILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + + + +PF DERLTT A+ + L+ R VD
Sbjct: 66 MDGTPSEMCARAEKFARRL-NGRFNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVD 124
Query: 138 SIAAALILQEVLDRISFLESS 158
+IAAAL+LQ LD + L S
Sbjct: 125 AIAAALLLQGWLDENTALFES 145
>gi|150006542|ref|YP_001301286.1| Holliday junction resolvase-like protein [Bacteroides vulgatus ATCC
8482]
gi|294778839|ref|ZP_06744256.1| RNAse YqgF [Bacteroides vulgatus PC510]
gi|319642941|ref|ZP_07997577.1| Holliday junction resolvase [Bacteroides sp. 3_1_40A]
gi|167012694|sp|A6L7K0|RUVX_BACV8 RecName: Full=Putative Holliday junction resolvase
gi|149934966|gb|ABR41664.1| putative endonuclease [Bacteroides vulgatus ATCC 8482]
gi|294447292|gb|EFG15875.1| RNAse YqgF [Bacteroides vulgatus PC510]
gi|317385489|gb|EFV66432.1| Holliday junction resolvase [Bacteroides sp. 3_1_40A]
Length = 139
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + A+ + Q +L ++ E + I+G
Sbjct: 1 MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTH---QLLDFILKYVEKEPVERIIVGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN E + + FV+ + + +P F DER T+V A Q ++D + +K R K
Sbjct: 58 PKQMNNQESENMRNIVPFVNQLRKKIPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISFL 155
VD I+A +ILQ L+ ++
Sbjct: 118 ALVDEISATIILQSYLESKKYI 139
>gi|302037044|ref|YP_003797366.1| putative holliday junction resolvase [Candidatus Nitrospira
defluvii]
gi|300605108|emb|CBK41441.1| predicted Holliday junction resolvase (modular protein) [Candidatus
Nitrospira defluvii]
Length = 203
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
Q I +ID G+KRIG A+SD A P R+ + + + ++G
Sbjct: 2 KGQRILAIDHGSKRIGFALSDELGWTAQPLETFYRRNPDADIRHIQDLVREHEVGQVLVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+PL ++G GP F+ +++ + VP + WDER+TT +A+ +LI +V R+KR
Sbjct: 62 MPLRLDGEIGPAAKVVAEFIQ-LLEPALSVPVITWDERMTTCAAEDLLIAADVGRRKRKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
VD IAAA++LQ L +
Sbjct: 121 IVDRIAAAILLQSYLASL 138
>gi|332142458|ref|YP_004428196.1| Holliday junction resolvase-like protein [Alteromonas macleodii
str. 'Deep ecotype']
gi|327552480|gb|AEA99198.1| Holliday junction resolvase-like protein [Alteromonas macleodii
str. 'Deep ecotype']
Length = 143
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG+A+ A P P L + + ++GL
Sbjct: 6 SRTVLAFDFGTKSIGVAVGQEITGTASPLPALKARDGIPDWNVIEKLYEEWQPHVVVVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + R V DERLTT A+ +L ++ +K K
Sbjct: 66 PLNMDGTEQEMTQRARKFANRLHGR-FRVAVETCDERLTTTDAKSMLFELGGYKKLTKDK 124
Query: 136 VDSIAAALILQEV 148
VDS++A +I
Sbjct: 125 VDSVSACVIFASW 137
>gi|304413317|ref|ZP_07394790.1| Holliday junction resolvase-like protein [Candidatus Regiella
insecticola LSR1]
gi|304284160|gb|EFL92553.1| Holliday junction resolvase-like protein [Candidatus Regiella
insecticola LSR1]
Length = 140
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG+AI A L + L++ + ++GL
Sbjct: 3 NRTIMAFDFGTKSIGVAIGQTITGTATALSALKARDGIPDWLQVEKLLGEWQPELVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + R V DERL+TV+A+ L + R
Sbjct: 63 PLNMDGTEQPLTSRARKFANRLHSR-FNVKIALHDERLSTVAARAHLFNHGGYRALDKGN 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +AA+IL ++
Sbjct: 122 VDAASAAVILCSWFEQ 137
>gi|317493541|ref|ZP_07951962.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918484|gb|EFV39822.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 140
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG AI A P + + ++ + ++GL
Sbjct: 3 NRTIIAFDFGTKSIGAAIGQEVTGTARPLASFKANEGSPDWSKIEKMLKEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F N I + V DERL+TV A+ L R
Sbjct: 63 PLNMDGTEQPVTAQARKFA-NRIHGRFGVQVALHDERLSTVEARAHLFAGGGYRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDAASAVIILESWFEQ 137
>gi|227326191|ref|ZP_03830215.1| Holliday junction resolvase-like protein [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 139
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG+AI A ++ ++ ++ ++GL
Sbjct: 3 SRTILAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + R V DERL+TV A+ L + +
Sbjct: 63 PLNMDGTEQPLTARARKFANRLHGR-FGVAIELHDERLSTVEARADLFERGGFKALDKGS 121
Query: 136 VDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 122 VDAASAVIILESWFE 136
>gi|188582759|ref|YP_001926204.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001]
gi|179346257|gb|ACB81669.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001]
Length = 165
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ I ++ + + +DLGTK IG+A+SD GR+ A P + R K T A ++
Sbjct: 1 MNRDEIAAFAEASRGAPRLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDAGRIV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +IGLPLNM+GSEGPR S+R+F N+ +F+DERL+T + +
Sbjct: 61 ALCAAHGVGGLVIGLPLNMDGSEGPRAQSSRSFARNLRPLLPLP-VLFFDERLSTAAVTR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
L++ + SR +R + VD +AAA ILQ LD + + S
Sbjct: 120 TLLEADASRARRGEVVDKLAAAYILQSCLDVMGGMFSGA 158
>gi|330994858|ref|ZP_08318780.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1]
gi|329758119|gb|EGG74641.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1]
Length = 246
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + I L L+ +Q + +D G K IG+A+SD G A P L R K++ A ++
Sbjct: 84 MPLFNISHLRTLLRRDQRLLGLDPGRKTIGVALSDVGLMLASPHTGLKRAKLSVNAAQIS 143
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ +++ ++GLPL+++GS GP + R + N+ + +P WDERL++ + +
Sbjct: 144 TIARAQDVGGLVVGLPLSLDGSFGPAAQAARDWTLNLSE-LTGLPAAMWDERLSSSAVNR 202
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
LI + +++R++R VD +AAA ILQ LD
Sbjct: 203 FLIAEADMTRQRRGAVVDQMAAAYILQAALD 233
>gi|154482585|ref|ZP_02025033.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC
27560]
gi|149736610|gb|EDM52496.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC
27560]
Length = 142
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+A++DP A + R K+ +T + + NI ++G
Sbjct: 2 RILGLDFGSKTVGVAVTDPLGYTAQGVEIIRRDSPNKLRKTLARIEQLVEQYNIEKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P+ ++G+EG RV T+ F M++R+ + VF DERLTTV A +I+ + + ++ R +
Sbjct: 62 YPVMLSGTEGERVKKTKEFGA-MLERRTGLEIVFQDERLTTVEAYEIMDEAGIKKQDRYK 120
Query: 135 KVDSIAAALILQEVLDRI 152
VD IAA +IL++ ++RI
Sbjct: 121 YVDQIAATIILEDYINRI 138
>gi|67458927|ref|YP_246551.1| Holliday junction resolvase-like protein [Rickettsia felis
URRWXCal2]
gi|75536635|sp|Q4UM37|RUVX_RICFE RecName: Full=Putative Holliday junction resolvase
gi|67004460|gb|AAY61386.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2]
Length = 154
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ L PN P+ +ID G+K++G+A+S+ R A P ++ LL
Sbjct: 1 MIIKNLQEFYPLLIPNAPLIAIDYGSKKLGIALSNQERNIAMPLNTIIEINKKIVITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
S I + +IGLP++M+G+ + + F + + +P DERLTT +A
Sbjct: 61 SIIEKYKVCGVVIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L V RK R D++AA++IL+ VLD + L
Sbjct: 120 FLKSFGVKRKDRNNNDDAVAASMILETVLDSMKKL 154
>gi|294634382|ref|ZP_06712919.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC
23685]
gi|291092190|gb|EFE24751.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC
23685]
Length = 140
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GT+ IG AI A P + ++ + ++GL
Sbjct: 3 SRTLLAFDFGTRSIGCAIGQELTGSARPLQSFKANEGIPDWQQIEKVLREWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F + + R V DERL+TV A+ L R +
Sbjct: 63 PLNMDGSEQPLTQLARKFANRLHGR-FGVQIALHDERLSTVEARAHLFADGGYRALEKGR 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +AALIL+ D
Sbjct: 122 VDAASAALILESWFDN 137
>gi|223935593|ref|ZP_03627509.1| Holliday junction resolvase YqgF [bacterium Ellin514]
gi|223895601|gb|EEF62046.1| Holliday junction resolvase YqgF [bacterium Ellin514]
Length = 138
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 55/136 (40%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +ID GTKRIGLAISD A P F++ + + L I + + ++G+P
Sbjct: 3 RILAIDHGTKRIGLAISDELGVIAQPLEFVLAEPFANFLVRLKQLIQEKQVEMLLVGMPR 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GS GP + FV + D V +P WDERLT+ A + LI +V R KR +KVD
Sbjct: 63 NMDGSYGPAALKVQEFVTVLKD-SVAIPIKTWDERLTSAQANRFLIQADVRRDKRKEKVD 121
Query: 138 SIAAALILQEVLDRIS 153
AAA++LQ LD +
Sbjct: 122 KTAAAILLQSYLDSFA 137
>gi|119512614|ref|ZP_01631690.1| Holliday junction resolvase-like protein [Nodularia spumigena
CCY9414]
gi|119462747|gb|EAW43708.1| Holliday junction resolvase-like protein [Nodularia spumigena
CCY9414]
Length = 156
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G KR+G+A D A + R + ++ + + + +IGLP +M
Sbjct: 14 LGLDFGRKRMGVAGCDGTGLIATGLTTIERTSFERDVQQIRNIVDERQVQILVIGLPYSM 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+ G + + F + + + +P + DERLT+ A+Q+LI N S + +D
Sbjct: 74 DGTLGFQARQVQKFAKRL-GKALNLPVEYIDERLTSFQAEQLLIAENRSPSRHKGLIDRK 132
Query: 140 AAALILQEVLDRISF 154
AA++ILQ+ LD
Sbjct: 133 AASIILQQWLDSRRA 147
>gi|157964411|ref|YP_001499235.1| Holliday junction resolvase-like protein [Rickettsia massiliae
MTU5]
gi|157844187|gb|ABV84688.1| Putative endonuclease involved in recombination [Rickettsia
massiliae MTU5]
Length = 165
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN P+ +ID G+K++G+A+S+ R A P + LL
Sbjct: 12 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINTKIVITSLL 71
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I + IIGLP+NM+G+ + + F + + +P DERLTT +A
Sbjct: 72 NIIEKYKVCGVIIGLPINMSGAVTEQTNIVMQFAEELAK-SINLPIYLQDERLTTKAANN 130
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L V RK R D++AA++IL+ VLD I +
Sbjct: 131 FLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 165
>gi|212691279|ref|ZP_03299407.1| hypothetical protein BACDOR_00770 [Bacteroides dorei DSM 17855]
gi|237712292|ref|ZP_04542773.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237726431|ref|ZP_04556912.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|265752000|ref|ZP_06087793.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212666511|gb|EEB27083.1| hypothetical protein BACDOR_00770 [Bacteroides dorei DSM 17855]
gi|229434957|gb|EEO45034.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229453613|gb|EEO59334.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263236792|gb|EEZ22262.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 139
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + A+ + Q +L ++ E + I+G
Sbjct: 1 MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTH---QLLDFILKYVEKEPVERIIVGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN E + + FV+ + + +P F DER T+V A Q ++D + +K R K
Sbjct: 58 PKQMNNQESENMRNIVPFVNQLRKKLPDIPIEFVDERFTSVLAHQAMLDGGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISFL 155
VD I+A +ILQ L+ ++
Sbjct: 118 ALVDEISATIILQSYLESKKYI 139
>gi|145298211|ref|YP_001141052.1| Holliday junction resolvase-like protein [Aeromonas salmonicida
subsp. salmonicida A449]
gi|167012688|sp|A4SK82|RUVX_AERS4 RecName: Full=Putative Holliday junction resolvase
gi|142850983|gb|ABO89304.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 140
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I D GTK IG+AI A P + ++ + ++GL
Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGVPNWDDIEKLLKEWQPDLLVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + R F DERLTT A+ L + +
Sbjct: 63 PLNMDGTEQEITVRARKFGNRLHGR-FGKQVEFKDERLTTTDARARLFERGGYKALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD ++A LIL+ ++
Sbjct: 122 VDGVSAQLILEAWMEE 137
>gi|307326783|ref|ZP_07605975.1| Holliday junction resolvase YqgF [Streptomyces violaceusniger Tu
4113]
gi|306887546|gb|EFN18540.1| Holliday junction resolvase YqgF [Streptomyces violaceusniger Tu
4113]
Length = 154
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 1/148 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++ + I +ID+G RIG+A DP A P + + + L + + +
Sbjct: 1 MRRGRRI-AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAALVEEYEPLEVV 59
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP +++G EGP R F + R VP DER+TTV+A Q L V+ KK
Sbjct: 60 VGLPRSLSGREGPAAAKVRTFARELARRVAPVPVRLVDERMTTVTASQGLRASGVTSKKG 119
Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
VD AA +ILQ L+ + G
Sbjct: 120 RSVVDQAAAVVILQSALETERVSGRAPG 147
>gi|224826991|ref|ZP_03700089.1| Holliday junction resolvase YqgF [Lutiella nitroferrum 2002]
gi|224600824|gb|EEG07009.1| Holliday junction resolvase YqgF [Lutiella nitroferrum 2002]
Length = 142
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + D G +RIG+A+ + AHP + + Q + I A ++G
Sbjct: 2 PDGTTLAFDFGERRIGVAMGETLLGIAHPLTTIDTEITEQRFAAIGKLIEEWRPAQLVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E +R F + + R +P DER T++ A+ +L + V +K+
Sbjct: 62 LPVHADGTEHDLTRLSRRFANRLKGR-FGLPVWLVDERHTSLIAESLLNEAGVRGRKQKP 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA ILQ ++
Sbjct: 121 ALDQVAAQAILQTWFEQ 137
>gi|329666848|gb|AEB92796.1| hypothetical protein LJP_0462 [Lactobacillus johnsonii DPC 6026]
Length = 143
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISDP A + K + ++ + ++ F++GL
Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
P NM+GS G V ++ + + ++ +P + DERLTTV A +IL+ + V R +R
Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKEK-FDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA LILQ L+
Sbjct: 121 KVIDQMAAVLILQNYLE 137
>gi|308050639|ref|YP_003914205.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799]
gi|307632829|gb|ADN77131.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799]
Length = 138
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I + D GTK IG+A+ A P + + E+ + + ++GL
Sbjct: 1 MSTIMAFDFGTKSIGVAVGQTVTGTASPLLGIKARDGIPNWDEIAALLKEWQPDKLVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G++ + R F + + R + + DERLTTV A+ L + R + +
Sbjct: 61 PLNMDGTDQHVTRAARKFANRLFGR-FGIETLTQDERLTTVDARARLFEDGGYRALKKDQ 119
Query: 136 VDSIAAALILQEVLDRI 152
VD++AAALIL+ + +
Sbjct: 120 VDALAAALILESYFETL 136
>gi|325144525|gb|EGC66824.1| hypothetical protein NMBM01240013_0937 [Neisseria meningitidis
M01-240013]
gi|325205893|gb|ADZ01346.1| conserved hypothetical protein [Neisseria meningitidis M04-240196]
gi|325208296|gb|ADZ03748.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
Length = 151
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G++ H + F + + + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTKHEMTHLSHKFGRRL-NGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 124 VLDQVAAQAILHGFFE 139
>gi|237722140|ref|ZP_04552621.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|260170793|ref|ZP_05757205.1| Holliday junction resolvase-like protein [Bacteroides sp. D2]
gi|299149163|ref|ZP_07042224.1| putative Holliday junction resolvase [Bacteroides sp. 3_1_23]
gi|315919127|ref|ZP_07915367.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|229447950|gb|EEO53741.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|298512830|gb|EFI36718.1| putative Holliday junction resolvase [Bacteroides sp. 3_1_23]
gi|313693002|gb|EFS29837.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 138
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ + +I E + IIGL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYIAKEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + FV ++ R +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138
>gi|113460159|ref|YP_718215.1| Holliday junction resolvase-like protein [Haemophilus somnus 129PT]
gi|170718190|ref|YP_001785215.1| Holliday junction resolvase-like protein [Haemophilus somnus 2336]
gi|123327115|sp|Q0I1B3|RUVX_HAES1 RecName: Full=Putative Holliday junction resolvase
gi|189046099|sp|B0UWW2|RUVX_HAES2 RecName: Full=Putative Holliday junction resolvase
gi|112822202|gb|ABI24291.1| possible endonuclease involved in recombination [Haemophilus somnus
129PT]
gi|168826319|gb|ACA31690.1| Holliday junction resolvase YqgF [Haemophilus somnus 2336]
Length = 141
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG A+ A P + L++ + ++GLPL
Sbjct: 4 TVLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPDWLKIEKCLKDWQPNIVVVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSE H R F + + + + V DERLTT A+ + R + +KVD
Sbjct: 64 NMDGSEQDLTHLARKFANRL-NGRFGVKVELQDERLTTKQARDEIFQRGGYRALKKEKVD 122
Query: 138 SIAAALILQEVLDR 151
SI+A LIL+ +
Sbjct: 123 SISACLILESWFEN 136
>gi|295425853|ref|ZP_06818533.1| crossover junction endodeoxyribonuclease [Lactobacillus
amylolyticus DSM 11664]
gi|295064456|gb|EFG55384.1| crossover junction endodeoxyribonuclease [Lactobacillus
amylolyticus DSM 11664]
Length = 142
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISD A + K L + + A F++GL
Sbjct: 2 RLIGLDIGSKTVGVAISDELGITAQKLETIPIDESKFNFGMRPLKKIVREYDPAGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
P NM+G+ G V ++A+ + +K +P + DERLTTV ++++L+ + V RKKR
Sbjct: 62 PKNMDGTSGHSVDRSKAYGERL-KKKFNLPVYYDDERLTTVESRRVLVEEAGVHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137
>gi|261867346|ref|YP_003255268.1| Holliday junction resolvase-like protein [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412678|gb|ACX82049.1| Holliday junction resolvase-like protein [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 139
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG A+ A P + + I A ++GLPL
Sbjct: 4 TVLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIEKCIQEWQPARIVVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E P + F + R VP DERLTT A+ + KVD
Sbjct: 64 NMDGTEQPLTLRAKKFAKRLHGR-FNVPVDLQDERLTTTEARSEIFSRGGYHALNKSKVD 122
Query: 138 SIAAALILQEVLDR 151
I+A LIL+ +
Sbjct: 123 GISACLILESWFEN 136
>gi|88859063|ref|ZP_01133704.1| Holliday junction resolvase-like protein [Pseudoalteromonas
tunicata D2]
gi|88819289|gb|EAR29103.1| Holliday junction resolvase-like protein [Pseudoalteromonas
tunicata D2]
Length = 149
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D GT+ IG+A+ A P + + E+ + + ++GL
Sbjct: 11 ERTVLGFDFGTRSIGIAVGQEITGSASPLKAINARDGIPNWDEIAAIVNEWQPDLLVVGL 70
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+ + F + + + +P DERLTT A+ L +K
Sbjct: 71 PLNMDGTNQEVTFQAKKFANRLHN-NYGLPVETQDERLTTADAKSQLFAQGGFKKLTKGN 129
Query: 136 VDSIAAALILQEVLDR 151
VDS++A LIL+ +
Sbjct: 130 VDSMSALLILESYFEN 145
>gi|315037653|ref|YP_004031221.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
GRL 1112]
gi|325956138|ref|YP_004286748.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
30SC]
gi|312275786|gb|ADQ58426.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
GRL 1112]
gi|325332703|gb|ADZ06611.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
30SC]
gi|327182946|gb|AEA31393.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
GRL 1118]
Length = 142
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A+SD A + + L + + F++GL
Sbjct: 2 RLLGLDVGSKTVGVAVSDELGITAQKLETIQIDETKYNFGMRPLKKLVRQYDPEGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133
P NM+G+ G V ++A+ + + K +P + DERLTT+ +Q++L++ + RKKR
Sbjct: 62 PKNMDGTSGSSVARSKAYGKRL-EEKFGLPVYYSDERLTTIESQRVLVEDAGIHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137
>gi|117620774|ref|YP_857631.1| hypothetical protein AHA_3131 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|167012687|sp|A0KMY0|RUVX_AERHH RecName: Full=Putative Holliday junction resolvase
gi|117562181|gb|ABK39129.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 140
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I D GTK IG+AI A P + ++ + ++GL
Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + R F DERLTT A+ L + R
Sbjct: 63 PLNMDGTEQEITVRARKFGNRLHGR-FGKQVEFKDERLTTTDARARLFERGGYRALEKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD ++A LIL+ ++
Sbjct: 122 VDGVSAQLILEAWMEE 137
>gi|270293966|ref|ZP_06200168.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270275433|gb|EFA21293.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 141
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ Q LL ++ E + ++G
Sbjct: 1 MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLQF---LLDYVAKEPVERILVGF 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + FV ++ + +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNEASENMKNIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138
>gi|167763508|ref|ZP_02435635.1| hypothetical protein BACSTE_01882 [Bacteroides stercoris ATCC
43183]
gi|329954513|ref|ZP_08295604.1| RNAse H domain protein, YqgF family [Bacteroides clarus YIT 12056]
gi|167698802|gb|EDS15381.1| hypothetical protein BACSTE_01882 [Bacteroides stercoris ATCC
43183]
gi|328527481|gb|EGF54478.1| RNAse H domain protein, YqgF family [Bacteroides clarus YIT 12056]
Length = 141
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + + ++ ++ E + ++GL
Sbjct: 1 MSRIIAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLAFIMDYVAKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + FV ++ R +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNEASENMKRIEPFVRSLQKRLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLENRRF 138
>gi|225024365|ref|ZP_03713557.1| hypothetical protein EIKCOROL_01240 [Eikenella corrodens ATCC
23834]
gi|224942862|gb|EEG24071.1| hypothetical protein EIKCOROL_01240 [Eikenella corrodens ATCC
23834]
Length = 148
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + D G RIG+A D AHP + + + + + + F++G
Sbjct: 5 PHGTTLAFDFGETRIGVAQGDAEVGIAHPLATISGEGNDKKFAAIAALVAEWRPVQFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +GSE R F H + + + +P + DERLT++ A ++L + +K+
Sbjct: 65 LPFSTDGSEHEMTRLARKFGHRL-NGRFGLPVYWADERLTSLYATELLNQTGLHGRKQKP 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQGFFE 139
>gi|170698781|ref|ZP_02889845.1| Holliday junction resolvase YqgF [Burkholderia ambifaria IOP40-10]
gi|170136338|gb|EDT04602.1| Holliday junction resolvase YqgF [Burkholderia ambifaria IOP40-10]
Length = 149
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + + + + D G KRIG+AI + R A + + +
Sbjct: 1 MSGASARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLP++ +G+ + F + + + + +P + DER ++V A+ L + NV
Sbjct: 61 DALVVGLPMHPDGTPHEMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ R + +D+ AA +ILQ+ LD++S E
Sbjct: 120 GRARAEMLDAEAARVILQQYLDQLSDHEHH 149
>gi|319935504|ref|ZP_08009939.1| Holliday junction resolvase [Coprobacillus sp. 29_1]
gi|319809535|gb|EFW05952.1| Holliday junction resolvase [Coprobacillus sp. 29_1]
Length = 140
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFII 73
+ I +DLG++ G+AISDP A K A + + + NI ++
Sbjct: 1 MEKILGLDLGSRTCGIAISDPLGIIAQGVETYRFKDNHYKSAAYHIKTIVQENNIHTIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +MNG G R + F + ++ + V + DERLTTV + LI +VSRKKR
Sbjct: 61 GLPKHMNGDLGERAQISIDFKERL-EKMMDVEVILVDERLTTVMMENQLIFADVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD
Sbjct: 120 EVIDKLAAVQILQGYLDSQR 139
>gi|298492528|ref|YP_003722705.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708]
gi|298234446|gb|ADI65582.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708]
Length = 158
Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G+KRIGLA D A + RK + ++ + + ++GLP M
Sbjct: 14 LGVDVGSKRIGLAGCDGTGLIATGLTTIDRKSFEEDVEQIQQIVNARRVQVLVVGLPYAM 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + F H + + + +P + DERLT+ A+Q+LI N S + +D
Sbjct: 74 DGSLGFQARHVQKFTHRLA-QALKLPVEYVDERLTSYQAEQLLIAENRSPSRHKGLIDRK 132
Query: 140 AAALILQEVLD 150
AAALILQ+ LD
Sbjct: 133 AAALILQQWLD 143
>gi|224542878|ref|ZP_03683417.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM
15897]
gi|224524208|gb|EEF93313.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM
15897]
Length = 140
Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73
+ I +DLG++ G+AISD AH + A + + + NI ++
Sbjct: 1 MEKILGLDLGSRTCGVAISDTLGMLAHGVETYHFSENAYKKCAYHIKNIVEENNIHTIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +MNG G R + F + ++ + V + DERLTTV A LI +VSRKKR
Sbjct: 61 GLPKHMNGDLGERAQISIDFKERL-EKMMDVEVILEDERLTTVIATNNLIFGDVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
Q VD +AA ILQ LD+I
Sbjct: 120 QVVDKMAAVEILQGYLDKIR 139
>gi|160883801|ref|ZP_02064804.1| hypothetical protein BACOVA_01773 [Bacteroides ovatus ATCC 8483]
gi|156110886|gb|EDO12631.1| hypothetical protein BACOVA_01773 [Bacteroides ovatus ATCC 8483]
Length = 138
Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ + +I E + IIGL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYIAKEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + FV ++ R +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNELSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138
>gi|330830729|ref|YP_004393681.1| Holliday junction resolvase-like protein [Aeromonas veronii B565]
gi|328805865|gb|AEB51064.1| Holliday junction resolvase-like protein [Aeromonas veronii B565]
Length = 140
Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I D GTK IG+AI A P L E+ + ++GL
Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTAQPLRALKANDGIPNWDEIEKLLKEWQPDLLVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G++ R F + + R P F DERLTT A+ L + R
Sbjct: 63 PLNMDGTDQEITVRARKFGNRLHGR-FGKPVEFKDERLTTTDARARLFERGGYRALEKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD ++A LI++ ++
Sbjct: 122 VDGVSAQLIVEAWMEE 137
>gi|42518572|ref|NP_964502.1| hypothetical protein LJ0476 [Lactobacillus johnsonii NCC 533]
gi|62900996|sp|Q74KV1|RUVX_LACJO RecName: Full=Putative Holliday junction resolvase
gi|41582857|gb|AAS08468.1| hypothetical protein LJ_0476 [Lactobacillus johnsonii NCC 533]
Length = 143
Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISDP A + K + ++ + ++ F++GL
Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGLRQIRRIVRKYDVEGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
P NM+GS G V ++ + + ++ +P + DERLTTV A +IL+ + V R +R
Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKEK-FDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA LILQ L+
Sbjct: 121 KVIDQMAAVLILQNYLE 137
>gi|28378868|ref|NP_785760.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
WCFS1]
gi|254557074|ref|YP_003063491.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
JDM1]
gi|300768026|ref|ZP_07077932.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308181068|ref|YP_003925196.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|32130018|sp|Q88V13|RUVX_LACPL RecName: Full=Putative Holliday junction resolvase
gi|28271705|emb|CAD64611.1| endonuclease involved in recombination (putative) [Lactobacillus
plantarum WCFS1]
gi|254046001|gb|ACT62794.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
JDM1]
gi|300494375|gb|EFK29537.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308046559|gb|ADN99102.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 144
Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G++ +G+AISD A + + + + + + F++GL
Sbjct: 2 KLMGLDVGSRTVGVAISDAFGWTAQGVEIIRINEDAEEFGIDRVAELVEELDAGGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN + GPR + + + ++ + ++P F DERLTTV A+++L++ N SRKKR +
Sbjct: 62 PKNMNNTLGPRAEAAQHYGE-LLTARFHLPVDFEDERLTTVEAERMLVEEANTSRKKRKK 120
Query: 135 KVDSIAAALILQEVLDRISFL 155
+D +AA+LILQ LDR L
Sbjct: 121 VIDKLAASLILQNYLDRHGKL 141
>gi|116629094|ref|YP_814266.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323]
gi|238853837|ref|ZP_04644202.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
gi|282852131|ref|ZP_06261488.1| RNAse YqgF [Lactobacillus gasseri 224-1]
gi|311111120|ref|ZP_07712517.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22]
gi|122273908|sp|Q045P4|RUVX_LACGA RecName: Full=Putative Holliday junction resolvase
gi|116094676|gb|ABJ59828.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323]
gi|238833532|gb|EEQ25804.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
gi|282556695|gb|EFB62300.1| RNAse YqgF [Lactobacillus gasseri 224-1]
gi|311066274|gb|EFQ46614.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22]
Length = 143
Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISDP A + K + ++ + ++ F++GL
Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKLVRKYDVEGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
P NM+GS G V ++ + + ++ +P + DERLTTV A +IL+ + V R +R
Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKEK-FDLPVHYMDERLTTVQADRILVQEAGVHDRVERK 120
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA LILQ L+
Sbjct: 121 KVIDQMAAVLILQSYLE 137
>gi|298384714|ref|ZP_06994274.1| Holliday junction resolvase [Bacteroides sp. 1_1_14]
gi|298262993|gb|EFI05857.1| Holliday junction resolvase [Bacteroides sp. 1_1_14]
Length = 138
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ + ++ E + IIGL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTLQLIANGLTTVPTHELLNF---IGEYVAKEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + FV ++ R +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNEASENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138
>gi|153808040|ref|ZP_01960708.1| hypothetical protein BACCAC_02326 [Bacteroides caccae ATCC 43185]
gi|149129649|gb|EDM20863.1| hypothetical protein BACCAC_02326 [Bacteroides caccae ATCC 43185]
Length = 138
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ + +I E + I+GL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGDYIAKEPVERIIVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + FV ++ R +P + DER T+V A + + + + +K R K
Sbjct: 58 PRQMNNEVSENMKNIEPFVRSLKKRFPDIPVEYVDERFTSVLAHRTMQEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138
>gi|268318983|ref|YP_003292639.1| putative Holliday junction resolvase [Lactobacillus johnsonii
FI9785]
gi|262397358|emb|CAX66372.1| putative Holliday junction resolvase [Lactobacillus johnsonii
FI9785]
Length = 143
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISDP A + K + ++ + ++ F++GL
Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
P NM+GS G V ++ + + ++ +P + DERLTTV A +IL+ + V R +R
Sbjct: 62 PKNMDGSSGHSVERSKQYGGRLKEK-FDLPVYYVDERLTTVQADRILVEEAGVHDRVERK 120
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA LILQ L+
Sbjct: 121 KVIDQMAAVLILQNYLE 137
>gi|319638570|ref|ZP_07993332.1| Holliday junction resolvase [Neisseria mucosa C102]
gi|317400319|gb|EFV80978.1| Holliday junction resolvase [Neisseria mucosa C102]
Length = 151
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A + +HP + + + + F++G
Sbjct: 5 PKGTVLAFDFGEARIGVAQGEAELGMSHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQGFFE 139
>gi|29833393|ref|NP_828027.1| hypothetical protein SAV_6851 [Streptomyces avermitilis MA-4680]
gi|62901021|sp|Q827S3|RUVX_STRAW RecName: Full=Putative Holliday junction resolvase
gi|29610516|dbj|BAC74562.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 156
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 63/146 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + ++G
Sbjct: 4 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVLG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP RAF + VP DER+TTV+A Q L V KK
Sbjct: 64 LPRSLKGGEGPAAVKVRAFAQELARVIAPVPVRLMDERMTTVTASQGLRASGVKSKKGRS 123
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ+ L+ + G
Sbjct: 124 VIDQAAAVIILQQALESERVSGKAPG 149
>gi|300362249|ref|ZP_07058425.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
JV-V03]
gi|300353240|gb|EFJ69112.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
JV-V03]
Length = 143
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISDP A + K + ++ + ++ F++GL
Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
P NM+GS G V ++ + + ++ +P + DERLTTV A +IL+ + V R +R
Sbjct: 62 PKNMDGSSGHSVERSKQYGERLKEK-FDLPVHYMDERLTTVQADRILVQEAGVHDRVERK 120
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA LILQ L+
Sbjct: 121 KVIDQMAAVLILQSYLE 137
>gi|328881149|emb|CCA54388.1| putative Holliday junction resolvase [Streptomyces venezuelae ATCC
10712]
Length = 156
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+++ + I ++D+G RIG+A DP A P + + V L +
Sbjct: 2 TMRRGRRI-AVDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRLRQIVEEYEPIEV 60
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLP +++G EGP RAF M VP DER+TTV+A Q L V KK
Sbjct: 61 VVGLPRSLSGREGPAATKVRAFAGEMAKGIAPVPVRLVDERMTTVTATQGLRASGVKAKK 120
Query: 132 RIQKVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ L+ + G
Sbjct: 121 GRSVIDQAAAVIILQNALEAERVSGNPPG 149
>gi|227888703|ref|ZP_04006508.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
ATCC 33200]
gi|227850730|gb|EEJ60816.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
ATCC 33200]
Length = 143
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISDP A + K + ++ + ++ F++GL
Sbjct: 2 RLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGLRQIRKIVRKYDVEGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
P NM+GS G V ++ + + ++ +P + DERLTTV A +IL+ + V R +R
Sbjct: 62 PKNMDGSSGRSVERSKQYGERLKEK-FDLPVYYMDERLTTVQADRILVEEAGVHDRVERK 120
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA LILQ L+
Sbjct: 121 KVIDQMAAVLILQNYLE 137
>gi|325265855|ref|ZP_08132541.1| crossover junction endodeoxyribonuclease [Kingella denitrificans
ATCC 33394]
gi|324982493|gb|EGC18119.1| crossover junction endodeoxyribonuclease [Kingella denitrificans
ATCC 33394]
Length = 159
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 1/139 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + D G RIG+A + AHP + + ++ I +
Sbjct: 4 IPKQGCCLAFDFGKVRIGVAQGESSLHIAHPICTVSGAGNDEKFAKIAQLIKEWQPEYLV 63
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP +++G+E R F + R P + DERL++V A+++L + V KK+
Sbjct: 64 VGLPTHIDGTEHEMTRLARQFGRRLHGR-FGKPVYWVDERLSSVYAEELLREAAVFGKKQ 122
Query: 133 IQKVDSIAAALILQEVLDR 151
+D +AA IL D
Sbjct: 123 KPVLDQVAAQAILHYFFDN 141
>gi|331002893|ref|ZP_08326406.1| hypothetical protein HMPREF0491_01268 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413186|gb|EGG92560.1| hypothetical protein HMPREF0491_01268 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 143
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFI 72
+ I +D G+K IG+AISD A P + R K+ ++ + + ++I +
Sbjct: 2 KERIMGLDYGSKTIGVAISDALGLTAQPLETIERSGENKLRRSLARIAEIVREKDIKKIV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP+NM+G G R T FV + +V +P V DERLTTV A +IL + V ++ R
Sbjct: 62 VGLPINMDGRSGERAALTLEFVEKL-KLRVDIPIVMQDERLTTVEADEILDESGVKKQDR 120
Query: 133 IQKVDSIAAALILQEVLDRIS 153
Q +D IAA +IL+E +++ +
Sbjct: 121 KQFIDQIAAGIILKEYMEKEN 141
>gi|167586351|ref|ZP_02378739.1| Holliday junction resolvase-like protein [Burkholderia ubonensis
Bu]
Length = 149
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + D G KRIG+AI + R A + + + A ++G
Sbjct: 7 RDATLMAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + + + + +P + DER ++V A+ L + +V + R
Sbjct: 67 LPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAALRERDVRGRARAG 125
Query: 135 KVDSIAAALILQEVLDRISFLESS 158
+D+ AA +ILQ+ LD++S E
Sbjct: 126 MLDAEAARVILQQYLDQLSDHEHH 149
>gi|34580618|ref|ZP_00142098.1| hypothetical protein [Rickettsia sibirica 246]
gi|238651062|ref|YP_002916919.1| Holliday junction resolvase-like protein [Rickettsia peacockii str.
Rustic]
gi|259495713|sp|C4K2S0|RUVX_RICPU RecName: Full=Putative Holliday junction resolvase
gi|28262003|gb|EAA25507.1| unknown [Rickettsia sibirica 246]
gi|238625160|gb|ACR47866.1| Holliday junction resolvase-like protein [Rickettsia peacockii str.
Rustic]
Length = 154
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN P+ +ID G+K++G+A+S+ R A P + LL
Sbjct: 1 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I + IIGLP++M+G+ + + F + + +P DERLTT +A
Sbjct: 61 NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+L V RK R D++AA++IL+ VLD I +
Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154
>gi|167770376|ref|ZP_02442429.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM
17241]
gi|167667383|gb|EDS11513.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM
17241]
Length = 142
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D G R GLA D A P L K ++ + + ++ I+G P+
Sbjct: 2 KILAVDFGDARTGLACCDRTEYLASPIGVLHDKDFGSVLQKVAAAASEYDVQEIIVGHPI 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+EGPR F + V VP WDER TTVSA L N KKR + +D
Sbjct: 62 NMNGTEGPRAQLCADFAGQLAK-LVTVPVRLWDERGTTVSATGFLNATNTRGKKRKEVID 120
Query: 138 SIAAALILQEVLDRIS 153
+AA +IL+ L+
Sbjct: 121 EVAATIILESYLNYRR 136
>gi|152977888|ref|YP_001343517.1| Holliday junction resolvase-like protein [Actinobacillus
succinogenes 130Z]
gi|171472921|sp|A6VKT5|RUVX_ACTSZ RecName: Full=Putative Holliday junction resolvase
gi|150839611|gb|ABR73582.1| Holliday junction resolvase YqgF [Actinobacillus succinogenes 130Z]
Length = 140
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D GTK IG A+ A P + ++ + ++GL
Sbjct: 2 GMTVIAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPDWADIEKCLKEWKPDMVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F H + + + V + DERLTT A+ + + R + K
Sbjct: 62 PLNMDGTEQDLTRRARKFGHRL-NGRFGVKVAWQDERLTTTQARTEIFERGGYRALKKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDSI+A LIL+ +
Sbjct: 121 VDSISACLILESWFEE 136
>gi|302561724|ref|ZP_07314066.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000]
gi|302479342|gb|EFL42435.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000]
Length = 163
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V L + ++G
Sbjct: 11 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGLLVQEYEPIEVVVG 70
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F + VP DER+TTV+A Q L V KK
Sbjct: 71 LPRSLKGGEGPAAAKVRGFARELARGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 130
Query: 135 KVDSIAAALILQEVL--DRISFLESSKG 160
+D AA +ILQ+ L +R+S +G
Sbjct: 131 VIDQAAAVIILQQALESERVSGRPPGEG 158
>gi|323341645|ref|ZP_08081878.1| crossover junction endodeoxyribonuclease [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322464070|gb|EFY09263.1| crossover junction endodeoxyribonuclease [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 144
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGL 75
I +DLG+K G+A+SD +AHP L K + + L S I E + +G
Sbjct: 3 GKIIGLDLGSKTCGVALSDGLGMYAHPVETLYYKVSIDELKEPLDSLIKKERVKVIALGF 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN G R + F + + V DERLT+V A + LID +VSRKKR +
Sbjct: 63 PKMMNNDVGERAQISEEFKKTL-ESWFNCEVVLIDERLTSVVANRQLIDQDVSRKKRKKV 121
Query: 136 VDSIAAALILQEVLDRISFLESS 158
VD +AA ILQ LD+ F+E +
Sbjct: 122 VDQLAAVHILQTYLDKRRFMEGN 144
>gi|229586597|ref|YP_002845098.1| Holliday junction resolvase-like protein [Rickettsia africae ESF-5]
gi|259495712|sp|C3PN45|RUVX_RICAE RecName: Full=Putative Holliday junction resolvase
gi|228021647|gb|ACP53355.1| Putative endonuclease involved in recombination [Rickettsia africae
ESF-5]
Length = 154
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN P+ +ID G+K++G+A+S+ A P + LL
Sbjct: 1 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINKKIVITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I + IIGLP++M+G+ + + F + + +P DERLTT +A
Sbjct: 61 NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+L V RK R D++AA++IL+ VLD I +
Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154
>gi|91794024|ref|YP_563675.1| Holliday junction resolvase-like protein [Shewanella denitrificans
OS217]
gi|123060738|sp|Q12KS4|RUVX_SHEDO RecName: Full=Putative Holliday junction resolvase
gi|91716026|gb|ABE55952.1| Holliday junction resolvase YqgF [Shewanella denitrificans OS217]
Length = 141
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
NQ + D GTK IG+A+ A P L + E+ I ++GL
Sbjct: 4 NQTVLGFDYGTKSIGVAVGQSITASASPLLALKAQDGIPNWDEIEKLIKEWQPDLVVVGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E + F N I + V + DERLTT A+ L ++ + +
Sbjct: 64 PLNMDGTEQDITQRAKKFA-NRISGRFGVKVLTQDERLTTADAKARLFELGGYKALTKGQ 122
Query: 136 VDSIAAALILQEVLDR 151
VD+++A LI++ +
Sbjct: 123 VDAVSAVLIIESYFEN 138
>gi|87120930|ref|ZP_01076822.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121]
gi|86163768|gb|EAQ65041.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121]
Length = 152
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GT RIG+A+ A P + + + + F++GLP
Sbjct: 15 RTLLGFDFGTTRIGIAVGQEITATATPINPIKARDGIPNWDTIAEVVKEWQPDGFVVGLP 74
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E R F + + R P DERL++ A+ +I +R + V
Sbjct: 75 LNMDGTENEMCQRARKFANRLHGR-YNKPSYMMDERLSSYEAKGQVIKEGGNRNFKANSV 133
Query: 137 DSIAAALILQEVL 149
D +AA +IL+
Sbjct: 134 DGLAAQMILESWF 146
>gi|58336756|ref|YP_193341.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
NCFM]
gi|227903317|ref|ZP_04021122.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
ATCC 4796]
gi|62900899|sp|Q5FLW4|RUVX_LACAC RecName: Full=Putative Holliday junction resolvase
gi|58254073|gb|AAV42310.1| hypothetical protein LBA0419 [Lactobacillus acidophilus NCFM]
gi|227868946|gb|EEJ76367.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
ATCC 4796]
Length = 142
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISD A + + L + ++ F++GL
Sbjct: 2 RLLGLDVGSKTVGVAISDELGITAQKLETIQIDETKYNFGMRPLKKLVRQYDVDGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133
P NM+G+ G V ++A+ + + K +P + DERLTT+ ++++LI+ + RKKR
Sbjct: 62 PKNMDGTSGNSVARSKAYGKRL-EEKFNLPVYYSDERLTTIESRRVLIEDAGMHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137
>gi|296115811|ref|ZP_06834437.1| putative Holliday junction resolvase [Gluconacetobacter hansenii
ATCC 23769]
gi|295977788|gb|EFG84540.1| putative Holliday junction resolvase [Gluconacetobacter hansenii
ATCC 23769]
Length = 153
Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 2/151 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + I +L +L+P Q + ID G K IG+A+SD A P + R+K++ A E+
Sbjct: 1 MPLFNIPELRLALRPGQRLMGIDPGQKTIGIALSDVSLMLASPCTTVRRRKLSLVAAEIG 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++ A + GLPL+++GS GP + R ++ N+ + V +P WDERL++ + +
Sbjct: 61 ELARRHDVGALVGGLPLSLDGSFGPAAQAARDWMMNLSQQ-VGLPAAMWDERLSSSAVNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
+LI D++++R++R Q VD +AAA ILQ LD
Sbjct: 120 MLIQDVDMTRQRREQVVDKVAAAYILQAALD 150
>gi|300723963|ref|YP_003713277.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC
19061]
gi|297630494|emb|CBJ91159.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC
19061]
Length = 139
Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ I + D GT+ IG AI A + + + + I+G
Sbjct: 2 KNRTIIAFDFGTRSIGAAIGQEVTGTARALSAFKANEGSPNWQLIEKLLKEWQPDLVIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E P R F + + R V DERLTTV A+ L D +
Sbjct: 62 LPLNMDGTEQPVTAQARKFANRLHGR-FGVQVALHDERLTTVEARSHLFDHGGYKALNKG 120
Query: 135 KVDSIAAALILQEVLDR 151
KVD+ +A +IL+ +R
Sbjct: 121 KVDAASAVIILESWFER 137
>gi|329961282|ref|ZP_08299448.1| RNAse H domain protein, YqgF family [Bacteroides fluxus YIT 12057]
gi|328531947|gb|EGF58764.1| RNAse H domain protein, YqgF family [Bacteroides fluxus YIT 12057]
Length = 141
Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + Q +L ++ E + ++GL
Sbjct: 1 MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTH---QLLTFILDYVAKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + FV ++ + +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLQKKLPDMPIEYVDERFTSVLAHRTMLEAGLKKKARQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLENRRF 138
>gi|148657331|ref|YP_001277536.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1]
gi|226731646|sp|A5UY83|RUVX_ROSS1 RecName: Full=Putative Holliday junction resolvase
gi|148569441|gb|ABQ91586.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1]
Length = 141
Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 81/137 (59%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G +RIG+A+SDP R A P + + +L+ I + A ++GLP
Sbjct: 6 GRVMALDVGERRIGVALSDPTRMLASPLTTIRAVPRSTALKRILTLIRDYQVTALVVGLP 65
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L MNG GP+ + FV + + +P F DERLTTV+A++++ID+ + ++R ++
Sbjct: 66 LTMNGDIGPQATLVQQFVDEL-RPLIDIPIFFVDERLTTVAAERMMIDLKIKPEQRRARI 124
Query: 137 DSIAAALILQEVLDRIS 153
D +AA++ILQ+ LD
Sbjct: 125 DEVAASIILQDFLDSQR 141
>gi|17230592|ref|NP_487140.1| Holliday junction resolvase-like protein [Nostoc sp. PCC 7120]
gi|75910008|ref|YP_324304.1| Holliday junction resolvase-like protein [Anabaena variabilis ATCC
29413]
gi|32130049|sp|Q8YSI5|RUVX_ANASP RecName: Full=Putative Holliday junction resolvase
gi|146325551|sp|Q3M6H7|RUVX_ANAVT RecName: Full=Putative Holliday junction resolvase
gi|17132194|dbj|BAB74799.1| alr3100 [Nostoc sp. PCC 7120]
gi|75703733|gb|ABA23409.1| Holliday junction resolvase YqgF [Anabaena variabilis ATCC 29413]
Length = 151
Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KR+G+A D A + R + ++ + + + ++GLP +M
Sbjct: 8 LGLDVGRKRVGVAGCDRTGLIATGITTVERTSFDRDVQQIQNIVNERQVQVLVVGLPYSM 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + F + + +P + DERLT+ A+Q+LI NVS + +D
Sbjct: 68 DGSLGFQARQVQKFTSRLAKA-LQLPVEYVDERLTSFQAEQMLIAENVSPSRNKGLIDRK 126
Query: 140 AAALILQEVLD 150
AAALILQ+ LD
Sbjct: 127 AAALILQQWLD 137
>gi|224539751|ref|ZP_03680290.1| hypothetical protein BACCELL_04660 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518629|gb|EEF87734.1| hypothetical protein BACCELL_04660 [Bacteroides cellulosilyticus
DSM 14838]
Length = 140
Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + + +L ++ E + ++GL
Sbjct: 1 MSRILAIDYGKKRTGIAVSDTLQMIANGLTTVPTH---ELLTFILDYVGKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + FV + + +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNEASENMKRIEPFVRLLKKKLPAMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQSYLENKRF 138
>gi|171322539|ref|ZP_02911329.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MEX-5]
gi|171092132|gb|EDT37543.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MEX-5]
Length = 149
Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + + + + D G KRIG+AI + R A + + +
Sbjct: 1 MSGASARDATLLAFDYGEKRIGVAIGNALTRSARALVVISNLNREHRFKAVGDLLAEWRP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLP++ +G+ + F + + + + +P + DER ++V A+ L + NV
Sbjct: 61 DALVVGLPMHPDGTPHEMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ R + +D+ AA +ILQ+ LD++S E
Sbjct: 120 GRARAEMLDAEAARVILQQYLDQLSDHEHH 149
>gi|159900150|ref|YP_001546397.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus ATCC
23779]
gi|159893189|gb|ABX06269.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus ATCC
23779]
Length = 158
Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ I ++D+G KRIG+A+ DP R A +P L + + +LL IT + +I
Sbjct: 5 PTHGRIIALDVGNKRIGVAMCDPDRIIASGQPTLPAQPTDKAYAQLLHMITEHEVVEVVI 64
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL + G G + + +AF + +++ +P +DER T+V A++ L M + + K
Sbjct: 65 GLPLTLRGEVGAQAKAVQAFSRGL-EKRTKIPITLYDERFTSVEAERSLEAMGIKKSKHR 123
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD +AA LILQ+ + I+
Sbjct: 124 DHVDELAAILILQDYMSSIA 143
>gi|71909503|ref|YP_287090.1| Holliday junction resolvase-like protein [Dechloromonas aromatica
RCB]
gi|146325566|sp|Q478W1|RUVX_DECAR RecName: Full=Putative Holliday junction resolvase
gi|71849124|gb|AAZ48620.1| Holliday junction resolvase YqgF [Dechloromonas aromatica RCB]
Length = 146
Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G KRIG+A + AHP + + + + ++GL
Sbjct: 1 MGTVLAFDFGEKRIGVATGETMLCSAHPLTTIHAESNEDRFAAIGKLVAEWQPEQLVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + +G+ F + R+ +P F DERLT++ A+ L + + K
Sbjct: 61 PTHADGTPHEMTRLATKFGERLA-RRFNLPVSFADERLTSLDAEARLRETGRNSKSAKPL 119
Query: 136 VDSIAAALILQEVLDR 151
+D++AA LILQ +
Sbjct: 120 LDAVAAQLILQTWFES 135
>gi|218259649|ref|ZP_03475312.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii
DSM 18315]
gi|218224965|gb|EEC97615.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii
DSM 18315]
Length = 140
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++D + A+ + ++T+ L +++ E + F++GL
Sbjct: 1 MGRIIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTKF---LADYVSREPVERFVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + AFV ++ +P ++DER T+V A + ++D + +KKR
Sbjct: 58 PKQMNNELSENMKYVEAFVAHLKRTIPDIPVEYYDERFTSVLAHKAMLDGGLKKKKRQDK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ +
Sbjct: 118 GLVDEISAVIILQSYLENKKY 138
>gi|332991910|gb|AEF01965.1| Holliday junction resolvase-like protein [Alteromonas sp. SN2]
Length = 144
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG+A+ A P L + + ++GL
Sbjct: 6 SRTVLAFDFGTKSIGVAVGQEITGTASPLAALKARDGIPDWNVIEKLYEEWQPQLVVVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E + F + + R V DERLTT A+ +L ++ +K +K
Sbjct: 66 PLNMDGTEQEVTQRAKKFANRLHGR-FKVAVDLCDERLTTTDAKSMLFELGGYKKLTKEK 124
Query: 136 VDSIAAALILQEVLDR 151
+DS++A +I ++
Sbjct: 125 IDSVSACVIFTSWVEN 140
>gi|58040808|ref|YP_192772.1| DNA integration/recombination/invertion protein [Gluconobacter
oxydans 621H]
gi|62900900|sp|Q5FND1|RUVX_GLUOX RecName: Full=Putative Holliday junction resolvase
gi|58003222|gb|AAW62116.1| DNA integration/recombination/invertion protein [Gluconobacter
oxydans 621H]
Length = 160
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 88/151 (58%), Gaps = 2/151 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + DL L+ Q + +D G+K IG+A++D A P L R+K+ + A EL
Sbjct: 1 MPLFNPHDLRNLLQSGQRVLGLDPGSKTIGVALTDVSLMLASPLIGLKRRKLGENAQELA 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+++ A ++GLPL+++GS GP + + + ++ + +P WDERL++ + +
Sbjct: 61 KIVRTQDVGALVVGLPLSLDGSFGPAARAASDWTQALSEK-LGIPAGLWDERLSSSAVNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
LI D +++R +R + VD +AAA +LQ LD
Sbjct: 120 FLIKDADMTRGRRAEVVDKMAAAYMLQGWLD 150
>gi|332535114|ref|ZP_08410924.1| putative holliday junction resolvase [Pseudoalteromonas
haloplanktis ANT/505]
gi|332035432|gb|EGI71930.1| putative holliday junction resolvase [Pseudoalteromonas
haloplanktis ANT/505]
Length = 149
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 3/144 (2%)
Query: 10 VKSLKP--NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
KSLKP + + D GTK IG+AI A + + + +
Sbjct: 3 KKSLKPQGERTVMGFDFGTKSIGIAIGQELTGSASSLKAVKAQDGIPNWDHIAVQVAEWQ 62
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
++GLPLNM+G+ + F + + + +P DERLTT A+ L +
Sbjct: 63 PDLMVVGLPLNMDGTSQEVTFKAKKFANRLHN-HYGIPVQTQDERLTTADAKARLFESGG 121
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
+ VD+++A +IL+ +
Sbjct: 122 YKNLGKGNVDNMSAVIILESFFES 145
>gi|148259884|ref|YP_001234011.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5]
gi|167012685|sp|A5FWW0|RUVX_ACICJ RecName: Full=Putative Holliday junction resolvase
gi|146401565|gb|ABQ30092.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5]
Length = 158
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 1/153 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++ + DL +L N + +D G+K IG+A+SD GRR A P + R K+ + A +L
Sbjct: 1 MTLFNLTDLASTLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMKRGKLAEAAATIL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
E AA IIGLPL+M+GS GP + R + H + R+ +P DERL++ + +
Sbjct: 61 DIARKEGAAALIIGLPLSMDGSIGPAAQAARDWAHAIA-RETGLPVAMMDERLSSAAVNR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
LI+ +V+R KR +VD+ AA+ +LQ LD ++
Sbjct: 120 ALIEADVTRAKRAGRVDAAAASYMLQGALDLLN 152
>gi|319902633|ref|YP_004162361.1| Holliday junction resolvase YqgF [Bacteroides helcogenes P 36-108]
gi|319417664|gb|ADV44775.1| Holliday junction resolvase YqgF [Bacteroides helcogenes P 36-108]
Length = 141
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + Q ++ ++ E + ++GL
Sbjct: 1 MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTH---QLLAFIIDYVAKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + FV ++ ++ +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNEVSENMRNIEPFVRSLRNKLPDMPIEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138
>gi|325680097|ref|ZP_08159663.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8]
gi|324108172|gb|EGC02422.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8]
Length = 140
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D G R G+AISD A P + + A ++ ++GLP+
Sbjct: 2 RILAVDYGDARTGIAISDNSEFLASPVCTITEYHADRLAQKVADIAKERGAGEIVVGLPI 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG++G R AF M+ V V WDER TTV+A Q L + NV KKR VD
Sbjct: 62 NMNGTKGERAEKCEAFAE-MLRGLVDVEVKMWDERSTTVTAHQYLNETNVRGKKRKAVVD 120
Query: 138 SIAAALILQEVL 149
++AA +IL+ L
Sbjct: 121 TVAATIILESYL 132
>gi|29345829|ref|NP_809332.1| Holliday junction resolvase-like protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|253567815|ref|ZP_04845226.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|32130022|sp|Q8AAP5|RUVX_BACTN RecName: Full=Putative Holliday junction resolvase
gi|29337722|gb|AAO75526.1| putative endonuclease [Bacteroides thetaiotaomicron VPI-5482]
gi|251841888|gb|EES69968.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 138
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ + ++ E + IIGL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTLQLIANGLTTVPTHELLNF---IGGYVAKEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + FV ++ R +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNEASENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138
>gi|237716075|ref|ZP_04546556.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262407687|ref|ZP_06084235.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|298480835|ref|ZP_06999030.1| Holliday junction resolvase [Bacteroides sp. D22]
gi|229443722|gb|EEO49513.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262354495|gb|EEZ03587.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|298272858|gb|EFI14424.1| Holliday junction resolvase [Bacteroides sp. D22]
Length = 138
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ + ++ E + IIGL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNF---IGEYMAKEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + FV ++ R +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138
>gi|78065437|ref|YP_368206.1| Holliday junction resolvase-like protein [Burkholderia sp. 383]
gi|146325557|sp|Q39J04|RUVX_BURS3 RecName: Full=Putative Holliday junction resolvase
gi|77966182|gb|ABB07562.1| Holliday junction resolvase YqgF [Burkholderia sp. 383]
Length = 149
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + + + + D G KRIG+A+ + R A + + +
Sbjct: 1 MSGASARDATLLAFDYGEKRIGVAVGNALTRSARALVVIQNLNREHRFKAVGDLLAEWRP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLP++ +G+ + F + + + + +P + DER ++V A+ L + NV
Sbjct: 61 DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ R + +D+ AA +ILQ+ LD++S E
Sbjct: 120 GRARAEMLDAEAARVILQQYLDQLSDHEHH 149
>gi|167756782|ref|ZP_02428909.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
gi|237734500|ref|ZP_04564981.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|167702957|gb|EDS17536.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
gi|229382320|gb|EEO32411.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 139
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
+ I +DLG++ G+AISD AH + A +++ I I ++
Sbjct: 1 MERILGLDLGSRTCGIAISDTLGMLAHGIETYRFRDDDYDRAAKHVVALINEHQIKTVVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +MNG G R + F + + V DERLTT AQ LI +VSRKKR
Sbjct: 61 GLPKHMNGDLGERAQISIMFKEMLEKEVPGLNVVLIDERLTTKVAQDQLIFADVSRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA ILQ LD
Sbjct: 121 QVIDKMAAVAILQGYLD 137
>gi|160915322|ref|ZP_02077535.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991]
gi|158433121|gb|EDP11410.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991]
Length = 137
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
+ +DLG++ +G+++SD A P + + ++ ++I I ++GL
Sbjct: 2 RVLGLDLGSRTLGVSVSDALGMIAQPVTTIRFEEEDYDSAFGQVQTYIKEYQIKTVVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG G R + F + + V V WDERLTTV+AQ+ILI +VSRKKR +
Sbjct: 62 PKHMNGDVGIRGDISIMFKERL--ETLGVTVVLWDERLTTVAAQRILIAADVSRKKRKKV 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ LD S
Sbjct: 120 IDQMAAVQILQGYLDSQS 137
>gi|253990752|ref|YP_003042108.1| Holliday junction resolvase-like protein [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|211639083|emb|CAR67695.1| Putative Holliday junction resolvase [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253782202|emb|CAQ85366.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 139
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GT+ IG AI A ++ + I+GL
Sbjct: 3 NRTIMAFDFGTRSIGAAIGQEITGTARALTSFKATDGIPNWQQIEKLLKEWQPDLVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + R V DERLTTV A+ L D + K
Sbjct: 63 PLNMDGTEQFVTIQARKFANRLHGR-FGVQVELQDERLTTVEARAHLFDRGGYKALDKGK 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDATSAVIILESWFEQ 137
>gi|186680854|ref|YP_001864050.1| Holliday junction resolvase-like protein [Nostoc punctiforme PCC
73102]
gi|186463306|gb|ACC79107.1| Holliday junction resolvase YqgF [Nostoc punctiforme PCC 73102]
Length = 158
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G KRIG+A D A + R Q ++ + + ++GLP +M
Sbjct: 14 LGLDFGRKRIGVAGCDRTGLIATGITTIERTSFEQDVEQIRQIVNEREVQILVMGLPYSM 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + F + + +P + DERLT+ A+Q+LI N S + +D
Sbjct: 74 DGSIGFQARQVQKFTTRLSKA-LKLPVEYVDERLTSFQAEQLLIAENRSPSRHKGLIDRK 132
Query: 140 AAALILQEVLD 150
AAALILQ+ LD
Sbjct: 133 AAALILQQWLD 143
>gi|198275232|ref|ZP_03207763.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135]
gi|198271815|gb|EDY96085.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135]
Length = 138
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++DP + A+ + ++ LL ++ E + ++G
Sbjct: 1 MSRILAIDYGRKRTGIAVTDPMQIIANGLTTVPTHELMDF---LLKYVAQEKVERIVVGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + + FV + + +P DER T+V A Q ++D + +K R
Sbjct: 58 PKQMNNEDSENMKYIKPFVAQLKKKLPDMPVELVDERFTSVLAHQAMLDGGLKKKARQDK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+
Sbjct: 118 ALVDEISATIILQSYLESRRM 138
>gi|91205622|ref|YP_537977.1| Holliday junction resolvase-like protein [Rickettsia bellii
RML369-C]
gi|157827335|ref|YP_001496399.1| Holliday junction resolvase-like protein [Rickettsia bellii OSU
85-389]
gi|146325604|sp|Q1RIC6|RUVX_RICBR RecName: Full=Putative Holliday junction resolvase
gi|167012755|sp|A8GU80|RUVX_RICB8 RecName: Full=Putative Holliday junction resolvase
gi|91069166|gb|ABE04888.1| Putative endonuclease [Rickettsia bellii RML369-C]
gi|157802639|gb|ABV79362.1| Holliday junction resolvase-like protein [Rickettsia bellii OSU
85-389]
Length = 154
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN P+ SID G+K+IG+AIS+ R A P + LL
Sbjct: 1 MIINNLQEFYRLLLPNAPLISIDYGSKKIGIAISNQERNIAMPLNIITEASKKAIIASLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I +IGLP++M+G + + F + + +P DERLTT +A
Sbjct: 61 EKIEQYKACGIVIGLPIDMSGMQTEQSAIVIKFAEELTK-SINLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L + RK+R D++AA++IL+ VL+ I+ L
Sbjct: 120 FLKSFGIKRKERNNNDDAVAASMILETVLNSINKL 154
>gi|37520701|ref|NP_924078.1| Holliday junction resolvase-like protein [Gloeobacter violaceus PCC
7421]
gi|62901004|sp|Q7NLJ1|RUVX_GLOVI RecName: Full=Putative Holliday junction resolvase
gi|35211696|dbj|BAC89073.1| gll1132 [Gloeobacter violaceus PCC 7421]
Length = 156
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D+G+KRIG+A DP A +VR + + +I A +IGLP
Sbjct: 5 SVLGLDVGSKRIGVAGCDPTGLIASGLETIVRCNLGADLDAIRHWIERRRAQAVVIGLPR 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNGS GP+ H + F + R + VP + DERL+TV A + L VS +R +D
Sbjct: 65 NMNGSLGPQAHRIQHFGQQLA-RVIDVPIDYVDERLSTVQAGRALQS--VSATRRKALID 121
Query: 138 SIAAALILQEVLD 150
AAA+ILQ+ LD
Sbjct: 122 QQAAAIILQQWLD 134
>gi|304391702|ref|ZP_07373644.1| putative Holliday junction resolvase [Ahrensia sp. R2A130]
gi|303295931|gb|EFL90289.1| putative Holliday junction resolvase [Ahrensia sp. R2A130]
Length = 160
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 59/151 (39%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
+ +L+ + + IDLGTK IGLAISD + P + R K T +L F T
Sbjct: 8 ELAQFADALQGSGRLLGIDLGTKTIGLAISDENWAISSPVRTIKRTKFTPDVQAMLEFAT 67
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
E ++ +IGLPLNM+GSEGPR S+RAF N+ R +P WDE L+T A + +
Sbjct: 68 AERVSGIVIGLPLNMDGSEGPRAQSSRAFARNL-SRLTELPIQLWDESLSTSEALEGVSA 126
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
++ K K+D++AA+LILQ D + L
Sbjct: 127 KKAAQMKADGKLDALAASLILQGCCDAMRAL 157
>gi|224023748|ref|ZP_03642114.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM
18228]
gi|224016970|gb|EEF74982.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM
18228]
Length = 142
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++DP + A+ + Q LL ++T E++ I+G
Sbjct: 1 MSRIIAIDYGRKRTGIAVTDPMQIIANGLTTVPTH---QLMDFLLKYVTQESVERIIVGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + + F++ + + +P DER T+V A Q ++ + +K R K
Sbjct: 58 PKQMNNEDSENMKNIIPFINQLKKKLPKIPVELVDERFTSVLAHQAMLAGGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISFL 155
VD I+A +ILQ L+ +
Sbjct: 118 ALVDEISATIILQSYLEGKRNM 139
>gi|90409104|ref|ZP_01217226.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3]
gi|90309778|gb|EAS37941.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3]
Length = 149
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
KP + + D G+K IG+A A P + + L I II
Sbjct: 8 KPLKSLMGFDFGSKSIGIATGQMITMTAQPLLAIKAQNGIPNWDNLEQLIKEWQPDMLII 67
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+G+E + F + + R V DERLTT SA++ + ++ +
Sbjct: 68 GLPLNMDGTEQYITQRAKKFANRLHGR-FGVKIALQDERLTTASAKEFIFELGGYKALDK 126
Query: 134 QKVDSIAAALILQEVLDR 151
K+DS++AALIL+ + +
Sbjct: 127 GKIDSVSAALILESWMSQ 144
>gi|268608523|ref|ZP_06142250.1| Holliday junction resolvase YqgF [Ruminococcus flavefaciens FD-1]
Length = 143
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I S+D G R G+A+ A P + K + + + + ++G P N
Sbjct: 3 IMSVDFGDARTGIAVCGKSEMIASPVTVIPEKDFDKCIEKTAALAKEQRAEQIVVGYPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G R F + + +P WDER TTVSA L N KKR VD+
Sbjct: 63 MNGTIGERCEKCTLFAEKL-EEMTGIPTRLWDERCTTVSAHNYLNVTNTRGKKRKNVVDA 121
Query: 139 IAAALILQEVLDRIS 153
+AA +IL+ L+
Sbjct: 122 VAAVIILESYLEYRK 136
>gi|70733116|ref|YP_262889.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
Pf-5]
gi|146325591|sp|Q4K4E4|RUVX_PSEF5 RecName: Full=Putative Holliday junction resolvase
gi|68347415|gb|AAY95021.1| conserved hypothetical protein TIGR00250 [Pseudomonas fluorescens
Pf-5]
Length = 145
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 6 ILGFDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+GS F + + + VPF DERLTT A+ + L R VD
Sbjct: 66 MDGSPSDMCVRAEKFARRL-NGRFNVPFYTHDERLTTFEAKGERLARGGQKGSYRDNPVD 124
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD + L
Sbjct: 125 AIAAALLLQGWLDENAGL 142
>gi|157372262|ref|YP_001480251.1| Holliday junction resolvase-like protein [Serratia proteamaculans
568]
gi|167012758|sp|A8GJ33|RUVX_SERP5 RecName: Full=Putative Holliday junction resolvase
gi|157324026|gb|ABV43123.1| Holliday junction resolvase YqgF [Serratia proteamaculans 568]
Length = 140
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG AI A + + ++ + ++GL
Sbjct: 3 NRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + R V DERL+TV A+ L D R
Sbjct: 63 PLNMDGTEQLVTEQARKFANRLHGR-FGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ +R
Sbjct: 122 VDSASAVVILESWFER 137
>gi|326403186|ref|YP_004283267.1| putative Holliday junction resolvase [Acidiphilium multivorum
AIU301]
gi|325050047|dbj|BAJ80385.1| putative Holliday junction resolvase [Acidiphilium multivorum
AIU301]
Length = 158
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 1/153 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++ + DL +L N + +D G+K IG+A+SD GRR A P + R K+ +A +L
Sbjct: 1 MTLFNLTDLASTLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMKRGKLADSAATIL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
E AA IIGLPL+M+GS GP + R + H + R+ +P DERL++ + +
Sbjct: 61 DIARKEGAAALIIGLPLSMDGSIGPAAQAARDWAHAIA-RETGLPVAMMDERLSSAAVNR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
LI+ +V+R KR +VD+ AA+ +LQ LD ++
Sbjct: 120 ALIEADVTRAKRAGRVDAAAASYMLQGALDLLN 152
>gi|157828326|ref|YP_001494568.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165933035|ref|YP_001649824.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Iowa]
gi|167012757|sp|A8GRN5|RUVX_RICRS RecName: Full=Putative Holliday junction resolvase
gi|189046103|sp|B0BX42|RUVX_RICRO RecName: Full=Putative Holliday junction resolvase
gi|157800807|gb|ABV76060.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165908122|gb|ABY72418.1| hypothetical cytosolic protein [Rickettsia rickettsii str. Iowa]
Length = 154
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN P+ +ID G+K++G+A+S+ A P + LL
Sbjct: 1 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINTKIVITVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I + IIGLP++M+G+ + + F + + +P DERLTT +A
Sbjct: 61 NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+L V RK R D++AA++IL+ VLD I +
Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154
>gi|260913265|ref|ZP_05919747.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
gi|260632852|gb|EEX51021.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
Length = 140
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG A+ R A P + + + ++GLPL
Sbjct: 4 TVLAFDFGTKSIGCAVGQSITRTAQALPAFKAQDGIPNWDAIEKCLNEWRPDLVVVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E R F + + + + V DERLTT A+ + + + KVD
Sbjct: 64 NMDGTEQELTTRARKFANRL-NGRFGVQVELQDERLTTTEARAEIFERGGYKALNKSKVD 122
Query: 138 SIAAALILQEVLDR 151
I+A LIL+ ++
Sbjct: 123 GISACLILESWFEK 136
>gi|169350060|ref|ZP_02866998.1| hypothetical protein CLOSPI_00800 [Clostridium spiroforme DSM 1552]
gi|169293273|gb|EDS75406.1| hypothetical protein CLOSPI_00800 [Clostridium spiroforme DSM 1552]
Length = 139
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73
+ I +DLG++ G+A+SD AH Q A ++ I I ++
Sbjct: 1 MEKILGLDLGSRTCGIAMSDALGMLAHGLETYRFNDGNYKQAANYVVEIINKNQIKTVVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +MNG G R + F + + + V DERLTT AQ LI +VSRKKR
Sbjct: 61 GLPKHMNGDLGERAQISIMFKEMLEKKVAGLNVVLVDERLTTKVAQDRLIFADVSRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA ILQ LD
Sbjct: 121 QVIDKMAAVAILQGYLD 137
>gi|154490275|ref|ZP_02030536.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC
43184]
gi|154089167|gb|EDN88211.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC
43184]
Length = 140
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++D + A+ + ++T+ L +++ E + F++GL
Sbjct: 1 MGRIIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTRF---LADYVSREPVERFVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + AFV ++ +P ++DER T+V A + ++D + +KKR
Sbjct: 58 PKQMNNELSENMRYVEAFVTHLKRTIPDIPVEYYDERFTSVLAHKAMLDGGLKKKKRQDK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ +
Sbjct: 118 GLVDEISAVIILQSYLENKKY 138
>gi|282866221|ref|ZP_06275268.1| Holliday junction resolvase YqgF [Streptomyces sp. ACTE]
gi|282559005|gb|EFB64560.1| Holliday junction resolvase YqgF [Streptomyces sp. ACTE]
Length = 154
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 64/146 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V L + ++G
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGRIVEEYEPIEVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP RAF + VP DER++TV+A Q L V+ KK
Sbjct: 62 LPRSLGGGEGPAAVKVRAFAQVLARAIAPVPVRLVDERMSTVTATQGLRASGVTSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ L+ ++ G
Sbjct: 122 VIDQAAAVVILQNALESERASGAAPG 147
>gi|255008472|ref|ZP_05280598.1| Holliday junction resolvase-like protein [Bacteroides fragilis
3_1_12]
gi|313146201|ref|ZP_07808394.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313134968|gb|EFR52328.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 138
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ + +++ E + IIGL
Sbjct: 1 MSRIIAIDYGRKRTGIAVSDAMQIIANGLTTVPSHELLDF---ITNYVKQEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + FV ++ R +P + DER T+V A + +I+ + +K R K
Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLRKRLPDIPVEYVDERFTSVLAHRTMIEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRIS 153
VD I+A +ILQ L+
Sbjct: 118 ALVDEISATIILQSYLESKR 137
>gi|256852221|ref|ZP_05557607.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260661747|ref|ZP_05862658.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii 115-3-CHN]
gi|282932651|ref|ZP_06338065.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
gi|297205613|ref|ZP_06923009.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii
JV-V16]
gi|256615267|gb|EEU20458.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260547494|gb|EEX23473.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii 115-3-CHN]
gi|281303225|gb|EFA95413.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
gi|297150191|gb|EFH30488.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii
JV-V16]
Length = 148
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISD A + + + + ++ F++GL
Sbjct: 2 RLLGLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKIVREYDVTGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--VSRKKRI 133
P NM+GS+G V+ ++ + + + K +P + DERLTT+ A ++LI+ RKKR
Sbjct: 62 PKNMDGSDGASVNRSKNYGKRL-EEKFSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA LILQ LD
Sbjct: 121 EVIDQMAAVLILQNYLD 137
>gi|37525150|ref|NP_928494.1| Holliday junction resolvase-like protein [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|62901002|sp|Q7N7G7|RUVX_PHOLL RecName: Full=Putative Holliday junction resolvase
gi|36784576|emb|CAE13476.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 139
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GT+ IG AI A ++ + I+GL
Sbjct: 3 NRTIMAFDFGTRSIGAAIGQEITGTARALTSFKATDGIPNWGQIEKLLKEWQPDLVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + R V DERLTTV A+ L D + K
Sbjct: 63 PLNMDGTEQFVTVQARKFANRLHGR-FGVQVQLQDERLTTVEARAHLFDRGGYKALNKGK 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDATSAVIILESWFEQ 137
>gi|113969542|ref|YP_733335.1| Holliday junction resolvase-like protein [Shewanella sp. MR-4]
gi|114046775|ref|YP_737325.1| Holliday junction resolvase-like protein [Shewanella sp. MR-7]
gi|117919648|ref|YP_868840.1| Holliday junction resolvase-like protein [Shewanella sp. ANA-3]
gi|113884226|gb|ABI38278.1| Holliday junction resolvase YqgF [Shewanella sp. MR-4]
gi|113888217|gb|ABI42268.1| Holliday junction resolvase YqgF [Shewanella sp. MR-7]
gi|117611980|gb|ABK47434.1| Holliday junction resolvase YqgF [Shewanella sp. ANA-3]
Length = 141
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GTK IG+AI A P L E+ I ++GLP
Sbjct: 4 KTVLGFDFGTKSIGVAIGQQITASATPLLSLKAVDGIPNWDEIGKLIKEWQPDLVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E H R F + + + K V V DERLTT A+ L ++ + +V
Sbjct: 64 LNMDGTEQEMTHRARKFANRL-NAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQV 122
Query: 137 DSIAAALILQEVLDR 151
D+++A LI++ +
Sbjct: 123 DAVSAVLIVESYFEN 137
>gi|221201078|ref|ZP_03574118.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD2M]
gi|221206470|ref|ZP_03579483.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD2]
gi|221213802|ref|ZP_03586776.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD1]
gi|221166591|gb|EED99063.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD1]
gi|221173779|gb|EEE06213.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD2]
gi|221178928|gb|EEE11335.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD2M]
Length = 149
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + + + + D G KRIG+AI + R A + + +
Sbjct: 1 MSGTSARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLP++ +G+ + F + + + + +P + DER ++V A+ + + NV
Sbjct: 61 DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGMRERNVR 119
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLE 156
+ R +D+ AA +ILQ+ LD++S E
Sbjct: 120 GRARADMLDAEAARVILQQYLDQLSDHE 147
>gi|239978414|ref|ZP_04700938.1| hypothetical protein SalbJ_03203 [Streptomyces albus J1074]
gi|291450310|ref|ZP_06589700.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291353259|gb|EFE80161.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 158
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 1/152 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ L+ + ++D+G RIG+A DP A P + + V L + +
Sbjct: 1 MSGVLRRGRR-LAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLAALVEEYEP 59
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP ++ G EGP R F + VP DER++TV+A Q + V
Sbjct: 60 IEVVVGLPRSLKGGEGPAAVKVRGFAQELARTIAPVPVRLVDERMSTVTAAQGMRASGVR 119
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
KK +D AA +ILQ L+ + G
Sbjct: 120 SKKGRAVIDQAAAVVILQSALESERASGDAPG 151
>gi|239996734|ref|ZP_04717258.1| Holliday junction resolvase-like protein [Alteromonas macleodii
ATCC 27126]
Length = 143
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GTK IG+A+ A P L + + ++GL
Sbjct: 6 NRTVLAFDFGTKSIGVAVGQEITGTASPLAALKARDGIPDWTLIEKLYEEWQPQIVVVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + R V DERLTT A+ +L ++ +K K
Sbjct: 66 PLNMDGTEQEMTQRARKFANRLHGR-FKVAVDTCDERLTTTDAKAMLFELGGYKKLTKDK 124
Query: 136 VDSIAAALILQEV 148
VDS++A +I
Sbjct: 125 VDSVSACVIFASW 137
>gi|126657653|ref|ZP_01728808.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110]
gi|126621109|gb|EAZ91823.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110]
Length = 143
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KRIG+A D A + R+ Q +L + +T +IGLP +M
Sbjct: 7 LGLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDVQQLQTLVTEREAQLLVIGLPYSM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + F I + + +P + DERLT+V A+ L + VD +
Sbjct: 67 DGSIGFQAKQVQKFAKR-ISKALELPVEYIDERLTSVEAETKLKAQKKYSRHNKGLVDRL 125
Query: 140 AAALILQEVLDRISF 154
AA +ILQ+ LD+
Sbjct: 126 AATIILQQWLDQRRA 140
>gi|309775358|ref|ZP_07670363.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
3_1_53]
gi|308916875|gb|EFP62610.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
3_1_53]
Length = 137
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +DLG+K +G+++SD A P + ++ +I + ++GL
Sbjct: 2 RILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYDAAFEQVQKYIKEFQVTTAVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG G R + F + + + V WDERLTTV+A++ILI +VSRKKR +
Sbjct: 62 PKHMNGDVGIRGEISVMFKEKL--ETLGLEVVLWDERLTTVAAEKILISADVSRKKRKKI 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ LD +
Sbjct: 120 IDQMAAVQILQSYLDSKN 137
>gi|157803931|ref|YP_001492480.1| Holliday junction resolvase-like protein [Rickettsia canadensis
str. McKiel]
gi|167012756|sp|A8EZB2|RUVX_RICCK RecName: Full=Putative Holliday junction resolvase
gi|157785194|gb|ABV73695.1| Holliday junction resolvase-like protein [Rickettsia canadensis
str. McKiel]
Length = 154
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN + +ID G+K++G+A+S+ R A P + T +L
Sbjct: 1 MIIKNLQEFYRLLIPNTQLIAIDYGSKKLGIAMSNGERSIAMPLNTITVVNKTAVINSVL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
S I I +IGLP++M+G + + F + +P DERLTT +A
Sbjct: 61 SIIAKYKICGVVIGLPIDMSGVVTQQTNIVMKFAEELAK-YTNLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
L V RK R D++AA++IL+ VLD I
Sbjct: 120 FLKSFGVKRKDRNNNDDAVAASMILETVLDSIK 152
>gi|227894661|ref|ZP_04012466.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
DSM 16047]
gi|227863556|gb|EEJ70977.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
DSM 16047]
Length = 142
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A+SD A + + L + + F++GL
Sbjct: 2 RLLGLDVGSKTVGVAVSDELGITAQKLETIHIDETKYNFGMRPLKKLVRQYDPDGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133
P NM+G+ G V ++A+ + D+ +P + DERLTT+ ++++L++ + RKKR
Sbjct: 62 PKNMDGTSGASVARSKAYGKRLEDK-FGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137
>gi|51473526|ref|YP_067283.1| Holliday junction resolvase-like protein [Rickettsia typhi str.
Wilmington]
gi|62900964|sp|Q68X41|RUVX_RICTY RecName: Full=Putative Holliday junction resolvase
gi|51459838|gb|AAU03801.1| possible Holliday junction resolvase [Rickettsia typhi str.
Wilmington]
Length = 156
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN+P+ +ID G+K+IG+A+SD A P + LL
Sbjct: 1 MIIKNLQEFYRLLIPNEPLIAIDYGSKKIGVALSDQALAIAMPLNTITELNQRVIITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I + +IGLP++M+G + + F + + V +P DERLTT SA
Sbjct: 61 NIIEKYQVCGIVIGLPIDMSGGVTKQTNIVMKFADKL-KQSVSLPIYLQDERLTTKSANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L + RK R D++AA++IL+ VL+ I
Sbjct: 120 FLKSFGIKRKDRNNNDDAVAASMILEIVLNAIKRF 154
>gi|297155786|gb|ADI05498.1| Holliday junction resolvase-like protein [Streptomyces
bingchenggensis BCW-1]
Length = 154
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++ + I +ID+G RIG+A DP A P + + + L + + +
Sbjct: 1 MRRGRRI-AIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAAVVEEYEPIEVV 59
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP +++G EGP R F R VP DER+TTV+A Q L V+ KK
Sbjct: 60 VGLPRSLSGREGPAAAKVRTFAREFARRVAPVPVRLVDERMTTVTAAQGLRASGVTSKKG 119
Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
VD AA +ILQ L+ + G
Sbjct: 120 RSVVDQAAAVVILQSALETERVSGRAPG 147
>gi|119484674|ref|ZP_01619156.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106]
gi|119457492|gb|EAW38616.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106]
Length = 149
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KRIG+A D FA L R + +L + + ++GLP +M
Sbjct: 13 LGLDIGQKRIGVAGCDGLGLFATGLMTLKRSAFERDVAQLRELVEDRRVQVLVVGLPYSM 72
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+ G + + + + + +P + DERLT+ A+Q+L D ++S + +D
Sbjct: 73 NGTIGFQAKKVQKYATGLAKA-LDLPLEYVDERLTSFQAEQMLRDAHISPSRNKGLIDRK 131
Query: 140 AAALILQEVLDRIS 153
AAA+ILQ+ LD+
Sbjct: 132 AAAIILQQWLDQRR 145
>gi|302550142|ref|ZP_07302484.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes
DSM 40736]
gi|302467760|gb|EFL30853.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes
DSM 40736]
Length = 154
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 63/146 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + + L + ++G
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDIPAAQRRLKGLVEEYEPIEVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R FV + VP DER+TTV+A Q L V KK
Sbjct: 62 LPRSLKGGEGPAAVKVRGFVQELARMISPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ+ L+ + G
Sbjct: 122 VIDQAAAVVILQQALESERVSGKAPG 147
>gi|16332240|ref|NP_442968.1| Holliday junction resolvase-like-protein [Synechocystis sp. PCC
6803]
gi|6226451|sp|P74662|RUVX_SYNY3 RecName: Full=Putative Holliday junction resolvase
gi|1653870|dbj|BAA18780.1| sll1547 [Synechocystis sp. PCC 6803]
Length = 152
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KRIG+A D A +VR Q ++ + N+ ++GLP M
Sbjct: 8 LGLDVGRKRIGVAGCDGTGLIATGITTIVRSSYDQDIAQIKQLVEERNVNLLVVGLPYTM 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G G + + F + ++ +++P + DERL++V A+ L +D
Sbjct: 68 AGEIGSQAKQVQKFARRVAEQ-LHLPLEYMDERLSSVEAENQLKARKRFSSYDKGLIDQQ 126
Query: 140 AAALILQEVLD-RISFLESS 158
AA +ILQ+ LD R S L+
Sbjct: 127 AAEIILQQWLDLRRSHLQEG 146
>gi|238021394|ref|ZP_04601820.1| hypothetical protein GCWU000324_01293 [Kingella oralis ATCC 51147]
gi|237868374|gb|EEP69380.1| hypothetical protein GCWU000324_01293 [Kingella oralis ATCC 51147]
Length = 164
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+ D + + D G RIG A D R AHP + + + + I
Sbjct: 1 MPDFAA--PASGGCLAFDFGETRIGAAQGDCRIRIAHPIATITGNSNDEKFARIAALIQE 58
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I+GLP++++GSE R F H + + + +P + DERL++V A+++L +
Sbjct: 59 WQPENLIVGLPVHIDGSEHALTRLARKFGHRL-NGRFRLPVYWVDERLSSVYAEELLREN 117
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
V +K+ +D +AA ILQ D
Sbjct: 118 GVRGRKQKPVLDQVAAQAILQSFFDN 143
>gi|163852734|ref|YP_001640777.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1]
gi|163664339|gb|ABY31706.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1]
Length = 160
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 58/142 (40%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +DLGTK IG+A+SD GR+ A P + R K T ++S T + +IGLPL
Sbjct: 13 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPL 72
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSEGPR S+R+F N+ +F+DERL+T + + LI+ + SR +R + VD
Sbjct: 73 NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLIEADASRARRGELVD 131
Query: 138 SIAAALILQEVLDRISFLESSK 159
+AAA ILQ LD + + S
Sbjct: 132 KLAAAYILQSCLDVMGGMFSGA 153
>gi|218531575|ref|YP_002422391.1| Holliday junction resolvase YqgF [Methylobacterium chloromethanicum
CM4]
gi|218523878|gb|ACK84463.1| Holliday junction resolvase YqgF [Methylobacterium chloromethanicum
CM4]
Length = 165
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 58/142 (40%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +DLGTK IG+A+SD GR+ A P + R K T ++S T + +IGLPL
Sbjct: 18 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPL 77
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSEGPR S+R+F N+ +F+DERL+T + + LI+ + SR +R + VD
Sbjct: 78 NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLIEADASRARRGELVD 136
Query: 138 SIAAALILQEVLDRISFLESSK 159
+AAA ILQ LD + + S
Sbjct: 137 KLAAAYILQSCLDVMGGMFSGA 158
>gi|170725697|ref|YP_001759723.1| Holliday junction resolvase-like protein [Shewanella woodyi ATCC
51908]
gi|169811044|gb|ACA85628.1| Holliday junction resolvase YqgF [Shewanella woodyi ATCC 51908]
Length = 139
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + D GTK IG+AI A+P + E+ I ++GL
Sbjct: 3 SQTVLGFDYGTKSIGIAIGQSLTGSANPLLSIKAVDGIPKWEEIGMLIEEWRPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE + F N I + V DERLTT A+ L +M + +
Sbjct: 63 PLNMDGSEQEMTQRAKKFA-NRISGRFGVKVETQDERLTTADAKTRLFEMGGYKALTKGQ 121
Query: 136 VDSIAAALILQEVLDRI 152
VD+++A LI++ + +
Sbjct: 122 VDAMSAVLIVESYFESL 138
>gi|161525692|ref|YP_001580704.1| Holliday junction resolvase-like protein [Burkholderia multivorans
ATCC 17616]
gi|189349586|ref|YP_001945214.1| Holliday junction resolvase-like protein [Burkholderia multivorans
ATCC 17616]
gi|226725496|sp|A9AFI6|RUVX_BURM1 RecName: Full=Putative Holliday junction resolvase
gi|160343121|gb|ABX16207.1| Holliday junction resolvase YqgF [Burkholderia multivorans ATCC
17616]
gi|189333608|dbj|BAG42678.1| putative holliday junction resolvase [Burkholderia multivorans ATCC
17616]
Length = 149
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + + + + D G KRIG+AI + R A + + +
Sbjct: 1 MSGTSARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLP++ +G+ + F + + + + +P + DER ++V A+ + + NV
Sbjct: 61 DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGMRERNVR 119
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLE 156
+ R +D+ AA +ILQ+ LD++S E
Sbjct: 120 GRARTDMLDAEAARVILQQYLDQLSDHE 147
>gi|295085224|emb|CBK66747.1| conserved hypothetical protein TIGR00250 [Bacteroides xylanisolvens
XB1A]
Length = 138
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ + ++ E + IIGL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVSTHELLNF---IGEYMAKEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + FV ++ R +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138
>gi|149918360|ref|ZP_01906851.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1]
gi|149820886|gb|EDM80295.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1]
Length = 156
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 4/145 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D+G+K IGLA+SD G AH R L R+ + +L+ + + A ++GLPL
Sbjct: 2 RVLALDVGSKTIGLAVSDVGGSMAHAREVLRRQGHKLDSAAVLALASELEVRALVVGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNM----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
++GSEG R R F+ + + + +P WDER +T +A++ L++ +VSR KR
Sbjct: 62 ELDGSEGHRARLVRRFLKVLEAAIAEAERALPVHTWDERYSTAAAERTLLEADVSRAKRK 121
Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
Q +D++AA ILQ LD + S
Sbjct: 122 QNIDAVAAQFILQGWLDAQARRRES 146
>gi|332710808|ref|ZP_08430745.1| conserved hypothetical protein TIGR00250 [Lyngbya majuscula 3L]
gi|332350361|gb|EGJ29964.1| conserved hypothetical protein TIGR00250 [Lyngbya majuscula 3L]
Length = 151
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG+KRIG+A D A + R + +L + T + ++GLP +M
Sbjct: 7 LGLDLGSKRIGVAGCDGTGLIATGLTTIDRTSFQRDVDQLRELVETREVQLLVVGLPYSM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+ G + + + + +P + DERLT+ A+ L S + +D
Sbjct: 67 DGTLGFQARKVQKLATRLA-AALQLPVEYIDERLTSWEAESRLKASKRSLTQNKGLIDRH 125
Query: 140 AAALILQEVLDRIS 153
AAA+ILQ+ LDR
Sbjct: 126 AAAIILQQWLDRRR 139
>gi|116626054|ref|YP_828210.1| Holliday junction resolvase YqgF [Candidatus Solibacter usitatus
Ellin6076]
gi|116229216|gb|ABJ87925.1| Holliday junction resolvase YqgF [Candidatus Solibacter usitatus
Ellin6076]
Length = 140
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
I ++DLG +RIGLAISDP R A P LVR ++ L + + ++
Sbjct: 3 PDLSRILALDLGKRRIGLAISDPLRITAQGLPNLVRTRIRDDLDALEQLVKEREVGLVLL 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P+NM G+EG + R F M +++ VP WDERLT+V A ++L +S +KR
Sbjct: 63 GNPINMKGTEGRQSGWVREFATAM-EKRTGVPVKLWDERLTSVEAGRVLRSSGISIEKRA 121
Query: 134 QKVDSIAAALILQEVLDRI 152
VD ++A ++LQ LD +
Sbjct: 122 AAVDKLSAVILLQSYLDSL 140
>gi|119945031|ref|YP_942711.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37]
gi|119863635|gb|ABM03112.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37]
Length = 145
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 1/143 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + LK + D GTK IG+A A P + + I
Sbjct: 1 MTEPLKSPSNLLGFDFGTKSIGVATGQMITATAQPLSAIKANDGIPNWDIVEKVIRDWMP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLPLNM+GSE P + F + + + + V DERLTT SA++ +
Sbjct: 61 DLIVVGLPLNMDGSEQPITQRAKKFANRL-NGRFGVKVALQDERLTTASAKEFIFTHGGY 119
Query: 129 RKKRIQKVDSIAAALILQEVLDR 151
+ K+DS++AALIL+ ++
Sbjct: 120 KALEKGKIDSVSAALILESWMEN 142
>gi|82703594|ref|YP_413160.1| Holliday junction resolvase-like protein [Nitrosospira multiformis
ATCC 25196]
gi|146325582|sp|Q2Y653|RUVX_NITMU RecName: Full=Putative Holliday junction resolvase
gi|82411659|gb|ABB75768.1| Holliday junction resolvase YqgF [Nitrosospira multiformis ATCC
25196]
Length = 151
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Query: 6 IEDLVKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
+E+ K+ +P+ + D G KRIG+AI + AHP L K + + +
Sbjct: 1 MEEAEKASQPHAGTALAFDFGEKRIGVAIGNLELGLAHPLVTLSNKNKEECLKSIARLMD 60
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
++GLP++ +G+E +R F H + R + V DER T++SA L +
Sbjct: 61 EWKPVLLVVGLPVHADGTEHELTRRSRRFAHRLQAR-FGIRTVLEDERYTSISASSALDE 119
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISF 154
+V +++ Q +D IAA LILQ D+ +
Sbjct: 120 ASVRGRRQKQVLDQIAAQLILQSYFDQRNA 149
>gi|53712972|ref|YP_098964.1| Holliday junction resolvase-like protein [Bacteroides fragilis
YCH46]
gi|60681184|ref|YP_211328.1| Holliday junction resolvase-like protein [Bacteroides fragilis NCTC
9343]
gi|253563050|ref|ZP_04840507.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|265763069|ref|ZP_06091637.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|62900958|sp|Q64VP6|RUVX_BACFR RecName: Full=Putative Holliday junction resolvase
gi|81315746|sp|Q5LER0|RUVX_BACFN RecName: Full=Putative Holliday junction resolvase
gi|52215837|dbj|BAD48430.1| putative endonuclease [Bacteroides fragilis YCH46]
gi|60492618|emb|CAH07390.1| putative Holliday junction resolvase [Bacteroides fragilis NCTC
9343]
gi|251946826|gb|EES87108.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|263255677|gb|EEZ27023.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301162673|emb|CBW22220.1| putative Holliday junction resolvase [Bacteroides fragilis 638R]
Length = 138
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ + +++ E++ IIGL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQIIANGLTTVPTHELLDF---ITNYVKQESVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + FV ++ R +P + DER T+V A + +++ + +K R K
Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLKKRLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLD 150
VD I+A +ILQ L+
Sbjct: 118 ALVDEISATIILQSYLE 134
>gi|169334466|ref|ZP_02861659.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM
17244]
gi|169259183|gb|EDS73149.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM
17244]
Length = 144
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIG 74
+ I ++D G RIG+A+SD A + R K + + ++ +I + I+G
Sbjct: 2 KKRILALDYGDSRIGVAVSDALHITAQGICVIKRTKNIEEDIEKIKKYIKEYDTGLVILG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
PLN++G G R T F +++ K+ +P WDERL+T A++ L V+ +K+ +
Sbjct: 62 HPLNLSGERGTRALVTEEFC-DILKEKIDIPVELWDERLSTKEAERALEAGGVNWRKKRE 120
Query: 135 KVDSIAAALILQEVLDRISFL 155
+D +AA +IL LD + L
Sbjct: 121 VIDMMAAQIILSSYLDYNNNL 141
>gi|255529990|ref|YP_003090362.1| Holliday junction resolvase YqgF [Pedobacter heparinus DSM 2366]
gi|255342974|gb|ACU02300.1| Holliday junction resolvase YqgF [Pedobacter heparinus DSM 2366]
Length = 138
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I + D GTKRIG+A++DP + A + K + + L ++ E + AF+ G P
Sbjct: 3 RILAFDYGTKRIGIAVTDPLQIIATGLDTIHPKDIVEY---LKKYLLAEQVEAFVFGDPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
M+G+ + F + +P + DER T+ A Q ++ + ++ R K
Sbjct: 60 QMDGTPSESAQHVKGFAKTLKKTFPDIPQYWIDERFTSKLAHQAIMQSGLKKQDRKNKER 119
Query: 136 VDSIAAALILQEVLDRIS 153
VD+I+A +ILQ +++
Sbjct: 120 VDTISATIILQYFMEQHR 137
>gi|310829301|ref|YP_003961658.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612]
gi|308741035|gb|ADO38695.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612]
Length = 178
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + +D+G K IG+A+SDP A R + N+ + GLP
Sbjct: 40 ERLLGLDVGDKYIGIAVSDPLGITAQGYRTWKRGTRDDDLAFFTDVVEQFNVTTLVSGLP 99
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+M G+E + TR F + +++ + V+ DERLT+ +++++LI+ V R+KR + +
Sbjct: 100 KDMEGNETAQARKTRNFCQ-FLKKRLNLEVVYIDERLTSKASERVLIEGGVRREKRKEYI 158
Query: 137 DSIAAALILQEVLDR 151
D++AA +ILQ LD
Sbjct: 159 DTLAAQMILQVYLDS 173
>gi|127512076|ref|YP_001093273.1| Holliday junction resolvase-like protein [Shewanella loihica PV-4]
gi|126637371|gb|ABO23014.1| Holliday junction resolvase YqgF [Shewanella loihica PV-4]
Length = 139
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D GTK IG+AI A P L E+ + I ++GL
Sbjct: 3 SASVLGFDFGTKSIGVAIGQQITGSATPLASLKANDGIPRWEEIEALIQEWKPDLIVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F N I + V DERLTT A+ L +M + +
Sbjct: 63 PLNMDGTEQEMTQRARKFA-NRISGRFGVKTATQDERLTTADAKARLFEMGGYKALSKGQ 121
Query: 136 VDSIAAALILQEVLDRI 152
VDS++A LI++ + +
Sbjct: 122 VDSMSAVLIIESYFENL 138
>gi|315172764|gb|EFU16781.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1346]
Length = 140
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G++ +G+A+SD A + ++ L + + F++GL
Sbjct: 2 RIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN S GPR ++ A+ I +P + DERLTTV A++ L++ N SR KR +
Sbjct: 62 PKNMNNSIGPRAEASMAYGDK-IQELFQLPVDYQDERLTTVQAERFLVEQANASRAKRKK 120
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD S
Sbjct: 121 VIDKLAAVMILQNYLDAHS 139
>gi|227877598|ref|ZP_03995652.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
JV-V01]
gi|256844559|ref|ZP_05550045.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256849052|ref|ZP_05554485.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|262047534|ref|ZP_06020489.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
gi|293381588|ref|ZP_06627575.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1]
gi|295692278|ref|YP_003600888.1| holliday junction resolvase [Lactobacillus crispatus ST1]
gi|312977881|ref|ZP_07789627.1| putative Holliday junction resolvase [Lactobacillus crispatus
CTV-05]
gi|227862792|gb|EEJ70257.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
JV-V01]
gi|256613637|gb|EEU18840.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256713828|gb|EEU28816.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|260572110|gb|EEX28675.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
gi|290921858|gb|EFD98873.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1]
gi|295030384|emb|CBL49863.1| Holliday junction resolvase [Lactobacillus crispatus ST1]
gi|310895188|gb|EFQ44256.1| putative Holliday junction resolvase [Lactobacillus crispatus
CTV-05]
Length = 142
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISD A + + L + + F++GL
Sbjct: 2 RLLGLDVGSKTVGVAISDELGITAQKLETIQIDESRYNFGMRPLKKLVRQYEVDGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133
P NM+G+ G V ++A+ + + K +P + DERLTT+ ++++L++ + RKKR
Sbjct: 62 PKNMDGTSGSSVARSKAYGKRL-EEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137
>gi|325529367|gb|EGD06294.1| Holliday junction resolvase-like protein [Burkholderia sp. TJI49]
Length = 149
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + + + + D G KRIG+AI + R A + + +
Sbjct: 1 MSGTSARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLP++ +G+ + F + + + + +P + DER ++V A+ L + NV
Sbjct: 61 DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVSWVDERYSSVEAEAGLRERNVR 119
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ R+ +D+ AA +ILQ+ LD++S E
Sbjct: 120 GRARVDMLDAEAARVILQQYLDQLSDHEHH 149
>gi|254562494|ref|YP_003069589.1| Holliday junction resolvase [Methylobacterium extorquens DM4]
gi|254269772|emb|CAX25744.1| putative Holliday junction resolvase [Methylobacterium extorquens
DM4]
Length = 160
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 57/142 (40%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +DLGTK IG+A+SD GR+ A P + R K T +++ T + +IGLPL
Sbjct: 13 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVTLCATHAVGGLVIGLPL 72
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSEGPR S+R+F N+ +F+DERL+T + + LI+ + SR +R + VD
Sbjct: 73 NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLIEADASRARRGELVD 131
Query: 138 SIAAALILQEVLDRISFLESSK 159
+AAA ILQ LD + + S
Sbjct: 132 KLAAAYILQSCLDVMGGMFSGA 153
>gi|293400452|ref|ZP_06644597.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305478|gb|EFE46722.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 140
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
I +DLG++ +G+++SD A P + + ++ +I + ++GL
Sbjct: 2 RILGLDLGSRTLGVSVSDALGMIARPVETIRFEQDDYDSALTQIKKYIDEFQVKKAVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG G R + F + + V + WDERLTTV+A++ILI +VSRKKR +
Sbjct: 62 PKHMNGDVGIRGEISIMFKEKL--ETLGVEVILWDERLTTVAAERILISADVSRKKRKKV 119
Query: 136 VDSIAAALILQEVLDR 151
+D +AA ILQ LDR
Sbjct: 120 IDQMAAVQILQGYLDR 135
>gi|157374375|ref|YP_001472975.1| Holliday junction resolvase-like protein [Shewanella sediminis
HAW-EB3]
gi|157316749|gb|ABV35847.1| putative Holliday junction resolvase [Shewanella sediminis HAW-EB3]
Length = 139
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D GTK IG+AI A+P + E+ I ++GLPL
Sbjct: 5 TVLGFDYGTKSIGVAIGQSLTGSANPLLSINAVDGIPKWEEIGMLIEEWKPDLVVVGLPL 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSE + F N I+ + V DERLTT A+ L +M + +VD
Sbjct: 65 NMDGSEQEMTQRAKKFA-NRINGRFGVKIATQDERLTTADAKARLFEMGGYKALTKGQVD 123
Query: 138 SIAAALILQEVLDRI 152
+++A LI++ + +
Sbjct: 124 AMSAVLIIESYFENL 138
>gi|15892378|ref|NP_360092.1| Holliday junction resolvase-like protein [Rickettsia conorii str.
Malish 7]
gi|32130054|sp|Q92IG5|RUVX_RICCN RecName: Full=Putative Holliday junction resolvase
gi|15619527|gb|AAL02993.1| unknown [Rickettsia conorii str. Malish 7]
Length = 154
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN P+ +ID G K++G+A+S+ R A P + LL
Sbjct: 1 MIIKNLQEFYRLLIPNVPLIAIDYGNKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I + IIGLP++M+G+ + + F + + +P DERLTT +A
Sbjct: 61 NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELAK-SINLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+L V RK R D++AA++IL+ VLD I +
Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154
>gi|320011911|gb|ADW06761.1| Holliday junction resolvase YqgF [Streptomyces flavogriseus ATCC
33331]
Length = 157
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 62/146 (42%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V L + I+G
Sbjct: 5 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGQIVEEYEPIEVIVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP RAF +P DER+TTV+A Q L V KK
Sbjct: 65 LPRSLGGGEGPAAAKVRAFAQVFARAVAPIPVRLLDERMTTVTATQGLRASGVKSKKGRS 124
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ L+ S+ G
Sbjct: 125 VIDQAAAVVILQNALESERASGSAPG 150
>gi|258543587|ref|YP_003189020.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-01]
gi|256634665|dbj|BAI00641.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-01]
gi|256637721|dbj|BAI03690.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-03]
gi|256640775|dbj|BAI06737.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-07]
gi|256643830|dbj|BAI09785.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-22]
gi|256646885|dbj|BAI12833.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-26]
gi|256649938|dbj|BAI15879.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-32]
gi|256652928|dbj|BAI18862.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655982|dbj|BAI21909.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-12]
Length = 154
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L + DLV +L + + ID G K++GLA+SD R A P + R K+ Q A +
Sbjct: 1 MTLLSLTDLVATLPRHARLLGIDPGKKQVGLALSDVSRMVASPFQTVKRGKLGQMASFIR 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I ++G+PL+++GS GP ++R + + ++ +P WDERL++ + +
Sbjct: 61 DLAKEHEIGGMVVGIPLSLDGSFGPAAQASRDWALALSEQ-TGLPVCQWDERLSSSAVNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+LI + ++SR +R + VD +AAA ILQ LD +
Sbjct: 120 MLIDEADLSRARRAEMVDRLAAAYILQAALDSLP 153
>gi|302517972|ref|ZP_07270314.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78]
gi|302426867|gb|EFK98682.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78]
Length = 157
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 62/137 (45%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V + + + ++G
Sbjct: 5 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP RAF + VP DER+TTV+A Q L V+ KK
Sbjct: 65 LPRSLRGGEGPAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRS 124
Query: 135 KVDSIAAALILQEVLDR 151
+D AA +ILQ L+
Sbjct: 125 VIDQAAAVIILQTALES 141
>gi|107021941|ref|YP_620268.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
AU 1054]
gi|116688888|ref|YP_834511.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
HI2424]
gi|170732189|ref|YP_001764136.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
MC0-3]
gi|206561485|ref|YP_002232250.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
J2315]
gi|254246158|ref|ZP_04939479.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
gi|124107439|sp|Q1BYL0|RUVX_BURCA RecName: Full=Putative Holliday junction resolvase
gi|167012700|sp|A0K541|RUVX_BURCH RecName: Full=Putative Holliday junction resolvase
gi|226725494|sp|B1JWP0|RUVX_BURCC RecName: Full=Putative Holliday junction resolvase
gi|226725495|sp|B4ECT2|RUVX_BURCJ RecName: Full=Putative Holliday junction resolvase
gi|105892130|gb|ABF75295.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia AU 1054]
gi|116646977|gb|ABK07618.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia HI2424]
gi|124870934|gb|EAY62650.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
gi|169815431|gb|ACA90014.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia MC0-3]
gi|198037527|emb|CAR53464.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
Length = 149
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 1/150 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + + + + D G KRIG+AI + R A + + +
Sbjct: 1 MSGASARDATLLAFDYGEKRIGVAIGNALTRSARALVVIQNLNREHRFKAVGDLLAEWRP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLP++ +G+ + F + + + + +P + DER ++V A+ L + NV
Sbjct: 61 DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ R +D+ AA +ILQ+ LD++S E
Sbjct: 120 GRARTDMLDAEAARVILQQYLDQLSDHEHH 149
>gi|326798192|ref|YP_004316011.1| Holliday junction resolvase [Sphingobacterium sp. 21]
gi|326548956|gb|ADZ77341.1| Holliday junction resolvase [Sphingobacterium sp. 21]
Length = 137
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I + D GTKRIG+A++DP + A + K V + L +++ E + +F++G+P
Sbjct: 2 RIMAFDYGTKRIGVAVTDPLQIIATALTTIHPKDVIEY---LKKYVSQEQVESFVVGMPK 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
++GS+ + F++ + +P V DER T+ A + + + R KR +K
Sbjct: 59 QLDGSDSQSAVHVKGFINLLKKSFPQMPIVTMDERFTSKMASASIAESGLRRSKRQEKGL 118
Query: 136 VDSIAAALILQEVL 149
VD+I+A +ILQ+ L
Sbjct: 119 VDAISAVIILQDYL 132
>gi|163792874|ref|ZP_02186850.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199]
gi|159181520|gb|EDP66032.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199]
Length = 168
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 87/139 (62%), Gaps = 2/139 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I DL + L P + +D GTK IG+A+SD R A P + R+K ++ A E+L
Sbjct: 1 MAICKPADLHRLLGPGARLMGLDFGTKTIGIAVSDAALRVASPVTIIRRRKFSEDAAEIL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + NI F++GLPLNM+G+EGPR STR ++ R +P VF DER++T + ++
Sbjct: 61 ALVGSRNIGGFVVGLPLNMDGTEGPRCQSTRDLTAELLLRH-DLPTVFQDERMSTQAVER 119
Query: 121 ILI-DMNVSRKKRIQKVDS 138
+I + +++R +R + +DS
Sbjct: 120 AMISEADLTRGQRKKSIDS 138
>gi|238897811|ref|YP_002923490.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465568|gb|ACQ67342.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 145
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GTK IG+AI A P K T +++ ++ ++G PLN
Sbjct: 6 IIAFDFGTKSIGVAIGQNITETARPLTACKSKNGTPDWIKIERLLSEWYPDLVVVGFPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E P S R F H + R+ + VF DERL+T A+ L D + VD+
Sbjct: 66 MDGTEQPITESARQFGHALY-RRFGIKVVFHDERLSTAEARAYLFDKGGYQALNKSSVDA 124
Query: 139 IAAALILQEVL 149
+A +IL+
Sbjct: 125 TSAVIILESWF 135
>gi|332830441|gb|EGK03069.1| Holliday junction resolvase [Dysgonomonas gadei ATCC BAA-286]
Length = 141
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++D GTKR G+A+SD + A+ + + L +++ E++ I+GL
Sbjct: 1 MGRFLALDYGTKRTGIAVSDTLKIIANGLTTVPTHTL---FDYLKTYLEREDVECIIVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + R FV + + +P +DER T+ AQ+ +ID + +K R K
Sbjct: 58 PKQMNNEYSENMKHIRPFVKKLQNLYPDIPVEMYDERFTSALAQKTMIDAGLRKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRIS 153
VD I+A +ILQ ++ +
Sbjct: 118 ALVDEISAVIILQSYMESLR 137
>gi|29375778|ref|NP_814932.1| Holliday junction resolvase-like protein [Enterococcus faecalis
V583]
gi|227518457|ref|ZP_03948506.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX0104]
gi|227552987|ref|ZP_03983036.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
HH22]
gi|229546119|ref|ZP_04434844.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX1322]
gi|229550308|ref|ZP_04439033.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
ATCC 29200]
gi|255973080|ref|ZP_05423666.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255976119|ref|ZP_05426705.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256618786|ref|ZP_05475632.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256762206|ref|ZP_05502786.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256852851|ref|ZP_05558221.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256958695|ref|ZP_05562866.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256962207|ref|ZP_05566378.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256965397|ref|ZP_05569568.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257077951|ref|ZP_05572312.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|257082840|ref|ZP_05577201.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257085538|ref|ZP_05579899.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257086556|ref|ZP_05580917.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257089613|ref|ZP_05583974.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257415820|ref|ZP_05592814.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
gi|257419029|ref|ZP_05596023.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257422886|ref|ZP_05599876.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293383234|ref|ZP_06629150.1| putative Holliday junction resolvase [Enterococcus faecalis R712]
gi|293387611|ref|ZP_06632157.1| putative Holliday junction resolvase [Enterococcus faecalis S613]
gi|294781118|ref|ZP_06746468.1| RNAse YqgF [Enterococcus faecalis PC1.1]
gi|300859927|ref|ZP_07106015.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11]
gi|307268684|ref|ZP_07550053.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248]
gi|307273508|ref|ZP_07554752.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855]
gi|307274473|ref|ZP_07555656.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134]
gi|307279022|ref|ZP_07560080.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860]
gi|307288496|ref|ZP_07568482.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109]
gi|307291186|ref|ZP_07571071.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411]
gi|312899674|ref|ZP_07758998.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0470]
gi|312903954|ref|ZP_07763123.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0635]
gi|312907178|ref|ZP_07766169.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 512]
gi|312909797|ref|ZP_07768645.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 516]
gi|312951035|ref|ZP_07769943.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0102]
gi|62901023|sp|Q836B2|RUVX_ENTFA RecName: Full=Putative Holliday junction resolvase
gi|29343239|gb|AAO81002.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
V583]
gi|227074135|gb|EEI12098.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX0104]
gi|227177878|gb|EEI58850.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
HH22]
gi|229304571|gb|EEN70567.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
ATCC 29200]
gi|229308643|gb|EEN74630.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX1322]
gi|255964098|gb|EET96574.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255968991|gb|EET99613.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256598313|gb|EEU17489.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256683457|gb|EEU23152.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256711310|gb|EEU26348.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256949191|gb|EEU65823.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256952703|gb|EEU69335.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256955893|gb|EEU72525.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256985981|gb|EEU73283.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|256990870|gb|EEU78172.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256993568|gb|EEU80870.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256994586|gb|EEU81888.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256998425|gb|EEU84945.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257157648|gb|EEU87608.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257160857|gb|EEU90817.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257164710|gb|EEU94670.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291079412|gb|EFE16776.1| putative Holliday junction resolvase [Enterococcus faecalis R712]
gi|291082943|gb|EFE19906.1| putative Holliday junction resolvase [Enterococcus faecalis S613]
gi|294451796|gb|EFG20248.1| RNAse YqgF [Enterococcus faecalis PC1.1]
gi|300850745|gb|EFK78494.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11]
gi|306497840|gb|EFM67372.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411]
gi|306500571|gb|EFM69902.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109]
gi|306504147|gb|EFM73359.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860]
gi|306508867|gb|EFM77954.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134]
gi|306509847|gb|EFM78873.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855]
gi|306514996|gb|EFM83542.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248]
gi|310626206|gb|EFQ09489.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 512]
gi|310630990|gb|EFQ14273.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0102]
gi|310632674|gb|EFQ15957.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0635]
gi|311289755|gb|EFQ68311.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 516]
gi|311293180|gb|EFQ71736.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0470]
gi|315027757|gb|EFT39689.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX2137]
gi|315029152|gb|EFT41084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX4000]
gi|315031532|gb|EFT43464.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0017]
gi|315035052|gb|EFT46984.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0027]
gi|315145514|gb|EFT89530.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX2141]
gi|315147685|gb|EFT91701.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX4244]
gi|315151387|gb|EFT95403.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0012]
gi|315154072|gb|EFT98088.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0031]
gi|315157359|gb|EFU01376.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0043]
gi|315158422|gb|EFU02439.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0312]
gi|315162577|gb|EFU06594.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0645]
gi|315165420|gb|EFU09437.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1302]
gi|315166586|gb|EFU10603.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1341]
gi|315575738|gb|EFU87929.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0309B]
gi|315578303|gb|EFU90494.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0630]
gi|315579818|gb|EFU92009.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0309A]
gi|327534828|gb|AEA93662.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
OG1RF]
gi|329576586|gb|EGG58091.1| RNAse H domain protein, YqgF family [Enterococcus faecalis TX1467]
Length = 140
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G++ +G+A+SD A + ++ L + + F++GL
Sbjct: 2 RIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN S GPR ++ A+ I +P + DERLTTV A++ L++ + SR KR +
Sbjct: 62 PKNMNNSIGPRAEASMAYGDK-IQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKK 120
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD S
Sbjct: 121 VIDKLAAVMILQNYLDAHS 139
>gi|320540154|ref|ZP_08039809.1| putative Holliday junction resolvase [Serratia symbiotica str.
Tucson]
gi|320029820|gb|EFW11844.1| putative Holliday junction resolvase [Serratia symbiotica str.
Tucson]
Length = 140
Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D G+K IG AI A + + ++ + ++GL
Sbjct: 3 NRTVIAFDFGSKSIGAAIGQELTGSARALAAFKAQSGSPDWQKIAKLLQEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE P R F + + R V DERL+TV A+ L D R
Sbjct: 63 PLNMDGSEQPVTEQARKFANRLHGR-FGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ R
Sbjct: 122 VDSASAVVILESWFGR 137
>gi|119775606|ref|YP_928346.1| Holliday junction resolvase-like protein [Shewanella amazonensis
SB2B]
gi|119768106|gb|ABM00677.1| putative Holliday junction resolvase [Shewanella amazonensis SB2B]
Length = 139
Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D GTK IG+A+ A+P + ++ I +IGL
Sbjct: 1 MSTVMGFDFGTKSIGIAVGQSITGSANPLTSIKAVDGIPNWEDIGKLINEWKPDLLVIGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + + + V DERLTT A+ L ++ + +
Sbjct: 61 PLNMDGTEQEMTQRARKFANRL-NGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQ 119
Query: 136 VDSIAAALILQEVLDR 151
VD+++A LI++ +
Sbjct: 120 VDAVSAVLIVESYFEN 135
>gi|323465942|gb|ADX69629.1| Putative Holliday junction resolvase [Lactobacillus helveticus H10]
Length = 142
Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A+SD A + + L + + F++GL
Sbjct: 2 RLLGLDIGSKTVGVAVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133
P NM+G+ G V ++A+ + + K +P + DERLTT+ ++++L++ + RKKR
Sbjct: 62 PKNMDGTSGASVARSKAYGKRL-EEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137
>gi|302533384|ref|ZP_07285726.1| Holliday junction resolvase YqgF [Streptomyces sp. C]
gi|302442279|gb|EFL14095.1| Holliday junction resolvase YqgF [Streptomyces sp. C]
Length = 158
Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ +L+ + +ID+G RIG+A DP A P + + + L +
Sbjct: 1 MTMTLRRGRR-LAIDVGDARIGVASCDPDGVLATPVETVPGRDIPFAHRRLRQLVEEYEP 59
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP +++G EGP RAF + + V DER+TTV+A Q L +
Sbjct: 60 LEVVVGLPRSLSGREGPAAAKVRAFANELAKGIKPVTVRLVDERMTTVTAAQGLRASGRN 119
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
KK +D AA +ILQ L+
Sbjct: 120 AKKGRSVIDQAAAVVILQNALE 141
>gi|329113628|ref|ZP_08242406.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001]
gi|326697035|gb|EGE48698.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001]
Length = 154
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 90/154 (58%), Gaps = 2/154 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L + DLV +L + + ID G K++GLA+SD R A P + R K+ Q A +
Sbjct: 1 MTLLSLTDLVATLPRHARLLGIDPGKKQVGLALSDVSRMVASPFQTVKRGKLGQMASFIR 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
T I ++G+PL+++GS GP ++R + + ++ +P WDERL++ + +
Sbjct: 61 DLATEHEIGGMVVGIPLSLDGSFGPAAQASRDWALALSEQ-TGLPVCQWDERLSSSAVNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+LI + ++SR +R + VD +AAA ILQ LD +
Sbjct: 120 MLIDEADLSRARRAEMVDRLAAAYILQAALDSLP 153
>gi|270263056|ref|ZP_06191326.1| DNA integration/recombination/invertion protein [Serratia odorifera
4Rx13]
gi|270042744|gb|EFA15838.1| DNA integration/recombination/invertion protein [Serratia odorifera
4Rx13]
Length = 140
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG AI A + + ++ + ++GL
Sbjct: 3 NRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + R V DERL+TV A+ L D R
Sbjct: 63 PLNMDGTEQLVTDQARKFANRLHGR-FGVQIALHDERLSTVEARANLFDRGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDRIS 153
VDS +A +IL+ +R
Sbjct: 122 VDSASAVVILESWFERQR 139
>gi|94501646|ref|ZP_01308162.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65]
gi|94426222|gb|EAT11214.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65]
Length = 154
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GTKR+G+A+ + A + K +L + + F++GLP
Sbjct: 11 KRVMGFDFGTKRMGVAMGQRLTQQAQGISCINAKDGKPNWEQLDALVEEWQPDGFVVGLP 70
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NM+GSE F + R +P DERLTT A+ I + V
Sbjct: 71 FNMDGSESDMSRRANKFSKRLHGR-YGLPSYTIDERLTTFEAKHIARQQGHKGHYKSDPV 129
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D +AA IL+ L E S+
Sbjct: 130 DELAAQFILETWLSEFPLSEQSQ 152
>gi|315169885|gb|EFU13902.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1342]
Length = 140
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G++ +G+A+SD A + ++ L + + F++GL
Sbjct: 2 RIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN S GPR ++ A+ I +P + DERLTTV A++ L++ + SR KR +
Sbjct: 62 PKNMNNSIGPRAEASIAYGDK-IQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKK 120
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD S
Sbjct: 121 VIDKLAAVMILQNYLDAHS 139
>gi|291615388|ref|YP_003525545.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1]
gi|291585500|gb|ADE13158.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1]
Length = 148
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTKRIG+A+ + A P + +K + + AA ++GL
Sbjct: 7 SGTLLAFDFGTKRIGVAVGNTVSATARPLTTIGAEKNDLRFAAIAELLKEWQPAALVVGL 66
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P N +G+ +R F + + R +P + DER T+ +A L + +K+
Sbjct: 67 PCNDDGTPHEMTALSRRFANRLKGR-FNLPTLLIDERYTSAAASSALDKEGIHGRKQKNL 125
Query: 136 VDSIAAALILQEVLDRISF 154
+D AA ILQ D S
Sbjct: 126 IDQYAAQQILQAYFDEPSA 144
>gi|260102889|ref|ZP_05753126.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|260083302|gb|EEW67422.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|328462755|gb|EGF34644.1| Holliday junction resolvase-like protein [Lactobacillus helveticus
MTCC 5463]
Length = 142
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A+SD A + + L + + F++GL
Sbjct: 2 RLLGLDIGSKTVGVAVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133
P NM+G+ G V ++A+ + + K +P + DERLTT+ ++++L++ + RKKR
Sbjct: 62 PKNMDGTSGASVTRSKAYGKRL-EEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137
>gi|240140069|ref|YP_002964546.1| putative Holliday junction resolvase [Methylobacterium extorquens
AM1]
gi|240010043|gb|ACS41269.1| putative Holliday junction resolvase [Methylobacterium extorquens
AM1]
Length = 165
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +DLGTK IG+A+SD GR+ A P + R K T +++ T + +IGLPL
Sbjct: 18 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVTLCATHAVGGLVIGLPL 77
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSEGPR S+R+F N+ +F+DERL+T + + L++ + SR +R + VD
Sbjct: 78 NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLLEADASRARRGELVD 136
Query: 138 SIAAALILQEVLDRISFLESSK 159
+AAA ILQ LD + + S
Sbjct: 137 KLAAAYILQSCLDVMGGMFSGA 158
>gi|333028350|ref|ZP_08456414.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071]
gi|332748202|gb|EGJ78643.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071]
Length = 154
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 62/137 (45%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V + + + ++G
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP RAF + VP DER+TTV+A Q L V+ KK
Sbjct: 62 LPRSLRGGEGPAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRS 121
Query: 135 KVDSIAAALILQEVLDR 151
+D AA +ILQ L+
Sbjct: 122 VIDQAAAVIILQTALES 138
>gi|182439828|ref|YP_001827547.1| hypothetical protein SGR_6035 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178468344|dbj|BAG22864.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 161
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 1/151 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ +++ + ++D+G RIG+A DP A P + + V L +
Sbjct: 5 MTAMRRGRR-LAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPI 63
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++GLP ++ G EGP R F VP DER+TTV+A Q + V
Sbjct: 64 EVVLGLPRSLGGGEGPAAAKVREFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKS 123
Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160
KK +D AA +ILQ L+ + G
Sbjct: 124 KKGRSVIDQAAAVVILQNALESERASGNPPG 154
>gi|119470543|ref|ZP_01613246.1| Holliday junction resolvase-like protein [Alteromonadales bacterium
TW-7]
gi|119446244|gb|EAW27521.1| Holliday junction resolvase-like protein [Alteromonadales bacterium
TW-7]
Length = 149
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 3/144 (2%)
Query: 10 VKSLKP--NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
++ KP + + D GTK IG+A+ A + + + +
Sbjct: 3 KRTFKPQGERTVMGFDFGTKSIGIAVGQELTGSASSLKAVKAQDGIPNWDHIAVQVNEWQ 62
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
++GLPLNM+G+ + F + + + +P DERLTT A+ L +
Sbjct: 63 PDLMVVGLPLNMDGTSQEVTFKAKKFANRLHN-HYGIPVQTQDERLTTADAKARLFEQGG 121
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
+ VD+++A +IL+ +
Sbjct: 122 YKNLGKGNVDNMSAVIILESFFES 145
>gi|254383593|ref|ZP_04998943.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194342488|gb|EDX23454.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 158
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ +L+ + +ID+G RIG+A DP A P + + V L +
Sbjct: 1 MTMTLRRGRR-LAIDVGDARIGVASCDPDGVLATPVETVPGRDVPFAHRRLRQLVEEYEP 59
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP +++G EGP RAF + V DER+TTV+A Q L +
Sbjct: 60 LEVVVGLPRSLSGREGPAAVKVRAFAGELAKGIKPVTVRLVDERMTTVTAAQGLRASGKN 119
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
KK +D AA +ILQ L+
Sbjct: 120 AKKGRSVIDQAAAVVILQNALE 141
>gi|189220288|ref|YP_001940928.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4]
gi|189187146|gb|ACD84331.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4]
Length = 168
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I S+D G K IGLA++D A P L + + +L I ++ I+GLP
Sbjct: 24 AILSLDYGNKHIGLAVNDESFSIAIPLDPLPAEPYVKFIGKLKEIIVNYEVSLLIVGLPR 83
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GS GP R FV + + + +P F DERLTT A ++L + +++ +K+D
Sbjct: 84 NMDGSYGPAAEKVRQFVLKL-KQWIPIPVEFHDERLTTKLADRLLTQCGCNGREKKKKID 142
Query: 138 SIAAALILQEVLDRISFLESSKG 160
S AAA+ILQ LD + G
Sbjct: 143 SYAAAVILQSYLDVLPLKGKRAG 165
>gi|77361516|ref|YP_341091.1| Holliday junction resolvase-like protein [Pseudoalteromonas
haloplanktis TAC125]
gi|146325592|sp|Q3IFA0|RUVX_PSEHT RecName: Full=Putative Holliday junction resolvase
gi|76876427|emb|CAI87649.1| putative Holliday junction resolvase [Pseudoalteromonas
haloplanktis TAC125]
Length = 149
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 3/143 (2%)
Query: 10 VKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
K+ KP + + D GTK IG+AI A + + ++ +
Sbjct: 3 KKNFKPQGQRTVMGFDFGTKSIGIAIGQELTGSASSLKAVKAQDGIPNWDDIAVQVNEWQ 62
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
++GLPLNM+G+ + F + + + +P DERLTT A+ L +
Sbjct: 63 PDLMVVGLPLNMDGTAQEVTFKAKKFANRLHN-HYAIPVETQDERLTTADAKARLFEQGG 121
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
+ KVD+++A +IL+ +
Sbjct: 122 YKNLGKGKVDNMSAVIILESFFE 144
>gi|114564013|ref|YP_751527.1| Holliday junction resolvase-like protein [Shewanella frigidimarina
NCIMB 400]
gi|114335306|gb|ABI72688.1| Holliday junction resolvase YqgF [Shewanella frigidimarina NCIMB
400]
Length = 139
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D GTK IG+AI A P + ++ + ++GLP
Sbjct: 4 QTVLGFDYGTKSIGVAIGQAITASATPLLSIKAVDGIPNWDDIDKLLKEWQPDLVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E R F N I+ + V DERLTT A+ L ++ + +V
Sbjct: 64 LNMDGTEQEMTQRARKFA-NRINGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQV 122
Query: 137 DSIAAALILQEVLDR 151
D+++A LI++ +
Sbjct: 123 DAVSAVLIIESYFEN 137
>gi|317057236|ref|YP_004105703.1| Holliday junction resolvase YqgF [Ruminococcus albus 7]
gi|315449505|gb|ADU23069.1| Holliday junction resolvase YqgF [Ruminococcus albus 7]
Length = 140
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D G R G+A+SD A P + + A ++ + I+GLP+
Sbjct: 2 RILAVDYGDARTGIAVSDNSEMLASPVCTITEYHADRLAQKIADIAKEQGAGEIIVGLPI 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG++G R F +M+ V V WDER TTV+A + L + NV KKR VD
Sbjct: 62 NMNGTKGVRAEKCEEFA-DMLRALVSVEVRMWDERSTTVTAHRFLNETNVRGKKRKAVVD 120
Query: 138 SIAAALILQEVL 149
++AA +IL+ L
Sbjct: 121 TVAATIILESYL 132
>gi|333029958|ref|ZP_08458019.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011]
gi|332740555|gb|EGJ71037.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011]
Length = 139
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++DP + A+ + + L + E++ IIGL
Sbjct: 1 MGRILAIDYGRKRTGIAVTDPMQIIANGLTTVRTHDLMDF---LTDYTQKESVEKIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P M+ + + FV N + +P + DER T+V AQ+ +I+ + +K R K
Sbjct: 58 PKQMDNTPSESMKYIEPFVRNFQKKFPDMPLEYVDERFTSVIAQRTIIEAGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISFL 155
VD ++A +ILQ L+
Sbjct: 118 ALVDEVSATIILQTYLENKRLF 139
>gi|218282249|ref|ZP_03488548.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989]
gi|218216787|gb|EEC90325.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989]
Length = 141
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 4/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +DLG+K G++I D + + A E+L + + ++GL
Sbjct: 3 RIIGLDLGSKTCGVSICDALHITCRALTTVRFESDDYDACLEEVLKLLQENKVKEVVLGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG G R + F + + WDERLTTV+A++IL+ +VSRKKR +
Sbjct: 63 PKHMNGDIGIRGEISCEFAKKL--ESSGIKVHLWDERLTTVAAEKILLQGDVSRKKRKKV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ LDR +
Sbjct: 121 IDQMAAVQILQSFLDRQN 138
>gi|160872335|ref|ZP_02062467.1| conserved hypothetical protein [Rickettsiella grylli]
gi|159121134|gb|EDP46472.1| conserved hypothetical protein [Rickettsiella grylli]
Length = 139
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + + D G K IG+AI A P L KK E+ + + +
Sbjct: 1 MPETKTVIGFDFGLKYIGVAIGQTSPSLAQPLTNLSVKKGNLPWEEIAQLLKMWSPDVIV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P NM+G+E P R F+ + +R +P DERLTTV A+ L + + +
Sbjct: 61 VGVPFNMDGTEQPITREARNFLMELKNR-FEIPVFPVDERLTTVEARSRLFALGGYKALK 119
Query: 133 IQKVDSIAAALILQEVLDR 151
+ +DSIAA LI++ L+
Sbjct: 120 KKSIDSIAAQLIVEIWLEN 138
>gi|219847050|ref|YP_002461483.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485]
gi|254767505|sp|B8GC73|RUVX_CHLAD RecName: Full=Putative Holliday junction resolvase
gi|219541309|gb|ACL23047.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485]
Length = 142
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
Q I +D+G +RIG+AISD R A P + + ++ + + ++GL
Sbjct: 3 EQTILGLDVGERRIGVAISDVEARIAAPLTTIPAHPPERAIAQIARLVAERGVRRVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL M G GP+ + + FV + + P +DERLT+V+A+Q+L ++ V K ++
Sbjct: 63 PLTMRGEHGPQAAAIQRFVDALA-AVLNCPVEMFDERLTSVAAEQMLRNLGVKPAKIKEQ 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA++ILQ+ LD
Sbjct: 122 IDQVAASIILQDYLD 136
>gi|238855617|ref|ZP_04645918.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
gi|260665323|ref|ZP_05866171.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii SJ-7A-US]
gi|282933009|ref|ZP_06338403.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
gi|313473102|ref|ZP_07813586.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153]
gi|238831761|gb|EEQ24097.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
gi|239528661|gb|EEQ67662.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153]
gi|260560827|gb|EEX26803.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii SJ-7A-US]
gi|281302863|gb|EFA95071.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
Length = 148
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+AISD A + + + + ++ F++GL
Sbjct: 2 RLLGLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKLVREYDVTGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--VSRKKRI 133
P NM+GS+G V ++ + + D+ +P + DERLTT+ A ++LI+ RKKR
Sbjct: 62 PKNMDGSDGVSVSRSKNYGKRLEDK-FSLPVAYSDERLTTIEADRVLIEEAEIHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA LILQ LD
Sbjct: 121 EVIDQMAAVLILQNYLD 137
>gi|89074104|ref|ZP_01160603.1| Holliday junction resolvase-like protein [Photobacterium sp. SKA34]
gi|89050040|gb|EAR55566.1| Holliday junction resolvase-like protein [Photobacterium sp. SKA34]
Length = 143
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ ++ + D GTK IG+AI A P L K ++ + +
Sbjct: 1 MSQSRSVLGFDYGTKSIGVAIGQELTGIATPLAALKAKDGIPNWDDIEKILKEWLPDLVV 60
Query: 73 IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+GLPL++ G E + F + + R DERL+TV A+ L + R
Sbjct: 61 VGLPLDLKGKELESITPRAKKFANRLHGR-FGCQVELHDERLSTVEAKAELFERGGYRSL 119
Query: 132 RIQKVDSIAAALILQEVLDR 151
+DS +A +IL+ +R
Sbjct: 120 SKGNIDSQSAVVILESWFER 139
>gi|282896769|ref|ZP_06304775.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9]
gi|281198178|gb|EFA73068.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9]
Length = 158
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G+KR+G+A D A + RK + E+ + + ++G+P +
Sbjct: 13 LGLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDLQEIQGLVEKRRVQILVVGIPYSR 72
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + F + + + +P + DERLT+ A+Q+L+ N S VD
Sbjct: 73 DGSIGEQARRIQKFANRLAK-TLGLPVEYVDERLTSFQAEQMLLAENRSPSYNRGLVDRK 131
Query: 140 AAALILQEVLD 150
AA++ILQ+ LD
Sbjct: 132 AASIILQQWLD 142
>gi|157960959|ref|YP_001500993.1| Holliday junction resolvase-like protein [Shewanella pealeana ATCC
700345]
gi|157845959|gb|ABV86458.1| Holliday junction resolvase YqgF [Shewanella pealeana ATCC 700345]
Length = 141
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + D GTK IG+AI A P + E+ + IT ++GL
Sbjct: 3 DKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPRWEEIGALITEWKPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F N I + V DERLTT A+ L +M + +
Sbjct: 63 PLNMDGTEQEMTQRARKFA-NRISGRFGVKVETQDERLTTADAKARLFEMGGYKALTKGQ 121
Query: 136 VDSIAAALILQEVLDR 151
VD+++A LI++ +
Sbjct: 122 VDAMSAVLIVESYFEN 137
>gi|189461817|ref|ZP_03010602.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136]
gi|189431411|gb|EDV00396.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136]
Length = 138
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SDP + A + Q LL++I E + IIG
Sbjct: 1 MSRILAIDYGRKRTGIAVSDPLQIIASGLTTVPTH---QLMDFLLNYIKQEQVECIIIGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +N + + + F++ + +P DER T+V A Q ++ + +K R K
Sbjct: 58 PKQLNNEDSENMKNIIPFINRLKKILPDMPVQLVDERFTSVLAHQTMLAGGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRIS 153
VD I+A +ILQ L+
Sbjct: 118 ALVDEISATIILQSYLESRR 137
>gi|170077568|ref|YP_001734206.1| Holliday junction resolvase-like protein [Synechococcus sp. PCC
7002]
gi|226695310|sp|B1XJ08|RUVX_SYNP2 RecName: Full=Putative Holliday junction resolvase
gi|169885237|gb|ACA98950.1| YqgFc, likely ribonuclease with RNase H fold; putative Holliday
junction resolvase [Synechococcus sp. PCC 7002]
Length = 144
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KRIG+A D A + R + + +I +I ++GLP M
Sbjct: 7 LGLDIGRKRIGVAGCDGLGLLATALTTIQRTTLEADLAAIAHWIEQRHIQVLVVGLPYAM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + T+ F + + +P + DERLT+V A+ L +++ VD
Sbjct: 67 DGSLGKQAKQTQKFARKLAEA-FGLPIEYVDERLTSVEAENQLKAEKQYDRQQKGLVDQR 125
Query: 140 AAALILQEVLD 150
AA +ILQ+ L+
Sbjct: 126 AAQIILQQWLE 136
>gi|300811591|ref|ZP_07092075.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|313124258|ref|YP_004034517.1| holliday junction resolvase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|300497451|gb|EFK32489.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|312280821|gb|ADQ61540.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|325126221|gb|ADY85551.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|325685731|gb|EGD27809.1| crossover junction endodeoxyribonuclease [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 142
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K IG+A+SDP A + + L + F++GL
Sbjct: 2 RLLGLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEADGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
P NM+G+ G V ++A + ++K +P + DERLTTV++++IL+ + + R++R
Sbjct: 62 PKNMDGTAGRSVSRSKAMGERL-EQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRK 120
Query: 134 QKVDSIAAALILQEVLD 150
+ VD +AA LILQ LD
Sbjct: 121 EVVDQMAAVLILQNYLD 137
>gi|330446902|ref|ZP_08310553.1| uncharacterised family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491093|dbj|GAA05050.1| uncharacterised family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 142
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 2/140 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ ++ + D GTK IG+AI A P + + + +
Sbjct: 1 MSQSRTVLGFDYGTKSIGVAIGQELTGTATPLAAIKANDGVPNWDNIEKLLKEWQPNLVV 60
Query: 73 IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+GLPL++ G E + F N + + DERL+TV A+ L + R
Sbjct: 61 VGLPLDLEGKELETITPRAKKFA-NRVHGRFGCQVELHDERLSTVEARAELFERGGYRSL 119
Query: 132 RIQKVDSIAAALILQEVLDR 151
+DS +A +IL+ +R
Sbjct: 120 SKGNIDSQSAVVILESWFER 139
>gi|218440039|ref|YP_002378368.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 7424]
gi|226725509|sp|B7KBE4|RUVX_CYAP7 RecName: Full=Putative Holliday junction resolvase
gi|218172767|gb|ACK71500.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7424]
Length = 151
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KR+G+A D A + R + + +I ++GLP +M
Sbjct: 8 LGLDVGKKRVGVAGCDGLGLIATGLTTIERTHFIADVEKFKQLVEERDIKVLVVGLPYSM 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+ G + + + + + +P + DERLT+ A++ L VD
Sbjct: 68 NGTLGSQAKQVQNYATRLAKA-LQLPLEYVDERLTSYEAEEQLKAQKRFSTYNKGLVDRQ 126
Query: 140 AAALILQEVLDRISFLE 156
AAA+ILQ+ LD+ L
Sbjct: 127 AAAIILQQWLDQRRSLR 143
>gi|270159103|ref|ZP_06187759.1| putative Holliday junction resolvase [Legionella longbeachae
D-4968]
gi|289166062|ref|YP_003456200.1| Holliday junction resolvase [Legionella longbeachae NSW150]
gi|269987442|gb|EEZ93697.1| putative Holliday junction resolvase [Legionella longbeachae
D-4968]
gi|288859235|emb|CBJ13169.1| Holliday junction resolvase [Legionella longbeachae NSW150]
Length = 139
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ D G KRIG+A+ A P L + + I + A ++G
Sbjct: 2 PSSVYLGFDFGYKRIGVAVGQQLTCSASPLATLSARSGVPNWDAVAKVIAQWSPQALVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+P ++GSE R F + R V +P DERL+TV+A++ L RK +
Sbjct: 62 IPTCIDGSELYTTVPARRFAQELHKRFV-LPVHLVDERLSTVAAREQLFAQGGYRKIKQS 120
Query: 135 KVDSIAAALILQEVL 149
+VDS+AA +IL++ L
Sbjct: 121 EVDSVAACVILEQWL 135
>gi|90023278|ref|YP_529105.1| Holliday junction resolvase-like protein [Saccharophagus degradans
2-40]
gi|146325605|sp|Q21EI6|RUVX_SACD2 RecName: Full=Putative Holliday junction resolvase
gi|89952878|gb|ABD82893.1| Holliday junction resolvase YqgF [Saccharophagus degradans 2-40]
Length = 142
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + + D GTKRIG A+ A+ + K+ + + + I+GL
Sbjct: 3 SQTLLAFDFGTKRIGAAVGQSITCTANILNTIPAKEGIPNWDTIEALLKEWQPDTVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E + F N I + VP +DERLTT A+++ +
Sbjct: 63 PLNMDGTENELCRRAKKFG-NRIHGRFRVPVEMFDERLTTREAKELAWEEGHKGNYANDP 121
Query: 136 VDSIAAALILQEV 148
VDSIAA LIL+
Sbjct: 122 VDSIAARLILESW 134
>gi|116514509|ref|YP_813415.1| Holliday junction resolvase-like protein [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|122274759|sp|Q048Z5|RUVX_LACDB RecName: Full=Putative Holliday junction resolvase
gi|116093824|gb|ABJ58977.1| RNase H-like ribonuclease [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 142
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K IG+A+SDP A + + L + F++GL
Sbjct: 2 RLLGLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
P NM+G+ G V ++A + ++K +P + DERLTTV++++IL+ + + R++R
Sbjct: 62 PKNMDGTAGRSVSRSKAMGERL-EQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRK 120
Query: 134 QKVDSIAAALILQEVLD 150
+ VD +AA LILQ LD
Sbjct: 121 EVVDQMAAVLILQNYLD 137
>gi|229820506|ref|YP_002882032.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333]
gi|229566419|gb|ACQ80270.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333]
Length = 163
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 66/141 (46%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G+ R+G+A DP A P L R+ E+ + ++ +IGLP +
Sbjct: 3 LGVDVGSVRVGVARCDPSGVIATPVTTLARRGKRGGVAEIAGLVREDSAIEVVIGLPRAL 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G EG RA+ + VP DERL+TV+A + + + + ++ + VD
Sbjct: 63 DGHEGSSARQARAYAGQVARAVEPVPVRLVDERLSTVAAHRAMHEAGRAGRRHREVVDQA 122
Query: 140 AAALILQEVLDRISFLESSKG 160
AA +ILQ LD + G
Sbjct: 123 AAVVILQSALDAERATGAPPG 143
>gi|54310237|ref|YP_131257.1| Holliday junction resolvase-like protein [Photobacterium profundum
SS9]
gi|62900980|sp|Q6LMM2|RUVX_PHOPR RecName: Full=Putative Holliday junction resolvase
gi|46914678|emb|CAG21455.1| conserved hypothetical protein [Photobacterium profundum SS9]
Length = 142
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG+AI A+P L K ++ + ++GL
Sbjct: 4 SRSVLAFDYGTKSIGVAIGQELTGTANPLAALKAKDGIPNWDDIGKILKEWQPDLVVVGL 63
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
PLN+ G E + F N I + DERL+TV A+ L + R
Sbjct: 64 PLNLEGGELESITPRAKKFA-NRIHGRFGCVVELHDERLSTVEAKAELFEHGGYRALSKG 122
Query: 135 KVDSIAAALILQEVLDR 151
+DS +A +IL+ +R
Sbjct: 123 NIDSQSAVVILESWFER 139
>gi|254253087|ref|ZP_04946405.1| hypothetical protein BDAG_02337 [Burkholderia dolosa AUO158]
gi|124895696|gb|EAY69576.1| hypothetical protein BDAG_02337 [Burkholderia dolosa AUO158]
Length = 149
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + D G KRIG+AI + R A + + + A ++G
Sbjct: 7 RDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + + + + +P + DER ++V A+ L + NV + R+
Sbjct: 67 LPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVAWVDERYSSVEAEAGLRERNVRGRARVD 125
Query: 135 KVDSIAAALILQEVLDRISFLESS 158
+D+ AA +ILQ+ LD++S E
Sbjct: 126 MLDAEAARVILQQYLDQLSDHEHH 149
>gi|163849371|ref|YP_001637415.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl]
gi|222527368|ref|YP_002571839.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl]
gi|189046090|sp|A9WCR4|RUVX_CHLAA RecName: Full=Putative Holliday junction resolvase
gi|254767506|sp|B9LH40|RUVX_CHLSY RecName: Full=Putative Holliday junction resolvase
gi|163670660|gb|ABY37026.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl]
gi|222451247|gb|ACM55513.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl]
Length = 153
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q I ++D+G +RIG+AISD R A P + + +++ + ++ ++GL
Sbjct: 3 DQIILALDVGERRIGVAISDADARIAAPLTTINAHPPERAIAQIVRLVQERGVSRVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL M G GP+ + F + + P +DERLT+V+A+Q+L ++ + K +
Sbjct: 63 PLTMRGERGPQAEVVQRFADTLSSA-LSCPVEMFDERLTSVAAEQMLRNLGLKPAKIKAQ 121
Query: 136 VDSIAAALILQEVLD 150
+D +AA++ILQ+ LD
Sbjct: 122 IDQVAASIILQDYLD 136
>gi|291541678|emb|CBL14788.1| conserved hypothetical protein TIGR00250 [Ruminococcus bromii
L2-63]
Length = 141
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I S+DLG R G+A+ D A P + K Q ++ + ++GLP N
Sbjct: 3 IMSVDLGKARTGIAVCDKTEFLASPYTVIFEKSPKQLLEKVSNTAKETKAELIVVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSEG + RAF N+ + + V DER TT++A L N KKR VD
Sbjct: 63 MDGSEGESAQNARAFAENLSNE-TGIECVMQDERGTTITAHNFLNTTNTRGKKRKNVVDE 121
Query: 139 IAAALILQEVLDRIS 153
+AA +ILQ+ LD+
Sbjct: 122 VAATIILQDYLDKRK 136
>gi|146293776|ref|YP_001184200.1| Holliday junction resolvase-like protein [Shewanella putrefaciens
CN-32]
gi|145565466|gb|ABP76401.1| Holliday junction resolvase YqgF [Shewanella putrefaciens CN-32]
Length = 141
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + D GTK IG+AI A P L ++ I ++GL
Sbjct: 3 SKTVLGFDFGTKSIGVAIGQEITASATPLLSLKAVDGIPNWDQIGDLIKEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E H R F N I+ K V V DERLTT A+ L ++ + +
Sbjct: 63 PLNMDGTEQDMTHRARKFA-NRINAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQ 121
Query: 136 VDSIAAALILQEVLDR 151
VD+++A LI++ +
Sbjct: 122 VDAVSAVLIIESYFEN 137
>gi|254993596|ref|ZP_05275786.1| Holliday junction resolvase-like protein [Listeria monocytogenes
FSL J2-064]
Length = 124
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 31 LAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPLNMNGSEGPRVH 88
+AISDP A + + + + + + ++GLP NMN + GPR
Sbjct: 1 VAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKNMNNTIGPRAE 60
Query: 89 STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEV 148
S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D +AA +ILQ
Sbjct: 61 SSKIYAEVL-ESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDKLAAVMILQSY 119
Query: 149 LDRIS 153
LD +
Sbjct: 120 LDTTN 124
>gi|89091932|ref|ZP_01164887.1| Holliday junction resolvase-like protein [Oceanospirillum sp.
MED92]
gi|89083667|gb|EAR62884.1| Holliday junction resolvase-like protein [Oceanospirillum sp.
MED92]
Length = 158
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GT+RIG+A A P L+ K E+ I+ A ++G+PLN
Sbjct: 9 LAFDFGTRRIGVASGQSVTGTASPLTPLIAKDGIPNWDEISKLISEWQPDALVVGIPLNA 68
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+ H R F + + +R P DERL+T A++I S R + VD I
Sbjct: 69 DGTISDMAHRARKFANRLHER-YKTPCFLMDERLSTAEAKEIHFASGGSDNFREESVDGI 127
Query: 140 AAALILQEVLD 150
AA LIL+ +
Sbjct: 128 AAQLILESWFN 138
>gi|229593127|ref|YP_002875246.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
SBW25]
gi|312963615|ref|ZP_07778096.1| putative Holliday junction resolvase [Pseudomonas fluorescens WH6]
gi|259495710|sp|C3K3K0|RUVX_PSEFS RecName: Full=Putative Holliday junction resolvase
gi|229364993|emb|CAY53130.1| putative holliday junction resolvase [Pseudomonas fluorescens
SBW25]
gi|311282124|gb|EFQ60724.1| putative Holliday junction resolvase [Pseudomonas fluorescens WH6]
Length = 145
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 2/141 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 6 ILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGIPDWNQVEALIKEWKPDAVVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV-SRKKRIQKVD 137
M+G+ F + + + +PF DERLTT A+ D R VD
Sbjct: 66 MDGTPSDMCLRAEKFARRL-NGRYNIPFYTHDERLTTFEAKGERRDRGGQKGSYRDNPVD 124
Query: 138 SIAAALILQEVLDRISFLESS 158
+IAAAL+LQ LD + L S
Sbjct: 125 AIAAALLLQGWLDENTALFES 145
>gi|284040266|ref|YP_003390196.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74]
gi|283819559|gb|ADB41397.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74]
Length = 142
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G KR G+A++DP + A + +V + L +++ E + AF++GL
Sbjct: 1 MARLLAIDYGMKRTGIAVTDPLQLIASALETVPSHEVLKF---LKAYLVREPVEAFVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P ++G + R FV ++ + +P + DER T+V A Q +I ++K R +K
Sbjct: 58 PKGLDGEDTDNTPRVRKFVTHLQNAFPDIPVYWHDERFTSVMALQAMIAGGSTKKDRREK 117
Query: 136 --VDSIAAALILQEVLDR 151
+D ++AA+ILQ ++R
Sbjct: 118 GNIDKVSAAIILQSYMER 135
>gi|326780492|ref|ZP_08239757.1| Holliday junction resolvase YqgF [Streptomyces cf. griseus
XylebKG-1]
gi|326660825|gb|EGE45671.1| Holliday junction resolvase YqgF [Streptomyces cf. griseus
XylebKG-1]
Length = 154
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 60/146 (41%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + ++G
Sbjct: 2 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPIEVVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F VP DER+TTV+A Q + V KK
Sbjct: 62 LPRSLGGGEGPAAAKVREFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ L+ + G
Sbjct: 122 VIDQAAAVVILQNALESERASGNPPG 147
>gi|241759931|ref|ZP_04758031.1| conserved hypothetical protein [Neisseria flavescens SK114]
gi|241319939|gb|EER56335.1| conserved hypothetical protein [Neisseria flavescens SK114]
Length = 151
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+ D HP + + + + F++G
Sbjct: 5 PKGTVLAFDFGETRIGVVQGDAELGMTHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+E +R F + R +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPTHTDGTEHELTRLSRKFGRRLHGR-FNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQGFFE 139
>gi|32130072|sp|Q9L3I7|RUVX_AERHY RecName: Full=Putative Holliday junction resolvase
gi|7208640|emb|CAB76923.1| hypothetical protein [Aeromonas hydrophila]
Length = 140
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I D GTK IG+AI P + ++ + ++GL
Sbjct: 3 SRSIMGFDYGTKSIGVAIGQELTGTGQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + R F DERLTT A+ L + R
Sbjct: 63 PLNMDGTEQEITVRARKFGNRLHGRFWQA-VEFKDERLTTTDARARLFERGGYRALEKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD ++A LIL+ ++
Sbjct: 122 VDGVSAQLILEAWMEE 137
>gi|269101817|ref|ZP_06154514.1| putative Holliday junction resolvase [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268161715|gb|EEZ40211.1| putative Holliday junction resolvase [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 141
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ ++ + + D GTK IG+AI A P L + + + + +
Sbjct: 1 MSQSRTVLAFDYGTKSIGVAIGQEITGTAQPLKALKARDGIPSWEAIEQILKEWQPDLVV 60
Query: 73 IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+GLPL+M+G E + F + + R DERL+T A+ L + R
Sbjct: 61 VGLPLDMSGHELETITPRAKKFANRLHGR-FGCQVELHDERLSTAEARAELFEFGGYRNL 119
Query: 132 RIQKVDSIAAALILQEVLDR 151
+DS +A +IL+ +
Sbjct: 120 SKGNIDSQSAVVILESWFEN 139
>gi|15603735|ref|NP_246809.1| Holliday junction resolvase-like protein [Pasteurella multocida
subsp. multocida str. Pm70]
gi|32130064|sp|Q9CJX0|RUVX_PASMU RecName: Full=Putative Holliday junction resolvase
gi|12722298|gb|AAK03954.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 140
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D GTK IG A+ A P + + + ++GL
Sbjct: 2 GMTVLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIGKCLAEWQPDRVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F H + R V DERLTT A+ + + K
Sbjct: 62 PLNMDGTEQDLTVRARKFAHRLHGR-FGVAVELQDERLTTTEARAEIFGRGGYKALNKSK 120
Query: 136 VDSIAAALILQEVLDR 151
VD I+A LIL+ +
Sbjct: 121 VDGISACLILESWFEN 136
>gi|291458552|ref|ZP_06597942.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon
078 str. F0262]
gi|291419085|gb|EFE92804.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon
078 str. F0262]
Length = 254
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 79/134 (58%), Gaps = 4/134 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G K IG+A++DP A P + R+ K+ ++ E+ + ++ ++ +IG
Sbjct: 2 RIMGLDYGAKTIGVAVTDPSGLIAQPLRTIFREREGKLRRSLQEIAALVSELSVERIVIG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+ +EG R R F + R + VP + DERLTT++A++IL + V R+++ +
Sbjct: 62 LPLNMDETEGERAEKAREFAALLAKRVL-VPIEWVDERLTTIAAREILDESGVPREEQKR 120
Query: 135 KVDSIAAALILQEV 148
+D +AA LIL+
Sbjct: 121 MIDQVAAQLILETW 134
>gi|156743642|ref|YP_001433771.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM
13941]
gi|156234970|gb|ABU59753.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM
13941]
Length = 146
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 49/134 (36%), Positives = 83/134 (61%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G +RIG+A+SDP R A P + K + S I ++AA ++GLP
Sbjct: 7 GRVMALDVGEQRIGVALSDPTRTLATPLTTIRAKPRATALKRIASLIREHDVAALVVGLP 66
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L M+G GP+ + FV + R + +P F DERLTTV+A++++ID+ + ++R ++
Sbjct: 67 LTMSGDVGPQAALVQQFVEEL-RRAIAIPLTFVDERLTTVAAERMMIDLKLKPEQRKARI 125
Query: 137 DSIAAALILQEVLD 150
D +AA++ILQ+ LD
Sbjct: 126 DEVAASIILQDFLD 139
>gi|313897358|ref|ZP_07830901.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2]
gi|312957728|gb|EFR39353.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2]
Length = 137
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +DLG+K +G+++SD A P + ++ +I + ++GL
Sbjct: 2 RILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYEAACKQVQPYIKEFQVKTAVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG G R + F + + + V WDERLTTV+A++ILI +VSRKKR +
Sbjct: 62 PKHMNGDVGIRGEISLMFKEKL--EALGLEVVLWDERLTTVAAEKILISADVSRKKRKKI 119
Query: 136 VDSIAAALILQEVLDR 151
+D +AA ILQ LD
Sbjct: 120 IDQMAAVQILQSYLDS 135
>gi|167623110|ref|YP_001673404.1| Holliday junction resolvase-like protein [Shewanella halifaxensis
HAW-EB4]
gi|167353132|gb|ABZ75745.1| Holliday junction resolvase YqgF [Shewanella halifaxensis HAW-EB4]
Length = 140
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + D GTK IG+AI A P + E+ + IT ++GL
Sbjct: 3 DKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPKWEEIGALITEWKPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F N I + V DERLTT A+ L +M + +
Sbjct: 63 PLNMDGTEQEMTQRARKFA-NRISGRFGVKVATQDERLTTADAKARLFEMGGYKALTKGQ 121
Query: 136 VDSIAAALILQEVLDR 151
VD+++A LI++ +
Sbjct: 122 VDAMSAVLIVESYFEN 137
>gi|120598152|ref|YP_962726.1| Holliday junction resolvase-like protein [Shewanella sp. W3-18-1]
gi|120558245|gb|ABM24172.1| Holliday junction resolvase YqgF [Shewanella sp. W3-18-1]
gi|319427148|gb|ADV55222.1| Holliday junction resolvase YqgF [Shewanella putrefaciens 200]
Length = 141
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GTK IG+AI A P L ++ I ++GLP
Sbjct: 4 KTVLGFDFGTKSIGVAIGQEITASATPLLSLKAVDGIPNWDQIGDLIKEWQPDLVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E H R F N I+ K V V DERLTT A+ L ++ + +V
Sbjct: 64 LNMDGTEQDMTHRARKFA-NRINAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQV 122
Query: 137 DSIAAALILQEVLDR 151
D+++A LI++ +
Sbjct: 123 DAVSAVLIIESYFEN 137
>gi|315652510|ref|ZP_07905494.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Eubacterium saburreum DSM 3986]
gi|315485226|gb|EFU75624.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Eubacterium saburreum DSM 3986]
Length = 145
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFI 72
+ I +D G+K IG+AISD A P + R K + + ++ + +NI +
Sbjct: 4 KERIMGLDYGSKTIGVAISDSLGLTAQPFETIERSKENKLRRSLAKIAKIVEEKNIKKIV 63
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP+NMNG G RV T FV + ++V VP + DERLTTV A +IL + V ++ R
Sbjct: 64 VGLPVNMNGRRGKRVSLTLEFVEKL-KQRVDVPIIMQDERLTTVEADEILDESGVKKENR 122
Query: 133 IQKVDSIAAALILQEVLDRIS 153
Q +D +AA +IL+E +++ +
Sbjct: 123 KQFIDMVAAGIILREYMEKEN 143
>gi|329120302|ref|ZP_08248970.1| crossover junction endodeoxyribonuclease [Neisseria bacilliformis
ATCC BAA-1200]
gi|327462643|gb|EGF08966.1| crossover junction endodeoxyribonuclease [Neisseria bacilliformis
ATCC BAA-1200]
Length = 153
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 1/146 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G KRIG+A AHP L Q + + I ++G
Sbjct: 8 PRGTCLAFDFGEKRIGVAQGSAETATAHPLSTLSGGSNEQKFAAIAALIREWQPDYLVVG 67
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E R F + +R +P F DER T++ A+ +L + V +K+
Sbjct: 68 LPVHSDGTEHELTRLARKFGRRLHER-FALPVYFADERHTSLLAESLLAEAQVFGRKQKS 126
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+DS+AA +IL + D + + G
Sbjct: 127 VLDSVAAQVILFDFFDSGAVERLNGG 152
>gi|239939939|ref|ZP_04691876.1| hypothetical protein SrosN15_02984 [Streptomyces roseosporus NRRL
15998]
gi|239986423|ref|ZP_04707087.1| hypothetical protein SrosN1_03861 [Streptomyces roseosporus NRRL
11379]
gi|291443370|ref|ZP_06582760.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291346317|gb|EFE73221.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 157
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 60/146 (41%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + I+G
Sbjct: 5 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVEEYEPIEVILG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F VP DER+TTV+A Q + V KK
Sbjct: 65 LPRSLGGGEGPAAAKVRDFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRS 124
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ L+ + G
Sbjct: 125 VIDQAAAVVILQNALESERASGNPPG 150
>gi|126175222|ref|YP_001051371.1| Holliday junction resolvase-like protein [Shewanella baltica OS155]
gi|153001548|ref|YP_001367229.1| Holliday junction resolvase-like protein [Shewanella baltica OS185]
gi|160876284|ref|YP_001555600.1| Holliday junction resolvase-like protein [Shewanella baltica OS195]
gi|217972523|ref|YP_002357274.1| Holliday junction resolvase-like protein [Shewanella baltica OS223]
gi|304410066|ref|ZP_07391685.1| Holliday junction resolvase YqgF [Shewanella baltica OS183]
gi|307302222|ref|ZP_07581980.1| Holliday junction resolvase YqgF [Shewanella baltica BA175]
gi|125998427|gb|ABN62502.1| Holliday junction resolvase YqgF [Shewanella baltica OS155]
gi|151366166|gb|ABS09166.1| Holliday junction resolvase YqgF [Shewanella baltica OS185]
gi|160861806|gb|ABX50340.1| Holliday junction resolvase YqgF [Shewanella baltica OS195]
gi|217497658|gb|ACK45851.1| Holliday junction resolvase YqgF [Shewanella baltica OS223]
gi|304351475|gb|EFM15874.1| Holliday junction resolvase YqgF [Shewanella baltica OS183]
gi|306914260|gb|EFN44681.1| Holliday junction resolvase YqgF [Shewanella baltica BA175]
gi|315268473|gb|ADT95326.1| Holliday junction resolvase YqgF [Shewanella baltica OS678]
Length = 141
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + D GTK IG+AI A P + ++ I ++GL
Sbjct: 3 SKTVLGFDFGTKSIGVAIGQEITASATPLLSIKAVDGIPNWDQIGDLIKEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E H R F N I+ K V DERLTT A+ L ++ + +
Sbjct: 63 PLNMDGTEQDMTHRARKFA-NRINAKFKVKIATQDERLTTTDAKARLFELGGFKALTKGQ 121
Query: 136 VDSIAAALILQEVLDR 151
VD+++A LI++ +
Sbjct: 122 VDAVSAVLIIESYFEN 137
>gi|104774411|ref|YP_619391.1| putative Hollyday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|118597212|sp|Q1G949|RUVX_LACDA RecName: Full=Putative Holliday junction resolvase
gi|103423492|emb|CAI98394.1| Putative Hollyday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 142
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K IG+A+SDP A + + L + F++GL
Sbjct: 2 RLLGLDVGSKTIGVAVSDPLGITAQSVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
P NM+G+ G V ++A + ++K +P + DERLTTV++++IL+ + + R++R
Sbjct: 62 PKNMDGTAGRSVSRSKAMGERL-EQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQRK 120
Query: 134 QKVDSIAAALILQEVLD 150
+ VD +AA LILQ LD
Sbjct: 121 EVVDQMAAVLILQNYLD 137
>gi|290476318|ref|YP_003469222.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004]
gi|289175655|emb|CBJ82458.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004]
Length = 141
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ I + D GT IG AI A K+ + + + + I+G
Sbjct: 2 KNRTIIAFDFGTHSIGTAIGQEITGTARALSAFKAKEGSPSWELIEKLLKEWQPDLIIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E R F + + R V DERLTT+ A+ L D +
Sbjct: 62 LPLNMDGTEQLVTAQARKFANRLHGR-FGVQVELHDERLTTIEARSHLFDHGGYKALDKG 120
Query: 135 KVDSIAAALILQEVLDR 151
KVDS++A +IL+ ++
Sbjct: 121 KVDSVSAVVILESWFEQ 137
>gi|149185993|ref|ZP_01864308.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21]
gi|148830554|gb|EDL48990.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21]
Length = 162
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 56/148 (37%), Positives = 84/148 (56%), Gaps = 16/148 (10%)
Query: 21 SIDLG---------------TKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
++D G TK IG+A D G RFA + R K T +L +T
Sbjct: 12 ALDYGNALPDGGALLGLDLGTKTIGVATCDAGWRFATAGKTIERSKFTTDCGKLREIVTA 71
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+IA ++GLP NM+G+EGPR ++RA+ N+ R +P + WDER +T SA+ +I
Sbjct: 72 RSIAGLVVGLPRNMDGTEGPRAQASRAYAKNLA-RAFGLPVLLWDERWSTSSAESAMIGQ 130
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
++SR KR +K+DS AAA+ILQ +D ++
Sbjct: 131 DMSRAKRAEKIDSHAAAVILQGAIDTLA 158
>gi|253996010|ref|YP_003048074.1| Holliday junction resolvase-like protein [Methylotenera mobilis
JLW8]
gi|253982689|gb|ACT47547.1| Holliday junction resolvase YqgF [Methylotenera mobilis JLW8]
Length = 156
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D G +RIG+A+ + A+P + + + ++ ++GL
Sbjct: 17 SGTVLAFDFGERRIGIAVGEHLLASANPLMTIDNESNEIRFQIITKLVSEWQPRLLVVGL 76
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL+++GSE + F + + + +P DER ++ A Q+L + + + + +
Sbjct: 77 PLSLDGSEHGVTQLCKKFARRL-NGRFNLPVALIDERYSSAEASQLLNEAGIRGRAQKEM 135
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ D+ S
Sbjct: 136 LDQVAAQTILQSYFDQAS 153
>gi|52424316|ref|YP_087453.1| Holliday junction resolvase-like protein [Mannheimia
succiniciproducens MBEL55E]
gi|62900960|sp|Q65VZ2|RUVX_MANSM RecName: Full=Putative Holliday junction resolvase
gi|52306368|gb|AAU36868.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 140
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG A+ A P + + + ++GLPLNM
Sbjct: 8 LAFDFGTKSIGCAVGQSITGTAQALPAFKAQNGIPNWDSIEKCLKEWKPDILVVGLPLNM 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+E R F + + R V DERLTT A+ + + KVD I
Sbjct: 68 DGTEQEFTSRARKFANRLHGR-FGVKVELQDERLTTTEARTEIFQRGGYKALNKSKVDGI 126
Query: 140 AAALILQEVLDRIS 153
+AALIL+ +R S
Sbjct: 127 SAALILESWFERHS 140
>gi|282856373|ref|ZP_06265652.1| RNAse YqgF [Pyramidobacter piscolens W5455]
gi|282585744|gb|EFB91033.1| RNAse YqgF [Pyramidobacter piscolens W5455]
Length = 140
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+GT RIG+A+SDP FA EL + ++GLP+
Sbjct: 3 RIICLDVGTVRIGVAVSDPLGMFAQGIAVWKADGPWLD--ELERAFERYDTGCLLVGLPI 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G+ GP + V + R V +WDER +T +A L++ NVSR+KR Q VD
Sbjct: 61 REDGTIGPSAQHVQDVVKEIQRRFPMVTVRYWDERYSTCTATSYLLEGNVSRRKRKQSVD 120
Query: 138 SIAAALILQEVLD 150
IAAA+ILQ +D
Sbjct: 121 KIAAAVILQSYMD 133
>gi|294139818|ref|YP_003555796.1| putative Holliday junction resolvase [Shewanella violacea DSS12]
gi|293326287|dbj|BAJ01018.1| putative Holliday junction resolvase [Shewanella violacea DSS12]
Length = 140
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D GTK IG+AI A+P + E+ I ++GLPL
Sbjct: 5 TVLGFDYGTKSIGIAIGQSLTGTANPIGSIKAVDGIPKWEEIGMLIEEWQPDMVVVGLPL 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E + F N I + V DERLTT A+ L ++ + +VD
Sbjct: 65 NMDGTEQEITQRAKKFA-NRIKGRFGVKIATQDERLTTADAKARLFELGGYKALTKGQVD 123
Query: 138 SIAAALILQEVLDRI 152
+++A LI++ + +
Sbjct: 124 AMSAVLIIESYFETM 138
>gi|163749444|ref|ZP_02156692.1| Holliday junction resolvase-like protein [Shewanella benthica KT99]
gi|161330853|gb|EDQ01780.1| Holliday junction resolvase-like protein [Shewanella benthica KT99]
Length = 140
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D GTK IG+AI +P + E+ I ++GLPL
Sbjct: 5 TVLGFDYGTKSIGIAIGQSLTGTGNPIGSIKAVDGIPKWEEIGMLIEEWQPDIVVVGLPL 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E + F N I + V DERLTT A+ L ++ + +VD
Sbjct: 65 NMDGTEQEMTQRAKKFA-NRIKGRFGVKIATQDERLTTADAKARLFELGGYKALTKGQVD 123
Query: 138 SIAAALILQEVLDRI 152
+++A LI++ + +
Sbjct: 124 AMSAVLIIESYFENL 138
>gi|330812357|ref|YP_004356819.1| holliday junction resolvase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|32130065|sp|Q9F4I8|RUVX_PSEFL RecName: Full=Putative Holliday junction resolvase
gi|10442817|gb|AAG15556.1| hypothetical protein [Pseudomonas fluorescens]
gi|327380465|gb|AEA71815.1| putative holliday junction resolvase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 145
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 6 LLGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + + + +PF DERLTT A+ + L+ R VD
Sbjct: 66 MDGTPSDMCLRAEKFARRL-NGRYNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVD 124
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD + L
Sbjct: 125 AIAAALLLQGWLDANAAL 142
>gi|68536114|ref|YP_250819.1| putative Hollyday junction resolvase [Corynebacterium jeikeium
K411]
gi|146325565|sp|Q4JVF6|RUVX_CORJK RecName: Full=Putative Holliday junction resolvase
gi|68263713|emb|CAI37201.1| putative Hollyday junction resolvase [Corynebacterium jeikeium
K411]
Length = 155
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 59/137 (43%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+D+GT RIG+AISDP A P + ++ + ++
Sbjct: 12 PGRGRRLGLDVGTVRIGVAISDPDCILATPVETIQATADDADVQRVVEICRDNFVVEIVV 71
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+ + G+ + F + + +P DER++T++A V+ KK
Sbjct: 72 GLPVALRGNHTQSTLNAEEFARLVKEELPDIPVRMVDERMSTMAATHAFHASGVNSKKGR 131
Query: 134 QKVDSIAAALILQEVLD 150
+K+D AA ILQ LD
Sbjct: 132 KKIDQAAAVHILQGWLD 148
>gi|62900951|sp|Q5ZXZ3|RUVX_LEGPH RecName: Full=Putative Holliday junction resolvase
Length = 139
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P D G KRIG+A+ A P + K + IT N A I+G
Sbjct: 2 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ E + R F + R +P DERL+TV A+ L + R+ +
Sbjct: 62 LPTCIDDRELYTTSAARRFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 120
Query: 135 KVDSIAAALILQEVLDR 151
+VDSIAA +IL++ L +
Sbjct: 121 EVDSIAACVILEQWLQQ 137
>gi|54296606|ref|YP_122975.1| Holliday junction resolvase-like protein [Legionella pneumophila
str. Paris]
gi|62900944|sp|Q5X7G8|RUVX_LEGPA RecName: Full=Putative Holliday junction resolvase
gi|53750391|emb|CAH11785.1| hypothetical protein lpp0637 [Legionella pneumophila str. Paris]
Length = 139
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P D G KRIG+A+ A P + K + IT N A I+G
Sbjct: 2 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ E + R F + R +P DERL+TV A+ L + R+ +
Sbjct: 62 LPTCIDDRELYTTSAARHFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 120
Query: 135 KVDSIAAALILQEVLDR 151
+VDSIAA +IL++ L +
Sbjct: 121 EVDSIAACVILEQWLQQ 137
>gi|120403626|ref|YP_953455.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1]
gi|119956444|gb|ABM13449.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1]
Length = 175
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 1/142 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFI 72
+D+GT RIG+A+SDP A P + R K+ T+ L + + + +
Sbjct: 23 PGRGRRLGVDVGTVRIGVAVSDPDAILATPVETVPRDKRGTKHVRRLAALVDEYQVVEVV 82
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP + G + R VP DER TTV+AQ+ L + V + +
Sbjct: 83 VGLPRTLADRAGSSAQDATEVAEVLAGRIAPVPVRLADERFTTVTAQRALREAGVRARGQ 142
Query: 133 IQKVDSIAAALILQEVLDRISF 154
+D AA ILQ LD+
Sbjct: 143 RSVIDQAAAVGILQNWLDQRRA 164
>gi|332288759|ref|YP_004419611.1| Holliday junction resolvase-like protein [Gallibacterium anatis
UMN179]
gi|330431655|gb|AEC16714.1| Holliday junction resolvase-like protein [Gallibacterium anatis
UMN179]
Length = 139
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N + + D GT+ IG A+ + A P + + + ++GL
Sbjct: 3 NLTVIAFDFGTQSIGCAVGQSITQTAQALPAFKAQDGIPNWDAIKKCLDEWKPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + + + V DERLTT A+ + R K
Sbjct: 63 PLNMDGTEQEITQRARKFANRL-NGRFGVKIALQDERLTTTEARAEIFSRGGYRALNKGK 121
Query: 136 VDSIAAALILQEVLDR 151
+DSI+A LIL+ +
Sbjct: 122 IDSISACLILESWFEN 137
>gi|134294911|ref|YP_001118646.1| Holliday junction resolvase-like protein [Burkholderia
vietnamiensis G4]
gi|167012706|sp|A4JC08|RUVX_BURVG RecName: Full=Putative Holliday junction resolvase
gi|134138068|gb|ABO53811.1| Holliday junction resolvase YqgF [Burkholderia vietnamiensis G4]
Length = 149
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 1/150 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + + + D G KRIG+A+ + R A + + +
Sbjct: 1 MSGASARDATFLAFDYGEKRIGVALGNALTRSARALVVIPNLNREHRFKAVGELLAEWRP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLP++ +G+ + F + + + + +P + DER ++V A+ L + NV
Sbjct: 61 DALVVGLPMHPDGTPHDMTQQAKRFGNQL-NGRFGLPVTWVDERYSSVEAEAGLRERNVR 119
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ R +D+ AA +ILQ+ D +S E
Sbjct: 120 GRARTDMLDAEAARVILQQYFDELSDHEHH 149
>gi|332654093|ref|ZP_08419837.1| putative Holliday junction resolvase [Ruminococcaceae bacterium
D16]
gi|332517179|gb|EGJ46784.1| putative Holliday junction resolvase [Ruminococcaceae bacterium
D16]
Length = 140
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +ID G G+AISDP A + +K EL + + ++G P
Sbjct: 2 RVMAIDYGDAHTGVAISDPTGFLAGMTTTIHSRKAEVVLSELARLVKEHQVDQLVMGFPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+EGPR R F + + + V WDER TTV A +IL + + KKR + VD
Sbjct: 62 NMDGTEGPRAQLYRDFAAQVA-QATGLEPVLWDERRTTVDAHRILAEGGKNAKKRKKTVD 120
Query: 138 SIAAALILQEVLD 150
++AA+LIL+ LD
Sbjct: 121 AVAASLILEGYLD 133
>gi|322436322|ref|YP_004218534.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX9]
gi|321164049|gb|ADW69754.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX9]
Length = 143
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D+G RIG+A++DP A P L RK + A LL I + ++G P
Sbjct: 4 GRIMALDVGKARIGIALTDPLGYTAQPLLTLWRKTRNEDARSLLRLIRKHEVTHLVVGNP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQK 135
L+++G P F + +R +P WDERL++V+A +IL + +R K R
Sbjct: 64 LHLSGDLSPFAAKVHEFAEYLRER-TEIPIQLWDERLSSVAANEILDEAGHARGKDRKFI 122
Query: 136 VDSIAAALILQEVL 149
+D +AA LIL+ +
Sbjct: 123 IDQVAAVLILEGWM 136
>gi|318057083|ref|ZP_07975806.1| Holliday junction resolvase-like protein [Streptomyces sp.
SA3_actG]
gi|318077855|ref|ZP_07985187.1| Holliday junction resolvase-like protein [Streptomyces sp.
SA3_actF]
Length = 154
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 61/137 (44%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V + + + ++G
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EG RAF + VP DER+TTV+A Q L V+ KK
Sbjct: 62 LPRSLRGGEGSAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRS 121
Query: 135 KVDSIAAALILQEVLDR 151
+D AA +ILQ L+
Sbjct: 122 VIDQAAAVIILQTALES 138
>gi|113477781|ref|YP_723842.1| Holliday junction resolvase-like protein [Trichodesmium erythraeum
IMS101]
gi|110168829|gb|ABG53369.1| Holliday junction resolvase YqgF [Trichodesmium erythraeum IMS101]
Length = 149
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KR+G+A D A + R + +L + + I+GLP +M
Sbjct: 9 LGLDVGIKRMGVAGCDGTGLIATGIMTIKRASFEKDVFQLQKIVQERQVQVLIVGLPYSM 68
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NGS G + + + + + + +P + DERLT+V A+++L N+S + +D
Sbjct: 69 NGSIGFQAKKVQRYAQRL-SQTLGLPLEYVDERLTSVQAEEMLKAANISPSQNKALIDRK 127
Query: 140 AAALILQEVLDRIS 153
AAALILQ+ LD
Sbjct: 128 AAALILQQWLDERR 141
>gi|163785970|ref|ZP_02180418.1| Holliday junction resolvase-like protein [Flavobacteriales
bacterium ALC-1]
gi|159877830|gb|EDP71886.1| Holliday junction resolvase-like protein [Flavobacteriales
bacterium ALC-1]
Length = 137
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR GLA++D + A + K++ L +++ TE++ F++GL
Sbjct: 1 MGRILAIDYGTKRTGLAVTDEMQIIASGLTTVETKELVPF---LKNYVDTESVEKFVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P M+ + + F+ + ++P DER T+ A Q +ID + +K+R K
Sbjct: 58 PKQMDNTASESEVYIKKFLEILTKAIPHIPIERVDERFTSKMAFQTMIDSGLKKKQRQNK 117
Query: 136 --VDSIAAALILQEVLDRIS 153
+D I+A LILQ L S
Sbjct: 118 ALIDEISATLILQSYLTSQS 137
>gi|307609381|emb|CBW98869.1| hypothetical protein LPW_06571 [Legionella pneumophila 130b]
Length = 142
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P D G KRIG+A+ A P + K + IT N A I+G
Sbjct: 5 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNSIQKVITQWNPQALIVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ E + R F + R +P DERL+TV A+ L + R+ +
Sbjct: 65 LPTCIDDRELYTTSAARRFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123
Query: 135 KVDSIAAALILQEVLDR 151
+VDSIAA +IL++ L +
Sbjct: 124 EVDSIAACVILEQWLQQ 140
>gi|259501302|ref|ZP_05744204.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|302190974|ref|ZP_07267228.1| Holliday junction resolvase-like protein [Lactobacillus iners AB-1]
gi|309803606|ref|ZP_07697698.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
11V1-d]
gi|309805305|ref|ZP_07699356.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
09V1-c]
gi|309805981|ref|ZP_07700007.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
03V1-b]
gi|309807412|ref|ZP_07701375.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
01V1-a]
gi|309809657|ref|ZP_07703513.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
2503V10-D]
gi|312870703|ref|ZP_07730810.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
3008A-a]
gi|312872863|ref|ZP_07732925.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2062A-h1]
gi|312873741|ref|ZP_07733786.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2052A-d]
gi|312875199|ref|ZP_07735212.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2053A-b]
gi|315653053|ref|ZP_07905981.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC
55195]
gi|325911934|ref|ZP_08174337.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
143-D]
gi|325913722|ref|ZP_08176083.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B]
gi|329919583|ref|ZP_08276572.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
1401G]
gi|259167272|gb|EEW51767.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|308164354|gb|EFO66609.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
11V1-d]
gi|308165381|gb|EFO67613.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
09V1-c]
gi|308167584|gb|EFO69737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
03V1-b]
gi|308169334|gb|EFO71389.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
01V1-a]
gi|308170017|gb|EFO72054.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
2503V10-D]
gi|311089306|gb|EFQ47737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2053A-b]
gi|311090739|gb|EFQ49138.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2052A-d]
gi|311091597|gb|EFQ49979.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2062A-h1]
gi|311093715|gb|EFQ52052.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
3008A-a]
gi|315489588|gb|EFU79222.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC
55195]
gi|325476236|gb|EGC79399.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
143-D]
gi|325476922|gb|EGC80073.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B]
gi|328937388|gb|EGG33810.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
1401G]
Length = 143
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A+SD A + + + + ++ F++GL
Sbjct: 2 RLLGLDVGSKTVGVAVSDALGITAQEVETIPIDESKYNFGMRRVKQLVREYEVSGFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKRI 133
P NM+G+ G + + K +P + DERLTT+ A++IL+ + +S R R
Sbjct: 62 PKNMDGTCGESAQRCLDYGERL-KAKFKIPVYYSDERLTTIQAKRILVEEAGISDRVARK 120
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA LILQ L+
Sbjct: 121 KIIDQMAAVLILQNFLE 137
>gi|189485524|ref|YP_001956465.1| putative Holliday junction resolvase RuvX [uncultured Termite group
1 bacterium phylotype Rs-D17]
gi|226695313|sp|B1H0H2|RUVX_UNCTG RecName: Full=Putative Holliday junction resolvase
gi|170287483|dbj|BAG14004.1| putative Holliday junction resolvase RuvX [uncultured Termite group
1 bacterium phylotype Rs-D17]
Length = 140
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 53/134 (39%), Positives = 77/134 (57%), Gaps = 2/134 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ID G KRIG+AI+D R A P + + + AL++L +++ ++GLPL
Sbjct: 3 RIMGIDYGLKRIGIAITDFLRITASPFDTVKNVSLKKNALKILEIAKNRDVSIIVLGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136
NMNG+EG + R F+ I + DERLTTV A+++LI + ++SR+KR
Sbjct: 63 NMNGTEGGMAETVRKFIEK-IKFLSDIEVTTVDERLTTVQAERMLIEEADISREKRKGIK 121
Query: 137 DSIAAALILQEVLD 150
D + AALILQ LD
Sbjct: 122 DKVVAALILQTYLD 135
>gi|311894841|dbj|BAJ27249.1| putative Holliday junction resolvase [Kitasatospora setae KM-6054]
Length = 157
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 3/150 (2%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
K + + I ++D+G RIG+A+ DP A P + +Q L + + +
Sbjct: 4 KVFRRGRRI-AVDVGDARIGVAVCDPDGLIATPVETVPAGGRSQ--ARLKAIVEEYDAVE 60
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLP ++NG EGP R + + V DER+TTV+A L S K
Sbjct: 61 VVVGLPRSLNGKEGPAAAKVREYAGRLAGLLYPVGVRLVDERMTTVTAAAGLRASGRSSK 120
Query: 131 KRIQKVDSIAAALILQEVLDRISFLESSKG 160
K +D AA +ILQ L+ + G
Sbjct: 121 KGRSVIDQAAAVVILQSALETERVSGRAPG 150
>gi|118595162|ref|ZP_01552509.1| Holliday junction resolvase-like protein [Methylophilales bacterium
HTCC2181]
gi|118440940|gb|EAV47567.1| Holliday junction resolvase-like protein [Methylophilales bacterium
HTCC2181]
Length = 148
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+++PN + + D G K+IG+AI + + AHP + + K ++ + + +
Sbjct: 8 SNIRPNTNVIAFDFGEKKIGVAIGNSITKTAHPLETIRKVKKSERIEIIENLLNEWEPGI 67
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLPLN +G+E + F + +R VP V DER T+V A+ +L + S K
Sbjct: 68 VVVGLPLNEDGTESRLTLLAQNFAKKIKNR-FQVPIVMVDERYTSVEAKILLNENVKSIK 126
Query: 131 KRIQKVDSIAAALILQEVLDR 151
K Q +D +AA +IL DR
Sbjct: 127 KGNQVIDQVAAQIILGSYFDR 147
>gi|149280102|ref|ZP_01886226.1| Holliday junction resolvase-like protein [Pedobacter sp. BAL39]
gi|149229116|gb|EDM34511.1| Holliday junction resolvase-like protein [Pedobacter sp. BAL39]
Length = 138
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 5/136 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I + D GTKR+G+A++DP + A + K + + L ++ TE + AF+IG P
Sbjct: 3 RILAFDYGTKRVGIAVTDPLQIIATGLDNVHPKDIIEY---LKKYLLTEQVEAFVIGDPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
M+GS + F + +P + DER T+ A Q ++ + ++ R K
Sbjct: 60 QMDGSPSESAQHIKGFARTLKKTFPDIPQFWVDERFTSKLAHQTILQSGLKKQDRKDKSR 119
Query: 136 VDSIAAALILQEVLDR 151
VD+IAA +ILQ +++
Sbjct: 120 VDTIAATIILQYFMEQ 135
>gi|52840824|ref|YP_094623.1| Holliday junction resolvase-like protein [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|296106167|ref|YP_003617867.1| putative ribonuclease [Legionella pneumophila 2300/99 Alcoy]
gi|52627935|gb|AAU26676.1| YqgF [Legionella pneumophila subsp. pneumophila str. Philadelphia
1]
gi|295648068|gb|ADG23915.1| putative ribonuclease [Legionella pneumophila 2300/99 Alcoy]
Length = 142
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P D G KRIG+A+ A P + K + IT N A I+G
Sbjct: 5 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ E + R F + R +P DERL+TV A+ L + R+ +
Sbjct: 65 LPTCIDDRELYTTSAARRFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123
Query: 135 KVDSIAAALILQEVLDR 151
+VDSIAA +IL++ L +
Sbjct: 124 EVDSIAACVILEQWLQQ 140
>gi|54293569|ref|YP_125984.1| hypothetical protein lpl0621 [Legionella pneumophila str. Lens]
gi|62900943|sp|Q5WYW4|RUVX_LEGPL RecName: Full=Putative Holliday junction resolvase
gi|53753401|emb|CAH14854.1| hypothetical protein lpl0621 [Legionella pneumophila str. Lens]
Length = 139
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P D G KRIG+A+ A P + K + IT N A I+G
Sbjct: 2 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ E + R F + + +P DERL+TV A+ L + R+ +
Sbjct: 62 LPTCIDDRELYTTSAARRFAKQLHKQ-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 120
Query: 135 KVDSIAAALILQEVLDR 151
+VDSIAA +IL++ L +
Sbjct: 121 EVDSIAACVILEQWLQQ 137
>gi|330719458|gb|EGG98088.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC2047]
Length = 142
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 4/134 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I + D GT RIG+A A P P L + +L I AF++G+
Sbjct: 6 QHRILAFDFGTHRIGMAFGQALTGTASPLPILPARDGIPDWQKLGKIIEEWQPDAFVVGV 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+EGP R F + + R + P DERL+T+ A++ L + N K
Sbjct: 66 PLNMDGTEGPITPRARKFANRLHGR-FHKPIYTMDERLSTIEAKEKLAEFN---NKNSIG 121
Query: 136 VDSIAAALILQEVL 149
+DS+AA LIL+
Sbjct: 122 LDSMAATLILESWF 135
>gi|295112760|emb|CBL31397.1| conserved hypothetical protein TIGR00250 [Enterococcus sp. 7L76]
gi|323480436|gb|ADX79875.1| conserved hypothetical protein [Enterococcus faecalis 62]
Length = 137
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G++ +G+A+SD A + ++ L + + F++GLP
Sbjct: 1 MGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN S GPR ++ A+ I +P + DERLTTV A++ L++ + SR KR + +
Sbjct: 61 NMNNSIGPRAEASMAYGDK-IQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKVI 119
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD S
Sbjct: 120 DKLAAVMILQNYLDAHS 136
>gi|254995134|ref|ZP_05277324.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Mississippi]
gi|255003304|ref|ZP_05278268.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Puerto Rico]
gi|255004430|ref|ZP_05279231.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Virginia]
gi|62900915|sp|Q5PAA6|RUVX_ANAMM RecName: Full=Putative Holliday junction resolvase
Length = 157
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IE +L ++ I +D G K+ GLA+SD A P +R+ V Q EL
Sbjct: 1 MLCDSIESFFGALGADRRILGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELN 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + E I A ++GLPL ++G EG R+FV +I + V DER TT A +
Sbjct: 61 AILKREGICAAVVGLPLQLDGMEGEMCAVVRSFVQKLIKKS-GVYVYLHDERFTTAMASR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + RK + D I+AALILQ+VLD
Sbjct: 120 TTESLGLRRKASQKVDDKISAALILQQVLD 149
>gi|161506985|ref|YP_001576939.1| putative DNA recombination protein [Lactobacillus helveticus DPC
4571]
gi|172048187|sp|A8YTJ2|RUVX_LACH4 RecName: Full=Putative Holliday junction resolvase
gi|160347974|gb|ABX26648.1| putative DNA recombination protein [Lactobacillus helveticus DPC
4571]
Length = 142
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+++SD A + + L + + F++GL
Sbjct: 2 RLLGLDIGSKTVGVSVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKRI 133
P NM+G+ G V ++A+ + + K +P + DERLTT+ ++++L++ + RKKR
Sbjct: 62 PKNMDGTSGASVARSKAYGKRL-EEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 121 QVIDQMAAVLILQNYLD 137
>gi|260893291|ref|YP_003239388.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4]
gi|260865432|gb|ACX52538.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4]
Length = 146
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D+G K IG+A+SDP A L R + + +L + +IGLP
Sbjct: 2 RILALDVGDKTIGVAVSDPFGLTAQGLKVLHRGEEAEDVQHVLELARRYEVEEVVIGLPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ G GP+ F + + + ++WDER TT A+++L+ +VSRKKR + D
Sbjct: 62 TLAGEIGPQAQKVLRFGELLAQQ--GLKIIYWDERFTTKEAEKVLLAADVSRKKRRRVKD 119
Query: 138 SIAAALILQEVLDRIS 153
+AA L+L+ L++
Sbjct: 120 ILAAVLLLEAYLEKRR 135
>gi|227538919|ref|ZP_03968968.1| Holliday junction resolvase family protein [Sphingobacterium
spiritivorum ATCC 33300]
gi|227241122|gb|EEI91137.1| Holliday junction resolvase family protein [Sphingobacterium
spiritivorum ATCC 33300]
Length = 138
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 5/140 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTKRIG+A++DP + A+ + ++ L +++ TE + F++G P
Sbjct: 2 RLMAFDYGTKRIGIAVTDPLQIVANALTTVHPNEIFDF---LKNYLQTEQVETFVVGKPR 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135
M+GS+ F+ + + +P DER T+ A ++ + + KR
Sbjct: 59 QMDGSDSESASHVVGFIRLLKKQFPTIPVAEVDERFTSKMASAVIAQSGMKKGKRQQKGL 118
Query: 136 VDSIAAALILQEVLDRISFL 155
VD+I+A +ILQ +D SFL
Sbjct: 119 VDTISATIILQSYMDSRSFL 138
>gi|119899749|ref|YP_934962.1| Holliday junction resolvase-like protein [Azoarcus sp. BH72]
gi|167012690|sp|A1KB70|RUVX_AZOSB RecName: Full=Putative Holliday junction resolvase
gi|119672162|emb|CAL96076.1| putative Hollyday junction resolvase [Azoarcus sp. BH72]
Length = 156
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L + + D G RIG+A+ + R A+P + + + + A +
Sbjct: 12 LPARGTLLAFDFGLARIGVAVGELETRHANPLLTVHEEANAARFAIIARLLDEWKPVALV 71
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KK 131
+GLP +++G E R F + + R +P DERL++ +A++ L D +S +
Sbjct: 72 VGLPGHLDGREHELAPRCRRFANQLHGR-FGIPVHLVDERLSSAAAERQLHDAGLSGWQA 130
Query: 132 RIQKVDSIAAALILQEVLD 150
R +D++AA LILQ LD
Sbjct: 131 RKPVLDAVAAQLILQHFLD 149
>gi|90580288|ref|ZP_01236095.1| Holliday junction resolvase-like protein [Vibrio angustum S14]
gi|90438590|gb|EAS63774.1| Holliday junction resolvase-like protein [Vibrio angustum S14]
Length = 143
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ ++ + D GTK IG+AI A P L K ++ + +
Sbjct: 1 MSQSRSVLGFDYGTKSIGVAIGQELTGTATPLAALKAKDGIPNWDDIEKILKEWLPDLVV 60
Query: 73 IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+GLPL++ G E + F + + R DERL+TV A+ L + R
Sbjct: 61 VGLPLDLEGKELESITPRAKKFANRLHGR-FGYQVELHDERLSTVEAKAELFERGGYRSL 119
Query: 132 RIQKVDSIAAALILQEVLDR 151
+DS +A +IL+ +R
Sbjct: 120 SKGNIDSQSAVVILESWFER 139
>gi|190410280|ref|YP_001965781.1| yqgF [Klebsiella pneumoniae]
gi|17046115|dbj|BAB72159.1| hypothetical protein [Escherichia coli]
gi|146151073|gb|ABQ02839.1| yqgF [Klebsiella pneumoniae]
gi|225730204|gb|ACO24916.1| hypothetical protein [Enterobacter aerogenes]
gi|225730218|gb|ACO24929.1| hypothetical protein [Escherichia coli]
Length = 140
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I D GTK IG+AI A P L E+ + ++GL
Sbjct: 3 SRSIMGFDYGTKSIGVAIGQEITGSARPLRSLKANDGIPNWDEIEKLLKEWQPDLLVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G++ R F + + R P F DERLTT A+ L + +
Sbjct: 63 PLNMDGTDQEITVRARKFGNRLHGR-FGKPVEFKDERLTTTDARARLFERGGYKALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD ++A LI++ ++
Sbjct: 122 VDGVSAQLIVEAWMEE 137
>gi|85711782|ref|ZP_01042838.1| Holliday junction resolvase-like protein [Idiomarina baltica OS145]
gi|85694397|gb|EAQ32339.1| Holliday junction resolvase-like protein [Idiomarina baltica OS145]
Length = 135
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D GTK IG+A+ A L + + + ++GLPL
Sbjct: 2 TVVGFDFGTKSIGVAVGQSITGTASILKALKAQDGIPNWSTVEQLLKEWQPERVVVGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E P + F N I + VP VF DERLT+ +A++ L + + R KVD
Sbjct: 62 NMDGTEQPLTQRAKKFG-NRIHGRFNVPVVFQDERLTSTAAREALFERDGYRGLEKGKVD 120
Query: 138 SIAAALILQEVL 149
S AA LI+++ L
Sbjct: 121 SAAALLIVEDYL 132
>gi|316933654|ref|YP_004108636.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris DX-1]
gi|315601368|gb|ADU43903.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris DX-1]
Length = 160
Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 60/134 (44%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Query: 26 TKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP 85
TK IG+A SDP RR A + RK T A LL+ F++GLPLNM+GSEGP
Sbjct: 28 TKTIGVAASDPDRRLATGVETIARKAFTADAARLLALAAERTACGFVLGLPLNMDGSEGP 87
Query: 86 RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALIL 145
R STRAF N+ +P WDERL+T + ++ LI +VSR KR + +D AA IL
Sbjct: 88 RAQSTRAFARNLAK-LTELPIGLWDERLSTAAVERELIANDVSRAKRAKVIDEHAAIFIL 146
Query: 146 QEVLDRISFLESSK 159
Q LDR++ L ++
Sbjct: 147 QGALDRLAALRRAE 160
>gi|332878466|ref|ZP_08446187.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683561|gb|EGJ56437.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 144
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G KR G+A++DP + A+ + V ++S++ E++ ++GL
Sbjct: 1 MGRVLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDF---IVSYVRQEHVERIVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NG + + +FV + +R +P F+DER T+V A Q ++ + +K R K
Sbjct: 58 PKQANGEDSENMGRINSFVRCLHERLPEIPVEFFDERYTSVLAHQAMLQGGLRKKARQNK 117
Query: 136 --VDSIAAALILQEVLDRISFLESS 158
VD I+A +ILQ ++ L+ +
Sbjct: 118 ALVDEISATIILQGWMESRMMLKKN 142
>gi|242278598|ref|YP_002990727.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM
2638]
gi|259495701|sp|C6C125|RUVX_DESAD RecName: Full=Putative Holliday junction resolvase
gi|242121492|gb|ACS79188.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM
2638]
Length = 135
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ SID GTKR+GLAISDP + FA P + R ELL I E + +IGLPL
Sbjct: 2 KVLSIDFGTKRVGLAISDPDQIFAFPYKVMERTTRDAMFSELLEIIENEKVGDIVIGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+++G + R F ++ +R+V +P DERL++++A+ L + + +KR + +D
Sbjct: 62 SLDGEDTLTTRQVRNFAASL-ERRVDLPIHLVDERLSSIAAEDELKEAGLWDRKRKKNLD 120
Query: 138 SIAAALILQEVLDR 151
S AA +IL+ L R
Sbjct: 121 SQAAKIILETWLAR 134
>gi|220907921|ref|YP_002483232.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 7425]
gi|219864532|gb|ACL44871.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7425]
Length = 150
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG KRIG+A D A L R+ + +L + + ++GLP M
Sbjct: 5 LGLDLGEKRIGIAGCDRTGLIATGLTTLERRSFAEDMQQLDQIVQERQVEVLVVGLPYRM 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + + + + +P + DERLT+ A+ +L + +D
Sbjct: 65 DGSIGFQARRVQRLAQRIA-QALNLPVEYVDERLTSFEAEAMLRSQGRFSNRDKPLIDRK 123
Query: 140 AAALILQEVLDRISFLE 156
AAALILQ+ L++ +
Sbjct: 124 AAALILQQWLEQRRLSQ 140
>gi|154500404|ref|ZP_02038442.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC
29799]
gi|150270909|gb|EDM98192.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC
29799]
Length = 139
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +ID G R G+AISDP A + +K A E+ + + ++G P
Sbjct: 2 RIMAIDYGDARTGIAISDPTGLLAGYTTVIHSRKSEVVAEEIARLVKEHGVEELVMGFPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+EGPR RAF + + + V WDER TTV A IL K+ + VD
Sbjct: 62 NMDGTEGPRAELYRAFAQQ-VGQVTGLTPVLWDERRTTVEAHNILHASGKRMKQHKKTVD 120
Query: 138 SIAAALILQEVLDRIS 153
++AA LIL+ L R
Sbjct: 121 AVAATLILEGYLTRRR 136
>gi|294102018|ref|YP_003553876.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM
12261]
gi|293616998|gb|ADE57152.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM
12261]
Length = 138
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 57/138 (41%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D+G KRIG+A+SDP FA F+ K + L+L + + N+ +IG
Sbjct: 1 MGRILALDIGEKRIGMAVSDPLGCFAQGVGFIPMNK--EWLLKLDESLISLNVEMLLIGN 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL NG+ GP + + R ++ V WDER TT AQQ+L++ NVSRKKR +K
Sbjct: 59 PLRTNGTAGPETDKIKNIAAELKIRYPHISIVLWDERFTTSIAQQVLLEGNVSRKKRKEK 118
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AAALILQ LD
Sbjct: 119 VDQLAAALILQNYLDHTR 136
>gi|290961839|ref|YP_003493021.1| Holliday junction resolvase subunit [Streptomyces scabiei 87.22]
gi|260651365|emb|CBG74487.1| putative holliday junction resolvase subunit [Streptomyces scabiei
87.22]
Length = 154
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 62/146 (42%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + I+G
Sbjct: 2 RRGRRLALDVGDARIGVASCDPDGILATPVETVPGRDVPAAQRRLRQLVDEYVPMEVIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F + VP DER+TTV+A Q L V KK
Sbjct: 62 LPRSLKGGEGPAAVKVRGFAQELARMIAPVPVRLLDERMTTVTAGQGLRASGVKSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ+ L+ + G
Sbjct: 122 VIDQAAAVIILQQALESERMSGKAPG 147
>gi|326796931|ref|YP_004314751.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1]
gi|326547695|gb|ADZ92915.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1]
Length = 159
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GT RIG+AI A P L + + + F++GLP
Sbjct: 22 KTVLGFDFGTTRIGVAIGQNVTMSARPLSPLKANEGIPNWDTIAKLVAEWEPDCFVVGLP 81
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE R F + R P+ DERL++ A+ +I R + V
Sbjct: 82 LNMDGSENEMCQRARKFAKRLHGR-YNRPYHMMDERLSSYDAKGQVIAQGGHRNFKENSV 140
Query: 137 DSIAAALILQEVL 149
D +AA LI++
Sbjct: 141 DGLAAQLIIETWF 153
>gi|146305439|ref|YP_001185904.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
ymp]
gi|145573640|gb|ABP83172.1| Holliday junction resolvase YqgF [Pseudomonas mendocina ymp]
Length = 144
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
KP + + D GTK+IG+A+ A L + + + I A ++
Sbjct: 4 KPVRLLLGFDYGTKQIGVAVGQVITGQARELCVLKAQNGVPDWNRVEALIKEWQPDAVVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKR 132
GLPLNM+G+ F + + +P DERLTT A+ Q L + S R
Sbjct: 64 GLPLNMDGTPSEMSARAEKFARRL-NGHFNLPAYTHDERLTTFEAKGQRLRE-GQSGGYR 121
Query: 133 IQKVDSIAAALILQEVLDR 151
+ VD+IAAAL+LQ L+
Sbjct: 122 ERPVDAIAAALLLQGWLEE 140
>gi|260578809|ref|ZP_05846716.1| Holliday junction resolvase [Corynebacterium jeikeium ATCC 43734]
gi|258603107|gb|EEW16377.1| Holliday junction resolvase [Corynebacterium jeikeium ATCC 43734]
Length = 155
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 59/137 (43%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+D+GT RIG+AISDP A P + + + ++
Sbjct: 12 PGRGRRLGLDVGTVRIGVAISDPDCILATPVETVQATADDADVQRVAEICRENFVVEIVV 71
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+ + G+ + F + + +P DER++T++A Q V+ KK
Sbjct: 72 GLPVALRGNHTQSTLNAEEFARLVKEELPDIPLRMVDERMSTMAATQAFHASGVNSKKGR 131
Query: 134 QKVDSIAAALILQEVLD 150
+K+D AA ILQ LD
Sbjct: 132 KKIDQAAAVHILQGWLD 148
>gi|56416955|ref|YP_154029.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries]
gi|222475321|ref|YP_002563738.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Florida]
gi|56388187|gb|AAV86774.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries]
gi|222419459|gb|ACM49482.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Florida]
Length = 164
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IE +L ++ I +D G K+ GLA+SD A P +R+ V Q EL
Sbjct: 8 MLCDSIESFFGALGADRRILGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELN 67
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + E I A ++GLPL ++G EG R+FV +I + V DER TT A +
Sbjct: 68 AILKREGICAAVVGLPLQLDGMEGEMCAVVRSFVQKLIKKS-GVYVYLHDERFTTAMASR 126
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + RK + D I+AALILQ+VLD
Sbjct: 127 TTESLGLRRKASQKVDDKISAALILQQVLD 156
>gi|330501372|ref|YP_004378241.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
NK-01]
gi|328915658|gb|AEB56489.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
NK-01]
Length = 144
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
KP + + D GTK+IG+A+ A L + + + I A ++
Sbjct: 4 KPLRLLLGFDYGTKQIGVAVGQVITGQARELCVLKAQNGVPDWSRVEALIKEWQPDAVVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKR 132
GLPLNM+G+ F + + + +P DERLTT A+ Q L + S R
Sbjct: 64 GLPLNMDGTPSEMSARAEKFARRL-NGRFNLPAYTHDERLTTFEAKGQRLRE-GQSGGYR 121
Query: 133 IQKVDSIAAALILQEVLDR 151
+ VD+IAAAL+LQ L+
Sbjct: 122 ERPVDAIAAALLLQGWLEE 140
>gi|90412043|ref|ZP_01220050.1| Holliday junction resolvase-like protein [Photobacterium profundum
3TCK]
gi|90327021|gb|EAS43400.1| Holliday junction resolvase-like protein [Photobacterium profundum
3TCK]
Length = 142
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG+AI A+P L K ++ + ++GL
Sbjct: 4 SRSVLAFDYGTKSIGVAIGQELTGTANPLAALKAKDGIPNWDDIGKILKEWQPDLVVVGL 63
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
PL++ G E + F N I + DERL+TV A+ L + R
Sbjct: 64 PLDLEGGELESITPRAKKFA-NRIHGRFGCVVELHDERLSTVEAKADLFERGGYRSLSKG 122
Query: 135 KVDSIAAALILQEVLDR 151
+DS +A +IL+ +R
Sbjct: 123 NIDSQSAVVILESWFER 139
>gi|330995382|ref|ZP_08319292.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT
11841]
gi|329575877|gb|EGG57401.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT
11841]
Length = 141
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G KR G+A++DP + A+ + V ++S++ E++ ++G
Sbjct: 1 MGRVLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDF---IVSYVQQEHVERIVVGQ 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NG + + +FV + +R +P F+DER T+V A Q ++ + +K R K
Sbjct: 58 PKQANGEDSENMGRINSFVRRLHERLPEIPVEFFDERYTSVLAHQAMLQGGLRKKARQNK 117
Query: 136 --VDSIAAALILQEVLDRISFLE 156
VD I+A +ILQ ++ L+
Sbjct: 118 ALVDEISATIILQGWMESRMMLK 140
>gi|298368767|ref|ZP_06980085.1| Holliday junction resolvase [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282770|gb|EFI24257.1| Holliday junction resolvase [Neisseria sp. oral taxon 014 str.
F0314]
Length = 153
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + F++G
Sbjct: 5 PAGTTLAFDFGEVRIGVAQGDAEVGLSHPLTTVTGGSNEVKFEAVAKLVDEWQPVQFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E +R F + R +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPVHADGTEHELTRLSRKFGRRLQGR-FKLPVYWVDERMSSLYAESLLAEAQVFGRKQKA 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQGFFE 139
>gi|225873782|ref|YP_002755241.1| conserved hypothetical protein TIGR00250 [Acidobacterium capsulatum
ATCC 51196]
gi|225794196|gb|ACO34286.1| conserved hypothetical protein TIGR00250 [Acidobacterium capsulatum
ATCC 51196]
Length = 146
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G +R+G+A+SD A P LVR Q L + ++G PL M
Sbjct: 1 MALDVGDRRVGVAVSDELGLTAQPVLTLVRTNRKQDMKSLGRLLRRFGCTEVVVGNPLYM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G P+ +AF + + +P WDERLTT A + L + + VD +
Sbjct: 61 SGDISPQALKAQAFAA-WVREEFGLPVHLWDERLTTTEAHRHLHAAGRPGSEHREVVDQV 119
Query: 140 AAALILQEVL 149
AA LIL L
Sbjct: 120 AAVLILDGFL 129
>gi|126664528|ref|ZP_01735512.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17]
gi|126630854|gb|EBA01468.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17]
Length = 140
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GT+RIG+A+ P + + T +L + ++GL
Sbjct: 6 QRRVMAFDFGTRRIGVAVGQEMLGRGEPLTMIAARDGTPDWTQLEKLLHEWRPDLVVVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + R +V DERLT+ A+ ++ SR R
Sbjct: 66 PLNMDDSENEMCVRARKFGKRLHGR-FHVTVEMVDERLTSYQAKGEVMAAGGSRNYRRDG 124
Query: 136 VDSIAAALILQEVLDR 151
+D AA LIL+ ++
Sbjct: 125 IDDRAAVLILETWFNQ 140
>gi|317131029|ref|YP_004090343.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3]
gi|315469008|gb|ADU25612.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3]
Length = 143
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D G R G+A+SDP A P + TQ + + ++GLP
Sbjct: 2 KVMAVDYGDARTGIALSDPSGFLASPVCVIHETDETQILAKTAEQVARTGAERVVVGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR +AF + + VP + +DER TT++AQ N KKR +D
Sbjct: 62 NMNGTLGPRAEKAQAFAKAL-EAACGVPVLLFDERRTTLTAQVYFNATNTRGKKRKNSID 120
Query: 138 SIAAALILQEVLDRISFLESSK 159
+ AA +ILQ+ LD + + K
Sbjct: 121 AAAATIILQDYLDSVRNTPNGK 142
>gi|148360766|ref|YP_001251973.1| putative ribonuclease [Legionella pneumophila str. Corby]
gi|148282539|gb|ABQ56627.1| putative ribonuclease with RNase H fold; smart00732 [Legionella
pneumophila str. Corby]
Length = 142
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P D G KRIG+A+ A P + K + IT N A I+G
Sbjct: 5 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ E + R F + R +P DERL+TV A+ L + R+ +
Sbjct: 65 LPTCIDDRELYTTSAARCFAKQLHKR-FSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123
Query: 135 KVDSIAAALILQEVLDR 151
+VDSIAA +IL++ L +
Sbjct: 124 EVDSIAACVILEQWLQQ 140
>gi|300770445|ref|ZP_07080324.1| Holliday junction resolvase family protein [Sphingobacterium
spiritivorum ATCC 33861]
gi|300762921|gb|EFK59738.1| Holliday junction resolvase family protein [Sphingobacterium
spiritivorum ATCC 33861]
Length = 138
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 5/140 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTKRIG+A++DP + A+ + ++ L +++ TE + F++G P
Sbjct: 2 RLMAFDYGTKRIGIAVTDPLQIVANALTTVHPDEIVDF---LKNYLQTEQVETFVVGKPR 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135
M+GS+ F+ + + +P DER T+ A ++ + + KR
Sbjct: 59 QMDGSDSESASHVIGFIRLLKKQFPAIPVAEVDERFTSKMASAVIAQSGMKKGKRQQKGL 118
Query: 136 VDSIAAALILQEVLDRISFL 155
VD+I+A +ILQ +D SFL
Sbjct: 119 VDTISATIILQSYMDSRSFL 138
>gi|258511991|ref|YP_003185425.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478717|gb|ACV59036.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 144
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G +RIG+A+SDP A P + R+ Q A E+ E + ++G PL+M
Sbjct: 1 MAIDFGERRIGVALSDPMGLIAQPYGVIERQSDRQAADEVADLARREEVGRIVVGRPLHM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G F M+ + +P +DERLTTVSA++ILI+ NV R++R VD+
Sbjct: 61 SGQPSEMTSRAEKFA-RMLAARTGLPVDLYDERLTTVSAERILIEQNVRRRERRATVDAA 119
Query: 140 AAALILQEVL 149
AA ++L++ L
Sbjct: 120 AAQVLLEDYL 129
>gi|313203125|ref|YP_004041782.1| holliday junction resolvase yqgf [Paludibacter propionicigenes WB4]
gi|312442441|gb|ADQ78797.1| Holliday junction resolvase YqgF [Paludibacter propionicigenes WB4]
Length = 139
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR+GLA++D A+ + +V L +I E + F+IGL
Sbjct: 1 MGRILAIDYGQKRVGLAVTDMLHISANGLDTVSAHEV---LTYLEKYIAKEPVEKFVIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MNG + + R F + + + V+ DER T+V A + +++ + +K R
Sbjct: 58 PKQMNGQDSDSMQYIRPFATALQRKFPEIELVYVDERFTSVLAHKAMLEGGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISFL 155
+ VD I+A +ILQ L+ I L
Sbjct: 118 ELVDKISATIILQSYLESIYNL 139
>gi|312880062|ref|ZP_07739862.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260]
gi|310783353|gb|EFQ23751.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260]
Length = 144
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 2/135 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++DLGT R+G+A+SDP RRFA P L ++ + + T + ++GL
Sbjct: 3 EGRVLALDLGTVRVGVALSDPTRRFAQPLDVLPAQENW--IQRVRELVVTHQVTLVLVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +G+ GP V R + + VP F+DER TT AQQ L+ +VSRK R Q+
Sbjct: 61 PTRTDGTAGPEVERVRGWTEELRQGIPQVPIQFYDERFTTRIAQQALLAGDVSRKGRKQR 120
Query: 136 VDSIAAALILQEVLD 150
VD +AAA++LQ LD
Sbjct: 121 VDKVAAAVLLQGFLD 135
>gi|254495884|ref|ZP_05108793.1| YqgF [Legionella drancourtii LLAP12]
gi|254354866|gb|EET13492.1| YqgF [Legionella drancourtii LLAP12]
Length = 138
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ D G KRIG+A+ A P + + + + A I+G
Sbjct: 2 PDGVYLGFDFGYKRIGVAVGQRLTCSASPLATISAQTGVPDWTVVAKVVAQWTPQALIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+P ++G E + R F + R +P DERLTTV A+ L RK +
Sbjct: 62 IPTCIDGREQYTTSAARRFAKELRKRFT-LPVHLVDERLTTVEARGHLFAQGGYRKIKQT 120
Query: 135 KVDSIAAALILQEVL 149
+VDSIAA +IL++ L
Sbjct: 121 EVDSIAACVILEQWL 135
>gi|16272260|ref|NP_438472.1| Holliday junction resolvase-like protein [Haemophilus influenzae Rd
KW20]
gi|68248907|ref|YP_248019.1| Holliday junction resolvase-like protein [Haemophilus influenzae
86-028NP]
gi|145628645|ref|ZP_01784445.1| Holliday junction resolvase-like protein [Haemophilus influenzae
22.1-21]
gi|145634695|ref|ZP_01790404.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittAA]
gi|145636560|ref|ZP_01792228.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittHH]
gi|145638789|ref|ZP_01794398.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittII]
gi|145640245|ref|ZP_01795829.1| Holliday junction resolvase-like protein [Haemophilus influenzae
R3021]
gi|148827459|ref|YP_001292212.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittGG]
gi|260581226|ref|ZP_05849045.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|319775826|ref|YP_004138314.1| putative holliday junction resolvase [Haemophilus influenzae F3047]
gi|319896638|ref|YP_004134831.1| holliday junction resolvase [Haemophilus influenzae F3031]
gi|329123670|ref|ZP_08252230.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius
ATCC 11116]
gi|1175215|sp|P43981|RUVX_HAEIN RecName: Full=Putative Holliday junction resolvase
gi|81336682|sp|Q4QNN8|RUVX_HAEI8 RecName: Full=Putative Holliday junction resolvase
gi|167012730|sp|A5UGC3|RUVX_HAEIG RecName: Full=Putative Holliday junction resolvase
gi|1573274|gb|AAC21970.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|68057106|gb|AAX87359.1| putative holliday junction resolvase [Haemophilus influenzae
86-028NP]
gi|144979115|gb|EDJ88801.1| Holliday junction resolvase-like protein [Haemophilus influenzae
22.1-21]
gi|145268240|gb|EDK08235.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittAA]
gi|145270385|gb|EDK10320.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittHH]
gi|145272384|gb|EDK12292.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittII]
gi|145274831|gb|EDK14693.1| Holliday junction resolvase-like protein [Haemophilus influenzae
22.4-21]
gi|148718701|gb|ABQ99828.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittGG]
gi|260092151|gb|EEW76095.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|301169015|emb|CBW28612.1| predicted Holliday junction resolvase [Haemophilus influenzae
10810]
gi|309750279|gb|ADO80263.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
gi|309972534|gb|ADO95735.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
gi|317432140|emb|CBY80491.1| putative holliday junction resolvase [Haemophilus influenzae F3031]
gi|317450417|emb|CBY86633.1| putative holliday junction resolvase [Haemophilus influenzae F3047]
gi|327469869|gb|EGF15334.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius
ATCC 11116]
Length = 139
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 1/135 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG AI A P + + + I+GLPLNM
Sbjct: 6 LAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+E R F + + R V DERLTT A+ + + + + K+D +
Sbjct: 66 DGTEQDLTLRARKFANRLQGR-FGVNVHLQDERLTTTQARSEIFERGGFKALKKGKIDGV 124
Query: 140 AAALILQEVLDRISF 154
+A LIL+ + +
Sbjct: 125 SACLILESWFEYAEY 139
>gi|288574978|ref|ZP_06393335.1| Holliday junction resolvase YqgF [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570719|gb|EFC92276.1| Holliday junction resolvase YqgF [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 138
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I ++D+GT RIG+A+SDP FA + +L +T+ +++ ++GLP
Sbjct: 3 RRIVALDMGTVRIGVAMSDPLGSFAQGVAVWDAEGDW--LSDLRDLVTSRDVSTVVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ NG++GP + A + + + V WDER T+ A ++LI+ +VSRKKR +V
Sbjct: 61 IRENGTKGPSAENVEAKTEAVREAFPDLEIVMWDERYTSTIANRVLIEGDVSRKKRKGQV 120
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD +
Sbjct: 121 DKVAATVILQGYLDSLR 137
>gi|221632739|ref|YP_002521960.1| hypothetical protein trd_0729 [Thermomicrobium roseum DSM 5159]
gi|221156262|gb|ACM05389.1| conserved hypothetical protein TIGR00250 [Thermomicrobium roseum
DSM 5159]
Length = 161
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+D+G +R+G+AISD A P + + L+ I+ + ++GLP
Sbjct: 7 GRTMGLDVGGRRVGVAISDEMGMIASPLATIDLDRDG--LERLVELISRYDPVLIVVGLP 64
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ M G EG + T+AF + +R + P VFWDERLT+ +A+++L D V RK+R + V
Sbjct: 65 VTMRGREGSQAVETKAFAARLAER-IDRPIVFWDERLTSSAAERLLTDAGVGRKRRRELV 123
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
D++AAAL+LQ LD G
Sbjct: 124 DAVAAALLLQSYLDAQRSQRGRHG 147
>gi|315127641|ref|YP_004069644.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp.
SM9913]
gi|315016155|gb|ADT69493.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp.
SM9913]
Length = 149
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 3/143 (2%)
Query: 10 VKSLKP--NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
K++KP + + D GTK IG+AI A + + ++ +
Sbjct: 3 KKTVKPQGERTVMGFDFGTKSIGIAIGQELTGSATSLKAVKAQDGIPNWDDIAVQVKEWQ 62
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
++GLPLNM+G+ + F + + + + DERLTT A+ L +
Sbjct: 63 PDLMVVGLPLNMDGTSQEVTFKAKKFANRLHN-HYGIAVHTQDERLTTADAKARLFERGG 121
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
+ VD+++A +IL+ +
Sbjct: 122 YKNLGKGNVDNMSAVIILESFFE 144
>gi|118617375|ref|YP_905707.1| Holliday junction resolvase-like protein [Mycobacterium ulcerans
Agy99]
gi|183982184|ref|YP_001850475.1| hypothetical protein MMAR_2171 [Mycobacterium marinum M]
gi|167012739|sp|A0PPG7|RUVX_MYCUA RecName: Full=Putative Holliday junction resolvase
gi|226731630|sp|B2HNC2|RUVX_MYCMM RecName: Full=Putative Holliday junction resolvase
gi|118569485|gb|ABL04236.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
gi|183175510|gb|ACC40620.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 170
Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 62/144 (43%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
ID+GT RIG+A SDP A P + R++ + L + + I+GL
Sbjct: 24 RGRRLGIDVGTVRIGVASSDPDGILATPLETVRRERSGKHLRRLATLVGETEAVEVIVGL 83
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + G + R +P DERLTTVSAQ+ L + V K +
Sbjct: 84 PRTLADRIGSSAQDAIDLADELAARVAPIPVRLADERLTTVSAQRSLREAGVRAKNQRAV 143
Query: 136 VDSIAAALILQEVLDRISFLESSK 159
+D AA ILQ LD+ L +
Sbjct: 144 IDQAAAVAILQAWLDQRRTLAGGR 167
>gi|325298806|ref|YP_004258723.1| Holliday junction resolvase [Bacteroides salanitronis DSM 18170]
gi|324318359|gb|ADY36250.1| Holliday junction resolvase [Bacteroides salanitronis DSM 18170]
Length = 139
Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++DP + A + Q LL ++ E + IIG
Sbjct: 1 MSRILAIDYGKKRTGIAVTDPMQVIASGLTTVPTH---QLMDFLLGYVRQEAVERIIIGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + + F++ + + +P +DER T+V A Q ++ + +K R K
Sbjct: 58 PKQMNNEDSENMKRIVPFMNQLKKKLPDMPVELYDERFTSVLAHQAMLAGGLKKKDRQNK 117
Query: 136 --VDSIAAALILQEVLDRISFL 155
VD I+A +ILQ L+ L
Sbjct: 118 ALVDEISATIILQSYLEAKRGL 139
>gi|262198569|ref|YP_003269778.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365]
gi|262081916|gb|ACY17885.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365]
Length = 139
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G K IG+A SD AHP + R+ + + ++ ++GLPL +
Sbjct: 5 LGLDVGMKTIGVAGSDELGLAAHPVETIARRGTGPDVARVCALVSEREATDVVVGLPLEL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G EG R R + + V WDER +T + +++LI+ ++SR+KR Q +D
Sbjct: 65 SGQEGRRARRVRVLIDALRAALPDEVAVHTWDERFSTAAVERVLIEADMSRRKRKQVIDK 124
Query: 139 IAAALILQEVLD 150
AAA ILQ LD
Sbjct: 125 QAAAYILQGWLD 136
>gi|310658791|ref|YP_003936512.1| holliday junction resolvase [Clostridium sticklandii DSM 519]
gi|308825569|emb|CBH21607.1| putative Holliday junction resolvase [Clostridium sticklandii]
Length = 139
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D+G KRIG+A+SD A P L RK + E+ I E+I ++GL
Sbjct: 1 MRRILGLDIGDKRIGIAVSDLLGMMAQPLYTLTRKSTKEAINEIAEIIQKEDIKQVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NM+ SEG + TR F ++++ + ++ DERLT+ A+Q L M +++ K +
Sbjct: 61 PKNMDSSEGIQAKRTRDFSQLLLEKTNSNIEIIYCDERLTSKMARQSLSHMKLAKAKEKK 120
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA ILQ LD
Sbjct: 121 LIDTAAAVHILQGYLDSKK 139
>gi|294788595|ref|ZP_06753837.1| putative Holliday junction resolvase [Simonsiella muelleri ATCC
29453]
gi|294483472|gb|EFG31157.1| putative Holliday junction resolvase [Simonsiella muelleri ATCC
29453]
Length = 154
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A + AHP + + + + + IT ++G
Sbjct: 11 PMGCALAFDFGETRIGVAQGNREIAIAHPIATITGQSNEEKLIAIARLITQWQPEYLVVG 70
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E R F H + + + +P + DER +++ A+++L V KK
Sbjct: 71 LPVHADGTEHEVTALARKFGHRL-NARFRLPIYWADERFSSLYAEELLKQAQVFGKKNKA 129
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA ILQ D
Sbjct: 130 VLDQVAAQAILQSFFDN 146
>gi|168054242|ref|XP_001779541.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669022|gb|EDQ55617.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 171
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 4/162 (2%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALE 58
M ++ ++ L + L + +D+G++ IGLA+SDP R A P + R T +
Sbjct: 1 MELVSLKQLFQRLSSGGRLLGLDVGSRNIGLAVSDPKCRIASPHSVMYRSNTTTLKNISR 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTV 116
L S + NI +IG PL + G +G + + F + R + +V+WDERLT+V
Sbjct: 61 LESLVQEMNITGLVIGYPLELTGFQGKQGAQVKLFAKELQMSGRFPNLAYVYWDERLTSV 120
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ ++ M+++ ++R VD ++A ILQ LD +S +E+
Sbjct: 121 AVTNVIGSMDITGRRRKNIVDKMSALCILQGCLDSLSRIENG 162
>gi|325105793|ref|YP_004275447.1| Holliday junction resolvase YqgF [Pedobacter saltans DSM 12145]
gi|324974641|gb|ADY53625.1| Holliday junction resolvase YqgF [Pedobacter saltans DSM 12145]
Length = 138
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I S D GTKRIG+A++DP + A+ + K + + L ++ TE++ F++G
Sbjct: 1 MARIMSFDFGTKRIGIAVTDPMKIIANGLTTVHPKDIVEF---LKKYLLTESVETFVVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P M+G++ RAFV+ + +P DER T+ A ++ +K R
Sbjct: 58 PKQMDGTDSQSAVHVRAFVNLLKKNFSEIPVEMMDERFTSKMASAAILQSGAKKKTRQDK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD+++A +ILQ ++++
Sbjct: 118 ALVDTVSATIILQSYMEKLGM 138
>gi|301154797|emb|CBW14260.1| predicted Holliday junction resolvase [Haemophilus parainfluenzae
T3T1]
Length = 139
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG A+ A P + + + ++GLPLNM
Sbjct: 6 IAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIEKCLKDWKPDVIVVGLPLNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+E + F + + + + + DERLTTVSA+ + R KVD I
Sbjct: 66 DGTEQDLTLRAKKFANRL-NGRFGIKVELQDERLTTVSARDEIFQRGGYRALNKGKVDGI 124
Query: 140 AAALILQEVLDRIS 153
+A LIL+ + S
Sbjct: 125 SACLILESWFENYS 138
>gi|325577677|ref|ZP_08147952.1| crossover junction endodeoxyribonuclease [Haemophilus
parainfluenzae ATCC 33392]
gi|325160422|gb|EGC72548.1| crossover junction endodeoxyribonuclease [Haemophilus
parainfluenzae ATCC 33392]
Length = 139
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG A+ A P + + + ++GLPLNM
Sbjct: 6 IAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIEKCLKDWKPDVIVVGLPLNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+E + F + + + + + DERLTTVSA+ + R KVD I
Sbjct: 66 DGTEQDLTLRAKKFANRL-NGRFGIKVELQDERLTTVSARDEIFQRGGYRALNKGKVDGI 124
Query: 140 AAALILQEVLDRIS 153
+A LIL+ + S
Sbjct: 125 SACLILESWFESYS 138
>gi|225848600|ref|YP_002728763.1| hypothetical protein SULAZ_0781 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644154|gb|ACN99204.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 138
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 3/139 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D+GTKRIG+A+SDP A P ++ K + S I ++N++ +IGL
Sbjct: 1 MSRILALDIGTKRIGVAVSDPLGITAKPLDYI--KNDDNVFQNIKSLIESQNVSTVVIGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ + G +G +V T+ F + ++ VF DER TT A++ L +K
Sbjct: 59 PITLKGLQGQQVEYTKEFAEKLKHYIPHINIVFIDERFTTSLAEKHLSQT-KKKKNIKDY 117
Query: 136 VDSIAAALILQEVLDRISF 154
+DS++A ILQ LD +SF
Sbjct: 118 IDSLSAVFILQTYLDSLSF 136
>gi|56751716|ref|YP_172417.1| Holliday junction resolvase-like protein [Synechococcus elongatus
PCC 6301]
gi|62900910|sp|Q5N1C3|RUVX_SYNP6 RecName: Full=Putative Holliday junction resolvase
gi|56686675|dbj|BAD79897.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 149
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G +RIG+A D +VR+ + + + +IGLP +M
Sbjct: 7 LGLDVGRRRIGVAGCDRLGITVQGLTTIVRRDFASDVAAISAIAKERQVELLVIGLPYSM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + T+ F + + +P + DERLT+ A++++ + S + +D
Sbjct: 67 DGSLGSQAKQTQRFATRLSKA-LQLPITYVDERLTSFEAEEMIKAVGRSPSRDKGAIDRK 125
Query: 140 AAALILQEVLDRIS 153
AAALILQ+ LD
Sbjct: 126 AAALILQQWLDEQR 139
>gi|291301347|ref|YP_003512625.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM
44728]
gi|290570567|gb|ADD43532.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM
44728]
Length = 151
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENI 68
P +D+G R+G+A+SDP A P + R + + + ++
Sbjct: 5 PPRGRRLGVDVGKVRVGVALSDPDGILAAPLETVPRDMSGKSVPPADISRIADLVNEHSV 64
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+IGLP+ ++G E +RA+ + VP F DERLTT A + L + V
Sbjct: 65 VEIVIGLPVTLSGEESYAAAESRAYAEQVTAAVGDVPVRFVDERLTTAVASRRLSERGVK 124
Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153
K+R VD AA ILQ L++
Sbjct: 125 GKRRKAVVDQAAAVEILQLWLEKQR 149
>gi|313905326|ref|ZP_07838692.1| Holliday junction resolvase YqgF [Eubacterium cellulosolvens 6]
gi|313469796|gb|EFR65132.1| Holliday junction resolvase YqgF [Eubacterium cellulosolvens 6]
Length = 146
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFIIG 74
I +D G K +G+A+SD A + R++ T+ T + I+ ++G
Sbjct: 2 RILGLDYGAKTVGVAVSDALGITAQALETVTRERETKLRRTVARIAELCEQYEISKIVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRI 133
LPL M+ G R F M+ ++ + + WDERLTTV+A ++L +M V + R
Sbjct: 62 LPLLMSDEIGDRAQKAMEFGE-MLKKRTGLEVIMWDERLTTVAADEVLDEMGVRGRHNRK 120
Query: 134 QKVDSIAAALILQEVLDRISFLE 156
+D IAA ILQE LD S E
Sbjct: 121 AVIDQIAAGFILQEYLDAQSAKE 143
>gi|288801321|ref|ZP_06406775.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str.
F0039]
gi|288331704|gb|EFC70188.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str.
F0039]
Length = 137
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++D + A+ + + + L ++I E + IIGL
Sbjct: 1 MSRILAIDYGQKRTGLAVTDTLQLIANGLDTIPTHTLYEF---LCAYIEKEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P NG + FV + VP ++DER T+V A + +ID + +K R
Sbjct: 58 PRQTNGLPSENMKRIEPFVARWKKHQPNVPIEYYDERFTSVLAHRAMIDGGLKKKARQDK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD I+A +ILQ+ L+
Sbjct: 118 ALVDKISATIILQDYLEHRR 137
>gi|88607507|ref|YP_504940.1| hypothetical protein APH_0332 [Anaplasma phagocytophilum HZ]
gi|146325550|sp|Q2GL11|RUVX_ANAPZ RecName: Full=Putative Holliday junction resolvase
gi|88598570|gb|ABD44040.1| conserved hypothetical protein TIGR00250 [Anaplasma phagocytophilum
HZ]
Length = 166
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +L +L+P + I ID G ++IGLA+SDP A P R+ + Q EL
Sbjct: 1 MLCESIRELFSALEPGRRILGIDFGERKIGLALSDPTYLIAIPHSVYHRRNMRQDLGELS 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +E+ A ++G PL +G EG RAF +I + V DER TT A +
Sbjct: 61 AVLRSEDAAVVVMGNPLQSDGLEGEMCQIVRAFAQKLIKKS-GVSIYLHDERYTTAMASR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + RK+ + D I+AAL+LQ+VLD
Sbjct: 120 ATREAGLRRKESQKIDDKISAALVLQQVLD 149
>gi|297537845|ref|YP_003673614.1| Holliday junction resolvase YqgF [Methylotenera sp. 301]
gi|297257192|gb|ADI29037.1| Holliday junction resolvase YqgF [Methylotenera sp. 301]
Length = 164
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ D G +RIG+A+ + A+P + + + + I+GLP
Sbjct: 30 STVLCFDFGEQRIGVAVGEHLLASANPLVTIDNESNEVRFEAISKLVKEWQPKLLIVGLP 89
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+++G+E + F + + + +P V DER ++V A +L + + + + +
Sbjct: 90 LSLDGAETSVTQLCKKFARRL-NGRFNLPVVLIDERYSSVEASDLLNQSGIKGRAQKEML 148
Query: 137 DSIAAALILQEVL 149
D +AA ILQ
Sbjct: 149 DQVAAQTILQSYF 161
>gi|81301207|ref|YP_401415.1| Holliday junction resolvase-like protein [Synechococcus elongatus
PCC 7942]
gi|146325618|sp|Q31KJ1|RUVX_SYNE7 RecName: Full=Putative Holliday junction resolvase
gi|81170088|gb|ABB58428.1| Holliday junction resolvase YqgF [Synechococcus elongatus PCC 7942]
Length = 149
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G +RIG+A D +VR+ + + + +IGLP +M
Sbjct: 7 LGLDVGRRRIGVAGCDRLGITVQGLTTIVRRDFASDVAAISAIAKERQVELLVIGLPYSM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + T+ F + + +P + DERLT+ A++++ S + +D
Sbjct: 67 DGSLGSQAKQTQRFATRLSKA-LQLPITYVDERLTSFEAEEMIKAEGRSPSRDKGAIDRK 125
Query: 140 AAALILQEVLDRIS 153
AAALILQ+ LD
Sbjct: 126 AAALILQQWLDEQR 139
>gi|145632549|ref|ZP_01788283.1| Holliday junction resolvase-like protein [Haemophilus influenzae
3655]
gi|229845007|ref|ZP_04465144.1| Holliday junction resolvase-like protein [Haemophilus influenzae
6P18H1]
gi|144986744|gb|EDJ93296.1| Holliday junction resolvase-like protein [Haemophilus influenzae
3655]
gi|229812141|gb|EEP47833.1| Holliday junction resolvase-like protein [Haemophilus influenzae
6P18H1]
Length = 139
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 1/135 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG AI A P + + + I+GLPLNM
Sbjct: 6 LAFDFGTKSIGCAIGQSITGTAQTLPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+E R F + + R V DERLTT A+ + + + + K+D +
Sbjct: 66 DGTEQDLTLRARKFANRLQGR-FGVNIHLQDERLTTTQARSEIFERGGFKALKKGKIDGV 124
Query: 140 AAALILQEVLDRISF 154
+A LIL+ + +
Sbjct: 125 SACLILESWFEYAEY 139
>gi|226366326|ref|YP_002784109.1| Holliday junction resolvase-like protein [Rhodococcus opacus B4]
gi|254767522|sp|C1B4H5|RUVX_RHOOB RecName: Full=Putative Holliday junction resolvase
gi|226244816|dbj|BAH55164.1| putative Holliday junction resolvase [Rhodococcus opacus B4]
Length = 178
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 4/144 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIA 69
ID+G+ RIG+A SDP A P + R K + +
Sbjct: 16 PGRGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKDRGPDAPDIRRIADIVEEYEAV 75
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
I+GLP + G G F + + +P DERLTTV+A + L + VS
Sbjct: 76 EVIVGLPQTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAARALRESGVSA 135
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
+ + +D AA ILQ LD S
Sbjct: 136 RGQRPVIDQAAAVAILQGWLDERS 159
>gi|111024086|ref|YP_707058.1| Holliday junction resolvase-like protein [Rhodococcus jostii RHA1]
gi|118597220|sp|Q0S0N6|RUVX_RHOSR RecName: Full=Putative Holliday junction resolvase
gi|110823616|gb|ABG98900.1| probable Holliday junction resolvase [Rhodococcus jostii RHA1]
Length = 178
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 4/144 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIA 69
ID+G+ RIG+A SDP A P + R K + +
Sbjct: 16 PGRGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRIADIVEEYEAV 75
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
I+GLP + G G F + + +P DERLTTV+A + L + VS
Sbjct: 76 EVIVGLPQTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAARALRESGVSA 135
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
+ + +D AA ILQ LD S
Sbjct: 136 RGQRPVIDQAAAVAILQGWLDERS 159
>gi|307728796|ref|YP_003906020.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1003]
gi|307583331|gb|ADN56729.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1003]
Length = 146
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + + A P + + E+ I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTKSARPLVIVQNRSREYRFAEVGKLIAEWKPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ R F + + + + +P + DER ++V A+ L K R
Sbjct: 67 LPMHPDGTPHEMTQLARRFGNQL-NGRFNLPVTWVDERYSSVEAEAGLRAT----KGRAD 121
Query: 135 KVDSIAAALILQEVLDRIS 153
++D+ AA++ILQ+ LD +S
Sbjct: 122 RLDAEAASIILQQYLDGLS 140
>gi|212636354|ref|YP_002312879.1| Holliday junction resolvase-like protein [Shewanella piezotolerans
WP3]
gi|212557838|gb|ACJ30292.1| Holliday junction resolvase, putative [Shewanella piezotolerans
WP3]
Length = 140
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + D GTK IG+AI A P + E+ + IT ++GL
Sbjct: 3 SKTVLGFDYGTKSIGIAIGQQLTASARPLLSIKAVDGIPKWEEIGAIITEWKPDLIVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E + F + + + + V V DERLTT A+ L +M + +
Sbjct: 63 PLNMDGTEQDITLRAKKFGNRL-NGRFGVKVVTQDERLTTADAKARLFEMGGYKALTKGQ 121
Query: 136 VDSIAAALILQEVLDR 151
VD+++A LI++ +
Sbjct: 122 VDAMSAVLIIESYFEN 137
>gi|327540307|gb|EGF26893.1| Resolvase, holliday junction-type, YqgF-like protein
[Rhodopirellula baltica WH47]
Length = 173
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +AS+D GT RIG+AI DP A P + + A +
Sbjct: 1 MPT-TITTAEDGFPATGRLASVDYGTVRIGVAICDPDWILASPLEVHPVSTLEKDAQYFI 59
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+E IAA+++GLP++ +G E + +R F + +P +DER TTV+A
Sbjct: 60 DLAKSERIAAWVVGLPIHCDGGESDKSKESRKFAA-WLKETTGLPTRLFDERFTTVAANA 118
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ +RKK Q+VD++AA ++L+ L+ + G
Sbjct: 119 KIRQGKTTRKKTKQRVDAVAAQVLLESFLEACRYRGELAG 158
>gi|119475413|ref|ZP_01615766.1| Holliday junction resolvase-like protein [marine gamma
proteobacterium HTCC2143]
gi|119451616|gb|EAW32849.1| Holliday junction resolvase-like protein [marine gamma
proteobacterium HTCC2143]
Length = 153
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK IGLAI A+P L K ++ I +IGLPLN
Sbjct: 14 VLCFDFGTKSIGLAIGQSITNTANPLTELKAKDGVPNWEQIKKIIDEWQPDLLLIGLPLN 73
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS + F + + R +P DERL++ A+ +I SR + VDS
Sbjct: 74 MDGSFSELSRRAKKFANRLHGR-FGLPVSMADERLSSYEAKGEIIQQTGSRDFKRNNVDS 132
Query: 139 IAAALILQEVL 149
+AA +IL+ L
Sbjct: 133 LAAKIILESWL 143
>gi|218246765|ref|YP_002372136.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 8801]
gi|257059807|ref|YP_003137695.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 8802]
gi|226725510|sp|B7JY16|RUVX_CYAP8 RecName: Full=Putative Holliday junction resolvase
gi|218167243|gb|ACK65980.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 8801]
gi|256589973|gb|ACV00860.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 8802]
Length = 139
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KRIG+A D A + R +L ++ ++GLP +M
Sbjct: 7 LGLDIGKKRIGVAGCDGTGLIATGLTTIERTSFQSDVEQLHQWVKEREAQILVVGLPYSM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + F I + +P + DERLT+V A+ L +D
Sbjct: 67 DGSLGFQAKQVQKFTRR-ISHVLQLPVEYVDERLTSVEAEAQLKSQKRFSTWDKGAIDRQ 125
Query: 140 AAALILQEVLDRIS 153
AA +ILQ+ LD
Sbjct: 126 AATIILQQWLDSRR 139
>gi|282898802|ref|ZP_06306789.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii
CS-505]
gi|281196329|gb|EFA71239.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii
CS-505]
Length = 154
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G+KR+G+A D A + RK + E+ + + ++G+P +
Sbjct: 13 LGLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDLQEIRGLVEKRRVQILVVGIPYSG 72
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + F + + + +P DERLT+ A+Q+L+ N S VD
Sbjct: 73 DGSMGEQARRIQKFANRLAKA-LGLPLEHVDERLTSFQAEQMLLAENRSPSYNKGLVDRK 131
Query: 140 AAALILQEVLD 150
AA++ILQ+ LD
Sbjct: 132 AASIILQQWLD 142
>gi|71279034|ref|YP_267994.1| Holliday junction resolvase-like protein [Colwellia psychrerythraea
34H]
gi|146325564|sp|Q486M1|RUVX_COLP3 RecName: Full=Putative Holliday junction resolvase
gi|71144774|gb|AAZ25247.1| conserved hypothetical protein TIGR00250 [Colwellia psychrerythraea
34H]
Length = 148
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G K IG+A+ A P + L ++ ++GL
Sbjct: 11 QRTVIGFDFGKKYIGVAVGQEMTGSATPLGSVKATDGIPHWDNLAKYLKEWQPDFIVVGL 70
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GSE + F N I + + F DERLTT A++ L + +
Sbjct: 71 PLNMDGSEQQLTLDAKKFG-NRIHGRFGIQVEFQDERLTTADAKEQLFARGGFKNLKKDN 129
Query: 136 VDSIAAALILQEVLDR 151
+D+ +A LI++ ++
Sbjct: 130 IDAESARLIIESYFEQ 145
>gi|148550072|ref|YP_001270174.1| Holliday junction resolvase-like protein [Pseudomonas putida F1]
gi|167036035|ref|YP_001671266.1| Holliday junction resolvase-like protein [Pseudomonas putida GB-1]
gi|325275084|ref|ZP_08141067.1| Holliday junction resolvase-like protein [Pseudomonas sp. TJI-51]
gi|148514130|gb|ABQ80990.1| Holliday junction resolvase YqgF [Pseudomonas putida F1]
gi|166862523|gb|ABZ00931.1| Holliday junction resolvase YqgF [Pseudomonas putida GB-1]
gi|313500972|gb|ADR62338.1| Putative Holliday junction resolvase [Pseudomonas putida BIRD-1]
gi|324099780|gb|EGB97643.1| Holliday junction resolvase-like protein [Pseudomonas sp. TJI-51]
Length = 141
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G+K+IG+A+ A L + ++ I A ++GLPLN
Sbjct: 7 LLGFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKLIAEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + + + +P DERLTT A+ + + R VD
Sbjct: 67 MDGTPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125
Query: 138 SIAAALILQEVLD 150
+IAAAL+LQ L+
Sbjct: 126 AIAAALLLQGWLE 138
>gi|26991673|ref|NP_747098.1| Holliday junction resolvase-like protein [Pseudomonas putida
KT2440]
gi|32130017|sp|Q88D32|RUVX_PSEPK RecName: Full=Putative Holliday junction resolvase
gi|24986772|gb|AAN70562.1|AE016699_3 conserved hypothetical protein TIGR00250 [Pseudomonas putida
KT2440]
Length = 141
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G+K+IG+A+ A L + ++ I A ++GLPLN
Sbjct: 7 LLGFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKLIAEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + + + +P DERLTT A+ + + R VD
Sbjct: 67 MDGTPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125
Query: 138 SIAAALILQEVLD 150
+IAAAL+LQ L+
Sbjct: 126 AIAAALLLQGWLE 138
>gi|148825415|ref|YP_001290168.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittEE]
gi|229846394|ref|ZP_04466502.1| Holliday junction resolvase-like protein [Haemophilus influenzae
7P49H1]
gi|260582596|ref|ZP_05850386.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127]
gi|167012729|sp|A5UAI4|RUVX_HAEIE RecName: Full=Putative Holliday junction resolvase
gi|148715575|gb|ABQ97785.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittEE]
gi|229810487|gb|EEP46205.1| Holliday junction resolvase-like protein [Haemophilus influenzae
7P49H1]
gi|260094407|gb|EEW78305.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127]
Length = 139
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG AI A P + + + I+GLPLNM
Sbjct: 6 LAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+E R F + + R V DERLTT A+ + + + + KVD I
Sbjct: 66 DGTEQNLTLLARKFANRLQGR-FGVNVHLQDERLTTTQARSEIFERGGFKALKKGKVDGI 124
Query: 140 AAALILQEVLD 150
+A LIL+ +
Sbjct: 125 SACLILESWFE 135
>gi|254456227|ref|ZP_05069656.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083229|gb|EDZ60655.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter
sp. HTCC7211]
Length = 151
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 1/151 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
++ IEDL K + +DLG+KRIG++I D + A P + + + EL
Sbjct: 1 MITIEDLKKKQSETSRLIGLDLGSKRIGVSICDEKQSIATPFKTINKTNTNELINELKKI 60
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I +I ++G P+NM+G+ G S N ID+ + + WDERL+TV A +
Sbjct: 61 IEEYDIKGIVVGNPINMDGTLGRSSQSVNDVSDN-IDKAIDIDVCLWDERLSTVGAFNLS 119
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
++V+ KR + +D AAA ILQ +D ++
Sbjct: 120 SQLDVNVSKREKNIDQNAAAFILQGAIDFLN 150
>gi|30249631|ref|NP_841701.1| Holliday junction resolvase-like protein [Nitrosomonas europaea
ATCC 19718]
gi|62901022|sp|Q82U42|RUVX_NITEU RecName: Full=Putative Holliday junction resolvase
gi|30138994|emb|CAD85578.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
Length = 148
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D G +RIG+AI + R AHP + + ++ I ++GL
Sbjct: 9 SGTVLAFDFGKRRIGVAIGEHELRMAHPLTTIDQSMTRPRFEKIAELIEAWQPVLLVVGL 68
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
++ +G+E R F + + + +P DER TTV A+ +L ++ V+ KK+
Sbjct: 69 SVHADGTEHEITRLCRRFARRL-EGRFRIPVALADERYTTVIARSVLEEVGVTGKKQRPM 127
Query: 136 VDSIAAALILQEVLD 150
+D IAA ILQ D
Sbjct: 128 LDQIAAQHILQTYFD 142
>gi|296170782|ref|ZP_06852354.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894597|gb|EFG74334.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 169
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 57/141 (40%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+D+G+ RIG+A SDP A P + R + + L ++
Sbjct: 19 PGRGRRLGVDVGSVRIGVACSDPDGILATPVETVRRDRSGKHVRRLAELAAELGAVEVVV 78
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP + GP + R P DERLTTVSAQ+ L V K++
Sbjct: 79 GLPRTLADRTGPSALDAMELADTLAQRLAPTPVRLADERLTTVSAQRSLRAAGVRAKEQR 138
Query: 134 QKVDSIAAALILQEVLDRISF 154
+D AA ILQ LD+
Sbjct: 139 AVIDQAAAVAILQSWLDQRRA 159
>gi|323525007|ref|YP_004227160.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1001]
gi|323382009|gb|ADX54100.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1001]
Length = 146
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A + + EL I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRSARALVVVQNRSREYRFAELGKLIAQWKPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + + + + +P + DER ++V A+ L K R
Sbjct: 67 LPMHPDGTPHEMTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAEATLRAN----KGRAD 121
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASVILQQYLDGLS 140
>gi|269958631|ref|YP_003328418.1| putative Holliday junction resolvase [Anaplasma centrale str.
Israel]
gi|269848460|gb|ACZ49104.1| putative Holliday junction resolvase [Anaplasma centrale str.
Israel]
Length = 157
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IE + L N+ I +D G +++GLAISD A P +R+ + Q EL
Sbjct: 1 MLCESIEGFFEKLGANKKILGLDFGERKLGLAISDSTGTIAMPHSVYLRRNIRQDLGELN 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + E I A ++GLPL ++G EG RAFV +I + + DER TT A +
Sbjct: 61 AILKREGIIAAVVGLPLQLDGLEGEMCAVVRAFVRKLIKKS-GIYVYLHDERYTTAMASR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + RK+ + D I+A LILQ+VLD
Sbjct: 120 ATESLGLRRKESQKVDDKISAVLILQQVLD 149
>gi|170692129|ref|ZP_02883293.1| Holliday junction resolvase YqgF [Burkholderia graminis C4D1M]
gi|170143413|gb|EDT11577.1| Holliday junction resolvase YqgF [Burkholderia graminis C4D1M]
Length = 146
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A P + + E+ I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRSARPLVIVQNRSREYRFAEVGKLIAEWKPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + + + + +P + DER ++V A+ K R
Sbjct: 67 LPMHPDGTPHEMTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAEATTRAN----KGRAD 121
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASIILQQYLDGLS 140
>gi|170719654|ref|YP_001747342.1| Holliday junction resolvase-like protein [Pseudomonas putida W619]
gi|169757657|gb|ACA70973.1| Holliday junction resolvase YqgF [Pseudomonas putida W619]
Length = 141
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G+K+IG+A+ A L + ++ I A ++GLPLN
Sbjct: 7 LLGFDYGSKQIGVAVGQVVTGQARELCTLKAQNGVPDWAQVEKLINEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + + + +P DERLTT A+ + + R VD
Sbjct: 67 MDGTPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125
Query: 138 SIAAALILQEVLD 150
+IAAAL+LQ L+
Sbjct: 126 AIAAALLLQGWLE 138
>gi|218672210|ref|ZP_03521879.1| Holliday junction resolvase YqgF [Rhizobium etli GR56]
Length = 121
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 69/122 (56%), Positives = 92/122 (75%), Gaps = 1/122 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ + L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A L+
Sbjct: 1 MTVLTIEEMARILAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALM 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F TE +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAATEKVAGFVIGLPINMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 IL 122
L
Sbjct: 120 TL 121
>gi|257095138|ref|YP_003168779.1| Holliday junction resolvase YqgF [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047662|gb|ACV36850.1| Holliday junction resolvase YqgF [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 168
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D G KRIG+A+ + R AHP + + T+ + + I ++G P
Sbjct: 10 GTVLAFDFGEKRIGVAVGEWQLRQAHPLTTIHGEANTERFAAIAALIGEWRPTHLVVGRP 69
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+++G+ R F + R + +ERL++ AQ+ L ++ + + +
Sbjct: 70 TSLDGTPHAMTARCRRFADQLRGR-FGLGVDLAEERLSSFDAQERLRASGLNGRSAKKHL 128
Query: 137 DSIAAALILQEVLDRI 152
D++AA LILQ D +
Sbjct: 129 DAVAAQLILQSYFDSV 144
>gi|167570975|ref|ZP_02363849.1| Holliday junction resolvase-like protein [Burkholderia oklahomensis
C6786]
Length = 146
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ +L + + + D G KRIG+A+ + R A + + I
Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAVGNMLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ + F + + + + +P + DER ++V A+ L S
Sbjct: 61 DALVVGLPLHPDGAPHEMTQQAKRFGNQL-NGRFNLPVSWVDERYSSVEARADLRARG-S 118
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157
R VD+ AA +ILQ+ LD +
Sbjct: 119 GADR---VDAEAARIILQQYLDELPDHHE 144
>gi|289647574|ref|ZP_06478917.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 146
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ AH L + ++ + I A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQAHELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + + + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143
>gi|312195531|ref|YP_004015592.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c]
gi|311226867|gb|ADP79722.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c]
Length = 197
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
+D+GT RIG+++SDP A P L R +L + A ++GLP+
Sbjct: 48 LGVDVGTVRIGVSVSDPDGVLALPIGTLRRDVSDNSDLAQLAELVHERRAVAVVVGLPMT 107
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G EG R + ++ R +P DERLTT +A + + + +S + R VD
Sbjct: 108 LSGEEGLAAQRIRQYAQSLSARVAPIPVRLVDERLTTAAAHRRMAERGLSSRARRGLVDQ 167
Query: 139 IAAALILQEVLD 150
AA ILQ LD
Sbjct: 168 EAAVQILQHALD 179
>gi|104783977|ref|YP_610475.1| Holliday junction resolvase-like protein [Pseudomonas entomophila
L48]
gi|95112964|emb|CAK17692.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 141
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G+K+IG+A+ A L + ++ I A ++GLPLN
Sbjct: 7 LLGFDYGSKQIGVAVGQVITGQARELCVLKAQNGVPDWNQVEKLIKEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + + + +P DERLTT A+ + + R VD
Sbjct: 67 MDGTPSDMSERAEKFARRL-NGRYNLPVHTHDERLTTFEAKGEQMARGGRHGSYRDNPVD 125
Query: 138 SIAAALILQEVLD 150
+IAAAL+LQ L+
Sbjct: 126 AIAAALLLQGWLE 138
>gi|307152105|ref|YP_003887489.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7822]
gi|306982333|gb|ADN14214.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7822]
Length = 142
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G +R+G+A D A +VR +L + ++GLP M
Sbjct: 7 LGLDVGKRRVGVAGCDGLGLIATGLTTIVRSSFVADVEQLKQLVQQREAKILVVGLPYCM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG G + + + I + + +P + DERLT+ A++ L + +D
Sbjct: 67 NGDIGSQARQVQNYATR-IGKALQLPIEYVDERLTSYQAEEELKAQKRFSTRNKGLIDRQ 125
Query: 140 AAALILQEVLD 150
AAA+ILQ+ LD
Sbjct: 126 AAAIILQQWLD 136
>gi|32475183|ref|NP_868177.1| an endonuclease [Rhodopirellula baltica SH 1]
gi|62901008|sp|Q7UG74|RUVX_RHOBA RecName: Full=Putative Holliday junction resolvase
gi|32445724|emb|CAD78455.1| conserved hypothetical protein-putative an endonuclease
[Rhodopirellula baltica SH 1]
Length = 173
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 1/148 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+AS+D GT RIG+AI DP A P + A + +E IAA++
Sbjct: 12 FPATGRLASVDYGTVRIGVAICDPDWILASPLEVHPVSTPEKDAQYFIDLAKSERIAAWV 71
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP++ +G E + +R F + +P +DER TTV+A + +RKK
Sbjct: 72 VGLPIHCDGGESDKSKESRKFAA-WLKETTGLPTRLFDERFTTVAANAKIRQGKTTRKKT 130
Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
Q+VD++AA ++L+ L+ + G
Sbjct: 131 KQRVDAVAAQVLLESFLEACRYRGELAG 158
>gi|86741899|ref|YP_482299.1| Holliday junction resolvase-like protein [Frankia sp. CcI3]
gi|124107440|sp|Q2J822|RUVX_FRASC RecName: Full=Putative Holliday junction resolvase
gi|86568761|gb|ABD12570.1| Holliday junction resolvase YqgF [Frankia sp. CcI3]
Length = 202
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFI 72
+P I +D+G+ R+G+A SDPG A P L R ++ +L+ + +
Sbjct: 22 RPGVRI-GVDVGSVRVGVAASDPGGVLAVPVTTLARDRRGNADIDQLVLIVRERQAVEVV 80
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP M+G EG V R + + +R VP F DERLTTV+A + + + V + R
Sbjct: 81 VGLPRQMSGQEGRAVRLVRQYAEVLAERIAPVPVRFVDERLTTVAAHRRMAERGVRSRAR 140
Query: 133 IQKVDSIAAALILQEVLDRIS 153
VD AA ILQ LD
Sbjct: 141 RSLVDQEAAVQILQHDLDSRR 161
>gi|303241625|ref|ZP_07328124.1| Holliday junction resolvase YqgF [Acetivibrio cellulolyticus CD2]
gi|302590845|gb|EFL60594.1| Holliday junction resolvase YqgF [Acetivibrio cellulolyticus CD2]
Length = 140
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLP 76
I ID G RIG+A+SDP A + K + + ++ + I+G P
Sbjct: 2 RIIGIDYGDSRIGIAVSDPLGWTAQGIETISWKNDIEEPIKRIVELVNLYEAKKLIVGFP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR T F+ + R + + WDERL+TVSA + + ++ V + K+ V
Sbjct: 62 KNMNGTIGPRGEKTNDFIELITARIEGIQIIKWDERLSTVSANRTMHELGVKKSKKKHVV 121
Query: 137 DSIAAALILQEVLDRIS 153
D IAA ILQ LD +
Sbjct: 122 DQIAAVYILQGYLDSTA 138
>gi|330961163|gb|EGH61423.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 146
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + IT A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALITEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + + + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSEMSARAEKFSRRL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143
>gi|332885375|gb|EGK05624.1| Holliday junction resolvase [Dysgonomonas mossii DSM 22836]
Length = 141
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++D GTKR G+A+SD + A+ + + L +++ E++ I+GL
Sbjct: 1 MGRYLALDYGTKRTGIAVSDTLKIIANGLTTVPTHTL---LDYLKTYLQKEDVERIIVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + R FV + + ++DER T+ A + ++D + + R K
Sbjct: 58 PKQMNNEYSENMKHIRPFVKKLQSLYPDMQIEYYDERFTSALAHKTMLDAGLKKTDRQNK 117
Query: 136 --VDSIAAALILQEVLDRIS 153
VD I+A +ILQ ++ +
Sbjct: 118 SLVDEISATIILQGYMESLR 137
>gi|255014065|ref|ZP_05286191.1| Holliday junction resolvase-like protein [Bacteroides sp. 2_1_7]
gi|256839599|ref|ZP_05545108.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262382117|ref|ZP_06075255.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298375296|ref|ZP_06985253.1| Holliday junction resolvase [Bacteroides sp. 3_1_19]
gi|301310690|ref|ZP_07216629.1| putative Holliday junction resolvase [Bacteroides sp. 20_3]
gi|256738529|gb|EEU51854.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262297294|gb|EEY85224.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298267796|gb|EFI09452.1| Holliday junction resolvase [Bacteroides sp. 3_1_19]
gi|300832264|gb|EFK62895.1| putative Holliday junction resolvase [Bacteroides sp. 20_3]
Length = 140
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A +D + A+ + +V + L +I+ E + F++GL
Sbjct: 1 MGRIIAIDYGRKRTGIAATDILQMIANGVATVPSGEVVKY---LSDYISREPVDLFVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + AFV ++ +P ++DER T+V A + +++ + +KKR
Sbjct: 58 PKQMNNEPSENMKYVEAFVTHLKRTIPSIPVTYYDERFTSVLAHKAMLEGGLKKKKRQDK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ +
Sbjct: 118 GLVDEISAVIILQAYLESKKY 138
>gi|260767462|ref|ZP_05876399.1| putative Holliday junction resolvase [Vibrio furnissii CIP 102972]
gi|260617574|gb|EEX42756.1| putative Holliday junction resolvase [Vibrio furnissii CIP 102972]
Length = 141
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P E+ I +IGL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPDLLVIGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + F + R +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKALESITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARSELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
VD +A +IL+ +R+
Sbjct: 121 NVDCQSAVIILESWFERL 138
>gi|92112194|ref|YP_572122.1| Holliday junction resolvase YqgF [Chromohalobacter salexigens DSM
3043]
gi|146325563|sp|Q1R1I5|RUVX_CHRSD RecName: Full=Putative Holliday junction resolvase
gi|91795284|gb|ABE57423.1| Holliday junction resolvase YqgF [Chromohalobacter salexigens DSM
3043]
Length = 148
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GT+RIG+A+ + A L + ++ + + ++GLPLN
Sbjct: 9 VLAFDFGTRRIGVAVGNEMLGSATALAPLPARDGIPDWQQIAALLEEWQPDLLVVGLPLN 68
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E R F + + R P +DER +T +A++I D R VD
Sbjct: 69 MDGTESDMSRRARKFGNRLHGR-FGKPVEVFDERGSTRAAKRIARDAGHRGNYRDDGVDG 127
Query: 139 IAAALILQEVLDRISFLES 157
IAA LIL+ +FL+
Sbjct: 128 IAAQLILESFFADDTFLQR 146
>gi|325280500|ref|YP_004253042.1| Holliday junction resolvase [Odoribacter splanchnicus DSM 20712]
gi|324312309|gb|ADY32862.1| Holliday junction resolvase [Odoribacter splanchnicus DSM 20712]
Length = 141
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 77/143 (53%), Gaps = 5/143 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR+GLA+SDP A ++ +++ + L ++++ E + F++G
Sbjct: 1 MGRILAIDYGKKRVGLAVSDPCGIIATGLQTVLSQEIFRF---LEAYLSHEKVDLFVVGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P M+ S+ + + F+ + R ++P V +DER T+V A + L++ +K R
Sbjct: 58 PKQMDNSDSESMTYIKPFLSGLKRRFPHIPIVMYDERFTSVLAHKALLEGGAKKKTRQDK 117
Query: 134 QKVDSIAAALILQEVLDRISFLE 156
+D+++A +IL +++ L+
Sbjct: 118 ALIDTMSATIILTSYMEQQRNLK 140
>gi|28872152|ref|NP_794771.1| hypothetical protein PSPTO_5038 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213971481|ref|ZP_03399593.1| holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato T1]
gi|301385811|ref|ZP_07234229.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato Max13]
gi|302062228|ref|ZP_07253769.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato K40]
gi|302133701|ref|ZP_07259691.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|32130016|sp|Q87VA1|RUVX_PSESM RecName: Full=Putative Holliday junction resolvase
gi|28855406|gb|AAO58466.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213923763|gb|EEB57346.1| holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato T1]
gi|330873936|gb|EGH08085.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963801|gb|EGH64061.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331018478|gb|EGH98534.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 146
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + + + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSEMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143
>gi|149911576|ref|ZP_01900189.1| Holliday junction resolvase-like protein [Moritella sp. PE36]
gi|149805355|gb|EDM65367.1| Holliday junction resolvase-like protein [Moritella sp. PE36]
Length = 148
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D GTK IG+A+ A P + I I+G
Sbjct: 8 QRTLLGFDFGTKSIGIAVGQEITGTARPLVAFKANDGIPDWDLIEKQIKEWQPDLVIVGK 67
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E F + + R V DERLTT A+ L + + +
Sbjct: 68 PLNMDGTEQEITKRATKFANRLTGR-FNVKTEMHDERLTTKDAKARLFEEGGFKALQKGA 126
Query: 136 VDSIAAALILQEVLD 150
+DS +A +IL+ ++
Sbjct: 127 IDSASAMVILESWME 141
>gi|294669544|ref|ZP_06734611.1| hypothetical protein NEIELOOT_01443 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308457|gb|EFE49700.1| hypothetical protein NEIELOOT_01443 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 154
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A AHP + + + + I ++G
Sbjct: 9 PAGTCLAFDFGEARIGVAQGGAEVGIAHPLQTVSGEGNERKFAAIARLIEEWRPDYLVVG 68
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E R F + R +P + DERLT++ A+ +L + V +K+
Sbjct: 69 LPVHSDGTEHELTRLARKFGRRLHGR-FGLPVYWADERLTSLYAESLLGEAQVFGRKQKA 127
Query: 135 KVDSIAAALILQEVL 149
DS+AA ILQ
Sbjct: 128 VSDSVAAQAILQGFF 142
>gi|324999313|ref|ZP_08120425.1| Holliday junction resolvase-like protein [Pseudonocardia sp. P1]
Length = 142
Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIG 74
+D+G R+G+A+ DP A P + R + + + ++ ++G
Sbjct: 5 RGRRLGVDVGAVRVGVAMCDPDGILATPVETVPRDAEHGADVRRIAELVAEHDVVGVVLG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP N+ G +GP + R F + + VP DER+TTV A + L V +K+
Sbjct: 65 LPRNLRGEDGPAARAAREFADAL-QAGLDVPVELTDERMTTVVAARQLSGRGVKGRKQRS 123
Query: 135 KVDSIAAALILQEVLDRIS 153
VD AA ILQ LD+
Sbjct: 124 VVDQAAAVQILQGWLDQHR 142
>gi|187735685|ref|YP_001877797.1| Holliday junction resolvase YqgF [Akkermansia muciniphila ATCC
BAA-835]
gi|187425737|gb|ACD05016.1| Holliday junction resolvase YqgF [Akkermansia muciniphila ATCC
BAA-835]
Length = 141
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID G RIG+A +DP AHP + R + ++ + I ++GLP+ M
Sbjct: 8 LGIDYGEARIGIAATDPVGIMAHPVETIHRHQTDG-ISRIVQLVQERGIRTLVLGLPVRM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+EG RAF + +P +F DE LTTV AQ+ L K +D +
Sbjct: 67 DGTEGTAAAKVRAFGRELAAALPGLPLIFMDECLTTVIAQEKLHAAGKKAKNFRPIIDQV 126
Query: 140 AAALILQEVLDR 151
AA IL LD
Sbjct: 127 AAVEILNTWLDS 138
>gi|111224622|ref|YP_715416.1| Holliday junction resolvase-like protein [Frankia alni ACN14a]
gi|111152154|emb|CAJ63884.1| Conserved hypothetical protein. Putative Holliday junction
resolvase [Frankia alni ACN14a]
Length = 205
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFIIGLPLN 78
+D+G+ R+G+A SDPG A P L R K +L+ + ++GLP
Sbjct: 32 IGVDVGSVRVGVAASDPGGVLAVPVTTLARDKRHNADIEQLVQIVRDRQAVEVVVGLPRQ 91
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G EG V R +V + +R VP F DERLTTV+A + + + V + R VD
Sbjct: 92 MSGQEGRAVQLVRQYVEVLAERIAPVPVRFVDERLTTVAAHRRMAERGVRSRARRSLVDQ 151
Query: 139 IAAALILQEVLDR 151
AA ILQ LD
Sbjct: 152 EAAVQILQHDLDS 164
>gi|300865579|ref|ZP_07110357.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC
6506]
gi|300336413|emb|CBN55507.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC
6506]
Length = 170
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KRIG+A D A + R + + +T + + GLP NM
Sbjct: 10 LGLDIGQKRIGVAGCDGTGLIATGLGTIARSSFDKDVAQFRQLVTERGVQVLVSGLPYNM 69
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+ G + + + + +P + DERLT++ A+Q+++ +S + +D
Sbjct: 70 NGTLGFQARQVQKYASRLASALA-LPLEYVDERLTSIQAEQLMLTEKISPSRNKALIDRK 128
Query: 140 AAALILQEVLDRISFLESS 158
AAA+ILQ+ LD +
Sbjct: 129 AAAIILQQWLDERREMGRW 147
>gi|167563836|ref|ZP_02356752.1| Holliday junction resolvase-like protein [Burkholderia oklahomensis
EO147]
Length = 146
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ +L + + + D G KRIG+A+ + R A + + I
Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAVGNMLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ + F + M + + +P + DER ++V A+ L S
Sbjct: 61 DALVVGLPLHPDGAPHEMTQQAKRFGNQM-NGRFNLPVSWVDERYSSVEARADLRARG-S 118
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157
R VD+ AA +ILQ+ LD +
Sbjct: 119 GADR---VDAEAARIILQQYLDELPDHHE 144
>gi|329896502|ref|ZP_08271560.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC3088]
gi|328921719|gb|EGG29092.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC3088]
Length = 139
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D G ++IG+A+ + + A P L + +L + + A ++G
Sbjct: 1 MSRVLCFDYGLRQIGVAVGNAALQTAEPLCTLKAQDGIPNWDQLAALLEEWQPAIVVVGE 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+G++ R F N I + V DERL++ A+Q +M +
Sbjct: 61 PSNMDGTDSDMAARARKFA-NRIHGRFGVKVALADERLSSFEAKQQAREMGHDGDYKKTP 119
Query: 136 VDSIAAALILQEVLD 150
+D++AA +ILQ +
Sbjct: 120 IDALAAMIILQSYFE 134
>gi|328954563|ref|YP_004371897.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109]
gi|328454887|gb|AEB10716.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109]
Length = 144
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +DLG+KRIG+A+SD A + R + +L + + +IGLP
Sbjct: 2 RILGLDLGSKRIGIALSDALGWTAQGLTVIHRAGRARDLARVLELVKKYEVQEIVIGLPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+++G G A + +++P WDERLTT+ A+++L+ ++SR+KR Q +D
Sbjct: 62 HLDGRLGEGAEEALA-WAAELREHLHIPVHTWDERLTTLQAERVLLQADLSRRKRRQVID 120
Query: 138 SIAAALILQEVLDRISFLESSK 159
+AA LILQ LD ++ K
Sbjct: 121 KLAAGLILQAFLDNRRQTQAEK 142
>gi|157825581|ref|YP_001493301.1| Holliday junction resolvase-like protein [Rickettsia akari str.
Hartford]
gi|167012754|sp|A8GN18|RUVX_RICAH RecName: Full=Putative Holliday junction resolvase
gi|157799539|gb|ABV74793.1| Holliday junction resolvase-like protein [Rickettsia akari str.
Hartford]
Length = 154
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I ++ + L N P+ +ID G+K++G+A+S+ R A P + LL
Sbjct: 1 MIIKNLQAFSRLLILNSPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
S + + +IG+P++M+G+ + + F + +P DERLTT +A
Sbjct: 61 SIVEKYKVCGVVIGMPIDMSGAVTEQTNMVMKFAEEFTK-SINLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L + RK R D++AA++IL+ VLD + +
Sbjct: 120 FLKSFGMKRKDRDNNDDAVAASMILETVLDSMKNI 154
>gi|256821447|ref|YP_003145410.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069]
gi|256794986|gb|ACV25642.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069]
Length = 145
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 1/142 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ +L Q D G KR+G+A + + L + + I N+
Sbjct: 1 MTTLTTAQRYLCFDFGEKRLGVATGVRTQMSSQALTVLAVTNDQPDWKLIENLIREWNVE 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
AF++GLPLNM+ SE R F + + R +P DERL++ + L ++ +
Sbjct: 61 AFVVGLPLNMDDSEQELTQKARKFANRLHGR-FGLPTHLHDERLSSAEVKDYLYEIGGYK 119
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
K + +D+ AA LIL+ ++
Sbjct: 120 KLKQNPIDAYAAELILKSFFEQ 141
>gi|332307597|ref|YP_004435448.1| Holliday junction resolvase YqgF [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332174926|gb|AEE24180.1| Holliday junction resolvase YqgF [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 143
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P + + I+GL
Sbjct: 6 QRTVLAFDFGTKSIGVAVGQEVTGTASPLDAINAVDGIPNWDIVAKVFEQWQPDLAIVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GS + + F + + + K VP DERLTTV A+ L +M +K +K
Sbjct: 66 PLNMDGSFQQVTFAAKKFANRL-NAKYRVPIETVDERLTTVDAKARLFEMGGFKKLDKRK 124
Query: 136 VDSIAAALILQEVLDR 151
+DS +A LI + +++
Sbjct: 125 IDSASACLIFESWVEQ 140
>gi|315181242|gb|ADT88156.1| Holliday junction resolvase-like protein [Vibrio furnissii NCTC
11218]
Length = 141
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P E+ I +IGL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPDLLVIGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + F + R +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKALETITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARSELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
VD +A +IL+ +R+
Sbjct: 121 NVDCQSAVIILESWFERL 138
>gi|226306473|ref|YP_002766433.1| Holliday junction resolvase [Rhodococcus erythropolis PR4]
gi|229493502|ref|ZP_04387287.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|259495711|sp|C0ZZA9|RUVX_RHOE4 RecName: Full=Putative Holliday junction resolvase
gi|226185590|dbj|BAH33694.1| putative Holliday junction resolvase [Rhodococcus erythropolis PR4]
gi|229319463|gb|EEN85299.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length = 177
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIA 69
+ID+G+ RIG+A SDP A P + R K +++ ++
Sbjct: 16 PGRGRRIAIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRIIAIVSEYEAV 75
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
I+GLP + G +G AF + +P DERLTTV+A + L + V
Sbjct: 76 EVIVGLPQTLRGEQGKAAGIATAFAKRLQRAVEPIPVRLSDERLTTVTAARNLRESGVKA 135
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
+ + +D AA ILQ LD S
Sbjct: 136 RGQRPMIDQAAAVEILQGWLDERS 159
>gi|281420285|ref|ZP_06251284.1| putative Holliday junction resolvase [Prevotella copri DSM 18205]
gi|281405587|gb|EFB36267.1| putative Holliday junction resolvase [Prevotella copri DSM 18205]
Length = 137
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I SID G KR GLA++DP + A+ + + + ++I E + +IG P+
Sbjct: 2 RILSIDYGKKRTGLAVTDPLQIIANGLATV---STHELFTYIETYIQKEQVERIVIGKPM 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ--- 134
NG + F + +P ++DER T+V A + +ID V +K R +
Sbjct: 59 QPNGQPSENLARVENFYNRWRKAHPEIPIEYYDERFTSVLAHRAMIDGGVKKKVRKENKG 118
Query: 135 KVDSIAAALILQEVL 149
VD I+A +ILQ+ L
Sbjct: 119 LVDEISATIILQDYL 133
>gi|302189825|ref|ZP_07266498.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
syringae 642]
Length = 146
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + + + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSDMSARAEKFSRRL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143
>gi|114327615|ref|YP_744771.1| endonuclease involved in recombination [Granulibacter bethesdensis
CGDNIH1]
gi|114315789|gb|ABI61849.1| endonuclease involved in recombination [Granulibacter bethesdensis
CGDNIH1]
Length = 168
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MS+ + DL L NQ + ID G++ IG+A+SD A P + R K+ A E+
Sbjct: 3 MSLFNVPDLQSRLSRNQRLLGIDPGSRIIGIALSDVLLGIASPYGSIRRGKLRVNAEEIA 62
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ E IIGLPL+M+GS GP + R + + D +P WDER T+ Q
Sbjct: 63 AIARKEEAGGMIIGLPLSMDGSFGPAAQAARDWAIALSDA-TGLPAALWDERETSSRVHQ 121
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+LI ++ RK+R VD +AAA++LQ LD +
Sbjct: 122 LLISSADLGRKRRAAVVDKMAAAVMLQSALDALP 155
>gi|237798181|ref|ZP_04586642.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|237806086|ref|ZP_04592790.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331021033|gb|EGI01090.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331027199|gb|EGI07254.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 146
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + IT A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALITEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + + + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSDMSARAEKFSRRL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143
>gi|118470819|ref|YP_887343.1| Holliday junction resolvase-like protein [Mycobacterium smegmatis
str. MC2 155]
gi|226731631|sp|A0QWQ5|RUVX_MYCS2 RecName: Full=Putative Holliday junction resolvase
gi|118172106|gb|ABK73002.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
Length = 170
Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 60/141 (42%), Gaps = 3/141 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT---ALELLSFITTENIAA 70
ID+GT RIG+A SDP A P + R K +T L + +
Sbjct: 16 PGRGRRIGIDVGTVRIGVASSDPDGILATPVETVARDKRDKTGKHVRRLAALVKEYEAVE 75
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
I+GLP + H + R P DERLTTVSAQ+ L + V +
Sbjct: 76 VIVGLPRTLGDRASASAHDAVDVAEQLARRIAPTPVRLADERLTTVSAQRSLREAGVRAR 135
Query: 131 KRIQKVDSIAAALILQEVLDR 151
+ +D +AA ILQ LD+
Sbjct: 136 GQKAVIDQVAAVGILQGWLDQ 156
>gi|71737640|ref|YP_272778.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|146325590|sp|Q48P91|RUVX_PSE14 RecName: Full=Putative Holliday junction resolvase
gi|71558193|gb|AAZ37404.1| conserved hypothetical protein TIGR00250 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320321976|gb|EFW78072.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330919|gb|EFW86893.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 146
Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + + + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRNNPVD 125
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143
>gi|254784479|ref|YP_003071907.1| Holliday junction resolvase-like protein [Teredinibacter turnerae
T7901]
gi|237687105|gb|ACR14369.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
Length = 146
Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ + I + D GT+ IG+A+ + A P L K +L + ++
Sbjct: 5 RSEETILAFDFGTRSIGVAVGQTLTQSASELPTLKAKDGIPDWQQLEQLFSDWRPNLVVV 64
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+NM+GSE R F + + + + F+DERLTT +A++ R
Sbjct: 65 GLPVNMDGSEMEMTRRARKFGNRL-NGRFNQTVAFFDERLTTRAAKEEAAAHGHRGNYRA 123
Query: 134 QKVDSIAAALILQEVL 149
+ VDSIAA LIL+ +
Sbjct: 124 KPVDSIAARLILEGWM 139
>gi|217967412|ref|YP_002352918.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724]
gi|226725514|sp|B8E227|RUVX_DICTD RecName: Full=Putative Holliday junction resolvase
gi|217336511|gb|ACK42304.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724]
Length = 141
Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +ID G K IGLAISDP R A K L I N++ ++G P+
Sbjct: 2 RVLAIDWGEKYIGLAISDPLRIIAQGLDVWEIKDEEDFVNRLKKLIKEYNVSEIVLGYPI 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
++ G E + +V I V +P F DER TT+ A+++L++ ++ R+ R +
Sbjct: 62 SLRGHENEKTKKIE-YVAERIKTVVNLPIKFVDERFTTMEAERVLLEGDIKRRDRKLLKN 120
Query: 138 SIAAALILQEVLDRIS 153
AA +ILQ+ LD +S
Sbjct: 121 KQAAVIILQKYLDSLS 136
>gi|109897479|ref|YP_660734.1| Holliday junction resolvase YqgF [Pseudoalteromonas atlantica T6c]
gi|109699760|gb|ABG39680.1| Holliday junction resolvase YqgF [Pseudoalteromonas atlantica T6c]
Length = 143
Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P + + ++GL
Sbjct: 6 QRTVLAFDFGTKSIGVAVGQEVTGTASPLDAIKAVDGIPNWDVVAKVFEQWQPDLALVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+ + + F + + K VP DERLTTV A+ L +M +K QK
Sbjct: 66 PLNMDGTFQQVTFAAKKFGNRL-SAKYRVPVETVDERLTTVDAKARLFEMGGFKKLDKQK 124
Query: 136 VDSIAAALILQEVLDR 151
+DS +A LI + +++
Sbjct: 125 IDSASACLIFESWVEQ 140
>gi|309810777|ref|ZP_07704583.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185]
gi|308435257|gb|EFP59083.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185]
Length = 170
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFIIGLPLN 78
+D+GT R+G+A+SDP A P L R + + ++GLPLN
Sbjct: 7 LGVDVGTVRVGVAVSDPDGIMATPVETLARASASDKDVQRVAELADDARALEVVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M G + + RA+ + + + + + DERLT+VSA Q L V+ ++ Q VD
Sbjct: 67 MKGEDTASTQAARAWANTLKRLRPALRVILVDERLTSVSAHQSLHASGVAGREHRQHVDQ 126
Query: 139 IAAALILQEVLD 150
AA LILQ L+
Sbjct: 127 QAAVLILQAALE 138
>gi|300726437|ref|ZP_07059885.1| conserved hypothetical protein [Prevotella bryantii B14]
gi|299776285|gb|EFI72847.1| conserved hypothetical protein [Prevotella bryantii B14]
Length = 139
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I SID G KR GLA++DP + A+ + + L ++ E + I+G
Sbjct: 1 MGRILSIDYGKKRTGLAVTDPMQIIANGLTTVSTVDL---WDFLQNYCKKEGVERIIMGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P NG + F + +P ++DER T+V A + +ID V +K R
Sbjct: 58 PTQPNGLPSENMGRVENFYNRWHKAHPEIPIEYYDERFTSVIAHRAMIDGGVKKKVRREN 117
Query: 133 IQKVDSIAAALILQEVLDRISF 154
VD ++A +IL++ + +
Sbjct: 118 KGLVDEVSATIILEDWMSSHRY 139
>gi|186477077|ref|YP_001858547.1| Holliday junction resolvase-like protein [Burkholderia phymatum
STM815]
gi|226725497|sp|B2JFD3|RUVX_BURP8 RecName: Full=Putative Holliday junction resolvase
gi|184193536|gb|ACC71501.1| Holliday junction resolvase YqgF [Burkholderia phymatum STM815]
Length = 151
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A P L + + I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRSARPLVVLQNRNREYRFEAVGKLIDEWKPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ R + F + + + + +P + DER ++V A+ + S ++
Sbjct: 67 LPMHPDGTPHERTQLAKRFGNQL-NGRFNLPVTWIDERYSSVEAEAGIR----SGTRQAG 121
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA +ILQ+ LD +S
Sbjct: 122 MLDAEAACIILQQYLDGLS 140
>gi|66043751|ref|YP_233592.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
syringae B728a]
gi|257483597|ref|ZP_05637638.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289624696|ref|ZP_06457650.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289676346|ref|ZP_06497236.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
syringae FF5]
gi|298485002|ref|ZP_07003099.1| Putative Holliday junction resolvase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|75503697|sp|Q4ZZ68|RUVX_PSEU2 RecName: Full=Putative Holliday junction resolvase
gi|63254458|gb|AAY35554.1| Conserved hypothetical protein 250 [Pseudomonas syringae pv.
syringae B728a]
gi|298160412|gb|EFI01436.1| Putative Holliday junction resolvase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330865802|gb|EGH00511.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330886262|gb|EGH20163.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
mori str. 301020]
gi|330899356|gb|EGH30775.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330951383|gb|EGH51643.1| Holliday junction resolvase-like protein [Pseudomonas syringae Cit
7]
gi|330972638|gb|EGH72704.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aceris str. M302273PT]
gi|330977061|gb|EGH77021.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|330984650|gb|EGH82753.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009672|gb|EGH89728.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 146
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + + + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143
>gi|118597218|sp|Q6MD02|RUVX_PARUW RecName: Full=Putative Holliday junction resolvase
Length = 150
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFI----- 63
+++ I ID G RIGLA SD + A P + KK QT ++LL I
Sbjct: 1 MENKPKPSRILGIDFGMSRIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCE 60
Query: 64 -TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I +IGLPL M+G G + F ++ + +P WDERLTTV A++ L
Sbjct: 61 TQKCEIEEIVIGLPLMMSGRTGFLADEVKHFAQ-LLQQLTPIPIRLWDERLTTVQAERSL 119
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDR 151
+ ++RKKR + VD ++A++ILQ LD
Sbjct: 120 RESQLTRKKRSKVVDIVSASIILQSYLDS 148
>gi|260912123|ref|ZP_05918679.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260633729|gb|EEX51863.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 138
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I S+D G KR G+A++DP + + + + LL +I E + ++G
Sbjct: 1 MARILSVDYGKKRTGIAVTDPLQIICNGLVTVSSSTLVDF---LLDYIQKEEVELIVVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P NG + + FV +P V++DER T+V A + +ID + +K R
Sbjct: 58 PKQTNGQPSENLERVKQFVARWKKVCPTIPIVYYDERFTSVLAHRAMIDGGLKKKARQDK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD I+A +ILQ L+
Sbjct: 118 ALVDEISATIILQSYLESKR 137
>gi|238063897|ref|ZP_04608606.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149]
gi|237885708|gb|EEP74536.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149]
Length = 153
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL------ELLSFITTENIAAFII 73
+D+G R+G+A SDP A P L R T EL++ I ++
Sbjct: 10 LGVDVGQVRVGVARSDPHGVLATPLVTLARDLTTADDAVPSDMAELVALIAEHECVEVVV 69
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+N+ G GP + +A+ + D VP DER++TV A + L + V K+R
Sbjct: 70 GLPINLAGQHGPAARNVKAYADRLADVIAPVPVTLTDERMSTVVASRRLAEGGVRGKRRR 129
Query: 134 QKVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 130 AVVDQAAAVEILQSWLD 146
>gi|22299872|ref|NP_683119.1| Holliday junction resolvase-like protein [Thermosynechococcus
elongatus BP-1]
gi|32130026|sp|Q8DGI8|RUVX_THEEB RecName: Full=Putative Holliday junction resolvase
gi|22296057|dbj|BAC09881.1| tll2329 [Thermosynechococcus elongatus BP-1]
Length = 151
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +DLG KRIG+A D + A + R+ +L + I+GLP
Sbjct: 3 SVLGLDLGRKRIGVAGCDRLGQLATGITTIYRRNFASDVAQLRRICQERGVEKLIVGLPY 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
++G G + + I + +P + DERLT+ A++IL S + VD
Sbjct: 63 TLDGQLGSQARQVQHLAEK-IGAALNLPVEYIDERLTSFQAEEILKQRRRSPRHHKDLVD 121
Query: 138 SIAAALILQEVLDRIS 153
IAAALILQ+ LD S
Sbjct: 122 QIAAALILQQWLDARS 137
>gi|317122056|ref|YP_004102059.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
12885]
gi|315592036|gb|ADU51332.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
12885]
Length = 326
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG++ IG+AISDP A P L R+ + A ++ + ++G P
Sbjct: 2 RWLGLDLGSRVIGVAISDPEGIVARPLGSLPRRTDAENAAQVADLVRRHGAGGVVVGWPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVP-FVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
++G+ GP + F + R+ VP WDERL+TV A+++LI ++SR++R Q +
Sbjct: 62 RLDGTRGPEAEAAERFADAL--REAGVPRVTLWDERLSTVEAERVLIAADLSRRRRKQII 119
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
D +AA +ILQ L G
Sbjct: 120 DRMAATVILQAFLQSQRRQRDGGG 143
>gi|34499365|ref|NP_903580.1| Holliday junction resolvase-like protein [Chromobacterium violaceum
ATCC 12472]
gi|62901005|sp|Q7NR74|RUVX_CHRVO RecName: Full=Putative Holliday junction resolvase
gi|34105215|gb|AAQ61571.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 137
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D G +RIG+A+ D HP + + + I ++GLP++
Sbjct: 1 MAFDFGERRIGVAVGDTILGIPHPLATIDTAVTDERFAAIARLIEEWQPRQLVVGLPMHP 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVDS 138
+G E +R F + + R +P DER T+V A+Q+L + V + +K+ +D
Sbjct: 61 DGEEHELSALSRRFANRLKGR-FGLPVWLVDERYTSVIAEQLLEEAGVKKGRKQKPALDQ 119
Query: 139 IAAALILQEVLDR 151
+AA IL ++
Sbjct: 120 VAAQAILAGWFEQ 132
>gi|148284294|ref|YP_001248384.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi
str. Boryong]
gi|167012743|sp|A5CCV6|RUVX_ORITB RecName: Full=Putative Holliday junction resolvase
gi|146739733|emb|CAM79564.1| holliday junction resolvase [Orientia tsutsugamushi str. Boryong]
Length = 157
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I I + +++ + I ID G K++G+AIS+ A P ++ + ++
Sbjct: 1 MIINSISEFLQAADIKKQILGIDFGEKKVGVAISNIEHTVAMPLQTILATNQDR-VNKIQ 59
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
NI A +IGLP ++G+E + H + F + + ++ + +P DERLT+ +A
Sbjct: 60 EIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFANKLANKLL-LPIFLCDERLTSKAANN 118
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+L N+ RK R D +AA++IL+ L R+ +S
Sbjct: 119 LLKIGNIKRKVRNAIDDRVAASIILEGALKRMQNSKS 155
>gi|282889573|ref|ZP_06298114.1| hypothetical protein pah_c002o006 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500496|gb|EFB42774.1| hypothetical protein pah_c002o006 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 155
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTEN------IA 69
+ I S+D G RIG+AISD + A + KKV +T +L+ I I
Sbjct: 7 KRIVSLDYGLARIGIAISDESQTIASSLKTVAAEKKVERTVAKLVEEINAHQQRLACEIE 66
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++GLPL M+G +G + FV + +P V WDERLTTV A++ L + + +R
Sbjct: 67 EIVVGLPLLMSGKKGFQADEVLHFVE-LFKAATPIPIVTWDERLTTVQAERALREGSFNR 125
Query: 130 KKRIQKVDSIAAALILQEVLD 150
KKR + +D++AA LILQ LD
Sbjct: 126 KKRSKVIDAVAAVLILQNYLD 146
>gi|291544813|emb|CBL17922.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. 18P13]
Length = 140
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G R GLA D A P + + ++G P N
Sbjct: 3 ILAVDFGDARTGLACCDRSELLASPAGVISETDFEVCIQKTAEAAREHRAEQIVVGYPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G R F + + V WDER TTVSA + L N KKR VD+
Sbjct: 63 MNGTIGERAEKCALFAEKL-RTLAGIETVLWDERCTTVSAHRYLNQTNTRGKKRKAVVDA 121
Query: 139 IAAALILQEVL 149
+AA +IL+ L
Sbjct: 122 VAATIILESYL 132
>gi|300781085|ref|ZP_07090939.1| Holliday junction resolvase family protein [Corynebacterium
genitalium ATCC 33030]
gi|300532792|gb|EFK53853.1| Holliday junction resolvase family protein [Corynebacterium
genitalium ATCC 33030]
Length = 167
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 6/141 (4%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENIA 69
P + I ID+GT RIG+A SD A P + R + LL I+ +
Sbjct: 15 PGRRI-GIDVGTVRIGVASSDRDGLLATPVETVERVTGFKDRDGADIDRLLDIISEYDAV 73
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++GLP ++ G+ V + + R VP F DERLTTV A L V+
Sbjct: 74 EVVVGLPRDLKGNGSSSVKHAKEIAFRIGRRNPDVPVRFADERLTTVEATNALRLSGVNA 133
Query: 130 KKRIQKVDSIAAALILQEVLD 150
+ +D AA ILQ LD
Sbjct: 134 RDGRAVIDQAAAVAILQSWLD 154
>gi|260654149|ref|ZP_05859639.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33
E1]
gi|260631134|gb|EEX49328.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33
E1]
Length = 141
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ++DLGT RIG+A++DP FA +L + ++GL
Sbjct: 1 MKRIIALDLGTVRIGVAVTDPLGTFAQGVECWDAASGW--MGKLGELMAQYGTDRLLLGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +G+EG R + R V FWDER T+ AQ +I+ ++SR+KR K
Sbjct: 59 PRKEDGTEGEMAAKVRETAGRIAKRYPQVQIRFWDERYTSRVAQSAMIEGDLSRRKRKGK 118
Query: 136 VDSIAAALILQEVLD 150
VD IAA+LILQ +D
Sbjct: 119 VDQIAASLILQNFID 133
>gi|325981453|ref|YP_004293855.1| Holliday junction resolvase YqgF [Nitrosomonas sp. AL212]
gi|325530972|gb|ADZ25693.1| Holliday junction resolvase YqgF [Nitrosomonas sp. AL212]
Length = 161
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I + D G KR+G+AI + AHP + + + + + I T F++G+
Sbjct: 20 EGSILAFDFGKKRVGVAIGNTALGVAHPLITIDSEVTNKRFVMIAQLIDTWQPVLFVVGM 79
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL+ +G ++ F + R +P V DER T+ A IL + V +++
Sbjct: 80 PLHSDGIVHELTQLSQRFARRLAGR-FNIPVVMQDERYTSQIASTILREAGVVGREQKSV 138
Query: 136 VDSIAAALILQEVLDR 151
+D IAA ILQ D
Sbjct: 139 LDQIAAQQILQSFFDE 154
>gi|269792642|ref|YP_003317546.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100277|gb|ACZ19264.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 142
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++DLG RIG+A+SDP R FA P L ++ L++ + ++ ++GL
Sbjct: 5 MGRVMALDLGEVRIGVALSDPSRSFASPLEVLKMEEGWP--LKVKELVERNSVTLIVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ +GS GP V ++ + V V DER TT AQ+ L++ +V R+KR K
Sbjct: 63 PIRTDGSSGPEVQRVMGWLEELKAVVQQVEIVTVDERFTTSIAQRFLLEGDVRREKRKGK 122
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AAAL+LQ+ L+
Sbjct: 123 VDKVAAALMLQDYLNSRR 140
>gi|295675689|ref|YP_003604213.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1002]
gi|295435532|gb|ADG14702.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1002]
Length = 146
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A P + + L I A ++G
Sbjct: 7 REATLLAFDYGVKRIGVAVGNSLTRRARPLVVVQNRSKEYRFEALGKLIAEWKPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ R + F + + + + +P + DER ++V A+ + N R
Sbjct: 67 LPMHPDGTPHERTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAEAEIRAGN----ARAD 121
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASIILQQYLDELS 140
>gi|271967371|ref|YP_003341567.1| endonuclease involved in recombination-like protein
[Streptosporangium roseum DSM 43021]
gi|270510546|gb|ACZ88824.1| endonuclease involved in recombination-like protein
[Streptosporangium roseum DSM 43021]
Length = 163
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 2/141 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G+ RIG+A SDP A P + R + L + ++GLP ++
Sbjct: 9 LGVDVGSVRIGVARSDPSGLLATPVETVRRGRG--DLDRLAEIAAEYEVVEIVVGLPTSL 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G EG + R F + R +P +DERLTTV+AQQ L V K + VD
Sbjct: 67 SGREGQAAEAARDFATRISLRLAPIPVRLFDERLTTVTAQQGLRASGVKAKNQRAVVDQA 126
Query: 140 AAALILQEVLDRISFLESSKG 160
AA ++LQ LD G
Sbjct: 127 AAIVLLQAALDAERATGRPPG 147
>gi|89890525|ref|ZP_01202035.1| endonuclease involved in recombination repair [Flavobacteria
bacterium BBFL7]
gi|89517440|gb|EAS20097.1| endonuclease involved in recombination repair [Flavobacteria
bacterium BBFL7]
Length = 139
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++DP + A + +++ L ++ TE++ +IG
Sbjct: 1 MSRILAIDYGKKRTGIAVTDPMQIIASGLTTVATHELSVF---LEKYLNTEDVETIVIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P M+ ++ AF + ++ + DER T+ A Q +ID +S+ KR K
Sbjct: 58 PKQMDYTDSELGGVINAFAKALQEKYPAITIERVDERFTSKMAFQTMIDSGLSKSKRRNK 117
Query: 136 --VDSIAAALILQEVLDRIS 153
VD IAA +ILQ +DR S
Sbjct: 118 ALVDEIAATIILQTYMDRKS 137
>gi|188996418|ref|YP_001930669.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1]
gi|226695309|sp|B2V842|RUVX_SULSY RecName: Full=Putative Holliday junction resolvase
gi|188931485|gb|ACD66115.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1]
Length = 145
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G KRIG+A+SDP A P F++ + ++ I I+ +IGL
Sbjct: 1 MSRILGLDIGLKRIGVAVSDPFGVTATPLEFIL--NDEKVFEKINDLIKNYKISKIVIGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
PL + G EG + T+ FV N+ + + +F DER T+ A++ L+ +K + +
Sbjct: 59 PLTLKGEEGEQARYTKEFVENLKNHIPQDIEIIFVDERFTSSLAEKTLLQ--TKKKNKKE 116
Query: 135 KVDSIAAALILQEVLDRISF 154
K+DS++A ILQ LDR+SF
Sbjct: 117 KIDSLSAVFILQTYLDRLSF 136
>gi|254423308|ref|ZP_05037026.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. PCC
7335]
gi|196190797|gb|EDX85761.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. PCC
7335]
Length = 144
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG KRIG+A D A L + + L + I ++ ++GLP M
Sbjct: 5 LGLDLGAKRIGVAGCDRTGLIATGLTTLYKTSFESIIVPLETLIQARSVEVLVVGLPYTM 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G G + + F H + + + +P F DERLT+ A+Q+L+ S + +D
Sbjct: 65 DGQIGFQAKKIQKFAHRL-SKVLGLPVEFVDERLTSFQAEQMLLAERRSLTNCKELIDRK 123
Query: 140 AAALILQEVLDRIS 153
AAA+ILQ+ LD
Sbjct: 124 AAAIILQQWLDERR 137
>gi|221195852|ref|ZP_03568905.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
gi|221184326|gb|EEE16720.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
Length = 140
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D+G R+G+A+SDP R A P L ++V A S + + G PL
Sbjct: 2 RVLALDIGDARVGIAVSDPDGRIASPVCVLPAQEVFSHARSFRSVLEDWEPELLVCGKPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
++G EGP+ + DR +P DERL++ A++IL +S K KVD
Sbjct: 62 TLSGEEGPQAQKIMEQAKKIADR-TGLPVELTDERLSSSEAKRILRAQGLSEKTMRGKVD 120
Query: 138 SIAAALILQEVLDR 151
+AA+L LQ LDR
Sbjct: 121 MVAASLFLQAWLDR 134
>gi|307543649|ref|YP_003896128.1| Holliday junction resolvase YqgF [Halomonas elongata DSM 2581]
gi|307215673|emb|CBV40943.1| Holliday junction resolvase YqgF [Halomonas elongata DSM 2581]
Length = 143
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + I D GT+RIG+A+ + R A L + + + F+
Sbjct: 1 MSSQRLILGFDFGTRRIGVAVGNELTRSARALDPLPARDGIPDWTRVARLVDEWRPDLFV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+G+E R F + R +P DER +T A+ I D R
Sbjct: 61 VGLPLNMDGTESDMSTRARKFGKRLFGR-YGIPCEMADERGSTREAKAIARDAGHRGNYR 119
Query: 133 IQKVDSIAAALILQEVL 149
VD +AA LIL+ L
Sbjct: 120 DDGVDGLAAVLILEGWL 136
>gi|108799314|ref|YP_639511.1| Holliday junction resolvase-like protein [Mycobacterium sp. MCS]
gi|119868430|ref|YP_938382.1| Holliday junction resolvase-like protein [Mycobacterium sp. KMS]
gi|122977019|sp|Q1B9H9|RUVX_MYCSS RecName: Full=Putative Holliday junction resolvase
gi|167012737|sp|A1UFI4|RUVX_MYCSK RecName: Full=Putative Holliday junction resolvase
gi|108769733|gb|ABG08455.1| Holliday junction resolvase YqgF [Mycobacterium sp. MCS]
gi|119694519|gb|ABL91592.1| Holliday junction resolvase YqgF [Mycobacterium sp. KMS]
Length = 169
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFI 72
ID+G+ R+G+A SDP A P + R+K + L +T +
Sbjct: 17 PGRGRRIGIDVGSVRVGVATSDPDGVLATPVETVRREKSSDRHVRRLAQLVTELEAVEVV 76
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP + GP H + R VP DERLTTVSAQ+ L + V K +
Sbjct: 77 VGLPRTLADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVSAQRSLREAGVRAKGQ 136
Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
+D +AA ILQ LD+ ++ G
Sbjct: 137 RAMIDQVAAVGILQSWLDQRRAALAAPG 164
>gi|162148752|ref|YP_001603213.1| Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl
5]
gi|209545482|ref|YP_002277711.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus
PAl 5]
gi|189046098|sp|A9HRJ3|RUVX_GLUDA RecName: Full=Putative Holliday junction resolvase
gi|161787329|emb|CAP56923.1| putative Holliday junction resolvase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533159|gb|ACI53096.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus
PAl 5]
Length = 154
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + + + L +Q + +D G K IGLA+SD A P L R K++ A E+
Sbjct: 1 MPLFNMHQIRGQLGRDQRLLGLDPGQKTIGLALSDVSLMLASPYGALRRGKLSVVAAEIR 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
E + + GLPL+M+GS GP + R ++ ++ ++ V +P WDERL++ + +
Sbjct: 61 RIAAREGVGGLVSGLPLSMDGSFGPAAQAARDWMISLSEQ-VGLPAAMWDERLSSSAVNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
+LI D +++R++R + VD +AA+ +LQ LD
Sbjct: 120 MLIQDADMTRQRRAELVDKLAASYMLQGALD 150
>gi|221133772|ref|ZP_03560077.1| Holliday junction resolvase-like protein [Glaciecola sp. HTCC2999]
Length = 137
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D GTK IG+A+ A P + + A ++GL
Sbjct: 1 MSTYLAFDFGTKSIGVAVGQTITGTAQPLAAIKANDGIPNWDTITELHAQWQPTAMLVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F I + DERLTT A+ L ++ +K K
Sbjct: 61 PLNMDGTEQEMTLRARKFGRR-ISARCKSQVFEVDERLTTTDAKARLFELGGYKKLSKDK 119
Query: 136 VDSIAAALILQEVLDR 151
VDS++A +I + +
Sbjct: 120 VDSVSACVIFEAWCES 135
>gi|223986206|ref|ZP_03636224.1| hypothetical protein HOLDEFILI_03534 [Holdemania filiformis DSM
12042]
gi|223961820|gb|EEF66314.1| hypothetical protein HOLDEFILI_03534 [Holdemania filiformis DSM
12042]
Length = 139
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73
+ I +DLG++ +G+A+SDP A + F++
Sbjct: 1 MERIMGLDLGSRTLGIAVSDPLGMIARTVETFRFADDDYDAACARAVQLAKELGAVKFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +MNG G R + F + + +P + DERLTT +A++ILI +VSRKKR
Sbjct: 61 GLPKHMNGDVGIRGQISLDFKAKL-EAACGLPVILQDERLTTAAAERILISADVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D +AA ILQ LD+
Sbjct: 120 AVIDQMAAVQILQSYLDQKR 139
>gi|192359483|ref|YP_001980608.1| hypothetical protein CJA_0084 [Cellvibrio japonicus Ueda107]
gi|190685648|gb|ACE83326.1| conserved hypothetical protein TIGR00250 [Cellvibrio japonicus
Ueda107]
Length = 143
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GTK IG+A R A P L + E+ + + T ++GLP
Sbjct: 3 KTLLAFDYGTKNIGVATGQTIIRSASSLPGLRARDGVPDWNEIEALLKTWQPDLVLVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE R F N + V DERL++ A+ +++ SR R V
Sbjct: 63 LNMDGSESELSARARKFA-NRTQGRFGVKVEMVDERLSSFEAKGEVMERGGSRDYRHNPV 121
Query: 137 DSIAAALILQEVLDR 151
DSIAA LIL+ L+R
Sbjct: 122 DSIAARLILEAWLER 136
>gi|158333266|ref|YP_001514438.1| Holliday junction resolvase-like protein [Acaryochloris marina
MBIC11017]
gi|189046084|sp|B0C512|RUVX_ACAM1 RecName: Full=Putative Holliday junction resolvase
gi|158303507|gb|ABW25124.1| holliday junction resolvase, putative [Acaryochloris marina
MBIC11017]
Length = 144
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 3/145 (2%)
Query: 16 NQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
Q I +DLG +RIG+A D A + R T+ L + + ++
Sbjct: 1 MQRISALGLDLGHRRIGVAGCDGTGLIATGLTTIRRTSFTKDMEILRQIVVDRQVKTLVV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP M G G + T+ + + +P F DERLT+ A+ ++ + ++ ++
Sbjct: 61 GLPYTMKGEVGTQAQKTQKLAKRIAKA-LDLPLDFIDERLTSHEAESMMREQRINPAEQK 119
Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
+D AAALILQ LD+ +L S+
Sbjct: 120 GMIDRKAAALILQRWLDQKPWLSST 144
>gi|77163898|ref|YP_342423.1| Holliday junction resolvase YqgF [Nitrosococcus oceani ATCC 19707]
gi|254435808|ref|ZP_05049315.1| conserved hypothetical protein TIGR00250 [Nitrosococcus oceani
AFC27]
gi|146325583|sp|Q3JE53|RUVX_NITOC RecName: Full=Putative Holliday junction resolvase
gi|76882212|gb|ABA56893.1| Holliday junction resolvase YqgF [Nitrosococcus oceani ATCC 19707]
gi|207088919|gb|EDZ66191.1| conserved hypothetical protein TIGR00250 [Nitrosococcus oceani
AFC27]
Length = 152
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 14 KPNQP--IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
P++P + D G + IG+A+ A+P L + ++ I N
Sbjct: 9 SPSKPRIVLGFDFGLRYIGVAVGQEVTHSANPLTTLKAHEGNPDWNQITQLIRQWNPDLL 68
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
I+GLPLNM+ SE + R F H + R + + DERL+TV A++ L + S
Sbjct: 69 IVGLPLNMDQSEQFLTKAARRFGHRLHGR-YGLAVEWVDERLSTVEARERLN-IKSSASG 126
Query: 132 RIQKVDSIAAALILQEVL 149
R Q +D +AA ILQ L
Sbjct: 127 RRQGIDQMAAQCILQTWL 144
>gi|257452889|ref|ZP_05618188.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_5R]
gi|257466746|ref|ZP_05631057.1| DNA integration/recombination/invertion protein [Fusobacterium
gonidiaformans ATCC 25563]
gi|315917895|ref|ZP_07914135.1| DNA integration/recombination/inversion protein [Fusobacterium
gonidiaformans ATCC 25563]
gi|317059431|ref|ZP_07923916.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
3_1_5R]
gi|313685107|gb|EFS21942.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
3_1_5R]
gi|313691770|gb|EFS28605.1| DNA integration/recombination/inversion protein [Fusobacterium
gonidiaformans ATCC 25563]
Length = 139
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIG+A SD A P + R+K+ ++ EN + ++G+P
Sbjct: 3 KKYLALDVGDVRIGVAKSDIMGIIASPLETIDRRKMKP-VKRIIELCEQENTKSIVVGIP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
+++GSE + R F+H + V DER TTV+A QIL +MN ++ +
Sbjct: 62 KSLDGSEKRQAEKVRIFIHALKSAIPGVEIFEVDERFTTVTADQILTEMNRKGALEKRKV 121
Query: 136 VDSIAAALILQEVLD 150
VD +AA+LILQ+ L+
Sbjct: 122 VDKVAASLILQQYLN 136
>gi|257462580|ref|ZP_05626990.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
D12]
gi|317060232|ref|ZP_07924717.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D12]
gi|313685908|gb|EFS22743.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D12]
Length = 139
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIG+A SDP A P + R+K + ++ EN + ++G+P
Sbjct: 3 KKYLALDVGDVRIGVAKSDPLGMLAIPLETIDRRK-EKPVKRIMQLCEEENTKSIVVGIP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
+++GSE + R F+H + V + DER TTV+A +IL +MN ++ +
Sbjct: 62 KSLDGSEKRQAEKVRIFIHALKSAIPGVEILEVDERFTTVTADRILTEMNRKGALEKRKV 121
Query: 136 VDSIAAALILQEVLD 150
VD +AA+LILQ+ L+
Sbjct: 122 VDKVAASLILQQYLN 136
>gi|84496691|ref|ZP_00995545.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649]
gi|84383459|gb|EAP99340.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649]
Length = 161
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENIAAFIIGLPL 77
D+GT R+G+A+SDP A P L R + E+++ I+GLP
Sbjct: 2 DVGTVRVGVAVSDPSGMLATPHATLTRIWPDAETPGDDIAEIVALSAERAALEVIVGLPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+++G EGP + R + + R V DERLT+VSA + L D V+ +++ VD
Sbjct: 62 SLSGDEGPSAEAARKYAAELARRVAPVGVRLVDERLTSVSAHRALRDSGVAGRRQRAVVD 121
Query: 138 SIAAALILQEVLDR 151
AA LILQ LD
Sbjct: 122 QAAAVLILQAALDE 135
>gi|260773599|ref|ZP_05882515.1| putative Holliday junction resolvase [Vibrio metschnikovii CIP
69.14]
gi|260612738|gb|EEX37941.1| putative Holliday junction resolvase [Vibrio metschnikovii CIP
69.14]
Length = 141
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P E+ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + R +P DERL+T A+ L +
Sbjct: 62 PTDLHGKDLDTITPRAKKFANRLHGR-FGLPVELHDERLSTAEARSELFAHGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +A +IL+ +R
Sbjct: 121 NIDCQSAVVILESWFER 137
>gi|124007537|ref|ZP_01692242.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123987020|gb|EAY26776.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 138
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +ID GTKR+GLA++DP + A + K V Q L + E I F++G+P
Sbjct: 3 RIVAIDYGTKRVGLAVTDPLKIIATALDTVHSKDVIQF---LKDYHEQEGIELFVVGMPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
++G+E AF++ + DER T+ A +I ++K R +K
Sbjct: 60 RLDGTESHATKHVEAFLNLLKKNFPDTDIETHDERFTSKIALNAMIAGGTTKKYRREKGN 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D ++A +ILQ L+++
Sbjct: 120 IDKVSAVVILQSYLEKMQ 137
>gi|86157658|ref|YP_464443.1| Holliday junction resolvase-like protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|146325549|sp|Q2IQC1|RUVX_ANADE RecName: Full=Putative Holliday junction resolvase
gi|85774169|gb|ABC81006.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
2CP-C]
Length = 137
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG RIGLA++D R A +VR+ + + + ++GLPL
Sbjct: 2 RTLGVDLGRVRIGLAVADEILRTARAVTTVVRRGEAEDLAAIAEVARDYEVTRAVVGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+EGP R F + + + VP +DERL++ A+ L VS + + +VD
Sbjct: 62 NMDGTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGVSARDQRGQVD 120
Query: 138 SIAAALILQEVLDRIS 153
+ AAA+ILQ LDR +
Sbjct: 121 AEAAAVILQGWLDRRA 136
>gi|288928224|ref|ZP_06422071.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str.
F0108]
gi|288331058|gb|EFC69642.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str.
F0108]
Length = 138
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I S+D G KR G+A++DP + + + + LL + E + ++G
Sbjct: 1 MARILSVDYGQKRTGIAVTDPLQIICNGLVTVSSSTLVDF---LLDYTKREEVELIVVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P NG + R FV +P V++DER T+V A + +ID + +K R
Sbjct: 58 PKQTNGQPSENLERVRQFVARWKKACPTIPVVYYDERFTSVLAHRAMIDGGLKKKARQDK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD I+A +ILQ L+
Sbjct: 118 ALVDEISATIILQSYLESKR 137
>gi|319949823|ref|ZP_08023842.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4]
gi|319436514|gb|EFV91615.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4]
Length = 151
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 5/145 (3%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL----ELLSFITTE 66
+ + +D+GT RIG+A DP A P + L I
Sbjct: 3 AAWTRGRR-LGLDVGTARIGVASCDPDGILATPVETIRVVDGDPGWAAELRRLGELIAEY 61
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
+ ++GLP ++ G E R+F + VP DERLTTV+A L
Sbjct: 62 DAVGVVVGLPTSLKGRETASTAMARSFADALTTASPEVPVELVDERLTTVTAGAALHGAG 121
Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
+ +K+ +D AA ++LQ +D
Sbjct: 122 RNTRKQRDVIDQAAAVVLLQAWIDS 146
>gi|227495467|ref|ZP_03925783.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM
15436]
gi|226831014|gb|EEH63397.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM
15436]
Length = 155
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 65/131 (49%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G RIG+A++DP + + P L ELL+ I + +IG+P+++
Sbjct: 8 IGVDYGKSRIGVAVTDPSGKISFPHTTLQFSPYGVHLDELLNLIVEKQAIEVVIGMPVHL 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG EG R F + + + DERLTT A L +M V + R K+D +
Sbjct: 68 NGKEGSSAEFVRDFANELAVEIPDIRVCLMDERLTTNQAHAGLSEMGVDNRARKNKIDQL 127
Query: 140 AAALILQEVLD 150
AA++IL+ ++
Sbjct: 128 AASIILENAIE 138
>gi|332704470|ref|ZP_08424558.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis
Bay]
gi|332554619|gb|EGJ51663.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis
Bay]
Length = 163
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N + ID G KR+GLA++D G R A PRP L R E+ E + A ++GL
Sbjct: 28 NVRLLGIDFGLKRVGLALTDEGGRMAFPRPALARTSNDALIAEIGRMAAEEKVEAVVLGL 87
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ M+G E R + + + DERLT+ AQ L + VS KK K
Sbjct: 88 PIAMDGEETDLSRQVRNLARKITSK-TGLKVHLMDERLTSAEAQARLREAGVSSKKMKGK 146
Query: 136 VDSIAAALILQEVLDR 151
+DS AA LIL+ L R
Sbjct: 147 LDSGAAVLILEAYLGR 162
>gi|256027954|ref|ZP_05441788.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
D11]
gi|289765899|ref|ZP_06525277.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D11]
gi|289717454|gb|EFD81466.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D11]
Length = 147
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKKV ++A + + ++G+
Sbjct: 1 MKRYIALDIGDVRIGVAKSDIMGIIASPLETINRKKV-KSAKRIAEICKENDTNLIVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL ++N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIKKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD--RISFLESSK 159
VD +AA++ILQ LD ++ FLE K
Sbjct: 120 VVDKVAASIILQTYLDMKKLKFLEEGK 146
>gi|209518623|ref|ZP_03267441.1| Holliday junction resolvase YqgF [Burkholderia sp. H160]
gi|209500906|gb|EEA00944.1| Holliday junction resolvase YqgF [Burkholderia sp. H160]
Length = 146
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A P + + L I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRRARPLVVVQNRSKEYRFEALGKLIAEWKPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ R + F + + + + +P + DER ++V A+ + N R
Sbjct: 67 LPMHPDGTPHERTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAEAEIRAGN----ARAD 121
Query: 135 KVDSIAAALILQEVLDRI 152
+D+ AA++ILQ+ LD +
Sbjct: 122 MLDAEAASIILQQYLDGL 139
>gi|119716635|ref|YP_923600.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614]
gi|167012741|sp|A1SJC8|RUVX_NOCSJ RecName: Full=Putative Holliday junction resolvase
gi|119537296|gb|ABL81913.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614]
Length = 156
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-QTALELLSFITTEN--IAAFIIGLP 76
ID G RIG+A SDP A P + R K +L+ E + ++GLP
Sbjct: 7 IGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEVVVGLP 66
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+++G EGP R F + R VP DER+TTVSA+ +L D + KR V
Sbjct: 67 RSLSGREGPAAAKVREFAGRLAARVAPVPVRLVDERMTTVSAEAMLRDQGRTGGKRRAVV 126
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
D AA LILQ LD ++ G
Sbjct: 127 DQAAAVLILQHALDTERATGAAPG 150
>gi|189184333|ref|YP_001938118.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi
str. Ikeda]
gi|226731634|sp|B3CU37|RUVX_ORITI RecName: Full=Putative Holliday junction resolvase
gi|189181104|dbj|BAG40884.1| putative Hollyday junction resolvase [Orientia tsutsugamushi str.
Ikeda]
Length = 157
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I I + +++ + I ID G K++G+AIS+ A P + + ++
Sbjct: 1 MIINSIIEFLQAADIKKQILGIDFGEKKVGVAISNIEHTVAMPLQTIFATNQDR-INKIQ 59
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
NI A +IGLP ++G+E + H + F + + ++ + +P DERLT+ +A
Sbjct: 60 EIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFANKLANKLL-LPIFLCDERLTSKAANN 118
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+L N+ RK R D +AA++IL+ L R+ +S
Sbjct: 119 LLKMGNIKRKVRNAIDDRVAASIILEGTLKRMQNSKS 155
>gi|237744282|ref|ZP_04574763.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
7_1]
gi|229431511|gb|EEO41723.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
7_1]
Length = 147
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKKV ++ + + ++G+
Sbjct: 1 MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLIVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL ++N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD--RISFLESSK 159
VD +AA++ILQ LD ++ FLE K
Sbjct: 120 VVDKVAASIILQTYLDMKKLKFLEEGK 146
>gi|240047431|ref|YP_002960819.1| putative Holliday junction resolvase [Mycoplasma conjunctivae
HRC/581]
gi|239985003|emb|CAT04996.1| Putative Holliday junction resolvase [Mycoplasma conjunctivae]
Length = 141
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFII 73
+ I ++DLGTK G AI+DP A + Q L++ I ++
Sbjct: 4 KKRILALDLGTKTCGFAITDPLAIIAQSLENFTYKNGDLNQIVLKIRDLQKQYEIGKIVL 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G PL MNG++ P + +++ + +P V DERL+T A ILI NVSRKKR
Sbjct: 64 GYPLYMNGNKAPHTLLVEK-MSSILKQNFQIPVVLQDERLSTSQAHDILILANVSRKKRK 122
Query: 134 QKVDSIAAALILQEVL 149
+ +D +AA +IL+ L
Sbjct: 123 KVIDKLAAQIILERYL 138
>gi|145224344|ref|YP_001135022.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK]
gi|315444676|ref|YP_004077555.1| hypothetical protein Mspyr1_31030 [Mycobacterium sp. Spyr1]
gi|145216830|gb|ABP46234.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK]
gi|315262979|gb|ADT99720.1| conserved hypothetical protein TIGR00250 [Mycobacterium sp. Spyr1]
Length = 175
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFI 72
ID+G+ RIG+A+SDP A P + R + + L + + +
Sbjct: 23 PGRGRRLGIDVGSVRIGVAVSDPDAVLATPVETVTRDRRSGRHLRRLTTLVGEYEAVEVV 82
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLP + G + R VP DER TTV+AQ+ L + V + +
Sbjct: 83 IGLPRTLGNRAGSSAQDATEVADQLAARIAPVPVRLADERFTTVTAQRELREAGVRARGQ 142
Query: 133 IQKVDSIAAALILQEVLDRISF 154
+D AA ILQ LD+
Sbjct: 143 KSMIDQAAAVGILQNWLDQRRA 164
>gi|262273737|ref|ZP_06051550.1| putative Holliday junction resolvase [Grimontia hollisae CIP
101886]
gi|262222152|gb|EEY73464.1| putative Holliday junction resolvase [Grimontia hollisae CIP
101886]
Length = 143
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D GTK IG+AI A P L K + + + + ++GLP
Sbjct: 5 QTVLGFDYGTKSIGVAIGQAITGTARPLKALKAKDGIPSWEAIEAILKEWAPDLVVVGLP 64
Query: 77 LNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
L+++G E R F + + R V DERLTT A+ L + + +
Sbjct: 65 LDLHGGELETITPRARKFANRLKGR-FGVNVELHDERLTTTEARASLFEYGGYKALGKGE 123
Query: 136 VDSIAAALILQEVLDR 151
+DS +A +I++ +
Sbjct: 124 IDSQSAVIIVESWFEN 139
>gi|302346307|ref|YP_003814605.1| RNAse YqgF [Prevotella melaninogenica ATCC 25845]
gi|302150718|gb|ADK96979.1| RNAse YqgF [Prevotella melaninogenica ATCC 25845]
Length = 139
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP A+ + ++ + L +I E ++ +IG
Sbjct: 1 MSRILAIDYGKKRTGLAVTDPLCIIANGLATVPTSELFEF---LNQYIAKEAVSQLVIGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P+ NG + FV+ +P ++DER T+V A Q +I V +K R
Sbjct: 58 PIQPNGQPSENLARVEQFVNRWRKAHPELPIDYYDERFTSVIAHQAMIAGGVKKKTRRED 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134
>gi|288802834|ref|ZP_06408271.1| Holliday junction resolvase [Prevotella melaninogenica D18]
gi|288334651|gb|EFC73089.1| Holliday junction resolvase [Prevotella melaninogenica D18]
Length = 139
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP A+ + ++ + L +I E ++ +IG
Sbjct: 1 MSRILAIDYGKKRTGLAVTDPLCIIANGLATVPTSELFEF---LNQYIVKEAVSQLVIGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P+ NG + FV+ +P ++DER T+V A Q +I V +K R
Sbjct: 58 PIQPNGQPSENLARVEQFVNRWRKAHPELPIDYYDERFTSVIAHQAMIAGGVKKKTRRED 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134
>gi|237785597|ref|YP_002906302.1| Holliday junction resolvase-like protein [Corynebacterium
kroppenstedtii DSM 44385]
gi|259495700|sp|C4LIV4|RUVX_CORK4 RecName: Full=Putative Holliday junction resolvase
gi|237758509|gb|ACR17759.1| hypothetical protein ckrop_1006 [Corynebacterium kroppenstedtii DSM
44385]
Length = 164
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-----VTQTALELLSFITTENIA 69
P + +D+GT RIG+A+SDP A P + R + ++ ++
Sbjct: 16 PGRR-LGLDVGTVRIGVAVSDPDGILATPVSTVARTTKRRGPDGEDIDSIVQLAHDYSVV 74
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I+GLP ++GS G V + + V VP + DER+TTV AQ L D
Sbjct: 75 EVIVGLPRMLDGSAGSSVKHAQDVGFRIRRRLERDGVDVPIRYVDERMTTVMAQSNLHDA 134
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
+S K+ +D AA ILQ LD+
Sbjct: 135 GISVKEGRSVIDQAAAVEILQTWLDQ 160
>gi|41407176|ref|NP_960012.1| Holliday junction resolvase-like protein [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|254775876|ref|ZP_05217392.1| Holliday junction resolvase-like protein [Mycobacterium avium
subsp. avium ATCC 25291]
gi|62900995|sp|Q741L2|RUVX_MYCPA RecName: Full=Putative Holliday junction resolvase
gi|41395527|gb|AAS03395.1| hypothetical protein MAP_1078 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 167
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 60/147 (40%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
ID+G+ RIG+A SDP A P + R + + L + +T ++
Sbjct: 19 PGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVV 78
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP + G + R P DERLTTV+AQ+ L V K++
Sbjct: 79 GLPRTLADRTGTSALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQR 138
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+D AA ILQ LD+ G
Sbjct: 139 AVIDQAAAVAILQSWLDQRRAATREAG 165
>gi|288925814|ref|ZP_06419745.1| Holliday junction resolvase [Prevotella buccae D17]
gi|315608231|ref|ZP_07883221.1| Holliday junction resolvase [Prevotella buccae ATCC 33574]
gi|288337469|gb|EFC75824.1| Holliday junction resolvase [Prevotella buccae D17]
gi|315250012|gb|EFU30011.1| Holliday junction resolvase [Prevotella buccae ATCC 33574]
Length = 139
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I SID G KR GLA++DP + A+ + + L +++ E + +IG P
Sbjct: 2 RIVSIDYGKKRTGLAVTDPLQIIANGLATV---SSVELFGFLETYVKKEGVERIVIGRPT 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR---IQ 134
MNG + F + +P ++DER T+V A + +ID V +K R
Sbjct: 59 QMNGQPSENLVRVENFYNRWCKAHPEIPIEYYDERFTSVIAHRAMIDGGVKKKVRQENKG 118
Query: 135 KVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 119 LVDEISATIILQDYM 133
>gi|260494134|ref|ZP_05814265.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_33]
gi|260198280|gb|EEW95796.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_33]
Length = 147
Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKKV ++ + + ++G+
Sbjct: 1 MKRYIALDIGDVRIGVAKSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLIVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL ++N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIKKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD--RISFLESSK 159
VD +AA++ILQ LD ++ FLE K
Sbjct: 120 VVDKVAASIILQTYLDMKKLKFLEEGK 146
>gi|305664804|ref|YP_003861091.1| Holliday junction resolvase-like protein [Maribacter sp. HTCC2170]
gi|88707926|gb|EAR00165.1| Holliday junction resolvase-like protein [Maribacter sp. HTCC2170]
Length = 154
Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
K LK I ++D G R G+A++D + A + K + L +++ EN+
Sbjct: 13 FAKKLK-LGRIVALDYGKVRTGIAVTDELQLIASGLTTV---KTVELISFLKKYVSEENV 68
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
F++G P M+ + + F+ ++ + +P DER T+ A Q +ID +
Sbjct: 69 EKFVVGEPRQMDYTPSQAEELIKPFLKHLGRTFIEIPIERQDERFTSKMAFQSMIDGGIK 128
Query: 129 RKKRIQK--VDSIAAALILQEVLDR 151
+K+R K VD I+A LILQ L++
Sbjct: 129 KKQRKNKALVDEISATLILQAYLNK 153
>gi|262038171|ref|ZP_06011568.1| putative Holliday junction resolvase [Leptotrichia goodfellowii
F0264]
gi|261747819|gb|EEY35261.1| putative Holliday junction resolvase [Leptotrichia goodfellowii
F0264]
Length = 138
Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G RIG+A SDP A + R V + ++ E + GL
Sbjct: 1 MKKFIGLDIGDVRIGVAKSDPLGILATGLEVIDRNTVNP-VQRIKEILSDEGTKKIVAGL 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P +++G++ + FV + + + + DER TT A+ L + + K+R +
Sbjct: 60 PKSLDGTKKRQAEKVEEFVAELKESIPDIEVIMVDERYTTTEAEHYLKNYSKKNGKERRK 119
Query: 135 KVDSIAAALILQEVLDRIS 153
VD +AA++ILQ+ LDRI
Sbjct: 120 VVDMVAASIILQKYLDRIK 138
>gi|313157066|gb|EFR56496.1| RNAse H domain protein, YqgF family [Alistipes sp. HGB5]
Length = 137
Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR G+A+SDP R A + K + L + E++ ++G
Sbjct: 1 MGRILAIDYGTKRTGIAVSDPLRLIAGGLETVETKGLEAW---LAKYFAAEDVTTIVVGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P M+G+ + VF+DER T+V A + +++ + R R K
Sbjct: 58 PTQMDGTPSETWRFVEPLAARLRRAYPDKEVVFYDERFTSVLAHRTMLESGIGRMARRNK 117
Query: 136 --VDSIAAALILQEVLD 150
VD I+A +ILQ ++
Sbjct: 118 ALVDKISATIILQSYME 134
>gi|258620730|ref|ZP_05715765.1| Holliday junction resolvase-like protein [Vibrio mimicus VM573]
gi|258625614|ref|ZP_05720496.1| Holliday junction resolvase-like protein [Vibrio mimicus VM603]
gi|262403908|ref|ZP_06080465.1| putative Holliday junction resolvase [Vibrio sp. RC586]
gi|258582116|gb|EEW06983.1| Holliday junction resolvase-like protein [Vibrio mimicus VM603]
gi|258586928|gb|EEW11642.1| Holliday junction resolvase-like protein [Vibrio mimicus VM573]
gi|262349870|gb|EEY99006.1| putative Holliday junction resolvase [Vibrio sp. RC586]
Length = 140
Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG AI A P E+ I I+GL
Sbjct: 2 SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + R +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLETITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARAELFAMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD +A +IL+ +
Sbjct: 121 NVDCQSAVIILESWFES 137
>gi|163803740|ref|ZP_02197598.1| Holliday junction resolvase-like protein [Vibrio sp. AND4]
gi|159172459|gb|EDP57327.1| Holliday junction resolvase-like protein [Vibrio sp. AND4]
Length = 141
Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++G
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGY 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + R +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLETITPRAKKFANRLHGR-YGLPVELHDERLSTTEARAELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +A +IL+ + +
Sbjct: 121 NIDCQSAVVILESWFESL 138
>gi|167920174|ref|ZP_02507265.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
BCC215]
Length = 146
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ +L + + + D G KRIG+A+ + R A + Q + I
Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREQRFKAVGELIAEWKP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ F + + + + +P + DER ++V A+ L
Sbjct: 61 DALVVGLPLHPDGAPHEMTQRAMRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157
+VD+ AA +ILQ+ LD +
Sbjct: 118 --DAADRVDAEAARVILQQYLDGLPDHHE 144
>gi|260591630|ref|ZP_05857088.1| putative Holliday junction resolvase [Prevotella veroralis F0319]
gi|260536430|gb|EEX19047.1| putative Holliday junction resolvase [Prevotella veroralis F0319]
Length = 139
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP R A+ + + L ++ E + +IG
Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRIIANGLATIPTSDI---FDYLTQYVAKEPVDQLVIGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P+ NG + FV+ +P ++DER T+V A Q +I V +K R
Sbjct: 58 PIQPNGQPSENLARVENFVNRWRKLHPEMPIDYYDERFTSVIAHQAMIAGGVKKKTRRED 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134
>gi|225851249|ref|YP_002731483.1| hypothetical protein PERMA_1719 [Persephonella marina EX-H1]
gi|225645144|gb|ACO03330.1| conserved hypothetical protein [Persephonella marina EX-H1]
Length = 142
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ ++D+GTKRIG+A SDP +P P++ ++ + +I +IG
Sbjct: 2 KGKRTLALDVGTKRIGVAYSDPLGISTNPLPYI--DNDEHAFEKIRDVVREYDIGTVVIG 59
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
LPL + G EG + T+ F + V F DER TT A++ L + R K+
Sbjct: 60 LPLTLKGKEGTQAKLTKEFAQKLKGYLPEDVEIEFVDERFTTSLAEKQLKETG-KRSKKR 118
Query: 134 QKVDSIAAALILQEVLDRISFL 155
+K+DS++A IL+ L++ ++
Sbjct: 119 EKIDSLSAVYILKTYLEKKQYM 140
>gi|255028975|ref|ZP_05300926.1| Holliday junction resolvase-like protein [Listeria monocytogenes
LO28]
Length = 116
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + + + ++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR +
Sbjct: 61 NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKK 116
>gi|269218534|ref|ZP_06162388.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
848 str. F0332]
gi|269211645|gb|EEZ77985.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
848 str. F0332]
Length = 156
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 3/148 (2%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++ + + D+G RIG+A DP A P L R + + I
Sbjct: 1 MRRGRRV-GFDVGQVRIGVAQCDPEGILATPVETLWR--GESDIDDAAQIVRDCEAMEVI 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+G+EG RA+ + + P DERL+TV+A LI + +K+
Sbjct: 58 VGLPLNMDGTEGASARDARAWAAKLAESVAPAPVRLVDERLSTVTAHGQLIAAGRNSRKQ 117
Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
VD AA +IL L+ ++ G
Sbjct: 118 RSIVDQAAAVVILNTALEMEQRTGNAPG 145
>gi|153835257|ref|ZP_01987924.1| conserved hypothetical protein [Vibrio harveyi HY01]
gi|148868232|gb|EDL67372.1| conserved hypothetical protein [Vibrio harveyi HY01]
Length = 141
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEVTGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + R +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLETITPRAKKFANRLHGR-YGLPVELHDERLSTAEARAELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +A +IL+ + +
Sbjct: 121 NIDCQSAVVILESWFESL 138
>gi|47097199|ref|ZP_00234763.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
str. 1/2a F6854]
gi|47014413|gb|EAL05382.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
str. 1/2a F6854]
Length = 117
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISDP A + + + + + + ++GL
Sbjct: 2 RIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
P NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR
Sbjct: 62 PKNMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 117
>gi|332975378|gb|EGK12272.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Desmospora sp. 8437]
Length = 141
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +DLG KR+G+A+SDP A L R+ L I + A ++GLP
Sbjct: 3 RIMGLDLGEKRVGVAVSDPMGWTAQGVDVL-RRDQPDWMDRLARLIEDYEVEALVVGLPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GS G + + R + + + +P WDERL+TV+ ++ LID ++SR+KR + VD
Sbjct: 62 NMDGSIGAKGEACRQLGREL-EERFQIPVELWDERLSTVAVERTLIDADLSRRKRRKVVD 120
Query: 138 SIAAALILQEVLD 150
+AA+ ILQ L+
Sbjct: 121 RMAASWILQGYLE 133
>gi|27364899|ref|NP_760427.1| Holliday junction resolvase-like protein [Vibrio vulnificus CMCP6]
gi|320155282|ref|YP_004187661.1| putative Holliday junction resolvase [Vibrio vulnificus MO6-24/O]
gi|32130025|sp|Q8DCB1|RUVX_VIBVU RecName: Full=Putative Holliday junction resolvase
gi|27361044|gb|AAO09954.1| Putative Holliday junction resolvase [Vibrio vulnificus CMCP6]
gi|319930594|gb|ADV85458.1| putative Holliday junction resolvase [Vibrio vulnificus MO6-24/O]
Length = 140
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P E+ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + F + R +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKALETITPRAKKFAQRLQGR-FGLPVELHDERLSTTEARSELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 121 NVDCQSAVIILESWFE 136
>gi|317154143|ref|YP_004122191.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
gi|316944394|gb|ADU63445.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
Length = 138
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID G KR+GLAISD P L R ++ I E++ A ++GLPL+M
Sbjct: 4 LGIDFGLKRVGLAISDRSGILVSPYLTLERTTRDALFEAIIEIIRQESVEAIVVGLPLSM 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G + R F ++ R+ +P DERLT+ A++ L ++ KR +DS
Sbjct: 64 DGEDTLTTRQARNFAQSL-GRRTDLPIHLADERLTSAQAEEELNAADLRGTKRKMALDSQ 122
Query: 140 AAALILQEVLDR 151
AA +IL+ L+
Sbjct: 123 AAVIILRTWLEN 134
>gi|311696400|gb|ADP99273.1| Holliday junction resolvase [marine bacterium HP15]
Length = 131
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GT+RIG+A+ P + + ++ S + ++GLPLNM
Sbjct: 1 MAFDFGTRRIGVAVGQELLGSGQPVALIPARDGIPDWQQIESLLEEWRPDLVVVGLPLNM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ +E R F + R +VP DERLT+ A+ ++ SR VD
Sbjct: 61 DDTENDMCARARKFGKRLHGR-YHVPVEMVDERLTSFEAKGEVMAAGGSRDFGRHGVDDR 119
Query: 140 AAALILQEVLDR 151
AA LIL+ +
Sbjct: 120 AAVLILETFFQQ 131
>gi|220917826|ref|YP_002493130.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
2CP-1]
gi|254767492|sp|B8JDZ9|RUVX_ANAD2 RecName: Full=Putative Holliday junction resolvase
gi|219955680|gb|ACL66064.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
2CP-1]
Length = 137
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG RIGLA++D R A +VR+ + + + ++GLPL
Sbjct: 2 RTLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLAAIAEVARDYEVTRAVVGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+EGP R F + + + VP +DERL++ A+ L +S +++ +VD
Sbjct: 62 NMDGTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVD 120
Query: 138 SIAAALILQEVLDRIS 153
+ AAA+ILQ LDR +
Sbjct: 121 AEAAAVILQGWLDRRA 136
>gi|300115248|ref|YP_003761823.1| Holliday junction resolvase YqgF [Nitrosococcus watsonii C-113]
gi|299541185|gb|ADJ29502.1| Holliday junction resolvase YqgF [Nitrosococcus watsonii C-113]
Length = 152
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 3/142 (2%)
Query: 9 LVKSLKPNQPI-ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
L I D G + IG+A+ A+P L + ++ I N
Sbjct: 5 LDTPFPSKPRIALGFDFGLRYIGVAVGQEITHSANPLTTLKAHEGNPDWNQITQLIRQWN 64
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I+GLPLNM+ SE + R F + R + + DERL+TV A++ L +
Sbjct: 65 PDLLIVGLPLNMDQSEQFLTKAARRFGRRLHGR-YGLTIEWIDERLSTVEARERLN-IKS 122
Query: 128 SRKKRIQKVDSIAAALILQEVL 149
S R Q +D +AA ILQ L
Sbjct: 123 SASGRRQGIDQMAAQCILQTWL 144
>gi|327398201|ref|YP_004339070.1| Holliday junction resolvase [Hippea maritima DSM 10411]
gi|327180830|gb|AEA33011.1| Holliday junction resolvase [Hippea maritima DSM 10411]
Length = 136
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ID GTK+IG+AISD A P + + ++ + I ++G+P+
Sbjct: 2 RILGIDYGTKKIGIAISDETNTIALPHGVI--DTDGEYLDKIKEIVKKNKITRIVVGMPI 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS-RKKRIQKV 136
+ G +G R T F++ + + + V WDERL+T +++IL NV RK + + +
Sbjct: 60 TLKGEKGKRALETEDFINELACKIENIEIVEWDERLSTRFSERILNKANVKGRKNKKKVI 119
Query: 137 DSIAAALILQEVLDRI 152
D IAA ILQ LD +
Sbjct: 120 DKIAATFILQGYLDSL 135
>gi|284929110|ref|YP_003421632.1| hypothetical protein UCYN_05470 [cyanobacterium UCYN-A]
gi|284809569|gb|ADB95274.1| conserved hypothetical protein TIGR00250 [cyanobacterium UCYN-A]
Length = 136
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KRIG+A D A + R+ T +L I T ++GLP+ M
Sbjct: 1 MGLDVGKKRIGVAGCDGTGLIATELITIHRQSFTSDIEKLKKLIETREATKLVVGLPILM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + F N I + +P + DER T++ A L VD
Sbjct: 61 DGSLGSQAKQIQKFG-NRISTILNLPIEYIDERFTSLEAVSELKAQRKYSSYEKGLVDCY 119
Query: 140 AAALILQEVLDR 151
AA +ILQ LD+
Sbjct: 120 AAKIILQRWLDQ 131
>gi|118466058|ref|YP_882612.1| Holliday junction resolvase-like protein [Mycobacterium avium 104]
gi|118167345|gb|ABK68242.1| conserved hypothetical protein [Mycobacterium avium 104]
Length = 165
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 60/147 (40%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
ID+G+ RIG+A SDP A P + R + + L + +T ++
Sbjct: 17 PGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVV 76
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP + G + R P DERLTTV+AQ+ L V K++
Sbjct: 77 GLPRTLADRTGASALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQR 136
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+D AA ILQ LD+ G
Sbjct: 137 AVIDQAAAVAILQSWLDQRRAAVREAG 163
>gi|91782034|ref|YP_557240.1| Holliday junction resolvase-like protein [Burkholderia xenovorans
LB400]
gi|296160318|ref|ZP_06843136.1| Holliday junction resolvase YqgF [Burkholderia sp. Ch1-1]
gi|118597203|sp|Q144Q1|RUVX_BURXL RecName: Full=Putative Holliday junction resolvase
gi|91685988|gb|ABE29188.1| Conserved hypothetical protein 250 [Burkholderia xenovorans LB400]
gi|295889529|gb|EFG69329.1| Holliday junction resolvase YqgF [Burkholderia sp. Ch1-1]
Length = 146
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + + A P + + + I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTKSARPLVIVQNRSREYRFEAVGKLIAEWKPNALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + + + + +P + DER ++V A+ + N R
Sbjct: 67 LPMHPDGTPHEMTQLAKRFGNQL-NGRFNLPVTWIDERYSSVEAKAEIRAGNG----RAD 121
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASIILQQYLDGLS 140
>gi|312890474|ref|ZP_07750010.1| Holliday junction resolvase YqgF [Mucilaginibacter paludis DSM
18603]
gi|311296932|gb|EFQ74065.1| Holliday junction resolvase YqgF [Mucilaginibacter paludis DSM
18603]
Length = 151
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I + D GTKRIG+A++DP + A + K + + L + + FI+G P
Sbjct: 16 RIMAFDYGTKRIGIAVTDPLQIIATGLDTVHPKDIVEY---LKKYFVLNPVERFIVGEPK 72
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
M+ + + FV + +P DER T+ A ++ + + R K
Sbjct: 73 QMDNTASQSAPHVKGFVTILKKNFPDIPVEMLDERFTSKMASAVIAQSGMKKMDRQNKAL 132
Query: 136 VDSIAAALILQEVLDRIS 153
VD+I+A +ILQ ++R +
Sbjct: 133 VDTISATIILQSWMERFN 150
>gi|320101933|ref|YP_004177524.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644]
gi|319749215|gb|ADV60975.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644]
Length = 183
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 5/139 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTENIAAF 71
I ++D G KR+GLAISDPGR A P L R T L + +
Sbjct: 1 MGTILALDHGLKRVGLAISDPGRSIASPLGRLERPGGEAGFTTEIQTLKRLVREHGVDRL 60
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLP++ +G + P+ + R + + + + ++ DER +T A +++ + +S K
Sbjct: 61 VMGLPVHTSGRDSPQARAARQWGDRVAKE-LGLTIIYVDERYSTKHADELMREAGLSAAK 119
Query: 132 RIQKVDSIAAALILQEVLD 150
R ++VDS+AA +IL++ LD
Sbjct: 120 RKRRVDSLAAVVILRDYLD 138
>gi|153005395|ref|YP_001379720.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp.
Fw109-5]
gi|167012689|sp|A7HDE0|RUVX_ANADF RecName: Full=Putative Holliday junction resolvase
gi|152028968|gb|ABS26736.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. Fw109-5]
Length = 137
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG RIGLA++D R A P + + + + + + ++GLPL
Sbjct: 2 RYLGLDLGRARIGLALADDVLRTARPLSVVRHRTREADLASIAATLREWEVGTAVVGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSEG RAF + R VP +DERL+T A+ L + S ++ +VD
Sbjct: 62 NMDGSEGASARYARAFAEELA-RATGVPVELFDERLSTFEAESRLREQGFSARELRGRVD 120
Query: 138 SIAAALILQEVLD 150
+ AAA+ILQ LD
Sbjct: 121 AEAAAVILQGWLD 133
>gi|86131929|ref|ZP_01050526.1| Holliday junction resolvase-like protein [Dokdonia donghaensis
MED134]
gi|85817751|gb|EAQ38925.1| Holliday junction resolvase-like protein [Dokdonia donghaensis
MED134]
Length = 163
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 5/143 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + I +ID GTKR G+A++D + A + K + + L +++ E +
Sbjct: 21 FLHQILQMARIIAIDYGTKRTGVAVTDELQLIASGLTTVPTKDIFKF---LATYLAEEKV 77
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A +IG P MN F ++ + + + DER T+ A Q +ID +
Sbjct: 78 EAMVIGEPKRMNNEASDVEEHIVRFRESVEKKHPELKIIRQDERFTSKMAFQTMIDSGIG 137
Query: 129 RKKRIQK--VDSIAAALILQEVL 149
+KKR K VD I+A +ILQ+ L
Sbjct: 138 KKKRQNKALVDQISATIILQDYL 160
>gi|209694139|ref|YP_002262067.1| Holliday junction resolvase-like protein [Aliivibrio salmonicida
LFI1238]
gi|226725480|sp|B6EMV2|RUVX_ALISL RecName: Full=Putative Holliday junction resolvase
gi|208008090|emb|CAQ78231.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
Length = 141
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P + T ++ I ++GL
Sbjct: 3 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWQPDLIVVGL 62
Query: 76 PLNMNGSEGP-RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G E + F + + R DERL+TV A+ L + +
Sbjct: 63 PTDLHGKELDVITPKAKKFANRLHGR-FGNQVELHDERLSTVEARADLFEFGGYKALSKG 121
Query: 135 KVDSIAAALILQEVLDR 151
VD +A +IL+ +
Sbjct: 122 NVDCQSAVVILESWFES 138
>gi|323498675|ref|ZP_08103666.1| Holliday junction resolvase-like protein [Vibrio sinaloensis DSM
21326]
gi|323316275|gb|EGA69295.1| Holliday junction resolvase-like protein [Vibrio sinaloensis DSM
21326]
Length = 140
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I S D GTK IG AI A P ++ I ++GL
Sbjct: 2 SRTIMSFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKLIKEWQPDLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + R +P DERL+T A+ L +M +
Sbjct: 62 PTDLHGRDLETITPRAKKFANRLHGR-FGLPVELHDERLSTTEARAELFNMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 121 NVDCQSAVVILESWFE 136
>gi|237813515|ref|YP_002897966.1| hypothetical protein GBP346_A3291 [Burkholderia pseudomallei
MSHR346]
gi|237503558|gb|ACQ95876.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
Length = 146
Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ +L + + + D G KRIG+A+ + R A + + + I
Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGALIAEWKP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ F + + + + +P + DER ++V A+ L
Sbjct: 61 DALVVGLPLHPDGAPHEMTQRAMRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157
++D+ AA +ILQ+ LD +
Sbjct: 118 --DAADRIDAEAARVILQQYLDGLPDHHE 144
>gi|126441995|ref|YP_001060123.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
668]
gi|167012705|sp|A3NCQ2|RUVX_BURP6 RecName: Full=Putative Holliday junction resolvase
gi|126221488|gb|ABN84994.1| RNAse YqgF [Burkholderia pseudomallei 668]
Length = 146
Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 5/149 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ +L + + + D G KRIG+A+ + R A + + I
Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGELIAEWKP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ F + + + + +P + DER ++V A+ L
Sbjct: 61 DALVVGLPLHPDGAPHEMTQRAMRFGNQL-NGRFNLPVNWVDERYSSVEARAGLRARG-- 117
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157
+VD+ AA +ILQ+ LD +
Sbjct: 118 --DAADRVDAEAARVILQQYLDGLPDHHE 144
>gi|197123036|ref|YP_002134987.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp. K]
gi|226725482|sp|B4UH04|RUVX_ANASK RecName: Full=Putative Holliday junction resolvase
gi|196172885|gb|ACG73858.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. K]
Length = 137
Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG RIGLA++D R A +VR+ + + + ++GLPL
Sbjct: 2 RTLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLSAIAEVARDYEVTRAVVGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+EGP R F + + + VP +DERL++ A+ L +S +++ +VD
Sbjct: 62 NMDGTEGPSARLARGFAPRL-EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVD 120
Query: 138 SIAAALILQEVLDRIS 153
+ AAA+ILQ LDR +
Sbjct: 121 AEAAAVILQGWLDRRA 136
>gi|291530568|emb|CBK96153.1| conserved hypothetical protein TIGR00250 [Eubacterium siraeum 70/3]
Length = 149
Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D G GLA D + A P + + ++ + + ++G P+
Sbjct: 2 KIMAVDYGDAHTGLACCDRTQTLASPIGVIDERNFQTCVEKVAAAAVEYEVGEVVVGNPI 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR R F +M+ + +P V WDER TTV+A ++ D+N K+R + +D
Sbjct: 62 NMNGTYGPRSEKCRMFA-DMLQNFLEIPVVMWDERSTTVTAHNMMNDVNKRGKERKKVID 120
Query: 138 SIAAALILQEVLDRISFL 155
++AAA+ILQ LD + L
Sbjct: 121 AVAAAVILQNYLDYKANL 138
>gi|289643075|ref|ZP_06475206.1| Holliday junction resolvase YqgF [Frankia symbiont of Datisca
glomerata]
gi|289507119|gb|EFD28087.1| Holliday junction resolvase YqgF [Frankia symbiont of Datisca
glomerata]
Length = 164
Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78
ID+GT RIG+A SDP R A P L R ++ E+ + + ++GLP
Sbjct: 9 VGIDVGTVRIGVAASDPDARIAFPVTTLRRGTRLNSDLDEIAMIVRDRHAVEVVVGLPTR 68
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G GP R + + R VP DERLTTV A + + + + + R VD
Sbjct: 69 LSGLPGPAARKAREYADLLAARVAPVPVRLVDERLTTVVAHRRMAERGLRARDRRAVVDQ 128
Query: 139 IAAALILQEVLD 150
AA ILQ LD
Sbjct: 129 EAAVQILQSALD 140
>gi|253583471|ref|ZP_04860669.1| DNA integration/recombination/inversion protein [Fusobacterium
varium ATCC 27725]
gi|251834043|gb|EES62606.1| DNA integration/recombination/inversion protein [Fusobacterium
varium ATCC 27725]
Length = 139
Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ S+D+G RIG+A SD A P + RKK T+ + T EN A ++G+P
Sbjct: 3 KKYISLDVGDVRIGVAKSDIMGIVATPLEVIDRKK-TKAVKRIKELCTQENTKALVVGIP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
+++G+E + R F+ + + + DERLTTVSA ++L + N ++ +
Sbjct: 62 KSLDGTEKRQAEKVREFIAKLNKEIEGLEIIEVDERLTTVSADRMLNESNKKGALEKRKV 121
Query: 136 VDSIAAALILQEVLD 150
VD IAAA+ILQ LD
Sbjct: 122 VDKIAAAIILQTFLD 136
>gi|167580846|ref|ZP_02373720.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis TXDOH]
Length = 146
Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 5/145 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ +L + + + D G KRIG+AI + R A + + I
Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ + F + + + + +P + DER ++V A+ L
Sbjct: 61 DALVVGLPLHPDGAPHEMTQQAKRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117
Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153
+VD+ AA +ILQ+ LD +
Sbjct: 118 --DAANRVDAEAARVILQQFLDGLP 140
>gi|53720302|ref|YP_109288.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
K96243]
gi|53725988|ref|YP_103583.1| Holliday junction resolvase-like protein [Burkholderia mallei ATCC
23344]
gi|67643857|ref|ZP_00442600.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|76810774|ref|YP_334541.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
1710b]
gi|121599348|ref|YP_992257.1| Holliday junction resolvase-like protein [Burkholderia mallei
SAVP1]
gi|124385182|ref|YP_001028699.1| Holliday junction resolvase-like protein [Burkholderia mallei NCTC
10229]
gi|126450272|ref|YP_001081395.1| Holliday junction resolvase-like protein [Burkholderia mallei NCTC
10247]
gi|126454156|ref|YP_001067385.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
1106a]
gi|134280355|ref|ZP_01767066.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
gi|167000842|ref|ZP_02266647.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
gi|167720880|ref|ZP_02404116.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
DM98]
gi|167739861|ref|ZP_02412635.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
14]
gi|167817082|ref|ZP_02448762.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
91]
gi|167825492|ref|ZP_02456963.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
9]
gi|167846983|ref|ZP_02472491.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
B7210]
gi|167895564|ref|ZP_02482966.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
7894]
gi|167903961|ref|ZP_02491166.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
NCTC 13177]
gi|167912213|ref|ZP_02499304.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
112]
gi|217420341|ref|ZP_03451846.1| RNAse YqgF [Burkholderia pseudomallei 576]
gi|226193850|ref|ZP_03789452.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
Pakistan 9]
gi|242316862|ref|ZP_04815878.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1106b]
gi|254175582|ref|ZP_04882242.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
10399]
gi|254180908|ref|ZP_04887506.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1655]
gi|254191753|ref|ZP_04898256.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
Pasteur 52237]
gi|254196116|ref|ZP_04902541.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
S13]
gi|254202273|ref|ZP_04908636.1| conserved hypothetical protein [Burkholderia mallei FMH]
gi|254207606|ref|ZP_04913956.1| conserved hypothetical protein [Burkholderia mallei JHU]
gi|254260688|ref|ZP_04951742.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1710a]
gi|254298979|ref|ZP_04966429.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
406e]
gi|254356492|ref|ZP_04972768.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
gi|62900955|sp|Q62I87|RUVX_BURMA RecName: Full=Putative Holliday junction resolvase
gi|62900957|sp|Q63RI0|RUVX_BURPS RecName: Full=Putative Holliday junction resolvase
gi|146325556|sp|Q3JPG2|RUVX_BURP1 RecName: Full=Putative Holliday junction resolvase
gi|167012701|sp|A3MMA9|RUVX_BURM7 RecName: Full=Putative Holliday junction resolvase
gi|167012702|sp|A2S9T0|RUVX_BURM9 RecName: Full=Putative Holliday junction resolvase
gi|167012703|sp|A1V204|RUVX_BURMS RecName: Full=Putative Holliday junction resolvase
gi|167012704|sp|A3NYG4|RUVX_BURP0 RecName: Full=Putative Holliday junction resolvase
gi|52210716|emb|CAH36700.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|52429411|gb|AAU50004.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
23344]
gi|76580227|gb|ABA49702.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1710b]
gi|121228158|gb|ABM50676.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei
SAVP1]
gi|124293202|gb|ABN02471.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei NCTC
10229]
gi|126227798|gb|ABN91338.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1106a]
gi|126243142|gb|ABO06235.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei NCTC
10247]
gi|134248362|gb|EBA48445.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
gi|147746520|gb|EDK53597.1| conserved hypothetical protein [Burkholderia mallei FMH]
gi|147751500|gb|EDK58567.1| conserved hypothetical protein [Burkholderia mallei JHU]
gi|148025489|gb|EDK83643.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
gi|157808954|gb|EDO86124.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
406e]
gi|157939424|gb|EDO95094.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
Pasteur 52237]
gi|160696626|gb|EDP86596.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
10399]
gi|169652860|gb|EDS85553.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
S13]
gi|184211447|gb|EDU08490.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1655]
gi|217395753|gb|EEC35770.1| RNAse YqgF [Burkholderia pseudomallei 576]
gi|225934155|gb|EEH30140.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
Pakistan 9]
gi|238525304|gb|EEP88732.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|242140101|gb|EES26503.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1106b]
gi|243063272|gb|EES45458.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
gi|254219377|gb|EET08761.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1710a]
Length = 146
Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 5/149 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ +L + + + D G KRIG+A+ + R A + + I
Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGELIAEWKP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ F + + + + +P + DER ++V A+ L
Sbjct: 61 DALVVGLPLHPDGAPHEMTQRAMRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157
+VD+ AA +ILQ+ LD +
Sbjct: 118 --DAADRVDAEAARVILQQYLDGLPDHHE 144
>gi|310778165|ref|YP_003966498.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926]
gi|309747488|gb|ADO82150.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926]
Length = 139
Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIG+A SD FAHP + R K T+ + EN + ++G+P
Sbjct: 3 KKYLALDVGDVRIGVARSDAMGMFAHPLEVIDRTK-TKAVKRVQELCRQENTKSIVVGIP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
+++G E + R F+ + + + DERL+T+SA+++L + N + + +
Sbjct: 62 KSLDGQEKRQAEKVREFIEKLNKSIEGLEIIEIDERLSTISAERMLNETTNKDARGKRKV 121
Query: 136 VDSIAAALILQEVLD 150
VD IAAA+ILQ LD
Sbjct: 122 VDKIAAAIILQTYLD 136
>gi|167749575|ref|ZP_02421702.1| hypothetical protein EUBSIR_00533 [Eubacterium siraeum DSM 15702]
gi|167657429|gb|EDS01559.1| hypothetical protein EUBSIR_00533 [Eubacterium siraeum DSM 15702]
gi|291557838|emb|CBL34955.1| conserved hypothetical protein TIGR00250 [Eubacterium siraeum
V10Sc8a]
Length = 149
Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D G GLA D + A P + + ++ + + ++G P+
Sbjct: 2 KIMAVDYGDAHTGLACCDRTQTLASPIGVIDERNFQTCVEKVAAAAVEYEVGEVVVGNPI 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR R F +M+ + +P V WDER TTV+A ++ D+N K+R + +D
Sbjct: 62 NMNGTYGPRSEKCRMFA-DMLQNFLEIPVVMWDERSTTVTAHNMMNDVNKRGKERKKVID 120
Query: 138 SIAAALILQEVLDRISFL 155
++AAA+ILQ LD + L
Sbjct: 121 AVAAAVILQNYLDYKANL 138
>gi|296139684|ref|YP_003646927.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM
20162]
gi|296027818|gb|ADG78588.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM
20162]
Length = 161
Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 5/143 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++D+G RIG+A+SDP A P + + + +T +IGL
Sbjct: 9 RGRRLALDVGKARIGVAVSDPDGILATPVETVKAARDGSDLRRIAQLVTDYEPVEIVIGL 68
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILIDMNVSRK 130
P + G G F + F DER TTV+AQ+ L D V K
Sbjct: 69 PRTLRGDRGESARMAEGFAARLATVLDATDQPSPRVCFSDERFTTVTAQRALRDNGVRAK 128
Query: 131 KRIQKVDSIAAALILQEVLDRIS 153
++ +D AA ILQ LD
Sbjct: 129 EQRAVIDQAAAVAILQGWLDERR 151
>gi|297580605|ref|ZP_06942531.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297535021|gb|EFH73856.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 140
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG AI A P E+ I I+GL
Sbjct: 2 SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIAKQIKEWQPNLLIVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + R +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLDTITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARAELFAMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD +A +IL+ +
Sbjct: 121 NVDCQSAVIILESWFES 137
>gi|269960441|ref|ZP_06174814.1| Holliday junction resolvase-like protein [Vibrio harveyi 1DA3]
gi|269834868|gb|EEZ88954.1| Holliday junction resolvase-like protein [Vibrio harveyi 1DA3]
Length = 141
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + F + + R +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKALETITPRAKKFANRLQGR-YGLPVELHDERLSTAEARSELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +A +IL+ + +
Sbjct: 121 NIDCQSAVVILESWFESL 138
>gi|91228684|ref|ZP_01262598.1| Holliday junction resolvase-like protein [Vibrio alginolyticus
12G01]
gi|262393233|ref|YP_003285087.1| putative Holliday junction resolvase [Vibrio sp. Ex25]
gi|91187755|gb|EAS74073.1| Holliday junction resolvase-like protein [Vibrio alginolyticus
12G01]
gi|262336827|gb|ACY50622.1| putative Holliday junction resolvase [Vibrio sp. Ex25]
Length = 141
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + R F + R +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLETITPRARKFAKRLQGR-YGLPVELHDERLSTAEARAELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
VD +A +IL+ + +
Sbjct: 121 NVDCQSAVVILESWFEAL 138
>gi|158313531|ref|YP_001506039.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec]
gi|158108936|gb|ABW11133.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec]
Length = 188
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFIIGLP 76
+D+G+ R+G+A+SDP A P L R ++ EL + + ++GLP
Sbjct: 32 IGVDVGSVRVGVAVSDPDGLLAVPVTTLRRDVSRRGFADVDELADIVRDRHAVEVVVGLP 91
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+++G EG V R + + R VP DERLTTV A + + + + + R V
Sbjct: 92 RHLSGREGEAVRLARRYAEVLSARVAPVPVRLVDERLTTVVAHRRMAERGLRSRARRDLV 151
Query: 137 DSIAAALILQEVLD 150
D AA ILQ LD
Sbjct: 152 DQEAAVQILQHHLD 165
>gi|229519852|ref|ZP_04409286.1| hypothetical protein VIF_000366 [Vibrio cholerae TM 11079-80]
gi|229343140|gb|EEO08124.1| hypothetical protein VIF_000366 [Vibrio cholerae TM 11079-80]
Length = 140
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG AI A P E+ I I+GL
Sbjct: 2 SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + R +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLDTITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARAELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD +A +IL+ +
Sbjct: 121 NVDCQSAVIILESWFES 137
>gi|323698536|ref|ZP_08110448.1| Holliday junction resolvase YqgF [Desulfovibrio sp. ND132]
gi|323458468|gb|EGB14333.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
ND132]
Length = 138
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID G KR+GLA+SD P L R EL I E I A ++GLPL +
Sbjct: 4 LGIDFGLKRVGLAVSDRTGTLVSPLKTLERTTRQALFDELTEIIHDEAIEAVVVGLPLAL 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G + R F ++ R++ P DERLT+ A++ L + KR +DS
Sbjct: 64 SGEDTLTTRQARNFAESL-GRRIDAPVHLMDERLTSAQAEEELNAAGLRGAKRKAALDSQ 122
Query: 140 AAALILQEVLDR 151
AA +IL+ LD
Sbjct: 123 AAVVILRSWLDS 134
>gi|15640493|ref|NP_230120.1| Holliday junction resolvase-like protein [Vibrio cholerae O1 biovar
El Tor str. N16961]
gi|121590718|ref|ZP_01678050.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121728570|ref|ZP_01681591.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|147674125|ref|YP_001215992.1| Holliday junction resolvase-like protein [Vibrio cholerae O395]
gi|153216267|ref|ZP_01950360.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|153802592|ref|ZP_01957178.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|153819170|ref|ZP_01971837.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153823173|ref|ZP_01975840.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|153826577|ref|ZP_01979244.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|153828418|ref|ZP_01981085.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|227080676|ref|YP_002809227.1| Putative Holliday junction resolvase [Vibrio cholerae M66-2]
gi|229507104|ref|ZP_04396610.1| hypothetical protein VCF_002326 [Vibrio cholerae BX 330286]
gi|229509060|ref|ZP_04398548.1| hypothetical protein VCE_000463 [Vibrio cholerae B33]
gi|229512528|ref|ZP_04401999.1| hypothetical protein VCB_000168 [Vibrio cholerae TMA 21]
gi|229519728|ref|ZP_04409171.1| hypothetical protein VCC_003760 [Vibrio cholerae RC9]
gi|229525157|ref|ZP_04414562.1| hypothetical protein VCA_002768 [Vibrio cholerae bv. albensis
VL426]
gi|229530308|ref|ZP_04419696.1| hypothetical protein VCG_003428 [Vibrio cholerae 12129(1)]
gi|229606241|ref|YP_002876889.1| Holliday junction resolvase-like protein [Vibrio cholerae MJ-1236]
gi|254291177|ref|ZP_04961973.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|254850697|ref|ZP_05240047.1| holliday junction resolvase-like protein [Vibrio cholerae MO10]
gi|255744287|ref|ZP_05418240.1| putative Holliday junction resolvase [Vibrio cholera CIRS 101]
gi|261210043|ref|ZP_05924341.1| putative Holliday junction resolvase [Vibrio sp. RC341]
gi|262147288|ref|ZP_06028087.1| putative Holliday junction resolvase [Vibrio cholerae INDRE 91/1]
gi|262164082|ref|ZP_06031821.1| putative Holliday junction resolvase [Vibrio mimicus VM223]
gi|262167140|ref|ZP_06034854.1| putative Holliday junction resolvase [Vibrio cholerae RC27]
gi|262172420|ref|ZP_06040098.1| putative Holliday junction resolvase [Vibrio mimicus MB-451]
gi|262191077|ref|ZP_06049284.1| putative Holliday junction resolvase [Vibrio cholerae CT 5369-93]
gi|298501003|ref|ZP_07010804.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|32130070|sp|Q9KUP9|RUVX_VIBCH RecName: Full=Putative Holliday junction resolvase
gi|172047745|sp|A5F9G8|RUVX_VIBC3 RecName: Full=Putative Holliday junction resolvase
gi|254767532|sp|C3LRY3|RUVX_VIBCM RecName: Full=Putative Holliday junction resolvase
gi|9654892|gb|AAF93639.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121547449|gb|EAX57558.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121629126|gb|EAX61569.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|124114356|gb|EAY33176.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|124121855|gb|EAY40598.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|126510315|gb|EAZ72909.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|126519299|gb|EAZ76522.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|146316008|gb|ABQ20547.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|148876127|gb|EDL74262.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|149739669|gb|EDM53883.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|150422871|gb|EDN14822.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|227008564|gb|ACP04776.1| Putative Holliday junction resolvase [Vibrio cholerae M66-2]
gi|227012319|gb|ACP08529.1| Putative Holliday junction resolvase [Vibrio cholerae O395]
gi|229332081|gb|EEN97569.1| hypothetical protein VCG_003428 [Vibrio cholerae 12129(1)]
gi|229338738|gb|EEO03755.1| hypothetical protein VCA_002768 [Vibrio cholerae bv. albensis
VL426]
gi|229344417|gb|EEO09392.1| hypothetical protein VCC_003760 [Vibrio cholerae RC9]
gi|229350421|gb|EEO15370.1| hypothetical protein VCB_000168 [Vibrio cholerae TMA 21]
gi|229353985|gb|EEO18919.1| hypothetical protein VCE_000463 [Vibrio cholerae B33]
gi|229355849|gb|EEO20769.1| hypothetical protein VCF_002326 [Vibrio cholerae BX 330286]
gi|229368896|gb|ACQ59319.1| hypothetical protein VCD_001140 [Vibrio cholerae MJ-1236]
gi|254846402|gb|EET24816.1| holliday junction resolvase-like protein [Vibrio cholerae MO10]
gi|255738227|gb|EET93619.1| putative Holliday junction resolvase [Vibrio cholera CIRS 101]
gi|260840808|gb|EEX67350.1| putative Holliday junction resolvase [Vibrio sp. RC341]
gi|261893496|gb|EEY39482.1| putative Holliday junction resolvase [Vibrio mimicus MB-451]
gi|262024440|gb|EEY43127.1| putative Holliday junction resolvase [Vibrio cholerae RC27]
gi|262027610|gb|EEY46276.1| putative Holliday junction resolvase [Vibrio mimicus VM223]
gi|262031282|gb|EEY49897.1| putative Holliday junction resolvase [Vibrio cholerae INDRE 91/1]
gi|262033053|gb|EEY51584.1| putative Holliday junction resolvase [Vibrio cholerae CT 5369-93]
gi|297540251|gb|EFH76311.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|327483319|gb|AEA77726.1| Putative Holliday junction resolvase [Vibrio cholerae LMA3894-4]
Length = 140
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG AI A P E+ I I+GL
Sbjct: 2 SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + R +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLDTITPRAKKFAQRLHGR-FGLPVELHDERLSTTEARAELFAMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD +A +IL+ +
Sbjct: 121 NVDCQSAVIILESWFES 137
>gi|227505017|ref|ZP_03935066.1| possible Holliday junction resolvase [Corynebacterium striatum ATCC
6940]
gi|227198381|gb|EEI78429.1| possible Holliday junction resolvase [Corynebacterium striatum ATCC
6940]
Length = 180
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 12/158 (7%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENI 68
N ++D+GT RIG+A+SD A P + R+ + +L I ++
Sbjct: 13 PGNGRRLALDVGTVRIGVAVSDSNASLALPVETVSRETGFKDQDKGDIDRILELIREYHV 72
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV------YVPFVFWDERLTTVSAQQIL 122
++GLP ++ G+ V + + R P DERLTTV+A L
Sbjct: 73 VEVVVGLPRDLQGNGSKSVKHAKEIAFRIRRRLGKDETIGQPPVRMADERLTTVAATTAL 132
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESSK 159
VS KK + +D AA ILQ LD R + L+S
Sbjct: 133 RASGVSEKKGRKVIDQAAAVEILQSWLDARHNALQSDA 170
>gi|308094702|ref|ZP_05891280.2| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
gi|308095554|ref|ZP_05906770.2| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
gi|308126024|ref|ZP_05778717.2| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
gi|308126682|ref|ZP_05911773.2| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
gi|308085842|gb|EFO35537.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
gi|308090447|gb|EFO40142.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
gi|308107473|gb|EFO45013.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
gi|308113524|gb|EFO51064.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
Length = 145
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++GL
Sbjct: 6 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 65
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + R +P DERL+T A+ L M +
Sbjct: 66 PTDLHGKDLETITPRAKKFAKRLQGR-YGLPVELHDERLSTSEARAELFSMGGYKALSKG 124
Query: 135 KVDSIAAALILQEVLDRI 152
+D +A +IL+ + +
Sbjct: 125 NIDCQSAVVILESWFEAL 142
>gi|317487355|ref|ZP_07946146.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6]
gi|316921378|gb|EFV42673.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6]
Length = 142
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G KR G+A+SD G A PR ++ + ELL+ I E A +IGLP+N+
Sbjct: 4 LAIDYGQKRTGIAVSDTGGSMAFPRKTILMRTRAAFFEELLALIEAEATDAIVIGLPINL 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G E R F ++ R+ +P + +E L++ A++ L D S + +D
Sbjct: 64 DGEESLTTRQVRNFSKSLA-RRTTLPLFWMEEALSSYEAERDLRDAGRSAAQGRAVLDQQ 122
Query: 140 AAALILQEVLDR 151
AA ILQ LD+
Sbjct: 123 AAVRILQSFLDQ 134
>gi|312883850|ref|ZP_07743567.1| Holliday junction resolvase-like protein [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368308|gb|EFP95843.1| Holliday junction resolvase-like protein [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 140
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P E+ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEVTGTASPLKAFKANDGIPNWDEIEKQIKEWQPHLIVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P++++G + F + + R V DERL+T A+ L M +
Sbjct: 62 PMDLHGKALESITQRAKKFANRLHGR-FGVDVELHDERLSTTEARSELFAMGGYKALTKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 121 NVDCQSAVVILESWFE 136
>gi|262202251|ref|YP_003273459.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247]
gi|262085598|gb|ACY21566.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247]
Length = 143
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAA 70
SL + +D+G+ RIG+A+ DP A P + R + + + + A
Sbjct: 2 SLTRGRR-LGVDVGSVRIGVAVCDPDGILATPVETVARTPHNDDDIERIATLVDEYDAAE 60
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
I+GLP + G + R F + R V + DERLTTV+A Q + + K
Sbjct: 61 VIVGLPKTLRNEAGAAAEAARDFGDRLAARIAPVGVSYHDERLTTVTAHQAMRASGRNAK 120
Query: 131 KRIQKVDSIAAALILQEVLD 150
+D AA ILQ LD
Sbjct: 121 SSRAVIDQAAAVAILQGWLD 140
>gi|126434972|ref|YP_001070663.1| Holliday junction resolvase-like protein [Mycobacterium sp. JLS]
gi|167012736|sp|A3PZ45|RUVX_MYCSJ RecName: Full=Putative Holliday junction resolvase
gi|126234772|gb|ABN98172.1| Holliday junction resolvase YqgF [Mycobacterium sp. JLS]
Length = 169
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 65/148 (43%), Gaps = 1/148 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFI 72
ID+G R+G+A SDP A P + R+K + L +T +
Sbjct: 17 PGRGRRIGIDVGCVRVGVATSDPDGVLATPVETVRREKSSDRHVRRLAQLVTELEAVEVV 76
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP + GP H + R VP DERLTTVSAQ+ L + V K +
Sbjct: 77 VGLPRTLADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVSAQRSLREAGVRAKGQ 136
Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
+D +AA ILQ LD+ ++ G
Sbjct: 137 RAMIDQVAAVGILQSWLDQRRAALAAPG 164
>gi|239622021|ref|ZP_04665052.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296454024|ref|YP_003661167.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
longum JDM301]
gi|239515212|gb|EEQ55079.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296183455|gb|ADH00337.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
longum JDM301]
Length = 156
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG R+GLA+SDP FAHP + E+L+ I E++ I+GLPL
Sbjct: 8 LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQ 67
Query: 79 MNGSEGPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMN 126
M+G+EG R + N+ R + +P DERLTTVSA + L + +
Sbjct: 68 MDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAH 127
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153
+ K VD +A +ILQ LDR
Sbjct: 128 KASNKHRPVVDQQSAVVILQTALDRTR 154
>gi|257468001|ref|ZP_05632097.1| DNA integration/recombination/invertion protein [Fusobacterium
ulcerans ATCC 49185]
gi|317062287|ref|ZP_07926772.1| DNA integration/recombination/inversion protein [Fusobacterium
ulcerans ATCC 49185]
gi|313687963|gb|EFS24798.1| DNA integration/recombination/inversion protein [Fusobacterium
ulcerans ATCC 49185]
Length = 139
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ S+D+G RIG+A SD A P + RKK T+ + EN A ++G+P
Sbjct: 3 KKYISLDVGDVRIGVAKSDIMGIVATPLEVIDRKK-TKAVKRIKELCIQENTKALVVGIP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
+++G+E + R F+ + + + DERLTTVSA ++L + N ++ +
Sbjct: 62 KSLDGTEKRQAEKVREFIAKLNKEIEGLEIIEVDERLTTVSADRMLNESNKKGALEKRKV 121
Query: 136 VDSIAAALILQEVLD 150
VD IAAA+ILQ LD
Sbjct: 122 VDKIAAAIILQTFLD 136
>gi|313200415|ref|YP_004039073.1| holliday junction resolvase yqgf [Methylovorus sp. MP688]
gi|312439731|gb|ADQ83837.1| Holliday junction resolvase YqgF [Methylovorus sp. MP688]
Length = 172
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 1/143 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L + D G KRIG+A+ + AHP + + + + I I
Sbjct: 21 LTSEGTALAFDFGEKRIGVAVGEHLLGIAHPLTTIESEANDVRFAAITALINEWRPTVLI 80
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPL+++G E R F + D + +P V DERL++ A L + V +K+
Sbjct: 81 VGLPLSLDGEEHATSLLCRKFARRL-DGRFGLPVVMIDERLSSAEASSSLNETGVYGRKQ 139
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
+D +AA ILQ D +S L
Sbjct: 140 KVMLDQVAAQHILQSYFDTLSSL 162
>gi|253998341|ref|YP_003050404.1| Holliday junction resolvase-like protein [Methylovorus sp. SIP3-4]
gi|253985020|gb|ACT49877.1| Holliday junction resolvase YqgF [Methylovorus sp. SIP3-4]
Length = 172
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 1/143 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L + D G KRIG+A+ + AHP + + + + I I
Sbjct: 21 LTSEGTALAFDFGEKRIGVAVGEHLLGIAHPLTTIESEANDVRFAAISALINEWRPTVLI 80
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPL+++G E R F + D + +P V DERL++ A L + V +K+
Sbjct: 81 VGLPLSLDGEEHATSLLCRKFARRL-DGRFGLPVVMIDERLSSAEASSSLNETGVYGRKQ 139
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
+D +AA ILQ D +S L
Sbjct: 140 KVMLDQVAAQHILQSYFDTLSSL 162
>gi|88802640|ref|ZP_01118167.1| Holliday junction resolvase-like protein [Polaribacter irgensii
23-P]
gi|88781498|gb|EAR12676.1| Holliday junction resolvase-like protein [Polaribacter irgensii
23-P]
Length = 151
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 6/151 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M L L K L I +ID G KR G+A++D + A + ++ L
Sbjct: 1 MPCLKNVFLQKQLY-MARILAIDFGKKRTGIAVTDELQIIASGLTTVNTDELLPF---LK 56
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + E + +IG P M+ S+ F+ + +P DER T+ A Q
Sbjct: 57 EYSSKEKVGLILIGHPKQMDNSDSESEVLILPFIKKLEKLLPQIPLKRVDERFTSKMAFQ 116
Query: 121 ILIDMNVSRKKRIQK--VDSIAAALILQEVL 149
+ID + +K+R K VD I+A +ILQ L
Sbjct: 117 TMIDGGMKKKQRRNKAMVDEISATIILQSYL 147
>gi|325270162|ref|ZP_08136769.1| Holliday junction resolvase [Prevotella multiformis DSM 16608]
gi|324987463|gb|EGC19439.1| Holliday junction resolvase [Prevotella multiformis DSM 16608]
Length = 139
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP R A+ + + L +I E + +IG
Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRIIANGLATVATSGLFDF---LTQYIAEEPVDRLVIGR 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P+ +G + FV+ +P ++DER T+V A Q LI V +K R
Sbjct: 58 PVQPSGEPSENLVRVEQFVNRWRKAHPELPIDYYDERFTSVLAHQALIAGGVKKKTRREN 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134
>gi|300858566|ref|YP_003783549.1| hypothetical protein cpfrc_01149 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686020|gb|ADK28942.1| hypothetical protein cpfrc_01149 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206278|gb|ADL10620.1| Putative Holliday junction resolvase [Corynebacterium
pseudotuberculosis C231]
gi|302330835|gb|ADL21029.1| Putative Holliday junction resolvase [Corynebacterium
pseudotuberculosis 1002]
gi|308276520|gb|ADO26419.1| Putative Holliday junction resolvase [Corynebacterium
pseudotuberculosis I19]
Length = 197
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
N ID+GT RIG+A SD R A P + RK + LL I +
Sbjct: 13 PGNGRRLGIDVGTVRIGVAASDRDARLAMPVETVPRKTGLRDRDQGDIDRLLEIIREYAV 72
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILID 124
++GLP ++ G+ V + + + +P DERLTTV A Q L
Sbjct: 73 VEVVVGLPRDLKGNGSKSVKHAKDIAFRISRRLQASESSIPVRLADERLTTVVATQALRA 132
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD 150
+S K + +D AA ILQ LD
Sbjct: 133 SGISEKTGRKVIDQAAAVEILQSWLD 158
>gi|28899387|ref|NP_798992.1| Holliday junction resolvase-like protein [Vibrio parahaemolyticus
RIMD 2210633]
gi|153839187|ref|ZP_01991854.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|32130015|sp|Q87LJ9|RUVX_VIBPA RecName: Full=Putative Holliday junction resolvase
gi|28807623|dbj|BAC60876.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149747289|gb|EDM58273.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|328474083|gb|EGF44888.1| Holliday junction resolvase-like protein [Vibrio parahaemolyticus
10329]
Length = 141
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + R +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLETITPRAKKFAKRLQGR-YGLPVELHDERLSTSEARAELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +A +IL+ + +
Sbjct: 121 NIDCQSAVVILESWFEAL 138
>gi|37681055|ref|NP_935664.1| Holliday junction resolvase-like protein [Vibrio vulnificus YJ016]
gi|62901000|sp|Q7MHJ8|RUVX_VIBVY RecName: Full=Putative Holliday junction resolvase
gi|37199805|dbj|BAC95635.1| uncharacterized protein conserved in bacteria [Vibrio vulnificus
YJ016]
Length = 140
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P E+ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + F + R +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKALETITPRAKKFAQRLQGR-FALPVELHDERLSTTEARSELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 121 NVDCQSAVIILESWFE 136
>gi|189439478|ref|YP_001954559.1| putative endonuclease for recombination [Bifidobacterium longum
DJO10A]
gi|227545931|ref|ZP_03975980.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Bifidobacterium longum subsp. infantis ATCC 55813]
gi|312132885|ref|YP_004000224.1| endonuclease for recombination [Bifidobacterium longum subsp.
longum BBMN68]
gi|317482214|ref|ZP_07941236.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp.
12_1_47BFAA]
gi|32130036|sp|Q8G5X0|RUVX_BIFLO RecName: Full=Putative Holliday junction resolvase
gi|226725490|sp|B3DSE2|RUVX_BIFLD RecName: Full=Putative Holliday junction resolvase
gi|189427913|gb|ACD98061.1| Putative endonuclease for recombination [Bifidobacterium longum
DJO10A]
gi|227213565|gb|EEI81414.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Bifidobacterium longum subsp. infantis ATCC 55813]
gi|311773856|gb|ADQ03344.1| Putative endonuclease for recomBination [Bifidobacterium longum
subsp. longum BBMN68]
gi|316916352|gb|EFV37752.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp.
12_1_47BFAA]
Length = 152
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG R+GLA+SDP FAHP + E+L+ I E++ I+GLPL
Sbjct: 4 LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQ 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMN 126
M+G+EG R + N+ R + +P DERLTTVSA + L + +
Sbjct: 64 MDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAH 123
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153
+ K VD +A +ILQ LDR
Sbjct: 124 KASNKHRPVVDQQSAVVILQTALDRTR 150
>gi|213692472|ref|YP_002323058.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|254767498|sp|B7GSA0|RUVX_BIFLI RecName: Full=Putative Holliday junction resolvase
gi|213523933|gb|ACJ52680.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 151
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG R+GLA+SDP FAHP + E+L+ I E++ I+GLPL
Sbjct: 4 LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQ 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMN 126
M+G+EG R + N+ R + +P DERLTTVSA + L + +
Sbjct: 64 MDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAH 123
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153
+ K VD +A +ILQ LDR
Sbjct: 124 KASNKHRPVVDQQSAVVILQTALDRTR 150
>gi|187922872|ref|YP_001894514.1| Holliday junction resolvase-like protein [Burkholderia phytofirmans
PsJN]
gi|226725498|sp|B2T0I5|RUVX_BURPP RecName: Full=Putative Holliday junction resolvase
gi|187714066|gb|ACD15290.1| Holliday junction resolvase YqgF [Burkholderia phytofirmans PsJN]
Length = 146
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A P + + + I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRRARPLVIVQNRSREYRFEAVGKLIAEWKPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+ + F + + + + +P + DER ++V A+ + N R
Sbjct: 67 LPFHPDGAPHEMTQLAKRFGNQL-NGRFNLPVTWVDERYSSVEAKAEIRAGNG----RAD 121
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASIILQQYLDGLS 140
>gi|159037444|ref|YP_001536697.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205]
gi|157916279|gb|ABV97706.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205]
Length = 153
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFII 73
+D+G R+G+A SDP A P L R + V EL + + ++
Sbjct: 10 LGVDVGQVRVGVARSDPHGVLATPLVTLARDRDAAPDAVPSDIAELAALVAEHEAVEVVV 69
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+N+ G GP + +V +++ VP DER++TV A + L + V +++
Sbjct: 70 GLPVNLAGRHGPAAVQVQEYVGRLVEVISPVPVTLADERMSTVVASRRLAERGVRGRRQR 129
Query: 134 QKVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 130 AVVDQAAAVEILQSWLD 146
>gi|288918209|ref|ZP_06412564.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f]
gi|288350379|gb|EFC84601.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f]
Length = 200
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLP 76
+D+G+ R+G+A SDP A P L R + + EL + + ++GLP
Sbjct: 44 IGVDVGSVRVGVAASDPDGLLAVPVTTLRRDASGRRHKDVDELADIVRDRHAVEVVVGLP 103
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
++G EG V R + + R VP DERLTTV A + + + + + R + V
Sbjct: 104 RQLSGEEGEAVRRARQYAEVLSTRVAPVPVRLVDERLTTVVAHRRMAERGLRSRARRELV 163
Query: 137 DSIAAALILQEVLD 150
D AA ILQ LD
Sbjct: 164 DQEAAVQILQHHLD 177
>gi|145594372|ref|YP_001158669.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440]
gi|145303709|gb|ABP54291.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440]
Length = 153
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENIAAFII 73
+D+G R+G+A SDP A P L R + V EL + +T ++
Sbjct: 10 LGVDVGQVRVGVARSDPHGVLATPLVTLARDRAVAPEAVPSDMAELAALVTEHEAVEVVV 69
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+N+ G +GP +A+V +++ VP DER++TV A + L + V +++
Sbjct: 70 GLPVNLAGRQGPAAVHVQAYVGRLVEVISPVPVTLADERMSTVVASRRLAERGVRGRRQR 129
Query: 134 QKVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 130 AVVDQAAAVEILQSWLD 146
>gi|27904966|ref|NP_778092.1| hypothetical protein bbp492 [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|32130020|sp|Q89A50|RUVX_BUCBP RecName: Full=Putative Holliday junction resolvase
gi|27904364|gb|AAO27197.1| hypothetical 16.0 kDa protein [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 137
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D GTK IG+A+ A P + K +L I A ++G PLN
Sbjct: 3 IIALDFGTKNIGVAVGQNYTNTARSLPSIKVKNKKLNIEKLNKLIDEWKPNAIVVGHPLN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G++ + F + +P + DERL+TV A+ IL + + + +++DS
Sbjct: 63 IDGTKQKITQCSENFSKKL-KNIFKIPILLHDERLSTVEAKAILFEKYGYKSLKKERIDS 121
Query: 139 IAAALILQEVL 149
++A +IL+
Sbjct: 122 MSAVIILESWF 132
>gi|261337333|ref|ZP_05965217.1| putative Holliday junction resolvase [Bifidobacterium gallicum DSM
20093]
gi|270277707|gb|EFA23561.1| putative Holliday junction resolvase [Bifidobacterium gallicum DSM
20093]
Length = 156
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG RIG A+SDP FAHP + VR E+L+ I E + ++GLPL
Sbjct: 4 LGLDLGNARIGTALSDPQLTFAHPAGNITVRGNYGVEFDEVLAIIEDEQVDHVVVGLPLQ 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-----------VP-FVFWDERLTTVSAQQILIDMN 126
++G+EG R +V +I R V +P DERLTTV A + L D
Sbjct: 64 LDGTEGASARKARTWVRELIHRLVQEVADPRSGITTMPSVTLCDERLTTVDAHRRLHDAQ 123
Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
V + VD +A ILQ LD+
Sbjct: 124 VQGRNHRAMVDQQSAVEILQSALDQ 148
>gi|188995932|ref|YP_001930184.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis
ATCC 33277]
gi|188595612|dbj|BAG34587.1| probable endonuclease [Porphyromonas gingivalis ATCC 33277]
Length = 150
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 5/141 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
I +ID G KR GLA++DP + + + L +++ E + F+
Sbjct: 10 CTDMGRILAIDYGRKRTGLAVTDPLKIIPGGLTTVPTHTLLDF---LRDYVSREPVERFV 66
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP MN E + R F + +P + DER T+ AQ+ +++ + + KR
Sbjct: 67 LGLPRRMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMKR 126
Query: 133 IQK--VDSIAAALILQEVLDR 151
K VD ++A +ILQ LD
Sbjct: 127 RDKALVDEVSAVIILQSYLDN 147
>gi|282877696|ref|ZP_06286511.1| RNAse YqgF [Prevotella buccalis ATCC 35310]
gi|281300268|gb|EFA92622.1| RNAse YqgF [Prevotella buccalis ATCC 35310]
Length = 138
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I SID G KR G+A++DP + A+ + + L ++ E + +IG P+
Sbjct: 2 RILSIDYGKKRTGIAVTDPLQIIANGLATVSTSTL---FDYLKDYVAREEVERIVIGKPM 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
NG + FV+ +P ++DER T+V A + ++ + +K R K
Sbjct: 59 QTNGKPSENMARVEQFVNRWRKAMPQIPIEYYDERFTSVLAHKAMLASGIGKKARQNKAL 118
Query: 136 VDSIAAALILQEVLDRIS 153
VD I+A +ILQ ++
Sbjct: 119 VDEISATIILQSYMESKR 136
>gi|209523862|ref|ZP_03272415.1| Holliday junction resolvase YqgF [Arthrospira maxima CS-328]
gi|209495894|gb|EDZ96196.1| Holliday junction resolvase YqgF [Arthrospira maxima CS-328]
Length = 148
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G +RIG+A D A +VR + + I + ++GLP
Sbjct: 13 LGLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLAQFQAIIQQRQVQILVVGLPYLS 72
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG G + + + + + + +P + DERLT+V A+Q+L + + +D
Sbjct: 73 NGELGTQARQIQKYTRRL-QKSLALPVEYVDERLTSVEAEQMLKGQKIPLSENKALIDRK 131
Query: 140 AAALILQEVLDRIS 153
AAALILQ+ LD+
Sbjct: 132 AAALILQQWLDQRR 145
>gi|325851999|ref|ZP_08171082.1| RNAse H domain protein, YqgF family [Prevotella denticola CRIS
18C-A]
gi|325484555|gb|EGC87471.1| RNAse H domain protein, YqgF family [Prevotella denticola CRIS
18C-A]
Length = 139
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP R A+ + + L +I TE + +IG
Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRIIANGLATVATSGLFDF---LTQYIETETVERLVIGR 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P+ +G + FV+ +P ++DER T+V A Q +I V +K R
Sbjct: 58 PVQPDGRPSENLGRVEQFVNRWRKAHPELPVDYYDERFTSVIAHQAMIAGGVKKKTRREN 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134
>gi|163756827|ref|ZP_02163936.1| Holliday junction resolvase-like protein [Kordia algicida OT-1]
gi|161323216|gb|EDP94556.1| Holliday junction resolvase-like protein [Kordia algicida OT-1]
Length = 135
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + A + + + L ++ EN+ F+IG
Sbjct: 1 MARILAIDYGKKRTGIAVTDEMQLIASGLTTVRTHDLIKF---LKEYVAKENVELFLIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + F+ + +P DER T+ A Q +ID + +K+R K
Sbjct: 58 PKQMNNEASESEALIKEFIRLLTKALPAIPIKRVDERFTSKMAFQTMIDSGLKKKQRQNK 117
Query: 136 --VDSIAAALILQEVL 149
+D I+A +ILQ L
Sbjct: 118 SLIDEISATIILQSYL 133
>gi|83718957|ref|YP_442009.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis E264]
gi|167618948|ref|ZP_02387579.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis Bt4]
gi|257138192|ref|ZP_05586454.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis E264]
gi|146325558|sp|Q2SYJ0|RUVX_BURTA RecName: Full=Putative Holliday junction resolvase
gi|83652782|gb|ABC36845.1| conserved hypothetical protein TIGR00250, putative [Burkholderia
thailandensis E264]
Length = 146
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ +L + + + D G KRIG+AI + R A + + I
Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ F + + + + +P + DER ++V A+ L
Sbjct: 61 DALVVGLPLHPDGAPHEMTQRALRFGNQL-NGRFNLPVSWVDERYSSVEARAGLRARG-- 117
Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153
+VD+ AA +ILQ+ LD +
Sbjct: 118 --DAANRVDAEAARVILQQFLDGLP 140
>gi|313674137|ref|YP_004052133.1| holliday junction resolvase yqgf [Marivirga tractuosa DSM 4126]
gi|312940835|gb|ADR20025.1| Holliday junction resolvase YqgF [Marivirga tractuosa DSM 4126]
Length = 137
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +ID GTKR+GLA++DP + A P + K + Q L ++ ++E + A + G P
Sbjct: 3 RVLAIDYGTKRVGLAVTDPLKIIASPLEMIHSKDLVQY---LANYFSSEEVEAVVCGYPT 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
N G AF++ + +P DE ++ A Q +I +RK+R +K
Sbjct: 60 NEEGEATDATRHVDAFINLFKKKFPTMPLHLQDESFSSQEAMQAMIHSGSNRKQRNKKSG 119
Query: 136 -VDSIAAALILQEVLDR 151
+D I+AA+ILQ+ L+
Sbjct: 120 NIDKISAAIILQQFLEE 136
>gi|237736820|ref|ZP_04567301.1| DNA integration/recombination/invertion protein [Fusobacterium
mortiferum ATCC 9817]
gi|229420682|gb|EEO35729.1| DNA integration/recombination/invertion protein [Fusobacterium
mortiferum ATCC 9817]
Length = 139
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIG+A SD A P + R+KV + + + EN + +IG+P
Sbjct: 3 KKYVALDVGDVRIGVAKSDIMGILATPLEVIDRRKV-KAVKRIEEILIQENTKSLVIGIP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
+++G+E + R F+ + + DERLTTVSA ++L + N ++ +
Sbjct: 62 KSLDGTEKRQAEKVREFIEKLNKSIEGLEIFEVDERLTTVSADRLLNETNKKGALEKRKV 121
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AAA+ILQ LDR
Sbjct: 122 VDKVAAAIILQTFLDRKK 139
>gi|297621335|ref|YP_003709472.1| Putative Holliday junction resolvase [Waddlia chondrophila WSU
86-1044]
gi|297376636|gb|ADI38466.1| Putative Holliday junction resolvase [Waddlia chondrophila WSU
86-1044]
Length = 148
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 8/145 (5%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITT------ENIAA 70
I ID G KRIGLAISD A KK+ +T L+ + +
Sbjct: 4 RIIGIDYGMKRIGLAISDETHLIASAIETFEASKKMEETVAALVKRLEEHQKEKGYELKE 63
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++G PL MNG G F + + +P + WDERLT+V A++ +++ + +RK
Sbjct: 64 IVVGFPLKMNGKAGFISDEVTLFAETLSKA-LSIPIIKWDERLTSVQAERAMMEGSYNRK 122
Query: 131 KRIQKVDSIAAALILQEVLDRISFL 155
KR +K+D I+A +ILQ LD + +
Sbjct: 123 KRTKKLDQISAVIILQNYLDSKNLI 147
>gi|197335536|ref|YP_002155189.1| hypothetical protein VFMJ11_0433 [Vibrio fischeri MJ11]
gi|226695315|sp|B5F9S6|RUVX_VIBFM RecName: Full=Putative Holliday junction resolvase
gi|197317026|gb|ACH66473.1| conserved hypothetical protein [Vibrio fischeri MJ11]
Length = 141
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P + T ++ I N ++GL
Sbjct: 3 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWNPDLIVVGL 62
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G E + F + + R DERL+T A+ L + +
Sbjct: 63 PTDLHGKELDTITPRAKKFANRLHGR-FGKQVELHDERLSTAEARADLFEFGGYKALSKG 121
Query: 135 KVDSIAAALILQEVLDR 151
+D +A +IL+ +
Sbjct: 122 NIDCQSAVVILESWFEN 138
>gi|120556668|ref|YP_961019.1| Holliday junction resolvase YqgF [Marinobacter aquaeolei VT8]
gi|167012734|sp|A1U763|RUVX_MARAV RecName: Full=Putative Holliday junction resolvase
gi|120326517|gb|ABM20832.1| Holliday junction resolvase YqgF [Marinobacter aquaeolei VT8]
Length = 143
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
N+ + + D GT+RIG+A P L + ++ + + ++
Sbjct: 4 PGNRRLLAFDFGTRRIGVASGQEMLGTGQPLAMLPARDGIPDWQQIEALLADWQPDIVLV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+ +E R F + R +V DERLT+ A+ ++ SR
Sbjct: 64 GLPLNMDDTENEMCARARKFGKRLHGR-YHVTVEMVDERLTSYEAKGEVMAGGGSRDFGR 122
Query: 134 QKVDSIAAALILQEV 148
VD AA LIL+
Sbjct: 123 HGVDDRAAVLILETW 137
>gi|74318598|ref|YP_316338.1| Holliday junction resolvase-like protein [Thiobacillus
denitrificans ATCC 25259]
gi|146325622|sp|Q3SFS3|RUVX_THIDA RecName: Full=Putative Holliday junction resolvase
gi|74058093|gb|AAZ98533.1| Holliday junction resolvase YqgF [Thiobacillus denitrificans ATCC
25259]
Length = 145
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + DLG KR G+A + AHP + + + A F++GL
Sbjct: 7 HGTVLAFDLGLKRTGVASGELAIGIAHPLTVIQAESTDARMAAIEKLAAEWQPALFVLGL 66
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +GSE R F + + + P DERLT+ +A+ L + KK
Sbjct: 67 PTRADGSENEMTRVARNFARRL-ESRFERPVFLIDERLTSATAESELHARGIHGKKNKAL 125
Query: 136 VDSIAAALILQEVLD 150
D++AA LILQ D
Sbjct: 126 TDAVAAQLILQGFFD 140
>gi|256391574|ref|YP_003113138.1| Holliday junction resolvase-like protein [Catenulispora acidiphila
DSM 44928]
gi|256357800|gb|ACU71297.1| Holliday junction resolvase YqgF [Catenulispora acidiphila DSM
44928]
Length = 171
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 1/142 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+GT RIG+A D A P + + + L + ++GLP ++
Sbjct: 21 LGVDVGTVRIGVASCDRDGLLATPVETVKAEPRRASLDRLAALAAEYEAFEIVVGLPRSL 80
Query: 80 NGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G EGP RA+ +++ R P DERL+TV+A Q L V KK VD
Sbjct: 81 SGGEGPAAAKIRAYARDLVRRLGPGTPVRLVDERLSTVTATQGLRASGVKAKKGRSVVDQ 140
Query: 139 IAAALILQEVLDRISFLESSKG 160
AA +ILQ LD G
Sbjct: 141 AAAVVILQNALDAERMSGRPPG 162
>gi|86609208|ref|YP_477970.1| Holliday junction resolvase-like protein [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|146325617|sp|Q2JKS4|RUVX_SYNJB RecName: Full=Putative Holliday junction resolvase
gi|86557750|gb|ABD02707.1| conserved hypothetical protein TIGR00250 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 170
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G +RIG+A SD A + R+ +++ ++ +I ++G+PL
Sbjct: 17 LGLDVGNRRIGVAGSDRLGLLATGLGVIQRRSLSEDIAQVQEWIRRRQATVVVVGIPLLA 76
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + FV + V +P V +E L+T A+ L + + K + +D
Sbjct: 77 DGSVGSQARKVQRFVRAL-QVAVDLPIVTVNEYLSTAQAEWDLREAGIPAKAQKGLIDQQ 135
Query: 140 AAALILQEVLDRISF 154
+AA+ILQ LD
Sbjct: 136 SAAVILQTWLDERRA 150
>gi|59711040|ref|YP_203816.1| Holliday junction resolvase-like protein [Vibrio fischeri ES114]
gi|62900895|sp|Q5E7R8|RUVX_VIBF1 RecName: Full=Putative Holliday junction resolvase
gi|59479141|gb|AAW84928.1| predicted Holliday junction resolvase [Vibrio fischeri ES114]
Length = 141
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P + T ++ I N ++GL
Sbjct: 3 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWNPDLIVVGL 62
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G E + F + + R DERL+T A+ L + +
Sbjct: 63 PTDLHGKELDTITPRAKKFANRLHGR-FGKQVELHDERLSTAEARADLFEFGGYKALSKG 121
Query: 135 KVDSIAAALILQEVLDR 151
+D +A +IL+ +
Sbjct: 122 NIDCQSAVVILESWFEN 138
>gi|110637112|ref|YP_677319.1| Holliday junction resolvase-like protein [Cytophaga hutchinsonii
ATCC 33406]
gi|118597208|sp|Q11X87|RUVX_CYTH3 RecName: Full=Putative Holliday junction resolvase
gi|110279793|gb|ABG57979.1| possible Holliday junction resolvase [Cytophaga hutchinsonii ATCC
33406]
Length = 152
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I + D GTKRIG+A +DP + A+ + K V + L ++ TE + AF++GL
Sbjct: 1 MARILAFDFGTKRIGIASTDPMQIIANALDTVHPKDV---VVYLKKYLNTEPVEAFVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + E + +AF++ + P DER T+ A ++ VS+K R K
Sbjct: 58 PRTLQNEESSNAANVKAFINLIKKNFPQTPIYGVDERFTSSMAFDTMLAGGVSKKGRRDK 117
Query: 136 --VDSIAAALILQEVLDR 151
+D I+A +ILQ +++
Sbjct: 118 ATIDKISATIILQSFMEQ 135
>gi|237755542|ref|ZP_04584161.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237692305|gb|EEP61294.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 145
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 5/139 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G KRIG+A+SDP A P F++ + ++ I I+ +IGL
Sbjct: 1 MSRILGLDIGLKRIGVAVSDPFGVTATPLEFIL--NDEKVFEKINDLIKNYKISKIVIGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
PL + G EG + T+ F N+ + + +F DER T+ A++ L +K + +
Sbjct: 59 PLTLKGEEGEQARYTKDFAENLKNHIPQDIEIIFIDERFTSSLAEKTL--SQTKKKNKKE 116
Query: 135 KVDSIAAALILQEVLDRIS 153
K+DS++A ILQ LDR+S
Sbjct: 117 KIDSLSAVFILQTYLDRLS 135
>gi|283782872|ref|YP_003373626.1| RNAse YqgF [Gardnerella vaginalis 409-05]
gi|298253345|ref|ZP_06977137.1| endonuclease [Gardnerella vaginalis 5-1]
gi|283441449|gb|ADB13915.1| RNAse YqgF [Gardnerella vaginalis 409-05]
gi|297532740|gb|EFH71626.1| endonuclease [Gardnerella vaginalis 5-1]
Length = 152
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 73/144 (50%), Gaps = 13/144 (9%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
IDLG R+GLA+SDPG FAHP + V E+L I N+ +IGLPL
Sbjct: 4 LGIDLGDARVGLALSDPGLTFAHPIGNVQVFGDSFHAIDEVLEVIEDNNVEKVVIGLPLQ 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126
++G+EG + N+I R + V+ DERLTTVSA + L+ +
Sbjct: 64 LDGTEGKSAKKALRWGKNLIKRMQILHDEKDWALDYMPEVVWKDERLTTVSAHRQLLQAD 123
Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
+S KK VD +A LILQ LD
Sbjct: 124 LSTKKHRPMVDQQSAVLILQSALD 147
>gi|150007310|ref|YP_001302053.1| Holliday junction resolvase-like protein [Parabacteroides
distasonis ATCC 8503]
gi|167012744|sp|A6L9R7|RUVX_PARD8 RecName: Full=Putative Holliday junction resolvase
gi|149935734|gb|ABR42431.1| putative endonuclease [Parabacteroides distasonis ATCC 8503]
Length = 140
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A +D + A+ + +V + L +I+ E + F++GL
Sbjct: 1 MGRIIAIDYGRKRTGIAATDILQMIANGVATVPSGEVVKY---LSDYISREPVDLFVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
MN + AFV ++ +P ++DER T+V A + +++ + +KKR
Sbjct: 58 RKQMNNEPSENMKYVEAFVTHLKRTIPSIPVTYYDERFTSVLAHKAMLEGGLKKKKRQDK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ +
Sbjct: 118 GLVDEISAVIILQAYLESKKY 138
>gi|87307204|ref|ZP_01089349.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM
3645]
gi|87289944|gb|EAQ81833.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM
3645]
Length = 159
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ IA ID GT RIG+AI+DP R A P R+ + E I F+
Sbjct: 9 IPTVGRIAGIDFGTVRIGVAITDPDRILASPFENYTRRSLKIDRQYFEELAKLERIVLFV 68
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP++M+G+E + R F + R VP V++DER TT A+ L + ++++K+
Sbjct: 69 VGLPVHMSGNESGKSGEARKFGQ-WLGRITGVPIVYYDERFTTSIAKDYLAGLGMTKQKK 127
Query: 133 IQKVDSIAAALILQEVLDR 151
+D +AA ++L L+
Sbjct: 128 KAVIDKLAAQILLTAYLEN 146
>gi|86133857|ref|ZP_01052439.1| uncharacterized protein family (UPF0081) [Polaribacter sp. MED152]
gi|85820720|gb|EAQ41867.1| uncharacterized protein family (UPF0081) [Polaribacter sp. MED152]
Length = 136
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D G R G+A++D + A + ++ L +++ E + ++G
Sbjct: 1 MGRILALDFGKVRTGIAVTDELQIIASGLKTVATNELLPF---LKNYLKQEKVELILLGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P M+ S+ + F+ + +P DER T+ A Q +ID + +K+R K
Sbjct: 58 PKQMDNSDSESEVLIKPFLEKLEKTFPKIPLKRVDERFTSKMAFQTMIDSGLKKKQRRNK 117
Query: 136 --VDSIAAALILQEVL 149
VD I+A +ILQ L
Sbjct: 118 ALVDEISATIILQSYL 133
>gi|302877381|ref|YP_003845945.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans
ES-2]
gi|302580170|gb|ADL54181.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans
ES-2]
Length = 170
Score = 147 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GT+RIG+A+ + A P + +K + + A ++GLP
Sbjct: 17 GTLLAFDFGTQRIGVAVGNTFSSSAEPLTTIAEEKNELRFSAITKLVAEWQPCALVVGLP 76
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +GS + F + R + + DER ++++A + L V + + +
Sbjct: 77 CSDDGSPHELTALCQRFAKRLHGR-YGLTTLLVDERYSSLAASEQLNRQGVRGRDQKALI 135
Query: 137 DSIAAALILQEVLDR 151
D AA ILQ D
Sbjct: 136 DQYAAQQILQAYFDE 150
>gi|227549180|ref|ZP_03979229.1| Holliday junction resolvase family protein [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078740|gb|EEI16703.1| Holliday junction resolvase family protein [Corynebacterium
lipophiloflavum DSM 44291]
Length = 164
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 7/151 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENI 68
N +D+GT RIG+A+SD R A P + R L+ I
Sbjct: 13 PGNGRRIGLDVGTVRIGVAVSDRDARLAMPVETVDRVTNFGDDDGADVDRLVELIGFYGA 72
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP ++ G+ V + R VP DERLTTV+A L VS
Sbjct: 73 VEVVVGLPRDLKGNGSKSVKHAEDIAARLRAR-CGVPVRMGDERLTTVAATHALRASGVS 131
Query: 129 RKKRIQKVDSIAAALILQEVLD-RISFLESS 158
K + +D AA ILQ LD R++ L+ +
Sbjct: 132 AKAGRKVIDQAAAVEILQSWLDGRLTTLKET 162
>gi|255026681|ref|ZP_05298667.1| Holliday junction resolvase-like protein [Listeria monocytogenes
FSL J2-003]
Length = 114
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + + + ++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
NMN + GPR S++ + + + ++ +P V WDERLTT +A++ LI+ +VSRKKR
Sbjct: 61 NMNNTIGPRAESSKIYAEVL-EARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 114
>gi|258647931|ref|ZP_05735400.1| putative Holliday junction resolvase [Prevotella tannerae ATCC
51259]
gi|260851770|gb|EEX71639.1| putative Holliday junction resolvase [Prevotella tannerae ATCC
51259]
Length = 138
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + + + ++ L ++ T E++ F+IGL
Sbjct: 1 MSRILAIDYGKKRTGIAVTDILQIIPNGLTTVATHELLNF---LKAYTTKEDVERFVIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NG AF + +P F+DER T+ A Q ++ + +K+R +K
Sbjct: 58 PRQTNGKPSENFPRVEAFAKQLEQHFPTIPITFYDERYTSTLAHQAMLAGGLGKKRRQEK 117
Query: 136 --VDSIAAALILQEVLDRIS 153
VD I+A +ILQ ++
Sbjct: 118 ALVDEISACIILQSYMESKK 137
>gi|304382926|ref|ZP_07365408.1| Holliday junction resolvase [Prevotella marshii DSM 16973]
gi|304335951|gb|EFM02199.1| Holliday junction resolvase [Prevotella marshii DSM 16973]
Length = 140
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I SID G KR GLA++DP + + ++ + L +++ E + +IG P
Sbjct: 5 RILSIDYGKKRTGLAVTDPLQMICGGLATVPTSELFKF---LQTYMEKEPVERIVIGEPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
NG + + FV+ +VP F+DER T++ A + ++D + +K R K
Sbjct: 62 QPNGMPSENMARVQQFVNRWRKAVPHVPIEFYDERFTSLLAHKAMLDGGLKKKARRDKAL 121
Query: 136 VDSIAAALILQEVLDRIS 153
VD I+A +ILQ L+ I
Sbjct: 122 VDEISATIILQSYLESIR 139
>gi|312131456|ref|YP_003998796.1| holliday junction resolvase yqgf [Leadbetterella byssophila DSM
17132]
gi|311908002|gb|ADQ18443.1| Holliday junction resolvase YqgF [Leadbetterella byssophila DSM
17132]
Length = 140
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G R GLA++DP + A + K Q L +I E + A ++GL
Sbjct: 1 MGRILAIDYGKVRTGLAVTDPLQIIATALETV---KTDQLINYLERYIQNEEVDALVLGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
PL++ + P R+F + D+ +P F DER T+ A LI V +K R
Sbjct: 58 PLSLRSEDTPTTTMVRSFGEVLKDKFPDLPLHFIDERFTSKMASDTLISSGVKKKDRKVK 117
Query: 134 QKVDSIAAALILQEVL 149
D I+A +ILQ L
Sbjct: 118 GNTDLISAVIILQSYL 133
>gi|269121338|ref|YP_003309515.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
gi|268615216|gb|ACZ09584.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
Length = 137
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G RIG+A SD A P + R + + EN ++G+
Sbjct: 1 MKKYLGLDVGDVRIGVAKSDILGILATPLEVINRNDTDP-VKRIKELLQQENTNGLVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P +++G+ +V F+ + + + DER TTV A+ L + + ++R +
Sbjct: 60 PKSLDGTVKRQVEKVNEFIEELKKNIDNLEIITVDERYTTVEAEHYLRNYSKKNPRERRK 119
Query: 135 KVDSIAAALILQEVLD 150
VD +AA++ILQ+ LD
Sbjct: 120 VVDMVAASIILQKFLD 135
>gi|311748399|ref|ZP_07722184.1| putative Holliday junction resolvase [Algoriphagus sp. PR1]
gi|126576911|gb|EAZ81159.1| putative Holliday junction resolvase [Algoriphagus sp. PR1]
Length = 137
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +IDLGTKR GLA++DP + A+P + K+ + ++I E + ++GLP
Sbjct: 3 RVLAIDLGTKRTGLAVTDPLKMLANPLETIETFKLIDF---IKAYIAKEEVDTLVLGLPT 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
+NG + A + DER T+ A Q +I M +K R +K
Sbjct: 60 KLNGKDNEMTPKVMAMKTKLEKNFPSQKVELVDERFTSKMAMQSMITMGSKKKDRREKAG 119
Query: 136 -VDSIAAALILQEVLDR 151
+D ++AA+ILQ L+R
Sbjct: 120 NLDKVSAAIILQSYLER 136
>gi|291456670|ref|ZP_06596060.1| putative Holliday junction resolvase [Bifidobacterium breve DSM
20213]
gi|291381947|gb|EFE89465.1| putative Holliday junction resolvase [Bifidobacterium breve DSM
20213]
Length = 150
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG R+GLA+SDP FAHP + E+L+ + E++ I+GLPL
Sbjct: 4 LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVVEDEHVTHIIVGLPLQ 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDR---------KVYVP-FVFWDERLTTVSAQQILIDMNVS 128
M+G+EG R + N+ R + +P V DERLTTVSA + L + +
Sbjct: 64 MDGTEGKSAKKARRWAVNLEKRLRSEREESQEPQIPQVVLVDERLTTVSAHRQLFEAQKA 123
Query: 129 RKKRIQKVDSIAAALILQEVLDR 151
K VD +A +ILQ LDR
Sbjct: 124 STKHRPMVDQQSAVVILQTALDR 146
>gi|154707335|ref|YP_001425496.1| Holliday junction resolvase-like protein [Coxiella burnetii Dugway
5J108-111]
gi|212213538|ref|YP_002304474.1| Holliday junction resolvase-like protein [Coxiella burnetii
CbuG_Q212]
gi|226725507|sp|B6J3V7|RUVX_COXB2 RecName: Full=Putative Holliday junction resolvase
gi|226725508|sp|A9KDE8|RUVX_COXBN RecName: Full=Putative Holliday junction resolvase
gi|154356621|gb|ABS78083.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111]
gi|212011948|gb|ACJ19329.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
Length = 141
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 15 PNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
PNQ + D G KRIG+A+ A+ L + ++ I T + +
Sbjct: 2 PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVLV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P NM+GSE + R F + R +P DERLTT+ A++ + ++ KR
Sbjct: 62 VGIPYNMDGSEQTLTFAARKFARKLQTR-FGLPVSMVDERLTTIEAKRQWYEQGLT--KR 118
Query: 133 IQKVDSIAAALILQEVL 149
Q +D+ AA LIL++ L
Sbjct: 119 PQHLDNYAAKLILEQWL 135
>gi|114330469|ref|YP_746691.1| Holliday junction resolvase-like protein [Nitrosomonas eutropha
C91]
gi|122314517|sp|Q0AIU5|RUVX_NITEC RecName: Full=Putative Holliday junction resolvase
gi|114307483|gb|ABI58726.1| Holliday junction resolvase YqgF [Nitrosomonas eutropha C91]
Length = 157
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
I D+ + + + + D G +RIG+AI + R AHP + + ++ I
Sbjct: 8 TISDMASVIL-SGTVLAFDFGVRRIGVAIGEYELRLAHPLMTIDQAMTKPRFEKIAELIE 66
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
T ++GL ++ +G+E + F + + + +P V DER TT A+ L +
Sbjct: 67 TWQPVLLVVGLSVHADGAEHEITRLCQRFARRL-EGRFGIPVVMEDERYTTAIARLTLEE 125
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDR 151
+ ++ +K+ +D IAA ILQ D
Sbjct: 126 VGITGRKQRPMLDQIAAQHILQTFFDS 152
>gi|19704033|ref|NP_603595.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296327898|ref|ZP_06870434.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|32130042|sp|Q8RFJ7|RUVX_FUSNN RecName: Full=Putative Holliday junction resolvase
gi|19714225|gb|AAL94894.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296155032|gb|EFG95813.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 138
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKKV ++ + + ++G+
Sbjct: 1 MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLVVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL ++N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD 150
VD +AA++ILQ LD
Sbjct: 120 VVDKVAASIILQTYLD 135
>gi|19552843|ref|NP_600845.1| Holliday junction resolvase-like protein [Corynebacterium
glutamicum ATCC 13032]
gi|62390514|ref|YP_225916.1| Holliday junction resolvase-like protein [Corynebacterium
glutamicum ATCC 13032]
gi|32130038|sp|Q8NQ23|RUVX_CORGL RecName: Full=Putative Holliday junction resolvase
gi|21324400|dbj|BAB99024.1| Predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Corynebacterium glutamicum ATCC 13032]
gi|41325851|emb|CAF21640.1| Predicted endonuclease involved in recombination [Corynebacterium
glutamicum ATCC 13032]
Length = 182
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69
P + +D+GT RIG+A SD + A P + R+ + L++ + N
Sbjct: 15 PGRR-LGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADIDRLVAIVEEYNAV 73
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I+GLP ++ G+ V + + + +P DERLTTV A Q L
Sbjct: 74 EVIVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRAS 133
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
VS K + +D AA ILQ LD R LE
Sbjct: 134 GVSEKAGRKVIDQAAAVEILQTWLDARTRALEPQ 167
>gi|145295753|ref|YP_001138574.1| Holliday junction resolvase-like protein [Corynebacterium
glutamicum R]
gi|140845673|dbj|BAF54672.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 182
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69
P + +D+GT RIG+A SD + A P + R+ + L++ + N
Sbjct: 15 PGRR-LGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADIDRLVAIVEEYNAV 73
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I+GLP ++ G+ V + + + +P DERLTTV A Q L
Sbjct: 74 EVIVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRAS 133
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
VS K + +D AA ILQ LD R LE
Sbjct: 134 GVSEKAGRKVIDQAAAVEILQTWLDARTRALEPQ 167
>gi|120436620|ref|YP_862306.1| Holliday junction resolvase-like protein [Gramella forsetii KT0803]
gi|167012728|sp|A0M3P4|RUVX_GRAFK RecName: Full=Putative Holliday junction resolvase
gi|117578770|emb|CAL67239.1| conserved hypothetical protein, UPF0081 [Gramella forsetii KT0803]
Length = 135
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D GTKR G+A++D + A + ++ + L + E + ++G
Sbjct: 1 MARILALDYGTKRTGVAVTDELKMIASGLTTVQTPELIKF---LEDYFKNEKVERVLVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P M+ + + F+ + + +P DER T+ A Q +ID + +KKR K
Sbjct: 58 PKRMDDTPSQSEVHIQEFLKEFVKKFPEMPMERVDERFTSKMAVQSMIDGGLKKKKRRDK 117
Query: 136 --VDSIAAALILQEVL 149
VD I+A +ILQ L
Sbjct: 118 ALVDEISATIILQTWL 133
>gi|327312426|ref|YP_004327863.1| RNAse H domain-containing protein, YqgF family [Prevotella
denticola F0289]
gi|326944800|gb|AEA20685.1| RNAse H domain protein, YqgF family [Prevotella denticola F0289]
Length = 139
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP R A+ + + L +I TE + +IG
Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRIIANGLATVATSGLFDF---LTQYIGTETVEQLVIGR 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P+ +G + FV+ +P ++DER T+V A Q +I V +K R
Sbjct: 58 PVQPDGRPSENLGRVEQFVNRWRKAHPELPVDYYDERFTSVIAHQAMIAGGVKKKTRREN 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134
>gi|229495944|ref|ZP_04389668.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
gi|229317036|gb|EEN82945.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
Length = 148
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP R + ++ L +I E + ++G
Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRITPGGLATVA---SSELLQYLSEYIPREGVDLVVVGY 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN E + FV + R + V++DER T+ AQ+ +++ + ++KR K
Sbjct: 58 PRQMNNEESESMRYIGPFVAKLEKRFPQLRIVYYDERFTSCLAQKTILESGIGKQKRRNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD ++A +ILQ ++ +++
Sbjct: 118 ALVDEVSAIIILQSYMESLAY 138
>gi|34541766|ref|NP_906245.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis
W83]
gi|62901001|sp|Q7MT06|RUVX_PORGI RecName: Full=Putative Holliday junction resolvase
gi|34398084|gb|AAQ67144.1| conserved hypothetical protein TIGR00250 [Porphyromonas gingivalis
W83]
Length = 138
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP + + + L +++ E + F++GL
Sbjct: 1 MGRILAIDYGRKRTGLAVTDPLKIIPGGLTTVPTHTLLDF---LRDYVSREPVERFVLGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN E + R F + +P + DER T+ AQ+ +++ + + KR K
Sbjct: 58 PRRMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMKRRDK 117
Query: 136 --VDSIAAALILQEVLDR 151
VD ++A +ILQ LD
Sbjct: 118 ALVDEVSAVIILQSYLDN 135
>gi|71083767|ref|YP_266487.1| putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1062]
gi|91763197|ref|ZP_01265161.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1002]
gi|146325587|sp|Q4FLQ5|RUVX_PELUB RecName: Full=Putative Holliday junction resolvase
gi|71062880|gb|AAZ21883.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1062]
gi|91717610|gb|EAS84261.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1002]
Length = 151
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 1/151 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
++ IED +DLG+KRIG++I D + A P + + + EL
Sbjct: 1 MITIEDFKIKHTNKVRFIGLDLGSKRIGVSICDERQSIATPFKTINKTNTNELIDELKII 60
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I NI I+G P+NM+GS G S N I + + +P + WDERL+TV A +
Sbjct: 61 IKDNNIGGIIVGNPVNMDGSLGRSAQSVNDVASN-ISKSIDLPVILWDERLSTVGAFNLS 119
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
++V+ KR++ +D AAA ILQ +D ++
Sbjct: 120 SLLDVNVSKRVKTIDQNAAAFILQGAIDFLN 150
>gi|300741579|ref|ZP_07071600.1| putative Holliday junction resolvase [Rothia dentocariosa M567]
gi|300380764|gb|EFJ77326.1| putative Holliday junction resolvase [Rothia dentocariosa M567]
Length = 184
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 6/147 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLN 78
+D+G R+G ++SDP A P L R + L + ++ +GLP
Sbjct: 10 MGVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGLPKT 69
Query: 79 MNGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
M G E R + H + + ++ DERLTTVSA + L + VS +
Sbjct: 70 MRGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSRNFK 129
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
VD +AA ILQ LD + ++ G
Sbjct: 130 TMVDQVAAVNILQYSLDALKAGQAVAG 156
>gi|323493583|ref|ZP_08098704.1| Holliday junction resolvase-like protein [Vibrio brasiliensis LMG
20546]
gi|323312106|gb|EGA65249.1| Holliday junction resolvase-like protein [Vibrio brasiliensis LMG
20546]
Length = 140
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P ++ G + + F + + R + DERL+T+ A+ L +M +
Sbjct: 62 PTDLYGKDLETITPRAKKFANRLHGR-FGLAVELHDERLSTMEARADLFEMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 121 NVDCQSAVVILESWFE 136
>gi|161831062|ref|YP_001597829.1| Holliday junction resolvase-like protein [Coxiella burnetii RSA
331]
gi|215919336|ref|NP_821064.2| hypothetical protein CBU_2094 [Coxiella burnetii RSA 493]
gi|218511772|sp|Q83A17|RUVX_COXBU RecName: Full=Putative Holliday junction resolvase
gi|226725541|sp|A9NBU2|RUVX_COXBR RecName: Full=Putative Holliday junction resolvase
gi|161762929|gb|ABX78571.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA
331]
gi|206584221|gb|AAO91578.2| hypothetical cytosolic protein [Coxiella burnetii RSA 493]
Length = 141
Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 15 PNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
PNQ + D G KRIG+A+ A+ L + ++ I T + +
Sbjct: 2 PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVLV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P NM+GSE + R F + + +P DERLTT+ A++ + ++ KR
Sbjct: 62 VGIPYNMDGSEQTLTFAARKFARKL-QMRFGLPVSMVDERLTTIEAKRQWYEQGLT--KR 118
Query: 133 IQKVDSIAAALILQEVL 149
Q +D+ AA LIL++ L
Sbjct: 119 PQHLDNYAAKLILEQWL 135
>gi|311113672|ref|YP_003984894.1| Holliday junction resolvase YqgF [Rothia dentocariosa ATCC 17931]
gi|310945166|gb|ADP41460.1| Holliday junction resolvase YqgF [Rothia dentocariosa ATCC 17931]
Length = 175
Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 6/147 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLN 78
+D+G R+G ++SDP A P L R + L + ++ +GLP
Sbjct: 1 MGVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGLPKT 60
Query: 79 MNGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
M G E R + H + + ++ DERLTTVSA + L + VS +
Sbjct: 61 MRGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSRNFK 120
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
VD +AA ILQ LD + ++ G
Sbjct: 121 TMVDQVAAVNILQYSLDALKAGQAVAG 147
>gi|25028303|ref|NP_738357.1| Holliday junction resolvase-like protein [Corynebacterium efficiens
YS-314]
gi|23493587|dbj|BAC18557.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 204
Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69
P + I +D+GT RIG+A SD R A P + R+ + L+ IT +
Sbjct: 38 PGRRI-GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAV 96
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDM 125
++GLP ++ G+ V R + R +P DERLTTV A Q L
Sbjct: 97 EVVVGLPRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRAS 156
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
++ + + +D AA ILQ LD
Sbjct: 157 GINERDGRKVIDQAAAVEILQTWLD 181
>gi|284052056|ref|ZP_06382266.1| Holliday junction resolvase-like protein [Arthrospira platensis
str. Paraca]
gi|291569994|dbj|BAI92266.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 148
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 3/144 (2%)
Query: 13 LKPNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ P I +D+G +RIG+A D A +VR + + I +
Sbjct: 4 ITPKGYISALGLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLAQFQAIIQQRQVQI 63
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLP NG G + + + + + + +P ++DERLT++ A+++L +
Sbjct: 64 LVVGLPYLSNGELGTQARQIQKYTRRL-QKSLALPVEYFDERLTSIEAEEMLKGQKIPLS 122
Query: 131 KRIQKVDSIAAALILQEVLDRISF 154
+ +D AAALILQ+ LD+
Sbjct: 123 ENKALIDRKAAALILQQWLDQRRH 146
>gi|302866802|ref|YP_003835439.1| Holliday junction resolvase YqgF [Micromonospora aurantiaca ATCC
27029]
gi|302569661|gb|ADL45863.1| Holliday junction resolvase YqgF [Micromonospora aurantiaca ATCC
27029]
Length = 153
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFII 73
+D+G R+G+A DP A P L R V EL+ ++
Sbjct: 10 LGVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLAAEHEAVGIVV 69
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+N+ G GP + A+ + D +P DER++TV A + L + V K++
Sbjct: 70 GLPVNLAGKHGPAALNVSAYASRLADVMRPIPVTLTDERMSTVVASRRLAERGVRGKRQR 129
Query: 134 QKVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 130 AVVDQAAAVEILQSWLD 146
>gi|315503217|ref|YP_004082104.1| holliday junction resolvase yqgf [Micromonospora sp. L5]
gi|315409836|gb|ADU07953.1| Holliday junction resolvase YqgF [Micromonospora sp. L5]
Length = 153
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFII 73
+D+G R+G+A DP A P L R V EL+ ++
Sbjct: 10 LGVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLAAEHEAVGIVV 69
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+N+ G GP + A+ + D +P DER++TV A + L + V K++
Sbjct: 70 GLPVNLAGKHGPAALNVSAYASRLADVMRPIPVTLTDERMSTVVASRRLAERGVRGKRQR 129
Query: 134 QKVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 130 AVVDQAAAVEILQSWLD 146
>gi|84394068|ref|ZP_00992804.1| Holliday junction resolvase-like protein [Vibrio splendidus 12B01]
gi|84375310|gb|EAP92221.1| Holliday junction resolvase-like protein [Vibrio splendidus 12B01]
Length = 140
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P K ++ I ++GL
Sbjct: 2 SRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGL 61
Query: 76 PLNMNGSE-GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + R V DERL+T A+ L +M +
Sbjct: 62 PTDLHGKDLAAITPRAKKFANRLKGR-FGVDVELHDERLSTTEARADLFEMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 121 NVDNQSAVVILESWFE 136
>gi|325963400|ref|YP_004241306.1| hypothetical protein Asphe3_20170 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469487|gb|ADX73172.1| conserved hypothetical protein TIGR00250 [Arthrobacter
phenanthrenivorans Sphe3]
Length = 199
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
+D+GT R+G+AI D A P L R + + +++ + I+GLP
Sbjct: 16 LGVDVGTVRVGVAICDRDSVLATPYKTLDRNARKNSDIRIIANLVDELGAVQVIVGLPRT 75
Query: 79 MNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
M G E R + + R + VP DERL++V+A + L + +S + +
Sbjct: 76 MKGEERSSAEMAREYAALLAGELAGRGLAVPVNLVDERLSSVTAHRHLHEAGMSSRNHRK 135
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
VD +AAA ILQ +D + G
Sbjct: 136 VVDQVAAAGILQHAIDMQKARGADVG 161
>gi|86146410|ref|ZP_01064734.1| Holliday junction resolvase-like protein [Vibrio sp. MED222]
gi|218710626|ref|YP_002418247.1| Holliday junction resolvase-like protein [Vibrio splendidus LGP32]
gi|85835889|gb|EAQ54023.1| Holliday junction resolvase-like protein [Vibrio sp. MED222]
gi|218323645|emb|CAV19936.1| putative Holliday junction resolvase [Vibrio splendidus LGP32]
Length = 140
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P K ++ I ++GL
Sbjct: 2 SRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGL 61
Query: 76 PLNMNGSE-GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + R V DERL+T A+ L +M +
Sbjct: 62 PTDLHGKDLAAITPRAKKFANRLKGR-FGVDVELHDERLSTTEARADLFEMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 121 NVDNQSAVVILESWFE 136
>gi|189501335|ref|YP_001960805.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1]
gi|226725499|sp|B3EPT4|RUVX_CHLPB RecName: Full=Putative Holliday junction resolvase
gi|189496776|gb|ACE05324.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1]
Length = 144
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + I +ID G KR GLA +DP FA P +K+ + SF+ ++ I+G
Sbjct: 5 PIKRILAIDYGKKRTGLAKTDPFCSFAQPVGTFPPEKI---ITIIKSFLQENSVEKIIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK--R 132
PLN +G++ P F+ + +P DE ++ A ++LI+ +SRKK R
Sbjct: 62 YPLNSDGTKNPMTGIIDGFIEELSAAFPDIPVEPIDEHGSSKQAGKVLIESGLSRKKRQR 121
Query: 133 IQKVDSIAAALILQEVLDR 151
++DS AA L+LQ L+
Sbjct: 122 KGRLDSAAACLLLQHYLEN 140
>gi|260775563|ref|ZP_05884460.1| putative Holliday junction resolvase [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608744|gb|EEX34909.1| putative Holliday junction resolvase [Vibrio coralliilyticus ATCC
BAA-450]
Length = 135
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 2/132 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG AI A P ++ I ++GLP ++
Sbjct: 1 MAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPNLLVVGLPTDL 60
Query: 80 NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G + + F + + R +P DERL+T A+ L M + VD
Sbjct: 61 HGKDLETITPRAKKFANRLHGR-FGLPVELHDERLSTTEARSELFSMGGYKALSKGNVDC 119
Query: 139 IAAALILQEVLD 150
+A +IL+ +
Sbjct: 120 QSAVVILESWFE 131
>gi|149376907|ref|ZP_01894662.1| Exodeoxyribonuclease III xth [Marinobacter algicola DG893]
gi|149358799|gb|EDM47268.1| Exodeoxyribonuclease III xth [Marinobacter algicola DG893]
Length = 137
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 1/130 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GT+RIG+A P L + ++ + ++GLPLNM
Sbjct: 1 MAFDFGTRRIGVASGQEMLGTGKPLTMLPARDGVPDWDQIGRLLKEWQPDRVLVGLPLNM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ +E R F + R +V DERLT+ A+ ++ SR VD
Sbjct: 61 DDTENDMCARARKFGKRLHGR-FHVEVEMVDERLTSFEAKGDVMASGGSRDFGRDGVDDR 119
Query: 140 AAALILQEVL 149
AA LIL+
Sbjct: 120 AAVLILETWF 129
>gi|213963251|ref|ZP_03391508.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
gi|213954113|gb|EEB65438.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
Length = 136
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +ID GTKR G+A++DP + A + + L + T E + F+IG P
Sbjct: 2 RILAIDYGTKRTGIAVTDPLQIIASGLCTVETPTLLAF---LKQYTTEEAVEGFVIGQPK 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
+N + + F+ + +P DER T+ A Q +ID + +K+R K
Sbjct: 59 RLNNEDSSVETHIQQFITQLQKEFPSIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKAL 118
Query: 136 VDSIAAALILQEVL 149
+D I+A +ILQE L
Sbjct: 119 IDEISATIILQEFL 132
>gi|296129665|ref|YP_003636915.1| Holliday junction resolvase YqgF [Cellulomonas flavigena DSM 20109]
gi|296021480|gb|ADG74716.1| Holliday junction resolvase YqgF [Cellulomonas flavigena DSM 20109]
Length = 190
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 5/146 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIAAFIIG 74
++D+GT R+G+A SDP A P L R + +G
Sbjct: 19 LAVDVGTVRVGVASSDPDGLLATPVETLARAASKPSSTAADVARIADEARERRAEVVYVG 78
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +++G+EG RA+ + V DER++TVSA L S ++ +
Sbjct: 79 LPRHLSGAEGSSAGVARAYAVALAHAVRPVQVRLVDERMSTVSAHHALQAAGRSGRRHRE 138
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
VD AA +ILQ LD G
Sbjct: 139 VVDQAAAVVILQHALDMERTTGRRPG 164
>gi|90415257|ref|ZP_01223191.1| putative holliday junction resolvase [marine gamma proteobacterium
HTCC2207]
gi|90332580|gb|EAS47750.1| putative holliday junction resolvase [marine gamma proteobacterium
HTCC2207]
Length = 145
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ + D G K+IG+A A L ++ +T ++G
Sbjct: 6 KHKRLLGFDFGLKQIGVASGQTLTLSATGLTILKAVDGIPNWEQVEKLLTEWKPDLVVVG 65
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+ SE + R F + R V DERLT+ A+ + D + +
Sbjct: 66 LPLNMDDSESDLSNRARKFARRLQGR-FAVDVEMVDERLTSREAKSLGRDQGT---QDLT 121
Query: 135 KVDSIAAALILQEVLD 150
K+D IAA+LILQ LD
Sbjct: 122 KIDHIAASLILQSWLD 137
>gi|225010668|ref|ZP_03701138.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-3C]
gi|225005221|gb|EEG43173.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-3C]
Length = 137
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ++D GTKR G+A++DP + A ++ + L S++ +E ++ ++G
Sbjct: 1 MKRIIALDFGTKRTGVAVTDPMQIIASGLDTVLTPDLISF---LKSYMVSEPVSTIVLGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P M+ + + AF+ + + DER T+ A Q +I + +KKR
Sbjct: 58 PKQMDNTPSESEAAIGAFILTLEAEFPDIEIARQDERFTSKMAVQAMIVGGMKKKKRQEK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
+VD I+A LILQ L+RIS
Sbjct: 118 GRVDQISATLILQAYLNRIS 137
>gi|305681376|ref|ZP_07404183.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii
ATCC 14266]
gi|305659581|gb|EFM49081.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii
ATCC 14266]
Length = 174
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENIA 69
P + +D+GT RIG+A+S A P + R+ + L++ IT N+
Sbjct: 16 PGRR-LGVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSDIDRLITLITDNNVV 74
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I+GLP ++ G+ V + + ++ +P DERL+TV A Q L
Sbjct: 75 EVIVGLPRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADERLSTVVAHQALRAS 134
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
VS K + +D AA ILQ LD R ++L +
Sbjct: 135 GVSEKSGRKIIDQAAAVEILQSWLDGRTNYLHRT 168
>gi|114799411|ref|YP_760995.1| hypothetical protein HNE_2300 [Hyphomonas neptunium ATCC 15444]
gi|123128643|sp|Q0BZU8|RUVX_HYPNA RecName: Full=Putative Holliday junction resolvase
gi|114739585|gb|ABI77710.1| conserved hypothetical protein TIGR00250 [Hyphomonas neptunium ATCC
15444]
Length = 151
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 5/152 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ + D L + ID GT IG+A +D R A P +++KK+ + LL
Sbjct: 1 MAVVDLFD----LPREGVLLGIDPGTATIGVAATDRIRMMASPVETILKKKLAPSLERLL 56
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I+GLPLN++GS GPR S R V +++ + +P F DER ++ A
Sbjct: 57 HIYDERAAVGLIVGLPLNVDGSMGPRAQSVRTLVSSLLKVR-DLPVTFQDERYSSAEAGD 115
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
I+ +R+ R ++D+ AAA+ILQ+ L R+
Sbjct: 116 IMRAAGATRRNREARIDASAAAVILQDALSRL 147
>gi|254303693|ref|ZP_04971051.1| possible Holliday junction resolvase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323885|gb|EDK89135.1| possible Holliday junction resolvase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 138
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKK+ ++ + + ++G+
Sbjct: 1 MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKI-KSVKRIAEICKENDTNLIVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL ++N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKREIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD 150
VD +AA++ILQ LD
Sbjct: 120 VVDKVAASIILQTYLD 135
>gi|254447654|ref|ZP_05061120.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
HTCC5015]
gi|198262997|gb|EDY87276.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
HTCC5015]
Length = 141
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ID G KRIG+A A P L L + A ++GLPL
Sbjct: 3 TLLGIDFGLKRIGIATGQTLTCSATPLTTLPNHAEHTNWDGLDKVLKDWKPDAIVLGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL----IDMNVSRKKRI 133
N +GS+ R F + + + P + DER ++ A+Q L ++ RK +
Sbjct: 63 NKDGSDHALTKQVRQF-RDTLGQHFSGPIHWQDERASSREAEQSLTSQRASGDLRRKVKK 121
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AAALILQ L++
Sbjct: 122 EDIDQLAAALILQRWLNK 139
>gi|295396123|ref|ZP_06806306.1| possible crossover junction endodeoxyribonuclease [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971064|gb|EFG46956.1| possible crossover junction endodeoxyribonuclease [Brevibacterium
mcbrellneri ATCC 49030]
Length = 147
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73
ID+G R+G+A SDP A P + R+ AL + I E + +I
Sbjct: 2 RRGRRLGIDVGAVRVGIAHSDPDGILASPLEVVNRRGGDNIALRRIQEIVEEVDPVELVI 61
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P +++G R F ++DR +P + DER TT A +L + + K+R
Sbjct: 62 GDPTSLDGKARQSADKARRFAQKIVDR-TGLPVRYVDERFTTTQAHLMLQEAGKTSKQRR 120
Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
+ VD+ AA +ILQ LD ++ ++S
Sbjct: 121 ETVDAQAAVVILQTALDALAREDNS 145
>gi|54025613|ref|YP_119855.1| Holliday junction resolvase-like protein [Nocardia farcinica IFM
10152]
gi|62900947|sp|Q5YTK0|RUVX_NOCFA RecName: Full=Putative Holliday junction resolvase
gi|54017121|dbj|BAD58491.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 180
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 65/153 (42%), Gaps = 6/153 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTEN 67
ID+G+ RIG+A SDP A P + R K V+ + +
Sbjct: 16 PGRGRRLGIDVGSVRIGVASSDPDGILATPVETVPRAKKVPRGTVSPDIARIAEIVREYE 75
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I+GLP + G +G + AF + V DERLTTVSA + L D V
Sbjct: 76 AVEVIVGLPRTLRGEKGSAATAAIAFAERLRREIPDVAIRLSDERLTTVSAARALRDSGV 135
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ + Q +D AA ILQ LD S + S G
Sbjct: 136 RARGQRQVIDQAAAVSILQGWLDERSAVMRSVG 168
>gi|283781683|ref|YP_003372438.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068]
gi|283440136|gb|ADB18578.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068]
Length = 153
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D GT RIGLAI+DP ++FA P R+ A E AA+++GL
Sbjct: 7 RGRLIGVDYGTVRIGLAITDPEQKFASPLDNYTRRGGQADARYFQRVAQEERAAAWVVGL 66
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P++ GSE + R F + + +P +DER T+ A+++LI +SRK+R
Sbjct: 67 PVHTTGSESQKSTEARQFAKQL-EELTKLPVFLFDERFTSADAEEMLIAAGMSRKERKSH 125
Query: 136 VDSIAAALILQEVL 149
+D +AA ++L L
Sbjct: 126 LDKLAAQILLSAFL 139
>gi|308235923|ref|ZP_07666660.1| putative Holliday junction resolvase [Gardnerella vaginalis ATCC
14018]
Length = 156
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 13/144 (9%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78
IDLG R+G A+SDP FAHP + ++L+ I +++ +IGLPL
Sbjct: 4 LGIDLGDARVGTALSDPELTFAHPAGNVQSYGDSFNAIEDVLNIIEDNSVSRVVIGLPLQ 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126
++G+EG R + N++ R + V+ DERLTTV+A + L+D +
Sbjct: 64 LDGTEGKSAKKARRWGTNLVKRMKSLFDYGDWSLDFIPEVVWKDERLTTVTAHKQLLDAD 123
Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
S +K VD +A LILQ +D
Sbjct: 124 FSTRKHRPMVDQQSAVLILQSAID 147
>gi|227496181|ref|ZP_03926487.1| possible Holliday junction resolvase [Actinomyces urogenitalis DSM
15434]
gi|226834264|gb|EEH66647.1| possible Holliday junction resolvase [Actinomyces urogenitalis DSM
15434]
Length = 160
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 55/131 (41%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D+G R+G+A D A P L R + E + ++GLP+ +
Sbjct: 9 LAFDVGKARVGVARCDADAILAVPECTLTRDRYGADLEEAADLVEDYEAIEVVVGLPIQL 68
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G R + + R VP DERL+TVSA Q L K VD
Sbjct: 69 SGGSTASTRDARGWARQLAARVGPVPVRLVDERLSTVSAHQALHGSGRHAKDFRPVVDQA 128
Query: 140 AAALILQEVLD 150
AA +IL++ L+
Sbjct: 129 AAVVILEQALE 139
>gi|117928536|ref|YP_873087.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B]
gi|117648999|gb|ABK53101.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B]
Length = 173
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 2/150 (1%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAA 70
+++P I +D+GT RIG+A+SDP R A P L R L +
Sbjct: 5 AVRPGVRI-GVDVGTVRIGVAVSDPDGRLAVPAETLPRDASGAGELRRLAQLVEERGAVE 63
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLP+++ G+ G + + VP DER TTV A + L ++ +
Sbjct: 64 VVVGLPVSLRGTAGAAARDIAGYARRLATAVHPVPVRLVDERFTTVHADRRLQSAGLAGR 123
Query: 131 KRIQKVDSIAAALILQEVLDRISFLESSKG 160
+R VD +AAA++LQ+ LD G
Sbjct: 124 QRRAVVDQLAAAILLQDALDAERATGRPPG 153
>gi|289425322|ref|ZP_06427099.1| RNAse YqgF [Propionibacterium acnes SK187]
gi|289428538|ref|ZP_06430222.1| RNAse YqgF [Propionibacterium acnes J165]
gi|295130737|ref|YP_003581400.1| RNAse YqgF [Propionibacterium acnes SK137]
gi|289154300|gb|EFD02988.1| RNAse YqgF [Propionibacterium acnes SK187]
gi|289158232|gb|EFD06451.1| RNAse YqgF [Propionibacterium acnes J165]
gi|291376276|gb|ADE00131.1| RNAse YqgF [Propionibacterium acnes SK137]
gi|332675582|gb|AEE72398.1| putative Holliday junction resolvase [Propionibacterium acnes 266]
Length = 160
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVHT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 74 NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133
Query: 140 AAALILQEVLDRISFLES 157
AA IL+ VL+++ +S
Sbjct: 134 AAVAILEHVLEQVRLGQS 151
>gi|126662043|ref|ZP_01733042.1| Holliday junction resolvase-like protein [Flavobacteria bacterium
BAL38]
gi|126625422|gb|EAZ96111.1| Holliday junction resolvase-like protein [Flavobacteria bacterium
BAL38]
Length = 137
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +ID G KR G+A++D + A + + L + + E + + IIG P
Sbjct: 3 RILAIDYGIKRTGIAVTDEMQMIAFGLTTIPSET---AITFLKDYFSKEKVESVIIGEPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
MNG AFV + +P DER T+ A Q +ID +++K+R K
Sbjct: 60 QMNGEPSQSTDIINAFVVKFQEAFPEMPLNRVDERFTSKMAFQTMIDSGLNKKQRQNKAL 119
Query: 136 VDSIAAALILQEVL 149
VD IAA +ILQ+ L
Sbjct: 120 VDEIAATIILQDYL 133
>gi|300934542|ref|ZP_07149798.1| Holliday junction resolvase-like protein [Corynebacterium resistens
DSM 45100]
Length = 192
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+S ID+GT RIGLA+SDP A P + + ++ + +
Sbjct: 34 AQSDPGRGRRLGIDVGTVRIGLALSDPDGILASPLRTVHARDDGGDVRQVACEVEENFVV 93
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-----VPFVFWDERLTTVSAQQILID 124
IIGLP+ + G+ +AF + D +P DER++TV+A +
Sbjct: 94 EVIIGLPVALRGNSTASTEKAKAFASELHDELAQRGHQSIPIRMVDERMSTVAATAAMHA 153
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD 150
V+ KK +++D AA ILQ LD
Sbjct: 154 SGVNVKKGRKRIDQAAAVHILQGWLD 179
>gi|289523055|ref|ZP_06439909.1| putative Holliday junction resolvase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503598|gb|EFD24762.1| putative Holliday junction resolvase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 144
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G+ RIG+AISDP FA FL + L LL I N+ +IGLP+
Sbjct: 4 ILALDIGSVRIGIAISDPLGIFAQGVGFLNAQGSWLEDLTLL--IRKHNVKKVVIGLPIR 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
NG + + + ++ + F+ WDER TT AQ L D +S KK+ +VD
Sbjct: 62 TNGKKDREADAISDLTDKLKEKFPDITFILWDERFTTTLAQNYLRDSGMSGKKKRNRVDM 121
Query: 139 IAAALILQEVLDRIS 153
IAA ++LQ LD +
Sbjct: 122 IAATVLLQSYLDYSN 136
>gi|193213626|ref|YP_001999579.1| Holliday junction resolvase YqgF [Chlorobaculum parvum NCIB 8327]
gi|193087103|gb|ACF12379.1| Holliday junction resolvase YqgF [Chlorobaculum parvum NCIB 8327]
Length = 141
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I ID GTKRIG+A SDP FA P + + L E I ++G
Sbjct: 5 HKRIIGIDFGTKRIGVAKSDPLGMFAQPVGTFDMEGL---LGALSKIRNEEGIERIVVGY 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
PL+ G E F + VP DE ++ SA ++L SRKKR
Sbjct: 62 PLSDKGEENRMTSVVDRFAEELRVALPEVPVETIDEYRSSRSAMKLLAGSGASRKKRNEK 121
Query: 134 QKVDSIAAALILQEVLDRIS 153
++D+ AA LILQ LD +
Sbjct: 122 GRLDTAAACLILQSWLDSRA 141
>gi|294786853|ref|ZP_06752107.1| putative Holliday junction resolvase [Parascardovia denticolens
F0305]
gi|315226489|ref|ZP_07868277.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Parascardovia denticolens DSM 10105]
gi|294485686|gb|EFG33320.1| putative Holliday junction resolvase [Parascardovia denticolens
F0305]
gi|315120621|gb|EFT83753.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Parascardovia denticolens DSM 10105]
Length = 176
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 14 KPNQPI-ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAF 71
+P++ + +DLG R+G+AISDP FAHP + Q E+ I ++
Sbjct: 27 RPSRSVWLGLDLGNARVGVAISDPELTFAHPEGNIRVAGDYFQAIDEITDLIDDHQVSHV 86
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-----YVPFVFWDERLTTVSAQQILIDMN 126
+IG PL ++G+EG R F + R V DER+TTV A L+D
Sbjct: 87 VIGYPLQLDGTEGKSAKKARRFSLALEKRLALYQIQGVSLELKDERMTTVRAHSQLMDAG 146
Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
+ ++ VD +A LILQ LD
Sbjct: 147 IGSRRHRPLVDQQSAVLILQAALD 170
>gi|225021331|ref|ZP_03710523.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii
ATCC 33806]
gi|224945713|gb|EEG26922.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii
ATCC 33806]
Length = 174
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENIA 69
P + +D+GT RIG+A+S A P + R+ + L++ IT ++
Sbjct: 16 PGRR-LGVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSDIDRLITLITDNDVV 74
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
I+GLP ++ G+ V + + ++ +P DERL+TV A Q L
Sbjct: 75 EVIVGLPRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADERLSTVVAHQALRAS 134
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
VS K + +D AA ILQ LD R ++L +
Sbjct: 135 GVSEKSGRKIIDQAAAVEILQSWLDGRTNYLHRT 168
>gi|269965748|ref|ZP_06179845.1| Holliday junction resolvase-like protein [Vibrio alginolyticus 40B]
gi|269829616|gb|EEZ83853.1| Holliday junction resolvase-like protein [Vibrio alginolyticus 40B]
Length = 136
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG AI A P ++ I ++GLP ++
Sbjct: 1 MAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGLPTDL 60
Query: 80 NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G + R F + R +P DERL+T A+ L M + VD
Sbjct: 61 HGKDLETITPRARKFAKRLQGR-YGLPVELHDERLSTAEARAELFSMGGYKALSKGNVDC 119
Query: 139 IAAALILQEVLDRI 152
+A +IL+ + +
Sbjct: 120 QSAVVILESWFEAL 133
>gi|261250167|ref|ZP_05942743.1| putative Holliday junction resolvase [Vibrio orientalis CIP 102891]
gi|260939283|gb|EEX95269.1| putative Holliday junction resolvase [Vibrio orientalis CIP 102891]
Length = 141
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLVVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + R V DERL+T A+ L M +
Sbjct: 62 PTDLHGRDLETITPRAKKFANRLHGR-FGVAVELHDERLSTTEARADLFAMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 121 NVDCQSAVVILESWFE 136
>gi|119962349|ref|YP_948020.1| hypothetical protein AAur_2280 [Arthrobacter aurescens TC1]
gi|119949208|gb|ABM08119.1| putative Uncharacterised protein family (UPF0081) [Arthrobacter
aurescens TC1]
Length = 196
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFII 73
P+ +D+GT R+GLA+ DP A P + R K L+ +
Sbjct: 11 PHGIKLGVDVGTVRVGLAVCDPDGILATPLKTIGRDSKKNSDVRVLVKHAADLPAVQIFV 70
Query: 74 GLPLNMNGSEGPRVHSTRAFVH----NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
GLP M G E + ++ + VP DERL+TV+A + L +S
Sbjct: 71 GLPRTMKGEERASAQMAMDYADLLVSELLRVGLDVPVNLVDERLSTVTAHRNLHQAGMSS 130
Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160
K + VD +AAA ILQ +D ++ ++G
Sbjct: 131 KNHRKVVDQVAAAGILQHAID----MQKARG 157
>gi|256820223|ref|YP_003141502.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271]
gi|256581806|gb|ACU92941.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271]
Length = 143
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +ID GTKR G+A++DP + A + + L + E + AF+IG P
Sbjct: 2 RLLAIDYGTKRTGIAVTDPLQIIASGLCTVETSTLLAF---LKQYTAEEAVEAFVIGQPK 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
MN + + F+ + +P DER T+ A Q +ID + +K+R K
Sbjct: 59 RMNSEDSSVEAEIQKFISKLQQEFPEIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKAL 118
Query: 136 VDSIAAALILQEVL 149
+D I+A +ILQE L
Sbjct: 119 IDEISATIILQEFL 132
>gi|294673343|ref|YP_003573959.1| hypothetical protein PRU_0590 [Prevotella ruminicola 23]
gi|294472451|gb|ADE81840.1| conserved hypothetical protein TIGR00250 [Prevotella ruminicola 23]
Length = 137
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I SID G KR GLA++DP + A + ++ L ++I E + +IG
Sbjct: 1 MARILSIDYGKKRTGLAVTDPLQIIAGGLATVATSELFDF---LKAYIAREQVEMIVIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P NG + + FV+ VP ++DER T+V A Q ++D + +K R
Sbjct: 58 PRQPNGEPSENLARVQQFVNRWRKAVPEVPIQYYDERFTSVLAHQAMLDGGLKKKARQNK 117
Query: 134 QKVDSIAAALILQEVL 149
VD I+A +IL++ +
Sbjct: 118 GLVDEISATIILEDFM 133
>gi|167752474|ref|ZP_02424601.1| hypothetical protein ALIPUT_00725 [Alistipes putredinis DSM 17216]
gi|167659543|gb|EDS03673.1| hypothetical protein ALIPUT_00725 [Alistipes putredinis DSM 17216]
Length = 137
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR G+A+SDP R A + K + + L + +++ +IG
Sbjct: 1 MGRILAIDYGTKRTGIAVSDPLRIIAGGLETVETKGLERW---LAQYFAANDVSTIVIGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ M+G+ + VF+DER T+V A + +++ + + R K
Sbjct: 58 PMQMSGAPSETWRYVEPLAARLRRAYPDKEVVFYDERFTSVIAHRTMLESGMGKMARRDK 117
Query: 136 --VDSIAAALILQEVLDRIS 153
VD I+A +ILQ ++ S
Sbjct: 118 ALVDKISATIILQGYMESRS 137
>gi|15827175|ref|NP_301438.1| Holliday junction resolvase-like protein [Mycobacterium leprae TN]
gi|221229653|ref|YP_002503069.1| Holliday junction resolvase-like protein [Mycobacterium leprae
Br4923]
gi|32130062|sp|Q9CCS9|RUVX_MYCLE RecName: Full=Putative Holliday junction resolvase
gi|254767521|sp|B8ZUJ7|RUVX_MYCLB RecName: Full=Putative Holliday junction resolvase
gi|13092723|emb|CAC30021.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932760|emb|CAR70606.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length = 184
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Query: 8 DLVKSLKPNQ-PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
DL K+L P + ID+G+ RIG+A SDP A P + R + + L +
Sbjct: 16 DLSKNLDPERGRRLGIDVGSVRIGVAFSDPDGILATPVETVRRYRSAKHLRRLAELVVEL 75
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
+ ++GLP + G + R VP DERLTTVSAQ++L
Sbjct: 76 QVVEVVVGLPWTLTDRTGSSAKDAIDTAEALARRVAPVPVRLVDERLTTVSAQRLLRAAG 135
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISF 154
V K + +D AA +ILQ LD+
Sbjct: 136 VRAKDQRAVIDQAAAVVILQNWLDQCRA 163
>gi|148980485|ref|ZP_01816082.1| Holliday junction resolvase-like protein [Vibrionales bacterium
SWAT-3]
gi|145961210|gb|EDK26524.1| Holliday junction resolvase-like protein [Vibrionales bacterium
SWAT-3]
Length = 140
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P K ++ I ++GL
Sbjct: 2 SRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + F + + R V DERL+T A+ L DM +
Sbjct: 62 PTDLHGRALETITPRAKKFANRLKGR-FGVDVELHDERLSTAEARADLFDMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 121 NVDNQSAVVILESWFE 136
>gi|314923562|gb|EFS87393.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL001PA1]
Length = 160
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVYT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E + R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 74 NGTEQLAAQNVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133
Query: 140 AAALILQEVLDRISFLES 157
AA IL+ VL+++ +S
Sbjct: 134 AAVAILEHVLEQVRLGQS 151
>gi|282881720|ref|ZP_06290383.1| putative RNAse [Prevotella timonensis CRIS 5C-B1]
gi|281304479|gb|EFA96576.1| putative RNAse [Prevotella timonensis CRIS 5C-B1]
Length = 137
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I SID G KR G+A++D + A+ + + L +++ E + +IG P+
Sbjct: 2 RILSIDYGKKRTGIAVTDSLQIIANGLATVATSALFDF---LKTYVAQEEVERIVIGKPM 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
NG + FV+ +P F+DER T+V A Q ++ + +K R K
Sbjct: 59 QTNGKPSENFARVQQFVNRWRKAMPQIPIEFYDERFTSVLAHQAILQSGIGKKARQNKAL 118
Query: 136 VDSIAAALILQEVLDRIS 153
VD ++A +ILQ ++
Sbjct: 119 VDEVSATIILQSYMESRR 136
>gi|315924762|ref|ZP_07920979.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Pseudoramibacter alactolyticus ATCC 23263]
gi|315621661|gb|EFV01625.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Pseudoramibacter alactolyticus ATCC 23263]
Length = 143
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I +D+G K +G+A+SD A + +T NI + GLP
Sbjct: 3 EKILGLDIGDKYVGIAVSDALGVTAQGYRTYKKADRNADLAFFGDVVTQFNIKTAVAGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+M+G E +V T+ + + + R + + ++ DERLTT +++ +LI V R+ R Q +
Sbjct: 63 KDMDGRETAQVRKTKNYCNFLAKR-LGLEVIYIDERLTTRASEAVLIAGGVRRENRKQHI 121
Query: 137 DSIAAALILQEVLDRIS 153
D+++A LILQ LDR +
Sbjct: 122 DTLSAQLILQMYLDREN 138
>gi|259507361|ref|ZP_05750261.1| Holliday junction resolvase [Corynebacterium efficiens YS-314]
gi|259165072|gb|EEW49626.1| Holliday junction resolvase [Corynebacterium efficiens YS-314]
Length = 188
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69
P + I +D+GT RIG+A SD R A P + R+ + L+ IT +
Sbjct: 22 PGRRI-GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAV 80
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDM 125
++GLP ++ G+ V R + R +P DERLTTV A Q L
Sbjct: 81 EVVVGLPRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRAS 140
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
++ + + +D AA ILQ LD
Sbjct: 141 GINERDGRKVIDQAAAVEILQTWLD 165
>gi|311114976|ref|YP_003986197.1| putative Holliday junction resolvase [Gardnerella vaginalis ATCC
14019]
gi|310946470|gb|ADP39174.1| possible Holliday junction resolvase [Gardnerella vaginalis ATCC
14019]
Length = 166
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 13/144 (9%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLN 78
IDLG R+G A+SDP FAHP + ++L+ I +++ +IGLPL
Sbjct: 14 LGIDLGDARVGTALSDPELTFAHPAGNVQSYGDSFNAIEDVLNIIEDNSVSRVVIGLPLQ 73
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126
++G+EG R + N++ R + V+ DERLTTV+A + L+D +
Sbjct: 74 LDGTEGKSAKKARRWGTNLVKRMKSLFDYGDWSLDFIPEVVWKDERLTTVTAHKQLLDAD 133
Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
S +K VD +A LILQ +D
Sbjct: 134 FSTRKHRPMVDQQSAVLILQSAID 157
>gi|282858812|ref|ZP_06267957.1| RNAse YqgF [Prevotella bivia JCVIHMP010]
gi|282588381|gb|EFB93541.1| RNAse YqgF [Prevotella bivia JCVIHMP010]
Length = 139
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++DP R A+ + ++ L+++I +E + +IG
Sbjct: 1 MGRILAIDYGKKRTGIAVTDPLRIIANGLATVPTSELYDY---LVAYIRSEAVDKIVIGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P+ NG F + + +P F+DER T+V A Q +I V +K R
Sbjct: 58 PIQANGQPSENFVRVEQFANRWKKVQPTIPIEFYDERFTSVIAHQAMIVGGVKKKTRRED 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDFM 134
>gi|50842659|ref|YP_055886.1| endonuclease [Propionibacterium acnes KPA171202]
gi|62900965|sp|Q6A8I7|RUVX_PROAC RecName: Full=Putative Holliday junction resolvase
gi|50840261|gb|AAT82928.1| predicted endonuclease involved in recombination [Propionibacterium
acnes KPA171202]
Length = 160
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVHT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 74 NGTEQLAAQDVRDAGRQLTEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133
Query: 140 AAALILQEVLDRISFLES 157
AA IL+ VL+++ +S
Sbjct: 134 AAVAILEHVLEQVRLGQS 151
>gi|299140625|ref|ZP_07033763.1| Holliday junction resolvase [Prevotella oris C735]
gi|298577591|gb|EFI49459.1| Holliday junction resolvase [Prevotella oris C735]
Length = 144
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I SID G KR GLA++D + A+ + + L +I E + +IG
Sbjct: 1 MARILSIDYGKKRTGLAVTDSLQIIANGLATVSTSSL---IDYLKDYIAKEPVERIVIGR 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ- 134
P +G + FV+ +P ++DER T+V A Q++ID V +K R +
Sbjct: 58 PTQPDGRPSENLVRVEQFVNRWRKLVPNIPIEYYDERFTSVLAHQVVIDSGVKKKVRKEN 117
Query: 135 --KVDSIAAALILQEVL 149
+D I+A +ILQ+ +
Sbjct: 118 KGLIDEISATIILQDYM 134
>gi|15924606|ref|NP_372140.1| hypothetical protein SAV1616 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927196|ref|NP_374729.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus N315]
gi|156979934|ref|YP_001442193.1| hypothetical protein SAHV_1603 [Staphylococcus aureus subsp. aureus
Mu3]
gi|262048611|ref|ZP_06021494.1| hypothetical protein SAD30_1007 [Staphylococcus aureus D30]
gi|262051271|ref|ZP_06023495.1| hypothetical protein SA930_1702 [Staphylococcus aureus 930918-3]
gi|13701414|dbj|BAB42708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247387|dbj|BAB57778.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus Mu50]
gi|156722069|dbj|BAF78486.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|259160908|gb|EEW45928.1| hypothetical protein SA930_1702 [Staphylococcus aureus 930918-3]
gi|259163258|gb|EEW47817.1| hypothetical protein SAD30_1007 [Staphylococcus aureus D30]
gi|285817298|gb|ADC37785.1| Putative Holliday junction resolvase [Staphylococcus aureus
04-02981]
Length = 123
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 33 ISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHST 90
+SD A + + +L+ I N+ +IGLP NMN S G R ++
Sbjct: 1 MSDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEAS 60
Query: 91 RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ +++ + V WDERL+T++A++ L++ +VSR+KR Q +D +AA ILQ LD
Sbjct: 61 LTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLD 120
Query: 151 RI 152
+
Sbjct: 121 SL 122
>gi|300088456|ref|YP_003758978.1| Holliday junction resolvase YqgF [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299528189|gb|ADJ26657.1| Holliday junction resolvase YqgF [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 143
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + +D+G K +G+A+SDP A P L R A ++ + + A +IGLP
Sbjct: 3 ERVIGLDVGDKWVGVALSDPMGVIARPLTILERCDEITDAEAVVRLVGEHDAARVVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK--KRIQ 134
+NG G + + F + VP +F DER +T SA+ I+ RK +
Sbjct: 63 RLLNGVVGTQAERVQYFARRLAS-LTDVPVIFQDERFSTASAKDIMKSNRRYRKGFYSRE 121
Query: 135 KVDSIAAALILQEVLDR 151
+ D++AAA+ILQ+ LD
Sbjct: 122 RDDAVAAAVILQDWLDE 138
>gi|257063514|ref|YP_003143186.1| conserved hypothetical protein TIGR00250 [Slackia
heliotrinireducens DSM 20476]
gi|256791167|gb|ACV21837.1| conserved hypothetical protein TIGR00250 [Slackia
heliotrinireducens DSM 20476]
Length = 138
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D+G RIGLA+SD R A P L V E + I + GLP
Sbjct: 2 RVLALDIGEVRIGLAVSDAAGRIASPLKVLPADVVLNDGREFRMLVEDWEIEHLVCGLPY 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
M G EGP+ S + + + +P F DERL++ A++IL + + + KVD
Sbjct: 62 TMAGEEGPQAASIKEKARQIASAR-DLPLSFVDERLSSAEAKRILREEGLDERSMRGKVD 120
Query: 138 SIAAALILQEVLDR 151
IAA+L LQ LD
Sbjct: 121 MIAASLFLQAWLDS 134
>gi|149191949|ref|ZP_01870180.1| Holliday junction resolvase-like protein [Vibrio shilonii AK1]
gi|148834216|gb|EDL51222.1| Holliday junction resolvase-like protein [Vibrio shilonii AK1]
Length = 141
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P K ++ + + ++GL
Sbjct: 3 SRTIIAFDYGTKSIGSAIGQEVTGTASPLKAFKAKDGIPNWDDIEAMLKEWQPDLIVVGL 62
Query: 76 PLNMNGSE-GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + F N + + + DERL+T A+ L +M +
Sbjct: 63 PTDLHGKALEEITARAKKFA-NRVHGRFGLQVELHDERLSTAEARAELFEMGGYKALSKG 121
Query: 135 KVDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 122 NVDCQSAVVILESWFE 137
>gi|295111267|emb|CBL28017.1| conserved hypothetical protein TIGR00250 [Synergistetes bacterium
SGP1]
Length = 146
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGL 75
+ ++D+G+ R+G AISDP R A + + ++G+
Sbjct: 7 GRVLALDVGSARVGAAISDPMRLIAQGLAVWPVVDRDGGWRRKFEACLVQYAPTLVLVGM 66
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +G+ GP V + + F WDER TTV A + +I+ VSR R Q+
Sbjct: 67 PTRTDGTRGPEAERVAKLVDLLRAGHPDLAFDTWDERFTTVMAHRAMIEGGVSRSGRRQR 126
Query: 136 VDSIAAALILQEVLDR 151
VD IAA LIL+ L R
Sbjct: 127 VDKIAAVLILESWLAR 142
>gi|149370600|ref|ZP_01890289.1| Holliday junction resolvase-like protein [unidentified eubacterium
SCB49]
gi|149356151|gb|EDM44708.1| Holliday junction resolvase-like protein [unidentified eubacterium
SCB49]
Length = 136
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + A + K+ L S++ EN+ A ++G
Sbjct: 1 MGRILAIDYGGKRTGIAVTDEMQIIASGLTTVETSKLLPF---LESYLANENVTALVVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +G+ + F+ + +P DER T+ A Q +ID + +K+R K
Sbjct: 58 PTQKDGTPSSIEEEIQKFLKRFVKLYPLLPIHRQDERYTSKMAFQTMIDSGLKKKQRRNK 117
Query: 136 --VDSIAAALILQEVL 149
VD IAA +ILQE +
Sbjct: 118 ALVDEIAATIILQEFM 133
>gi|294790798|ref|ZP_06755956.1| putative Holliday junction resolvase [Scardovia inopinata F0304]
gi|294458695|gb|EFG27048.1| putative Holliday junction resolvase [Scardovia inopinata F0304]
Length = 166
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG RIGLA+SDP FAHP + +++ I ++ ++G PLN
Sbjct: 8 LGLDLGNARIGLALSDPELTFAHPEGVIQAGGDYFYAIDQIVDVIEDREVSHIVLGYPLN 67
Query: 79 MNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
++G+EG R F + + + DER+TTVSA +L+ +S ++
Sbjct: 68 LDGAEGKSAKKVRRFAQALSRRLEEAGIDSQIELTDERMTTVSAHDLLLQAGMSSRQHRA 127
Query: 135 KVDSIAAALILQEVLDR 151
VD+ +A +ILQ LD
Sbjct: 128 VVDTQSAVVILQSALDS 144
>gi|303237217|ref|ZP_07323787.1| RNAse H domain protein, YqgF family [Prevotella disiens FB035-09AN]
gi|302482604|gb|EFL45629.1| RNAse H domain protein, YqgF family [Prevotella disiens FB035-09AN]
Length = 139
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I S+D G KR GLA++DP + A+ + ++ L ++ EN+ ++G
Sbjct: 1 MGRILSVDYGKKRTGLAVTDPLQIIANGLVTVATSELFDF---LKDYVQRENVECIVVGR 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P +NG + FV+ +P ++DER T+ AQQ ++ V +K R
Sbjct: 58 PTQLNGQPSENLSRVEQFVNRWRKAMPLIPVEYYDERFTSALAQQAILAGGVKKKMRRED 117
Query: 133 IQKVDSIAAALILQEVL 149
VD ++A +ILQ+ +
Sbjct: 118 KGLVDEVSATIILQDYM 134
>gi|255994297|ref|ZP_05427432.1| putative Holliday junction resolvase [Eubacterium saphenum ATCC
49989]
gi|255993010|gb|EEU03099.1| putative Holliday junction resolvase [Eubacterium saphenum ATCC
49989]
Length = 148
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D+G IG+A SD A + R+ + + +++ + ++ + +IG+PL
Sbjct: 2 RVLALDVGEATIGVARSDALGITAQGLLSIFRESIKKDTTKIIDILREDDYSEIVIGMPL 61
Query: 78 NMNGS-EGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
N G + + T F + ++ + F+DER TT A+ +LI + KK
Sbjct: 62 NTYGEAKNEQSIFTEKFADKLQNKLRSSGMSNIKVEFYDERFTTKMARDVLIQGGIKGKK 121
Query: 132 RIQKVDSIAAALILQEVLDRISFLES 157
+ +D AA ++LQ LD+ S+ +
Sbjct: 122 QKDVIDKQAAVILLQSYLDKKSYRDE 147
>gi|323344259|ref|ZP_08084485.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC
33269]
gi|323094988|gb|EFZ37563.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC
33269]
Length = 137
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I SID G KR G+A++DP + A + ++ L+ ++ E + +IG P+
Sbjct: 3 RILSIDYGRKRTGVAVTDPLQLIAGGLATVATSELFNY---LMQYVQHEEVERIVIGKPM 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
NG + FV +P ++DER T+V AQ+++ID + +K R K
Sbjct: 60 QTNGQPSENLQRVEQFVDRWRKAMPQIPIEYYDERFTSVIAQRVIIDSGLKKKARQNKAL 119
Query: 136 VDSIAAALILQEVL 149
VD I+A +IL++ +
Sbjct: 120 VDEISATIILEDWM 133
>gi|146300283|ref|YP_001194874.1| Holliday junction resolvase-like protein [Flavobacterium johnsoniae
UW101]
gi|189046096|sp|A5FGX1|RUVX_FLAJO RecName: Full=Putative Holliday junction resolvase
gi|146154701|gb|ABQ05555.1| Holliday junction resolvase YqgF [Flavobacterium johnsoniae UW101]
Length = 138
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 5/139 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I SID G KR G+A++D + A + + L + E + A +IG P
Sbjct: 3 RILSIDYGQKRTGIAVTDEMQIIASGLTTIPTHTLIDF---LKDYFAKEKVEAVLIGEPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135
MNG FV + + + + DER T+ A Q ++D +S+K+R
Sbjct: 60 QMNGQPSESASVINGFVTHFSNIFPDMKVIRVDERFTSKMAFQTMLDSGLSKKQRQNKGL 119
Query: 136 VDSIAAALILQEVLDRISF 154
+D I+A ++LQ+ L F
Sbjct: 120 IDEISATIMLQDYLSSKRF 138
>gi|315225648|ref|ZP_07867456.1| Holliday junction resolvase [Capnocytophaga ochracea F0287]
gi|314944375|gb|EFS96416.1| Holliday junction resolvase [Capnocytophaga ochracea F0287]
Length = 143
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +ID GTKR G+A++DP + A + + L + E + AF+IG P
Sbjct: 2 RLLAIDYGTKRTGIAVTDPLQIIASGLCTVETPTLLAF---LKQYTAEEAVEAFVIGQPK 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
MN + + F+ + +P DER T+ A Q +ID + +K+R K
Sbjct: 59 RMNSEDSSVEAEIQKFISKLQQEFPEIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKAL 118
Query: 136 VDSIAAALILQEVL 149
+D I+A +ILQE L
Sbjct: 119 IDEISATIILQEFL 132
>gi|156975830|ref|YP_001446737.1| Holliday junction resolvase-like protein [Vibrio harveyi ATCC
BAA-1116]
gi|156527424|gb|ABU72510.1| hypothetical protein VIBHAR_03575 [Vibrio harveyi ATCC BAA-1116]
Length = 136
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG AI A P ++ I ++GLP ++
Sbjct: 1 MAFDFGTKSIGSAIGQEVTGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGLPTDL 60
Query: 80 NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G + + F + + R +P DERL+T A+ L + + +D
Sbjct: 61 HGKDLETITPRAKKFANRLHGR-YGLPVELHDERLSTAEARAELFSIGGYKALSKGNIDC 119
Query: 139 IAAALILQEVLDRI 152
+A +IL+ + +
Sbjct: 120 QSAVVILESWFENL 133
>gi|288939960|ref|YP_003442200.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180]
gi|288895332|gb|ADC61168.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180]
Length = 135
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G ++IG+A+ R A P L + + + I +A ++GLP
Sbjct: 2 TLLGFDFGPRKIGVAVGQTITRSATPLTTLRSQGEKPDWTRIEALIREWQPSALVVGLPF 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
M+ +E F + + + +P DERLT+ A + L + + R ++ VD
Sbjct: 62 QMDDTEVAWSPRVHRFARQL-EGRYRLPVHLVDERLTSREAHRQLAERD-RRTPTLEAVD 119
Query: 138 SIAAALILQEVL 149
++AAALIL+ L
Sbjct: 120 ALAAALILETWL 131
>gi|32130034|sp|Q8FT24|RUVX_COREF RecName: Full=Putative Holliday junction resolvase
Length = 181
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIA 69
P + I +D+GT RIG+A SD R A P + R+ + L+ IT +
Sbjct: 15 PGRRI-GLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDAV 73
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDM 125
++GLP ++ G+ V R + R +P DERLTTV A Q L
Sbjct: 74 EVVVGLPRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRAS 133
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
++ + + +D AA ILQ LD
Sbjct: 134 GINERDGRKVIDQAAAVEILQTWLD 158
>gi|314966608|gb|EFT10707.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL082PA2]
gi|315092870|gb|EFT64846.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL060PA1]
gi|315103609|gb|EFT75585.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL050PA2]
gi|327327431|gb|EGE69207.1| putative Holliday junction resolvase [Propionibacterium acnes
HL103PA1]
Length = 160
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVYT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 74 NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133
Query: 140 AAALILQEVLDRISF--LESSKG 160
AA IL+ VL+++ LE++ G
Sbjct: 134 AAVAILEHVLEQVRLGQLETATG 156
>gi|281423117|ref|ZP_06254030.1| putative Holliday junction resolvase [Prevotella oris F0302]
gi|281402453|gb|EFB33284.1| putative Holliday junction resolvase [Prevotella oris F0302]
Length = 144
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I SID G KR GLA++D + A+ + + L +I E + +IG
Sbjct: 1 MARILSIDYGKKRTGLAVTDSLQIIANGLATVSTSSL---IDYLKDYIAKEPVERIVIGR 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ- 134
P +G + FV+ +P ++DER T+V A Q++ID V +K R +
Sbjct: 58 PTQPDGRPSENLARVEQFVNRWRKLVPNIPIEYYDERFTSVIAHQVVIDSGVRKKVRKEN 117
Query: 135 --KVDSIAAALILQEVL 149
+D I+A +ILQ+ +
Sbjct: 118 KGLIDEISATIILQDYM 134
>gi|307565554|ref|ZP_07628034.1| RNAse YqgF [Prevotella amnii CRIS 21A-A]
gi|307345713|gb|EFN91070.1| RNAse YqgF [Prevotella amnii CRIS 21A-A]
Length = 139
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++DP R A+ + + L +I E + ++G
Sbjct: 1 MGRIIAIDYGKKRTGIAVTDPLRIIANGLATV---STPELYAFLQEYIQREKVDLIVMGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P ++G + FV VP ++DER T+ A Q +I V +K R
Sbjct: 58 PTQLSGKPSENMGRVEQFVLRWKKACPSVPIEYYDERFTSALAHQAMISGGVKKKVRRQD 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDFM 134
>gi|294621483|ref|ZP_06700651.1| conserved hypothetical protein [Enterococcus faecium U0317]
gi|291598924|gb|EFF29973.1| conserved hypothetical protein [Enterococcus faecium U0317]
Length = 124
Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGL 75
+ +D+G+K +G+A+SDP A + + + L + + F++GL
Sbjct: 2 RVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR +
Sbjct: 62 PKNMNNSIGPRAEASMSYGEK-IKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRKK 120
>gi|311739531|ref|ZP_07713366.1| Holliday junction resolvase family protein [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305347|gb|EFQ81415.1| Holliday junction resolvase family protein [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 183
Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
++D+GT RIG+A+S+ A P + R+ + +L I + +
Sbjct: 14 PGQGRRLALDVGTVRIGVAVSNREATLATPVETVHRETGFKDRDKGDIDRILELIDSYDA 73
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120
++GLP ++ G+ V + + R KV P DERLTTV+A
Sbjct: 74 VEVVVGLPRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLADERLTTVAATT 133
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
L VS KK + +D AA ILQ LD R S L S
Sbjct: 134 ALRASGVSEKKGRKVIDQAAAVEILQTWLDGRASALRSH 172
>gi|289450300|ref|YP_003474401.1| YqgF family RNAse H domain-containing protein [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289184847|gb|ADC91272.1| RNAse H domain protein, YqgF family [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 140
Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFII 73
+ ID G RIG+A+SD A + ++ T+ + +AA +I
Sbjct: 1 MEKYLGIDYGQARIGVAVSDALGITARGIETICWNGEEFTKPVNRICELAKQNGVAAIVI 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +G G R +++ + ++ DER TTV A ++L + V ++++
Sbjct: 61 GLPRRTDGKIGVSEEKARQLG-DLLQELTGLNIIWRDERYTTVLAHRVLNESTVKKRQKR 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD +AA +ILQ+ L+ +
Sbjct: 120 SVVDQVAAEIILQDFLESLR 139
>gi|269925209|ref|YP_003321832.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC
BAA-798]
gi|269788869|gb|ACZ41010.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC
BAA-798]
Length = 149
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID G KRIG+A+SDP A + R + E+ EN+ ++GLPL+
Sbjct: 3 VMGIDPGRKRIGIALSDPTGLLATAYKVIHRTTSDRDLEEIRRIAEHENVEKIVVGLPLH 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
M+G EG R I+ +P DERLT+V A++ L++ K +
Sbjct: 63 MSGYEGEEAVRARELAKQ-IETATGLPVELVDERLTSVEAERRLLESRRKLGKLGRKKLA 121
Query: 136 VDSIAAALILQEVLDRISFLESS 158
+D+ AAA++LQ+ LD+ + +
Sbjct: 122 IDAEAAAVLLQDYLDQERLRQRA 144
>gi|164685861|ref|ZP_01947456.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU
Goat Q177']
gi|212219592|ref|YP_002306379.1| Holliday junction resolvase-like protein [Coxiella burnetii
CbuK_Q154]
gi|226725506|sp|B6J6M4|RUVX_COXB1 RecName: Full=Putative Holliday junction resolvase
gi|164601378|gb|EAX31927.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU
Goat Q177']
gi|212013854|gb|ACJ21234.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
Length = 141
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 15 PNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
PNQ + D G KRIG+A+ A+ L + ++ I T + +
Sbjct: 2 PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVLDWEKIKMLIETWHANVLV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P NM+GSE + R F + R +P DERLTT+ A++ + ++ KR
Sbjct: 62 VGIPYNMDGSEQTLTFAARKFARKLQTR-FGLPLSMVDERLTTIEAKRQWYEQGLT--KR 118
Query: 133 IQKVDSIAAALILQEVL 149
Q +D+ AA LIL++ L
Sbjct: 119 PQHLDNYAAKLILEQWL 135
>gi|331005506|ref|ZP_08328884.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC1989]
gi|330420698|gb|EGG94986.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC1989]
Length = 139
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 1/130 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D G + IG+A A + K ++ + + ++GLPLNM
Sbjct: 6 LAFDYGLQNIGVAYGQSLTGQATELAPINAKDGIPRWEDIAALLQEWKPTTVVVGLPLNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ SE R F + R V F DERL+T A+Q + +DSI
Sbjct: 66 DDSESELCARARKFGRRLHGR-FSVDVEFMDERLSTFDAKQEAKARGHKGNYKQNPIDSI 124
Query: 140 AAALILQEVL 149
AA LIL+
Sbjct: 125 AARLILESWF 134
>gi|198284748|ref|YP_002221069.1| Holliday junction resolvase YqgF [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218665123|ref|YP_002427428.1| hypothetical protein AFE_3061 [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198249269|gb|ACH84862.1| Holliday junction resolvase YqgF [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218517336|gb|ACK77922.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 143
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ P+ ID G +RIG+A+ L + + A ++G
Sbjct: 4 RSGPLLGIDFGERRIGIAVLGESGLAPQGVATLRNGECGPDWDGFARILKEWQPRALVLG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPL+M+GSEG V R F ++ R+ +P + DERL++ +A +L + +S KKR +
Sbjct: 64 LPLHMDGSEGFMVGRVRKFAESL-QRRFPLPIHWVDERLSSHAADLVLKERELSHKKRGR 122
Query: 135 KVDSIAAALIL 145
+D AA IL
Sbjct: 123 LLDQAAACEIL 133
>gi|319951884|ref|YP_004163151.1| holliday junction resolvase [Cellulophaga algicola DSM 14237]
gi|319420544|gb|ADV47653.1| Holliday junction resolvase [Cellulophaga algicola DSM 14237]
Length = 136
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D G R G+A++D + A + K++ L +++ TE + ++G
Sbjct: 1 MARIVALDYGKVRTGIAVTDELQLIASGLTTVATKELIDF---LKNYVATEKVELLVVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN F+ + + DER T+ A Q +ID + +K+R K
Sbjct: 58 PKQMNNQVSESEALILPFIEKLKASFPTIKIERQDERFTSKMAFQTMIDSGLKKKQRRDK 117
Query: 136 --VDSIAAALILQEVLDRI 152
VD I+A +ILQ L+RI
Sbjct: 118 ALVDEISATIILQAYLNRI 136
>gi|260903834|ref|ZP_05912156.1| Holliday junction resolvase-like protein [Brevibacterium linens
BL2]
Length = 150
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G+ RIG+A SDP A P + R L I +IG P ++
Sbjct: 1 MGLDIGSVRIGVAASDPDGILATPLTVVRRTDEPAALKTLREIIDEYEPIELLIGDPKSL 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS + F I P DER TTV A L + ++R + VD+
Sbjct: 61 DGSARAAAATALEFAKR-ISAATATPIRLVDERFTTVEAHHALAAAGKNSRQRREIVDAQ 119
Query: 140 AAALILQEVLDR 151
AA +ILQ L+
Sbjct: 120 AAVIILQNALEY 131
>gi|225012716|ref|ZP_03703151.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A]
gi|225003249|gb|EEG41224.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A]
Length = 140
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ID GTKR GLA +DP + A L +V L + E + F++G
Sbjct: 1 MGSLIGIDFGTKRTGLACTDPLKIIASGLKNLSTPEVIPF---LKKYCEMEEVDTFVVGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
PL +G+ + F+ + ++ +DER T+ A Q +I+ + +K+R
Sbjct: 58 PLQKDGTPAEVEVDIKNFIKKLQNQFPSQSIERYDERYTSKLAFQSMINGGLKKKQRADK 117
Query: 134 QKVDSIAAALILQEVLD 150
+D ++A LILQ LD
Sbjct: 118 GMIDQVSATLILQSYLD 134
>gi|257068796|ref|YP_003155051.1| hypothetical protein Bfae_16350 [Brachybacterium faecium DSM 4810]
gi|256559614|gb|ACU85461.1| conserved hypothetical protein TIGR00250 [Brachybacterium faecium
DSM 4810]
Length = 181
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 7/164 (4%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MS+ P +D+G R+GLA SD A P L R ++
Sbjct: 1 MSVAEGTGAEAGGLPRGVRLGVDVGDVRVGLARSDLDGMIATPVETLERGS---AVARVV 57
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTV 116
++GLP ++NG+EG R F ++ + DERLTTV
Sbjct: 58 EEARELEARVIMVGLPRSLNGAEGAAAQKARDFAAELLTSLASGPTEIEVRMIDERLTTV 117
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+A Q L +K VD +AA +ILQ+ LD + G
Sbjct: 118 TAHQALHRSGRKGRKHRSVVDQVAAVMILQQALDTERATGARAG 161
>gi|159029092|emb|CAO90081.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 162
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 1/139 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KR+G+A D A ++R + + + NI + GLP M
Sbjct: 7 LGLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADLAQFEAIVKERNIKILVAGLPYTM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G G + + + + + +P + DER T++ A++ L +D
Sbjct: 67 AGELGFQAKQVQKYAQKLA-ITLDLPLEYIDERCTSLEAEEFLKAKKQFSSWDKGAIDRE 125
Query: 140 AAALILQEVLDRISFLESS 158
AAA+ILQ+ LDR + +S
Sbjct: 126 AAAIILQQWLDRRRRVNNS 144
>gi|320528373|ref|ZP_08029535.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei
F0204]
gi|320131287|gb|EFW23855.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei
F0204]
Length = 139
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
+DLG+ G++ SD A + K ++L + E ++GL
Sbjct: 3 RYLGLDLGSVTCGVSFSD-TGFIARTIETIRFKPDDYNMALDKVLDIVDREKPDVIVLGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL +N GPR F + +++ +P DER TT A+ IL++ +VSRKKR +K
Sbjct: 62 PLLLNDDVGPRAQICLEFGEVL-EQESGIPVKMQDERFTTAVAESILLEADVSRKKRKKK 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA ILQ LDR
Sbjct: 121 IDQLAAVQILQTWLDR 136
>gi|88812469|ref|ZP_01127718.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231]
gi|88790255|gb|EAR21373.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231]
Length = 143
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 3/138 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
D G +R+G+A+ P A P L ++ LL I A ++G+P +
Sbjct: 7 LGFDYGWRRLGVAVGQPLTGGARPVTTLRCRQGQPDWAALLHLIEAWQPTALVVGIPRHT 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQKVD 137
+GS AF + +++ +P DERL++ A+ L + VD
Sbjct: 67 DGSASETTLQAVAFAQRL-EQRGGLPVHQVDERLSSHEARARLQATGRRLRGTTGKALVD 125
Query: 138 SIAAALILQEVLDRISFL 155
AA +IL+ L+ L
Sbjct: 126 QFAAQIILETWLNEQRLL 143
>gi|310287354|ref|YP_003938612.1| resolvase [Bifidobacterium bifidum S17]
gi|309251290|gb|ADO53038.1| resolvase [Bifidobacterium bifidum S17]
Length = 156
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG R+GLA+SDP FAHP + + ++++ I E + ++GLPL
Sbjct: 8 LGVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQ 67
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126
++G+EG R + N+ R + DERLTTVSA + L++
Sbjct: 68 LDGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQ 127
Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
+ ++ VD +A +ILQ LD
Sbjct: 128 LGSRRHRPVVDQQSAVVILQTALD 151
>gi|326335222|ref|ZP_08201418.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325692630|gb|EGD34573.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 148
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
LK I +ID GTKR G+A++D + A + + T+ L + +E++ I
Sbjct: 10 LKAQMRILAIDYGTKRCGIAVTDELKLIASALATV---ETTELLDFLQQYCQSESVERII 66
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLP +G + +F+ + ++ +P +DER T+ A IL++ +KKR
Sbjct: 67 IGLPKQTSGEPSESEAAIVSFMEKLQEKLPEIPVSRYDERFTSKIASHILVESGTKKKKR 126
Query: 133 --IQKVDSIAAALILQEVLDRI 152
+D I+A LILQ+ L +
Sbjct: 127 QDKALLDRISATLILQDYLSSL 148
>gi|254427533|ref|ZP_05041240.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881]
gi|196193702|gb|EDX88661.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881]
Length = 133
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GT++IG+A + A P L K ++ + + A ++GLPLN
Sbjct: 2 ILAFDYGTQKIGVASGNMLLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS+ R F + + R DERL+T A++ + + +VDS
Sbjct: 62 MDGSDSESTARARKFANRLHGR-FGKKVWLVDERLSTREARER---TGIQKAD--PRVDS 115
Query: 139 IAAALILQEVL 149
+AA +I +
Sbjct: 116 MAAVVIAEGYF 126
>gi|302525837|ref|ZP_07278179.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4]
gi|302434732|gb|EFL06548.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4]
Length = 166
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFI 72
++D+G+ R+G+A+SDP A P L R K L +T + I
Sbjct: 17 PGRGRRLAVDVGSVRVGVALSDPAPVLASPLVTLSRDAKDDSDLDRLAELVTEHEVVEVI 76
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP + +G A+ + R VP DERLTTV+A ++L V +K+
Sbjct: 77 VGLPRTLANRQGAAADLALAYAEKLAGRVGDVPVRLADERLTTVTASRMLSQRGVKGRKQ 136
Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
VD AA ILQ LD + + KG
Sbjct: 137 RAVVDQAAAVEILQAWLDAAAAHRARKG 164
>gi|255325070|ref|ZP_05366176.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
gi|255297635|gb|EET76946.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
Length = 183
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
++D+GT RIG+A+S+ A P + R+ + +L I + +
Sbjct: 14 PGQGRRLALDVGTVRIGVAVSNREATLATPVETVRRETGFKDRDKGDIDRILELIDSYDA 73
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120
++GLP ++ G+ V + + R KV P DERLTTV+A
Sbjct: 74 VEVVVGLPRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLADERLTTVAATT 133
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
L VS KK + +D AA ILQ LD R S L S
Sbjct: 134 ALRASGVSEKKGRKVIDQAAAVEILQTWLDGRASALRSH 172
>gi|169831078|ref|YP_001717060.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
audaxviator MP104C]
gi|226725511|sp|B1I373|RUVX_DESAP RecName: Full=Putative Holliday junction resolvase
gi|169637922|gb|ACA59428.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
audaxviator MP104C]
Length = 141
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D+G +RIG+A++D A+P L R + + I + + GLP
Sbjct: 2 RLMGLDIGDRRIGVALTDENGVAAYPLEVLERTSPEKDLRRITEIIDQYGVERVVAGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
++G GP+ +F+ + R VP + WDERLTT +++L+ ++ R++R + VD
Sbjct: 62 TLSGQIGPQGDKVLSFLDKLRVRST-VPVITWDERLTTAEVEKLLVSADLGRRRRRKVVD 120
Query: 138 SIAAALILQEVLDRIS 153
+AA LIL L+
Sbjct: 121 KLAATLILNSYLNSRK 136
>gi|78355361|ref|YP_386810.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|146325569|sp|Q316N1|RUVX_DESDG RecName: Full=Putative Holliday junction resolvase
gi|78217766|gb|ABB37115.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 144
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID GT+R G+A++D A PR +V ELLS + E A ++GLPL
Sbjct: 4 LGIDYGTRRTGIAVTDGAGMMAFPRRTIVMSTRDAFFAELLSVVEEERPAGVVVGLPLLA 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G E R FV + R+ +P E L++ A + L + +S ++R VD
Sbjct: 64 GGEETLITRQVRNFVARL-RRRSSLPVYLVAEELSSFEAGEDLREAGLSFREREAVVDQQ 122
Query: 140 AAALILQEVLD 150
AA IL+ L+
Sbjct: 123 AAVRILESFLN 133
>gi|313764299|gb|EFS35663.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL013PA1]
gi|313771982|gb|EFS37948.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL074PA1]
gi|313791986|gb|EFS40087.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL110PA1]
gi|313802064|gb|EFS43298.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL110PA2]
gi|313807675|gb|EFS46162.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL087PA2]
gi|313810182|gb|EFS47903.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL083PA1]
gi|313812790|gb|EFS50504.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL025PA1]
gi|313816207|gb|EFS53921.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL059PA1]
gi|313818712|gb|EFS56426.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL046PA2]
gi|313820482|gb|EFS58196.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL036PA1]
gi|313822712|gb|EFS60426.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL036PA2]
gi|313825354|gb|EFS63068.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL063PA1]
gi|313827650|gb|EFS65364.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL063PA2]
gi|313830513|gb|EFS68227.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL007PA1]
gi|313833549|gb|EFS71263.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL056PA1]
gi|313838885|gb|EFS76599.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL086PA1]
gi|314915289|gb|EFS79120.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL005PA4]
gi|314918161|gb|EFS81992.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL050PA1]
gi|314920237|gb|EFS84068.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL050PA3]
gi|314925091|gb|EFS88922.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL036PA3]
gi|314931760|gb|EFS95591.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL067PA1]
gi|314955562|gb|EFS99963.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL027PA1]
gi|314958057|gb|EFT02160.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL002PA1]
gi|314960372|gb|EFT04474.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL002PA2]
gi|314962642|gb|EFT06742.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL082PA1]
gi|314967493|gb|EFT11592.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL037PA1]
gi|314973513|gb|EFT17609.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL053PA1]
gi|314976193|gb|EFT20288.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL045PA1]
gi|314978646|gb|EFT22740.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL072PA2]
gi|314983785|gb|EFT27877.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL005PA1]
gi|314987966|gb|EFT32057.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL005PA2]
gi|314989776|gb|EFT33867.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL005PA3]
gi|315077858|gb|EFT49909.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL053PA2]
gi|315080483|gb|EFT52459.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL078PA1]
gi|315084154|gb|EFT56130.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL027PA2]
gi|315085497|gb|EFT57473.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL002PA3]
gi|315088446|gb|EFT60422.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL072PA1]
gi|315096060|gb|EFT68036.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL038PA1]
gi|315098689|gb|EFT70665.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL059PA2]
gi|315101308|gb|EFT73284.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL046PA1]
gi|315105743|gb|EFT77719.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL030PA1]
gi|315108663|gb|EFT80639.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL030PA2]
gi|327326340|gb|EGE68130.1| putative Holliday junction resolvase [Propionibacterium acnes
HL096PA2]
gi|327330411|gb|EGE72160.1| putative Holliday junction resolvase [Propionibacterium acnes
HL097PA1]
gi|327331785|gb|EGE73522.1| putative Holliday junction resolvase [Propionibacterium acnes
HL096PA3]
gi|327443562|gb|EGE90216.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL013PA2]
gi|327445766|gb|EGE92420.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL043PA2]
gi|327448251|gb|EGE94905.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL043PA1]
gi|327450627|gb|EGE97281.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL087PA3]
gi|327453295|gb|EGE99949.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL092PA1]
gi|327454035|gb|EGF00690.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL083PA2]
gi|328753293|gb|EGF66909.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL025PA2]
gi|328753317|gb|EGF66933.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL020PA1]
gi|328754045|gb|EGF67661.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL087PA1]
gi|328760698|gb|EGF74264.1| putative Holliday junction resolvase [Propionibacterium acnes
HL099PA1]
Length = 147
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 3 LAIDWGKARIGVAASDRDAILAFPVETVHT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 61 NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 120
Query: 140 AAALILQEVLDRISFLES 157
AA IL+ VL+++ +S
Sbjct: 121 AAVAILEHVLEQVRLGQS 138
>gi|314981335|gb|EFT25429.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL110PA3]
gi|315092197|gb|EFT64173.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL110PA4]
Length = 160
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVYT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 74 NGTEQLAAQDVRDAGRQLAEAIDPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133
Query: 140 AAALILQEVLDRISF--LESSKG 160
AA IL+ VL+++ LE++ G
Sbjct: 134 AAVAILEHVLEQVRLGQLETATG 156
>gi|254508602|ref|ZP_05120718.1| conserved hypothetical protein TIGR00250 [Vibrio parahaemolyticus
16]
gi|219548453|gb|EED25462.1| conserved hypothetical protein TIGR00250 [Vibrio parahaemolyticus
16]
Length = 136
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 2/132 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S D GTK IG AI A P ++ I ++GLP ++
Sbjct: 1 MSFDFGTKSIGSAIGQEVTGTASPLRAFKANDGIPNWDDIEKLIKEWQPDLLVVGLPTDL 60
Query: 80 NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G + + F + + R +P DERL+T A+ L +M + VD
Sbjct: 61 HGRDLETITPRAKKFANRLHGR-YGLPVELHDERLSTTEARADLFNMGGYKALSKGNVDC 119
Query: 139 IAAALILQEVLD 150
+A +IL+ +
Sbjct: 120 QSAVVILESWFE 131
>gi|88658457|ref|YP_507277.1| hypothetical protein ECH_0460 [Ehrlichia chaffeensis str. Arkansas]
gi|146325573|sp|Q2GH06|RUVX_EHRCR RecName: Full=Putative Holliday junction resolvase
gi|88599914|gb|ABD45383.1| conserved hypothetical protein TIGR00250 [Ehrlichia chaffeensis
str. Arkansas]
Length = 156
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +++ +K + + I +D G K+IG+A+SD A P VR+ + L
Sbjct: 1 MLYKNVDEFIKVIDKTKRIMGLDFGEKKIGIALSDRTNLIAIPYSVYVRRSSRKDLGSLY 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
S ++ + +IG PL ++G E F + +I R + DER +T A +
Sbjct: 61 SIFVENDVGSIVIGWPLELSGVENELCQKVVMFANRIITR-YKINICLHDERYSTAMATR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
+ N+ RK+ D I+A LILQ+VLD I +
Sbjct: 120 LAKLANIKRKESQAIDDKISAVLILQQVLDIIKVYQ 155
>gi|254491021|ref|ZP_05104202.1| conserved hypothetical protein TIGR00250 [Methylophaga thiooxidans
DMS010]
gi|224463534|gb|EEF79802.1| conserved hypothetical protein TIGR00250 [Methylophaga thiooxydans
DMS010]
Length = 125
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 27 KRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPR 86
K IG+A+ A+P + + ++ + I+GLPLNM+G+E
Sbjct: 2 KNIGIAVGQELTHTANPLTAIKARDGIPDWEQIHKLLDEWKPQLLIVGLPLNMDGTEQDM 61
Query: 87 VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK---KRIQKVDSIAAAL 143
+ R F + + R +P + DERLTT A L M + K ++ VD ++A L
Sbjct: 62 TAAARRFGNRLHGR-FNIPVEWQDERLTTYEA---LDQMGIRSKMDTRQRSDVDQLSAQL 117
Query: 144 ILQEVLDR 151
ILQ L++
Sbjct: 118 ILQSWLNQ 125
>gi|150025799|ref|YP_001296625.1| Holliday junction resolvase-like protein [Flavobacterium
psychrophilum JIP02/86]
gi|167012723|sp|A6H0E5|RUVX_FLAPJ RecName: Full=Putative Holliday junction resolvase
gi|149772340|emb|CAL43818.1| Putative Holliday junction resolvase [Flavobacterium psychrophilum
JIP02/86]
Length = 137
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +ID G KR G+AI+D + A + + L + T E + +IG P
Sbjct: 3 RILAIDYGQKRTGIAITDEMQIIASGLTTIASETSIAF---LRDYFTKEKVEKVLIGEPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
MNG FV + + DER T+ A Q +ID + +K+R K
Sbjct: 60 QMNGEPSQSTDIIEKFVTKFKNNFPDMAIERVDERFTSKMAFQTMIDSGLKKKQRQNKAL 119
Query: 136 VDSIAAALILQEVLDR 151
VD I+A ++LQ+ L R
Sbjct: 120 VDEISATIMLQDYLTR 135
>gi|255327163|ref|ZP_05368238.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296]
gi|255295781|gb|EET75123.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296]
Length = 178
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFIIGLPLN 78
+D+G R+G A+SDP A P L R + +L I + +GLP
Sbjct: 1 MGVDVGNARVGTALSDPDGILATPLKTLRRDAKKNSDRRVLRKLIEVNEVVEVFVGLPKT 60
Query: 79 MNGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
M G + P R + + + K ++ DERLTTVSA + L + VS +
Sbjct: 61 MRGGDSPSTEMAREYAQALRSELDAEEKTHINIWLVDERLTTVSAHRALHEAGVSSRDFK 120
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
VD +AA ILQ LD + +S G
Sbjct: 121 TMVDQVAAVNILQYSLDALKAGQSVAG 147
>gi|256379271|ref|YP_003102931.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827]
gi|255923574|gb|ACU39085.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827]
Length = 170
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
+D+G R+G+A+SDPG A P L R +K + +L+ ++ ++GL
Sbjct: 15 GRRLGVDVGAVRVGVALSDPGAFLATPLVTLSRDEKNGRDLDDLVGLAAEHDVVEVVVGL 74
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + G GP + A+ + +R +P DERLTTV+A ++L V KK+
Sbjct: 75 PRTLAGKHGPAAQAATAYAAALAERVAPLPVRLTDERLTTVTASRVLAQRGVRGKKQRAV 134
Query: 136 VDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 135 VDQAAAVEILQSWLD 149
>gi|218887440|ref|YP_002436761.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|226725512|sp|B8DIJ5|RUVX_DESVM RecName: Full=Putative Holliday junction resolvase
gi|218758394|gb|ACL09293.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 142
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID GTKR G+A SD G A PR +V + ELL+ E A+++GLPL
Sbjct: 4 LGIDYGTKRTGVAASDTGGSMAFPRRTIVMTTRDRFFAELLAVAEEERAEAYVVGLPLLH 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G++ R FV + R+ +P +E L++ A+ L D +S + VD
Sbjct: 64 DGTDTLTTRQVRNFVERL-KRRTTLPVYLMEEFLSSYEAEDDLRDAGLSGRALEAVVDQQ 122
Query: 140 AAALILQEVLD 150
AA ILQ L+
Sbjct: 123 AAVRILQSFLN 133
>gi|240170725|ref|ZP_04749384.1| Holliday junction resolvase-like protein [Mycobacterium kansasii
ATCC 12478]
Length = 141
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 54/126 (42%)
Query: 28 RIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRV 87
RIG+A SDP A P + R + + L++ ++GLP + GP
Sbjct: 2 RIGVACSDPDGILATPVETVRRDRSGKHLRRLVALAAELQAVEVVVGLPRTLADRIGPAA 61
Query: 88 HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQE 147
+ R P DERLTTVSAQ+ L + K++ +D AA ILQ
Sbjct: 62 QDAIDLADALAQRIGPTPVRLVDERLTTVSAQRSLRQAGIRAKEQRAVIDQAAAVAILQT 121
Query: 148 VLDRIS 153
LD+
Sbjct: 122 WLDQRR 127
>gi|283458021|ref|YP_003362629.1| putative endonuclease involved in recombination [Rothia
mucilaginosa DY-18]
gi|283134044|dbj|BAI64809.1| predicted endonuclease involved in recombination [Rothia
mucilaginosa DY-18]
Length = 187
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 6/147 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIGLPLN 78
+D+G R+G A+SDP A P L R + L I + +GLP
Sbjct: 10 MGVDVGNARVGTALSDPDGILATPLKTLRRDAKKNSDRRVLRKLIEVNEVVEVFVGLPKT 69
Query: 79 MNGSEGPRVHSTRAFVHNM-----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
M G + P R + + + K ++ DERLTTVSA + L + VS +
Sbjct: 70 MRGGDSPSTEMAREYAQALRSELDAEEKTHINIWLVDERLTTVSAHRALHEAGVSSRDFK 129
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
VD +AA ILQ LD + +S G
Sbjct: 130 TMVDQVAAVNILQYSLDALKAGQSVAG 156
>gi|210633872|ref|ZP_03297887.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279]
gi|210159041|gb|EEA90012.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279]
Length = 142
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G R G+A+SD R A P L +V A + + GLP M
Sbjct: 4 LALDIGGARTGIAVSDRTGRVASPVKVLPAAEVEGVARTFRMVLEDYEPDVIVCGLPQTM 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G EGP+ R I R +P F DERL++ A++IL + +S K+ KVD I
Sbjct: 64 AGEEGPQAARVREVAGR-ISRVTGLPVEFIDERLSSTEAKRILREQGLSEKQMRGKVDMI 122
Query: 140 AAALILQEVLDRISFLE 156
+A+L LQ LD S E
Sbjct: 123 SASLFLQAWLDAQSRKE 139
>gi|88856252|ref|ZP_01130912.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1]
gi|88814571|gb|EAR24433.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1]
Length = 153
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
ID+G R+G+A SDP A P + R + +L ++G
Sbjct: 2 RTGTRLGIDVGKVRVGVARSDPHGMIATPVETVQRASSS--IKRILLLAVEFEAVELVVG 59
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP+ ++G + P RAF + D + DER+TT+SAQ L + K
Sbjct: 60 LPIALSGRDTPSTADARAFAQELADGS-DITVRLVDERMTTMSAQSALRASGRTTKNSRS 118
Query: 135 KVDSIAAALILQEVLD 150
VD +AA +ILQ LD
Sbjct: 119 VVDQVAAVIILQHALD 134
>gi|311064195|ref|YP_003970920.1| endonuclease involved in recombination [Bifidobacterium bifidum
PRL2010]
gi|313140070|ref|ZP_07802263.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|310866514|gb|ADP35883.1| Endonuclease involved in recombination [Bifidobacterium bifidum
PRL2010]
gi|313132580|gb|EFR50197.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 152
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG R+GLA+SDP FAHP + + ++++ I E + ++GLPL
Sbjct: 4 LGVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQ 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMN 126
++G+EG R + N+ R + DERLTTVSA + L++
Sbjct: 64 LDGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQ 123
Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
+ ++ VD +A +ILQ LD
Sbjct: 124 LGSRRHRPVVDQQSAVVILQTALD 147
>gi|307824756|ref|ZP_07654979.1| Holliday junction resolvase YqgF [Methylobacter tundripaludum SV96]
gi|307734114|gb|EFO04968.1| Holliday junction resolvase YqgF [Methylobacter tundripaludum SV96]
Length = 151
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 2/139 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
D GTK+IG A+ A P + + I A ++G+
Sbjct: 13 TYLGFDFGTKKIGTAVGQTTTATASPLQTIRSINQNPNWEIIGKLIQEWRPAGLVVGISK 72
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136
+GS+ P F + + + +P DE L+T A+Q+L +++VS K +
Sbjct: 73 QADGSDNPVTPRMLKFCRQL-EGRYQLPVFQQDETLSTFEAKQLLFDEVSVSASKLWEVQ 131
Query: 137 DSIAAALILQEVLDRISFL 155
D +AA LILQ L+ + +
Sbjct: 132 DQLAAQLILQTWLNEHAHI 150
>gi|297195517|ref|ZP_06912915.1| Holliday junction resolvase YqgF [Streptomyces pristinaespiralis
ATCC 25486]
gi|297152827|gb|EDY66041.2| Holliday junction resolvase YqgF [Streptomyces pristinaespiralis
ATCC 25486]
Length = 135
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 54/127 (42%)
Query: 34 SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAF 93
DP A P + + V L + ++GLP +++G EGP R+F
Sbjct: 2 CDPDGLLATPVETVPGRDVPAAHRRLRQLVEEYEPIEVVVGLPRSLSGREGPAAKKIRSF 61
Query: 94 VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ VP DER+TTV+A Q L V KK +D AA +ILQ L+
Sbjct: 62 AQTLAQGVKPVPVRLVDERMTTVTATQGLRASGVKSKKGRSVIDQAAAVVILQNALESER 121
Query: 154 FLESSKG 160
++ G
Sbjct: 122 ASGNAPG 128
>gi|257784263|ref|YP_003179480.1| Holliday junction resolvase YqgF [Atopobium parvulum DSM 20469]
gi|257472770|gb|ACV50889.1| Holliday junction resolvase YqgF [Atopobium parvulum DSM 20469]
Length = 140
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D+G RIG+A+SDP A P L ++V A + + + G P
Sbjct: 2 RVLALDIGEVRIGVAVSDPDGAIASPVCVLPAQEVLSHARTFKTVLEDWEPELLLCGRPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ G +GP+ + +P F DERL++ A++IL +S K KVD
Sbjct: 62 TLAGEDGPQAQKITVQAEQIAK-NCQLPLEFTDERLSSAEAKKILRAQGLSEKAMRGKVD 120
Query: 138 SIAAALILQEVLD 150
+AA+L LQ LD
Sbjct: 121 MVAASLFLQSWLD 133
>gi|148272983|ref|YP_001222544.1| Holliday junction resolvase-like protein [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|167012711|sp|A5CRZ4|RUVX_CLAM3 RecName: Full=Putative Holliday junction resolvase
gi|147830913|emb|CAN01857.1| putative Hollyday junction resolvase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 161
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
++D+G RIGLA SDP A P + R + +L+ T + A ++GLPL
Sbjct: 7 LAVDVGKARIGLARSDPHGLIATPVETVPRDPAGSADVRRILAVATEIDCAELVVGLPLA 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G F + D +P DERL+TVSAQ L +K+ +D
Sbjct: 67 LSGRATASTDDAEGFARRLADA-TEIPVRLVDERLSTVSAQGALRASGRGSRKQKPVIDQ 125
Query: 139 IAAALILQEVLDRISFLESSKG 160
+AA +ILQ L+ S G
Sbjct: 126 VAAVIILQHALETERAAGSPPG 147
>gi|311742343|ref|ZP_07716152.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM
15272]
gi|311313971|gb|EFQ83879.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM
15272]
Length = 149
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
D+G RIG+A+ DP A P + LL + + ++GLPL+++G
Sbjct: 2 DVGDVRIGVAMCDPDGMIATPVETVPA--GPAAHARLLQIASEIEVVEIVVGLPLSLSGR 59
Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
EGP RAFV + P DERL+TV+A L D + + + +D AA
Sbjct: 60 EGPAAGKVRAFVQVLA-AMSDRPVRLVDERLSTVTAGSQLRDSGRTGRGTRRVIDQAAAV 118
Query: 143 LILQEVLDRISFLESSKG 160
+ILQ LD + G
Sbjct: 119 VILQNALDAERTRGHAPG 136
>gi|315604257|ref|ZP_07879323.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313963|gb|EFU62014.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 162
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 1/149 (0%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
SL+ I +D+GT R+G++ DP P L+R + L + +
Sbjct: 2 SLRRGVRI-GVDVGTVRVGVSRCDPDGILTMPVETLLRASDSADLRRLEGIVRAHDALEV 60
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
I+GLP ++ G EG R + + V DERL++ A L V +
Sbjct: 61 IVGLPRHLRGGEGVSAKGARKYARRLKTLIPSVRVALVDERLSSNQAHARLRASGVPEHE 120
Query: 132 RIQKVDSIAAALILQEVLDRISFLESSKG 160
+D +AA +IL++ L+ + G
Sbjct: 121 HRSVIDQVAAQIILEQALELERMSGRAPG 149
>gi|332666753|ref|YP_004449541.1| Holliday junction resolvase [Haliscomenobacter hydrossis DSM 1100]
gi|332335567|gb|AEE52668.1| Holliday junction resolvase [Haliscomenobacter hydrossis DSM 1100]
Length = 135
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID GTKR G+A++DP + A + ++ L + E++ AF++G P N+
Sbjct: 1 MAIDYGTKRTGIAVTDPLQIIASGLDTVPTTELMNF---LRQYCQEEDVEAFVVGEPKNL 57
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137
+ + H AFV + + + DER T+ A + + SRKKR K VD
Sbjct: 58 DDTPAQIHHLVMAFVAQIENLFPDKRVILRDERFTSKDATRSIRQSVPSRKKRRDKGLVD 117
Query: 138 SIAAALILQEVLDRISF 154
++A +ILQE L++ +
Sbjct: 118 KVSAVIILQEYLEKYKY 134
>gi|282853868|ref|ZP_06263205.1| RNAse YqgF [Propionibacterium acnes J139]
gi|282583321|gb|EFB88701.1| RNAse YqgF [Propionibacterium acnes J139]
Length = 147
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 3 LAIDWGKARIGVAASDRDAILAFPVETVYT--ADRPVQRLAEIVAEYEPVEVIMGLPVAL 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 61 NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 120
Query: 140 AAALILQEVLDRISF--LESSKG 160
AA IL+ VL+++ LE++ G
Sbjct: 121 AAVAILEHVLEQVRLGQLETATG 143
>gi|323142904|ref|ZP_08077615.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT
12066]
gi|322417332|gb|EFY07955.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT
12066]
Length = 140
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D G IG+A+ + A P + + A ++ + + ++G P+
Sbjct: 2 SVLAFDFGINSIGVAVGNEFTMSATPLEAVKARDGIPNADQINALFKEWQPSYIVVGYPI 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRKKRIQKV 136
NM+G++ R F + + D+ + F DERLTT A ++I K+
Sbjct: 62 NMDGTKEELTFKARKFGNRLADK-FKLKVYFKDERLTTADAKERIFSQYGYKGLASKGKI 120
Query: 137 DSIAAALILQEVLDRIS 153
D ++AALIL+ + +
Sbjct: 121 DCVSAALILEAFFEEKA 137
>gi|110832974|ref|YP_691833.1| endonuclease, Holliday junction resolvase [Alcanivorax borkumensis
SK2]
gi|118597202|sp|Q0VTI2|RUVX_ALCBS RecName: Full=Putative Holliday junction resolvase
gi|110646085|emb|CAL15561.1| endonuclease, possible Holliday junction resolvase [Alcanivorax
borkumensis SK2]
Length = 133
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GT++IG+A + A P L K ++ + + A ++GLPLN
Sbjct: 2 ILAFDYGTQKIGVASGNELLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS+ R F + + R DERL+T A++ KK +VDS
Sbjct: 62 MDGSDSESTVRARKFANRLHGR-FGKKVWLIDERLSTREARER-----TGIKKADSRVDS 115
Query: 139 IAAALILQEVL 149
+AA +I +
Sbjct: 116 MAAVIIAEGFF 126
>gi|325833474|ref|ZP_08165923.1| RNAse H domain protein, YqgF family [Eggerthella sp. HGA1]
gi|325485398|gb|EGC87867.1| RNAse H domain protein, YqgF family [Eggerthella sp. HGA1]
Length = 138
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D+G R+G+A+SDPG R A P L +V A + + GLP
Sbjct: 2 RIMALDIGDTRVGVAVSDPGERVASPVAVLPASEVLNCAKPFQRVLEDWEPELLLCGLPY 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
M G+EGP+ R + D +P+ F DERL++ A++ L + ++ K K+D
Sbjct: 62 TMAGAEGPQAARIRKVAKTISDA-CGIPYEFADERLSSQEAKRSLREKGMTEKAMRGKID 120
Query: 138 SIAAALILQEVLD 150
IAA+L LQ LD
Sbjct: 121 MIAASLFLQAWLD 133
>gi|213966117|ref|ZP_03394304.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213951215|gb|EEB62610.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length = 167
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 6/146 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENI 68
ID+G R+G+A+SDP A P + R + L+ T +
Sbjct: 14 PGRGRRLGIDVGDVRVGVAVSDPDCILATPVETVTRATGRKDPDGPDIDRLVELATELEV 73
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNV 127
++G+PL ++GS G + R V + DER+TTV AQ L +
Sbjct: 74 VEIVVGMPLMLDGSFGTSARKATDVGFRLQRRLGDRVVVHYADERMTTVMAQSRLHAAGI 133
Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
K + +D AA ILQ LDR +
Sbjct: 134 DVKSGRKIIDQAAAVEILQSWLDRRA 159
>gi|258405254|ref|YP_003197996.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM
5692]
gi|257797481|gb|ACV68418.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM
5692]
Length = 142
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
ID G KR+GLA+SD P + R ELL++I T I A +IGLP
Sbjct: 2 RYLGIDFGLKRVGLALSDSQATVVTPLATVQRSTRQALFEELLAYIETYAIEAVVIGLPY 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
++ G+ R F ++ R++ +P + DE LT+ A + L + V R KR +D
Sbjct: 62 DLEGTATLTTRQARNFGTSLA-RRIALPIYYVDEVLTSEFAGEALREAGVPRHKRKDLLD 120
Query: 138 SIAAALILQEVL 149
AA IL+ L
Sbjct: 121 QHAAVAILESFL 132
>gi|332299917|ref|YP_004441838.1| Holliday junction resolvase [Porphyromonas asaccharolytica DSM
20707]
gi|332176980|gb|AEE12670.1| Holliday junction resolvase [Porphyromonas asaccharolytica DSM
20707]
Length = 141
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR GLA++DP + + Q L ++ E + ++G
Sbjct: 1 MARILAIDYGTKRTGLAVTDPLQITPGALDTVPTH---QLLNYLADYLGREKVETIVLGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P M+ + + +A + + + DER T+V AQQ + + + +++R
Sbjct: 58 PTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRQRD 117
Query: 133 IQKVDSIAAALILQEVLDRISFLE 156
VD ++A +ILQ L+ +S L
Sbjct: 118 KGLVDRVSATIILQSYLESLSMLH 141
>gi|57239291|ref|YP_180427.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
Welgevonden]
gi|58579255|ref|YP_197467.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
Welgevonden]
gi|62900902|sp|Q5HAW7|RUVX_EHRRW RecName: Full=Putative Holliday junction resolvase
gi|57161370|emb|CAH58293.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
Welgevonden]
gi|58417881|emb|CAI27085.1| Putative Holliday junction resolvase [Ehrlichia ruminantium str.
Welgevonden]
Length = 156
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I + + + + I +D G K+IG+A+SD A P VRK + L
Sbjct: 1 MLYKNINEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGSLY 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLPL++ G F + MI + + DER +T A +
Sbjct: 61 GILIENDAGSMVIGLPLDLFGMGNELCDKVMLFANRMIKK-YAINIYLHDERYSTAMATR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
+ N+ RK+ + D IAA LILQ+VLD + +
Sbjct: 120 VAKLANIKRKESQKIDDKIAAVLILQQVLDMVKIYQ 155
>gi|94986946|ref|YP_594879.1| endonuclease [Lawsonia intracellularis PHE/MN1-00]
gi|146325577|sp|Q1MR19|RUVX_LAWIP RecName: Full=Putative Holliday junction resolvase
gi|94731195|emb|CAJ54557.1| predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Lawsonia intracellularis PHE/MN1-00]
Length = 142
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID GTK G+A+SD FA P+ ++ + ++L+ I E+ A ++GLP+
Sbjct: 4 VAIDYGTKYTGIAVSDSMGVFAFPKQSIIMTTQKEFFIKLVELIYVESPDALVVGLPVLF 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ SE R F+ + + + +P E L++ A+ L + + K +D
Sbjct: 64 DNSETLITRQVRNFIKRLKHKIM-LPVFLMKEILSSYEAKLDLQSVGYRKNKIKSVLDQQ 122
Query: 140 AAALILQEVLDR 151
AA ILQ LD+
Sbjct: 123 AAVRILQSFLDQ 134
>gi|312139553|ref|YP_004006889.1| holliday junction resolvase [Rhodococcus equi 103S]
gi|325672563|ref|ZP_08152259.1| Holliday junction resolvase family protein [Rhodococcus equi ATCC
33707]
gi|311888892|emb|CBH48205.1| Holliday junction resolvase [Rhodococcus equi 103S]
gi|325556440|gb|EGD26106.1| Holliday junction resolvase family protein [Rhodococcus equi ATCC
33707]
Length = 150
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Query: 28 RIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIAAFIIGLPLNMNGSE 83
RIG+A DP A P + R K +++ + I+GLP + G
Sbjct: 2 RIGVASCDPECILATPVETVPRSKEKGPDAPDIRRIVAIVEEYEAVEVIVGLPQTLRGER 61
Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
G AF + VP DERLTTV+A + L + V K + +D AA
Sbjct: 62 GKAADLASAFARRLRRAVEPVPVRMADERLTTVTASRALRESGVKAKGQRPMIDQAAAVA 121
Query: 144 ILQEVLDRIS 153
ILQ LD S
Sbjct: 122 ILQGWLDERS 131
>gi|298530269|ref|ZP_07017671.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509643|gb|EFI33547.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans
ASO3-1]
Length = 140
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID G KR+GLA+SD + P + R LELL+ I I A ++GLPL
Sbjct: 4 LGIDFGIKRVGLAVSDEKGKMVFPLKTIHRSTRENLFLELLNIIQERGIEAIVLGLPLGP 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G + F+ ++ DR+ +P +E T++ A+ IL + +K+ + +D
Sbjct: 64 DGEKSLTCRQAENFMQSL-DRRTDLPIYTVNEAYTSMEAEDILNRCGIRVEKQKESLDQA 122
Query: 140 AAALILQEVLDRISFLE 156
AA +IL+ L I E
Sbjct: 123 AAVIILESFLAGIPLRE 139
>gi|229817701|ref|ZP_04447983.1| hypothetical protein BIFANG_02973 [Bifidobacterium angulatum DSM
20098]
gi|229785490|gb|EEP21604.1| hypothetical protein BIFANG_02973 [Bifidobacterium angulatum DSM
20098]
Length = 154
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 13/152 (8%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLP 76
IDLG R+GLA+SDP FAHP + V + +++ I EN+ ++GLP
Sbjct: 2 TWLGIDLGDARVGLAVSDPELTFAHPIGNVQVYGDSFRAIDDVIYTIEDENVDHVVVGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILID 124
L ++G EG R + N+ R VP DERLTTVSA + L
Sbjct: 62 LLLSGEEGKSAKKARRWASNLAKRIDLYMQSGETTLEQVPEIELMDERLTTVSAHRQLRQ 121
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
N++ + VD +A +ILQ LD+ + E
Sbjct: 122 ANIAERGHRPVVDQQSAVVILQAALDKRNSRE 153
>gi|228472378|ref|ZP_04057143.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
33624]
gi|228276246|gb|EEK14981.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
33624]
Length = 135
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +ID GTKR G+A++D + A + + T+ L + E + I+GLP
Sbjct: 2 RILAIDYGTKRCGIAVTDELKLIASALATV---ETTELLDFLEKYCQAEQVERIIVGLPK 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135
++G + F+ + ++ +P +DER T+ A IL+ +KKR
Sbjct: 59 QVSGELSESEQAIAPFIEKLQEKLPKIPVSRYDERFTSKIASHILVQSGTKKKKRQDKAL 118
Query: 136 VDSIAAALILQEVLDRI 152
+D I+A LILQ+ L +
Sbjct: 119 LDRISATLILQDYLSSL 135
>gi|166367778|ref|YP_001660051.1| Holliday junction resolvase-like protein [Microcystis aeruginosa
NIES-843]
gi|189046100|sp|B0JWX2|RUVX_MICAN RecName: Full=Putative Holliday junction resolvase
gi|166090151|dbj|BAG04859.1| putative holliday junction resolvase [Microcystis aeruginosa
NIES-843]
Length = 145
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KR+G+A D A ++R + + + NI + GLP M
Sbjct: 7 LGLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADIPQFEAIVKERNIKILVAGLPYTM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G G + + + + + +P + DER T++ A++ L +D
Sbjct: 67 AGELGFQAQQVQKYAQKLA-IALDLPLEYIDERCTSLEAEEFLKAKKQFSSWDKGAIDRE 125
Query: 140 AAALILQEVLDRIS 153
AAA+ILQ+ LDR
Sbjct: 126 AAAIILQQWLDRRR 139
>gi|241662185|ref|YP_002980545.1| Holliday junction resolvase-like protein [Ralstonia pickettii 12D]
gi|240864212|gb|ACS61873.1| Holliday junction resolvase YqgF [Ralstonia pickettii 12D]
Length = 143
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + + + D G KRIG+A+ + R A + + V ++ + F+
Sbjct: 12 MPADGTLLAFDYGEKRIGVALGNSITRSARALETIPNRSVDFRFAQISRLVGEWQPVGFV 71
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P++ +G E P + + F + + R +P + DER ++++AQ D S
Sbjct: 72 VGMPVHPDGEEQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAS---- 122
Query: 133 IQKVDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 123 DDVLDAEAARIILQQFFDE 141
>gi|332290888|ref|YP_004429497.1| Holliday junction resolvase YqgF [Krokinobacter diaphorus 4H-3-7-5]
gi|332168974|gb|AEE18229.1| Holliday junction resolvase YqgF [Krokinobacter diaphorus 4H-3-7-5]
Length = 136
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR G+A++D + A + K + L +++ E + A +IG
Sbjct: 1 MARIIAIDYGTKRTGIAVTDELQMIASGLTTVETKDIFTF---LKKYLSEEKVEAMVIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN F ++ + + + DER T+ A Q ++D + +KKR K
Sbjct: 58 PKRMNNEASDVEVDIVRFRESVEKKHPELTIIRQDERFTSKMAFQTMLDSGIGKKKRQNK 117
Query: 136 --VDSIAAALILQEVL 149
VD I+A +ILQ+ L
Sbjct: 118 ALVDQISATIILQDYL 133
>gi|325284992|ref|YP_004260782.1| Holliday junction resolvase [Cellulophaga lytica DSM 7489]
gi|324320446|gb|ADY27911.1| Holliday junction resolvase [Cellulophaga lytica DSM 7489]
Length = 136
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G R G+A++D + A + K++ L +I E + I+G
Sbjct: 1 MGRLLAIDFGKVRTGIAVTDELQIIASGLTTVATKELITF---LKDYIAKEKVDKIIVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + F+ + + DER T+ A + +ID +++KKR K
Sbjct: 58 PKQMNNTASESEVLIVPFLEKLTAVFPNMIIEREDERFTSKMAFKTMIDSGLNKKKRKNK 117
Query: 136 --VDSIAAALILQEVLDR 151
VD I+A +ILQ L R
Sbjct: 118 ALVDEISATIILQSYLSR 135
>gi|307700938|ref|ZP_07637963.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16]
gi|307613933|gb|EFN93177.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16]
Length = 153
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 66/135 (48%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + +D+G R+G+A + A P L + EL SFI E A +GL
Sbjct: 3 SGRLIGVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETATAVFVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +NG EG R++ + + +P DERL++V+A + L VS ++ +
Sbjct: 63 PRLLNGKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKM 122
Query: 136 VDSIAAALILQEVLD 150
VD +AA IL++ L+
Sbjct: 123 VDQVAAQQILEQALE 137
>gi|255037798|ref|YP_003088419.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053]
gi|254950554|gb|ACT95254.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053]
Length = 137
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +ID G KR G+A++DP + A + ++T L + +E + AF++G+P
Sbjct: 3 RLLAIDYGAKRSGIAVTDPLKIIATALDTVPTHQLTDF---LKKYTLSEQVEAFVVGMPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
++ ++ AFV ++ + DER T+ A Q +I + R K
Sbjct: 60 KLDNTDSENAARVTAFVKSLQKAFPEISVHLHDERFTSSMALQSMIASGSKKSDRRDKGN 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D ++A +ILQ ++
Sbjct: 120 IDKVSATIILQSFMESRR 137
>gi|315655397|ref|ZP_07908297.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333]
gi|315490337|gb|EFU79962.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333]
Length = 152
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 69/141 (48%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID+G RIG+A S G A P L + ELL+ IT N AA +GLP M
Sbjct: 7 LAIDVGKARIGVARSVSGTSLALPVETLQVQTDGSELDELLAIITESNPAAVFVGLPKLM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G EG R++ ++ R +P DERL++ A L + V +++ + VD +
Sbjct: 67 SGKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQVGVCARRQKEMVDQL 126
Query: 140 AAALILQEVLDRISFLESSKG 160
AA IL L+ ++ + G
Sbjct: 127 AAVTILTRALETLTQTGNLPG 147
>gi|116670824|ref|YP_831757.1| Holliday junction resolvase YqgF [Arthrobacter sp. FB24]
gi|116610933|gb|ABK03657.1| Holliday junction resolvase YqgF [Arthrobacter sp. FB24]
Length = 199
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
+D+GT R+G+A+ D A P L R T + +L+ + +GLP
Sbjct: 16 LGVDVGTVRVGVAVCDRDGILATPLKTLERNAKKNTDVRVLAGLASELGAVQVFVGLPRT 75
Query: 79 MNGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+ G E + + + R +P DERL+TV+A + L + +S + +
Sbjct: 76 LKGEEHASARMATDYAELLAEALAARGSDIPVQLVDERLSTVTAHRNLHEAGMSSRNHRK 135
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
VD +AAA ILQ +D ++ ++G
Sbjct: 136 VVDQVAAAGILQHAID----MQKARG 157
>gi|254515815|ref|ZP_05127875.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
NOR5-3]
gi|219675537|gb|EED31903.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
NOR5-3]
Length = 142
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 1/132 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D G +IG+A+ + P L + E+ ++G PL
Sbjct: 9 RVLAFDYGLSQIGVAVGNSDLGTTQPLSILRARDGQPNWAEVTELCQEWQPDLLLVGDPL 68
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+ R F + + ++ + DERL++ +Q + R VD
Sbjct: 69 NMDGTVSEFAQRARKFARRL-EGRLGLSVEMVDERLSSFEVKQQQKEAGHRGDYREHPVD 127
Query: 138 SIAAALILQEVL 149
+AA LIL++ L
Sbjct: 128 DLAAELILRDWL 139
>gi|306818739|ref|ZP_07452461.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35239]
gi|304648425|gb|EFM45728.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35239]
Length = 153
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 66/135 (48%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + +D+G R+G+A + A P L + EL SFI E A +GL
Sbjct: 3 SGRLIGVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +NG EG R++ + + +P DERL++V+A + L VS ++ +
Sbjct: 63 PRLLNGKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKM 122
Query: 136 VDSIAAALILQEVLD 150
VD +AA IL++ L+
Sbjct: 123 VDQVAAQQILEQALE 137
>gi|313902392|ref|ZP_07835795.1| Holliday junction resolvase YqgF [Thermaerobacter subterraneus DSM
13965]
gi|313467323|gb|EFR62834.1| Holliday junction resolvase YqgF [Thermaerobacter subterraneus DSM
13965]
Length = 330
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG++ IG+AISDP A P L R+ + ++ ++G P
Sbjct: 2 RWLGLDLGSRVIGVAISDPEGILARPLASLPRQGDDRDIARVVELARQHGAEGIVVGWPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
++G GP + AF + V WDERL+TV A+++LID ++SR++R +D
Sbjct: 62 RLDGRRGPEAEAAEAFAAGLQAAGVSR-VTLWDERLSTVQAERVLIDADLSRRRRKAIID 120
Query: 138 SIAAALILQEVLDRISFLESSKG 160
+AA +ILQ L+ ++ G
Sbjct: 121 RMAATVILQAFLEAQRRQRATGG 143
>gi|294649066|ref|ZP_06726511.1| Holliday junction resolvase-like protein [Acinetobacter
haemolyticus ATCC 19194]
gi|292825051|gb|EFF83809.1| Holliday junction resolvase-like protein [Acinetobacter
haemolyticus ATCC 19194]
Length = 147
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L P Q I + D GT+++G+AI A+P P K +LL + FI
Sbjct: 4 LNPPQSIMAFDFGTQKMGMAIGQSSIESANPLPLFNMKDGIPDWNQLLKIVKEWQPNLFI 63
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+ SE R F + + + DERLTT A++ L + +
Sbjct: 64 VGLPLNMDDSESELSARARKFARRLRHQ-TNISTWMVDERLTTREAREELEFYQSKGQAK 122
Query: 133 IQKVDSIAAALILQEV 148
DS AAAL++Q
Sbjct: 123 RLSADSFAAALLIQSW 138
>gi|227833216|ref|YP_002834923.1| putative Hollyday junction resolvase [Corynebacterium aurimucosum
ATCC 700975]
gi|262184202|ref|ZP_06043623.1| Holliday junction resolvase-like protein [Corynebacterium
aurimucosum ATCC 700975]
gi|254767510|sp|C3PGN1|RUVX_CORA7 RecName: Full=Putative Holliday junction resolvase
gi|227454232|gb|ACP32985.1| putative Hollyday junction resolvase [Corynebacterium aurimucosum
ATCC 700975]
Length = 182
Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 61/152 (40%), Gaps = 13/152 (8%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-----TQTALELLSFITTENIA 69
P + +D+GT RIG+A+SD R A P + R+ LL I +
Sbjct: 15 PGRR-LGLDVGTVRIGVAVSDRDARLAMPVETVRRETGFKDRDKDDIDRLLDLIHEYDAV 73
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-------YVPFVFWDERLTTVSAQQIL 122
+GLP ++ G+ V + + R P DERLTTV A L
Sbjct: 74 EVAVGLPRDLKGNGSSSVKHAKEIAFRIRRRLAKDDRMKEPPPVRMVDERLTTVVATSAL 133
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
VS K+ +D AA ILQ LD F
Sbjct: 134 RASGVSEKRGRSVIDQAAAVEILQSWLDARHF 165
>gi|298243731|ref|ZP_06967538.1| Holliday junction resolvase YqgF [Ktedonobacter racemifer DSM
44963]
gi|297556785|gb|EFH90649.1| Holliday junction resolvase YqgF [Ktedonobacter racemifer DSM
44963]
Length = 162
Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 16/150 (10%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIG 74
+ ++D+G RIG+A D A P + V + QT + I + +IG
Sbjct: 3 MGRLLALDVGEARIGVAACDATGFLASPYTTIYVTRDEAQTWDAIERLIAETDAEGLVIG 62
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++++G + AFV + + VP FWDERL+TV A+++ + K
Sbjct: 63 LPVSLDGQIHAQGERIMAFVERL-KAHIAVPVTFWDERLSTVEAERLRTQQGGRKSKHTG 121
Query: 135 --------------KVDSIAAALILQEVLD 150
++D++AAA+ LQE LD
Sbjct: 122 GRQHSQGKRRRPGHEIDALAAAVFLQEYLD 151
>gi|50954762|ref|YP_062050.1| hypothetical protein Lxx10920 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|62900966|sp|Q6AFA0|RUVX_LEIXX RecName: Full=Putative Holliday junction resolvase
gi|50951244|gb|AAT88945.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 155
Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 58/141 (41%), Gaps = 1/141 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID+GT RIG++ SD A P + R + +T + I+GLPL +
Sbjct: 7 LGIDVGTVRIGVSCSDLHGTLATPYETVARSGDAADRRRIAEIVTDLGVVEIIVGLPLAL 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G AF ++ V P DERL+TVSA L + K VD
Sbjct: 67 SGVHTASTADAVAFAEALVVE-VGAPVRLVDERLSTVSAHSALRSSGKNAKSSRPVVDQA 125
Query: 140 AAALILQEVLDRISFLESSKG 160
AA +ILQ LD G
Sbjct: 126 AATIILQHALDAERATSRPPG 146
>gi|228470009|ref|ZP_04054925.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
gi|228308390|gb|EEK17228.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
Length = 143
Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P I +ID GTKR GLA++D + + Q L ++ E + ++G
Sbjct: 2 PMARILAIDYGTKRTGLAVTDSLQITPGALDTVPTH---QLLNYLADYLGREEVETIVLG 58
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV---SRKK 131
P M+ + + +A + + + DER T+V AQQ + + + R++
Sbjct: 59 KPTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRRQ 118
Query: 132 RIQKVDSIAAALILQEVLDRISFLE 156
VD ++A +ILQ L+ + L
Sbjct: 119 DKGLVDRVSATIILQSYLESLRMLH 143
>gi|167841114|ref|ZP_02467798.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis MSMB43]
Length = 146
Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 5/149 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ +L + + + D G KRIG+AI + R A + + I
Sbjct: 1 MSAALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++GLPL+ +G+ + F + + + + +P + DER ++V +
Sbjct: 61 DALVVGLPLHPDGAPHEMTQRAKRFGNQL-NGRFNLPVSWVDERYSSVE----ARAGLRA 115
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLES 157
R +VD+ AA +ILQ+ LD +
Sbjct: 116 RGAAADRVDAEAARVILQQYLDGLPDHHE 144
>gi|298207814|ref|YP_003715993.1| Holliday junction resolvase-like protein [Croceibacter atlanticus
HTCC2559]
gi|83850452|gb|EAP88320.1| Holliday junction resolvase-like protein [Croceibacter atlanticus
HTCC2559]
Length = 135
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + A + + L + E + +IG
Sbjct: 1 MARILAIDYGAKRTGIAVTDELKLIASGLTTVRTHDLESF---LKDYFEKEKVELVLIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P ++G+ F++ + F DER T+ A Q +ID + +K+R K
Sbjct: 58 PKQVDGTHSENEERIIHFINRFKKVFPTMQFERVDERFTSKMAFQTMIDSGLKKKQRQNK 117
Query: 136 --VDSIAAALILQEVL 149
VD I+A +ILQ L
Sbjct: 118 ALVDEISATIILQTYL 133
>gi|268316439|ref|YP_003290158.1| Holliday junction resolvase YqgF [Rhodothermus marinus DSM 4252]
gi|262333973|gb|ACY47770.1| Holliday junction resolvase YqgF [Rhodothermus marinus DSM 4252]
Length = 145
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D GT+R+GLA++DP R A P + Q L + E I +IG PL
Sbjct: 4 RVVAVDYGTRRVGLALADPLRVIAQPYGTYAPEAALQVLQRLHA---EEGIETLVIGWPL 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135
G+EG F+ + V V WDER T+ A++ L ++ RKKR +
Sbjct: 61 TEAGTEGEATRRVERFIRRLRRLLPGVQIVRWDERYTSELAKERLREVGGPRKKRRDKGR 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQE L++
Sbjct: 121 IDQMAAVIILQEYLEQ 136
>gi|21672923|ref|NP_660988.1| hypothetical protein CT0082 [Chlorobium tepidum TLS]
gi|32130037|sp|Q8KG86|RUVX_CHLTE RecName: Full=Putative Holliday junction resolvase
gi|21645979|gb|AAM71330.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 142
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
S ++ I ID GTKRIG+A+SDP R FA P + + + + E I
Sbjct: 2 SSSSHKRIIGIDFGTKRIGVALSDPLRMFAQPLGTFDMEGLVRVLSRVRD---DEGIELV 58
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++G P++ G E FV + + +DE ++ +A +IL SRKK
Sbjct: 59 VVGYPMSDKGEENRMTGVIDRFVAELRESFPGTLIETFDEHRSSRTAMKILAASGSSRKK 118
Query: 132 R--IQKVDSIAAALILQEVLDRIS 153
R ++D+ AA LILQ LD S
Sbjct: 119 RNEKGRLDTAAACLILQGYLDSHS 142
>gi|320093739|ref|ZP_08025598.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
178 str. F0338]
gi|319979324|gb|EFW10815.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
178 str. F0338]
Length = 156
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 59/141 (41%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+GT R+G+A +DP + P L R EL + + + ++GLP ++
Sbjct: 3 IGVDVGTVRVGVARTDPEGILSIPVRTLRRADDWSDVEELATIVAQYDAIEVLVGLPRHL 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G EG R + + V DERL++ A Q L V +D +
Sbjct: 63 KGGEGVSAKGARRYARRVKVACPGVRVAMVDERLSSTQAHQRLRARGVPETDHRGVIDQV 122
Query: 140 AAALILQEVLDRISFLESSKG 160
AA +I++ LD + G
Sbjct: 123 AAQIIIEHALDTERISGRAPG 143
>gi|226951815|ref|ZP_03822279.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244]
gi|226837355|gb|EEH69738.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244]
Length = 147
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L P Q I + D GT+++G+AI A+P P K +LL + FI
Sbjct: 4 LNPPQSIMAFDFGTQKMGMAIGQSSIESANPLPLFSMKDGIPDWNQLLKIVKEWQPNLFI 63
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+ SE R F + + + DERLTT A++ L + +
Sbjct: 64 VGLPLNMDDSESELSARARKFARRLRHQ-TNITTWMVDERLTTREAREELEFYQSKGQAK 122
Query: 133 IQKVDSIAAALILQEV 148
DS AAAL++Q
Sbjct: 123 RLSADSFAAALLIQSW 138
>gi|42520048|ref|NP_965963.1| hypothetical protein WD0143 [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|99034738|ref|ZP_01314668.1| hypothetical protein Wendoof_01000517 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|62900994|sp|Q73IL4|RUVX_WOLPM RecName: Full=Putative Holliday junction resolvase
gi|42409785|gb|AAS13897.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 155
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ +KS+ ++ I +D+G K+IG+A SD + A RK +++ L
Sbjct: 1 MLHRNPDEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKDLGYLH 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ +IGLPL M+ E + F + +I + V DE +T A
Sbjct: 61 RIFKENESGSMVIGLPLKMDEQETKWCKTIIQFANKIIKK-YKVNIYLQDESFSTSIATH 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
L +S K + D I+A +ILQ LD+I+ ++
Sbjct: 120 TLKITGISITKSKKIDDKISACIILQRTLDKINTIK 155
>gi|58584953|ref|YP_198526.1| endonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi]
gi|81311607|sp|Q5GRU0|RUVX_WOLTR RecName: Full=Putative Holliday junction resolvase
gi|58419269|gb|AAW71284.1| Predicted endonuclease involved in recombination, RNase H fold,
yqgF family [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 155
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + +KS+ ++ I +D+G K+IG+A SD + A RK +++ L
Sbjct: 1 MLYRDPYEFLKSIPKDKCIMCLDMGEKQIGIAFSDKTQLIATAHSVYYRKNISKDLGYLN 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ +IGLPL ++G + + F + MI + V DE L+T A
Sbjct: 61 RIFKKNEAGSIVIGLPLEIDGQKSEWCKTIIKFANKMIKK-YKVSTYLQDESLSTSIAAH 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
L VS K + D I+A +ILQ LD+I+ ++
Sbjct: 120 TLKISGVSTTKSKRIDDKISACIILQRTLDKINVIK 155
>gi|58617309|ref|YP_196508.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
Gardel]
gi|62900898|sp|Q5FFQ2|RUVX_EHRRG RecName: Full=Putative Holliday junction resolvase
gi|58416921|emb|CAI28034.1| Putative Holliday junction resolvase [Ehrlichia ruminantium str.
Gardel]
Length = 156
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I + + + + I +D G K+IG+A+SD A P VRK + L
Sbjct: 1 MLYKNINEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGGLY 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLPL++ G F + MI + + DER +T A +
Sbjct: 61 GILIENDAGSMVIGLPLDLFGMGNELCDKVMLFANRMIKK-YAINIYLHDERYSTAMATR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
+ N+ RK+ + D IAA LILQ+VLD + +
Sbjct: 120 VAKLANIKRKESQKIDDKIAAVLILQQVLDMVKIYQ 155
>gi|220912768|ref|YP_002488077.1| Holliday junction resolvase YqgF [Arthrobacter chlorophenolicus A6]
gi|219859646|gb|ACL39988.1| Holliday junction resolvase YqgF [Arthrobacter chlorophenolicus A6]
Length = 207
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 5/151 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73
P +D+GT R+G+AI D A P L R + + L++ + E I+
Sbjct: 20 PQGVKLGVDVGTVRVGVAICDRDSILATPYKTLDRNTKKNSDVRLIAKLAEELGAVQVIV 79
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDMNVSR 129
G+P M G E + + VP DERL++VSA + L + +S
Sbjct: 80 GMPRTMKGEEHASARMASDYAGLLAAELAARGLDVPVNMVDERLSSVSAHRNLHEAGMSS 139
Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ + VD +AAA ILQ +D + G
Sbjct: 140 RNHRKVVDQVAAAGILQHAIDMQKARGADVG 170
>gi|269216087|ref|ZP_06159941.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122]
gi|269130346|gb|EEZ61424.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122]
Length = 171
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
++D+G RIG+AISDP R A P L +V A + A + GLP
Sbjct: 20 RYMALDIGDARIGIAISDPAGRVASPLKVLPAAEVLGHAASFRMLVEDWMPDALVCGLPF 79
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ G +GP+ S + + +P F DERL++ A++ L + + KVD
Sbjct: 80 TLAGEQGPQAASLKERAQRIAKA-CDLPLYFSDERLSSSEAKRFLREGGYDERAMRGKVD 138
Query: 138 SIAAALILQEVLDR 151
IAA++ LQ LD
Sbjct: 139 MIAASIFLQSWLDS 152
>gi|261366579|ref|ZP_05979462.1| putative Holliday junction resolvase [Subdoligranulum variabile DSM
15176]
gi|282571398|gb|EFB76933.1| putative Holliday junction resolvase [Subdoligranulum variabile DSM
15176]
Length = 156
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 2/132 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
++D G R GLA D P + K + + A + + GLP N
Sbjct: 4 LAVDYGDARTGLAGCDASETITSPITPQIEEKSMNKVAAAVTQVAVQRGAEGIVCGLPKN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+EG R +R F + + P V WDER TTVSA IL D + +KR ++DS
Sbjct: 64 MDGTEGSRAAKSRRFAQRLAN-TAGRPVVLWDERRTTVSATAILADNDTFGQKRKARLDS 122
Query: 139 IAAALILQEVLD 150
++AA+IL+ L+
Sbjct: 123 VSAAVILESFLN 134
>gi|326773293|ref|ZP_08232576.1| Holliday junction resolvase [Actinomyces viscosus C505]
gi|326636523|gb|EGE37426.1| Holliday junction resolvase [Actinomyces viscosus C505]
Length = 171
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 4/150 (2%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+P I + D+G RIG+A D + P L R + E + + I
Sbjct: 13 FRPGVRI-AFDVGKARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVI 71
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKK 131
+GLP +M G R + ++ R V DERLTTVSA + L + +
Sbjct: 72 VGLPKHMGGGSSSSTRDARQWARDLASRLPQRVCVRLVDERLTTVSAHRDLHAAGLKERS 131
Query: 132 RIQKVDSIAAALILQEVL--DRISFLESSK 159
VD AA +IL++ + +R+S + + +
Sbjct: 132 FRGIVDQAAAVVILEQAITTERMSGVPAGE 161
>gi|229827984|ref|ZP_04454053.1| hypothetical protein GCWU000342_00032 [Shuttleworthia satelles DSM
14600]
gi|229792578|gb|EEP28692.1| hypothetical protein GCWU000342_00032 [Shuttleworthia satelles DSM
14600]
Length = 147
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I ++D G K +G+A +D A + RK K+ +T + I ++GL
Sbjct: 10 IMALDYGAKTVGVACTDSLGLTAQAVETVWRKRENKLRKTLARIDQIARDREIRLILVGL 69
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+NM+ SEG R R F + R + +DERL+T+ A +IL V KR +
Sbjct: 70 PVNMDDSEGERAGMARDFADQVAQR-TGIAVEMYDERLSTIEADEILGKSGVPVGKRKRH 128
Query: 136 VDSIAAALILQEVLDRIS 153
+D ++A LIL+ L+ +
Sbjct: 129 LDELSAQLILERYLEDLR 146
>gi|38233935|ref|NP_939702.1| Holliday junction resolvase-like protein [Corynebacterium
diphtheriae NCTC 13129]
gi|38200196|emb|CAE49877.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 183
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
+D+GT RIGLA+SD G R A P L R+ Q + I +I
Sbjct: 25 PGMGRRLGVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICDNHI 84
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILI 123
++GLP ++ G+ V + + R +V DERLTTV A Q L
Sbjct: 85 VEVVVGLPRDLKGNGSKSVKHAKDVAFRIRRRMHKNGWEHVAVKMADERLTTVVATQALR 144
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD-RISFLES 157
VS KK + VD AA ILQ LD RI+ LE+
Sbjct: 145 ASGVSEKKGRRVVDQAAAVEILQSWLDARINVLEN 179
>gi|330466939|ref|YP_004404682.1| holliday junction resolvase yqgf [Verrucosispora maris AB-18-032]
gi|328809910|gb|AEB44082.1| holliday junction resolvase yqgf [Verrucosispora maris AB-18-032]
Length = 152
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFII 73
+D+G RIG++ SDP A P + R+ V + +E+ + + ++
Sbjct: 10 LGVDVGQVRIGVSRSDPHGVLATPLVTVAREQKPRPDAVPKDLVEIAALVVEHEAVEVVV 69
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+N+ G GP +A+ + + VP DER++TV A + L + V KK+
Sbjct: 70 GLPVNLAGRHGPAAEHVKAYARQLAEVIAPVPVTLTDERMSTVVASRRLAERGVRGKKQR 129
Query: 134 QKVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 130 AVVDQAAAVEILQSWLD 146
>gi|306836212|ref|ZP_07469196.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Corynebacterium accolens ATCC 49726]
gi|304567933|gb|EFM43514.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Corynebacterium accolens ATCC 49726]
Length = 183
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
++D+GT RIG+A S+ A P + RK + + +L I +
Sbjct: 14 PGEGRRLALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDRILELIGAYSA 73
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120
I+GLP +++G+ V + + R KV P DERLTTV+A
Sbjct: 74 VEVIVGLPRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLADERLTTVAATT 133
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLES 157
L VS KK + +D AA ILQ LD R + L S
Sbjct: 134 ALRASGVSEKKGRKIIDQAAAVEILQSWLDGRANALRS 171
>gi|257792292|ref|YP_003182898.1| Holliday junction resolvase YqgF [Eggerthella lenta DSM 2243]
gi|317490213|ref|ZP_07948701.1| hypothetical protein HMPREF1023_02401 [Eggerthella sp. 1_3_56FAA]
gi|257476189|gb|ACV56509.1| Holliday junction resolvase YqgF [Eggerthella lenta DSM 2243]
gi|316910707|gb|EFV32328.1| hypothetical protein HMPREF1023_02401 [Eggerthella sp. 1_3_56FAA]
Length = 138
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D+G R+G+A+SDPG R A P L +V A + + GLP
Sbjct: 2 RIMALDIGETRVGVAVSDPGERVASPVAVLPASEVLNCAKPFQRALEDWEPELLLCGLPY 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
M G+EGP+ R I +P+ F DERL++ A++ L + ++ K K+D
Sbjct: 62 TMAGAEGPQAARIRK-AAKTISDACGIPYEFADERLSSQEAKRSLREKGMTEKAMRGKID 120
Query: 138 SIAAALILQEVLD 150
IAA+L LQ LD
Sbjct: 121 MIAASLFLQAWLD 133
>gi|189347877|ref|YP_001944406.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245]
gi|189342024|gb|ACD91427.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245]
Length = 142
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
SL + I +ID GTKRIG A SDP + FA P + R + +L E I
Sbjct: 2 SLSRKKRIVAIDFGTKRIGFAESDPLQLFAQPVGTVDRA---ELFEKLEQMARNEEIDKI 58
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK- 130
++G PLN +G++ F+ + +P DE ++ A QIL +SRK
Sbjct: 59 LVGYPLNDDGTQNRMTGVIDRFIEELALGFPGLPVERVDEHRSSRDAMQILAASGISRKE 118
Query: 131 -KRIQKVDSIAAALILQEVLD 150
R ++D AA +IL+E LD
Sbjct: 119 RNRKGRLDCAAACVILREYLD 139
>gi|304373321|ref|YP_003856530.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1]
gi|304309512|gb|ADM21992.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1]
gi|330723802|gb|AEC46172.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis MCLD]
Length = 137
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFII 73
+ I ++DLG+K G AISD R + P K K+ +L + I +I
Sbjct: 1 MKRIIALDLGSKSCGFAISDALRITSQPLENFQFKEHKLELVIEKLKDYFEKYEIELVLI 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G PL+M ++ FV N+ +P DER TT A I+I+ +SR+KR
Sbjct: 61 GYPLSMQLNQTKSSKRVDYFV-NLFKTHFDIPIKLVDERQTTKKAHSIMIEQGLSRQKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ D +AA LIL + L++
Sbjct: 120 KNKDKLAAQLILDDYLNQ 137
>gi|46581473|ref|YP_012281.1| hypothetical protein DVU3070 [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601357|ref|YP_965757.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4]
gi|62900991|sp|Q726N6|RUVX_DESVH RecName: Full=Putative Holliday junction resolvase
gi|167012717|sp|A1VA64|RUVX_DESVV RecName: Full=Putative Holliday junction resolvase
gi|46450895|gb|AAS97541.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120561586|gb|ABM27330.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4]
gi|311235125|gb|ADP87979.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris RCH1]
Length = 142
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID G +R G+A++D G R A PR + +ELL + E AF++GLP
Sbjct: 4 LGIDYGQRRTGIAVTDAGGRMAFPRRTIAMTTRDAFFVELLGMVEVECPDAFVVGLPRLP 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G E R FV + R+ +P F E L++ A+ L D + ++ VD
Sbjct: 64 GGEETLTTRQVRNFVERL-KRRTTLPVYFMPEELSSFEAEDDLRDAGLRGRRLEAVVDQQ 122
Query: 140 AAALILQEVL 149
AA IL+ L
Sbjct: 123 AAVRILESFL 132
>gi|86605420|ref|YP_474183.1| Holliday junction resolvase-like protein [Synechococcus sp.
JA-3-3Ab]
gi|146325616|sp|Q2JWE3|RUVX_SYNJA RecName: Full=Putative Holliday junction resolvase
gi|86553962|gb|ABC98920.1| conserved hypothetical protein TIGR00250 [Synechococcus sp.
JA-3-3Ab]
Length = 159
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 1/140 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G +RIG+A SD A + R+ + + ++ ++I ++G+PL
Sbjct: 17 LGLDVGNRRIGVAGSDGLGLLATGLGVIRRRSLPEDIAQVQAWIRRRQATVVVVGIPLLA 76
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + FV + V +P V +E L+TV A+ L + K + +D
Sbjct: 77 DGSVGSQARKVQRFVRAL-QAAVDLPVVTVNEYLSTVQAEWDLRQAGIPAKAQKALIDQQ 135
Query: 140 AAALILQEVLDRISFLESSK 159
+AA+ILQ LD + +SSK
Sbjct: 136 SAAVILQTWLDERRYSQSSK 155
>gi|306821649|ref|ZP_07455247.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304550394|gb|EFM38387.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 142
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 75/134 (55%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D+G ++IG+A+SD A P+ + K + + ++L I +I ++GL
Sbjct: 1 MERILGLDIGKQKIGIAMSDLLGMTAQPKATIRSKNLEEQMQKILDIIKENSIKEVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P ++NG +G + T++FV + + + ++ DER T+ A + L M++ + K +
Sbjct: 61 PKDINGKDGEQALWTKSFVEKLTLKNENIKIIYIDERYTSKLALKNLSHMSMKKVKDKEL 120
Query: 136 VDSIAAALILQEVL 149
+DS+AAA IL+ L
Sbjct: 121 IDSLAAASILETYL 134
>gi|313886409|ref|ZP_07820129.1| RNAse H domain protein, YqgF family [Porphyromonas asaccharolytica
PR426713P-I]
gi|312924125|gb|EFR34914.1| RNAse H domain protein, YqgF family [Porphyromonas asaccharolytica
PR426713P-I]
Length = 141
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR GLA++DP + + Q L ++ E + I+G
Sbjct: 1 MARILAIDYGTKRTGLAVTDPLQITPGALDTVPTH---QLLNYLADYLGREKVETIILGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P M+ + + +A + + + DER T+V AQQ + + + +++R
Sbjct: 58 PTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRQRD 117
Query: 133 IQKVDSIAAALILQEVLDRISFLE 156
VD ++A +ILQ L+ +S L
Sbjct: 118 KGLVDRVSATIILQSYLESLSMLH 141
>gi|54020386|ref|YP_115692.1| hypothetical protein mhp179 [Mycoplasma hyopneumoniae 232]
gi|62900952|sp|Q601M3|RUVX_MYCH2 RecName: Full=Putative Holliday junction resolvase
gi|148887034|sp|Q4A8G3|RUVX_MYCH7 RecName: Full=Putative Holliday junction resolvase
gi|148887035|sp|Q4AAD2|RUVX_MYCHJ RecName: Full=Putative Holliday junction resolvase
gi|53987559|gb|AAV27760.1| putative holliday junction resolvase [Mycoplasma hyopneumoniae 232]
gi|144227506|gb|AAZ44289.2| conserved hypothetical protein [Mycoplasma hyopneumoniae J]
Length = 143
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++DLG K G AISD + ++P R + ++ I+ ++G
Sbjct: 6 RILALDLGIKTCGFAISDQNWKISYPLEQFNFNRYDFASVISRIAFWMKEYPISILVLGY 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL + G PR F +++ + + VF DERLTT AQ L+D+ +S KKR +
Sbjct: 66 PLTLAGKISPRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGISFKKRQKV 124
Query: 136 VDSIAAALILQEVLD 150
+D +AA +IL+ L+
Sbjct: 125 IDKLAAQIILERFLN 139
>gi|256420947|ref|YP_003121600.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588]
gi|256035855|gb|ACU59399.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588]
Length = 136
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP + A + + L ++ E + F+IG
Sbjct: 1 MARILAIDYGKKRTGLAVTDPLQLIASGLTTVATHDLIPY---LKKYLAQEAVELFLIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P N++G + + VP DER T+ A Q +ID + +K R
Sbjct: 58 PKNLDGGATHATPLVVECIRILEKNFPQVPVKKVDERFTSKMAFQTMIDSGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVL 149
VD I+A +ILQE L
Sbjct: 118 GLVDEISATIILQEYL 133
>gi|229815210|ref|ZP_04445546.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM
13280]
gi|229809220|gb|EEP44986.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM
13280]
Length = 142
Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G R G+A+SD R A P L +V A + + GLP M
Sbjct: 4 LALDIGGTRTGIAVSDRTGRVAMPLKVLPACEVEGMARSFRMILEDHEPDVLVCGLPQTM 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G EGP+ R + +P F DERLT+ A++IL + ++ K+ KVD I
Sbjct: 64 SGEEGPQAEHIREVAGRIA-AATGLPLEFIDERLTSTEAKRILREQGLNEKQMRGKVDMI 122
Query: 140 AAALILQEVLDR 151
+A+L LQ LD
Sbjct: 123 SASLFLQAWLDS 134
>gi|326382144|ref|ZP_08203836.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326198874|gb|EGD56056.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis
NRRL B-59395]
Length = 142
Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 66/138 (47%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++P +ID+G+ R+G+A+ DP A P + R K ++ IT + +
Sbjct: 2 IEPRGRRIAIDVGSVRVGVAVCDPDGILATPVETVRRSKDGADVARIVDLITEYDAVGVV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLP + G EGP V + R F + V F+DERLTTV+A L V K
Sbjct: 62 IGLPRTLRGEEGPAVRAARYFGRQLASEAEGVSIEFYDERLTTVTATTALRASGVKAKDA 121
Query: 133 IQKVDSIAAALILQEVLD 150
+D AA ILQ LD
Sbjct: 122 RAVIDQAAAVAILQGWLD 139
>gi|298346852|ref|YP_003719539.1| putative Holliday junction resolvase [Mobiluncus curtisii ATCC
43063]
gi|315656690|ref|ZP_07909577.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|298236913|gb|ADI68045.1| possible Holliday junction resolvase [Mobiluncus curtisii ATCC
43063]
gi|315492645|gb|EFU82249.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 152
Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 68/141 (48%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID+G RIG+A S G A P L + ELL+ IT N AA +GLP M
Sbjct: 7 LAIDVGKARIGVARSVSGTSLALPVKTLQVQPDGSELDELLAIITDSNPAAVFVGLPKLM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G EG R++ ++ R +P DERL++ A L V +++ + VD +
Sbjct: 67 SGKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQAGVCARRQKEMVDQL 126
Query: 140 AAALILQEVLDRISFLESSKG 160
AA IL L+ ++ + G
Sbjct: 127 AAVTILTRALETLTQTGNLPG 147
>gi|295134936|ref|YP_003585612.1| Holliday junction resolvase-like protein [Zunongwangia profunda
SM-A87]
gi|294982951|gb|ADF53416.1| Holliday junction resolvase-like protein [Zunongwangia profunda
SM-A87]
Length = 134
Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D G KR G+A++D + A + + L + E + ++G
Sbjct: 1 MARVMALDYGVKRTGIAVTDELQMIASGLTTVDTSSLLNF---LEDYFKKEKVETVVVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + S F+ ++ + V DER T+ A Q +ID + +KKR K
Sbjct: 58 PKQKDNSASQSEVFIAEFLKKFTEKFPEMKLVRVDERFTSKMAFQTMIDSGLKKKKRQNK 117
Query: 136 --VDSIAAALILQEVL 149
VD ++A +ILQ L
Sbjct: 118 ALVDEVSATIILQSYL 133
>gi|227503537|ref|ZP_03933586.1| YqgF family crossover junction endodeoxyribonuclease
[Corynebacterium accolens ATCC 49725]
gi|227075573|gb|EEI13536.1| YqgF family crossover junction endodeoxyribonuclease
[Corynebacterium accolens ATCC 49725]
Length = 173
Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
++D+GT RIG+A S+ A P + RK + + +L I
Sbjct: 4 PGEGRRLALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDRILELIAAYTA 63
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120
I+GLP +++G+ V + + R KV P DERLTTV+A
Sbjct: 64 VEVIVGLPRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLADERLTTVAATT 123
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLES 157
L VS KK + +D AA ILQ LD R + L S
Sbjct: 124 ALRASGVSEKKGRKIIDQAAAVEILQSWLDGRANALRS 161
>gi|257440576|ref|ZP_05616331.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii
A2-165]
gi|257196899|gb|EEU95183.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii
A2-165]
Length = 143
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D G R GLA+ DP P + K + A E+ + ++GLP
Sbjct: 2 KILAVDYGASRTGLAVCDPTEFLTTPITPQITLKARPKVAAEVCRIAQEQKAELIVVGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+EG R +R + +P WDER +T A IL ++ R +
Sbjct: 62 LNMDGTEGERAEKSRKLGKTL-QIWSGLPVRMWDERQSTCEAADILDEVGTFGAHRKAIL 120
Query: 137 DSIAAALILQEVL 149
DS++A +IL++ L
Sbjct: 121 DSVSATVILEDYL 133
>gi|23465455|ref|NP_696058.1| endonuclease [Bifidobacterium longum NCC2705]
gi|322688961|ref|YP_004208695.1| endonuclease [Bifidobacterium longum subsp. infantis 157F]
gi|322690930|ref|YP_004220500.1| endonuclease [Bifidobacterium longum subsp. longum JCM 1217]
gi|23326107|gb|AAN24694.1| possible endonuclease [Bifidobacterium longum NCC2705]
gi|320455786|dbj|BAJ66408.1| putative endonuclease [Bifidobacterium longum subsp. longum JCM
1217]
gi|320460297|dbj|BAJ70917.1| putative endonuclease [Bifidobacterium longum subsp. infantis 157F]
Length = 145
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
G R+GLA+SDP FAHP + E+L+ I E++ I+GLPL M+G+E
Sbjct: 2 GNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGTE 61
Query: 84 GPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMNVSRKK 131
G R + N+ R + +P DERLTTVSA + L + + + K
Sbjct: 62 GKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASNK 121
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
VD +A +ILQ LDR
Sbjct: 122 HRPVVDQQSAVVILQTALDRTR 143
>gi|86142251|ref|ZP_01060761.1| Holliday junction resolvase-like protein [Leeuwenhoekiella
blandensis MED217]
gi|85831003|gb|EAQ49460.1| Holliday junction resolvase-like protein [Leeuwenhoekiella
blandensis MED217]
Length = 134
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D GTKR G+A++D + A + + L + EN+ ++G
Sbjct: 1 MGRILALDFGTKRTGIAVTDELQLIASGLTTV---NTKELLDFLKKYFAEENVELILLGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN F ++ ++ +P DER T+ A Q ++D + +K+R K
Sbjct: 58 PKRMNNEASHVEAEILKFRESL-EKITSIPIKRVDERFTSKMAAQTMLDSGLKKKQRKNK 116
Query: 136 --VDSIAAALILQEVL 149
+D I+A +ILQ L
Sbjct: 117 ALLDEISATIILQTYL 132
>gi|154508866|ref|ZP_02044508.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC
17982]
gi|153798500|gb|EDN80920.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC
17982]
Length = 162
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 57/141 (40%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+GT R+G++ DP P L R L + + + I+GLP ++
Sbjct: 9 IGVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVGLPRHL 68
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G EG R + + V DER+T+ A L + + +D +
Sbjct: 69 RGGEGISAKGARKYARRLKKLVPDVRVAMVDERMTSNQAHARLRASGIPEIEHRSVIDQV 128
Query: 140 AAALILQEVLDRISFLESSKG 160
AA +IL++ L+ + G
Sbjct: 129 AAQIILEQALELERMGGRAPG 149
>gi|320458617|dbj|BAJ69238.1| putative endonuclease [Bifidobacterium longum subsp. infantis ATCC
15697]
Length = 144
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
G R+GLA+SDP FAHP + E+L+ I E++ I+GLPL M+G+E
Sbjct: 2 GNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGTE 61
Query: 84 GPRVHSTRAFVHNMIDR-----------KVYVP-FVFWDERLTTVSAQQILIDMNVSRKK 131
G R + N+ R + +P DERLTTVSA + L + + + K
Sbjct: 62 GKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASNK 121
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
VD +A +ILQ LDR
Sbjct: 122 HRPVVDQQSAVVILQTALDRTR 143
>gi|296117816|ref|ZP_06836399.1| putative Holliday junction resolvase [Corynebacterium ammoniagenes
DSM 20306]
gi|295969047|gb|EFG82289.1| putative Holliday junction resolvase [Corynebacterium ammoniagenes
DSM 20306]
Length = 175
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 19/155 (12%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
+ +D+GT RIG+A+SD R A P + R+ +LL+ I+ I
Sbjct: 14 PGSGRRLGLDVGTVRIGVAVSDRDARLAMPVETVPRETGLKDSDKADIDKLLAIISEYAI 73
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-------------VFWDERLTT 115
++GLP ++ G+ V + + R++ PF DERLTT
Sbjct: 74 VEIVVGLPRDLQGNGSASVKHAKEIAFRL-KRRLNKPFAPDPTPPHPVPVVRMGDERLTT 132
Query: 116 VSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
V+A L VS KK +D AA ILQ LD
Sbjct: 133 VAATTALRASGVSEKKGRAVIDQAAAVEILQSWLD 167
>gi|85057698|ref|YP_456614.1| Holliday junction resolvase [Aster yellows witches'-broom
phytoplasma AYWB]
gi|146325552|sp|Q2NJ58|RUVX_AYWBP RecName: Full=Putative Holliday junction resolvase
gi|84789803|gb|ABC65535.1| Holliday junction resolvase [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 151
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG K +G+A+S A + K Q L I+ I I+G P
Sbjct: 10 LGLDLGEKTLGIALSQ-TGIIAQNLKTIFFDTHKYDQLIAPLQKIISQYQIKKIILGYPK 68
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+MN G + + F + ++ V + WDERL+TV A QIL N + K +Q D
Sbjct: 69 HMNNDIGIKAKISNYFKKTLENKFGQVKVILWDERLSTVQAIQILKTNNKKKGKILQMKD 128
Query: 138 SIAAALILQEVLDRISFLESSK 159
IAA++ILQ LD I + +
Sbjct: 129 EIAASIILQNYLDYIKLHPNKE 150
>gi|302344298|ref|YP_003808827.1| Holliday junction resolvase YqgF [Desulfarculus baarsii DSM 2075]
gi|301640911|gb|ADK86233.1| Holliday junction resolvase YqgF [Desulfarculus baarsii DSM 2075]
Length = 136
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G RIG+A+SD A P L R+ + + E ++GLPL+
Sbjct: 1 MALDVGRARIGVAVSDEAGLTAQPLCVLRRQGRDEDVRAIGRLAQREGARLIVLGLPLH- 59
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
N GP + + R++ +P F +E TT+ A + +++ ++SRK+R + VD +
Sbjct: 60 NDQIGPEAQRVISLGRRL-QRRLGLPVGFTNEEDTTIEAHEAMLEADLSRKRRAEVVDKV 118
Query: 140 AAALILQEVLDRIS 153
AAALIL+ LD +
Sbjct: 119 AAALILRRWLDGMR 132
>gi|317050665|ref|YP_004111781.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5]
gi|316945749|gb|ADU65225.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5]
Length = 152
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 3/137 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D+G++R+G+A+SD RR A L R+ Q + +I + ++G+
Sbjct: 1 MGRILALDIGSRRVGVAVSDSQRRMASTLKTLERQDYQQMLHRIGKYIEEYGVDLLVVGI 60
Query: 76 PLN-MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
PL+ +GS P+ A + +R VP + DER +T + LI ++SRKKR
Sbjct: 61 PLDSRDGSFTPKAMEIGAEARQLQER-FAVPVIGVDERFSTSKSNDFLIGVADLSRKKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+ VD++AA ILQ LD
Sbjct: 120 KVVDTMAAQNILQGYLD 136
>gi|152981739|ref|YP_001354639.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille]
gi|151281816|gb|ABR90226.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille]
Length = 131
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 11/142 (7%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G KRIG+A+ + + A P + + + A I+GL
Sbjct: 1 METVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVQQWQPALCIVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + +G E R F + + R V V DER ++ V +R +
Sbjct: 61 PRHPDGEEHEMTVRCRRFANQLHGR-FNVATVLVDERYSSA----------VISHQRGEL 109
Query: 136 VDSIAAALILQEVLDRISFLES 157
+D AAA+ILQ+ D + ES
Sbjct: 110 IDDQAAAIILQQYFDDYTQSES 131
>gi|297562015|ref|YP_003680989.1| Holliday junction resolvase YqgF [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296846463|gb|ADH68483.1| Holliday junction resolvase YqgF [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 161
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D G RIG+A SDP A P + R K + + ++G P ++
Sbjct: 7 LAVDPGNARIGVAASDPSGMLASPVETIRRGKG--DTQRIALLVLERQAREVVVGYPASL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-------R 132
+G EGP S R F + VP DERLTTV+AQ L+ K R
Sbjct: 65 SGEEGPAARSARDFARTLAALLHPVPVRLVDERLTTVTAQSQLLSGASFAAKGAKGGRAR 124
Query: 133 IQKVDSIAAALILQEVLDR 151
+D AA ++LQ LD+
Sbjct: 125 RSVIDQAAATVLLQSALDQ 143
>gi|83643445|ref|YP_431880.1| endonuclease [Hahella chejuensis KCTC 2396]
gi|146325575|sp|Q2SPG9|RUVX_HAHCH RecName: Full=Putative Holliday junction resolvase
gi|83631488|gb|ABC27455.1| predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Hahella chejuensis KCTC 2396]
Length = 158
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D G KR G A+ A P + + + + + A I+G
Sbjct: 1 MATVVGFDFGLKRFGAAVGQSVSMTASPLKEIPAQDGIPRWEAIEALLEEWKPALVIVGE 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GS R F + R + DERLT+ A+ ++ + R
Sbjct: 61 PLNMDGSVSEMALRARKFARRLHGR-YNLRVEMADERLTSSEAKSMVRERYGQRDFGRFA 119
Query: 136 VDSIAAALILQEVLD 150
VDSIAA I++ L+
Sbjct: 120 VDSIAAVFIVESWLE 134
>gi|319942918|ref|ZP_08017201.1| crossover junction endodeoxyribonuclease [Lautropia mirabilis ATCC
51599]
gi|319743460|gb|EFV95864.1| crossover junction endodeoxyribonuclease [Lautropia mirabilis ATCC
51599]
Length = 156
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
L + Q + + D G KRIG+A+ + A P L + + + +
Sbjct: 3 LSAATSTVQTLLAFDFGQKRIGVAVGNSLTGAARPLATLTEQTTDGRFARIQTLLKEWQP 62
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-- 126
++G PL+ +G+ F + + + +P DER ++V+AQ+ + D +
Sbjct: 63 TGLVVGRPLHPDGTPHEVTALAERFARRL-EGRFGLPVFLVDERYSSVAAQERMRDEDDE 121
Query: 127 -------VSRKKRIQKVDSIAAALILQEVL 149
+ Q D+ AAA+IL++ L
Sbjct: 122 HVTRGGRRRKGGASQGDDATAAAIILEQYL 151
>gi|152002513|dbj|BAF73537.1| predicted endonuclease [Onion yellows phytoplasma OY-W]
Length = 151
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 3/142 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG K +G+A+S A + K + L I+ I ++G P
Sbjct: 10 LGLDLGEKTLGIALSQ-TGIIAQNLKTIFFATHKYDRLITPLQEIISQYQIKTIVLGYPK 68
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+MN G + + F + ++ V + WDERL+TV A Q+L N + K +Q D
Sbjct: 69 HMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGKILQMKD 128
Query: 138 SIAAALILQEVLDRISFLESSK 159
IAA +ILQ LD I + +
Sbjct: 129 EIAATIILQNYLDYIKLHPNKE 150
>gi|88800503|ref|ZP_01116066.1| Holliday junction resolvase-like protein [Reinekea sp. MED297]
gi|88776734|gb|EAR07946.1| Holliday junction resolvase-like protein [Reinekea sp. MED297]
Length = 142
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
D G IG+A A + + ++ + F++G+P NM
Sbjct: 6 LGFDWGLGWIGVASGQTETYTASKLKPIRARDGIPNWTDIDQLVQEWRPTGFVVGIPYNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GSE V R F + + +P DERLTT A Q + + +K + +DS+
Sbjct: 66 DGSESQMVVRARKF-RKRLHGRFGLPAEEADERLTTREAWQHMNPASSLKKAKADDLDSV 124
Query: 140 AAALILQEVLDRIS 153
AA +ILQ L++
Sbjct: 125 AAQIILQSWLEQRR 138
>gi|171910330|ref|ZP_02925800.1| hypothetical protein VspiD_04140 [Verrucomicrobium spinosum DSM
4136]
Length = 151
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
ID GT RIGLA+SD AHP L + E+ + + + ++GLPL
Sbjct: 2 RTLGIDHGTVRIGLALSDELGLAAHPLKTLDTSPSVE--QEIAEIVRQKRVTTVVLGLPL 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQK 135
M+G G AF + + V F DERLT+V+A++ L ++ K++ +
Sbjct: 60 RMDGHRGEAATRVEAFADRLSKALRHEVTVKFVDERLTSVAAERSLGLEGKQKTKEQKKL 119
Query: 136 VDSIAAALILQEVLD 150
VD +AA ILQ+ L+
Sbjct: 120 VDQVAAVAILQDYLN 134
>gi|110004986|emb|CAK99317.1| putative holliday junction resolvase yqgf protein [Spiroplasma
citri]
Length = 139
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G+K +GLA S + Q A L ITTE + I+G P NM
Sbjct: 6 LAVDVGSKTLGLATSQGLIATGYGVYRFPENDFLQAAQYLAGLITTEQFSDIIVGYPKNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
N + GPR FV N++ + + + DERLTT A QI+++ N+SR+KR QK D
Sbjct: 66 NNTIGPRALMVSDFV-NLLKQLLDPTITIHLVDERLTTHQAHQIMLEANLSRQKRKQKKD 124
Query: 138 SIAAALILQEVL 149
S+AA LIL+ L
Sbjct: 125 SLAAQLILETYL 136
>gi|15609691|ref|NP_217070.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis H37Rv]
gi|15842092|ref|NP_337129.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis CDC1551]
gi|31793737|ref|NP_856230.1| Holliday junction resolvase-like protein [Mycobacterium bovis
AF2122/97]
gi|121638439|ref|YP_978663.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148662393|ref|YP_001283916.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis H37Ra]
gi|148823750|ref|YP_001288504.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis F11]
gi|167968835|ref|ZP_02551112.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis H37Ra]
gi|215404503|ref|ZP_03416684.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis 02_1987]
gi|215412328|ref|ZP_03421088.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis 94_M4241A]
gi|215427950|ref|ZP_03425869.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis T92]
gi|215431512|ref|ZP_03429431.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis EAS054]
gi|218754294|ref|ZP_03533090.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis GM 1503]
gi|219558558|ref|ZP_03537634.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis T17]
gi|224990933|ref|YP_002645620.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253798365|ref|YP_003031366.1| hypothetical protein TBMG_01418 [Mycobacterium tuberculosis KZN
1435]
gi|254232676|ref|ZP_04926003.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254366759|ref|ZP_04982802.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551606|ref|ZP_05142053.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260187568|ref|ZP_05765042.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis CPHL_A]
gi|260201681|ref|ZP_05769172.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis T46]
gi|260205873|ref|ZP_05773364.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis K85]
gi|260205876|ref|ZP_05773367.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis K85]
gi|289444090|ref|ZP_06433834.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289448203|ref|ZP_06437947.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289553656|ref|ZP_06442866.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289570723|ref|ZP_06450950.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289575260|ref|ZP_06455487.1| Holliday junction resolvase [Mycobacterium tuberculosis K85]
gi|289575262|ref|ZP_06455489.1| predicted protein [Mycobacterium tuberculosis K85]
gi|289746346|ref|ZP_06505724.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289751173|ref|ZP_06510551.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289754672|ref|ZP_06514050.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289762724|ref|ZP_06522102.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|294994335|ref|ZP_06800026.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis 210]
gi|297635165|ref|ZP_06952945.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis KZN 4207]
gi|297732157|ref|ZP_06961275.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis KZN R506]
gi|298526027|ref|ZP_07013436.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306776828|ref|ZP_07415165.1| hypothetical protein TMAG_02358 [Mycobacterium tuberculosis
SUMu001]
gi|306785356|ref|ZP_07423678.1| hypothetical protein TMCG_01799 [Mycobacterium tuberculosis
SUMu003]
gi|306794036|ref|ZP_07432338.1| hypothetical protein TMEG_03230 [Mycobacterium tuberculosis
SUMu005]
gi|307085241|ref|ZP_07494354.1| hypothetical protein TMLG_02282 [Mycobacterium tuberculosis
SUMu012]
gi|313659491|ref|ZP_07816371.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis KZN V2475]
gi|54039585|sp|P67488|RUVX_MYCBO RecName: Full=Putative Holliday junction resolvase
gi|54042290|sp|P67487|RUVX_MYCTU RecName: Full=Putative Holliday junction resolvase
gi|167012735|sp|A1KLQ2|RUVX_MYCBP RecName: Full=Putative Holliday junction resolvase
gi|167012738|sp|A5U5Q4|RUVX_MYCTA RecName: Full=Putative Holliday junction resolvase
gi|254767520|sp|C1AF23|RUVX_MYCBT RecName: Full=Putative Holliday junction resolvase
gi|1781048|emb|CAB06184.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|13882373|gb|AAK46943.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|31619331|emb|CAD94769.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121494087|emb|CAL72565.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124601735|gb|EAY60745.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134152270|gb|EBA44315.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148506545|gb|ABQ74354.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis H37Ra]
gi|148722277|gb|ABR06902.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224774046|dbj|BAH26852.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253319868|gb|ACT24471.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289417009|gb|EFD14249.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289421161|gb|EFD18362.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289438288|gb|EFD20781.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289539691|gb|EFD44269.1| Holliday junction resolvase [Mycobacterium tuberculosis K85]
gi|289539693|gb|EFD44271.1| predicted protein [Mycobacterium tuberculosis K85]
gi|289544477|gb|EFD48125.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289686874|gb|EFD54362.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289691760|gb|EFD59189.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289695259|gb|EFD62688.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289710230|gb|EFD74246.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|298495821|gb|EFI31115.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308214755|gb|EFO74154.1| hypothetical protein TMAG_02358 [Mycobacterium tuberculosis
SUMu001]
gi|308329948|gb|EFP18799.1| hypothetical protein TMCG_01799 [Mycobacterium tuberculosis
SUMu003]
gi|308337593|gb|EFP26444.1| hypothetical protein TMEG_03230 [Mycobacterium tuberculosis
SUMu005]
gi|308365195|gb|EFP54046.1| hypothetical protein TMLG_02282 [Mycobacterium tuberculosis
SUMu012]
gi|323718827|gb|EGB27983.1| hypothetical protein TMMG_02565 [Mycobacterium tuberculosis
CDC1551A]
gi|326904169|gb|EGE51102.1| hypothetical protein TBPG_02063 [Mycobacterium tuberculosis W-148]
gi|328458135|gb|AEB03558.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length = 170
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 54/138 (39%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
ID+G RIG+A SDP A P + R + + L + I+
Sbjct: 19 PGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIV 78
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP + G + R P DERLTTVSAQ+ L V ++
Sbjct: 79 GLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQR 138
Query: 134 QKVDSIAAALILQEVLDR 151
+D AA ILQ LD
Sbjct: 139 AVIDQAAAVAILQSWLDE 156
>gi|313837753|gb|EFS75467.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL037PA2]
gi|314927366|gb|EFS91197.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL044PA1]
gi|314972690|gb|EFT16787.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL037PA3]
Length = 160
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + + L + I+GLP+ +
Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETV--QTANRPMQRLAEIVAEYEPVEVIMGLPVAL 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E R + + +P + DER+TT +A + L D + +++ +D
Sbjct: 74 NGTEQLAARDIRDAGRQLAEAISPIPVRWVDERMTTRTAARALHDAGRNARQQRGVIDQA 133
Query: 140 AAALILQEVLDRIS 153
AA IL++VL+++
Sbjct: 134 AAVAILEDVLEQVR 147
>gi|256829569|ref|YP_003158297.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM
4028]
gi|256578745|gb|ACU89881.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM
4028]
Length = 133
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 3/134 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ID G KRIGLA+ + A P L + + +L+S I +E + A ++GLPL
Sbjct: 2 KILGIDYGQKRIGLAM--ARQGMAFPFKTLDKSTRDKLFADLMSIIESEGVEAIVLGLPL 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+MNG E F ++ R+ +P +E LT+ A+Q L + V +K + +D
Sbjct: 60 DMNGDETLTTRQVLNFRDSLA-RRTELPIHLVNEALTSFDARQRLREAGVPERKHKEMLD 118
Query: 138 SIAAALILQEVLDR 151
+AA IL+ L+
Sbjct: 119 QMAAVCILETYLEN 132
>gi|300309806|ref|YP_003773898.1| Holliday junction resolvase [Herbaspirillum seropedicae SmR1]
gi|300072591|gb|ADJ61990.1| Holliday junction resolvase protein [Herbaspirillum seropedicae
SmR1]
Length = 128
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I + D G KRIG+A+ + G + A P + + I A ++GLPL
Sbjct: 3 TILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+E R F + + R V V DER ++ V + +R +++D
Sbjct: 63 HPDGAEHEMSVRCRRFANQLHGR-YGVEVVLVDERYSSA----------VIQHQRGEQID 111
Query: 138 SIAAALILQEVLD 150
AAA+ILQ+ D
Sbjct: 112 DQAAAIILQQYFD 124
>gi|312797107|ref|YP_004030029.1| hypothetical protein RBRH_01480 [Burkholderia rhizoxinica HKI 454]
gi|312168882|emb|CBW75885.1| Hypothetical cytosolic protein [Burkholderia rhizoxinica HKI 454]
Length = 146
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 9/137 (6%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D G KRIG+AI + R A + + + I ++GLP+
Sbjct: 7 TLLAFDYGHKRIGVAIGNTLTRCARALTTVENRNREYRFAAVGELIGQWQPLRLVVGLPV 66
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ R F + + + + +P + DER ++V + R VD
Sbjct: 67 HPDGAPHEMTRQARRFGNQL-NGRFNLPVTWVDERYSSV--------AAEAAGARGAVVD 117
Query: 138 SIAAALILQEVLDRISF 154
+ AA +ILQ+ D S+
Sbjct: 118 AQAACIILQQYFDEQSY 134
>gi|119503502|ref|ZP_01625585.1| Holliday junction resolvase-like protein [marine gamma
proteobacterium HTCC2080]
gi|119460564|gb|EAW41656.1| Holliday junction resolvase-like protein [marine gamma
proteobacterium HTCC2080]
Length = 132
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 4/130 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D G KRIG+A+ + P L + + ++G PLNM
Sbjct: 1 MAFDWGLKRIGVAVGNTLLATCEPLCVLNARDGVPNWAAIAELFKEWQPEQLVVGDPLNM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ S R F + + + +P DERLT+ A+ L + + VD+
Sbjct: 61 DDSVAEITRRARRFSRQL-EGRFNLPVSLTDERLTSREARIQLEEQGLPYH---GAVDAH 116
Query: 140 AAALILQEVL 149
AA LILQ L
Sbjct: 117 AAQLILQSWL 126
>gi|317503056|ref|ZP_07961135.1| putative Holliday junction resolvase [Prevotella salivae DSM 15606]
gi|315665829|gb|EFV05417.1| putative Holliday junction resolvase [Prevotella salivae DSM 15606]
Length = 146
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I SID G KR GLA++D + A+ + + L +I E + +IG
Sbjct: 1 MARILSIDYGKKRTGLAVTDSLQIIANGLATV---STSILIDFLKDYIAKETVELIVIGR 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKR 132
P+ +G+ + FV+ VP ++DER T+V A ++++D + R++R
Sbjct: 58 PVKPDGTPSENLARVEQFVNRWRKLMPKVPIEYYDERFTSVIAHKVVLDSGIKKKARRER 117
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
VD I+A +ILQ+ + +
Sbjct: 118 KGLVDEISATIILQDFMQYKRSM 140
>gi|269977320|ref|ZP_06184293.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1]
gi|269934623|gb|EEZ91184.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1]
Length = 153
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 66/135 (48%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + +D+G R+G+A + A P L + EL SFI E A +GL
Sbjct: 3 SGRLIGVDVGKVRVGIAQAYLDTTLALPVKTLKVQADGSELEELASFIREETTTAVFVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +NG EG R++ + + +P DERL++V+A + L VS ++ +
Sbjct: 63 PRLLNGKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKM 122
Query: 136 VDSIAAALILQEVLD 150
VD +AA IL++ ++
Sbjct: 123 VDQVAAQQILEQAIE 137
>gi|118597207|sp|Q6NGZ8|RUVX_CORDI RecName: Full=Putative Holliday junction resolvase
Length = 171
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
+D+GT RIGLA+SD G R A P L R+ Q + I +I
Sbjct: 13 PGMGRRLGVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICDNHI 72
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILI 123
++GLP ++ G+ V + + R +V DERLTTV A Q L
Sbjct: 73 VEVVVGLPRDLKGNGSKSVKHAKDVAFRIRRRMHKNGWEHVAVKMADERLTTVVATQALR 132
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD-RISFLES 157
VS KK + VD AA ILQ LD RI+ LE+
Sbjct: 133 ASGVSEKKGRRVVDQAAAVEILQSWLDARINVLEN 167
>gi|187927716|ref|YP_001898203.1| Holliday junction resolvase-like protein [Ralstonia pickettii 12J]
gi|226731641|sp|B2U7A9|RUVX_RALPJ RecName: Full=Putative Holliday junction resolvase
gi|187724606|gb|ACD25771.1| Holliday junction resolvase YqgF [Ralstonia pickettii 12J]
Length = 143
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
S+ + + D G KRIG+A+ + R A + + V ++ +
Sbjct: 9 TASVPVEGTLLAFDYGEKRIGVALGNTVSRSARALETIPNRSVDFRFAQISRLVGEWQPV 68
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
F++G+P++ +G E P + + F + ++ R +P + DER ++++AQ D S
Sbjct: 69 GFVVGMPVHPDGEEQPMIKLAKRFGNQLLGR-YGLPVTWVDERYSSIAAQ----DAGAS- 122
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 123 ---DDVLDAEAARIILQQFFDE 141
>gi|119025719|ref|YP_909564.1| putative Holliday junction resolvase [Bifidobacterium adolescentis
ATCC 15703]
gi|154487460|ref|ZP_02028867.1| hypothetical protein BIFADO_01313 [Bifidobacterium adolescentis
L2-32]
gi|167012696|sp|A1A199|RUVX_BIFAA RecName: Full=Putative Holliday junction resolvase
gi|118765303|dbj|BAF39482.1| putative Holliday junction resolvase [Bifidobacterium adolescentis
ATCC 15703]
gi|154083978|gb|EDN83023.1| hypothetical protein BIFADO_01313 [Bifidobacterium adolescentis
L2-32]
Length = 151
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
IDLG R+GLA+SDP AHP + V + E++ I E++ +IGLPL
Sbjct: 4 LGIDLGDARVGLALSDPELTLAHPIGNIQVYGDSFRALDEVIDVIGDESVDHVVIGLPLL 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRK-----------VYVP-FVFWDERLTTVSAQQILIDMN 126
+NG EG R + N+ R VP DERLTTV+A L D
Sbjct: 64 LNGEEGKSAKKARRWSVNLEKRLHAAVEDESYSVTRVPTIELVDERLTTVTAHHQLFDAR 123
Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
+ +K VD +A +ILQ LDR
Sbjct: 124 IGGRKHRPMVDQQSAVVILQTALDR 148
>gi|39938790|ref|NP_950556.1| Hollyday junction resolvase [Onion yellows phytoplasma OY-M]
gi|62900989|sp|Q6YQR9|RUVX_ONYPE RecName: Full=Putative Holliday junction resolvase
gi|39721899|dbj|BAD04389.1| Hollyday junction resolvase [Onion yellows phytoplasma OY-M]
Length = 151
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG K +G+A+S A + K + L I I ++G P
Sbjct: 10 LGLDLGEKTLGIALSQ-TGIIAQNLKTIFFATHKYDRLIAPLQEIIFQYQIKTIVLGYPK 68
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+MN G + + F + ++ V + WDERL+TV A Q+L N + K +Q D
Sbjct: 69 HMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGKILQMKD 128
Query: 138 SIAAALILQEVLDRISFLESSK 159
IAA +ILQ LD I + +
Sbjct: 129 EIAATIILQNYLDYIKLHTNKE 150
>gi|329724707|gb|EGG61213.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
VCU144]
Length = 123
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L + +L+ I + +I
Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQDDLGIDQLVKIIKDNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESIPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122
>gi|262374013|ref|ZP_06067290.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262311024|gb|EEY92111.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 147
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++ +Q I + D GT+++G+AI A+P P + K +LL + F+
Sbjct: 4 IQTSQSIMAFDFGTQKMGIAIGQSAIESANPLPLFIMKDGIPDWNQLLKLVKEWQPNLFL 63
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+ SE R F + + + DERLTT A++ L + +
Sbjct: 64 VGLPLNMDDSESELSARARKFARRLRHQ-TNIQTWMVDERLTTREAREELESYQSKGQAK 122
Query: 133 IQKVDSIAAALILQEV 148
DS AAAL++Q
Sbjct: 123 RLSADSFAAALLIQSW 138
>gi|304389443|ref|ZP_07371406.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304327253|gb|EFL94488.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 152
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 68/141 (48%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID+G RIG+A S G A P L + ELL+ IT N AA +GLP M
Sbjct: 7 LAIDVGKARIGVARSVSGTSLALPVKTLQVQLDGSELDELLAIITDSNPAAVFVGLPKLM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G EG R++ ++ R +P DERL++ A L V +++ + VD +
Sbjct: 67 SGKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQAGVCARRQKEMVDQL 126
Query: 140 AAALILQEVLDRISFLESSKG 160
AA IL L+ ++ + G
Sbjct: 127 AAVTILTRALETLTQTGNLPG 147
>gi|299135876|ref|ZP_07029060.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX8]
gi|298602000|gb|EFI58154.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX8]
Length = 164
Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D+G +RIGLAI+DP A P L R + + FI + ++G PL
Sbjct: 6 RILALDVGDRRIGLAITDPLGLTAQPLFTLHRTSLRADLKSVARFIRQHKVTTVVVGNPL 65
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK------- 130
+ +GS P+ AF + + + DERLTT+ A +L S +
Sbjct: 66 HADGSPSPQAAKALAFAAAVREEHPTLAHHLLDERLTTLEAHALLDAAGHSARTAGRSHG 125
Query: 131 ---KRIQKVDSIAAALILQEVL 149
R +D +AA L+L+ L
Sbjct: 126 KTIDRKDLIDQVAATLLLESFL 147
>gi|89101195|ref|ZP_01174025.1| Holliday junction resolvase-like protein [Bacillus sp. NRRL
B-14911]
gi|89084081|gb|EAR63252.1| Holliday junction resolvase-like protein [Bacillus sp. NRRL
B-14911]
Length = 111
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 47 LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF 106
+ ++ +L I +++ ++GLP NMNG+ GPR +++ F + +R +P
Sbjct: 6 ISEEEKEFGFDQLGKIIKEYDVSTIVVGLPKNMNGTIGPRGEASQFFAGEL-ERLFGLPV 64
Query: 107 VFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
V WDERLTT++A+++L++ +VSRKKR + +D +AA++ILQ LD
Sbjct: 65 VLWDERLTTMAAERVLLEADVSRKKRKKVIDKMAASMILQGYLDSRK 111
>gi|169629934|ref|YP_001703583.1| putative Holliday junction resolvase [Mycobacterium abscessus ATCC
19977]
gi|226731629|sp|B1MCF8|RUVX_MYCA9 RecName: Full=Putative Holliday junction resolvase
gi|169241901|emb|CAM62929.1| Putative Holliday junction resolvase [Mycobacterium abscessus]
Length = 166
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 1/141 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFI 72
+D+GT RIG++ SDP A P + R K + + ++ +
Sbjct: 17 PGRGRRLGVDVGTVRIGISSSDPDGILATPVETVSRDAKEDSDFRRIAELVEEMSVVEVV 76
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP N+ G F + +R VP DER TT +AQ+ L + V +++
Sbjct: 77 VGLPRNLREGTGSSARDAAGFARELGERIAPVPVRLVDERFTTTTAQRSLREAGVRSRQQ 136
Query: 133 IQKVDSIAAALILQEVLDRIS 153
+D AA ILQ+ L++
Sbjct: 137 RGIIDQAAAVAILQDWLEQRR 157
>gi|269123199|ref|YP_003305776.1| Holliday junction resolvase YqgF [Streptobacillus moniliformis DSM
12112]
gi|268314525|gb|ACZ00899.1| Holliday junction resolvase YqgF [Streptobacillus moniliformis DSM
12112]
Length = 142
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G RIG+A SD FA + R +T + I +E + A ++GLP
Sbjct: 5 LGLDIGDVRIGVAKSDGLAMFASSYEVIDR-NITDPFERIKEIINSEKVIALVLGLPKTK 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVD 137
+G +V FV + +P + DER TT A+ L + + K+R + VD
Sbjct: 64 DGQNSIQVEKIERFVSELKLFIPENLPIHYIDERYTTKEAEYYLKNFSKKNGKERRKVVD 123
Query: 138 SIAAALILQEVLDRIS 153
+AA +ILQ LD+
Sbjct: 124 MVAAQIILQNFLDKYR 139
>gi|91216550|ref|ZP_01253516.1| Holliday junction resolvase-like protein [Psychroflexus torquis
ATCC 700755]
gi|91185344|gb|EAS71721.1| Holliday junction resolvase-like protein [Psychroflexus torquis
ATCC 700755]
Length = 137
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D G KR G+AISD + A + + + Q EL I E++ ++G P
Sbjct: 4 KVIALDFGMKRTGIAISDEMKMIASGLRTVETRNLMQ---ELKKIIEEESVDTLVVGQPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135
+++G + F+ ++ + DER T+ A Q +ID + +K+R
Sbjct: 61 HIDGKPMQLEKNILYFIEDVQALFPSLVIKRIDERFTSKMAFQTMIDSGLKKKQRQNKGL 120
Query: 136 VDSIAAALILQEVLDRI 152
VD I+A +ILQ L I
Sbjct: 121 VDEISATIILQNYLQYI 137
>gi|187479481|ref|YP_787506.1| Holliday junction resolvase-like protein [Bordetella avium 197N]
gi|146325554|sp|Q2KUT2|RUVX_BORA1 RecName: Full=Putative Holliday junction resolvase
gi|115424068|emb|CAJ50621.1| putative holliday junction resolvase [Bordetella avium 197N]
Length = 131
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + A P + ++ + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGVAIGNTLTCHARPLEIIFSERRDERFGRIQALLEAWRPQRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L L +G + P R F + + R V DER +++ AQ+ L
Sbjct: 62 LALATDGGDQPATLRCRRFANQLHGR-FGVTVELVDERGSSMEAQEKLGSH--------A 112
Query: 135 KVDSIAAALILQEVLDRIS 153
D++AAA+ILQ LDR++
Sbjct: 113 PDDAMAAAIILQRYLDRLA 131
>gi|309780780|ref|ZP_07675521.1| Holliday junction resolvase [Ralstonia sp. 5_7_47FAA]
gi|308920462|gb|EFP66118.1| Holliday junction resolvase [Ralstonia sp. 5_7_47FAA]
Length = 143
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D G KRIG+A+ + R A + + V ++ + F++G+P
Sbjct: 16 GTLLAFDYGEKRIGVALGNSITRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMP 75
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
++ +G E P + + F + + R +P + DER ++++AQ D S +
Sbjct: 76 VHPDGEEQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAS----DDVL 126
Query: 137 DSIAAALILQEVLDR 151
D+ AA +ILQ+ D
Sbjct: 127 DAEAARIILQQFFDE 141
>gi|293192680|ref|ZP_06609634.1| putative Holliday junction resolvase [Actinomyces odontolyticus
F0309]
gi|292820187|gb|EFF79184.1| putative Holliday junction resolvase [Actinomyces odontolyticus
F0309]
Length = 162
Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 57/141 (40%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+GT R+G++ DP P L R L + + + I+GLP ++
Sbjct: 9 IGVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVGLPRHL 68
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G EG R + + V DER+T+ A L + + +D +
Sbjct: 69 RGGEGISAKGARKYARRIKKLVPDVRVAMVDERMTSNQAHARLRASGIPEIEHRSVIDQV 128
Query: 140 AAALILQEVLDRISFLESSKG 160
AA +IL++ L+ + G
Sbjct: 129 AAQIILEQALELERMGGRAPG 149
>gi|171743065|ref|ZP_02918872.1| hypothetical protein BIFDEN_02191 [Bifidobacterium dentium ATCC
27678]
gi|283455925|ref|YP_003360489.1| Holliday junction resolvase [Bifidobacterium dentium Bd1]
gi|171278679|gb|EDT46340.1| hypothetical protein BIFDEN_02191 [Bifidobacterium dentium ATCC
27678]
gi|283102559|gb|ADB09665.1| Holliday junction resolvase [Bifidobacterium dentium Bd1]
Length = 158
Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG R+GLA+SDP AHP + V + E++ I E++ ++GLPL
Sbjct: 4 LGVDLGDARVGLALSDPELTLAHPAGNIQVYGDSFRALDEVIDVIEDESVDHVVVGLPLL 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-----------VP-FVFWDERLTTVSAQQILIDMN 126
+NG G R + N+ R +P DERLTTV+A Q L D
Sbjct: 64 LNGEAGKSAKKARRWAANLEKRMQAAAQDESEPLNVIPTIELVDERLTTVTAHQQLFDAQ 123
Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
+ ++ VD +A +ILQ LDR
Sbjct: 124 IGGRRHRPMVDQQSAVVILQTALDR 148
>gi|332878326|ref|ZP_08446052.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683777|gb|EGJ56648.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 136
Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I SID GTKR GLA++DP + A + Q L + E + AF+IGLP
Sbjct: 2 RILSIDYGTKRTGLAVTDPLKLIASGLTTV---DTPQLLPFLEKYTAEEAVEAFVIGLPK 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
+N + + + + +R + +DER T+ A Q +ID + +K+R K
Sbjct: 59 RLNNEDSAVEADIQQLLTKLKERFPTIKIHRYDERFTSKIAFQTMIDSGLKKKQRQNKAL 118
Query: 136 VDSIAAALILQEVLD 150
+D I+A LILQ+ L+
Sbjct: 119 IDEISATLILQDFLN 133
>gi|152002556|dbj|BAF73580.1| predicted endonuclease [Onion yellows phytoplasma OY-W]
Length = 151
Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 3/142 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG K +G+A+S A + K + L I+ I ++G P
Sbjct: 10 LGLDLGEKTLGIALSQ-TGIIAQKLKTIFFATHKYDRLIAPLQEIISQYQIKTIVLGYPK 68
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+MN G + + F + ++ V + WDERL+TV A Q+L N + + +Q D
Sbjct: 69 HMNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGQILQMKD 128
Query: 138 SIAAALILQEVLDRISFLESSK 159
IAA +ILQ LD I + +
Sbjct: 129 EIAATIILQNYLDYIKLHPNKE 150
>gi|289547922|ref|YP_003472910.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484]
gi|289181539|gb|ADC88783.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484]
Length = 133
Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ID GTK +GLA+ D + A P + + + + ++ ++GLPL
Sbjct: 2 RVLCIDWGTKSLGLALGDTNLKLATPLKPIP--NRGKVLERIAELVKEYDVRLVVVGLPL 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+G EG R R+FV + V WDER TT A Q+L SRKK +
Sbjct: 60 TPSGREGQRASQVRSFVEELSALLPEHVGVELWDERYTTYEAVQLL--EGKSRKKVKELK 117
Query: 137 DSIAAALILQEVLDRI 152
DS++A +ILQE LD +
Sbjct: 118 DSVSALIILQEYLDSL 133
>gi|190571530|ref|YP_001975888.1| putative holliday junction resolvase [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
gi|190357802|emb|CAQ55258.1| putative holliday junction resolvase [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
Length = 155
Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ +KS+ ++ I +D+G K+IG+A SD + A R+ +++ L
Sbjct: 1 MLHRNPDEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLN 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +IGLP ++ E F + +I + V DE L+T A
Sbjct: 61 RVLKENEAGSMVIGLPFTIDEQETEWCKVIIQFANKIIKK-CKVHIYLQDESLSTSLATH 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
L +S K + D IAA +ILQ LD+I+ ++
Sbjct: 120 ALKITGISITKSKKIDDKIAACIILQRTLDKINAIK 155
>gi|170781161|ref|YP_001709493.1| Holliday junction resolvase-like protein [Clavibacter michiganensis
subsp. sepedonicus]
gi|189046091|sp|B0REK3|RUVX_CLAMS RecName: Full=Putative Holliday junction resolvase
gi|169155729|emb|CAQ00850.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 161
Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLPLN 78
++D+G RIGLA SDP A P + R + +L + ++GLPL
Sbjct: 7 LAVDVGKARIGLARSDPHGLIATPVETVPRDAAGSADVRRILEVAAEIDCTELVVGLPLA 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G F + D + DERL+TVSAQ L +K+ +D
Sbjct: 67 LSGRATASTDDAEGFARRLADA-TEIRVRLVDERLSTVSAQGALRASGRGSRKQKPVIDQ 125
Query: 139 IAAALILQEVLDRISFLESSKG 160
+AA +ILQ L+ S G
Sbjct: 126 VAAVIILQHALETERAAGSPPG 147
>gi|257126596|ref|YP_003164710.1| Holliday junction resolvase YqgF [Leptotrichia buccalis C-1013-b]
gi|257050535|gb|ACV39719.1| Holliday junction resolvase YqgF [Leptotrichia buccalis C-1013-b]
Length = 138
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G RIG+A DP A + R K T + + E ++G+
Sbjct: 1 MKKFIGLDVGDVRIGVAKCDPLGILATALEVIDRTK-TNPVERIKEILDDEGTKKVVVGM 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P +++G++ +V FV + + +F DER TT A+ L + + K+R +
Sbjct: 60 PKSLDGTKKRQVEKVEEFVEELKKSISNIQIIFVDERYTTTEAEHYLKNYSKKNGKERRK 119
Query: 135 KVDSIAAALILQEVLDRIS 153
VD +AA++ILQ+ LD +
Sbjct: 120 VVDMVAASIILQKYLDTLP 138
>gi|56476387|ref|YP_157976.1| Holliday junction resolvase-like protein [Aromatoleum aromaticum
EbN1]
gi|62900914|sp|Q5P6I6|RUVX_AZOSE RecName: Full=Putative Holliday junction resolvase
gi|56312430|emb|CAI07075.1| holliday junction resolvase [Aromatoleum aromaticum EbN1]
Length = 156
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G RIG+A+ + R A L + + + ++G+
Sbjct: 15 RGTLLAFDFGLARIGVAVGELETRRASALLTLHGEASAPRFAAIAKLLDEWRPVGLVVGM 74
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQ 134
P +++G+ R F + + R +P + DERL++ +A L + + R Q
Sbjct: 75 PSHLDGTPHEMTARCRRFANQLHGR-FGLPVLECDERLSSAAADAALAEAGTHDWRARKQ 133
Query: 135 KVDSIAAALILQEVLD 150
+D++AA +ILQ LD
Sbjct: 134 VLDAVAAQIILQHFLD 149
>gi|260891457|ref|ZP_05902720.1| putative Holliday junction resolvase [Leptotrichia hofstadii F0254]
gi|260858840|gb|EEX73340.1| putative Holliday junction resolvase [Leptotrichia hofstadii F0254]
Length = 138
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G RIG+A DP A + R K T + + E ++G+
Sbjct: 1 MKKFIGLDVGDVRIGVAKCDPLGILATALEVIDRTK-TNPVERIKEILDDEGTKKIVVGM 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P +++G++ +V FV + + +F DER TT A+ L + + K+R +
Sbjct: 60 PKSLDGTKKRQVEKVEEFVEELKKDIPNIQIIFVDERYTTTEAEHYLKNYSKKNGKERRK 119
Query: 135 KVDSIAAALILQEVLDRI 152
VD +AA++ILQ+ LD +
Sbjct: 120 VVDMVAASIILQKYLDTL 137
>gi|227488810|ref|ZP_03919126.1| YqgF family crossover junction endodeoxyribonuclease
[Corynebacterium glucuronolyticum ATCC 51867]
gi|227542193|ref|ZP_03972242.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Corynebacterium glucuronolyticum ATCC 51866]
gi|227091232|gb|EEI26544.1| YqgF family crossover junction endodeoxyribonuclease
[Corynebacterium glucuronolyticum ATCC 51867]
gi|227182022|gb|EEI62994.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Corynebacterium glucuronolyticum ATCC 51866]
Length = 189
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--------VTQTALELLSFITT 65
+ ++D+GT RIG+A SD R A P + R + ++ +
Sbjct: 16 PGDGRRLALDVGTVRIGIASSDRDARMAMPVETVPRSHKRVGSEIPDGEDIRRIMQIVRE 75
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQI 121
IIGLP ++ G+ V R + +P F DERLTTV A Q
Sbjct: 76 YEPVEVIIGLPRDLKGNGSASVVHARDIGQRLERVLAGAGQAIPVRFADERLTTVIATQA 135
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESSK 159
L ++ + + VD AA ILQ LD R S+L +S+
Sbjct: 136 LHASGLTERAGRKVVDQAAAVEILQTWLDARRSYLATSQ 174
>gi|218961790|ref|YP_001741565.1| putative Holliday junction resolvase [Candidatus Cloacamonas
acidaminovorans]
gi|167730447|emb|CAO81359.1| putative Holliday junction resolvase [Candidatus Cloacamonas
acidaminovorans]
Length = 138
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ I ++D G KRIG+A+SDP R F+ P L K Q EL IT + I
Sbjct: 1 MSSKGRILALDYGEKRIGIALSDPNRIFSKPLCVLSNKGFEQLVEELKKLITLHQVTLLI 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IG+P ++GS P+ + ++ + D + + +DER +T A + L M + ++
Sbjct: 61 IGIPYAIDGSITPKTEECQQILNRLKD-VLSISVEGFDERYSTWEANEELKKMGYNWRQA 119
Query: 133 IQKVDSIAAALILQEVLDR 151
+ D+++AA+IL+E L++
Sbjct: 120 KEIKDAMSAAMILKEFLNQ 138
>gi|283788529|ref|YP_003368394.1| holliday junction resolvase [Citrobacter rodentium ICC168]
gi|282951983|emb|CBG91710.1| putative holliday junction resolvase [Citrobacter rodentium ICC168]
Length = 122
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 32 AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
AI A + + T + + I+GLPLNM+G+E P R
Sbjct: 2 AIGQRITGSARALAAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMDGTEQPLTARAR 61
Query: 92 AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
F N I + V DERL+TV A+ L + R K+DS +A +IL+ ++
Sbjct: 62 KFA-NRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGKIDSASAVIILESYFEQ 120
>gi|119358338|ref|YP_912982.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides DSM
266]
gi|119355687|gb|ABL66558.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides DSM
266]
Length = 142
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L + I +ID GTKRIGLA +DP + FA R + L I +
Sbjct: 3 LTEKKRILAIDYGTKRIGLAQTDPLQLFASAVGTFERTTLFAL---LEKMAANNEIEKIL 59
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G PL+ + S F+ + +P DE ++ A QILI +K R
Sbjct: 60 VGYPLSSDNSPNAMTAVVDRFIMELQLAFPSLPVETADEHHSSRDAHQILIASGTRKKAR 119
Query: 133 IQK--VDSIAAALILQEVLD 150
+K +DS AA +IL++ L+
Sbjct: 120 KEKGRIDSAAACVILRDYLE 139
>gi|306822870|ref|ZP_07456246.1| possible Holliday junction resolvase [Bifidobacterium dentium ATCC
27679]
gi|309801316|ref|ZP_07695445.1| RNAse H domain protein, YqgF family [Bifidobacterium dentium
JCVIHMP022]
gi|304553502|gb|EFM41413.1| possible Holliday junction resolvase [Bifidobacterium dentium ATCC
27679]
gi|308222205|gb|EFO78488.1| RNAse H domain protein, YqgF family [Bifidobacterium dentium
JCVIHMP022]
Length = 158
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG R+GLA+SDP AHP + V + E++ I E++ ++GLPL
Sbjct: 4 LGVDLGDARVGLALSDPELTLAHPAGNIQVYGDSFRALDEVIDVIEDESVDHVVVGLPLL 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-----------VP-FVFWDERLTTVSAQQILIDMN 126
+NG G R + N+ R +P DERLTTV+A Q L D
Sbjct: 64 LNGEAGKSAKKARRWAANLEKRMRAAAQDESEPLNVIPTIELVDERLTTVTAHQQLFDAQ 123
Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
+ ++ VD +A +ILQ LDR
Sbjct: 124 IGGRRHRPMVDQQSAVVILQTALDR 148
>gi|303232788|ref|ZP_07319473.1| RNAse H domain protein, YqgF family [Atopobium vaginae PB189-T1-4]
gi|302481274|gb|EFL44349.1| RNAse H domain protein, YqgF family [Atopobium vaginae PB189-T1-4]
Length = 137
Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D+G R+G+A+SD A P L ++V A + + GLP
Sbjct: 2 RVVALDIGDVRVGIAVSDATGSVASPVKVLPFQEVYACAKTFRRILEDYEPELLVCGLPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+++G+ G + ++ +P F DERL++ A++IL K+ +D
Sbjct: 62 SLDGACGAQAEKITQQAQHIA-ACCNLPLAFVDERLSSSEAKRILRAQGYKEKQMRGHID 120
Query: 138 SIAAALILQEVLD 150
IAA+L LQ LD
Sbjct: 121 MIAASLFLQAYLD 133
>gi|78486169|ref|YP_392094.1| Holliday junction resolvase YqgF [Thiomicrospira crunogena XCL-2]
gi|146325621|sp|Q31EK3|RUVX_THICR RecName: Full=Putative Holliday junction resolvase
gi|78364455|gb|ABB42420.1| Holliday junction resolvase YqgF [Thiomicrospira crunogena XCL-2]
Length = 134
Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 8/139 (5%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ D G KRIG+AI R A P + K + +A ++
Sbjct: 4 PIEGVVIGFDFGLKRIGVAIGQTITRTATPEAIVASKDGKPDWEHISRLFEEWKPSAIVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+ +NG E R F + R P + +E+L+++ A+Q + K
Sbjct: 64 GLPMRLNGEEQALTQPARKFGQRLSGR-YQRPVYYIEEQLSSIEAEQ-------RKTKTD 115
Query: 134 QKVDSIAAALILQEVLDRI 152
Q +D AA +IL+ LD +
Sbjct: 116 QPMDDHAAQIILENWLDAL 134
>gi|254284129|ref|ZP_04959097.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
NOR51-B]
gi|219680332|gb|EED36681.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
NOR51-B]
Length = 143
Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G ++IG+AI + P + + ++ I ++G PL
Sbjct: 7 TVMGFDYGLRQIGVAIGNTLLGQGKPLAIVTARDGKPDWSQIERLIGEWQPDHLVVGKPL 66
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GS+ F + R P DERLT+ A+ D + +D
Sbjct: 67 NMDGSDSEMGARAAKFSRQLNGRFAK-PVDLVDERLTSREAKSQSRDRGHNGNYTTDPID 125
Query: 138 SIAAALILQEVLD 150
AAALIL +
Sbjct: 126 DEAAALILNTWFE 138
>gi|184200991|ref|YP_001855198.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201]
gi|183581221|dbj|BAG29692.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201]
Length = 165
Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 7/139 (5%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE---LLSFITTENIAAFIIGLP 76
+D+GT R+G+A++DP A P L R + A + + ++ +GLP
Sbjct: 11 MGVDVGTVRVGIALTDPDCVLATPHQTLTRDPNPRKAFDVKIITKLCEQRDVRTVYVGLP 70
Query: 77 LNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
++NG E R + + R DERL+TV+A + L+D VSR++
Sbjct: 71 RSLNGHENDSTRMARDYAAGLLRRLGSRGCTTEVRLVDERLSTVTAHRSLLDSGVSRREH 130
Query: 133 IQKVDSIAAALILQEVLDR 151
+ +VD AA LQ +D+
Sbjct: 131 MDRVDQAAAVTFLQTAVDQ 149
>gi|194334951|ref|YP_002016811.1| Holliday junction resolvase YqgF [Prosthecochloris aestuarii DSM
271]
gi|226731637|sp|B4S5W7|RUVX_PROA2 RecName: Full=Putative Holliday junction resolvase
gi|194312769|gb|ACF47164.1| Holliday junction resolvase YqgF [Prosthecochloris aestuarii DSM
271]
Length = 142
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ++D GTKRIGLA +DP + FA P + + + E+ + I +IG
Sbjct: 6 RKRIIAVDYGTKRIGLAKTDPLQLFAQPVGTFSEEALFRAIKEISGL---DGIGRILIGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
PLN +GS AF + + +P +E ++ SA QILI+ +SRKKR
Sbjct: 63 PLNADGSHNRMTDIVDAFAARVHNEFPDIPLELVNEHGSSRSAGQILINSGLSRKKRHEK 122
Query: 134 QKVDSIAAALILQEVLDR 151
++DS +A ++LQ LD+
Sbjct: 123 GRLDSASACVLLQAHLDK 140
>gi|332286753|ref|YP_004418664.1| holliday junction resolvase [Pusillimonas sp. T7-7]
gi|330430706|gb|AEC22040.1| holliday junction resolvase [Pusillimonas sp. T7-7]
Length = 137
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + + D GTK+IG+AI + R A P L Q + + ++G
Sbjct: 5 PDSTLLAFDYGTKKIGVAIGNTLTRQARPLDILFPVTREQRFSAIAKLLKDWQPDKVVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPL +GSE R F + + R V V DER +++ AQQ+L
Sbjct: 65 LPLATDGSEQYASLRCRRFANQLHGR-FGVETVLVDERGSSMEAQQML--------GNNT 115
Query: 135 KVDSIAAALILQEVLDRIS 153
D++AAA+ILQ LD ++
Sbjct: 116 DDDAVAAAIILQRYLDGLA 134
>gi|206900507|ref|YP_002250744.1| hypothetical protein DICTH_0881 [Dictyoglomus thermophilum H-6-12]
gi|226725513|sp|B5YDY6|RUVX_DICT6 RecName: Full=Putative Holliday junction resolvase
gi|206739610|gb|ACI18668.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
Length = 139
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +ID G K +GLAISDP R A K L + + ++G P+
Sbjct: 2 RVLAIDWGEKYVGLAISDPLRIIAQGLDVWEIKGEEDFVSRLKRLVEDYQVKEIVLGYPI 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
++ G E R R +I+ + +P F DERLTT+ A+++L++ ++ RKKR +
Sbjct: 62 SLRGHENERTQKVRHIAE-LIESVIGIPVKFVDERLTTMEAEKVLLEGDIKRKKRKLLKN 120
Query: 138 SIAAALILQEVLDRIS 153
AA +ILQ+ LD S
Sbjct: 121 KQAAVIILQKYLDSSS 136
>gi|257471598|ref|ZP_05635597.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
LSR1 (Acyrthosiphon pisum)]
gi|311086269|gb|ADP66351.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
LL01 (Acyrthosiphon pisum)]
gi|311086844|gb|ADP66925.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|311087924|gb|ADP68003.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
Length = 146
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G K+IG+A+ + + P L + + + I ++GLPLN
Sbjct: 14 VIAFDFGIKKIGVAVGENITKKGRPLSVLNAQNGCPNWQLVKNLIQYWQPQFIVVGLPLN 73
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+NG++ + + F N++ K + DERLTTV A+ I+ N + + +K+ S
Sbjct: 74 INGTKQKITNKSEKFA-NLLKYKFNIVVKMHDERLTTVEAKSIIFKKNGFKGLKEEKIHS 132
Query: 139 IAAALILQEVLDR 151
AA +IL+ ++
Sbjct: 133 CAAVIILESWFNQ 145
>gi|15617141|ref|NP_240354.1| hypothetical protein BU548 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681893|ref|YP_002468279.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|219682448|ref|YP_002468832.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|11387309|sp|P57613|RUVX_BUCAI RecName: Full=Putative Holliday junction resolvase
gi|254767500|sp|B8D9X0|RUVX_BUCA5 RecName: Full=Putative Holliday junction resolvase
gi|254767501|sp|B8D872|RUVX_BUCAT RecName: Full=Putative Holliday junction resolvase
gi|25306219|pir||H84993 hypothetical protein [imported] - Buchnera sp. (strain APS)
gi|10039206|dbj|BAB13240.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219622181|gb|ACL30337.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|219624736|gb|ACL30891.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|311087433|gb|ADP67513.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
Length = 135
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G K+IG+A+ + + P L + + + I ++GLPLN
Sbjct: 3 VIAFDFGIKKIGVAVGENITKKGRPLSVLNAQNGCPNWQLVKNLIQYWQPQFIVVGLPLN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+NG++ + + F N++ K + DERLTTV A+ I+ N + + +K+ S
Sbjct: 63 INGTKQKITNKSEKFA-NLLKYKFNIVVKMHDERLTTVEAKSIIFKKNGFKGLKEEKIHS 121
Query: 139 IAAALILQEVLDR 151
AA +IL+ ++
Sbjct: 122 CAAVIILESWFNQ 134
>gi|58698540|ref|ZP_00373442.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225629964|ref|YP_002726755.1| putative holliday junction resolvase [Wolbachia sp. wRi]
gi|254767533|sp|C0R5C2|RUVX_WOLWR RecName: Full=Putative Holliday junction resolvase
gi|58534956|gb|EAL59053.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225591945|gb|ACN94964.1| putative holliday junction resolvase [Wolbachia sp. wRi]
Length = 155
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ +KS+ ++ I +D+G K+IG+A SD + A RK +++ L
Sbjct: 1 MLHRNPDEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKDLGYLH 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ +IG+PLN++ E + F + +I + V DE L+T A
Sbjct: 61 RIFKENEAGSMVIGIPLNIDEQETKWCKTIIQFANKIIKK-YKVNTYLQDESLSTSIATH 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
L +S K + D I+A +ILQ LD+I+ ++
Sbjct: 120 TLKITGISITKSKKIDDKISACIILQRTLDKINTIK 155
>gi|319442137|ref|ZP_07991293.1| Holliday junction resolvase-like protein [Corynebacterium variabile
DSM 44702]
Length = 178
Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 6/152 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-----LELLSFITTENI 68
+D+GT RIG+++SDP A P + K + +L I +
Sbjct: 22 PGRGRRLGLDVGTVRIGVSLSDPDGILATPLETVQADKTSGAWPGEEFDHVLELIAENFV 81
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP+++ + + + + +P DER++T++A + V+
Sbjct: 82 VEVVVGLPVSLRSHRTRSTRRAENYATRL-RKNLDIPVRLVDERMSTMAATNAMHASGVN 140
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+KK ++D AA ILQ LD + G
Sbjct: 141 QKKGRSRIDQAAAVHILQGWLDARKAFSARHG 172
>gi|269956482|ref|YP_003326271.1| Holliday junction resolvase YqgF [Xylanimonas cellulosilytica DSM
15894]
gi|269305163|gb|ACZ30713.1| Holliday junction resolvase YqgF [Xylanimonas cellulosilytica DSM
15894]
Length = 184
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 60/151 (39%), Gaps = 5/151 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENIA 69
P +D+G RIGLA SDP A P + R + + + A
Sbjct: 27 PRGARLGVDVGKARIGLAASDPDGLIATPVETVARVLDATGTDSADVRAIAEAVGERFAA 86
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
+GLP +++G EG RAF + VP DER++TV+A L
Sbjct: 87 VVYVGLPRHLSGKEGAATADARAFATRLALAVAPVPVRMVDERMSTVTATSQLRAAGKKS 146
Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160
K +D AA +ILQ LD + G
Sbjct: 147 KSHRPVIDQAAAVIILQSALDAERAAGTRAG 177
>gi|291009599|ref|ZP_06567572.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
2338]
Length = 158
Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFII 73
P + ID+G R+G+A+SDP A P L R + L+ + + ++
Sbjct: 12 PGRR-LGIDVGAVRVGVALSDPAPMLATPLVTLQRDVEGGGDLGRLVEIVAEHEVVEVVV 70
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G+P + G GP + ++ + +R VP V+ DERLTTV+A ++L V KK+
Sbjct: 71 GMPRTLAGRHGPAAEAAESYGTALAERIAPVPVVYSDERLTTVTASRMLSKRGVRGKKQR 130
Query: 134 QKVDSIAAALILQEVLDR 151
VD AA ILQ LD
Sbjct: 131 AVVDQAAAVEILQAWLDS 148
>gi|325068845|ref|ZP_08127518.1| Holliday junction resolvase YqgF [Actinomyces oris K20]
Length = 155
Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D+G RIG+A D + P L R + E + + I+GLP +M
Sbjct: 3 IAFDVGQARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVIVGLPKHM 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G RA+ ++ R V DERLTTVSA + L + + VD
Sbjct: 63 GGGSSSSTKDARAWARDLASRLPRRVCVRLVDERLTTVSAHRDLHAAGLKERSFRGIVDQ 122
Query: 139 IAAALILQEVL--DRISFLESSK 159
AA +IL++ + +R+S + + +
Sbjct: 123 AAAVVILEQAITTERMSGVPAGE 145
>gi|146296781|ref|YP_001180552.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|167012707|sp|A4XKC6|RUVX_CALS8 RecName: Full=Putative Holliday junction resolvase
gi|145410357|gb|ABP67361.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 138
Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G++RIG+AISDP + A P L +K + L I +IG P+
Sbjct: 2 RILCLDIGSRRIGVAISDPLKIAAQPFCVLDLQKEDLYSC-LDKIFNEHQIEKIVIGYPV 60
Query: 78 ---NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+ + ++ + +R+ V + WDER +T + ++IL + NVS +KR +
Sbjct: 61 SKFHPD-KATEKLQKIDEICSEL-ERRYKVGIIKWDERFSTKAVERILREENVSWQKRKK 118
Query: 135 KVDSIAAALILQEVLDRIS 153
VD +AA ILQ LD I+
Sbjct: 119 VVDKLAAVYILQGYLDFIN 137
>gi|292490363|ref|YP_003525802.1| Holliday junction resolvase YqgF [Nitrosococcus halophilus Nc4]
gi|291578958|gb|ADE13415.1| Holliday junction resolvase YqgF [Nitrosococcus halophilus Nc4]
Length = 147
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
D G ++IG+A+ A P L + + I I+GLPLNM+
Sbjct: 18 GFDFGMRQIGVAVGQEVTHSATPLTTLKARDGKPNWDLVTRLIEQWRPDLLIVGLPLNMD 77
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
SE + R F + + R + + DERL+T+ A++ L + S R ++D +A
Sbjct: 78 QSEQLLTQAARRFGNRLHGR-YGLAVEWVDERLSTIEARERLN-LKPSSLGRHPELDQVA 135
Query: 141 AALILQEVL 149
A ILQ L
Sbjct: 136 AQCILQTWL 144
>gi|239500946|ref|ZP_04660256.1| hypothetical protein AbauAB_01395 [Acinetobacter baumannii AB900]
Length = 146
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI A+P P V K +LL + FI+GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWNQLLKIVKEWQPDLFIVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + + DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFARRLRHQ-TNIETWMVDERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQEV 148
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQSW 137
>gi|225351925|ref|ZP_03742948.1| hypothetical protein BIFPSEUDO_03529 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157172|gb|EEG70511.1| hypothetical protein BIFPSEUDO_03529 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 157
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
IDLG R+GLA+SDPG AHP + V + E++ I E++ ++GLPL
Sbjct: 4 LGIDLGDARVGLALSDPGITLAHPAGNIQVYGDSFRALDEVVDVIEDESVDHVVVGLPLL 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRK-----------VYVP-FVFWDERLTTVSAQQILIDMN 126
++G EG R + N+ R VP DERLTTV+A L D
Sbjct: 64 LSGEEGKSAKKARRWTVNLEKRLRVAVDDENYALKEVPSIELVDERLTTVTAHHQLFDAQ 123
Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
V +K VD +A +ILQ +DR
Sbjct: 124 VGGRKHRPMVDQQSAVVILQTAIDR 148
>gi|169634567|ref|YP_001708303.1| putative Holliday junction resolvase [Acinetobacter baumannii SDF]
gi|169797422|ref|YP_001715215.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE]
gi|184156655|ref|YP_001844994.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ACICU]
gi|213155764|ref|YP_002317809.1| hypothetical protein AB57_0400 [Acinetobacter baumannii AB0057]
gi|215484860|ref|YP_002327099.1| Uncharacterized protein family (UPF0081) family protein
[Acinetobacter baumannii AB307-0294]
gi|260550507|ref|ZP_05824717.1| endonuclease [Acinetobacter sp. RUH2624]
gi|260556314|ref|ZP_05828533.1| endonuclease [Acinetobacter baumannii ATCC 19606]
gi|301345137|ref|ZP_07225878.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AB056]
gi|301510702|ref|ZP_07235939.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AB058]
gi|301594962|ref|ZP_07239970.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AB059]
gi|332854386|ref|ZP_08435338.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013150]
gi|332867601|ref|ZP_08437749.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013113]
gi|332873063|ref|ZP_08441020.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6014059]
gi|169150349|emb|CAM88246.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE]
gi|169153359|emb|CAP02476.1| putative Holliday junction resolvase [Acinetobacter baumannii]
gi|183208249|gb|ACC55647.1| predicted endonuclease [Acinetobacter baumannii ACICU]
gi|193076168|gb|ABO10783.2| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978]
gi|213054924|gb|ACJ39826.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
gi|213987005|gb|ACJ57304.1| Uncharacterized protein family (UPF0081) family protein
[Acinetobacter baumannii AB307-0294]
gi|260406422|gb|EEW99904.1| endonuclease [Acinetobacter sp. RUH2624]
gi|260410369|gb|EEX03668.1| endonuclease [Acinetobacter baumannii ATCC 19606]
gi|322506542|gb|ADX01996.1| endonuclease [Acinetobacter baumannii 1656-2]
gi|323516421|gb|ADX90802.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
TCDC-AB0715]
gi|332728062|gb|EGJ59453.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013150]
gi|332733875|gb|EGJ65021.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013113]
gi|332738575|gb|EGJ69445.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6014059]
Length = 146
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI A+P P V K +LL + FI+GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + + DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFARRLRHQ-TNIETWMVDERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQEV 148
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQSW 137
>gi|134095903|ref|YP_001100978.1| putative holliday junction resolvase [Herminiimonas arsenicoxydans]
gi|133739806|emb|CAL62857.1| Putative holliday junction resolvase [Herminiimonas arsenicoxydans]
Length = 131
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G KRIG+A+ + + A P + + +T A I+GL
Sbjct: 1 METVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVTQWQPALCIVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + +G+E R F + + R V V DER ++ V +R
Sbjct: 61 PRHPDGAEHEMTVRCRRFANQLHGR-FDVATVLVDERYSSA----------VISHQRGDL 109
Query: 136 VDSIAAALILQEVLD 150
+D AAA+ILQ+ D
Sbjct: 110 IDDQAAAIILQQYFD 124
>gi|239907946|ref|YP_002954687.1| putative holliday junction resolvase [Desulfovibrio magneticus
RS-1]
gi|239797812|dbj|BAH76801.1| putative holliday junction resolvase [Desulfovibrio magneticus
RS-1]
Length = 147
Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +ID G R+GLA+ PG A P + + LL+ I +N +IG
Sbjct: 1 MEKILAIDYGQARVGLAVCAPGSEIAFPHSTIAWETRDDLFARLLAVIEEQNPGRIVIGY 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P G EG R F + R+ VP + DE +T A + L + +S ++ + K
Sbjct: 61 PARAGGDEGLTGRQVRNFAARLA-RRTAVPLAYADEAHSTEEAAERLREAGLSGRELLAK 119
Query: 136 VDSIAAALILQEVL 149
VD++AAA+IL+ L
Sbjct: 120 VDAMAAAVILERYL 133
>gi|78187998|ref|YP_378336.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3]
gi|146325560|sp|Q3AUD8|RUVX_CHLCH RecName: Full=Putative Holliday junction resolvase
gi|78170197|gb|ABB27293.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3]
Length = 140
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ Q I +ID GTKRIG+A SDP FA P + R +++ L + + +
Sbjct: 1 MPLYQRIVAIDYGTKRIGVAKSDPLGMFAQPIGTVDRAGLSKL---LSPMVEAGEVQLVV 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G PLN +G + F+ ++ +P +E ++ SA Q+L+ SRK+R
Sbjct: 58 VGYPLNRHGEQTAMTEVIDRFIESLRLEFPALPIETINEHCSSKSAMQLLVASGTSRKER 117
Query: 133 --IQKVDSIAAALILQEVLDR 151
++D+ AA L+L + L++
Sbjct: 118 KTKGRLDTAAACLLLSDYLEQ 138
>gi|257055558|ref|YP_003133390.1| hypothetical protein Svir_15280 [Saccharomonospora viridis DSM
43017]
gi|256585430|gb|ACU96563.1| conserved hypothetical protein TIGR00250 [Saccharomonospora viridis
DSM 43017]
Length = 154
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFII 73
P + ++D+G+ R+G+A+SDP A P L R + EL + ++ I+
Sbjct: 6 PGRR-LAVDVGSVRVGVALSDPTPILASPLVTLSRDADTDKDLEELARLVAEHDVVEVIV 64
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP + G + + +R V DERL+TVSA ++L V +K+
Sbjct: 65 GLPRTLADRHGTAAAIAADYARRLAERISPVAVRLADERLSTVSASRMLSQRGVKGRKQR 124
Query: 134 QKVDSIAAALILQEVLD 150
VD AA LQ LD
Sbjct: 125 AVVDQAAAVEFLQAWLD 141
>gi|304313296|ref|YP_003812894.1| Putative holliday junction resolvase [gamma proteobacterium HdN1]
gi|301799029|emb|CBL47272.1| Putative holliday junction resolvase [gamma proteobacterium HdN1]
Length = 148
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
D GT IG+A+ A L + L++ I AFI+G+PL
Sbjct: 5 TFLGFDYGTTVIGVAVGQTVTGTASALALLPARDGVPDWLQVELLIQEWQPDAFIVGIPL 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--VSRKKR-IQ 134
NM+G+E R F + + R P+ DERL+T A Q L + R R Q
Sbjct: 65 NMDGTETILAPRARKFGNRLTGRFRK-PWFPVDERLSTREAWQALESQHQLHKRALRGNQ 123
Query: 135 KVDSIAAALILQEVLDR 151
+VD++AAALIL L+
Sbjct: 124 RVDAVAAALILGSWLES 140
>gi|317124716|ref|YP_004098828.1| Holliday junction resolvase YqgF [Intrasporangium calvum DSM 43043]
gi|315588804|gb|ADU48101.1| Holliday junction resolvase YqgF [Intrasporangium calvum DSM 43043]
Length = 165
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
ID+G R+G+A SDP FA+P L R + + ++ ++GLP
Sbjct: 9 LGIDVGDARVGVAASDPSGTFANPVQTLARDVRELADIEAIAILTAERDVLEIVVGLPRL 68
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G EG RA+ + R VP DERLTTV A Q L D V + + VD
Sbjct: 69 LSGGEGEAARGARAYAAQLAARVAPVPVRLVDERLTTVGAHQRLRDSGVPGRGQRSVVDQ 128
Query: 139 IAAALILQEVLD 150
AA LILQ LD
Sbjct: 129 AAAVLILQSALD 140
>gi|262280744|ref|ZP_06058527.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262257644|gb|EEY76379.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|325124292|gb|ADY83815.1| putative Holliday junction resolvase [Acinetobacter calcoaceticus
PHEA-2]
Length = 146
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI A+P P V K +LL + F++GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + + + DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFARRLRHQ-TNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQEV 148
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQSW 137
>gi|298373387|ref|ZP_06983376.1| Holliday junction resolvase [Bacteroidetes oral taxon 274 str.
F0058]
gi|298274439|gb|EFI15991.1| Holliday junction resolvase [Bacteroidetes oral taxon 274 str.
F0058]
Length = 138
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR+G+A++DP A + ++ E ++T + +IG
Sbjct: 1 MARILAIDYGTKRVGVAVTDPLGMIAGALATVETPRIFDFLNE---YLTVNDCNRLVIGY 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
PL + F+ Y+ + +DER T+ A ++ + R+KR
Sbjct: 58 PLTLRNEPAEVTREIDRFIERFALLYPYIEVIKYDERFTSKLAFDTILASGIGRRKRRDK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D I+A +ILQ L+ IS
Sbjct: 118 AVIDRISATIILQNYLESIS 137
>gi|225164228|ref|ZP_03726502.1| Holliday junction resolvase YqgF [Opitutaceae bacterium TAV2]
gi|224801167|gb|EEG19489.1| Holliday junction resolvase YqgF [Opitutaceae bacterium TAV2]
Length = 144
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID GT+RIGLA D A P P L + L + + I ++G P NM
Sbjct: 4 LGIDYGTRRIGLAYGDELG-IATPIPALTDADPAKRRTALAAVVKQRRITDLVLGYPYNM 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + AF ++ + +P DERLT+ A+ + + + VDS
Sbjct: 63 DGSAGFKAKEVDAFAESL-RAEFALPVHLIDERLTSHMAESGMSQKKLREIRSQGIVDSR 121
Query: 140 AAALILQEVLDR 151
AAALILQ+ LD+
Sbjct: 122 AAALILQDFLDQ 133
>gi|299771798|ref|YP_003733824.1| Holliday junction resolvase-like protein [Acinetobacter sp. DR1]
gi|298701886|gb|ADI92451.1| Holliday junction resolvase-like protein [Acinetobacter sp. DR1]
Length = 146
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI A+P P V K +LL + F++GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPNLFLVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + + + DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFARRLRHQ-TNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQEV 148
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQSW 137
>gi|162447762|ref|YP_001620894.1| putative holliday junction resolvase [Acholeplasma laidlawii PG-8A]
gi|161985869|gb|ABX81518.1| predicted holliday junction resolvase [Acholeplasma laidlawii
PG-8A]
Length = 140
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG K +G+AIS A + + +LL + I ++GLP +
Sbjct: 5 GLDLGEKSLGVAIS-ESGIIASNLTTIRFKSEDYEDAVEQLLKLLNQYKIDCVVLGLPKH 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN G + F ++ K V + WDERL+T +A +IL D N K+ D
Sbjct: 64 MNNDIGLKGQMAIDF-KTLLASKSNVQVILWDERLSTKTALRILSDSNKKYDKQRNLKDE 122
Query: 139 IAAALILQEVLDR 151
+AA +ILQ L+
Sbjct: 123 VAAQVILQNYLNS 135
>gi|256832582|ref|YP_003161309.1| Holliday junction resolvase YqgF [Jonesia denitrificans DSM 20603]
gi|256686113|gb|ACV09006.1| Holliday junction resolvase YqgF [Jonesia denitrificans DSM 20603]
Length = 167
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 13/154 (8%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-------------TALELLSFITTE 66
+D+G R+G+A DP A P L R + +L
Sbjct: 10 LGVDVGQVRVGVAACDPDTILATPVETLARDRSVSYVAGGKVPSVLPTDIEDLREIAEER 69
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
A +GLP +++G+ G + + ++ DERLT+ +A L D
Sbjct: 70 LAVAVYVGLPKHLSGARGVSAEMAVNYASLVQRVLPHLEVRLVDERLTSKTAHSALHDAG 129
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
++ +D AA +IL L+ L S G
Sbjct: 130 RRAREHRTVIDQAAAVVILDTALEAEKRLGSWAG 163
>gi|237748807|ref|ZP_04579287.1| holliday junction resolvase [Oxalobacter formigenes OXCC13]
gi|229380169|gb|EEO30260.1| holliday junction resolvase [Oxalobacter formigenes OXCC13]
Length = 149
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D G KRIG AI + R A P + + ++ I I+GLP
Sbjct: 24 ILAFDFGLKRIGTAIGNELSRTARPLEIINAEANDIRFAKIGELIEEWQPVKLIVGLPSY 83
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+E + F + + R + + DER ++ V +R + D+
Sbjct: 84 PDGTEHEMTRRCKRFANQLRGR-FSLEIIMVDERYSSS----------VLHFQRGKADDA 132
Query: 139 IAAALILQEVLDR 151
AAALILQ+ D
Sbjct: 133 HAAALILQQYFDE 145
>gi|32490913|ref|NP_871167.1| hypothetical protein WGLp164 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|32130024|sp|Q8D337|RUVX_WIGBR RecName: Full=Putative Holliday junction resolvase
gi|25166119|dbj|BAC24310.1| yqgF [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 144
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ N + S D GTK IG+AI + P + K ++ + I I
Sbjct: 2 MYRNNLLISFDFGTKNIGVAIGQMKTNTSKPLESVSYVKGVPNWGKINNIILLWEPKYII 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+GS + F + ++ +P + DERLTT+ A+ +L + +
Sbjct: 62 VGLPLNMDGSYQTSTIKAKKFAKQLRNKFF-MPVMMHDERLTTIEAKSVLFKKYGYKGLK 120
Query: 133 IQKVDSIAAALILQEVLDRISF 154
+ +DS +A +IL ++ I F
Sbjct: 121 KKLIDSESAVIILDSWMNSIYF 142
>gi|46446457|ref|YP_007822.1| hypothetical protein pc0823 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400098|emb|CAF23547.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 134
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 8/131 (6%)
Query: 28 RIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFI------TTENIAAFIIGLPLNMN 80
RIGLA SD + A P + KK QT ++LL I I +IGLPL M+
Sbjct: 3 RIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKCEIEEIVIGLPLMMS 62
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G G + F ++ + +P WDERLTTV A++ L + ++RKKR + VD ++
Sbjct: 63 GRTGFLADEVKHFAQ-LLQQLTPIPIRLWDERLTTVQAERSLRESQLTRKKRSKVVDIVS 121
Query: 141 AALILQEVLDR 151
A++ILQ LD
Sbjct: 122 ASIILQSYLDS 132
>gi|332976666|gb|EGK13506.1| crossover junction endodeoxyribonuclease [Psychrobacter sp.
1501(2011)]
Length = 179
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 10 VKSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-TALELLSFITTEN 67
K+ P Q + +D G K++G+A+ + + A P LV LL I T
Sbjct: 20 TKNSSPEQTVLLGLDYGVKKMGMALGNTVTQDARPFDILVMNNGQPADWDNLLGIIDTWK 79
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILI 123
I ++GLPLNM+GS F + R +++VP +DERLT+V A+++
Sbjct: 80 IGRVVVGLPLNMDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAW 139
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVL 149
++ + + +R +D I+A L+LQ L
Sbjct: 140 ELGLIKNER-DPIDDISACLLLQSYL 164
>gi|294155488|ref|YP_003559872.1| putative Holliday junction resolvase [Mycoplasma crocodyli MP145]
gi|291600199|gb|ADE19695.1| putative Holliday junction resolvase [Mycoplasma crocodyli MP145]
Length = 139
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 3/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
++DLG++ G AISD A E+L ++ I I+G P
Sbjct: 4 LALDLGSRTCGFAISDELEVIAIGLDNFRFFEDDYEAVKNEVLRYMKEYKIDGIILGYPK 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+GS+ + F +++ + + +P ++ DE+ +T +A++ILI + ++R+KR D
Sbjct: 64 KNDGSKSDSTYRVENF-KDLLSKFIDIPIIYVDEQYSTKNAEKILIALGLTRQKRKNFKD 122
Query: 138 SIAAALILQEVLDRIS 153
+AA LIL++ L+
Sbjct: 123 KLAAQLILEDYLNYYR 138
>gi|262370094|ref|ZP_06063421.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262315133|gb|EEY96173.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 147
Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q I + D GT+++G+A+ A P K EL I F++GLP
Sbjct: 8 QMIMAFDFGTQKMGMAVGQALIESATPLALFPMKDGIPNWDELHKIIKQYQPNVFLVGLP 67
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+ SE R F + + + DERL+T +A+ L + + +
Sbjct: 68 LNMDDSESELSARARKFARRLRHQ-TNIETWMVDERLSTRAARDELSHYHAQGRGKKVSA 126
Query: 137 DSIAAALILQEV 148
DS+AA L ++
Sbjct: 127 DSLAATLFIESW 138
>gi|73667182|ref|YP_303198.1| hypothetical protein Ecaj_0565 [Ehrlichia canis str. Jake]
gi|146325572|sp|Q3YRQ5|RUVX_EHRCJ RecName: Full=Putative Holliday junction resolvase
gi|72394323|gb|AAZ68600.1| Conserved hypothetical protein 250 [Ehrlichia canis str. Jake]
Length = 156
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I++ VK + + I +D G K+IG+A+SD A P +++ + L
Sbjct: 1 MLYKSIDEFVKVIDKKKRIIGLDFGEKKIGIALSDKTNLVAIPYSVYIKRSTRKDLGSLY 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ N+ + +IG P+ ++G E + +I + + DER +T A +
Sbjct: 61 NIFVENNVGSMVIGWPIELSGIESELCQKVVLLANRIIAK-YKINIYLHDERYSTAMATR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ N+ RK+ D IAA LILQ+VLD
Sbjct: 120 VAKLANIKRKESQSIDDKIAAMLILQQVLD 149
>gi|163840720|ref|YP_001625125.1| hypothetical protein RSal33209_1978 [Renibacterium salmoninarum
ATCC 33209]
gi|162954196|gb|ABY23711.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
33209]
Length = 169
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
+D+GT R+G+A+ DP A P + R K ++ + +GLP
Sbjct: 13 LGVDVGTVRVGVAVCDPDGILATPLRAVQRDAKRNSDLRIIVKEALERDAITIYVGLPQT 72
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+ G+E RA + D V DERL++VSA Q L ++ +++ +
Sbjct: 73 LRGTESGSAELARAIAGQLADLLVQSDSAAEVRLIDERLSSVSAHQQLRSAGMAGREQRK 132
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D +AAA ILQ L+ +E S+G
Sbjct: 133 VIDQVAAAGILQHALE----MEKSRG 154
>gi|303326141|ref|ZP_07356584.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3]
gi|302864057|gb|EFL86988.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3]
Length = 142
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLP 76
ID G R GLA+SDP R A P L + L + IT E A ++GLP
Sbjct: 1 MGIDYGLARTGLAVSDPEGRLAFPLVTLRLEEYPNRKDFLAALAARITAEEAEAVVMGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L +G++ R + R+V +P + E L++ A L D ++ +KR +
Sbjct: 61 LLDDGTDSLTTRQVRNVTERL-KRRVDLPVFYMPELLSSEEAWSDLRDAGLTARKRKAVL 119
Query: 137 DSIAAALILQEVL 149
D AA IL L
Sbjct: 120 DQQAAVRILASFL 132
>gi|73540412|ref|YP_294932.1| Holliday junction resolvase-like protein [Ralstonia eutropha
JMP134]
gi|146325595|sp|Q474U5|RUVX_RALEJ RecName: Full=Putative Holliday junction resolvase
gi|72117825|gb|AAZ60088.1| Holliday junction resolvase YqgF [Ralstonia eutropha JMP134]
Length = 141
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ L + + + D G K+IG+A+ + R A L V + I
Sbjct: 7 RELPRDGTVLAFDYGEKKIGVALGNFVTRHATALTILPNVSVEGRFQAVGELIREWTPVQ 66
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++G+P+N G E P + R F + + + + +P + DER ++ A M
Sbjct: 67 LVVGMPVNPEGGEQPSMRLARRFGNQL-NGRYSLPVEWVDERYSSRMA-----AMGG--- 117
Query: 131 KRIQKVDSIAAALILQEVLDRIS 153
R ++D+ AA +ILQ+ D++
Sbjct: 118 ARRGELDAEAARIILQQYFDQLP 140
>gi|152988020|ref|YP_001345899.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
PA7]
gi|167012751|sp|A6UYL4|RUVX_PSEA7 RecName: Full=Putative Holliday junction resolvase
gi|150963178|gb|ABR85203.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 144
Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ + KP + + D GT++IG+A+ A L + + + I
Sbjct: 1 MAADKPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPD 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
A ++GLPLNM+GS F + + + +P DERLTT +A+ +
Sbjct: 61 AIVVGLPLNMDGSPSEMSERAEKFGRRL-NGRFNLPVFTHDERLTTYAAKGERLAQGQRD 119
Query: 130 KKRIQKVD 137
R + VD
Sbjct: 120 GYRERPVD 127
>gi|189502649|ref|YP_001958366.1| Holliday junction resolvase-like protein [Candidatus Amoebophilus
asiaticus 5a2]
gi|226725481|sp|B3ETT5|RUVX_AMOA5 RecName: Full=Putative Holliday junction resolvase
gi|189498090|gb|ACE06637.1| hypothetical protein Aasi_1327 [Candidatus Amoebophilus asiaticus
5a2]
Length = 141
Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR+GL+++DP + A P + T L +++ EN+ AF++G
Sbjct: 1 MGRIMAIDYGLKRVGLSVTDPLQIIASPLTTVAAND---TLTFLQTYVKKENVEAFVVGY 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P ++ P + + F+ + DER T+ A L++ +K R K
Sbjct: 58 PTDIKDKNTPIIVAISQFIELLQRNFPDQQIFQHDERYTSKLAAASLVEGGFKKKDRRNK 117
Query: 136 --VDSIAAALILQEVL 149
+D ++A +ILQ L
Sbjct: 118 ENLDKLSATIILQSFL 133
>gi|330941625|gb|EGH44406.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 129
Score = 133 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F + + + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAA 141
+IAA
Sbjct: 126 AIAA 129
>gi|114778470|ref|ZP_01453314.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1]
gi|114551195|gb|EAU53754.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1]
Length = 168
Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 4/141 (2%)
Query: 11 KSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
K L P+ P+ ++D+G KRIG+A+ D L+R+ +L +
Sbjct: 19 KDLPPDFALPLIALDIGMKRIGVAVCDRFGISCRGVTCLMRRDHGWP-QQLAKVVREYGA 77
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+ + GLP NM+G+EG + RA V + + + +P F DERL+T +A++ L +
Sbjct: 78 KSVVAGLPKNMDGTEGVQAADARAAVAEL-KKTLPLPVTFQDERLSTWTAKERLYAQGLR 136
Query: 129 RKKRIQKVDSIAAALILQEVL 149
KK +K+D AAA+IL++ L
Sbjct: 137 EKKVQEKLDQTAAAVILEDFL 157
>gi|212550493|ref|YP_002308810.1| Holliday junction resolvase-like protein [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|226725483|sp|B6YQC7|RUVX_AZOPC RecName: Full=Putative Holliday junction resolvase
gi|212548731|dbj|BAG83399.1| putative Holliday junction resolvase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 138
Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G AISDP + ++ +K + L + +I F++G
Sbjct: 1 MGRIVAIDYGEKRTGFAISDPLKMIVSSFVTVLSRK---AVMYLKNCTENYDIELFVLGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P M+ + + F N+ + DER T+V A +I+I+ V + KR
Sbjct: 58 PRQMDYTPSENMPRVEKFKRNLRRVIPSIDVQMVDERFTSVLAHRIMIEGGVKKIKRQDK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD ++AA++LQ L+ +
Sbjct: 118 GLVDRLSAAILLQTYLEFLR 137
>gi|25091669|sp|Q8K930|RUVX_BUCAP RecName: Full=Putative Holliday junction resolvase
gi|21623442|gb|AAM68071.1| hypothetical 15.2 kDa protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 137
Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G K IG+A+ + + L K + + + + ++GLPLN
Sbjct: 3 VIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G+ F ++ K + DERL+T A+ ++ N + + +K+ S
Sbjct: 63 IDGTRQDITKKAEKFA-FLLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHS 121
Query: 139 IAAALILQEVLDR 151
+AA +IL+ ++
Sbjct: 122 VAAVIILESWFNQ 134
>gi|15595601|ref|NP_249095.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
PAO1]
gi|107099390|ref|ZP_01363308.1| hypothetical protein PaerPA_01000402 [Pseudomonas aeruginosa PACS2]
gi|116054135|ref|YP_788578.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218889146|ref|YP_002438010.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
LESB58]
gi|254237361|ref|ZP_04930684.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254243504|ref|ZP_04936826.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|296386903|ref|ZP_06876402.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
PAb1]
gi|313111974|ref|ZP_07797762.1| putative ribonuclease [Pseudomonas aeruginosa 39016]
gi|32130066|sp|Q9I699|RUVX_PSEAE RecName: Full=Putative Holliday junction resolvase
gi|122261724|sp|Q02U08|RUVX_PSEAB RecName: Full=Putative Holliday junction resolvase
gi|226731640|sp|B7V3Z1|RUVX_PSEA8 RecName: Full=Putative Holliday junction resolvase
gi|9946258|gb|AAG03793.1|AE004477_10 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|115589356|gb|ABJ15371.1| putative ribonuclease [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169292|gb|EAZ54803.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126196882|gb|EAZ60945.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218769369|emb|CAW25129.1| putative ribonuclease [Pseudomonas aeruginosa LESB58]
gi|310884264|gb|EFQ42858.1| putative ribonuclease [Pseudomonas aeruginosa 39016]
Length = 144
Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ S KP + + D GT++IG+A+ A L + + + I
Sbjct: 1 MASDKPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPD 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
A ++GLPLNM+GS F + + + +P DERLTT +A+ +
Sbjct: 61 AIVVGLPLNMDGSPSEMSERAEKFGRRL-NGRFNLPVFTHDERLTTYAAKGERLAQGQRD 119
Query: 130 KKRIQKVD 137
R + VD
Sbjct: 120 GYRERPVD 127
>gi|194337777|ref|YP_002019571.1| Holliday junction resolvase YqgF [Pelodictyon phaeoclathratiforme
BU-1]
gi|194310254|gb|ACF44954.1| Holliday junction resolvase YqgF [Pelodictyon phaeoclathratiforme
BU-1]
Length = 145
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L P + + +ID GTKRIG+A SDP FA P R +++ L + I +++IA I
Sbjct: 3 LTPKKRVVAIDYGTKRIGMAQSDPLWLFAQPVGTFDRAGLSK---ALGTMIQSDDIALVI 59
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G PL+ NG + F+ + + + DE ++ A+ IL+ SRK R
Sbjct: 60 VGYPLSENGEKNAMTGVIDRFLETLHEEFPQLRIETLDEHHSSKDARSILVASGKSRKVR 119
Query: 133 --IQKVDSIAAALILQEVLDR 151
+VDS AA ++L+E L+
Sbjct: 120 QQKGRVDSAAACILLREYLEN 140
>gi|294783330|ref|ZP_06748654.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
1_1_41FAA]
gi|294480208|gb|EFG27985.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
1_1_41FAA]
Length = 138
Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKKV ++ + N + ++G+
Sbjct: 1 MKRYLALDIGDVRIGVARSDLMGIIATPLETINRKKV-KSVKRIAELCKENNTTSIVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL D+N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIEDLEIIEIDERFSTVIADNILKDLNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD 150
VD +AA++ILQ LD
Sbjct: 120 VVDKVAASIILQTYLD 135
>gi|237739615|ref|ZP_04570096.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
2_1_31]
gi|262066711|ref|ZP_06026323.1| putative Holliday junction resolvase [Fusobacterium periodonticum
ATCC 33693]
gi|229423223|gb|EEO38270.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
2_1_31]
gi|291379510|gb|EFE87028.1| putative Holliday junction resolvase [Fusobacterium periodonticum
ATCC 33693]
Length = 138
Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKKV ++ + N + ++G+
Sbjct: 1 MKRYLALDIGDVRIGVARSDLMGIIATPLETINRKKV-KSVKRIAELCKENNTTSIVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL D+N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEIDERFSTVIADNILKDLNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD 150
VD +AA++ILQ LD
Sbjct: 120 VVDKVAASIILQTYLD 135
>gi|308177508|ref|YP_003916914.1| Holliday junction resolvase [Arthrobacter arilaitensis Re117]
gi|307744971|emb|CBT75943.1| putative Holliday junction resolvase [Arthrobacter arilaitensis
Re117]
Length = 157
Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
+D+G R+G+A SDP A P L R K LL I + +G P +
Sbjct: 6 LGVDVGLARVGVAASDPSGILATPVMTLRRDVKKNSDRRMLLRIIADRGVTEVFVGEPKS 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRK----VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+ G+ R + + + + + DERL+TV+A + L + +
Sbjct: 66 LAGNSTESTKMARDYAIALAEEAASANIELEVFMVDERLSTVNAHRALHASGKKMEDHRK 125
Query: 135 KVDSIAAALILQEVLD 150
VD +AA ILQ+VL+
Sbjct: 126 VVDQVAATEILQQVLE 141
>gi|313115011|ref|ZP_07800503.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622665|gb|EFQ06128.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 191
Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D G R GLA D + K + A + +IGLP
Sbjct: 50 KILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIGAELIVIGLP 109
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+EG R +R ++ +P WDER TT +A IL + KR + +
Sbjct: 110 LNMDGTEGERAIKSRKLAKT-VEIWSGLPVRMWDERQTTCAAADILDESGTFGTKRKEIL 168
Query: 137 DSIAAALILQEVL 149
DS++A +IL + L
Sbjct: 169 DSVSATVILDDYL 181
>gi|220936072|ref|YP_002514971.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. HL-EbGR7]
gi|219997382|gb|ACL73984.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. HL-EbGR7]
Length = 163
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G +RIG+A+ P + + L ++ ++G PLN+
Sbjct: 21 LGLDYGGRRIGVAVGSRESGSGSPLGAVSNRDDGPDWAALDRWVREWRPDVLVVGQPLNL 80
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS----RKKRIQK 135
+G+ P + F + +R +P DER ++ A++ L + S RK +
Sbjct: 81 DGTPHPLAPRIQRFCEQLTERYT-LPVARVDERFSSFDAEERLREARASGRRGRKVQKGD 139
Query: 136 VDSIAAALILQEVL 149
+D+++AA++L
Sbjct: 140 IDALSAAILLDNWF 153
>gi|30410827|ref|NP_660860.2| hypothetical protein BUsg530 [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 148
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G K IG+A+ + + L K + + + + ++GLPLN
Sbjct: 14 VIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLN 73
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G+ F ++ K + DERL+T A+ ++ N + + +K+ S
Sbjct: 74 IDGTRQDITKKAEKFA-FLLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHS 132
Query: 139 IAAALILQEVLDR 151
+AA +IL+ ++
Sbjct: 133 VAAVIILESWFNQ 145
>gi|258653459|ref|YP_003202615.1| Holliday junction resolvase YqgF [Nakamurella multipartita DSM
44233]
gi|258556684|gb|ACV79626.1| Holliday junction resolvase YqgF [Nakamurella multipartita DSM
44233]
Length = 169
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 12/151 (7%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------------KVTQTALELLSFITTEN 67
+D+GT R+G+A SDP A P L R + T L + +
Sbjct: 19 LGVDVGTVRVGVARSDPAGILATPVTTLQRSAAPSSGKSGDRAEPTADLSALRDLVVEHD 78
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+ ++GLP + G EG V + RA+ + VP V+ DERLTTV+A ++L +
Sbjct: 79 VVEVVVGLPTTLRGMEGSAVTAARAYGQALAALIAPVPVVYVDERLTTVTADRVLAQAGI 138
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESS 158
K R VD +AA ILQ LD ++ S
Sbjct: 139 KGKARRAVVDQVAATRILQNRLDLLAAGRRS 169
>gi|262377004|ref|ZP_06070230.1| endonuclease [Acinetobacter lwoffii SH145]
gi|262308042|gb|EEY89179.1| endonuclease [Acinetobacter lwoffii SH145]
Length = 147
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q I + D GT+++G+++ A+P P K ELL + + F++GLP
Sbjct: 8 QTIMAFDFGTQKMGMSVGQSLIASANPLPLFPMKDGIPNWDELLKIVKSHQPNLFLVGLP 67
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+ SE R F + + + DERLTT A+ L + +
Sbjct: 68 LNMDDSESELSTRARKFARRLRHQ-TNIETWMVDERLTTREARDELDHYQAQGRGKKLSA 126
Query: 137 DSIAAALILQEV 148
DSIAAAL+++
Sbjct: 127 DSIAAALLIESW 138
>gi|226226072|ref|YP_002760178.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27]
gi|226089263|dbj|BAH37708.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27]
Length = 168
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-QTALELLSFITTENIAAFII 73
P + ++D G KRIGLA+SD A P + R+ E++ ++ +I
Sbjct: 4 PVGRLLAVDWGDKRIGLAVSDELGMLASPAGVIARRAGKRPPIAEIMRQAEALGVSGYIF 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ G E R R + R+ +P DER TT +A + + + S + R
Sbjct: 64 GLPLDPGGDETDRSREVREVAGKLATRQP-LPVRLVDERFTTSAALRSIREQGGSTRGRK 122
Query: 134 QKVDSIAAALILQEVL 149
VD++AA ++L+ VL
Sbjct: 123 GDVDALAACVLLEGVL 138
>gi|212703915|ref|ZP_03312043.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098]
gi|212672618|gb|EEB33101.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098]
Length = 145
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFIIGLP 76
ID G R GLA +DP A+P + + L I E A ++GLP
Sbjct: 4 VGIDYGLARTGLAATDPEGIMAYPLTTIRLADYANRKEFLAALAGRILEERPDAVVMGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L +G+E R + R+V +PF F E L++ +A++ L ++ + ++ +
Sbjct: 64 LLTDGTESMTTRQVRNVTERL-KRRVPLPFYFMSELLSSEAAERELREVGRTGRRCKAVL 122
Query: 137 DSIAAALILQEVL 149
D AA IL+ L
Sbjct: 123 DQQAAVRILESFL 135
>gi|207728127|ref|YP_002256521.1| putative holliday junction resolvase protein [Ralstonia
solanacearum MolK2]
gi|206591372|emb|CAQ56984.1| putative holliday junction resolvase protein [Ralstonia
solanacearum MolK2]
Length = 144
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ + + + D G KRIG+A+ + R A + + V ++ I
Sbjct: 10 APVPLHGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFSQITRLINEWQPVG 69
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
F++G+P++ G + P + + F + + R +P + DER ++++AQ D +
Sbjct: 70 FVVGMPVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT-- 122
Query: 131 KRIQKVDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 123 --DDVLDAEAARIILQQFFDE 141
>gi|224282911|ref|ZP_03646233.1| Putative endonuclease for recombination [Bifidobacterium bifidum
NCIMB 41171]
Length = 145
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
G R+GLA+SDP FAHP + + ++++ I E + ++GLPL ++G+E
Sbjct: 2 GDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQLDGTE 61
Query: 84 GPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILIDMNVSRKK 131
G R + N+ R + DERLTTVSA + L++ + ++
Sbjct: 62 GKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQLGSRR 121
Query: 132 RIQKVDSIAAALILQEVLD 150
VD +A +ILQ LD
Sbjct: 122 HRPVVDQQSAVVILQTALD 140
>gi|148651960|ref|YP_001279053.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1]
gi|172048441|sp|A5WBR2|RUVX_PSYWF RecName: Full=Putative Holliday junction resolvase
gi|148571044|gb|ABQ93103.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1]
Length = 177
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 7/145 (4%)
Query: 11 KSLKPNQPIA-SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-TALELLSFITTENI 68
+ +P Q + +D G K++G+A+ + + A P L LL I T I
Sbjct: 19 AAARPEQTVLLGLDYGVKKMGMALGNTVTQDARPFDILAMNNGQPADWDNLLGIIDTWRI 78
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILID 124
++GLPLNM+GS F + R +++VP +DERLT+V A+++ +
Sbjct: 79 GRVVVGLPLNMDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAWE 138
Query: 125 MNVSRKKRIQKVDSIAAALILQEVL 149
+ + + +R +D I+A L+LQ L
Sbjct: 139 LGLIKNER-DPIDDISACLLLQSYL 162
>gi|330815719|ref|YP_004359424.1| Holliday junction resolvase YqgF [Burkholderia gladioli BSR3]
gi|327368112|gb|AEA59468.1| Holliday junction resolvase YqgF [Burkholderia gladioli BSR3]
Length = 147
Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 4/143 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A + + + I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNTLTRTARALVIVSNLNREYRFEAVGALIAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + + + + +P + DER ++V A+ L I
Sbjct: 67 LPMHPDGTPHEMTQQAKRFGNQL-NGRFNLPVNWIDERYSSVEARAGLRARGAKADAAID 125
Query: 135 KVDSIAAALILQEVLDRISFLES 157
AA +ILQ LD++
Sbjct: 126 A---EAARVILQHYLDQLPDHHE 145
>gi|146284269|ref|YP_001174422.1| Holliday junction resolvase-like protein [Pseudomonas stutzeri
A1501]
gi|145572474|gb|ABP81580.1| predicted endonuclease involved in recombination [Pseudomonas
stutzeri A1501]
Length = 142
Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK+IG+A+ A L + ++ + + A ++GLPLN
Sbjct: 7 LLGFDYGTKQIGVAVGQVVTGQARELCVLKAQNGVPDWQQIEALLREWQPDALVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
M+GS F + + + +P DERLTT A+ + R + VD
Sbjct: 67 MDGSPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERLRQGQHGGYRERPVD 124
>gi|300692309|ref|YP_003753304.1| Holliday junction resolvase [Ralstonia solanacearum PSI07]
gi|299079369|emb|CBJ52041.1| Holliday junction resolvase [Ralstonia solanacearum PSI07]
Length = 144
Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
S+ + + + D G KRIG+A+ + R A + + V ++ ++
Sbjct: 9 TASVPLHGTLLAFDYGEKRIGVALGNSITRSARALEVISNRSVEYRFTQITRLVSEWQPV 68
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
F++G+P++ G + P + + F + + R +P + DER ++++AQ D +
Sbjct: 69 GFVVGMPVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT- 122
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 123 ---DDVLDAEAARIILQQFFDE 141
>gi|327482652|gb|AEA85962.1| Holliday junction resolvase-like protein [Pseudomonas stutzeri DSM
4166]
Length = 142
Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK+IG+A+ A L + ++ + + A ++GLPLN
Sbjct: 7 LLGFDYGTKQIGVAVGQVVTGQARELCVLKAQNGVPDWQQIEALLREWQPDALVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
M+GS F + + + +P DERLTT A+ + R + VD
Sbjct: 67 MDGSPSEMSARAEKFARRL-NGRFNLPVHTHDERLTTFEAKGERLRQGQHGGYRERPVD 124
>gi|257453530|ref|ZP_05618820.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
gi|257448988|gb|EEV23941.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
Length = 156
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + +D G ++G+A+ + + A P ELL I + ++ IIGLP
Sbjct: 12 ETVMGLDFGIAKMGIALGNTLTQTASPLMQFKMDNGKPNWDELLKIIESWQVSTIIIGLP 71
Query: 77 LNMNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
LNM+GS + + F + + P + DERLT+ A+ + + + +
Sbjct: 72 LNMDGSASELGNRAKKFARRLKHHLEEAHRPRPIILADERLTSREAKSLAWEYGLIKSD- 130
Query: 133 IQKVDSIAAALILQEVL 149
+ +DSIA+A++L L
Sbjct: 131 KEPIDSIASAIMLGSWL 147
>gi|308233743|ref|ZP_07664480.1| Holliday junction resolvase YqgF [Atopobium vaginae DSM 15829]
gi|328943733|ref|ZP_08241198.1| Holliday junction resolvase [Atopobium vaginae DSM 15829]
gi|327491702|gb|EGF23476.1| Holliday junction resolvase [Atopobium vaginae DSM 15829]
Length = 141
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D+G R+G+A+SD A P L ++V A + + GLP
Sbjct: 2 RVLALDIGEVRVGIAVSDASETLAMPVKVLPFQEVYTHARTFRRVLEDYEPDLLVCGLPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ G G + + R + F DERL++ A++IL + S K+ +D
Sbjct: 62 TLAGDVGAQAQKLMEQAQTIA-RACNLDVTFVDERLSSAQAKRILREQGYSEKQMRGHID 120
Query: 138 SIAAALILQEVLDRIS 153
IAA+L LQ LD
Sbjct: 121 MIAASLFLQAWLDERR 136
>gi|50083614|ref|YP_045124.1| Holliday junction resolvase-like protein [Acinetobacter sp. ADP1]
gi|62900972|sp|Q6FF55|RUVX_ACIAD RecName: Full=Putative Holliday junction resolvase
gi|49529590|emb|CAG67302.1| putative Holliday junction resolvase [Acinetobacter sp. ADP1]
Length = 147
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q I + D GT+++G+AI + P K +LL + F++GL
Sbjct: 7 HQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPTLFLVGL 66
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + + DERLTT A+ L + +
Sbjct: 67 PLNMDDSESELSARARKFARRLRHQ-TNITTWMVDERLTTREARDELESYQEQGRAKKIA 125
Query: 136 VDSIAAALILQEV 148
DSIAA+L++Q
Sbjct: 126 ADSIAASLLIQSW 138
>gi|293610120|ref|ZP_06692421.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827352|gb|EFF85716.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 146
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI +P P V K +LL + F++GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESTNPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + + + DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFARRLRHQ-TNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQEV 148
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQSW 137
>gi|328955591|ref|YP_004372924.1| Holliday junction resolvase YqgF [Coriobacterium glomerans PW2]
gi|328455915|gb|AEB07109.1| Holliday junction resolvase YqgF [Coriobacterium glomerans PW2]
Length = 140
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID+G R G+A+SD R A P L +V A + + G PL +
Sbjct: 4 LAIDIGEVRCGIAVSDATGRVALPVKVLPAIEVVSLARSFRDVLAEYEPEMLVCGSPLTL 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G GP+ RA I +P F DER+++ A++IL + + ++ K+D I
Sbjct: 64 AGELGPQAERIRAEAEA-IGSAADLPVAFVDERMSSREAKRILRERGCTEREMRGKLDMI 122
Query: 140 AAALILQEVLDRIS 153
AA+L LQ LDR +
Sbjct: 123 AASLFLQTWLDRRN 136
>gi|207744138|ref|YP_002260530.1| holliday junction resolvase protein [Ralstonia solanacearum
IPO1609]
gi|206595542|emb|CAQ62469.1| putative holliday junction resolvase protein [Ralstonia
solanacearum IPO1609]
Length = 144
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ + + D G KRIG+A+ + R A + + V ++ I
Sbjct: 10 APVPLQGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFSQITRLINEWQPVG 69
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
F++G+P++ G + P + + F + + R +P + DER ++++AQ D +
Sbjct: 70 FVVGMPVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT-- 122
Query: 131 KRIQKVDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 123 --DDVLDAEAARIILQQFFDE 141
>gi|113868870|ref|YP_727359.1| Holliday junction resolvase-like protein [Ralstonia eutropha H16]
gi|123328961|sp|Q0K7N0|RUVX_RALEH RecName: Full=Putative Holliday junction resolvase
gi|113527646|emb|CAJ93991.1| predicted endonuclease involved in recombination [Ralstonia
eutropha H16]
Length = 141
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ L + + + D G K+IG+A+ + R A L V + + I N
Sbjct: 7 RELPRDGTVLAFDYGEKKIGVALGNFITREARALTILPNITVEGRFEAVAALIQEWNPVQ 66
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
I+G+P+N G E P + R F + + + + +P + DER T+ +A
Sbjct: 67 LIVGMPVNPEGGEQPSMKLARRFGNQL-NGRFGLPVEWVDERYTSRAASMA--------G 117
Query: 131 KRIQKVDSIAAALILQEVLDR 151
R ++D+ AA +ILQ+ D+
Sbjct: 118 ARRGELDAEAARIILQQYFDQ 138
>gi|300775195|ref|ZP_07085057.1| Holliday junction resolvase family protein [Chryseobacterium gleum
ATCC 35910]
gi|300505935|gb|EFK37071.1| Holliday junction resolvase family protein [Chryseobacterium gleum
ATCC 35910]
Length = 138
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G R G+A +D + A + + + + L + + + +IGL
Sbjct: 1 MGQILAIDYGKARCGIAATDDMQIIASGLETVENRSLMEF---LKKYFSENKVDEVVIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+++ G+ F+ + +DER T+ A + ++KKR +K
Sbjct: 58 PIDLKGNISEVETDILKFIEEFKKEFSDIAVHRFDERFTSKMASFFISQSGKNKKKRQEK 117
Query: 136 --VDSIAAALILQEVLDR 151
+D ++A +ILQ L++
Sbjct: 118 GLIDKVSATIILQNFLEQ 135
>gi|119713535|gb|ABL97588.1| hypothetical protein MBMO_EB0-35D03.0051 [uncultured marine
bacterium EB0_35D03]
Length = 142
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGL 75
+ D+GTKR G+AI++ A + K + +L I FI+G+
Sbjct: 4 KTYLGFDVGTKRTGIAIANSLTSHASGIETILHNKDGSTNWAQLEKTINKHQPDKFIVGM 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL+ + E R+F + +++ +F DE L++ A++ L +
Sbjct: 64 PLDKDNKEQEMTFIARSFGRKL-EKRFDKEVIFIDEYLSSSEAKKQLKWHYAHKNADRGD 122
Query: 136 VDSIAAALILQEVLDRISF 154
VD +A LILQ L+ ++
Sbjct: 123 VDKRSAKLILQTWLNETTY 141
>gi|255319727|ref|ZP_05360935.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262379992|ref|ZP_06073147.1| endonuclease [Acinetobacter radioresistens SH164]
gi|255303256|gb|EET82465.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262298186|gb|EEY86100.1| endonuclease [Acinetobacter radioresistens SH164]
Length = 147
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GT+++G+AI + A+P K LL + F++GLPLN
Sbjct: 10 IMAFDFGTQKMGMAIGQAAIQSANPLTLFPMKDGIPNWEHLLKIVKEWQPDLFLVGLPLN 69
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+ SE R F + + + + DERLTT A+ L R DS
Sbjct: 70 MDESESELSARARKFARRLRHQ-TNIETLMVDERLTTREARSELSQYQAQGGNRKLAADS 128
Query: 139 IAAALILQEV 148
IAAAL+++
Sbjct: 129 IAAALLIESW 138
>gi|227875428|ref|ZP_03993569.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35243]
gi|227843982|gb|EEJ54150.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35243]
Length = 145
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 63/128 (49%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
D+G R+G+A + A P L + EL SFI E A +GLP +NG
Sbjct: 2 DVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGLPRLLNGK 61
Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
EG R++ + + +P DERL++V+A + L VS ++ + VD +AA
Sbjct: 62 EGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVAAQ 121
Query: 143 LILQEVLD 150
IL++ ++
Sbjct: 122 QILEQAIE 129
>gi|226942476|ref|YP_002797549.1| Holliday junction resolvase-like protein [Azotobacter vinelandii
DJ]
gi|259495698|sp|C1DI77|RUVX_AZOVD RecName: Full=Putative Holliday junction resolvase
gi|226717403|gb|ACO76574.1| Holliday junction resolvase-like protein [Azotobacter vinelandii
DJ]
Length = 142
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 1/119 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GT++IG+A+ A L + + + A ++GLPLN
Sbjct: 7 LLGFDYGTRQIGVAVGQAITGQARELCVLKAQNGVPDWSRVEQLVKEWRPDAMVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
M+G+ F + R +P DERLTT A+ + R + VD
Sbjct: 67 MDGTPSEMSERAERFARRLHGR-FGLPVHTHDERLTTFEAKGYRLAQGQRDGYRRRPVD 124
>gi|78187889|ref|YP_375932.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273]
gi|146325586|sp|Q3B192|RUVX_PELLD RecName: Full=Putative Holliday junction resolvase
gi|78167791|gb|ABB24889.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273]
Length = 141
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+KP I ID GTKRIGLA++DP + FA P + EL + + + +
Sbjct: 1 MKPKGRIVGIDYGTKRIGLAMTDPLQLFASPVGTF---EPGGLHHELRRIMQGDTVDLAV 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P+ +GS FV + + DE ++ A +IL SRK R
Sbjct: 58 VGSPVCDDGSGNAMTAVVDRFVEELRAAFPDLRVERVDESHSSREASRILAASGKSRKVR 117
Query: 133 IQK--VDSIAAALILQEVLDR 151
+K +DS AA ++L L+
Sbjct: 118 REKGRLDSAAACVLLTRFLEE 138
>gi|319778591|ref|YP_004129504.1| Putative Holliday junction resolvase [Taylorella equigenitalis
MCE9]
gi|317108615|gb|ADU91361.1| Putative Holliday junction resolvase [Taylorella equigenitalis
MCE9]
Length = 151
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I + D G K+IG+A+ + + A P + V + ++I N ++GLP+
Sbjct: 13 TILAFDYGKKKIGVALGNSITKSARPLGIIHNDTVDARFEGVANYINEWNPDLLVVGLPI 72
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ G E +R F + + R +P DER ++V AQ+I D
Sbjct: 73 TLGGQEQEASRLSRKFANQLHGR-FNLPVELIDERYSSVEAQEICH-CGPDE-------D 123
Query: 138 SIAAALILQEVL 149
AAA+IL+
Sbjct: 124 HYAAAVILERFF 135
>gi|300704910|ref|YP_003746513.1| holliday junction resolvase [Ralstonia solanacearum CFBP2957]
gi|299072574|emb|CBJ43924.1| Holliday junction resolvase [Ralstonia solanacearum CFBP2957]
Length = 144
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ + + + D G KRIG+A+ + R A + + V ++ I+
Sbjct: 10 APVPLHGTLLAFDYGEKRIGVALGNSITRSARALEIIPNRSVEYRFTQITRLISEWQPVG 69
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
F++G+P++ G + P + + F + + R +P + DER ++++AQ D +
Sbjct: 70 FVVGMPVHPEGEDQPMIKLAKRFGNQLRGR-YGLPVTWVDERYSSIAAQ----DAGAT-- 122
Query: 131 KRIQKVDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 123 --DDVLDAEAARIILQQFFDE 141
>gi|256825089|ref|YP_003149049.1| hypothetical protein Ksed_12520 [Kytococcus sedentarius DSM 20547]
gi|256688482|gb|ACV06284.1| conserved hypothetical protein TIGR00250 [Kytococcus sedentarius
DSM 20547]
Length = 161
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENIAAFIIGLPLNM 79
++D+G R+G+A DP A P + ++ + E ++GLP ++
Sbjct: 4 AVDVGLARVGVASGDPDGVLATPVETVAVAPGLTALDRVVQLVRQEERSTGVVVGLPRHL 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G E R + + R V DERL+TV+A + + + V K++ ++D
Sbjct: 64 DGHESTSAVEARRWATALASRLGPTVRVWLVDERLSTVAASRGMREAGVRAKEQRTRIDQ 123
Query: 139 IAAALILQEVLD 150
AA ILQ LD
Sbjct: 124 AAAVEILQMSLD 135
>gi|193216584|ref|YP_001999826.1| putative Holliday junction resolvase [Mycoplasma arthritidis
158L3-1]
gi|226731628|sp|B3PM70|RUVX_MYCA5 RecName: Full=Putative Holliday junction resolvase
gi|193001907|gb|ACF07122.1| putative Holliday junction resolvase [Mycoplasma arthritidis
158L3-1]
Length = 147
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 7/145 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTE----NIAAFII 73
+DLG K G AISD + A ++ + + ++ + I+
Sbjct: 4 LCLDLGKKTCGFAISDVNQTIAIGLENFFYEEYHFYEVINRIKYYLEESEFQGQVDEIIL 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL M+ SE + F + +P DER +T +A+ IL + K++
Sbjct: 64 GLPLRMDLSESKTTKMVKKFATVLAKNIT-LPIRLQDERQSTKNAEAILSQGGYNAKQKK 122
Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
K DS+AA LIL++ L+R +S+
Sbjct: 123 LKKDSLAAQLILEDYLERQHHEKSN 147
>gi|15672125|ref|NP_266299.1| hypothetical protein L141748 [Lactococcus lactis subsp. lactis
Il1403]
gi|12722992|gb|AAK04241.1|AE006252_3 hypothetical protein L141748 [Lactococcus lactis subsp. lactis
Il1403]
Length = 119
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 39 RFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96
A P + L I ++GLP +MNG EG R ++R +
Sbjct: 1 MTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLPKHMNGDEGIRAEASRDYGTK 60
Query: 97 MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + + + DERLTT A+++LID V RK+R + +D +AA LILQ LD
Sbjct: 61 LANE-FGLEVAYQDERLTTAQAEKVLIDGGVRRKERKKSIDKLAAVLILQNYLD 113
>gi|325955520|ref|YP_004239180.1| Holliday junction resolvase [Weeksella virosa DSM 16922]
gi|323438138|gb|ADX68602.1| Holliday junction resolvase [Weeksella virosa DSM 16922]
Length = 132
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D G KR G+A++D + A P L K++ + E ++ +IGLP+
Sbjct: 1 MALDFGEKRTGIAVTDELQIIATPVDTLETKELFNFFET---YFAKEKVSELVIGLPMKF 57
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQKVD 137
+G P + + F+ +P +E T+ A Q I + +K R +D
Sbjct: 58 SGEMNPIENEIQKFILKFKQSYPQIPIYRENEMFTSKMALQTQISGGMKKKDRQSKGSLD 117
Query: 138 SIAAALILQEVL 149
I+A +ILQ L
Sbjct: 118 KISATIILQSFL 129
>gi|293363867|ref|ZP_06610603.1| RNAse YqgF [Mycoplasma alligatoris A21JP2]
gi|292552357|gb|EFF41131.1| RNAse YqgF [Mycoplasma alligatoris A21JP2]
Length = 139
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
++DLG++ G AISD A EL + I I+G PL
Sbjct: 4 IALDLGSRTCGFAISDELGIIATGLDNFRFFEDNYQAVLNELTKYTKQYKIDTIILGYPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+GS+ +F MI+ + + V DE+ +T +A+ ILI + RKKR Q D
Sbjct: 64 KNDGSKSQSTLRVESF-KKMIEDNIDIKVVLVDEQYSTKNAENILIFSGMKRKKRKQFKD 122
Query: 138 SIAAALILQEVL 149
+AA LIL++ L
Sbjct: 123 KLAAQLILEDFL 134
>gi|283850501|ref|ZP_06367789.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B]
gi|283574072|gb|EFC22044.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B]
Length = 152
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +ID G R+GLA+SDP R A P + + ELL IT++ IAA ++G P
Sbjct: 3 KILAIDYGQARVGLAVSDPEGRMAFPFATVAWQTRDALFRELLDVITSQGIAAIVVGYPA 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
G E R FV + R+ +P V DE +T A + L + +S +VD
Sbjct: 63 RAGGDESLTGRQVRKFVARL-SRRTDLPIVLVDEAHSTEEAAEQLREAGLSGPALSARVD 121
Query: 138 SIAAALILQEVL 149
+ AAA+IL L
Sbjct: 122 AQAAAVILTRYL 133
>gi|295100354|emb|CBK97899.1| conserved hypothetical protein TIGR00250 [Faecalibacterium
prausnitzii L2-6]
Length = 143
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 5/144 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D G R GLA D P + K + A + +IGLP
Sbjct: 2 KILAVDYGDSRTGLATCDRTEFLTSPITPQITVKARDKVAARVCEVAKEIEAELIVIGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+EG R +R ++ +P WDER TT +A +L + KR +
Sbjct: 62 LNMDGTEGERARKSRKLAKT-VEIWSGLPVRMWDERQTTCAAADLLDESGTFGAKRKSIL 120
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
DS++A +IL + I + + G
Sbjct: 121 DSVSATVILDDY---IQWRKEHPG 141
>gi|237746673|ref|ZP_04577153.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS]
gi|229378024|gb|EEO28115.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS]
Length = 133
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D G KRIG AI + + A P + + + E+ I A ++GLP +
Sbjct: 8 ILAFDFGLKRIGCAIGNDLSKSARPLKIIRAEANDKRFAEIGELIVEWQPAKLVVGLPSH 67
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+E R F + + R + + DER T+ V K Q D+
Sbjct: 68 PDGTEHDMTRRCRRFANQLHGR-FALDTILVDERYTSS----------VLNFKPGQADDA 116
Query: 139 IAAALILQEVLDR 151
AAALILQ+ D
Sbjct: 117 HAAALILQQYFDE 129
>gi|34763054|ref|ZP_00144028.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|237741672|ref|ZP_04572153.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
4_1_13]
gi|256844996|ref|ZP_05550454.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_36A2]
gi|294785717|ref|ZP_06751005.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
3_1_27]
gi|27887280|gb|EAA24377.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|229429320|gb|EEO39532.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
4_1_13]
gi|256718555|gb|EEU32110.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_36A2]
gi|294487431|gb|EFG34793.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
3_1_27]
Length = 138
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKKV ++ + + ++G+
Sbjct: 1 MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLIVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL ++N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEIDERFSTVIADNILKELNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD 150
VD +AA++ILQ LD
Sbjct: 120 VVDKVAASIILQTYLD 135
>gi|220903317|ref|YP_002478629.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867616|gb|ACL47951.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 140
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFIIGLPLNM 79
D G R GLA+SDP R A P + + T L I A ++GLPL
Sbjct: 2 DYGLARTGLAVSDPDGRMAFPLATVRLQDYTDRKLFLAALAEKIIEAGAEAVVVGLPLTQ 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G E R + R++ +PF + E L++ A L + + +KR +D
Sbjct: 62 DGKESLTTRQVRNVTQRL-KRRIPLPFYYMVEELSSEEAWADLREAGLKMRKRKAVLDQQ 120
Query: 140 AAALILQEVL 149
AA IL L
Sbjct: 121 AAVRILSSFL 130
>gi|288817797|ref|YP_003432144.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6]
gi|288787196|dbj|BAI68943.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6]
gi|308751395|gb|ADO44878.1| Holliday junction resolvase YqgF [Hydrogenobacter thermophilus
TK-6]
Length = 133
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D G+KRIGLA+ D A P + ++ + I+ ++ I+GLPL
Sbjct: 2 KVLALDYGSKRIGLALGDTSLNIASPLGVF--ENREGVVEKIRNLISEYRVSLLIVGLPL 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
G +G R FV + + + + WDER TT A +L ++ KR +
Sbjct: 60 TPRGQKGQRAKEVEEFVKKLRESLPEEIELLMWDERYTTKEAYWLL--QDLPPTKRKKLK 117
Query: 137 DSIAAALILQEVLDRI 152
DS++A +IL+E L+ +
Sbjct: 118 DSLSAYIILKEYLESL 133
>gi|332521218|ref|ZP_08397676.1| Holliday junction resolvase YqgF [Lacinutrix algicola 5H-3-7-4]
gi|332043311|gb|EGI79508.1| Holliday junction resolvase YqgF [Lacinutrix algicola 5H-3-7-4]
Length = 136
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G R GLA++D + A + + L + T E++ F++G P
Sbjct: 4 ILAIDYGKVRTGLAVTDDMQIIASGLTTVATTTLLDF---LKDYTTKESVELFLVGEPKQ 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--V 136
MN F+ + ++P DER T+ A Q +ID + +K+R K V
Sbjct: 61 MNNQASESEALIAPFISRLRTFFPHIPIKRVDERFTSKMAVQTMIDSGLKKKQRQNKALV 120
Query: 137 DSIAAALILQEVL 149
D I+A +ILQ L
Sbjct: 121 DEISATIILQSYL 133
>gi|303246564|ref|ZP_07332842.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ]
gi|302491904|gb|EFL51782.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ]
Length = 147
Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +ID G R+GLA++DP R P L + ELL+ I+ + + ++G P+
Sbjct: 3 RLLAIDYGQARVGLAVTDPEARVVFPLRTLAWETRDALFHELLAVISDQAVTRIVVGYPM 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
G EG R FV + R+ VP DE +T A + L + + K+ + +VD
Sbjct: 63 RAGGDEGLTGRQVRNFVSRLT-RRTTVPVELVDEAHSTEEAAERLREAGYAGKELLARVD 121
Query: 138 SIAAALILQEVL 149
+ AAA+IL+ L
Sbjct: 122 AQAAAVILERYL 133
>gi|299067786|emb|CBJ38996.1| Holliday junction resolvase [Ralstonia solanacearum CMR15]
Length = 144
Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ + + + D G KRIG+A+ + R A + + V ++ +
Sbjct: 9 TAPVPVHGTLLAFDYGEKRIGVALGNSITRSARALEIIPNRSVEYRFTQITRLVNAWQPV 68
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
F++G+P++ G + P + + F + + R +P + DER ++++AQ D +
Sbjct: 69 GFVVGMPVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT- 122
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 123 ---DDVLDAEAARIILQQFFDE 141
>gi|194290484|ref|YP_002006391.1| holliday junction resolvase-like protein [Cupriavidus taiwanensis
LMG 19424]
gi|254767511|sp|B3R605|RUVX_CUPTR RecName: Full=Putative Holliday junction resolvase
gi|193224319|emb|CAQ70330.1| Holliday junction resolvase [Cupriavidus taiwanensis LMG 19424]
Length = 141
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ L + + + D G K+IG+A+ + R A L V + + I N
Sbjct: 7 RELPRDGTVLAFDYGEKKIGVALGNFITREARALTILPNITVEGRFEAVAALIQAWNPVQ 66
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
I+G+P+N G E P + R F + + + + +P + DER T+ +A
Sbjct: 67 LIVGMPVNPEGGEQPSMKLARRFGNQL-NGRFGLPVEWVDERYTSRAASMA--------G 117
Query: 131 KRIQKVDSIAAALILQEVLDR 151
R ++D+ AA +ILQ+ D+
Sbjct: 118 ARRGELDAEAARIILQQYFDQ 138
>gi|114319510|ref|YP_741193.1| Holliday junction resolvase YqgF [Alkalilimnicola ehrlichii MLHE-1]
gi|114225904|gb|ABI55703.1| Holliday junction resolvase YqgF [Alkalilimnicola ehrlichii MLHE-1]
Length = 144
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G +RIG+A+ + L + E+ + ++GL
Sbjct: 6 SGTWLAFDHGDRRIGVAVGEALTGGGRALITLSARAGQPDWEEVGRLLAEWRPQGVVVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL+ +GS+ + R F + R + DERL++ A L + +R
Sbjct: 66 PLHADGSDSESTRAARKFAQRLHGR-YGLRVELVDERLSSHEAAARLSERRGRPTRRPGA 124
Query: 136 VDSIAAALILQEVLDR 151
+DS AA +IL+ +
Sbjct: 125 LDSEAARVILETWFSQ 140
>gi|238026385|ref|YP_002910616.1| Holliday junction resolvase-like protein [Burkholderia glumae BGR1]
gi|237875579|gb|ACR27912.1| Holliday junction resolvase YqgF [Burkholderia glumae BGR1]
Length = 152
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 17/158 (10%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ S + + D G KRIG+A+ + R A + + I
Sbjct: 1 MSGSNAREATLLAFDYGEKRIGVAVGNTLTRTARALVIVANLNRDHRFKAIGELIAEWRP 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID---- 124
A ++GLPL+ +G+ R F + + + + +P + DER ++V A+ L +
Sbjct: 61 DALVVGLPLHPDGTPHEMTQQARRFGNQL-NGRFSLPVSWIDERYSSVEARAQLRERGAR 119
Query: 125 -----MNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+ +V ILQ LD++S
Sbjct: 120 GAARGAAAAVDAEAARV-------ILQTHLDQLSDHHE 150
>gi|296120376|ref|YP_003628154.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM
3776]
gi|296012716|gb|ADG65955.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM
3776]
Length = 199
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 30/168 (17%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
++ + +D G KR+GLAIS + A P RK + + +A
Sbjct: 21 QAFPREGCLLGVDYGQKRVGLAISTFEQTLAMPMEIYQRKSESVDREWFKATCLDYRVAG 80
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--- 127
++GLPL+ +G E R F + R +P FWDER T+VSA+ ++ V
Sbjct: 81 LVVGLPLHTSGEESELSREVRQFGEWLA-RCTNLPLRFWDERYTSVSAELLMWQDGVFPR 139
Query: 128 -----------------------SRKKRI---QKVDSIAAALILQEVL 149
+R K+ VD +AA +IL L
Sbjct: 140 SGNKPASGRTSKKSPGAGHSSPQNRAKKKTPVSPVDKLAAHMILTAFL 187
>gi|295106658|emb|CBL04201.1| conserved hypothetical protein TIGR00250 [Gordonibacter pamelaeae
7-10-1-b]
Length = 136
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D+G R+G+A+ DPG R A P L +V A + + GLP
Sbjct: 2 RIMALDIGETRVGVAVCDPGERVASPVCVLPAAEVLSCAKPFRRLLEDWEPELLLCGLPY 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ G EGP+ RA + + + +P F DERL++ A++ L + + ++ K+D
Sbjct: 62 TLAGQEGPQAARIRA-AADAVTKACGIPHEFADERLSSQEAKRSLREKGLGEREMRGKID 120
Query: 138 SIAAALILQEVLD 150
IAA+L LQ LD
Sbjct: 121 MIAASLFLQAWLD 133
>gi|160945990|ref|ZP_02093216.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii
M21/2]
gi|158443721|gb|EDP20726.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii
M21/2]
Length = 143
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D G R GLA D + K + A + +IGLP
Sbjct: 2 KILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIEAEMILIGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+EG R +R ++ +P WDER TT +A +L + +R + +
Sbjct: 62 LNMDGTEGERAAKSRKLAKT-VELWSGLPVRMWDERQTTCAAADLLDESGTYGSRRKEIL 120
Query: 137 DSIAAALILQEVL 149
DS++A +IL++ L
Sbjct: 121 DSVSATVILEDYL 133
>gi|110597280|ref|ZP_01385568.1| Holliday junction resolvase YqgF [Chlorobium ferrooxidans DSM
13031]
gi|110341116|gb|EAT59584.1| Holliday junction resolvase YqgF [Chlorobium ferrooxidans DSM
13031]
Length = 143
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + +ID GTKRIG+A SDP + FA P + R ++ L + ++ I IIG
Sbjct: 6 KKRVIAIDYGTKRIGVAKSDPLQLFAQPVGTVDRAGLSGM---LEEMLRSDEIGRVIIGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
PL NG F+ +++ + DE ++ A++IL SRK R
Sbjct: 63 PLGGNGETNAMTGVIDRFIEDLLVEFPQLMIERVDEHHSSKDARKILAASGKSRKVRQEK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
++DS AA ++L E L+ +
Sbjct: 123 GRIDSAAACVLLTEYLESRN 142
>gi|296535596|ref|ZP_06897777.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Roseomonas cervicalis ATCC 49957]
gi|296264112|gb|EFH10556.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Roseomonas cervicalis ATCC 49957]
Length = 159
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I+ + +L +L P+Q + +D G K IG+A++D A P L R K+ A E+
Sbjct: 1 MPIINLSELRAALSPDQRLIGLDPGKKIIGVALTDVTLMLASPYRGLARGKLAANAAEIG 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ E ++GLPL ++GS GP + + + + + +P WDERL++ + +
Sbjct: 61 AIARREGAGGLVVGLPLGLDGSFGPAAQAAKDWTRALSEA-TGLPAALWDERLSSSAVNR 119
Query: 121 ILI-DMNVSR 129
+LI + +++R
Sbjct: 120 MLIQEADLTR 129
>gi|323359965|ref|YP_004226361.1| endonuclease [Microbacterium testaceum StLB037]
gi|323276336|dbj|BAJ76481.1| predicted endonuclease [Microbacterium testaceum StLB037]
Length = 157
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID+G R+G+A SDP A P + RK + +++ ++GLPLN+
Sbjct: 10 LGIDVGRARVGVARSDPDGVLAVPVETVPRK--GEPVRRIVALAAEYEAFEVLVGLPLNL 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G + RA + + P DERL+TVSA +L S++ VD +
Sbjct: 68 RGEDTASTADARA-FAQELAAALAAPVRLVDERLSTVSAHGVLRQAGRSQRDSRSIVDQV 126
Query: 140 AAALILQEVLD 150
AA ++LQ+ LD
Sbjct: 127 AAVVLLQQALD 137
>gi|295103244|emb|CBL00788.1| conserved hypothetical protein TIGR00250 [Faecalibacterium
prausnitzii SL3/3]
Length = 143
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D G R GLA D + K + A + +IGLP
Sbjct: 2 KILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIEAEMILIGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+EG R +R ++ +P WDER TT +A +L + +R + +
Sbjct: 62 LNMDGTEGERAAKSRKLAKT-VELWSGLPVRMWDERQTTCAAADLLDESGTYGSRRKEIL 120
Query: 137 DSIAAALILQEVL 149
DS++A +IL++ L
Sbjct: 121 DSVSATVILEDYL 133
>gi|17545395|ref|NP_518797.1| Holliday junction resolvase-like protein [Ralstonia solanacearum
GMI1000]
gi|32130046|sp|Q8Y1L4|RUVX_RALSO RecName: Full=Putative Holliday junction resolvase
gi|17427687|emb|CAD14206.1| putative holliday junction resolvase protein [Ralstonia
solanacearum GMI1000]
Length = 144
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D G KRIG+A+ + R A + + V ++ + F++G+
Sbjct: 15 HGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITRLVNAWQPVGFVVGM 74
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P++ G + P + + F + + R +P + DER ++++AQ D +
Sbjct: 75 PVHPEGEDQPMIKLAKRFGNQLHGR-YGLPVTWVDERYSSIAAQ----DAGAT----DDV 125
Query: 136 VDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 126 LDAEAARIILQQFFDE 141
>gi|269468190|gb|EEZ79886.1| Holliday junction resolvase YqgF [uncultured SUP05 cluster
bacterium]
Length = 140
Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
Q D+GTKR G+AI++ A + K + I+ ++ FI+GL
Sbjct: 3 QTYLGFDVGTKRTGVAIANSLTSQATGIDVVKNHKDGSSNWEGFDQIISAHSVDLFIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P N +GSE ++F + +++ + DE L++ A+ L +
Sbjct: 63 PFNKDGSEQEMTFIAKSFARKL-EKRYQIKTELIDEYLSSNEAKNQLKYNHYHPNAERSD 121
Query: 136 VDSIAAALILQEVLDR 151
VD +A LILQ L+
Sbjct: 122 VDKRSAQLILQTWLNE 137
>gi|319760386|ref|YP_004124324.1| hypothetical protein BVAF_252 [Candidatus Blochmannia vafer str.
BVAF]
gi|318039100|gb|ADV33650.1| conserved hypothetical protein [Candidatus Blochmannia vafer str.
BVAF]
Length = 146
Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GTK IG+A+ L T + I+GLPL
Sbjct: 7 IMAFDFGTKNIGVAVGQKLTCTTTSLNVLHSIAGTPDWKNIELMYNEWKPKTLIVGLPLQ 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKRIQK 135
++GSE ++ F + ++ +DER TT+ A+ + S+ K + K
Sbjct: 67 IDGSEQYITILSKKFAIQLKNK-FNTTVEMYDERFTTLEARSNFYNQYCSKFSEKIKKNK 125
Query: 136 VDSIAAALILQEVLD 150
+DSIAA +IL+ L+
Sbjct: 126 IDSIAAEIILKSWLN 140
>gi|71892031|ref|YP_277761.1| putative endonuclease involved in recombination [Candidatus
Blochmannia pennsylvanicus str. BPEN]
gi|146325553|sp|Q493F4|RUVX_BLOPB RecName: Full=Putative Holliday junction resolvase
gi|71796137|gb|AAZ40888.1| putative endonuclease involved in recombination [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 144
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 7/137 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK IG+AI A P L + + T F++GLPL
Sbjct: 10 VMGFDFGTKHIGVAIGQKLTCTAQPLTVLQSQSGVPNWKRIRDIYNTWKPMIFVVGLPLK 69
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR----KKRIQ 134
++GSE P + F + VP DER +T A+ L +
Sbjct: 70 IDGSEQPITILAKIFAIQL-KELFPVPVKMHDERFSTSEAR--LNYFKYYHDDLCARSNI 126
Query: 135 KVDSIAAALILQEVLDR 151
K+++IAA +IL+ L++
Sbjct: 127 KINAIAAGVILKSWLNK 143
>gi|33519715|ref|NP_878547.1| Holliday junction resolvase-like protein [Candidatus Blochmannia
floridanus]
gi|62901014|sp|Q7VRG7|RUVX_BLOFL RecName: Full=Putative Holliday junction resolvase
gi|33504060|emb|CAD83321.1| putative endonuclease involved in recombination [Candidatus
Blochmannia floridanus]
Length = 142
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GTK+IG+AI L K ++ I+GLPL
Sbjct: 8 IMAFDFGTKKIGIAIGQKITGTTQSLEILPSKFGIPNWKKIEHIFNVWKPNKLIVGLPLK 67
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKVD 137
MNG+ ++ F + R + DER TT+ A+ I +K+ +D
Sbjct: 68 MNGNTQHITLLSKRFAVQLTHR-FKITVEMHDERFTTIEARSIYFQHFRYYYRKKTTPID 126
Query: 138 SIAAALILQEVLDR 151
SIAA +IL+ L++
Sbjct: 127 SIAAEIILKSWLNQ 140
>gi|326329807|ref|ZP_08196127.1| putative Holliday junction resolvase [Nocardioidaceae bacterium
Broad-1]
gi|325952393|gb|EGD44413.1| putative Holliday junction resolvase [Nocardioidaceae bacterium
Broad-1]
Length = 156
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA----AFIIGL 75
+D G RIG+A SDP A P + KK L + + ++GL
Sbjct: 7 LGLDPGDARIGVARSDPTGFLATPLETV--KKGRGDLARLQAIVAEIGEESTMLEVVVGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P ++ G E P R F ++ R VP DERLTTVSA+ +L D + R
Sbjct: 65 PRSLKGGENPATAKVRDFAASLARRVAPVPVRLVDERLTTVSAEAMLRDRGRKGQDRRAV 124
Query: 136 VDSIAAALILQEVLDRISFLESSKG 160
VD AA +ILQ LD ++ G
Sbjct: 125 VDMAAAVVILQHALDSERASGAAPG 149
>gi|269126370|ref|YP_003299740.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM
43183]
gi|268311328|gb|ACY97702.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM
43183]
Length = 152
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID+G+ RIG+A SDP A P + R K + + I+GLP ++
Sbjct: 3 LGIDVGSVRIGVARSDPAGILATPLETVRRGKG--DLDRIAELVAEHEAVEVIVGLPTSL 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV----PFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+G GP R F + R + +DERLTTV+A+ L V K R Q
Sbjct: 61 SGRSGPAAAQARRFAEALAGRLSQLLPDGGVRLYDERLTTVTAEAELRRSGVRGKARRQV 120
Query: 136 VD 137
VD
Sbjct: 121 VD 122
>gi|183601534|ref|ZP_02962904.1| possible endonuclease [Bifidobacterium animalis subsp. lactis
HN019]
gi|219683929|ref|YP_002470312.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
AD011]
gi|241190967|ref|YP_002968361.1| putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241196373|ref|YP_002969928.1| putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|183219140|gb|EDT89781.1| possible endonuclease [Bifidobacterium animalis subsp. lactis
HN019]
gi|219621579|gb|ACL29736.1| putative Holliday junction resolvase [Bifidobacterium animalis
subsp. lactis AD011]
gi|240249359|gb|ACS46299.1| Putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240250927|gb|ACS47866.1| Putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|289178709|gb|ADC85955.1| Hypothetical cytosolic protein [Bifidobacterium animalis subsp.
lactis BB-12]
gi|295793956|gb|ADG33491.1| Putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis V9]
Length = 163
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK----VTQTALELLSFITTEN--IAAFII 73
+DLG R+G+A S+P R FA+P + V L+L+ E + A I
Sbjct: 6 LGLDLGNARVGVAASNPERSFAYPEGNIRVYGDYFQVFDDVLDLIEDKAEEGTPVTAIAI 65
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-----------VP-FVFWDERLTTVSAQQI 121
GLPL M+GS G + + ++ R +P +F DERLTTV A +
Sbjct: 66 GLPLQMDGSAGSSAKKAQRWAKSLRRRLESEMEDQDSHIGVMPDIIFIDERLTTVDAHRR 125
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
L D NVS K+ VD +A ILQ LDR
Sbjct: 126 LFDANVSSKQHRAVVDQQSAVEILQTALDRAR 157
>gi|329904540|ref|ZP_08273847.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium
IMCC9480]
gi|327547934|gb|EGF32683.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium
IMCC9480]
Length = 135
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G KRIG+A+ + R A + + + + A I+G+
Sbjct: 1 METVLGFDFGLKRIGVAVGNTVIRQAQALTIIDAATNDAKFAAIAVLVASWQPARCIVGM 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + +G+E R F + + R +P V DER T+ V ++R ++
Sbjct: 61 PFHPDGAEHEMSVRCRRFANQLHGR-YGLPTVLVDERYTSA----------VLGQQRGER 109
Query: 136 VDSIAAALILQEVLD 150
+D AAALILQ+ D
Sbjct: 110 IDDRAAALILQQYFD 124
>gi|297571414|ref|YP_003697188.1| Holliday junction resolvase YqgF [Arcanobacterium haemolyticum DSM
20595]
gi|296931761|gb|ADH92569.1| Holliday junction resolvase YqgF [Arcanobacterium haemolyticum DSM
20595]
Length = 153
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 32 AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
A D A P R++ ++ + + I+GLP NM+GSEG + R
Sbjct: 19 ARCDTAGILATPVATYRRER--DDFSSVIELVREADALEVIVGLPRNMDGSEGKSAKNAR 76
Query: 92 AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
+ + R V DERLTTVSA Q+L + VD +AA +IL+ L +
Sbjct: 77 RWAKRLARRIAPVHVRMVDERLTTVSAHQMLHESGRKEINHRSVVDQVAAVIILESALAQ 136
>gi|317507137|ref|ZP_07964896.1| hypothetical protein HMPREF9336_01267 [Segniliparus rugosus ATCC
BAA-974]
gi|316254558|gb|EFV13869.1| hypothetical protein HMPREF9336_01267 [Segniliparus rugosus ATCC
BAA-974]
Length = 164
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-------ALELLSFITTEN 67
P P +DLG RIGLAISD G FA P L R L +
Sbjct: 4 PLGPRLGVDLGQARIGLAISDQGGVFAAPLMALERATGKPPKLALADDLAALAGVVEEHR 63
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
IA ++G P N+ G + FV + VP DER+TT+ A + L + V
Sbjct: 64 IALVVVGWPRNLKGEAARAARTAEEFVERLRAAVAPVPVRLVDERVTTLLAHRQLREAGV 123
Query: 128 S-----RKKRIQKVDSIAAALILQEVLD 150
S RK + VD +AA ILQ LD
Sbjct: 124 SGKRLVRKGQRGVVDQLAATAILQGWLD 151
>gi|319790615|ref|YP_004152248.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1]
gi|317115117|gb|ADU97607.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1]
Length = 134
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIG+A+SDP + A P L RK +T ELL + + + ++G+P+N
Sbjct: 1 MALDVGFKRIGVALSDPLKLTASPYRILYRKSNRETFEELLKIVLDKGVEEIVVGIPINA 60
Query: 80 NGSEGPRVHSTRAFVHN----MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
G + F + +R +P DE +T A+++ + K ++
Sbjct: 61 QGEKTKIGQKIEKFTAKLQSFLRERGYQIPIYTHDESFSTQEAREVARSLG----KEKEE 116
Query: 136 VDSIAAALILQEVLD 150
+D AAALIL+E L+
Sbjct: 117 LDDYAAALILKEWLE 131
>gi|296270019|ref|YP_003652651.1| Holliday junction resolvase YqgF [Thermobispora bispora DSM 43833]
gi|296092806|gb|ADG88758.1| Holliday junction resolvase YqgF [Thermobispora bispora DSM 43833]
Length = 163
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G+ RIG+A SDP A P + R + + ++GLP ++
Sbjct: 7 IGVDVGSVRIGVARSDPSGVLAVPVETVRRGR--DDLDRIAEIAAEHEAIEVVVGLPTSL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G E + R + + R +P DERLTTV+AQ+ L + +++ +D
Sbjct: 65 SGRESHAAKAAREYAARLAARLAPIPVRLVDERLTTVTAQRRLRSSGIRARQQRDIIDQA 124
Query: 140 AAALILQEVLD 150
AA +LQ LD
Sbjct: 125 AAVELLQAALD 135
>gi|283769385|ref|ZP_06342284.1| RNAse H-fold protein YqgF [Bulleidia extructa W1219]
gi|283104042|gb|EFC05426.1| RNAse H-fold protein YqgF [Bulleidia extructa W1219]
Length = 140
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG+ G++ S AH + + + ++L+ I E ++G PL
Sbjct: 5 LGLDLGSVTCGVSAS-ETGLIAHTVETIRFKNEDYNEAMDKVLAIIEREKPDEIVLGYPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+NG GPR + +++ + +P DER TTV A++IL+ ++SRKKR +K+D
Sbjct: 64 LLNGDVGPRAQLSEE-FKEVLEEECGLPVHLMDERFTTVEAEEILLQADISRKKRKKKID 122
Query: 138 SIAAALILQEVLDRI 152
+AA ILQ LDRI
Sbjct: 123 QLAAVQILQYYLDRI 137
>gi|326531638|dbj|BAJ97823.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 187
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 10/163 (6%)
Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55
M +L E+L + L K + +D+G+K +GLA+SD R A P L R K
Sbjct: 1 MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 60
Query: 56 --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
A + + + ++A ++G P N+ G P V + + + + +WDE
Sbjct: 61 LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 120
Query: 112 RLTTVSAQQILIDMNVS-RKKRIQKVDSIAAALILQEVLDRIS 153
T+ + +L +N++ R + D AA ILQ LD ++
Sbjct: 121 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMN 163
>gi|326514774|dbj|BAJ99748.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 199
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 10/163 (6%)
Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55
M +L E+L + L K + +D+G+K +GLA+SD R A P L R K
Sbjct: 13 MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 72
Query: 56 --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
A + + + ++A ++G P N+ G P V + + + + +WDE
Sbjct: 73 LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 132
Query: 112 RLTTVSAQQILIDMNVS-RKKRIQKVDSIAAALILQEVLDRIS 153
T+ + +L +N++ R + D AA ILQ LD ++
Sbjct: 133 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMN 175
>gi|145631446|ref|ZP_01787216.1| Holliday junction resolvase-like protein [Haemophilus influenzae
R3021]
gi|144982983|gb|EDJ90492.1| Holliday junction resolvase-like protein [Haemophilus influenzae
R3021]
Length = 134
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG AI A P + + + I+GLPLNM
Sbjct: 6 LAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
+G+E R F + + R V DERLTT A+ + + + +
Sbjct: 66 DGTEQDLTLRARKFANRLQGR-FGVNVHLQDERLTTTQARSEIFERGGFKALKK 118
>gi|313678596|ref|YP_004056336.1| hypothetical protein MBOVPG45_0505 [Mycoplasma bovis PG45]
gi|312950363|gb|ADR24958.1| conserved hypothetical protein TIGR00250 [Mycoplasma bovis PG45]
Length = 146
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTEN--IAAFIIGL 75
S DLGTK G AISD A+ + ++ I I AF++G
Sbjct: 4 LSFDLGTKTCGFAISDILEISANALETIRFDENDFNVVITKVKEIIKMYQNSIDAFVLGY 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL NGS+ R F + + + DE +T+ AQ+IL D +S KK K
Sbjct: 64 PLRSNGSKSERTVMVDNFATLLANEFPGINIYLVDEYGSTIKAQRILKDAKLSNKKTKSK 123
Query: 136 VDSIAAALILQEVL 149
D+++A +IL + L
Sbjct: 124 KDTVSAVIILNDFL 137
>gi|294056021|ref|YP_003549679.1| Holliday junction resolvase YqgF [Coraliomargarita akajimensis DSM
45221]
gi|293615354|gb|ADE55509.1| Holliday junction resolvase YqgF [Coraliomargarita akajimensis DSM
45221]
Length = 153
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID G KRIGLA +D A P P V + + I + ++G PLNM
Sbjct: 4 LGIDWGEKRIGLAFADEVG-IALPLPAAVAVSKKERMRHIEQMIQERRVRELVVGYPLNM 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + AF+ + +++ +P DERL++ S +Q L ++ ++DS
Sbjct: 63 DGSVGFKAKEVDAFIEEL-EKRFRLPVSRIDERLSSHSVEQGLRGQKKKPDRKSGEIDSR 121
Query: 140 AAALILQEVLDRISFLE 156
AAALILQ+ ++ E
Sbjct: 122 AAALILQDFIEEKRLNE 138
>gi|182415341|ref|YP_001820407.1| Holliday junction resolvase YqgF [Opitutus terrae PB90-1]
gi|226731633|sp|B1ZVE0|RUVX_OPITP RecName: Full=Putative Holliday junction resolvase
gi|177842555|gb|ACB76807.1| Holliday junction resolvase YqgF [Opitutus terrae PB90-1]
Length = 145
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
ID GT+RIGLA D A P P LV + LL+ + ++G PL
Sbjct: 2 RCLGIDYGTRRIGLAYGDELG-VATPLPALVEADPAKRWQSLLATARQRRVTDLVVGHPL 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+ + GP+ A + V DERLT+ A+ + + +D
Sbjct: 61 NMDDTAGPKAKEAEAVAARLRTELAGVDVHLVDERLTSYEAEATISKTQRRAVRASGVID 120
Query: 138 SIAAALILQEVLDR 151
S AA LILQ+ LD+
Sbjct: 121 SRAATLILQDFLDQ 134
>gi|254445960|ref|ZP_05059436.1| conserved hypothetical protein TIGR00250 [Verrucomicrobiae
bacterium DG1235]
gi|198260268|gb|EDY84576.1| conserved hypothetical protein TIGR00250 [Verrucomicrobiae
bacterium DG1235]
Length = 149
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+D G +R+G+A D A P +V+ + L+ F+ G P
Sbjct: 2 RCIGVDYGERRVGVAFGDDIG-VATPLQAIVKATEEERIQALVDLARERRATDFVFGYPY 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNGS G + AF+ ++ + +P DERLT+V A + +R K+D
Sbjct: 61 NMNGSVGFKAKEVDAFIDKLLKA-IDLPVHRLDERLTSVEASKAFPKKRDDELRRSGKID 119
Query: 138 SIAAALILQEVLDR 151
S+AA+LILQ+ L++
Sbjct: 120 SVAASLILQDYLNQ 133
>gi|148377681|ref|YP_001256557.1| putative Holliday junction resolvase [Mycoplasma agalactiae PG2]
gi|259495708|sp|A5IYK4|RUVX_MYCAP RecName: Full=Putative Holliday junction resolvase
gi|148291727|emb|CAL59113.1| Putative Holliday junction resolvase [Mycoplasma agalactiae PG2]
Length = 146
Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTEN--IAAFIIGL 75
S DLGTK G AISD A+ + +++ I I AF++G
Sbjct: 4 LSFDLGTKTCGFAISDILEISANALETIRFVENDFNAVIVKVKEIIKMYQNSIDAFVLGY 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL NGS+ R F + + + DE +T+ AQ+IL D +S KK K
Sbjct: 64 PLRSNGSKSERTMMVDNFAILLANEFPGINIYLVDEYGSTIKAQRILKDAKLSNKKTKSK 123
Query: 136 VDSIAAALILQEVL 149
D+++A +IL + L
Sbjct: 124 KDTVSAVIILNDFL 137
>gi|320161632|ref|YP_004174857.1| putative holliday junction resolvase [Anaerolinea thermophila
UNI-1]
gi|319995486|dbj|BAJ64257.1| putative holliday junction resolvase [Anaerolinea thermophila
UNI-1]
Length = 152
Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D G RIGLAISDP A + A + T + + I+G
Sbjct: 2 KGRILAVDPGDVRIGLAISDPTGTIARALGVIHHVARAIDAATIAQIATEQGVVRIIVGQ 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
L+ +G P+ + I ++ +P WDE +T AQ M V RK+R
Sbjct: 62 ALDDHGLPTPQGRKSARLAEA-IQQQTSIPVELWDESGSTNKAQDTRRIMGVKRKQRQGH 120
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ+ L+
Sbjct: 121 LDDLAAVIILQDYLE 135
>gi|302335909|ref|YP_003801116.1| Holliday junction resolvase YqgF [Olsenella uli DSM 7084]
gi|301319749|gb|ADK68236.1| Holliday junction resolvase YqgF [Olsenella uli DSM 7084]
Length = 137
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G R+G+A SD A P L ++V + + + G PL M
Sbjct: 4 LALDIGEVRVGIAASDASGAVASPVRVLPAQEVLSCSRTFRRILEDYEPDVLVCGRPLTM 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G +GP+ + +P F DERL++ A++IL + S + +VD +
Sbjct: 64 AGEDGPQADRVMGQARRIAT-SCDLPLEFADERLSSQEAKRILREEGYSERDMRGRVDMV 122
Query: 140 AAALILQEVLD 150
AA+L LQ LD
Sbjct: 123 AASLFLQAWLD 133
>gi|260062213|ref|YP_003195293.1| Holliday junction resolvase-like protein [Robiginitalea biformata
HTCC2501]
gi|88783775|gb|EAR14946.1| Holliday junction resolvase-like protein [Robiginitalea biformata
HTCC2501]
Length = 132
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
D G KR G+A++DP + A + + L S++ E + +IG P M+ S
Sbjct: 2 DYGQKRTGIAVTDPLQMIASGLTTVQ---TPELLDFLESYMGEEQVERIVIGEPRRMDNS 58
Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKVDSIA 140
R+F+ + R +P DER ++ A + +I+ + +++ VD I+
Sbjct: 59 PSGIEAEIRSFIERIKKRFPDLPLSRQDERFSSQMAVRAMIEGGMKKKKRRDKAAVDKIS 118
Query: 141 AALILQEVL 149
A LILQ L
Sbjct: 119 ATLILQSYL 127
>gi|212716058|ref|ZP_03324186.1| hypothetical protein BIFCAT_00971 [Bifidobacterium catenulatum DSM
16992]
gi|212661425|gb|EEB22000.1| hypothetical protein BIFCAT_00971 [Bifidobacterium catenulatum DSM
16992]
Length = 151
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 68/147 (46%), Gaps = 13/147 (8%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
IDLG R+GLA+SDPG A+P + V + E++ I E + I+GLPL
Sbjct: 4 LGIDLGDARVGLALSDPGITLAYPAGNIQVYGDSFRALDEVVDVIEDELVDHVIVGLPLL 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRK-----------VYVP-FVFWDERLTTVSAQQILIDMN 126
++G EG R + N+ R VP DERLTTV+A L D
Sbjct: 64 LSGEEGKSAKKARRWTVNLERRLRAAVEDDEYSLTQVPTIELVDERLTTVTAHHQLFDAQ 123
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153
+ + VD +A +ILQ +DR
Sbjct: 124 IGGHEHRPMVDQQSAVVILQTAIDRRK 150
>gi|145588432|ref|YP_001155029.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046838|gb|ABP33465.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 138
Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 58/137 (42%), Gaps = 9/137 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + + + D GT+R+G+A+ + + + LE+ S + +
Sbjct: 1 MPKSITVMAFDYGTRRVGVAVGNSVTQLGQALKTIAAANSEILFLEVASLLKEWQPDQLV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G PL+ +G+ F + + +P + DER T+ +++ + K
Sbjct: 61 VGRPLHPDGTPHEMTAKASRFGNQL-HGHFALPVSWVDERYTS-----AILEGD---AKM 111
Query: 133 IQKVDSIAAALILQEVL 149
+D+ +AALIL++
Sbjct: 112 QDNLDAHSAALILEQYF 128
>gi|42560803|ref|NP_975254.1| hypothetical protein MSC_0255 [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|313665149|ref|YP_004047020.1| RNAse YqgF [Mycoplasma leachii PG50]
gi|62900983|sp|Q6MTZ0|RUVX_MYCMS RecName: Full=Putative Holliday junction resolvase
gi|42492299|emb|CAE76896.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|301320708|gb|ADK69351.1| RNAse YqgF [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
gi|312949870|gb|ADR24466.1| RNAse YqgF [Mycoplasma leachii PG50]
Length = 143
Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
Q I ++D+G+K IGLA S A + + Q +L S++ N ++G
Sbjct: 3 QSIIALDIGSKTIGLAYS--SGVIASSLDTIRFEEYNFDQGLRQLESYLKKYNPTIIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYV---PFVFWDERLTTVSAQQILIDMNVSRKK 131
P NMN + G R + +D + DER TT A+ ILI N++R+K
Sbjct: 61 YPKNMNNTIGERAEMVDYVIEMFLDMYKNFNKDQIIRIDERRTTKIAKNILIQANLTREK 120
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
+ + DS+AA LIL+ L+
Sbjct: 121 QKKYKDSLAAQLILELYLESRK 142
>gi|149926767|ref|ZP_01915027.1| Holliday junction resolvase-like protein [Limnobacter sp. MED105]
gi|149824696|gb|EDM83912.1| Holliday junction resolvase-like protein [Limnobacter sp. MED105]
Length = 144
Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D G KRIG+A + + A + + Q ++ S + ++G+P
Sbjct: 14 LAFDFGLKRIGVAFGNSLTKTASGIAVVEAQNDEQRFAKIESLVKEWQPEGLVVGVPRQP 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G++ F + + + +P DER T+ + + + ++ +VD
Sbjct: 74 DGADNELTTRCERFARQL-EGRFALPCAMVDERYTSAIIESCM--GGKAARENKGRVDMG 130
Query: 140 AAALILQEVL 149
+A LIL++
Sbjct: 131 SACLILEQFF 140
>gi|261855953|ref|YP_003263236.1| Holliday junction resolvase YqgF [Halothiobacillus neapolitanus c2]
gi|261836422|gb|ACX96189.1| Holliday junction resolvase YqgF [Halothiobacillus neapolitanus c2]
Length = 165
Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-TALELLSFITTENIAAFIIGL 75
+ D G RIG+A+ + A P L + Q + + ++G
Sbjct: 8 GTWLAFDYGAWRIGVAVGEQMLGSARPLTTLHHRNAHQIQWDAIGQLLDEWRPVGLVLGW 67
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
PL +G P R F + D + +P + DERL++ AQ +L + K +
Sbjct: 68 PLMDSGETYPVAEFIRRFGRRL-DGRFNLPVRYVDERLSSEHAQMLLTTRHGKDKVKKSP 126
Query: 134 QKVDSIAAALILQEVLDR 151
+D+ AAA+IL+ +
Sbjct: 127 SMIDAQAAAIILETFFSQ 144
>gi|256384327|gb|ACU78897.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
str. GM12]
gi|256385160|gb|ACU79729.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
str. GM12]
gi|296455329|gb|ADH21564.1| conserved hypothetical protein [synthetic Mycoplasma mycoides
JCVI-syn1.0]
Length = 143
Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
Q I ++D+G+K IGLA S A + + Q +L S++ N + ++G
Sbjct: 3 QSIIALDIGSKTIGLAYS--SGVIASSLDTIRFEEYNFNQGLKQLDSYLKKYNPSIIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVH---NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
P NMN + G R + +M + DER TT A+ ILI N++R+K
Sbjct: 61 YPKNMNNTIGERAEMVDYVIEMFLDMYKNFNEDQIIKIDERRTTKIAKNILIQANLTREK 120
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
+ + DS+AA LIL+ L+
Sbjct: 121 QKKYKDSLAAQLILELYLESRK 142
>gi|270307497|ref|YP_003329555.1| Holliday junction resolvase [Dehalococcoides sp. VS]
gi|270153389|gb|ACZ61227.1| Holliday junction resolvase [Dehalococcoides sp. VS]
Length = 133
Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
G K IG+A+SDP R A P L R +T + + + T ++GLP+++NG+ G
Sbjct: 2 GDKWIGVALSDPLRILASPLVILRRDDDGKTVENIEALVKTHQPDLLVVGLPVSLNGTIG 61
Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
P+ +AF ++ + + VF DER +T A++ + D + K + A+I
Sbjct: 62 PQAEKVKAFSG-LLSQSLDTEIVFRDERFSTDEARRKMNDSGKNNKTVRDDAAAA--AVI 118
Query: 145 LQEVLDRIS 153
LQ+ LD +
Sbjct: 119 LQDYLDETN 127
>gi|312135027|ref|YP_004002365.1| holliday junction resolvase yqgf [Caldicellulosiruptor owensensis
OL]
gi|311775078|gb|ADQ04565.1| Holliday junction resolvase YqgF [Caldicellulosiruptor owensensis
OL]
Length = 138
Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76
I +D+G R+G+AISDP + A P + K EL +I +IG P
Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPVMTIELKN-KDLFDELDKIFQRYSIEKVVIGYPL 60
Query: 77 --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L+ + + ++ I + V V WDER +T + ++++ + ++ K++ +
Sbjct: 61 SKLHPDLKD-EKLKKIDEISEK-IGSRYNVEIVKWDERFSTKAVERVMNEE-LNWKRKKK 117
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ LD
Sbjct: 118 VIDKVAAVYILQGYLD 133
>gi|145220493|ref|YP_001131202.1| Holliday junction resolvase YqgF [Prosthecochloris vibrioformis DSM
265]
gi|145206657|gb|ABP37700.1| Holliday junction resolvase YqgF [Chlorobium phaeovibrioides DSM
265]
Length = 142
Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + ID GTKRIGLA++DP R FA P R+ + E+ + IA ++G
Sbjct: 3 KKRLVGIDYGTKRIGLAVADPLRIFARPVGTFSREGLQGALEEIE---RQDGIATLVVGY 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
PL+ G F+ + + V DE ++ A IL SRK R
Sbjct: 60 PLSSGGETNAMTGVIDRFITELGEAFPDVAIERVDEYHSSREAVHILAAAGGSRKDRQKK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
++D+ AA ++L L+ S
Sbjct: 120 GRLDTAAACVLLTRYLEESS 139
>gi|83319719|ref|YP_424202.1| holliday junction resolvase, putative [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
gi|146325579|sp|Q2SSR1|RUVX_MYCCT RecName: Full=Putative Holliday junction resolvase
gi|83283605|gb|ABC01537.1| holliday junction resolvase, putative [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
Length = 143
Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
Q I + D+G+K IGLA S A + + Q +L ++ N + ++G
Sbjct: 3 QSIIAFDIGSKTIGLAYS--SGVIASSLDTIRFEEYNFDQGLKQLELYLKKYNPSIIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVH---NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
P NMN + G R + +M + DER TT A+ ILI N++R+K
Sbjct: 61 YPKNMNNTIGERAEMVDYVIEMFLDMYKSFNKDQIIKVDERRTTKIAKNILIQANLTREK 120
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
+ + DS+AA LIL+ L+
Sbjct: 121 QKKYKDSLAAQLILELYLESRK 142
>gi|296394105|ref|YP_003658989.1| Holliday junction resolvase YqgF [Segniliparus rotundus DSM 44985]
gi|296181252|gb|ADG98158.1| Holliday junction resolvase YqgF [Segniliparus rotundus DSM 44985]
Length = 200
Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-------TALELLSFITTENI 68
P IDLG RIGLAISDP FA P L R L + I
Sbjct: 41 RGPRLGIDLGQARIGLAISDPDAVFAAPFAALERATGKPPKLALAEDLAALAEVVREHRI 100
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++G P N+ G + FV + + VP DER+TT+ A + L + VS
Sbjct: 101 ALVVVGWPRNLKGEAATAARTAEEFVRRLGEVIAPVPVRLVDERVTTLLAHRQLREAGVS 160
Query: 129 -----RKKRIQKVDSIAAALILQEVLD 150
RK + VD +AA ILQ LD
Sbjct: 161 GKRLVRKGQRGVVDQLAATAILQGWLD 187
>gi|331703303|ref|YP_004399990.1| Holliday junction resolvase [Mycoplasma mycoides subsp. capri LC
str. 95010]
gi|328801858|emb|CBW54011.1| Conserved hypothetical protein, probable Holliday junction
resolvase [Mycoplasma mycoides subsp. capri LC str.
95010]
Length = 143
Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
Q I ++D+G+K IGLA S A + + Q +L S++ N + ++G
Sbjct: 3 QSIIALDIGSKTIGLAYS--SGVIASSLDTIRFEEYNFDQGLKQLDSYLKKYNPSIIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYV---PFVFWDERLTTVSAQQILIDMNVSRKK 131
P NMN + G R + +D + DER TT A+ ILI N++R+K
Sbjct: 61 YPKNMNNTIGERAEMVDYVIEMFLDMYKNFNKDQIIKIDERRTTKIAKNILIQANLTREK 120
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
+ + DS+AA LIL+ L+
Sbjct: 121 QKKYKDSLAAQLILELYLESRK 142
>gi|308189957|ref|YP_003922888.1| Holliday junction resolvase [Mycoplasma fermentans JER]
gi|319777239|ref|YP_004136890.1| putative holliday junction resolvase [Mycoplasma fermentans M64]
gi|307624699|gb|ADN69004.1| putative Holliday junction resolvase [Mycoplasma fermentans JER]
gi|318038314|gb|ADV34513.1| Putative Holliday junction resolvase [Mycoplasma fermentans M64]
Length = 144
Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
++DLGTK G AISD G A L ++ + T I ++G PL
Sbjct: 4 LALDLGTKTCGFAISDEGMIIASALETLHFEENDFNAIIEQIKIYQKTYKIDKLVLGKPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
N + R +F H + +E TT++A IL + +S KKR D
Sbjct: 64 RSNNTSSERTVLFESFAHKLKGIFKDYKIYQVNEYGTTIAATNILKEAKLSIKKRKAHKD 123
Query: 138 SIAAALILQEVLDR 151
+++A LILQE L+
Sbjct: 124 TLSAVLILQEFLNY 137
>gi|163782351|ref|ZP_02177349.1| hypothetical protein HG1285_06175 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882384|gb|EDP75890.1| hypothetical protein HG1285_06175 [Hydrogenivirga sp. 128-5-R1-1]
Length = 132
Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +ID GTKR+GLAI D A P+ L + + + ++ + ++GLPL
Sbjct: 2 KIIAIDFGTKRVGLAIGDTDLGIAVPKGVL--RNDANLLDRIEDIVRSKGVKKVVVGLPL 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G EG R R F + R V WDER +T+ A+ L D + ++R + +D
Sbjct: 60 TPSGREGERAKLVREFAEALRKRLKDVDIELWDERYSTMEAESRLRD--LPPRRRREVLD 117
Query: 138 SIAAALILQEVL 149
+I+A +IL+E L
Sbjct: 118 AISAQIILEEYL 129
>gi|269795076|ref|YP_003314531.1| hypothetical protein Sked_17700 [Sanguibacter keddieii DSM 10542]
gi|269097261|gb|ACZ21697.1| conserved hypothetical protein TIGR00250 [Sanguibacter keddieii DSM
10542]
Length = 167
Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---------TALELLS 61
++L+ +D+G+ R+G+A+SDP A P L R VT L
Sbjct: 5 QALERGAR-LCVDVGSVRVGVAVSDPDGLIATPVETLPRDVVTAAKNPAAVPTDLAALAE 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ + +GLP +++G+EG S RA+ + VP DER++TV+A Q
Sbjct: 64 QVVERGVKVVYVGLPRHLSGAEGTASASARAYAVQVARLVAPVPVRLVDERMSTVTAHQA 123
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L + +K VD +AA +ILQ LD
Sbjct: 124 LHASGRAGRKHRAVVDQVAAVVILQSALD 152
>gi|300784620|ref|YP_003764911.1| holliday junction resolvase [Amycolatopsis mediterranei U32]
gi|299794134|gb|ADJ44509.1| putative holliday junction resolvase [Amycolatopsis mediterranei
U32]
Length = 133
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 32 AISDPGRRFAHPRPFLVRKKVTQ-TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHST 90
A+SDP A P L R +L + +T + I+GLP + +GP
Sbjct: 2 ALSDPAPVLASPLVTLSRDATDDTDLDQLAALVTEHEVVEVIVGLPRTLANRQGPAAELA 61
Query: 91 RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
A+ + R VP DERLTTV+A +IL V +K+ VD AA ILQ +D
Sbjct: 62 IAYSERLAGRIAPVPVRLGDERLTTVTASRILSQRGVKGRKQRAVVDQAAAVEILQAWID 121
Query: 151 RISFLESSKG 160
+ + +G
Sbjct: 122 AAAAHRAREG 131
>gi|238809908|dbj|BAH69698.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 145
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
++DLGTK G AISD G A L ++ + T I ++G PL
Sbjct: 5 LALDLGTKTCGFAISDEGMIIASALETLHFEENDFNAIIEQIKIYQKTYKIDKLVLGKPL 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
N + R +F H + +E TT++A IL + +S KKR D
Sbjct: 65 RSNNTSSERTVLFESFAHKLKGIFKDYKIYQVNEYGTTIAATNILKEAKLSIKKRKAHKD 124
Query: 138 SIAAALILQEVLDR 151
+++A LILQE L+
Sbjct: 125 TLSAVLILQEFLNY 138
>gi|94311674|ref|YP_584884.1| Holliday junction resolvase-like protein [Cupriavidus metallidurans
CH34]
gi|146325596|sp|Q1LJR1|RUVX_RALME RecName: Full=Putative Holliday junction resolvase
gi|93355526|gb|ABF09615.1| putative Holliday junction resolvase (YqgF-like) [Cupriavidus
metallidurans CH34]
Length = 149
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 13/157 (8%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ + + L + + + + D G K+IG+A+ + R A L V +
Sbjct: 1 MTRDMPDQLGRETPRDGTVLAFDYGEKKIGVALGNFITRQASALTILPNVTVEARFDAVG 60
Query: 61 SFITTENIAAFIIGLPLN----MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116
I ++G+P+N + E P + R F + + + + +P + DER ++
Sbjct: 61 ELIRQWTPVRLVVGMPVNPEAGPDDEEQPSMRLARRFGNQL-NGRFNLPVEWVDERYSSR 119
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+A ++ KR +D+ AA +ILQ+ D +
Sbjct: 120 AAA-------MAGAKR-GALDAEAARIILQQYFDELP 148
>gi|15606654|ref|NP_214034.1| hypothetical protein aq_1498 [Aquifex aeolicus VF5]
gi|6226434|sp|O67469|RUVX_AQUAE RecName: Full=Putative Holliday junction resolvase
gi|2983890|gb|AAC07442.1| hypothetical protein aq_1498 [Aquifex aeolicus VF5]
Length = 131
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D GTKR+GLAI D + P+ + + ++ + + I+GLPL
Sbjct: 2 KVLAVDYGTKRVGLAIGDEELKIVSPKGTV---SSKEAVKKIKEIVEKSRVGKVIVGLPL 58
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G EG R + FV + + + WDER TT A + L + KK+ + D
Sbjct: 59 TPSGKEGQRAKLVKDFVEKLREELPNTEIILWDERWTTAEAMRRL--EGLPPKKKKELKD 116
Query: 138 SIAAALILQEVLDRI 152
I+A +IL+E L+ +
Sbjct: 117 VISAMIILEEYLNSV 131
>gi|325294689|ref|YP_004281203.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065137|gb|ADY73144.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 141
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 7/138 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + ++D+G K+IG+A+SDP A+P + RK +T +LL I ++ IIG+
Sbjct: 1 MKRVMALDVGFKKIGIAVSDPLLLTANPHSIIYRKSNKETFSKLLELIEKLDVGKIIIGI 60
Query: 76 PLNMNGSEGPRVHSTRAFVHN----MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
P++ G E + F + +R + VF DE +++ A+++ + K
Sbjct: 61 PISSEGKETKMAEKIKKFALKLDSFLKERGKKIEIVFIDESYSSLEAKELCRFLG---KT 117
Query: 132 RIQKVDSIAAALILQEVL 149
+++D IAAAL+L+E L
Sbjct: 118 EKEEIDDIAAALMLKEWL 135
>gi|291320345|ref|YP_003515607.1| putative Holliday junction resolvase [Mycoplasma agalactiae]
gi|290752678|emb|CBH40651.1| Putative Holliday junction resolvase [Mycoplasma agalactiae]
Length = 146
Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTEN--IAAFIIGL 75
+ DLGTK G AISD A+ + ++ +I I AF++G
Sbjct: 4 LAFDLGTKTCGFAISDILEISANAIETIYFSENDFNAVINKVKEYIKQYQNSIDAFVLGY 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL NG++ R F + + DE +T+ AQ+IL D+ S KK K
Sbjct: 64 PLRSNGTKSERTLMVDDFAKLLALNFSNISIYLVDEYGSTIKAQRILKDVKFSNKKTKSK 123
Query: 136 VDSIAAALILQEVL 149
D+++A +IL + L
Sbjct: 124 KDTLSAVIILNDFL 137
>gi|332670519|ref|YP_004453527.1| Holliday junction resolvase YqgF [Cellulomonas fimi ATCC 484]
gi|332339557|gb|AEE46140.1| Holliday junction resolvase YqgF [Cellulomonas fimi ATCC 484]
Length = 186
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-------KKVTQTALELLSFITTENIAAFI 72
++D+G+ R+GLA SDP A P L R ++V ++ A
Sbjct: 12 LAVDVGSVRVGLAASDPDGLVATPVATLARDTPGRKERRVPTDVAAIVHEAGERGAAVVY 71
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP +++G+EG + RA+ + VP DER++TV+A Q L S ++
Sbjct: 72 VGLPRHLSGAEGAASAAARAYSVGLAQAVAPVPVRLVDERMSTVTAHQALQASGRSGRRH 131
Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
Q VD AA +ILQ LD G
Sbjct: 132 RQVVDQAAAVVILQYALDAERATGRRPG 159
>gi|71893554|ref|YP_279000.1| hypothetical protein MHJ_0198 [Mycoplasma hyopneumoniae J]
gi|72080541|ref|YP_287599.1| hypothetical protein MHP7448_0202 [Mycoplasma hyopneumoniae 7448]
Length = 130
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 27 KRIGLAISDPGRRFAHPRP--FLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
K G AISD + ++P R + ++ I+ ++G PL + G
Sbjct: 2 KTCGFAISDQNWKISYPLEQFNFNRYDFASVISRIAFWMKEYPISILVLGYPLTLAGKIS 61
Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
PR F +++ + + VF DERLTT AQ L+D+ +S KKR + +D +AA +I
Sbjct: 62 PRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFLLDLGISFKKRQKVIDKLAAQII 120
Query: 145 LQEVLD 150
L+ L+
Sbjct: 121 LERFLN 126
>gi|327402963|ref|YP_004343801.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823]
gi|327318471|gb|AEA42963.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823]
Length = 142
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA+SD + FA + K + EL ++ E I +IG
Sbjct: 1 MSKILAIDFGLKRTGLALSDESKIFAFGLQTIDSKTL---MDELKKLVSKEKITEIVIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P ++ S+ + R + V DER T+ A ++ + +K R
Sbjct: 58 PKRLDTSDSHITQNVRLLKEAVQKVFPEVLVCMLDERFTSKMASAVIAQSGLKKKDREQK 117
Query: 134 QKVDSIAAALILQEVL 149
+D+++A +ILQ+ L
Sbjct: 118 GLIDTVSATIILQDYL 133
>gi|294341151|emb|CAZ89552.1| putative holliday junction resolvase [Thiomonas sp. 3As]
Length = 137
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G KRIG A+ + R A L + + + I ++GLPL
Sbjct: 14 TVLGFDWGAKRIGTAVGNSLTRSATALRTLRADRNDLKFDAIAALIREWQPQQLVVGLPL 73
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ + F + + + +P DER T+V+A+ + VD
Sbjct: 74 HPDGAAHDNTAHAQRFARQL-EGRFRLPVALVDERYTSVAAED----------DGAKDVD 122
Query: 138 SIAAALILQEVLDR 151
S AA LI+++ L +
Sbjct: 123 SAAAQLIVEQYLQQ 136
>gi|297624148|ref|YP_003705582.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093]
gi|297165328|gb|ADI15039.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093]
Length = 154
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G +RIG+A + G FA R + R+ + + + E A ++GLP
Sbjct: 5 VLALDVGERRIGVARGEVGSPFAFGRGVIARRSLRADVAAVRALADAEGAARVVVGLPRR 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQKV 136
+ G + + RAF + + + VF DER T+ A Q L+ + R +R +V
Sbjct: 65 LRGGDSAQTSRVRAFAAQL--QAAGLEVVFEDERFTSRIATQSLVKSGLKRGQRQEKGRV 122
Query: 137 DSIAAALILQEVL 149
D AA LIL+ L
Sbjct: 123 DEGAAVLILETYL 135
>gi|118602105|ref|YP_903320.1| Holliday junction resolvase YqgF [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
gi|118567044|gb|ABL01849.1| Holliday junction resolvase YqgF [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
Length = 142
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLPLN 78
D+GTKR G+AI++ A + K T + I+ NI F++GLP N
Sbjct: 7 LGFDVGTKRTGIAIANSLTMQATGIKVIKHHKNGSTNWVAFNEVISAHNINKFVVGLPFN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G E ++F + + +R + F DE L++ A+++L + + VD
Sbjct: 67 QQGKEQTMTFIAKSFGNKLKNR-YQIEVEFIDEYLSSNEAKKLLKYNHHHHNAQRDDVDK 125
Query: 139 IAAALILQEVLDRISF 154
++ LILQ L+ F
Sbjct: 126 QSSQLILQTWLNEKRF 141
>gi|21232178|ref|NP_638095.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|66767693|ref|YP_242455.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. campestris str. 8004]
gi|32130039|sp|Q8P766|RUVX_XANCP RecName: Full=Putative Holliday junction resolvase
gi|81306327|sp|Q4UWY8|RUVX_XANC8 RecName: Full=Putative Holliday junction resolvase
gi|21113933|gb|AAM42019.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573025|gb|AAY48435.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 155
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+++P+ + D+G++RIG+A+ A + + L A
Sbjct: 4 AGAIRPDATVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVHKEWRPA 63
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMN 126
++G PL ++ + P AF + +R +P V DER ++V A Q
Sbjct: 64 GLVVGDPLTLDDKDQPARKRAHAFARELRER-YALPVVLIDERSSSVEAAQRFARERADG 122
Query: 127 VSRKKRIQKVDSIAAALILQEVL 149
R++ +D++AAA+I++ L
Sbjct: 123 RKRRRDADTLDAMAAAVIVERWL 145
>gi|312793390|ref|YP_004026313.1| holliday junction resolvase yqgf [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312877035|ref|ZP_07737008.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796176|gb|EFR12532.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
lactoaceticus 6A]
gi|312180530|gb|ADQ40700.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 138
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76
I +D+G R+G+AISDP + A P + + EL S +I +IG P
Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDSIFQRFSIEKVVIGYPL 60
Query: 77 --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L+ + + ++ I + V V WDER +T + ++++ + ++ K++ +
Sbjct: 61 SKLHPD-QKDEKLKKIDEISEK-IKSRYNVEIVKWDERFSTKAVERVMNEE-LNWKRKKK 117
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ LD
Sbjct: 118 VIDKVAAVYILQGYLD 133
>gi|297820018|ref|XP_002877892.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp.
lyrata]
gi|297323730|gb|EFH54151.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp.
lyrata]
Length = 542
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+D+G K +GLAISDP A P L+RKK A + + + +++ ++G
Sbjct: 394 GRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKTNIDLMATDFQNLVKAFSVSGLVVG 453
Query: 75 LPLN-MNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
P +N E V + F+ + ++ V + +WDERL++ + + +L +N+ +
Sbjct: 454 YPFGKLNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQ 511
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
+D +AA +ILQE LD +
Sbjct: 512 EKTMLDKLAAVVILQEYLDYAN 533
>gi|148244218|ref|YP_001218912.1| hypothetical protein COSY_0050 [Candidatus Vesicomyosocius okutanii
HA]
gi|146326045|dbj|BAF61188.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
HA]
Length = 142
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTENIAAFIIGLP 76
D+GTKR G+AI++ A + K T +EL I + NI FI+GLP
Sbjct: 5 TYLGFDIGTKRTGVAIANSLTMRATGIAVIKHHKDNSTNWVELDEVINSHNIKLFIVGLP 64
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ G E ++F + +R + F DE L++ A+++L + + V
Sbjct: 65 FDKQGKEQIMTFIAKSFGKKLKNR-YQIEVEFIDEYLSSNEAKKLLKYNHHHHNAQRGNV 123
Query: 137 DSIAAALILQEVLDRISF 154
D ++ LILQ L+ F
Sbjct: 124 DKQSSQLILQTWLNEKKF 141
>gi|57233582|ref|YP_180806.1| hypothetical protein DET0051 [Dehalococcoides ethenogenes 195]
gi|146325567|sp|Q3ZAE3|RUVX_DEHE1 RecName: Full=Putative Holliday junction resolvase
gi|57224030|gb|AAW39087.1| conserved hypothetical protein TIGR00250 [Dehalococcoides
ethenogenes 195]
Length = 133
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
G K IG+A+SDP R A P L R +T + + + T +IGLP+++NG+ G
Sbjct: 2 GDKWIGVALSDPLRILASPLVILRRDDDAKTVENIEALVKTHQPDLLVIGLPVSLNGTIG 61
Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
P+ +AF ++ + + +F DER +T A++ + D + K + A+I
Sbjct: 62 PQAEKVKAFSG-LLSQSLNTEIIFRDERFSTDEARRKMNDSGKNNKTVRDDAAAA--AVI 118
Query: 145 LQEVLDRIS 153
LQ+ LD +
Sbjct: 119 LQDYLDETN 127
>gi|7529715|emb|CAB86895.1| putative protein [Arabidopsis thaliana]
Length = 548
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+D+G K +GLAISDP A P L+RKK A + + + +++ ++G
Sbjct: 400 GRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAFSVSGLVVG 459
Query: 75 LPLN-MNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
P +N E V + F+ + ++ V + +WDERL++ + + +L +N+ +
Sbjct: 460 YPFGKLNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQ 517
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
+D +AA +ILQE LD +
Sbjct: 518 EKTMLDKLAAVVILQEYLDYAN 539
>gi|256826955|ref|YP_003150914.1| hypothetical protein Ccur_05110 [Cryptobacterium curtum DSM 15641]
gi|256583098|gb|ACU94232.1| conserved hypothetical protein TIGR00250 [Cryptobacterium curtum
DSM 15641]
Length = 140
Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ S+D+G R G+AISDP R A P L +V A + + GLPL
Sbjct: 2 RVLSLDIGQVRCGIAISDPTGRVASPVCVLPSGEVIGCARSFKRLLDDWQPDLLLAGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
++GS G + RA + D +P F DERL++ A+++L + ++ + K+D
Sbjct: 62 TLSGSSGGQAQRIRAQAQQIAD-TSGLPLEFVDERLSSQEAKRMLREEGLTERDMRGKID 120
Query: 138 SIAAALILQEVLDRISF 154
IAA++ LQ LDR
Sbjct: 121 MIAASIFLQAWLDRQRA 137
>gi|317402658|gb|EFV83214.1| hollyday junction resolvase [Achromobacter xylosoxidans C54]
Length = 133
Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 9/137 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + R A P + + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGVAIGNTLTRHARPLEIIFSEVRDVRFARIEALLREWQPHRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L L+ +G E P R F + + R V DER +++ AQ++L
Sbjct: 62 LALDADGGEQPATARCRRFANQLHGR-FGVAVELVDERGSSMEAQRLLGTHAADDAMAAA 120
Query: 135 KVDSIAAALILQEVLDR 151
ILQ LD+
Sbjct: 121 V--------ILQRYLDK 129
>gi|73748006|ref|YP_307245.1| hypothetical protein cbdb_A67 [Dehalococcoides sp. CBDB1]
gi|147668700|ref|YP_001213518.1| Holliday junction resolvase YqgF [Dehalococcoides sp. BAV1]
gi|289432003|ref|YP_003461876.1| Holliday junction resolvase YqgF [Dehalococcoides sp. GT]
gi|146325568|sp|Q3ZWC2|RUVX_DEHSC RecName: Full=Putative Holliday junction resolvase
gi|73659722|emb|CAI82329.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1]
gi|146269648|gb|ABQ16640.1| Holliday junction resolvase YqgF [Dehalococcoides sp. BAV1]
gi|288945723|gb|ADC73420.1| Holliday junction resolvase YqgF [Dehalococcoides sp. GT]
Length = 133
Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
G K IG A+SDP R A P L R T+T + S + T IIGLP+++NG+ G
Sbjct: 2 GDKWIGAALSDPLRILASPLVILRRDDDTKTLENIESLVKTHQPDLLIIGLPISLNGTIG 61
Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
P+ ++F ++ R + + ++ DER +T A++ + D + K + A+I
Sbjct: 62 PQAEKVKSFSE-LLSRHLNIEIIYRDERFSTDEARRKMNDSGKNNKTVRDDAAAA--AVI 118
Query: 145 LQEVLDRIS 153
LQ+ LD +
Sbjct: 119 LQDYLDETN 127
>gi|269114906|ref|YP_003302669.1| Putative holliday junction resolvase [Mycoplasma hominis]
gi|268322531|emb|CAX37266.1| Putative Holliday junction resolvase [Mycoplasma hominis ATCC
23114]
Length = 144
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 7/143 (4%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTEN----IAAF 71
I ++DLGTK G AISDP A + ++L ++ I
Sbjct: 2 RILALDLGTKSCGFAISDPNNIIASGLENFRFELNHFNLVIEKVLHYLNKSEYQGSIGTI 61
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++G PL M+ S+ R + F + + V +P VF DER +T+ AQ+IL + KK
Sbjct: 62 VLGYPLRMDLSKSQRTYMVERFGERL-KKVVDIPVVFQDERQSTIGAQEILQSAGWNTKK 120
Query: 132 RIQKVDSIAAALILQEVLDRISF 154
K DS+AA LIL++ L I +
Sbjct: 121 SKSKKDSLAAQLILEDYLKGIKY 143
>gi|254468380|ref|ZP_05081786.1| conserved hypothetical protein TIGR00250 [beta proteobacterium
KB13]
gi|207087190|gb|EDZ64473.1| conserved hypothetical protein TIGR00250 [beta proteobacterium
KB13]
Length = 161
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ L DL + K + + DLG K+ G+A+ + + + K Q ++
Sbjct: 1 MTKLDNYDLKEINKKKGSVLAFDLGIKKTGVAVGNNVLKTSRNLVTFYSKNKNQRIEKIK 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ ++GLP N + S I++ + +P F +E ++ SA++
Sbjct: 61 QLVNEWQPIYLVLGLPSNRDSSANETTKFCLNTAKE-IEKNINLPIFFVNENYSSTSAEE 119
Query: 121 ILIDMNVSR-KKRIQKVDSIAAALILQEVLDRI 152
++ D+ + K I VD IAA +ILQ + +
Sbjct: 120 LIKDLGNKKQKNNISLVDQIAADIILQSHFNEV 152
>gi|284044489|ref|YP_003394829.1| Holliday junction resolvase YqgF [Conexibacter woesei DSM 14684]
gi|283948710|gb|ADB51454.1| Holliday junction resolvase YqgF [Conexibacter woesei DSM 14684]
Length = 133
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D G+ R G A+SDP A P + R + L++ + + ++GLPL
Sbjct: 2 RVLALDYGSARCGCALSDPTGTLATPIAHVERPGTRKGMARLVALVRDREVDRVVVGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
++G++ + RAF + + +P +DER TTV A+++ +
Sbjct: 62 GLSGADTAQTAEVRAFAQRLGEALGEQIPIDLYDERFTTVIAERV---------GGRESE 112
Query: 137 DSIAAALILQEVL 149
DS AAA++L+ L
Sbjct: 113 DSRAAAVLLEGWL 125
>gi|332530313|ref|ZP_08406259.1| Holliday junction resolvase-like protein [Hylemonella gracilis ATCC
19624]
gi|332040299|gb|EGI76679.1| Holliday junction resolvase-like protein [Hylemonella gracilis ATCC
19624]
Length = 136
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 8/140 (5%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ Q ++D G KR G+A+ + + A P+ + R + ++ I
Sbjct: 1 MAVTAAQQTFLALDFGLKRTGVAVGNRLLKQAQPQATI-RAEGDARFTQIAERIREWQPD 59
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
A ++G+P + +G+ R F + R +P DER +T A I
Sbjct: 60 ALVVGVPFHPDGAAHDNTERARKFARQLRGR-FGLPVHEVDERYSTTEA----IAEGGGG 114
Query: 130 KKRIQKVDSIAAALILQEVL 149
K+ D+ AA +IL++ L
Sbjct: 115 KRFDA--DAGAACVILEQFL 132
>gi|33591551|ref|NP_879195.1| hypothetical protein BP0320 [Bordetella pertussis Tohama I]
gi|62901015|sp|Q7W045|RUVX_BORPE RecName: Full=Putative Holliday junction resolvase
gi|33571193|emb|CAE40697.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332380951|gb|AEE65798.1| hypothetical protein BPTD_0315 [Bordetella pertussis CS]
Length = 133
Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 9/139 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + R A P + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPL ++G E P R F + + + DER +++ AQQ+L
Sbjct: 62 LPLTLDGQEQPASARARRFANQL-HGHFGLAVELVDERSSSMEAQQLLGTHADDDAVAAA 120
Query: 135 KVDSIAAALILQEVLDRIS 153
ILQ LD +S
Sbjct: 121 V--------ILQRYLDTLS 131
>gi|300175399|emb|CBK20710.2| Holliday junction resolvase YqgF [Blastocystis hominis]
Length = 167
Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 16/163 (9%)
Query: 1 MSILLIEDL------VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ 54
M++L ++ L V ++P + +D+GT +G+A+SDP A P+ L+R +
Sbjct: 1 MAVLTVKQLQSLYSKVAHIRP--RLLGLDVGTTFVGVALSDPTLTLALPQGTLLRTDCLR 58
Query: 55 TALE--LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDE 111
L+ + AF++GLPL +G E + + F+H + ++ +P VF DE
Sbjct: 59 PFKSNPLIKLVQQYRTFAFVVGLPLLESGEESIQCEDVKLFIHEFWNHTEMPMPVVFEDE 118
Query: 112 RLTTVSAQ---QILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
+T A + + +R R + D AAA+ILQ LD
Sbjct: 119 WGSTQMAMDDYRYQKKRDWNRGLRKK--DENAAAIILQSFLDS 159
>gi|329942939|ref|ZP_08291718.1| hypothetical protein G5Q_0615 [Chlamydophila psittaci Cal10]
gi|332287530|ref|YP_004422431.1| Holliday junction resolvase-like protein [Chlamydophila psittaci
6BC]
gi|313848107|emb|CBY17106.1| putative Holliday junction resolvase [Chlamydophila psittaci RD1]
gi|325506817|gb|ADZ18455.1| Holliday junction resolvase-like protein [Chlamydophila psittaci
6BC]
gi|328815199|gb|EGF85188.1| hypothetical protein G5Q_0615 [Chlamydophila psittaci Cal10]
gi|328914779|gb|AEB55612.1| conserved hypothetical protein TIGR00250 [Chlamydophila psittaci
6BC]
Length = 150
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGLPLN 78
+D G KRIGLA + + P F+ K + +LL I N++ ++G P+
Sbjct: 11 LGVDYGEKRIGLAYASSPLCISLPIGFIATGKTLEATAKLLVGIIQERNVSTVVLGNPIP 70
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKVD 137
M + + + +++ V + WDERL++ A+++L D +SRKKR K D
Sbjct: 71 MQKGQKSALQEDILKLSSLLQEFCPVEVILWDERLSSAEAERMLKGDCGLSRKKRKGKTD 130
Query: 138 SIAAALILQEVLDRISFL 155
SIAA LIL L+ L
Sbjct: 131 SIAANLILTSFLESSPHL 148
>gi|33598438|ref|NP_886081.1| hypothetical protein BPP3931 [Bordetella parapertussis 12822]
gi|33603378|ref|NP_890938.1| hypothetical protein BB4404 [Bordetella bronchiseptica RB50]
gi|62901016|sp|Q7W3U6|RUVX_BORPA RecName: Full=Putative Holliday junction resolvase
gi|62901017|sp|Q7WF76|RUVX_BORBR RecName: Full=Putative Holliday junction resolvase
gi|33574567|emb|CAE39214.1| conserved hypothetical protein [Bordetella parapertussis]
gi|33577502|emb|CAE34767.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 133
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 9/139 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + R A P + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPL ++G E P R F + + R + DER +++ AQQ+L
Sbjct: 62 LPLTLDGQEQPASARARRFANQLHGR-FGLAVELVDERGSSMEAQQLLGTHAADDAVAAA 120
Query: 135 KVDSIAAALILQEVLDRIS 153
ILQ LD +
Sbjct: 121 V--------ILQRYLDTLP 131
>gi|145332817|ref|NP_001078274.1| DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic
acid binding / recombinase [Arabidopsis thaliana]
gi|26449955|dbj|BAC42098.1| unknown protein [Arabidopsis thaliana]
gi|332645487|gb|AEE79008.1| Polynucleotidyl transferase/ ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 170
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+D+G K +GLAISDP A P L+RKK A + + + +++ ++G
Sbjct: 22 GRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAFSVSGLVVG 81
Query: 75 LPLN-MNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
P +N E V + F+ + ++ V + +WDERL++ + + +L +N+ +
Sbjct: 82 YPFGKLNNVED--VVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQ 139
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
+D +AA +ILQE LD +
Sbjct: 140 EKTMLDKLAAVVILQEYLDYAN 161
>gi|172040633|ref|YP_001800347.1| putative Hollyday junction resolvase [Corynebacterium urealyticum
DSM 7109]
gi|171851937|emb|CAQ04913.1| putative Hollyday junction resolvase [Corynebacterium urealyticum
DSM 7109]
Length = 143
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 52/118 (44%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
++D+G+ RIG+A+SDP A P + ++ I + I+
Sbjct: 21 PGRGRRLALDVGSVRIGVALSDPDGILASPLETVAAAVDGSDVARVVELIEENFVVEVIV 80
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
GLP+ + G+ + F ++ + +P DER++T++A Q VS KK
Sbjct: 81 GLPVALRGNHTSSTVAALDFYEDLGEELPELPIRLVDERMSTMAATQAFQASGVSAKK 138
>gi|303256218|ref|ZP_07342234.1| putative Holliday junction resolvase [Burkholderiales bacterium
1_1_47]
gi|302860947|gb|EFL84022.1| putative Holliday junction resolvase [Burkholderiales bacterium
1_1_47]
Length = 144
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
++ L + + + D G KRIG+A+ + + A P + KK Q E+ ++ A
Sbjct: 1 MERLSEDSIVIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVLSDWQPA 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
A ++G+P + +G F N ++ + +P V DER ++V A+ +
Sbjct: 61 AVVVGVPRHKDGKPNDMTPICERFA-NQVEGRYGIPVVREDERYSSVEAESYHDADDDEP 119
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
AA+IL + L+++
Sbjct: 120 IDDEA------AAIILDQWLNKVP 137
>gi|93004892|ref|YP_579329.1| Holliday junction resolvase YqgF [Psychrobacter cryohalolentis K5]
gi|146325594|sp|Q1QEQ8|RUVX_PSYCK RecName: Full=Putative Holliday junction resolvase
gi|92392570|gb|ABE73845.1| Holliday junction resolvase YqgF [Psychrobacter cryohalolentis K5]
Length = 173
Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G K++G+A+ + A L LL I +A ++GLPLN
Sbjct: 25 ILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKVVVGLPLN 84
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY--VPFV--FWDERLTTVSAQQILIDMNVSRKKRIQ 134
M+GS F + R + +P + DERLT+V+A++I + + +R
Sbjct: 85 MDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGWIKHER-A 143
Query: 135 KVDSIAAALILQEVL 149
+D I+A +++
Sbjct: 144 PIDDISACILMSTYF 158
>gi|312622551|ref|YP_004024164.1| holliday junction resolvase yqgf [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203018|gb|ADQ46345.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
kronotskyensis 2002]
Length = 138
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76
I +D+G R+G+AISDP + A P + + EL NI +IG P
Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDKIFQGYNIEKVVIGYPL 60
Query: 77 --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L+ + + ++ I+ + V V WDER +T + +++ ID ++ K++ +
Sbjct: 61 SKLHPD-QKDEKLKKIDEISEK-IESRYNVEIVKWDERFSTKAVERV-IDEELNWKRKKK 117
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ LD
Sbjct: 118 IIDKVAAVYILQGYLD 133
>gi|261749261|ref|YP_003256946.1| Holliday junction resolvase-like protein [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
gi|261497353|gb|ACX83803.1| Holliday junction resolvase-like protein [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
Length = 141
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ID G GL+I+DP ++FA + K + L I + I +IGLP
Sbjct: 3 RILGIDYGKVITGLSITDPLQKFAFGLNAIPTKNLMSF---LAILIAKKPIKKIVIGLPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR-IQKV 136
+N S + F+ + + V DER T+ A +I++ + +K+R +
Sbjct: 60 TLNNKNALIEKSIQNFISKFHKKNPKIRIVRIDERFTSKIAFSTMIELGLKKKRRQKGLI 119
Query: 137 DSIAAALILQEVL 149
+ I+A +ILQ L
Sbjct: 120 NKISATIILQSYL 132
>gi|29840356|ref|NP_829462.1| Holliday junction resolvase-like protein [Chlamydophila caviae
GPIC]
gi|33301619|sp|Q822T1|RUVX_CHLCV RecName: Full=Putative Holliday junction resolvase
gi|29834705|gb|AAP05340.1| conserved hypothetical protein TIGR00250 [Chlamydophila caviae
GPIC]
Length = 163
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFI 72
K + ID G +RIGLA + + P + + ++L + I +++ +
Sbjct: 7 KKEKTFLGIDYGQRRIGLAYAASPLFISLPIGCIEAGNTVEATAKILFNIIQERSVSCVV 66
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131
+G P+ M + + + ++I V + WDERL++ A+++L D +SRKK
Sbjct: 67 LGNPIPMQKGQKSALQEEITKLSSLIQESCGVEVILWDERLSSAQAERMLKGDCGLSRKK 126
Query: 132 RIQKVDSIAAALILQEVLDR 151
R K D+IAA LIL L+
Sbjct: 127 RKGKTDTIAATLILTSFLES 146
>gi|296136975|ref|YP_003644217.1| Holliday junction resolvase YqgF [Thiomonas intermedia K12]
gi|295797097|gb|ADG31887.1| Holliday junction resolvase YqgF [Thiomonas intermedia K12]
Length = 137
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G KRIG A+ + R A L + + + I ++GLPL
Sbjct: 14 TVLGFDWGAKRIGTAVGNSLTRSATALRSLRADRNDLKFDAIAALIREWQPQQLVVGLPL 73
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ + F + + + +P DER T+V+A+ + VD
Sbjct: 74 HPDGAAHDNTAHAQRFARQL-EGRFRLPVALVDERYTSVAAED----------DGAKDVD 122
Query: 138 SIAAALILQEVLDR 151
S AA LI+++ L +
Sbjct: 123 SAAAQLIVEQYLQQ 136
>gi|222529202|ref|YP_002573084.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM
6725]
gi|254767493|sp|B9MRK7|RUVX_ANATD RecName: Full=Putative Holliday junction resolvase
gi|222456049|gb|ACM60311.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM
6725]
Length = 138
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76
I +D+G R+G+AISDP + A P + + EL NI +IG P
Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDKIFQGYNIEKVVIGYPL 60
Query: 77 --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L+ + + ++ I + V V WDER +T + +++ ID ++ K++ +
Sbjct: 61 SKLHPD-QKDEKLKKIDEISEK-IGSRYNVEIVKWDERFSTKAVERV-IDEELNWKRKKK 117
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ LD
Sbjct: 118 IIDKVAAVYILQGYLD 133
>gi|331001274|ref|ZP_08324900.1| RNAse H domain protein, YqgF family [Parasutterella
excrementihominis YIT 11859]
gi|329569001|gb|EGG50797.1| RNAse H domain protein, YqgF family [Parasutterella
excrementihominis YIT 11859]
Length = 150
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 7/147 (4%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
+ ++ L + + + D G KRIG+A+ + + A P + KK Q E+ ++
Sbjct: 4 QSALERLSEDSIVIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVLSDW 63
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
AA ++G+P + +G F N ++ + +P V DER ++V A+ +
Sbjct: 64 QPAAVVVGVPRHKDGKPNDMTPICERFA-NQVEGRYGIPVVREDERYSSVEAESYHDADD 122
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153
AA+IL + L+++
Sbjct: 123 DEPIDDEA------AAIILDQWLNKVP 143
>gi|328950126|ref|YP_004367461.1| Holliday junction resolvase [Marinithermus hydrothermalis DSM
14884]
gi|328450450|gb|AEB11351.1| Holliday junction resolvase [Marinithermus hydrothermalis DSM
14884]
Length = 141
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D+G RIGLA D RFA R +L R + + +F E ++GLPL
Sbjct: 2 KVVALDVGDARIGLAAGDTETRFAFGRGYLQRTSLEADVQAVAAFAAREGAQRVVVGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+GS + V + R+ + DER TT AQ + + +++ ++D
Sbjct: 62 RTDGSLSAQAEKVLRLVEAL--RRAGLVVETVDERYTTQLAQARVRALPKRKRREKGRLD 119
Query: 138 SIAAALILQEVL 149
AA IL+ L
Sbjct: 120 EAAAVAILETYL 131
>gi|312127726|ref|YP_003992600.1| holliday junction resolvase yqgf [Caldicellulosiruptor
hydrothermalis 108]
gi|311777745|gb|ADQ07231.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
hydrothermalis 108]
Length = 138
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76
I +D+G R+G+AISDP + A P + + EL +I +IG P
Sbjct: 2 RILCLDMGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDKIFQRYSIEKVVIGYPL 60
Query: 77 --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L+ + + ++ I + V V WDER +T + +++ I+ ++ K++ +
Sbjct: 61 SKLHPD-QKDEKLKKIDEISEK-IKSRYNVEIVKWDERFSTKAVEKV-INGELNWKRKKK 117
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ LD
Sbjct: 118 VIDKVAAVYILQGYLD 133
>gi|89900172|ref|YP_522643.1| Holliday junction resolvase-like protein [Rhodoferax ferrireducens
T118]
gi|146325599|sp|Q21YP1|RUVX_RHOFD RecName: Full=Putative Holliday junction resolvase
gi|89344909|gb|ABD69112.1| Holliday junction resolvase YqgF [Rhodoferax ferrireducens T118]
Length = 156
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q ++D G KR G A+ + R A P+ + + +++ + A ++G+P
Sbjct: 33 QTFLALDFGLKRTGFAVGNRLLRTAQPQGTIAAE-GDARFVKIALQLKEWQPDALVVGVP 91
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ R F + R +P DER TT A + R R
Sbjct: 92 FHPDGAAHENTLRARRFARQLQGR-FKLPVFEVDERYTTTEA--------LGRGARDA-- 140
Query: 137 DSIAAALILQEVL 149
D++AA +IL++ L
Sbjct: 141 DAMAACIILEQFL 153
>gi|71064637|ref|YP_263364.1| hypothetical protein Psyc_0056 [Psychrobacter arcticus 273-4]
gi|146325593|sp|Q4FVM8|RUVX_PSYA2 RecName: Full=Putative Holliday junction resolvase
gi|71037622|gb|AAZ17930.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 177
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
++KP I ++D G K++G+A+ + A L LL I +A
Sbjct: 23 AIKP-HLILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKV 81
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFV--FWDERLTTVSAQQILIDMNV 127
++GLPLNM+GS F + R + +P + DERLT+V+A++I +
Sbjct: 82 VVGLPLNMDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGW 141
Query: 128 SRKKRIQKVDSIAAALILQEVL 149
+ +R +D I+A +++
Sbjct: 142 IQNER-DPIDDISACILMSTYF 162
>gi|116074750|ref|ZP_01472011.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9916]
gi|116067972|gb|EAU73725.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9916]
Length = 157
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ + S+D+G KRIGLA DP P P + R + Q L + TT + A ++
Sbjct: 4 PKPRSVLSLDVGRKRIGLAGCDPLGISVRPLPAIRRSRFDQDLEHLRALCTTRQVDALVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ G + + + + + +P + +E ++ +A + R
Sbjct: 64 GLPLDDKGQRTAQAEHCERYGRRLA-QTLALPLAWVNEHSSSWAAGESRNLHG----DRS 118
Query: 134 QKVDSIAAALILQEVL 149
++DS AAAL+L++ L
Sbjct: 119 GRLDSEAAALLLEQWL 134
>gi|123968388|ref|YP_001009246.1| endonuclease [Prochlorococcus marinus str. AS9601]
gi|167012750|sp|A2BQS8|RUVX_PROMS RecName: Full=Putative Holliday junction resolvase
gi|123198498|gb|ABM70139.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. AS9601]
Length = 153
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+K KP + I S+D+GTKRIGLA DP ++ P + R + Q + ++I N+
Sbjct: 1 MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
FI+G+PL+ G + + + ++ ++ +PF + +E +T + +
Sbjct: 61 TGFIVGIPLDEKGKMTTQAIDCKNYGQ-LLSNELKLPFSYVNEHSSTWESSERF----GI 115
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+K + +DS +A +IL++ ++ LE G
Sbjct: 116 KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147
>gi|213018933|ref|ZP_03334741.1| putative holliday junction resolvase [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
gi|212995884|gb|EEB56524.1| putative holliday junction resolvase [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
Length = 136
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G K+IG+A SD + A R+ +++ L + + +IGLP +
Sbjct: 1 MCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLNRVLKENEAGSMVIGLPFTI 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ E F + +I + V DE L+T A L +S K + D I
Sbjct: 61 DEQETEWCKVIIQFANKIIKK-CKVHIYLQDESLSTSLATHALKITGISITKSKKIDDKI 119
Query: 140 AAALILQEVLDRISFLE 156
AA +ILQ LD+I+ ++
Sbjct: 120 AACIILQRTLDKINAIK 136
>gi|297742527|emb|CBI34676.3| unnamed protein product [Vitis vinifera]
Length = 224
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 6/159 (3%)
Query: 2 SILLIEDLVK-SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALE 58
+ L DL+K + +D+G K +GLA+SD + A P L+RKK A +
Sbjct: 61 PVNLFHDLLKMKATERGRLLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATD 120
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTV 116
S I+ ++A FI+G P N S P + + F+ ++ + V + +WDE T+
Sbjct: 121 FQSLISDLSLAGFIVGYPFNRQRS-SPTAVNVKVFIDDLCKTGKLEGVRYTYWDECFTSK 179
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ + +L +N+ + +D AA ILQ LD ++ +
Sbjct: 180 NVELLLKPLNLHPVQSKTILDKFAAVGILQGYLDHVNRI 218
>gi|225426409|ref|XP_002269986.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 169
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 6/159 (3%)
Query: 2 SILLIEDLVK-SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALE 58
+ L DL+K + +D+G K +GLA+SD + A P L+RKK A +
Sbjct: 6 PVNLFHDLLKMKATERGRLLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATD 65
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTV 116
S I+ ++A FI+G P N S P + + F+ ++ + V + +WDE T+
Sbjct: 66 FQSLISDLSLAGFIVGYPFNRQRS-SPTAVNVKVFIDDLCKTGKLEGVRYTYWDECFTSK 124
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ + +L +N+ + +D AA ILQ LD ++ +
Sbjct: 125 NVELLLKPLNLHPVQSKTILDKFAAVGILQGYLDHVNRI 163
>gi|50365281|ref|YP_053706.1| Holliday junction resolvase [Mesoplasma florum L1]
gi|62900971|sp|Q6F101|RUVX_MESFL RecName: Full=Putative Holliday junction resolvase
gi|50363837|gb|AAT75822.1| possible Holliday junction resolvase [Mesoplasma florum L1]
Length = 142
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFII 73
I +D+G+K IGLA S A L + + L FI ++ F+
Sbjct: 1 MSNILGLDVGSKTIGLASS--TGNVAKKEINLKFEEWNFEEGVSLLTEFIKDKSFDTFVF 58
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV---PFVFWDERLTTVSAQQILIDMNVSRK 130
G P NMNGS G R F+ + + + DER TT A+ I+I+ +SR+
Sbjct: 59 GYPKNMNGSIGERAEMVDYFIEGFMVYNPEIKEEQIIRIDERRTTKMAKSIMIEAGLSRQ 118
Query: 131 KRIQKVDSIAAALILQEVLDRIS 153
K+ + D++AA LIL+ L++I
Sbjct: 119 KQKENKDTLAAQLILETYLEKIK 141
>gi|319957356|ref|YP_004168619.1| holliday junction resolvase yqgf [Nitratifractor salsuginis DSM
16511]
gi|319419760|gb|ADV46870.1| Holliday junction resolvase YqgF [Nitratifractor salsuginis DSM
16511]
Length = 130
Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 5/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
IA++D+G KRIG+AIS P R P+ + R+ Q A EL F+ + ++GLP
Sbjct: 2 IAAVDVGLKRIGVAIS-PDGRIVLPQRAIERRGRKQAAKELSDFLREWKVDLLVVGLPRG 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ SE R FV ++++ + + DE ++ A++ + R+KR ++DS
Sbjct: 61 GS-SEEEMERRIRHFV-SLLELPPQMEVHYQDEAGSSEEAKERM--QGAIRQKRDGRIDS 116
Query: 139 IAAALILQEVLDR 151
+AA +IL+ L+R
Sbjct: 117 LAAQIILERWLER 129
>gi|72382039|ref|YP_291394.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str.
NATL2A]
gi|146325589|sp|Q46LD7|RUVX_PROMT RecName: Full=Putative Holliday junction resolvase
gi|72001889|gb|AAZ57691.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str.
NATL2A]
Length = 144
Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ S+D+G KRIG+A DP P + R + E + I G PL
Sbjct: 8 SVLSLDIGDKRIGIAGCDPLGISITHLPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPL 67
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+MNG E + + + + + +P F +E +TV A++ + + ++D
Sbjct: 68 DMNGMETKQSIRCKKYGIKLAK-CLKLPLAFINEHCSTVEAKEKFS----LKNDKTGRID 122
Query: 138 SIAAALILQEVL 149
S AAA++LQ+ L
Sbjct: 123 SAAAAILLQQWL 134
>gi|255537457|ref|XP_002509795.1| conserved hypothetical protein [Ricinus communis]
gi|223549694|gb|EEF51182.1| conserved hypothetical protein [Ricinus communis]
Length = 168
Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 6/156 (3%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALEL 59
I L DL+KS K N + +D+G K +GLAISD + A P L+RKK A +
Sbjct: 6 PIALFNDLMKS-KSNGRLLGLDVGDKYVGLAISDRHNKIASPLSVLLRKKSNIDLVATDF 64
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVS 117
S I+ ++A F++G P + S P + F+ ++ + + + FWDE T+ +
Sbjct: 65 QSLISELSLAGFVVGYPFDRQRS-TPDALHVKLFIDDLRKIGKLEGLKYTFWDECFTSKN 123
Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ ++ +++ + +D AA ILQ LD ++
Sbjct: 124 VELLVQPLDLHPVEAKTIMDKFAAVGILQGYLDYVN 159
>gi|111073618|emb|CAL29481.1| hypothetical protein OW3-C [Wolbachia endosymbiont of Onchocerca
volvulus]
Length = 136
Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G K+IG+A SD + A RK +++ L + +IGLPL
Sbjct: 1 MCLDMGKKQIGIAFSDKTQLIATAHSIYNRKNISKDLGYLNRVFKENEAGSVVIGLPLET 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
N + F M+ + V DE L+T A L VS K + D I
Sbjct: 61 NRKSSEWYETIIQFATKMVKK-YKVNIYLQDESLSTFIAIHTLKTAGVSITKSKKIDDKI 119
Query: 140 AAALILQEVLDRISFLE 156
+A +ILQ LD+I+ ++
Sbjct: 120 SACIILQRTLDKINAIK 136
>gi|53803468|ref|YP_114751.1| hypothetical protein MCA2335 [Methylococcus capsulatus str. Bath]
gi|62900953|sp|Q605E9|RUVX_METCA RecName: Full=Putative Holliday junction resolvase
gi|53757229|gb|AAU91520.1| conserved hypothetical protein TIGR00250 [Methylococcus capsulatus
str. Bath]
Length = 151
Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 51/139 (36%), Gaps = 6/139 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
D G + IG+A+ A P L + + + I A ++
Sbjct: 8 SRGATYLGFDFGERNIGVAVGQSVTGTAAPLRTLRAQPSARLWAAISELIDQWLPAGLVV 67
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR- 132
GL +GSE P T F + + + +P DE LTT A+ R+K
Sbjct: 68 GLSHQQDGSENPITAPTLRFCRQL-EGRYRLPVYTVDETLTT--AESRTHFYQRRRRKSV 124
Query: 133 --IQKVDSIAAALILQEVL 149
Q D +AA LILQ
Sbjct: 125 EFEQVKDEMAAQLILQTWF 143
>gi|255535831|ref|YP_003096202.1| Putative Holliday junction resolvase [Flavobacteriaceae bacterium
3519-10]
gi|255342027|gb|ACU08140.1| Putative Holliday junction resolvase [Flavobacteriaceae bacterium
3519-10]
Length = 141
Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 5/141 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++ I ++D G R G+A +D + A + K + L + N+ +
Sbjct: 1 MRTMAQILAVDYGKARCGIAATDDFQIIASGLDTVETKNIFTF---LAGYFAANNVELVV 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP ++ G+ F+ + V +DER T+ A + ++KKR
Sbjct: 58 VGLPTDLKGNLSSIETDIAKFLEKFKTQFPTVKTERFDERFTSKMASFYISQSGKNKKKR 117
Query: 133 --IQKVDSIAAALILQEVLDR 151
+D ++A LILQ L++
Sbjct: 118 EEKGLIDKVSATLILQNFLEQ 138
>gi|115440129|ref|NP_001044344.1| Os01g0764700 [Oryza sativa Japonica Group]
gi|57899566|dbj|BAD87145.1| unknown protein [Oryza sativa Japonica Group]
gi|113533875|dbj|BAF06258.1| Os01g0764700 [Oryza sativa Japonica Group]
gi|215701312|dbj|BAG92736.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 178
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 10/163 (6%)
Query: 1 MSILLIEDLVKS-----LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55
M +L + L + + + +D+G+K +GLA+SD R A P L R K +
Sbjct: 1 MRLLKADQLFRKVIDGGWRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60
Query: 56 --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
A + ++ ++ ++A F++G P N+ G P R V + + + + +WDE
Sbjct: 61 LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120
Query: 112 RLTTVSAQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153
T+ + +L + + + D AA ILQ LD ++
Sbjct: 121 NFTSKCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMN 163
>gi|28199161|ref|NP_779475.1| Holliday junction resolvase-like protein [Xylella fastidiosa
Temecula1]
gi|182681892|ref|YP_001830052.1| Holliday junction resolvase-like protein [Xylella fastidiosa M23]
gi|54039590|sp|P67497|RUVX_XYLFT RecName: Full=Putative Holliday junction resolvase
gi|54042294|sp|P67496|RUVX_XYLFA RecName: Full=Putative Holliday junction resolvase
gi|226695318|sp|B2I5Y9|RUVX_XYLF2 RecName: Full=Putative Holliday junction resolvase
gi|28057259|gb|AAO29124.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
gi|182632002|gb|ACB92778.1| Holliday junction resolvase YqgF [Xylella fastidiosa M23]
gi|307578146|gb|ADN62115.1| Holliday junction resolvase-like protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 155
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 4/138 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + D+GT+RIG+A+ A + V L ++G
Sbjct: 9 PDGIVLGFDVGTRRIGVAVGSALGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKK 131
PL + G + P AF + +R +P V DER ++V A R++
Sbjct: 69 DPLTLEGHDQPIRKQAHAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127
Query: 132 RIQKVDSIAAALILQEVL 149
+D+IAAA+IL+ L
Sbjct: 128 DADTLDAIAAAVILERWL 145
>gi|171463061|ref|YP_001797174.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|226731636|sp|B1XT83|RUVX_POLNS RecName: Full=Putative Holliday junction resolvase
gi|171192599|gb|ACB43560.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 147
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 58/145 (40%), Gaps = 14/145 (9%)
Query: 13 LKPNQPI-----ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
LKP I + D GT+R+G+A+ + + P + ++ +
Sbjct: 2 LKPMALITPITAMAFDYGTRRVGVAVGNSVTKAGEPLKTIAAPNSDTLFKDIEQLLAEWQ 61
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
++G P + +G+ F + + R +P + DER T+ +++ +
Sbjct: 62 PNQLVVGHPTHPDGAPHEMTAKAIRFGNQLHGR-FQLPVAWVDERYTS-----AVLEGD- 114
Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152
+ +D+ +A LIL++ +
Sbjct: 115 --AQMRDNLDAHSATLILEQYFSEL 137
>gi|15835074|ref|NP_296833.1| Holliday junction resolvase-like protein [Chlamydia muridarum Nigg]
gi|14195475|sp|Q9PKK9|RUVX_CHLMU RecName: Full=Putative Holliday junction resolvase
gi|7190501|gb|AAF39309.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
Length = 148
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 2/146 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENI 68
+ S+K + +D G KRIGLA + P + + TA L++ I +
Sbjct: 1 MNSMKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAV 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV 127
+ G PL M S V S + ++ + + WDERL++ A+++L D +
Sbjct: 61 TTVVFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGL 120
Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
SRK+R DS+AA LIL LD
Sbjct: 121 SRKQRKNSSDSLAATLILSSFLDSRK 146
>gi|83814264|ref|YP_445196.1| hypothetical protein SRU_1064 [Salinibacter ruber DSM 13855]
gi|294507080|ref|YP_003571138.1| Holliday junction resolvase [Salinibacter ruber M8]
gi|126352257|sp|Q2S3N5|RUVX_SALRD RecName: Full=Putative Holliday junction resolvase
gi|83755658|gb|ABC43771.1| conserved hypothetical protein TIGR00250 [Salinibacter ruber DSM
13855]
gi|294343408|emb|CBH24186.1| Putative Holliday junction resolvase [Salinibacter ruber M8]
Length = 143
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ +L + ID+GTKR+G+A++DP R FA P + L + + IA
Sbjct: 1 MSTLSSEARVVGIDVGTKRVGVAVADPLRLFAQPHGTYA---PDEALDVLQALRDADGIA 57
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS- 128
++G PL G+ A+V + + V DER T+ A+ +L + VS
Sbjct: 58 RIVVGWPLTEEGTAEEATEMVEAYVERIREALGTVEVAREDERYTSEIAKDLLREAGVSQ 117
Query: 129 -RKKRIQKVDSIAAALILQEVLDR 151
+ +VD+ AAA+ILQ L+R
Sbjct: 118 PGRYDKGRVDAAAAAVILQGFLNR 141
>gi|313207140|ref|YP_004046317.1| holliday junction resolvase yqgf [Riemerella anatipestifer DSM
15868]
gi|312446456|gb|ADQ82811.1| Holliday junction resolvase YqgF [Riemerella anatipestifer DSM
15868]
gi|315022462|gb|EFT35489.1| Putative Holliday junction resolvase [Riemerella anatipestifer
RA-YM]
Length = 137
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G R G+A +D + A + ++ L +I + A ++G
Sbjct: 1 MGQILAIDYGKARTGIAATDDMKLIASGLASVPTGELLSF---LSEYIHNNAVEAVVVGY 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+++ G+ S F+ + + DER T+ A + ++K+R +K
Sbjct: 58 PVDLKGNVSEVETSILEFIEKFKVQFPEIEVHRLDERFTSKMASFFISQSGKNKKQRQEK 117
Query: 136 --VDSIAAALILQEVLDRIS 153
+D I+A +ILQ L++
Sbjct: 118 GLIDKISATIILQNFLEQKR 137
>gi|126696190|ref|YP_001091076.1| endonuclease [Prochlorococcus marinus str. MIT 9301]
gi|167012746|sp|A3PCK0|RUVX_PROM0 RecName: Full=Putative Holliday junction resolvase
gi|126543233|gb|ABO17475.1| Predicted endonuclease [Prochlorococcus marinus str. MIT 9301]
Length = 153
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+K KP + I S+D+G+KRIGLA DP ++ P + R + Q + ++I N+
Sbjct: 1 MKFCKPKPKSILSLDIGSKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
FI+G+PL+ G + + + ++ ++ +PF + +E +T + +
Sbjct: 61 TGFIVGIPLDEKGKMTTQAIDCKNYGQ-LLSNELKLPFSYVNEHSSTWESSERF----GI 115
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+K + +DS +A +IL++ ++ LE G
Sbjct: 116 KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147
>gi|330444557|ref|YP_004377543.1| hypothetical protein G5S_0903 [Chlamydophila pecorum E58]
gi|328807667|gb|AEB41840.1| conserved hypothetical protein TIGR00250 [Chlamydophila pecorum
E58]
Length = 146
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78
+D G KR+GLA + + P + R K + L I +++ I+G P+
Sbjct: 11 LGVDYGLKRVGLACASAPLFLSVPIGTVERGKNLDVIVTTLRKIIVERHVSCVILGNPIP 70
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQKVD 137
M G++ + A + + + WDERL++ A+++L D +SRK+R K D
Sbjct: 71 MYGNQVSALQEEIAIFAKKLKEATCIEVILWDERLSSAQAERMLKHDCGLSRKQRKGKTD 130
Query: 138 SIAAALILQEVLDRI 152
++AA LIL L+R
Sbjct: 131 TLAATLILSSFLERC 145
>gi|218294685|ref|ZP_03495539.1| Holliday junction resolvase YqgF [Thermus aquaticus Y51MC23]
gi|218244593|gb|EED11117.1| Holliday junction resolvase YqgF [Thermus aquaticus Y51MC23]
Length = 135
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D+G RIGLA+ + G FA R +LVR+ + + LL F+ E +A I+GLPL
Sbjct: 2 RLGALDVGEARIGLAVGEEGLPFAFGRGYLVRRSLEEDVEALLDFVRREGLAKLIVGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ E + V + R V WDER TT +A L ++ K+D
Sbjct: 62 RTDLKESAQAKRVLPLVEALRAR--GVEVELWDERYTTKAAMARLRHAPRRVREDKGKLD 119
Query: 138 SIAAALILQEVLDR 151
++A ++L+ L R
Sbjct: 120 EMSAVVLLEGYLAR 133
>gi|46199780|ref|YP_005447.1| yqgf-family protein [Thermus thermophilus HB27]
gi|55981798|ref|YP_145095.1| hypothetical protein TTHA1829 [Thermus thermophilus HB8]
gi|62900932|sp|Q5SHA1|RUVX_THET8 RecName: Full=Putative Holliday junction resolvase
gi|62900992|sp|Q72HK9|RUVX_THET2 RecName: Full=Putative Holliday junction resolvase
gi|46197407|gb|AAS81820.1| yqgf-Family protein [Thermus thermophilus HB27]
gi|55773211|dbj|BAD71652.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 135
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D+G RIGLA+ + G A R +LVRK + + LL F+ E + ++GLPL
Sbjct: 2 RVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ E + V + R V WDER TT AQ+ L ++ K+D
Sbjct: 62 RTDLKESAQAGKVLPLVEALRAR--GVEVELWDERFTTKLAQERLKHAPKRLRRDKGKLD 119
Query: 138 SIAAALILQEVLDR 151
+AA ++L++ L R
Sbjct: 120 ELAAVVLLEDYLAR 133
>gi|15838818|ref|NP_299506.1| Holliday junction resolvase-like protein [Xylella fastidiosa 9a5c]
gi|9107376|gb|AAF85026.1|AE004035_5 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 155
Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + D+GT+RIG+A+ A + V L ++G
Sbjct: 9 PDGIVLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKK 131
PL + G + P +AF + +R +P V DER ++V A R++
Sbjct: 69 DPLTLEGHDQPIRKQAQAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127
Query: 132 RIQKVDSIAAALILQEVL 149
+D+IAAA+IL+ L
Sbjct: 128 DADTLDAIAAAVILERWL 145
>gi|157413221|ref|YP_001484087.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
9215]
gi|167012748|sp|A8G4H0|RUVX_PROM2 RecName: Full=Putative Holliday junction resolvase
gi|157387796|gb|ABV50501.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
9215]
Length = 153
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+K KP + I S+D+G KRIGLA DP ++ P + R K Q + ++I N+
Sbjct: 1 MKFCKPKPKSILSLDIGNKRIGLAYCDPLCITSNILPAVKRFKNNQEIKIIRNYINEYNL 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
FI+G+PL+ G + + + ++ ++ +PF F +E +T +
Sbjct: 61 TGFIVGIPLDERGQMTTQAIDCKNYGQ-LLSYELRLPFSFVNEHSSTWESSNRF----GI 115
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+K + +DS +A +IL++ ++ LE G
Sbjct: 116 KKDKSGLIDSFSAKIILEQWIEEGPELEEIAG 147
>gi|167957612|ref|ZP_02544686.1| Holliday junction resolvase YqgF [candidate division TM7
single-cell isolate TM7c]
Length = 134
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D+G KRIG+A++D G + A P + ++L EN ++G P
Sbjct: 4 RLLCLDVGEKRIGVAVADLGVKIAIPLTTIEVDGTE--IEQILRLYGRENARTLVVGYPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
N G + FV + + Y+ F DE LT+V A+Q L + +D
Sbjct: 62 NQQGETTAQTVFVEEFVKPLEE---YINIEFQDESLTSVQAEQRLKSRG--QNYTKGDID 116
Query: 138 SIAAALILQEVLD 150
S AA +ILQ+ ++
Sbjct: 117 SEAATIILQDYME 129
>gi|148909523|gb|ABR17857.1| unknown [Picea sitchensis]
Length = 178
Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
+ +D+G + +GLA+S+ A P L+RK+ + +L + ++ F+IG
Sbjct: 22 GRLLGMDVGDRYVGLAVSNHLNEIASPHSVLIRKQSNIDSITDKLQELVRRFSLVGFVIG 81
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
PL + + + + FV + R + + +WDERLTT + + +L + + +
Sbjct: 82 YPLPLYHFQRSQAMQVKMFVEQLQKTGRFGCLNYTYWDERLTTRAVESMLKPLKIHPLQM 141
Query: 133 IQKVDSIAAALILQEVLDRISF 154
+D AA ILQ+ LD +
Sbjct: 142 KHMMDKFAAVGILQDFLDNLQH 163
>gi|319795847|ref|YP_004157487.1| holliday junction resolvase yqgf [Variovorax paradoxus EPS]
gi|315598310|gb|ADU39376.1| Holliday junction resolvase YqgF [Variovorax paradoxus EPS]
Length = 141
Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 13/138 (9%)
Query: 13 LKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ P+ Q + D G KR G+A + + A P+ + + ++ + I A
Sbjct: 12 VPPHFQTFLAFDFGLKRTGVASGNRLLQSATPQATIKAE-GDARFAQVEARIKEWQPDAL 70
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+IG+P + +G+ + F + R + DER +T A +S
Sbjct: 71 VIGVPYHPDGAPHENTRRAQKFARQLRGR-FNLQVFEVDERYSTTEA--------LSSGA 121
Query: 132 RIQKVDSIAAALILQEVL 149
R D+ +A +IL++ L
Sbjct: 122 RDA--DAASACIILEQFL 137
>gi|284032273|ref|YP_003382204.1| Holliday junction resolvase YqgF [Kribbella flavida DSM 17836]
gi|283811566|gb|ADB33405.1| Holliday junction resolvase YqgF [Kribbella flavida DSM 17836]
Length = 152
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G RIG+A SDP A P + R +++ + ++GLP ++
Sbjct: 7 VALDIGDARIGVASSDPHGILATPVETVRR--GPGDLDRIVTLVADLEAFEIVVGLPRSL 64
Query: 80 NGSEGPRVHSTRAFVHN----MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
NG EGP RA + R+V DER TTV+A+++L + KR
Sbjct: 65 NGGEGPAAVKIRATAEQVRQLVAARQVDTEVRLVDERFTTVTAERMLRERGKKGSKRRAV 124
Query: 136 VDSIAAALILQEVLD 150
VD AA +ILQ LD
Sbjct: 125 VDQAAAVVILQHALD 139
>gi|311103825|ref|YP_003976678.1| holliday junction resolvase-like protein [Achromobacter
xylosoxidans A8]
gi|310758514|gb|ADP13963.1| holliday junction resolvase-like protein [Achromobacter
xylosoxidans A8]
Length = 133
Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 9/140 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + R A P + + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSEVREARFGRIAALLQEWQPHRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L L+ G E P R F + + R + DER +++ AQ++L
Sbjct: 62 LALDAEGGEQPATARCRRFANQLHGR-FGLAVELVDERGSSMEAQRLLGTHAADDAMAAA 120
Query: 135 KVDSIAAALILQEVLDRISF 154
ILQ LD +
Sbjct: 121 V--------ILQRYLDTLPA 132
>gi|293603244|ref|ZP_06685676.1| crossover junction endodeoxyribonuclease [Achromobacter piechaudii
ATCC 43553]
gi|292818376|gb|EFF77425.1| crossover junction endodeoxyribonuclease [Achromobacter piechaudii
ATCC 43553]
Length = 136
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 9/140 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G K+IG+AI + R A P + + + + + ++G
Sbjct: 5 PEETLLGFDFGEKKIGIAIGNTLTRQARPLEIIFSEIRDARFGRIAALLQEWQPHRVVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L L+ +G E R F + + R + DER +++ AQ++L
Sbjct: 65 LALDADGGEQAATARCRRFANQLHGR-FGIAVELVDERGSSMEAQRLLGTHAADDAMAAA 123
Query: 135 KVDSIAAALILQEVLDRISF 154
ILQ LD +
Sbjct: 124 V--------ILQRYLDTLPA 135
>gi|237654352|ref|YP_002890666.1| Holliday junction resolvase-like protein [Thauera sp. MZ1T]
gi|237625599|gb|ACR02289.1| Holliday junction resolvase YqgF [Thauera sp. MZ1T]
Length = 168
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 2/145 (1%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+L + D G RIG+A + A + + + I A
Sbjct: 22 DTLPARGTVLGFDFGLARIGVASGELETGLASALTTVHAEANDARFAAIARLIAEWRPVA 81
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR- 129
++G+P +++G E R F + + R +P DERL++V+A+ L +
Sbjct: 82 LVVGIPTHLDGREHELTARCRRFANQLHGRHA-LPVFTADERLSSVAAEAELAEAGRKDW 140
Query: 130 KKRIQKVDSIAAALILQEVLDRISF 154
++R +D+ AA ++LQ LD
Sbjct: 141 RERKAALDAAAARILLQTFLDTRRH 165
>gi|296114061|ref|YP_003627999.1| putative holliday junction resolvase [Moraxella catarrhalis RH4]
gi|295921755|gb|ADG62106.1| putative holliday junction resolvase [Moraxella catarrhalis RH4]
gi|326559452|gb|EGE09875.1| putative Holliday junction resolvase [Moraxella catarrhalis 7169]
gi|326561286|gb|EGE11645.1| putative Holliday junction resolvase [Moraxella catarrhalis
46P47B1]
gi|326565174|gb|EGE15365.1| putative Holliday junction resolvase [Moraxella catarrhalis
103P14B1]
gi|326566128|gb|EGE16285.1| putative Holliday junction resolvase [Moraxella catarrhalis BC1]
gi|326567831|gb|EGE17935.1| putative Holliday junction resolvase [Moraxella catarrhalis
12P80B1]
gi|326568167|gb|EGE18249.1| putative Holliday junction resolvase [Moraxella catarrhalis BC8]
gi|326572195|gb|EGE22191.1| putative Holliday junction resolvase [Moraxella catarrhalis BC7]
gi|326572810|gb|EGE22795.1| putative Holliday junction resolvase [Moraxella catarrhalis CO72]
gi|326573746|gb|EGE23704.1| putative Holliday junction resolvase [Moraxella catarrhalis O35E]
gi|326574629|gb|EGE24565.1| putative Holliday junction resolvase [Moraxella catarrhalis
101P30B1]
Length = 158
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D G K++G+A+ + A P L LL I I ++GLPLNM
Sbjct: 8 LALDYGVKKMGMALGNSITHNARPFDILAMNNGQPDWDNLLGIIEHWGIDRVLVGLPLNM 67
Query: 80 NGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+G+E F + +R+ V +DERL++ A+ I +D +
Sbjct: 68 DGTESMLTKRAHKFARRLAHRLGERRQAVSVFIYDERLSSKEAKMIALDNGWI-ASSSEP 126
Query: 136 VDSIAAALILQEV 148
+D IAA L+L
Sbjct: 127 IDDIAACLLLDSY 139
>gi|256371740|ref|YP_003109564.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM
10331]
gi|256008324|gb|ACU53891.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM
10331]
Length = 138
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+DLGTKRIG+A+ A P + + + L + + + ++GL
Sbjct: 6 GGRALGVDLGTKRIGVAV--AEGSLALPLEVIDARGPWR--ARLAELVASVGASVVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ ++GSEG R + + + + VP VF DERL++ +A++ L V + R
Sbjct: 62 PIGLDGSEGRAAARVRQWSEGLAE-HLEVPVVFVDERLSSQAAERRLGAAGVDARSRRGA 120
Query: 136 VDSIAAALILQEVL 149
VD+ AA IL+ L
Sbjct: 121 VDAFAATEILERWL 134
>gi|15604904|ref|NP_219688.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
D/UW-3/CX]
gi|76788906|ref|YP_327992.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
A/HAR-13]
gi|237802608|ref|YP_002887802.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
B/Jali20/OT]
gi|237804530|ref|YP_002888684.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255310984|ref|ZP_05353554.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
6276]
gi|255317285|ref|ZP_05358531.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
6276s]
gi|6226795|sp|Q46370|RUVX_CHLTR RecName: Full=Putative Holliday junction resolvase
gi|146325562|sp|Q3KMH8|RUVX_CHLTA RecName: Full=Putative Holliday junction resolvase
gi|3328589|gb|AAC67776.1| YqgF Family [Chlamydia trachomatis D/UW-3/CX]
gi|76167436|gb|AAX50444.1| hypothetical cytosolic protein [Chlamydia trachomatis A/HAR-13]
gi|231272830|emb|CAX09739.1| putative Holliday junction resolvase [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231273842|emb|CAX10632.1| putative Holliday junction resolvase [Chlamydia trachomatis
B/Jali20/OT]
gi|296435699|gb|ADH17873.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
G/9768]
gi|296436623|gb|ADH18793.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
G/11222]
gi|296437559|gb|ADH19720.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
G/11074]
gi|297140058|gb|ADH96816.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
G/9301]
gi|297748314|gb|ADI50860.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-EC]
gi|297749194|gb|ADI51872.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-LC]
Length = 148
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFI 72
K Q ID G KRIGLA + P + R +T TA L+S I + +
Sbjct: 5 KQQQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAVTTVV 64
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131
G PL M + V S + +I + + WDERL++ A+++L D ++RK+
Sbjct: 65 FGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLNRKQ 124
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
R DS+AA LIL LD
Sbjct: 125 RKNPSDSLAATLILSSFLDSRK 146
>gi|71274448|ref|ZP_00650736.1| Conserved hypothetical protein 250 [Xylella fastidiosa Dixon]
gi|71898425|ref|ZP_00680597.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
gi|71900444|ref|ZP_00682576.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
gi|170730547|ref|YP_001775980.1| Holliday junction resolvase-like protein [Xylella fastidiosa M12]
gi|226695319|sp|B0U3C1|RUVX_XYLFM RecName: Full=Putative Holliday junction resolvase
gi|71164180|gb|EAO13894.1| Conserved hypothetical protein 250 [Xylella fastidiosa Dixon]
gi|71729809|gb|EAO31908.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
gi|71731738|gb|EAO33797.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
gi|167965340|gb|ACA12350.1| putative Holliday junction resolvase [Xylella fastidiosa M12]
Length = 155
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 4/138 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + D+GT+RIG+A+ A + V L ++G
Sbjct: 9 PDGIVLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKK 131
PL + G + P AF + +R +P V DER ++V A R++
Sbjct: 69 DPLTLEGHDQPIRKQAHAFACQLRER-YRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127
Query: 132 RIQKVDSIAAALILQEVL 149
+D+IAAA+IL+ L
Sbjct: 128 DADTLDAIAAAVILERWL 145
>gi|270285241|ref|ZP_06194635.1| Holliday junction resolvase-like protein [Chlamydia muridarum Nigg]
gi|270289260|ref|ZP_06195562.1| Holliday junction resolvase-like protein [Chlamydia muridarum
Weiss]
gi|301336637|ref|ZP_07224839.1| Holliday junction resolvase-like protein [Chlamydia muridarum
MopnTet14]
Length = 145
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 2/143 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAF 71
+K + +D G KRIGLA + P + + TA L++ I +
Sbjct: 1 MKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAVTTV 60
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRK 130
+ G PL M S V S + ++ + + WDERL++ A+++L D +SRK
Sbjct: 61 VFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGLSRK 120
Query: 131 KRIQKVDSIAAALILQEVLDRIS 153
+R DS+AA LIL LD
Sbjct: 121 QRKNSSDSLAATLILSSFLDSRK 143
>gi|166154394|ref|YP_001654512.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
434/Bu]
gi|166155269|ref|YP_001653524.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|255348541|ref|ZP_05380548.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 70]
gi|255503081|ref|ZP_05381471.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
70s]
gi|255506759|ref|ZP_05382398.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
D(s)2923]
gi|301335653|ref|ZP_07223897.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
L2tet1]
gi|226725500|sp|B0B9T4|RUVX_CHLT2 RecName: Full=Putative Holliday junction resolvase
gi|226725501|sp|B0BBG4|RUVX_CHLTB RecName: Full=Putative Holliday junction resolvase
gi|558088|gb|AAA80196.1| unknown [Chlamydia trachomatis]
gi|165930382|emb|CAP03875.1| putative Holliday junction resolvase [Chlamydia trachomatis 434/Bu]
gi|165931257|emb|CAP06829.1| putative Holliday junction resolvase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|289525222|emb|CBJ14698.1| putative Holliday junction resolvase [Chlamydia trachomatis
Sweden2]
gi|296434770|gb|ADH16948.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
E/150]
gi|296438490|gb|ADH20643.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
E/11023]
Length = 148
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV-RKKVTQTALELLSFITTENIAAFI 72
K Q ID G KRIGLA + P + R +T TA L+S I + +
Sbjct: 5 KQQQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAVTTVV 64
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131
G PL M + V S + +I + + WDERL++ A+++L D ++RK+
Sbjct: 65 FGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGLNRKQ 124
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
R DS+AA LIL LD
Sbjct: 125 RKNSSDSLAATLILSSFLDSRK 146
>gi|121997730|ref|YP_001002517.1| Holliday junction resolvase YqgF [Halorhodospira halophila SL1]
gi|121589135|gb|ABM61715.1| Holliday junction resolvase YqgF [Halorhodospira halophila SL1]
Length = 142
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 1/116 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
P + D G + IG+A+ + A L + + + A ++
Sbjct: 4 PPGGTLLGFDPGARHIGVAVGEALLGTARGLTTLPARHGQPDWEAVSELLAQWTPEALVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
GLP + +GS+ R + R +P DERL++ A++ L R
Sbjct: 64 GLPSHADGSDADSTELARRLAGRLHGR-FGLPVHTVDERLSSHVAEERLDPRQRQR 118
>gi|284931131|gb|ADC31069.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
F]
Length = 142
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 8/140 (5%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-----AFIIG 74
++D+G+K +G+A D + A P + + + L+ + + + F+IG
Sbjct: 4 VALDVGSKTLGIATGDGEFKIASPYCVISFNQY--DFKQCLAELKEKTASFFYDFKFVIG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+P N++ ++ F+ ++ + +DE T++ A Q+LID + KKR +
Sbjct: 62 MPKNIDQTKSSTTEMVENFIE-LLKANYKNEVIIYDESYTSIIADQLLIDNQIKAKKRKE 120
Query: 135 KVDSIAAALILQEVLDRISF 154
K+D +AA +ILQ D +
Sbjct: 121 KIDKLAAFVILQSFFDDDRY 140
>gi|241764785|ref|ZP_04762793.1| Holliday junction resolvase YqgF [Acidovorax delafieldii 2AN]
gi|241365715|gb|EER60411.1| Holliday junction resolvase YqgF [Acidovorax delafieldii 2AN]
Length = 143
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A + A P+P + + ++ I A +IG+P
Sbjct: 19 QTFLAFDFGLKRTGVATGSRLLKSATPQPTIKAE-GDARFAQVAQRIKEWQPDALVIGVP 77
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + R + DER +T A I
Sbjct: 78 YHPDGASHENTERALKFGRQLRGR-FGLQVFEVDERYSTTEA----IASGAKDA------ 126
Query: 137 DSIAAALILQEVL 149
D+ +A +IL++ L
Sbjct: 127 DAASACIILEQFL 139
>gi|260220095|emb|CBA27290.1| Putative Holliday junction resolvase [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 147
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 13/145 (8%)
Query: 6 IEDLVKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
+ D + P + D G KR G+A+ + R A P+ + + + + +
Sbjct: 11 MSDATPLVPPAFTTFIAFDFGLKRTGVAVGNRLMRTAQPQGSIHAE-GNARFDGVAAKLK 69
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
A +IG+P + +G+ + F + R + DER +T A I
Sbjct: 70 EWQPDAIVIGVPYHPDGAPHENTARAKKFGRQLQGR-FGLQVFEVDERYSTTEA----IA 124
Query: 125 MNVSRKKRIQKVDSIAAALILQEVL 149
D+++A +IL++ L
Sbjct: 125 SGAKDA------DAMSACIILEQFL 143
>gi|15618161|ref|NP_224446.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
CWL029]
gi|15835772|ref|NP_300296.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
J138]
gi|33241578|ref|NP_876519.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
TW-183]
gi|6226490|sp|Q9Z8U7|RUVX_CHLPN RecName: Full=Putative Holliday junction resolvase
gi|4376511|gb|AAD18390.1| YggF Family hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|8978610|dbj|BAA98447.1| YggF family hypothetical protein [Chlamydophila pneumoniae J138]
gi|33236086|gb|AAP98176.1| hypothetical protein CpB0243 [Chlamydophila pneumoniae TW-183]
gi|269303113|gb|ACZ33213.1| conserved hypothetical protein TIGR00250 [Chlamydophila pneumoniae
LPCoLN]
Length = 151
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 4/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
+ ID G KRIGLA + P + K + +A L I + NI ++G
Sbjct: 8 KAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITCVVLGN 67
Query: 76 PLNMN-GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133
PL M G + + V + WDERL++V A+++L D +SRK R
Sbjct: 68 PLPMQKGLYSSLQEEVSLLAEEL-KKLSTVEIILWDERLSSVQAERMLKQDCGLSRKDRK 126
Query: 134 QKVDSIAAALILQEVLDRIS 153
K DS+AA LIL LD +
Sbjct: 127 GKTDSLAATLILTSFLDSLP 146
>gi|197294553|ref|YP_001799094.1| Holliday junction resolvase-like protein [Candidatus Phytoplasma
australiense]
gi|171853880|emb|CAM11842.1| Putative holliday junction resolvase [Candidatus Phytoplasma
australiense]
Length = 140
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG K +G+A+S A L + Q L I I I+G P
Sbjct: 1 MGLDLGEKTLGIALS-ETGIIAQKLKTLFFPVNQYKQLIKPLKEIIDYYKIKTIILGYPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+MN G + + F + V + WDERL+TV + +IL N +KK D
Sbjct: 60 HMNNDIGIKAQISIKFKEILETNFPLVKVILWDERLSTVQSIKILRQNNKKKKKIKTLKD 119
Query: 138 SIAAALILQEVLD 150
IAA +ILQ LD
Sbjct: 120 VIAATIILQNYLD 132
>gi|62185187|ref|YP_219972.1| Holliday junction resolvase-like protein [Chlamydophila abortus
S26/3]
gi|81312649|sp|Q5L5S0|RUVX_CHLAB RecName: Full=Putative Holliday junction resolvase
gi|62148254|emb|CAH64019.1| putative Holliday junction resolvase [Chlamydophila abortus S26/3]
Length = 150
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 20 ASIDLGTKRIGLA-------ISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+D G +RIGLA IS P A K + TA L+ I ++ +
Sbjct: 11 LGVDYGERRIGLAYAAYPLGISLPIGFIATG------KTLEATAKLLVGIIQERRVSTVV 64
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKK 131
+G PL M + + + +++ V + WDERL++ A+++L D +SRKK
Sbjct: 65 LGNPLPMQKGQKSALQEDILKLSSLLQESCPVEVILWDERLSSAQAERMLKGDCGLSRKK 124
Query: 132 RIQKVDSIAAALILQEVLDRISFLES 157
R K DSIAA LIL L+ L S
Sbjct: 125 RKGKTDSIAATLILTSFLEHSPRLPS 150
>gi|326315675|ref|YP_004233347.1| Holliday junction resolvase YqgF [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323372511|gb|ADX44780.1| Holliday junction resolvase YqgF [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 150
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 11/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A+ R A P+ + + + + A ++G+P
Sbjct: 25 QSFLAFDFGAKRTGVAVGTRMLRTATPQATIRAEGADARFAAVAERLRDWQPDALVVGVP 84
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + R +P DER +T A +
Sbjct: 85 YHPDGAAHENTARALKFARQLRGR-FGLPVFEVDERYSTTEAHAGGAKDADAA------- 136
Query: 137 DSIAAALILQEVLDRIS 153
+A +IL++ L ++
Sbjct: 137 ---SACIILEQFLRQLP 150
>gi|124025538|ref|YP_001014654.1| endonuclease [Prochlorococcus marinus str. NATL1A]
gi|167012747|sp|A2C1M9|RUVX_PROM1 RecName: Full=Putative Holliday junction resolvase
gi|123960606|gb|ABM75389.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. NATL1A]
Length = 144
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ S+D+G KRIG+A DP P + R + E + I G PL
Sbjct: 8 SVLSLDIGDKRIGIAGCDPLGISITHLPAIFRDSFEKDLKEFEKICFDRRVEGLICGNPL 67
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+MNG E + + + + + +P F +E +T+ A++ + + ++D
Sbjct: 68 DMNGMETKQSIRCKKYGIKLAK-CLKLPLAFINEHCSTLEAKEKFS----LKNDKTGRLD 122
Query: 138 SIAAALILQEVL 149
S AAA++LQ+ L
Sbjct: 123 SAAAAILLQQWL 134
>gi|16752801|ref|NP_445069.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
AR39]
gi|7189439|gb|AAF38349.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
Length = 154
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 4/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
+ ID G KRIGLA + P + K + +A L I + NI ++G
Sbjct: 11 KAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITCVVLGN 70
Query: 76 PLNMN-GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133
PL M G + + V + WDERL++V A+++L D +SRK R
Sbjct: 71 PLPMQKGLYSSLQEEVSLLAEEL-KKLSTVEIILWDERLSSVQAERMLKQDCGLSRKDRK 129
Query: 134 QKVDSIAAALILQEVLDRIS 153
K DS+AA LIL LD +
Sbjct: 130 GKTDSLAATLILTSFLDSLP 149
>gi|239817577|ref|YP_002946487.1| Holliday junction resolvase-like protein [Variovorax paradoxus
S110]
gi|239804154|gb|ACS21221.1| Holliday junction resolvase YqgF [Variovorax paradoxus S110]
Length = 153
Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 12/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A + A P+ + + ++ + I A ++G+P
Sbjct: 29 QSFLAFDFGLKRTGVASGNRLLGAATPQATIKAE-GDARFAQVEARIKEWQPDALVVGVP 87
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ + F + R + DER +T A +
Sbjct: 88 YHPDGAPHENTRRAQKFARQLRGR-FNLQVFEVDERYSTTEA----LASGARDA------ 136
Query: 137 DSIAAALILQEVLDRIS 153
D+ +A +IL++ L I
Sbjct: 137 DAASACIILEQFLRSIP 153
>gi|328676957|gb|AEB27827.1| Putative Holliday junction resolvase [Francisella cf. novicida Fx1]
Length = 136
Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E + + F I ++ +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQNFETDITKAAKDFAKE-IQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|302541104|ref|ZP_07293446.1| putative Holliday junction resolvase [Streptomyces hygroscopicus
ATCC 53653]
gi|302458722|gb|EFL21815.1| putative Holliday junction resolvase [Streptomyces himastatinicus
ATCC 53653]
Length = 124
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 49/116 (42%)
Query: 45 PFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
+ + + L + + +IGLP ++NG EGP R F + R V
Sbjct: 2 ETVPGRDIPAAHKRLAAIVAEYEPIEVVIGLPRSLNGREGPAAAKVRTFARELARRVQPV 61
Query: 105 PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
DER+TTV+A L VS KK VD AA +ILQ L+ + G
Sbjct: 62 SVRLVDERMTTVTAAHGLRASGVSSKKGRSVVDQAAAVVILQSALETERASGRAPG 117
>gi|289209567|ref|YP_003461633.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. K90mix]
gi|288945198|gb|ADC72897.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. K90mix]
Length = 130
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G +RIG+A+ + A L + + ++ F++G P
Sbjct: 3 LLAFDYGRRRIGIAVGEELTGAARGLRTL-NTDSPELWPVIDRLVSEWAPEGFVVGWPTQ 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G P RAF + + + P ++DE LT+ A++ R + +D+
Sbjct: 62 ADGKPTPLAKRIRAFGAAL-EARYNQPVYWYDEHLTSHLARER-----SGRGRHDPGLDA 115
Query: 139 IAAALILQEVL 149
AAA+IL+
Sbjct: 116 HAAAVILEGWF 126
>gi|268679508|ref|YP_003303939.1| Holliday junction resolvase YqgF [Sulfurospirillum deleyianum DSM
6946]
gi|268617539|gb|ACZ11904.1| Holliday junction resolvase YqgF [Sulfurospirillum deleyianum DSM
6946]
Length = 135
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ IAS+D+G KRIG+A+ P+ ++RK Q A E+ +F+T I ++GL
Sbjct: 1 MKKIASLDVGLKRIGVALCLASG-IVTPQEAILRKNRDQAAREVDAFLTEWEIELLVVGL 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + SE FV + V+ DE +++ A++++ + R+KR K
Sbjct: 60 PKGGS-SEEEMKRRITHFVSLLA---FSGEVVYQDEYGSSLEAKEMM--QGIMRQKRDGK 113
Query: 136 VDSIAAALILQEVLD 150
+DSIAA +IL+ LD
Sbjct: 114 IDSIAAKVILERYLD 128
>gi|91070313|gb|ABE11231.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone HF10-88D1]
Length = 153
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 6/152 (3%)
Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+K KP + I S+D+GTKRIGLA DP ++ P + R + Q + ++I N+
Sbjct: 1 MKFCKPKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINELNL 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
FI+G+PL+ G + + + ++ R++ +PF + +E +T +
Sbjct: 61 TGFIVGIPLDEEGQMTTQAIDCKKYGQ-LLSRELMLPFSYVNEHSSTWESSYRF----GI 115
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+K + +DS +A +IL++ + LE G
Sbjct: 116 KKDKSGLIDSFSAKIILEQWIAEGPELEEIAG 147
>gi|78779183|ref|YP_397295.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
9312]
gi|146325588|sp|Q31B86|RUVX_PROM9 RecName: Full=Putative Holliday junction resolvase
gi|78712682|gb|ABB49859.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
9312]
Length = 153
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+K KP + I S D+G KRIGLA DP ++ P + R + + + + I N+
Sbjct: 1 MKFYKPKPRSILSFDVGIKRIGLAYCDPLCITSNILPAVKRVEDNKELKIIRNHIKKFNL 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
FI+GLPL+ G P+ + ++ ++ +PF + +E +T +
Sbjct: 61 TGFIVGLPLDEKGKMTPQAIDCMNYGQ-LLSNELKLPFSYVNEHSSTWESSNRF----GI 115
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+K + +DS AA +IL++ + LE G
Sbjct: 116 KKDKSGLIDSFAAKVILEQWIKEGPELEELAG 147
>gi|163854867|ref|YP_001629165.1| Holliday junction resolvase-like protein [Bordetella petrii DSM
12804]
gi|226725491|sp|A9I1T0|RUVX_BORPD RecName: Full=Putative Holliday junction resolvase
gi|163258595|emb|CAP40894.1| putative Hollyday junction resolvase [Bordetella petrii]
Length = 131
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 9/139 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + R A P + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSEIREARFARIGQLLQQWQPQRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L L +G E P R F + + R + DER +++ AQ++L
Sbjct: 62 LALASDGGEQPATARCRRFANQLRGR-YGLAVELVDERGSSMEAQRLLGTHAPDDAVAAA 120
Query: 135 KVDSIAAALILQEVLDRIS 153
ILQ LD +
Sbjct: 121 V--------ILQRYLDALP 131
>gi|120609602|ref|YP_969280.1| Holliday junction resolvase-like protein [Acidovorax citrulli
AAC00-1]
gi|120588066|gb|ABM31506.1| Holliday junction resolvase YqgF [Acidovorax citrulli AAC00-1]
Length = 150
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 11/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A+ R A P+ + + + + A ++G+P
Sbjct: 25 QSFLAFDFGAKRTGVAVGSRLLRAASPQATIRAEGADARFAAVAERLREWQPDALVVGVP 84
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + R +P DER +T A +
Sbjct: 85 YHPDGAAHENTARALKFARQLRGR-FGLPVFEVDERYSTTEAHAGGAKDADAA------- 136
Query: 137 DSIAAALILQEVLDRIS 153
+A +IL++ L ++
Sbjct: 137 ---SACIILEQFLRQLP 150
>gi|118497459|ref|YP_898509.1| hypothetical protein FTN_0867 [Francisella tularensis subsp.
novicida U112]
gi|195536151|ref|ZP_03079158.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
gi|167012725|sp|A0Q690|RUVX_FRATN RecName: Full=Putative Holliday junction resolvase
gi|118423365|gb|ABK89755.1| conserved protein of unknown function [Francisella novicida U112]
gi|194372628|gb|EDX27339.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
Length = 136
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E + + F + ++ +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQNFETDITKAAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|89898213|ref|YP_515323.1| Holliday junction resolvase-like protein [Chlamydophila felis
Fe/C-56]
gi|146325561|sp|Q254W0|RUVX_CHLFF RecName: Full=Putative Holliday junction resolvase
gi|89331585|dbj|BAE81178.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
Length = 150
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 14 KPNQPI-ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAF 71
+ I +D G +RIGLA + + P F+ K + TA L I ++
Sbjct: 4 PKAKKIFLGVDYGQRRIGLAYAASPLFISLPIGFIEAGKTLEATAQSLAKIILEREVSCV 63
Query: 72 IIGLPLNMN-GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSR 129
++G P+ M G + + ++I +V V WDERL++ A+++L D +SR
Sbjct: 64 VLGNPIPMQIGQKSSLQEEILK-ISSLIQEFCHVDVVLWDERLSSAQAERMLKCDCGLSR 122
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
K+R K DS+AA LIL L+
Sbjct: 123 KQRKGKTDSVAATLILTNFLES 144
>gi|134301891|ref|YP_001121860.1| hypothetical protein FTW_0892 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|167012726|sp|A4IXT8|RUVX_FRATW RecName: Full=Putative Holliday junction resolvase
gi|134049668|gb|ABO46739.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 136
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVETYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E S + F + ++ +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|89256536|ref|YP_513898.1| hypothetical protein FTL_1215 [Francisella tularensis subsp.
holarctica LVS]
gi|115314967|ref|YP_763690.1| hypothetical protein FTH_1192 [Francisella tularensis subsp.
holarctica OSU18]
gi|156502651|ref|YP_001428716.1| hypothetical protein FTA_1285 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167010660|ref|ZP_02275591.1| hypothetical protein Ftulh_08094 [Francisella tularensis subsp.
holarctica FSC200]
gi|254367860|ref|ZP_04983880.1| hypothetical protein FTHG_01151 [Francisella tularensis subsp.
holarctica 257]
gi|254369476|ref|ZP_04985488.1| hypothetical protein FTAG_00463 [Francisella tularensis subsp.
holarctica FSC022]
gi|290952899|ref|ZP_06557520.1| putative Holliday junction resolvase [Francisella tularensis subsp.
holarctica URFT1]
gi|295313899|ref|ZP_06804465.1| putative Holliday junction resolvase [Francisella tularensis subsp.
holarctica URFT1]
gi|122325020|sp|Q0BLI1|RUVX_FRATO RecName: Full=Putative Holliday junction resolvase
gi|146325574|sp|Q2A304|RUVX_FRATH RecName: Full=Putative Holliday junction resolvase
gi|167012724|sp|A7NCQ7|RUVX_FRATF RecName: Full=Putative Holliday junction resolvase
gi|89144367|emb|CAJ79654.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica LVS]
gi|115129866|gb|ABI83053.1| crossover junction endodeoxyribonuclease [Francisella tularensis
subsp. holarctica OSU18]
gi|134253670|gb|EBA52764.1| hypothetical protein FTHG_01151 [Francisella tularensis subsp.
holarctica 257]
gi|156253254|gb|ABU61760.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|157122426|gb|EDO66566.1| hypothetical protein FTAG_00463 [Francisella tularensis subsp.
holarctica FSC022]
Length = 136
Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E S + F + ++ +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|332183969|gb|AEE26223.1| Putative Holliday junction resolvase [Francisella cf. novicida
3523]
Length = 136
Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + I+GLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E + + F + R +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQDFETDITKAAKDFAKEIQHR-YQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|270340027|ref|ZP_06006785.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270332902|gb|EFA43688.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 117
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 37 GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96
+ A+ + K + L S++ E + +IG P+ ++G+ FV
Sbjct: 1 MQFIANGLTTVETKDLFDF---LSSYVKQEEVERIVIGKPMQLDGNPSENFARVENFVGR 57
Query: 97 MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV---DSIAAALILQEVLDRIS 153
+P V++DER T+V A + +++ V +K R + D I+A +ILQ+ ++
Sbjct: 58 WRKSHPAIPIVYYDERFTSVLAHRAILESGVKKKTRRENKGLADEISATIILQDYMNSKK 117
>gi|224053911|ref|XP_002298037.1| predicted protein [Populus trichocarpa]
gi|222845295|gb|EEE82842.1| predicted protein [Populus trichocarpa]
Length = 170
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 2 SILLIEDLVKSLKPNQ-PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALE 58
+ L +L+K+ NQ +D+G K +GLA+SDP + A P L+RKK + A +
Sbjct: 6 PLSLFHELLKTSAINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNIELMATD 65
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTV 116
S I+ ++ FI+G P + P + FV ++ + V F +WDE T+
Sbjct: 66 FQSLISELSLGGFIVGYPFDRQ-RGAPDAVRVKLFVDDLCKTGKLEGVKFTYWDECFTSK 124
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ + ++ +++ +D AA ILQ LD ++
Sbjct: 125 NVELLVKPLDLHPVHAKSIMDKFAAVGILQGYLDYVN 161
>gi|328907451|gb|EGG27217.1| RNAse YqgF [Propionibacterium sp. P08]
Length = 134
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 32 AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
A SD A P + + + L + I+GLP+ +NG+E R
Sbjct: 2 AASDRDAILAFPVETV--QTANRPMQRLAEIVAEYEPVEVIMGLPVALNGTEQLAARDIR 59
Query: 92 AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
+ + +P + DER+TT +A + L D + +++ +D AA IL++VL++
Sbjct: 60 DAGRQLAEAISPIPVRWVDERMTTRTAARALHDAGRNARQQRGVIDQAAAVAILEDVLEQ 119
Query: 152 IS 153
+
Sbjct: 120 VR 121
>gi|126640401|ref|YP_001083385.1| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978]
Length = 128
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 30 GLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
G+AI A+P P V K +LL + FI+GLPLNM+ SE
Sbjct: 2 GMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGLPLNMDDSESELSTR 61
Query: 90 TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEV 148
R F + + + DERLTT A++ L + + DS AAAL++Q
Sbjct: 62 ARKFARRLRHQ-TNIETWMVDERLTTREAREELGFYQEQGRAKKLSADSFAAALLIQSW 119
>gi|31544327|ref|NP_852905.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
R(low)]
gi|62901003|sp|Q7NBY7|RUVX_MYCGA RecName: Full=Putative Holliday junction resolvase
gi|31541171|gb|AAP56473.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
R(low)]
gi|284930366|gb|ADC30305.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
R(high)]
Length = 142
Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 8/140 (5%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-----AFIIG 74
++D+G++ +G+A D + A P + + + L+ + + + F+IG
Sbjct: 4 VALDVGSRTLGIATGDGEFKIASPYCVISFNQY--DFRQCLAELKEKTASFFYDFKFVIG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+P N++ ++ F+ ++ + +DE T++ A Q+LID + KKR +
Sbjct: 62 MPKNIDQTKSSTTEMVENFIE-LLKANYKNEVIIYDESYTSIIADQLLIDNQIKAKKRKE 120
Query: 135 KVDSIAAALILQEVLDRISF 154
K+D +AA +ILQ D +
Sbjct: 121 KIDKLAAFVILQSFFDDDRY 140
>gi|187931684|ref|YP_001891668.1| hypothetical protein FTM_0962 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|226725524|sp|B2SGN1|RUVX_FRATM RecName: Full=Putative Holliday junction resolvase
gi|187712593|gb|ACD30890.1| conserved hypothetical protein [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 136
Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E S + F + ++ +E +T A+ L + S+K KV
Sbjct: 63 LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEF-KSKKISHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|255022230|ref|ZP_05294225.1| Putative Holliday junction resolvase [Acidithiobacillus caldus ATCC
51756]
gi|254968321|gb|EET25888.1| Putative Holliday junction resolvase [Acidithiobacillus caldus ATCC
51756]
Length = 148
Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
P ID G++RIGLAI P + L + A ++GL
Sbjct: 11 GPWLGIDYGSRRIGLAILAHLDIAPRPLGTVANGGGGPDWPALEKVLAQWAPVACVVGLT 70
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+G+E R F + R +P ++ DERL++V+A L + + ++++ +
Sbjct: 71 ARADGTESAVARGARHFAAALSQR-YGLPILWQDERLSSVTAAVRLREASPRKRRQRLAL 129
Query: 137 DSIAAALILQEV 148
D +AA IL+
Sbjct: 130 DPLAACEILRGF 141
>gi|167627980|ref|YP_001678480.1| hypothetical protein Fphi_1753 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|241668534|ref|ZP_04756112.1| hypothetical protein FphipA2_07196 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877069|ref|ZP_05249779.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|189046097|sp|B0U0E9|RUVX_FRAP2 RecName: Full=Putative Holliday junction resolvase
gi|167597981|gb|ABZ87979.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254843090|gb|EET21504.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 136
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIGLA + A P + +EL + N + +IGLP
Sbjct: 3 QSLIAIDYGKARIGLASGQMITKTATPIGTVEAYDGVPNWIELDKIVKRWNPSDIVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E + + F + +R +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQDFETDITKAAKDFAKEVKER-YKRNVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|47459273|ref|YP_016135.1| endonuclease [Mycoplasma mobile 163K]
gi|62900979|sp|Q6KHK6|RUVX_MYCMO RecName: Full=Putative Holliday junction resolvase
gi|47458602|gb|AAT27924.1| hypothetical endonuclease [Mycoplasma mobile 163K]
Length = 144
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL 77
IDLG R G AISD + + P ++K LE+ + I +IGLP+
Sbjct: 4 LGIDLGKIRTGFAISDDSNKISLPLKTFIQKNANFNNIILEIKKILLEYQIDTIVIGLPI 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+N + F ++ ++++ +P F +E ++V A + + + KKR VD
Sbjct: 64 KINNEKTKSTIFVENFKKHL-EKEINLPIFFVNEYNSSVLANLSINE--MKSKKRKTIVD 120
Query: 138 SIAAALILQEVLDR 151
I+A +IL + L+
Sbjct: 121 KISAQIILNDFLNN 134
>gi|219362555|ref|NP_001136992.1| hypothetical protein LOC100217155 [Zea mays]
gi|194697900|gb|ACF83034.1| unknown [Zea mays]
Length = 174
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 12/164 (7%)
Query: 1 MSILLIEDLVKSL------KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ 54
M +L E+L + + + +D+G+K +G+AISD R A P L R K
Sbjct: 1 MRLLQAEELFRKVLEVGSKNKAARLLGLDVGSKYVGVAISDEKNRVAMPLSVLCRTKTNI 60
Query: 55 T--ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWD 110
A + + ++ +IA F++G P + G + + + +P+ +WD
Sbjct: 61 NLMADDFKTLVSMYSIAGFVVGYPFKIYGQPCASAIQV-SLAGELCKTGKLDDLPYAYWD 119
Query: 111 ERLTTVSAQQILIDMNVSR-KKRIQKVDSIAAALILQEVLDRIS 153
E T+ + +L +N+ D AA ILQ LD ++
Sbjct: 120 ENFTSKCVEALLHPLNLKDLDDAKTMTDKFAAVCILQGYLDNMN 163
>gi|125572132|gb|EAZ13647.1| hypothetical protein OsJ_03564 [Oryza sativa Japonica Group]
Length = 180
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 12/165 (7%)
Query: 1 MSILLIEDLVKS-----LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55
M +L + L + + + +D+G+K +GLA+SD R A P L R K +
Sbjct: 1 MRLLKADQLFRKVIDGGWRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60
Query: 56 --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
A + ++ ++ ++A F++G P N+ G P R V + + + + +WDE
Sbjct: 61 LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120
Query: 112 RLTTVS--AQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153
T+ + +L + + + D AA ILQ LD ++
Sbjct: 121 NFTSKVMCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMN 165
>gi|88705483|ref|ZP_01103194.1| Holliday junction resolvase [Congregibacter litoralis KT71]
gi|88700573|gb|EAQ97681.1| Holliday junction resolvase [Congregibacter litoralis KT71]
Length = 121
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 32 AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
A+ + P L + ++ + +IG PLNM+G+ R
Sbjct: 2 AVGNSALGTTQPLAILRARDGQPDWTQVAALCKEWEPDLLLIGDPLNMDGTVSDFAQRAR 61
Query: 92 AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
F + + ++ + DERL++ +Q + S VD +AA LIL++ L
Sbjct: 62 KFARRL-EGRLGIAVEMVDERLSSFEVKQQQREAGHSGDYHESPVDDLAAELILKDWL 118
>gi|160897026|ref|YP_001562608.1| Holliday junction resolvase-like protein [Delftia acidovorans
SPH-1]
gi|160362610|gb|ABX34223.1| Holliday junction resolvase YqgF [Delftia acidovorans SPH-1]
Length = 152
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 11/133 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G A+ R A+P P + + + I A +IG+P
Sbjct: 27 QSFVAFDFGAKRTGCAVGTRMLRSANPLPTIRAEAGEARLAQAGERIKEWQPDALVIGVP 86
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ + F + R +P DER +T A +
Sbjct: 87 YHPDGNAHENTARAKKFGRQLKSR-FGLPVYEVDERYSTTEALAGGARDADAA------- 138
Query: 137 DSIAAALILQEVL 149
+A +IL++ L
Sbjct: 139 ---SACIILEQFL 148
>gi|15829027|ref|NP_326387.1| hypothetical protein MYPU_5560 [Mycoplasma pulmonis UAB CTIP]
gi|32130058|sp|Q98Q13|RUVX_MYCPU RecName: Full=Putative Holliday junction resolvase
gi|14089971|emb|CAC13729.1| conserved hypothetical protein [Mycoplasma pulmonis]
Length = 146
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPG-RRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGLP 76
++DLGTK G AISDP FA P ++ + +L + I+G P
Sbjct: 8 IALDLGTKSCGFAISDPISNSFAIPLENFFFEENNFKKVINKLKHYEKKYEFDTIILGYP 67
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L M G+ R F ++ + V DERL+TV A+ +L + N+S+ K +K
Sbjct: 68 LRMTGTRSERSIMVEEF-EKLLRKTFSQRIVLVDERLSTVKAKAMLKETNISQSKIKEKK 126
Query: 137 DSIAAALILQEVLDR 151
DS+AAAL+L L+
Sbjct: 127 DSMAAALLLNYYLNN 141
>gi|125527821|gb|EAY75935.1| hypothetical protein OsI_03854 [Oryza sativa Indica Group]
Length = 180
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55
M +L + L + + + + +D+G+K +GLA+SD R A P L R K +
Sbjct: 1 MRLLKADQLFRKVIDGGSRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60
Query: 56 --ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
A + ++ ++ ++A F++G P N+ G P R V + + + + +WDE
Sbjct: 61 LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120
Query: 112 RLTTVS--AQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153
T+ + +L + + + D AA ILQ LD ++
Sbjct: 121 NFTSKVMCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMN 165
>gi|297564704|ref|YP_003683676.1| Holliday junction resolvase YqgF [Meiothermus silvanus DSM 9946]
gi|296849153|gb|ADH62168.1| Holliday junction resolvase YqgF [Meiothermus silvanus DSM 9946]
Length = 135
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+A++D+G RIGLA+ + G +A R +LVR+ L L +F E +A I+GLPL
Sbjct: 2 KVAALDVGEARIGLAVGEVGSPWAFGRGYLVRRTPQADVLALRAFAERERVAKLIVGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G+ + V + R+ + DER TT Q L + ++ K+D
Sbjct: 62 RTDGTPSAQAARVLELVRAL--REAGLEVETLDERFTTQLGAQRLKEAPRRVRQEKGKLD 119
Query: 138 SIAAALILQEVLDRIS 153
AA +L+ L+R
Sbjct: 120 EAAAVALLESYLERAR 135
>gi|208779255|ref|ZP_03246601.1| conserved hypothetical protein [Francisella novicida FTG]
gi|254374279|ref|ZP_04989761.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|151571999|gb|EDN37653.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|208745055|gb|EDZ91353.1| conserved hypothetical protein [Francisella novicida FTG]
Length = 136
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E + + F + ++ +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQDFETDITKAAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|124265899|ref|YP_001019903.1| Holliday junction resolvase-like protein [Methylibium
petroleiphilum PM1]
gi|124258674|gb|ABM93668.1| putative Holliday junction resolvase [Methylibium petroleiphilum
PM1]
Length = 136
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+ + + +P Q + + D G KR G+A + R A P + + + I
Sbjct: 1 MPEPAGAPQPLQTLLAFDFGLKRTGVATGNTLTRSAQPLRTVAAE-GDARFDAIAKLIAE 59
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
AA ++G+P + +G+ + F + R +P DER +T A
Sbjct: 60 WQPAALVVGVPFHPDGAPHDNTRRAQRFARQLHGR-FRLPVHEVDERWSTTEA 111
>gi|254372859|ref|ZP_04988348.1| hypothetical protein FTCG_00429 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570586|gb|EDN36240.1| hypothetical protein FTCG_00429 [Francisella novicida GA99-3549]
Length = 138
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +ID G RIG+A + A P + +EL I N + IIGLPL
Sbjct: 6 SLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLPL 65
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ E + + F + ++ +E +T A+ L ++ S+K KVD
Sbjct: 66 DTQDFETDITKAAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKVD 123
Query: 138 SIAAALILQEVL 149
++AA +IL+ +
Sbjct: 124 ALAACVILETWM 135
>gi|123966025|ref|YP_001011106.1| endonuclease [Prochlorococcus marinus str. MIT 9515]
gi|167012749|sp|A2BW38|RUVX_PROM5 RecName: Full=Putative Holliday junction resolvase
gi|123200391|gb|ABM71999.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. MIT 9515]
Length = 151
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 5/147 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
++ I S+D+GTKRIGLA D + P L R+K + S I N+ FI+
Sbjct: 6 PKSKSILSLDIGTKRIGLAYCDSLFITVNILPALRREKNKNEFKTIKSHIKKLNLTGFIV 65
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ G + + + + + + +PF F +E +T ++ V +K +
Sbjct: 66 GLPLDDKGRMTSQAFDCKTYGEYLFNE-LKLPFSFVNEHSSTWESENRF---GV-KKDKS 120
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+DS++A +IL++ + L+ G
Sbjct: 121 GLIDSLSAKVILEQWIQEGPELKELMG 147
>gi|319940853|ref|ZP_08015192.1| Holliday junction resolvase YqgF [Sutterella wadsworthensis
3_1_45B]
gi|319805735|gb|EFW02516.1| Holliday junction resolvase YqgF [Sutterella wadsworthensis
3_1_45B]
Length = 141
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 12/141 (8%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
L L + + D G R G+A+ + R A P L + + ++
Sbjct: 5 LETFLSEPGTVLAFDFGLARTGVAVGNTVTRTAEPLVILDASTNESRWQSIEALMSEWKP 64
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++G+P +G+ F + + ++ DER ++V
Sbjct: 65 KFLVVGVPRLGDGNPSTLTARCERFARQL-GGRYHLRVFTVDERFSSVEV---------- 113
Query: 129 RKKRIQKVDSIAAALILQEVL 149
+ +D AAA+IL++
Sbjct: 114 -AQGRDHIDDRAAAVILEQFF 133
>gi|291297317|ref|YP_003508715.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279]
gi|290472276|gb|ADD29695.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279]
Length = 136
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D+G RIGLA+ + G +A R +LVRK + L +F E F++GLPL
Sbjct: 2 RVVALDVGEARIGLAVGEIGSPWAFGRGYLVRKNLEADLEALAAFAERERAERFVVGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G + +A V M +R + DER TT Q L ++ K+D
Sbjct: 62 RTDGRPSAQAERVQALVEAMRER--GMQLELLDERYTTKLGQNRLKHAPKRIRQEKGKLD 119
Query: 138 SIAAALILQEVLDRI 152
AA +L+ L R+
Sbjct: 120 EAAAIALLESYLARV 134
>gi|62263115|gb|AAX78128.1| unknown protein [synthetic construct]
Length = 184
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG++ + A P + +EL I N + IIGLP
Sbjct: 42 QSLIAIDYGKARIGISSGQMITKTATPIGTVEAYDGVPNWIELDKIIKCWNPSDIIIGLP 101
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E S + F + ++ +E +T A+ L ++ S+K KV
Sbjct: 102 LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 159
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 160 DALAACVILETWM 172
>gi|195952585|ref|YP_002120875.1| Holliday junction resolvase YqgF [Hydrogenobaculum sp. Y04AAS1]
gi|195932197|gb|ACG56897.1| Holliday junction resolvase YqgF [Hydrogenobaculum sp. Y04AAS1]
Length = 123
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID GTKRIGLA+ D + P + K L + I ++G PL
Sbjct: 2 ILGIDYGTKRIGLALGDKHLKIYKPFKII--KNDKNLIQTLKHIVKAYKIELIVLGYPLT 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G EG R + F ++ +++ + V DER TT A+ + + +++D
Sbjct: 60 PSGKEGQRAKKVKKFYE-LLKKELNIDIVLQDERYTTFEAKSLSDE---------KEIDH 109
Query: 139 IAAALILQEVLDRI 152
I+A +IL+E + +
Sbjct: 110 ISAYIILKEYAENL 123
>gi|56708078|ref|YP_169974.1| hypothetical protein FTT_0986 [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670549|ref|YP_667106.1| hypothetical protein FTF0986 [Francisella tularensis subsp.
tularensis FSC198]
gi|224457170|ref|ZP_03665643.1| hypothetical protein FtultM_05530 [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254370563|ref|ZP_04986568.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254874882|ref|ZP_05247592.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|62900911|sp|Q5NG68|RUVX_FRATT RecName: Full=Putative Holliday junction resolvase
gi|118597210|sp|Q14HM0|RUVX_FRAT1 RecName: Full=Putative Holliday junction resolvase
gi|56604570|emb|CAG45619.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320882|emb|CAL09002.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC198]
gi|151568806|gb|EDN34460.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254840881|gb|EET19317.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159278|gb|ADA78669.1| hypothetical protein NE061598_05655 [Francisella tularensis subsp.
tularensis NE061598]
Length = 136
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG++ + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGISSGQMITKTATPIGTVEAYDGVPNWIELDKIIKCWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E S + F + ++ +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQNFETDITKSAKDFAKE-VQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|113955356|ref|YP_730921.1| endonuclease [Synechococcus sp. CC9311]
gi|113882707|gb|ABI47665.1| Predicted endonuclease [Synechococcus sp. CC9311]
Length = 158
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
++ + S+D+G KRIGLA D P P L+R+ Q L T + ++
Sbjct: 3 PSSRSMLSLDVGRKRIGLAGCDALGITVSPLPALLRRAFKQDLGHLEQVCLTRRVQGLVV 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ G + + + + + +P +E ++ +A + R
Sbjct: 63 GLPLDAAGQFTEQAAHCQRYGQRLA-MALKLPLALVNEHSSSWAAAERYGLQG----DRS 117
Query: 134 QKVDSIAAALILQEVL 149
++DS AA+L+L++ L
Sbjct: 118 GRLDSAAASLLLEQWL 133
>gi|206895527|ref|YP_002247114.1| hypothetical protein COPRO5265_0767 [Coprothermobacter
proteolyticus DSM 5265]
gi|206738144|gb|ACI17222.1| conserved hypothetical protein [Coprothermobacter proteolyticus DSM
5265]
Length = 137
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFIIGLPL 77
I ++D G KRIG+A SD +A P L + T+ +EL ++GLP
Sbjct: 2 IVAVDFGLKRIGMARSDDSETWAFPHKTLEGNDLETKLIIELKKI----GPRVVVLGLPR 57
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+EG + RA + D V FWDERLT+ + K KVD
Sbjct: 58 NMDGTEGEMAVAVRALGQRLED--VGFTVDFWDERLTSRLVSRQDPRSLKKAIKDKGKVD 115
Query: 138 SIAAALILQEVLD 150
++A LILQE ++
Sbjct: 116 LMSAVLILQEYIN 128
>gi|152992044|ref|YP_001357765.1| Holliday junction resolvase-like protein [Sulfurovum sp. NBC37-1]
gi|167016516|sp|A6Q7E9|RUVX_SULNB RecName: Full=Putative Holliday junction resolvase
gi|151423905|dbj|BAF71408.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 128
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+A+ID+G KRIG AI R P+ ++RK Q A +++SF+ I ++GLP
Sbjct: 2 KLAAIDVGLKRIGTAIC-LDGRIVMPQNAILRKNRNQAAHDVVSFLEEWEIEKLVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ SE + FV + ++ +P V+ DE+ ++ A+++ R K+ K+D
Sbjct: 61 GGSSSE-EMERRIQHFVSLL---ELDIPVVYQDEQGSSFEAKEM--TQGQFRHKKDGKID 114
Query: 138 SIAAALILQEVL 149
SIAA +IL+ L
Sbjct: 115 SIAAKIILERHL 126
>gi|297734533|emb|CBI16584.3| unnamed protein product [Vitis vinifera]
Length = 679
Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R GLA+S P L + + L+LL E + FIIGLP++
Sbjct: 513 LGVDLGMSRTGLALS--KGFSVRPLSVLKLR-GQKLELQLLEIAGREEVDEFIIGLPVSD 569
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E P+ + R+ + R DE T+ A ++IDM S+ R ++D
Sbjct: 570 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSLMIDMGHSKSARQNRID 629
Query: 138 SIAAALILQEVL 149
+ AA ++L+
Sbjct: 630 AYAAMMVLERYF 641
>gi|302398811|gb|ADL36700.1| GRF domain class transcription factor [Malus x domestica]
Length = 170
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 2 SILLIEDLVKSLK-PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALE 58
+ L +DL+K+ + +D+G K +G+A+SD + A P L+RKK + A +
Sbjct: 6 PLNLFQDLLKANTLERGRLLGLDVGDKYVGVAVSDLHNKIASPLSVLLRKKSNIGLMAAD 65
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTV 116
S I+ ++ FI+G P + P + F+ ++ + + + +WDE T+
Sbjct: 66 FQSLISELSLVGFIVGYPFDRQ-KGTPDAVQVKLFIDDLSKTRKLEGLKYTYWDEGFTSK 124
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ + +L +N+ + +D AA ILQ LD ++
Sbjct: 125 NVELLLKPLNLPPVQSKTIMDKFAAVGILQGYLDYVN 161
>gi|313680710|ref|YP_004058449.1| holliday junction resolvase yqgf [Oceanithermus profundus DSM
14977]
gi|313153425|gb|ADR37276.1| Holliday junction resolvase YqgF [Oceanithermus profundus DSM
14977]
Length = 133
Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G RIG+A+++ GR A R ++ R+ + + E ++GLP
Sbjct: 2 LGLDVGDARIGVAVAEEGRPLAFGRGWIERRDLEDDVARVCELARREEAGRVVVGLPRRT 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G EG + + + F DER TT A Q L + ++++ ++D
Sbjct: 62 GGEEG--AQAAKVRAFAAALEAAGLEVRFVDERFTTRVAAQALAHLPRKKRQQKGRLDEA 119
Query: 140 AAALILQEVLDR 151
AA IL+ L+R
Sbjct: 120 AAVAILETYLER 131
>gi|224129716|ref|XP_002328785.1| predicted protein [Populus trichocarpa]
gi|222839083|gb|EEE77434.1| predicted protein [Populus trichocarpa]
Length = 254
Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R G+A+S P L + + L LL E + FIIGLP +
Sbjct: 92 LGVDLGLSRSGVALS--KGFTVRPLTVLELR-GQKLELRLLEIAENEEVDEFIIGLPKSW 148
Query: 80 NGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E P+ + R+ + DE T+ A +IDM +++ R +KVD
Sbjct: 149 DGKETPQSNKVRSVAGRFAVLAAHRGWRVYLQDEHGTSTEATNRMIDMGLNKSTRQKKVD 208
Query: 138 SIAAALILQEVL 149
+ AA ++L+
Sbjct: 209 AYAAVMVLERYF 220
>gi|152966975|ref|YP_001362759.1| Holliday junction resolvase YqgF [Kineococcus radiotolerans
SRS30216]
gi|226725529|sp|A6WCF6|RUVX_KINRD RecName: Full=Putative Holliday junction resolvase
gi|151361492|gb|ABS04495.1| Holliday junction resolvase YqgF [Kineococcus radiotolerans
SRS30216]
Length = 188
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
++D+G+ R+GLA DP A P LVR E+ + ++GLPL+
Sbjct: 7 LAVDVGSVRVGLAACDPAGVIASPVRTLVRDPGHDADVAEIAAEARARGAVEIVLGLPLS 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GSEGP + ++ VP DERL+TV A + L + K+
Sbjct: 67 LDGSEGPAALRALDYADKIVRSVPEVPVRLVDERLSTVGAHRALHAAGLKEKQ 119
>gi|296127814|ref|YP_003635066.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563]
gi|296019630|gb|ADG72867.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563]
Length = 141
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D G K+ G A D + P + + L+ I +NI + GLPL+
Sbjct: 2 VLGVDFGRKKTGTAFMDMNIKIPFPLLLIEESNAKKVKRALMDIIEEKNIDTVVFGLPLS 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G E R F ++ V V VF DE T+ A IL + + + D
Sbjct: 62 DEGKESEWCSEIRRFSDFLLK-SVKVNVVFVDEYGTSKEADYILR--GRKKNVKKKANDL 118
Query: 139 IAAALILQEVLDRISF 154
IAAALIL+ L+ ++
Sbjct: 119 IAAALILENYLNVLNM 134
>gi|221065221|ref|ZP_03541326.1| Holliday junction resolvase YqgF [Comamonas testosteroni KF-1]
gi|220710244|gb|EED65612.1| Holliday junction resolvase YqgF [Comamonas testosteroni KF-1]
Length = 170
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 11/133 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q D G KR G A + A+P P + + I A +IG+P
Sbjct: 45 QQFLGFDFGIKRTGCASGNRVLGGANPLPTIRADGADARLAAVEKLIREWQPNALVIGVP 104
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + R +P DER +T A +
Sbjct: 105 YHPDGAAHENTARALKFGRQLRSR-FKLPVYEVDERYSTTEALAGGARDADAA------- 156
Query: 137 DSIAAALILQEVL 149
+A +IL++ L
Sbjct: 157 ---SACIILEQFL 166
>gi|299470299|emb|CBN78349.1| Holliday junction resolvase-like protein [Ectocarpus siliculosus]
Length = 258
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 2 SILLIEDLVKSLK----PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL 57
+IL +VK P+ +D+ G+A+SD + A P + R++ T+
Sbjct: 79 TILTAAGMVKLCGLPGNRGSPLVGLDVAPSNFGVAVSDETKTLAFPLTRVPRRQSTKKLD 138
Query: 58 ------ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM-IDRKVYVPFVFWD 110
+L + + ++G PL+ +G + F+ + + KV +P +D
Sbjct: 139 PALVIGKLREIVEDCSACGLVVGWPLSKSGRAEGQCLMVLQFLRQLHLRGKVDIPVTLFD 198
Query: 111 ERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
ER+T+V A+ IL D + +K ++ D AA +ILQ LD
Sbjct: 199 ERMTSVEARGILKDDGL-GRKIAEREDETAAMVILQGFLDS 238
>gi|297242855|ref|ZP_06926793.1| endonuclease [Gardnerella vaginalis AMD]
gi|296889066|gb|EFH27800.1| endonuclease [Gardnerella vaginalis AMD]
Length = 124
Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 51 KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV------ 104
+ E+L I N+ +IGLPL ++G+EG + N+I R +
Sbjct: 6 DSFRAIDEVLEVIEDNNVEKVVIGLPLQLDGTEGKSAKKALRWGKNLIKRMQILHDEKDW 65
Query: 105 ------PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
V+ DERLTTVSA + L+ ++S KK VD +A LILQ LD
Sbjct: 66 ALDYMPEVVWKDERLTTVSAHRQLLQADLSTKKHRPMVDQQSAVLILQSALDS 118
>gi|148927755|ref|ZP_01811189.1| Holliday junction resolvase YqgF [candidate division TM7 genomosp.
GTL1]
gi|147886898|gb|EDK72434.1| Holliday junction resolvase YqgF [candidate division TM7 genomosp.
GTL1]
Length = 138
Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+GTKRIG+A +D RF P L + L I + I+G P
Sbjct: 6 HSVIALDVGTKRIGIAHADTAVRFPVPYGTLEVDGLE--IERLREIIAELEPSLIIVGYP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
N G + + F + + +F DE LT+V A++ L N + +
Sbjct: 64 RNQQGEPTAQTGVVKEFAQKL--EPFQIDILFQDESLTSVLAEKYLQSQN--KPYTKSDI 119
Query: 137 DSIAAALILQEVLDR 151
D+ AAA+IL + L+
Sbjct: 120 DAHAAAIILGDYLEE 134
>gi|148242101|ref|YP_001227258.1| putative Holliday junction resolvase [Synechococcus sp. RCC307]
gi|147850411|emb|CAK27905.1| Putative Holliday junction resolvase [Synechococcus sp. RCC307]
Length = 151
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ + ++D+G +RIGLA DP P P L R + Q +L + A ++
Sbjct: 7 PQARSVLALDVGRRRIGLAGCDPLGLSVTPLPALQRGRFHQDLEQLKPLVEQRRCLALVV 66
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ +G+ P+ R + + + + +P + +E ++ +A + + R
Sbjct: 67 GLPLDPDGAFTPQAEHCRRYGERLA-QSLSLPVAWVNEHSSSWAA----AEQHGLHGDRT 121
Query: 134 QKVDS 138
++DS
Sbjct: 122 GRLDS 126
>gi|125532910|gb|EAY79475.1| hypothetical protein OsI_34603 [Oryza sativa Indica Group]
Length = 237
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 12/153 (7%)
Query: 7 EDLVKSLKPNQPI--------ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
++L +L PN +DLG R G+A+ G P L + +
Sbjct: 56 DELPAALLPNAARRRDGCRFSLGVDLGEARTGVAVG-RGITLPRPLTVLKLRGQKLELM- 113
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTV 116
LL + I+GLP++ +GSE P+ + R+ V + + + DE TT+
Sbjct: 114 LLDIAQQQEADELIVGLPVSADGSETPQSNKVRSVVGRLAVQAADRGLRVYLQDEHGTTI 173
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
A + +I V R R K D+ +A +IL+
Sbjct: 174 DALEFMISRGVKRSARDVKSDAYSAMMILERYF 206
>gi|26554307|ref|NP_758241.1| hypothetical protein MYPE8530 [Mycoplasma penetrans HF-2]
gi|32130033|sp|Q8EUR7|RUVX_MYCPE RecName: Full=Putative Holliday junction resolvase
gi|26454316|dbj|BAC44645.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
Length = 142
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N I +ID GTK IG AI+D P + ++ ++L + ENI +IG
Sbjct: 5 NSKILAIDFGTKIIGTAINDINLNLCLPYCEITNNELK--FKKILEIVEEENIKEIVIGF 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
P N R F + + + + + F+DE +T S+++ L++ NV K
Sbjct: 63 PKTQNSYVSERHQLIIDFKNQLSELLKNKNIEICFFDESYSTKSSKESLMNFNVKTSKLK 122
Query: 134 QKVDSIAAALILQEVL 149
+ D IAA++IL+ L
Sbjct: 123 KNKDMIAASIILENYL 138
>gi|28493342|ref|NP_787503.1| hypothetical protein TWT375 [Tropheryma whipplei str. Twist]
gi|28572547|ref|NP_789327.1| hypothetical protein TW394 [Tropheryma whipplei TW08/27]
gi|62901025|sp|Q83GD2|RUVX_TROWT RecName: Full=Putative Holliday junction resolvase
gi|62901026|sp|Q83HU9|RUVX_TROW8 RecName: Full=Putative Holliday junction resolvase
gi|28410679|emb|CAD67065.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
gi|28476383|gb|AAO44472.1| unknown [Tropheryma whipplei str. Twist]
Length = 145
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G+ RIG+A A P L R E+L +I+ +I +IGLPL +
Sbjct: 11 LGLDFGSTRIGVAR--NCGSLAVPVGVLPRAS----CAEILGYISRYSIDEVVIGLPLTL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G E + F ++ V F+DER TTV A Q + K+ + VD+
Sbjct: 65 AGKEKQSARLAKEFSRFLVSS--GVQVRFFDERFTTVIATQKFYSLGKGVKQIRKCVDAA 122
Query: 140 AAALILQEVLD 150
AA ++LQ LD
Sbjct: 123 AATVMLQLFLD 133
>gi|115483352|ref|NP_001065346.1| Os10g0555200 [Oryza sativa Japonica Group]
gi|13194228|gb|AAK15446.1|AC037426_8 hypothetical protein [Oryza sativa Japonica Group]
gi|31433450|gb|AAP54963.1| expressed protein [Oryza sativa Japonica Group]
gi|113639878|dbj|BAF27183.1| Os10g0555200 [Oryza sativa Japonica Group]
gi|125575650|gb|EAZ16934.1| hypothetical protein OsJ_32416 [Oryza sativa Japonica Group]
gi|215697176|dbj|BAG91170.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 237
Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 12/153 (7%)
Query: 7 EDLVKSLKPNQPI--------ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
++L +L PN +DLG R G+A+ G P L + +
Sbjct: 56 DELPAALLPNAARRRDGCGFSLGVDLGEARTGVAVG-RGITLPRPLTVLKLRGQKLELM- 113
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTV 116
LL + I+GLP++ +GSE P+ + R+ V + + + DE TT+
Sbjct: 114 LLDIAQQQEADELIVGLPVSADGSETPQSNKVRSVVGRLAVQAADRGLRVYLQDEYGTTI 173
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
A + +I V R R K D+ +A +IL+
Sbjct: 174 DALEFMISRGVKRSARDVKSDAYSAMMILERYF 206
>gi|264680115|ref|YP_003280024.1| Holliday junction resolvase YqgF [Comamonas testosteroni CNB-2]
gi|262210630|gb|ACY34728.1| Holliday junction resolvase YqgF [Comamonas testosteroni CNB-2]
Length = 170
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 11/133 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q D G KR G A + A+P P + + + I A +IG+P
Sbjct: 45 QQFLGFDFGIKRTGCASGNRVLGGANPLPTIKAEAADARLAAVEKLIREWQPNALVIGVP 104
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + R +P DER +T A +
Sbjct: 105 YHPDGAAHENTARALKFGRQLRSR-FKLPVYEVDERYSTTEALAGGARDADAA------- 156
Query: 137 DSIAAALILQEVL 149
+A +IL++ L
Sbjct: 157 ---SACIILEQFL 166
>gi|139436943|ref|ZP_01771103.1| Hypothetical protein COLAER_00076 [Collinsella aerofaciens ATCC
25986]
gi|133776590|gb|EBA40410.1| Hypothetical protein COLAER_00076 [Collinsella aerofaciens ATCC
25986]
Length = 119
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
A P L +VT A + + G PL M G GP+ A + D
Sbjct: 1 MAMPVKVLPAAEVTGMAKTFRYLVEDYEPDILVSGRPLTMAGEPGPQAERVAAVAQKIAD 60
Query: 100 RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ +P F DERL++ A++IL + ++ K+ K+D IAA+L LQ LDR +
Sbjct: 61 E-LDLPLEFEDERLSSQEAKRILREQGLNEKQMRGKIDMIAASLFLQTWLDRKN 113
>gi|299534054|ref|ZP_07047406.1| Holliday junction resolvase-like protein [Comamonas testosteroni
S44]
gi|298717963|gb|EFI58968.1| Holliday junction resolvase-like protein [Comamonas testosteroni
S44]
Length = 170
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 11/133 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q D G KR G A + A+P P + + + I A +IG+P
Sbjct: 45 QQFLGFDFGIKRTGCASGNRVLGGANPLPTIKAEAADARLAAVEKLIREWQPNALVIGVP 104
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + R +P DER +T A +
Sbjct: 105 YHPDGAAHENTARALKFGRQLRSR-FKLPVYEVDERYSTTEALAGGARDADAA------- 156
Query: 137 DSIAAALILQEVL 149
+A +IL++ L
Sbjct: 157 ---SACIILEQFL 166
>gi|108804198|ref|YP_644135.1| Holliday junction resolvase YqgF [Rubrobacter xylanophilus DSM
9941]
gi|124107443|sp|Q1AWA5|RUVX_RUBXD RecName: Full=Putative Holliday junction resolvase
gi|108765441|gb|ABG04323.1| Holliday junction resolvase YqgF [Rubrobacter xylanophilus DSM
9941]
Length = 139
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
P +A++DLG G+A+SDP R A P + ++ L + E + ++
Sbjct: 3 PPEGRVAALDLGEVWTGVAVSDPTRTLARPLEVVRTSELPGVLRRL---VREEGVGEVLV 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP + G G + + ++ V FV WDERLTT L + ++
Sbjct: 60 GLPRTLRGEVGFQARRVSDRLSSLRAGFPEVRFVEWDERLTTKVVSGPLREGRRRGRR-- 117
Query: 134 QKVDSIAAALILQEVLD 150
++VD +AAA +LQE L+
Sbjct: 118 ERVDHLAAARMLQEYLE 134
>gi|21243644|ref|NP_643226.1| Holliday junction resolvase-like protein [Xanthomonas axonopodis
pv. citri str. 306]
gi|32130040|sp|Q8PII0|RUVX_XANAC RecName: Full=Putative Holliday junction resolvase
gi|21109221|gb|AAM37762.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 155
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+++P+ + D+G++RIG+A+ A + + L
Sbjct: 4 AGAIRPDGTVLGFDVGSRRIGVAVGSALGAGARAVAVINVHANGPDWVALDRVHKQWRPD 63
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
++G PL ++ + P AF + +R +P V DER ++V AQ+ +
Sbjct: 64 GLVVGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122
Query: 129 RKKRIQ 134
RK+R
Sbjct: 123 RKRRRD 128
>gi|301165958|emb|CBW25532.1| putative Holliday junction resolvase [Bacteriovorax marinus SJ]
Length = 153
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRR-FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I SID G K GLA PGR F R ++ + Q EL I + ++G+P
Sbjct: 19 ILSIDYGLKVTGLACYCPGREPFPQARGRIIYQSDEQLIDELSLIIEEDFFEVIVLGIPF 78
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136
++G+E R F + ++ + DE L++ +AQ+ + + + K +++
Sbjct: 79 YLDGNESEMTKKVRQFKTLLEEKFSDLQIYEQDETLSSNAAQERMKNSPQFNFKVDPKRI 138
Query: 137 DSIAAALILQEVL 149
D +AA +IL++ +
Sbjct: 139 DEVAATIILEDFM 151
>gi|258544006|ref|ZP_05704240.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826]
gi|258520747|gb|EEV89606.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826]
Length = 134
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G ++ G+A+ + A P L A +++ +++ +IGLP
Sbjct: 6 ILALDVGQRKTGVAVGQSLTQTAKPLAVLRHPAQQLEAAHFAAWVREWSVSHIVIGLPKL 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G E P R +P + DE L++ A+ L ++VD+
Sbjct: 66 RDGKEHPLAAPIRRIGAK-CQEAFGLPVHYIDEYLSSHEARARLPG--------EKEVDA 116
Query: 139 IAAALILQEVL 149
+AAA+I ++ L
Sbjct: 117 MAAAIIAEDWL 127
>gi|58581049|ref|YP_200065.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|58425643|gb|AAW74680.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 167
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
++ P+ + D+G++RIG+A+ A + L
Sbjct: 16 AGAILPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWDALDRVHKEWRPD 75
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
++G PL ++ P AF + +R +P V DER ++V AQ+ +
Sbjct: 76 GLVVGDPLTLDDKHQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 134
Query: 129 RKKRIQ 134
RK+R
Sbjct: 135 RKRRRD 140
>gi|206602306|gb|EDZ38787.1| putative Holliday junction resolvase YqgF [Leptospirillum sp. Group
II '5-way CG']
Length = 171
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--------VTQTALELLSFITTEN 67
P+ ID G RIGLAISD RF+ P + + +++ L T +
Sbjct: 15 KAPLLGIDWGEARIGLAISDNSLRFSEPLGVIENRCSFVPPLRIPSKSGDALKRICTEKK 74
Query: 68 IAAFIIGLPL-NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT--VSAQQILID 124
I I G+P +++G P+ + +I P WDE LT+ + +++I
Sbjct: 75 IRGIIFGVPWYHLSGDPNPKSEIFVEYA-RLIRSLTGCPVFLWDEGLTSDVLKSERISGK 133
Query: 125 MNVSR--KKRIQKVDSIAAALILQEVLDRI 152
SR K+ +D +A LILQ LD
Sbjct: 134 RKYSRSPKRSRDPIDHYSATLILQSFLDEC 163
>gi|320449493|ref|YP_004201589.1| hypothetical protein TSC_c04030 [Thermus scotoductus SA-01]
gi|320149662|gb|ADW21040.1| conserved hypothetical protein [Thermus scotoductus SA-01]
Length = 128
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
G RIGLA+ + G FA R +LVR+ + + LL F+ E + ++GLPL + E
Sbjct: 2 GEARIGLAVGEEGSPFAFGRGYLVRRSLEEDVAALLDFVRREGLGKLLVGLPLRTDLKES 61
Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
+ V + R V DER TT +A + L ++ ++D ++A ++
Sbjct: 62 AQAQRVLPLVEAL--RAKGVEVELVDERYTTQAAARRLKHAPKRIRREKGRLDEMSAVIL 119
Query: 145 LQEVL 149
L+ L
Sbjct: 120 LEGYL 124
>gi|289706210|ref|ZP_06502573.1| RNAse H-fold protein YqgF [Micrococcus luteus SK58]
gi|289557049|gb|EFD50377.1| RNAse H-fold protein YqgF [Micrococcus luteus SK58]
Length = 173
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL-ELLSFITTENIAAFII 73
+D+G R+G+A +DP A P L R + + EL++ ++ A +
Sbjct: 16 RRGRTLGVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDELVAHARELDVVAVYV 75
Query: 74 GLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
GLP+N+ G P + +++ VP DERL+TVSAQ L S
Sbjct: 76 GLPVNLRGEHTPSTQDALDYADAVAAALVEVSHPVPVRLVDERLSTVSAQAGLRAAGRSV 135
Query: 130 KKRIQKVD 137
K +D
Sbjct: 136 KDSRGVID 143
>gi|124514186|gb|EAY55701.1| putative holliday junction resolvase YqgF [Leptospirillum rubarum]
Length = 171
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--------VTQTALELLSFITTEN 67
P+ ID G R+GLA+SD RF+ P + + +++ L T +
Sbjct: 15 KAPLLGIDWGEARVGLAMSDNSLRFSEPLGVIENRCSFLPPFRIPSKSGGALKRICTEKK 74
Query: 68 IAAFIIGLPL-NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT--VSAQQILID 124
I + G+P +++G P+ + +I P WDE LT+ + ++++
Sbjct: 75 IQGIVFGVPWYHLSGDPNPKSEVFVEYA-RLIRSLTGCPVFLWDEGLTSDVLKSERMSGK 133
Query: 125 MNVSR--KKRIQKVDSIAAALILQEVLDRI 152
SR K+ +D +A LILQ LD
Sbjct: 134 RKYSRSPKRSRDPIDHYSATLILQSFLDEC 163
>gi|188990810|ref|YP_001902820.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. campestris str. B100]
gi|226695316|sp|B0RQM9|RUVX_XANCB RecName: Full=Putative Holliday junction resolvase
gi|167732570|emb|CAP50764.1| Putative Hollyday junction resolvase [Xanthomonas campestris pv.
campestris]
Length = 155
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 2/125 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+++P+ + D+G++RIG+A+ A + + L A
Sbjct: 4 AGAIRPDATVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVHKEWRPA 63
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
++G PL ++ + P AF + +R +P V DER ++V AQ+ +
Sbjct: 64 GLVVGDPLTLDDKDQPARKRAHAFARELRER-YALPVVLIDERSSSVEAAQRFARERADG 122
Query: 129 RKKRI 133
RK+R
Sbjct: 123 RKRRR 127
>gi|325919592|ref|ZP_08181604.1| hypothetical protein TIGR00250 [Xanthomonas gardneri ATCC 19865]
gi|325549928|gb|EGD20770.1| hypothetical protein TIGR00250 [Xanthomonas gardneri ATCC 19865]
Length = 155
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+++P+ + D+G++RIG+A+ A + L
Sbjct: 4 AGAIRPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHATGPDWAALDRVHKEWRPD 63
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
+IG PL ++ + P AF + +R +P V DER ++V AQ+ +
Sbjct: 64 GLVIGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122
Query: 129 RKKRIQ 134
RK+R
Sbjct: 123 RKRRRD 128
>gi|222112065|ref|YP_002554329.1| holliday junction resolvase-like protein [Acidovorax ebreus TPSY]
gi|221731509|gb|ACM34329.1| Holliday junction resolvase YqgF [Acidovorax ebreus TPSY]
Length = 139
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 12/133 (9%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A+ R A P+ + R + ++ I A ++G+P
Sbjct: 15 QSFLAFDYGLKRTGVAVGTRMLRSATPQGTI-RAEGDARFAQVAERIREWQPDALVVGVP 73
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ +G+ F + R +P DER +T A +
Sbjct: 74 LHPDGAAHENTARALKFARQLRGR-FGLPVFEVDERYSTTEALSAGAADADAASA----- 127
Query: 137 DSIAAALILQEVL 149
+IL++ L
Sbjct: 128 -----CIILEQFL 135
>gi|78048618|ref|YP_364793.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|325925530|ref|ZP_08186918.1| hypothetical protein TIGR00250 [Xanthomonas perforans 91-118]
gi|146325624|sp|Q3BR20|RUVX_XANC5 RecName: Full=Putative Holliday junction resolvase
gi|78037048|emb|CAJ24785.1| putative Hollyday junction resolvase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544034|gb|EGD15429.1| hypothetical protein TIGR00250 [Xanthomonas perforans 91-118]
Length = 155
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+++P+ + D+G++RIG+A+ A + + L
Sbjct: 4 AGAIRPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVYKQWRPD 63
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
++G PL ++ + P AF + +R +P V DER ++V AQ+ +
Sbjct: 64 GLVVGDPLTLDDKDQPARKRAHAFGRQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122
Query: 129 RKKRIQ 134
RK+R
Sbjct: 123 RKRRRD 128
>gi|254821811|ref|ZP_05226812.1| Holliday junction resolvase-like protein [Mycobacterium
intracellulare ATCC 13950]
Length = 250
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 47/117 (40%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+D+G+ RIG+A SDP A P + R + + L + ++
Sbjct: 19 PGRGRRLGVDVGSVRIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVVV 78
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
GLP + GP + DR P DERLTTVSAQ+ L V K
Sbjct: 79 GLPRTLADRTGPSAIDAIELADALADRVAPTPVRLADERLTTVSAQRSLRAAGVRAK 135
>gi|294626288|ref|ZP_06704891.1| holliday junction resolvase-like protein [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|294666666|ref|ZP_06731903.1| Holliday junction resolvase-like protein [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
gi|292599434|gb|EFF43568.1| holliday junction resolvase-like protein [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|292603572|gb|EFF46986.1| Holliday junction resolvase-like protein [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
Length = 155
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+++P+ + D+G++RIG+A+ A + L
Sbjct: 4 AGAIRPDGTVLGFDVGSRRIGVAVGSALGAGARAVAVINVHANGPDWGALDRVYKQWRPD 63
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
+IG PL ++ + P AF + +R +P V DER ++V AQ+ +
Sbjct: 64 GLVIGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122
Query: 129 RKKRIQ 134
RK+R
Sbjct: 123 RKRRRD 128
>gi|313681709|ref|YP_004059447.1| holliday junction resolvase yqgf [Sulfuricurvum kujiense DSM 16994]
gi|313154569|gb|ADR33247.1| Holliday junction resolvase YqgF [Sulfuricurvum kujiense DSM 16994]
Length = 130
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +IDLG KRIGLA+S G P P + RK Q A ++ + ++G+
Sbjct: 1 MGAIIAIDLGLKRIGLALS-YGNTLVTPLPAIERKNRNQAANDVKKVLNEYEATTVVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ GS R H M + + DE ++ A++++ R KR +
Sbjct: 60 PM---GSTTEDEMR-RRVAHFMNLVEFNGEIAYQDESHSSKEAEELMK--GDIRYKRDGR 113
Query: 136 VDSIAAALILQEVL 149
+DS++A +IL+ L
Sbjct: 114 IDSLSAKIILERYL 127
>gi|84622967|ref|YP_450339.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188577974|ref|YP_001914903.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|118597225|sp|Q5H2Z1|RUVX_XANOR RecName: Full=Putative Holliday junction resolvase
gi|146325625|sp|Q2P5W2|RUVX_XANOM RecName: Full=Putative Holliday junction resolvase
gi|226695317|sp|B2SIZ4|RUVX_XANOP RecName: Full=Putative Holliday junction resolvase
gi|84366907|dbj|BAE68065.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188522426|gb|ACD60371.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 155
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
++ P+ + D+G++RIG+A+ A + L
Sbjct: 4 AGAILPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWDALDRVHKEWRPD 63
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
++G PL ++ P AF + +R +P V DER ++V AQ+ +
Sbjct: 64 GLVVGDPLTLDDKHQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122
Query: 129 RKKRIQ 134
RK+R
Sbjct: 123 RKRRRD 128
>gi|121595864|ref|YP_987760.1| Holliday junction resolvase-like protein [Acidovorax sp. JS42]
gi|120607944|gb|ABM43684.1| Holliday junction resolvase YqgF [Acidovorax sp. JS42]
Length = 139
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 12/133 (9%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A+ R A P+ + R + ++ I A ++G+P
Sbjct: 15 QSFLAFDYGLKRTGVAVGTRMLRSATPQGTI-RAEGDARFAQVAERIREWQPDALVVGVP 73
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ +G+ F + R +P DER +T A +
Sbjct: 74 LHPDGAAHENTARALKFARQLRGR-FGLPVFEVDERYSTTEALSAGAADADAASA----- 127
Query: 137 DSIAAALILQEVL 149
+IL++ L
Sbjct: 128 -----CIILEQFL 135
>gi|166711264|ref|ZP_02242471.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 155
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
++ P+ + D+G++RIG+A+ A + L
Sbjct: 4 AGAILPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWGALDRVHKEWRPD 63
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
++G PL ++ + P AF + +R +P V DER ++V AQ+ +
Sbjct: 64 GLVVGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122
Query: 129 RKKRI 133
RK+R
Sbjct: 123 RKRRR 127
>gi|152990631|ref|YP_001356353.1| Holliday junction resolvase-like protein [Nitratiruptor sp.
SB155-2]
gi|151422492|dbj|BAF69996.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 130
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
IA+ID+G KRIG AI + P+ ++RK Q A ++ SF+ NI ++G+P
Sbjct: 3 SRIAAIDVGLKRIGTAIC-LDGKIVLPQTPIIRKNRNQAARDVSSFLREWNIDTLVVGIP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+G+ + A +++D F DE T+ A++ V + K+ K+
Sbjct: 62 ---DGTSKEEMQRRIAHFVSLLD--FDGVVEFVDEGFTSHEAKEATK--GVIKHKKDGKI 114
Query: 137 DSIAAALILQEVL 149
DSIAA IL+ L
Sbjct: 115 DSIAAQKILERWL 127
>gi|225453535|ref|XP_002275849.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 233
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R GLA+S P L + + L+LL E + FIIGLP++
Sbjct: 67 LGVDLGMSRTGLALS--KGFSVRPLSVLKLR-GQKLELQLLEIAGREEVDEFIIGLPVSD 123
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E P+ + R+ + R DE T+ A ++IDM S+ R ++D
Sbjct: 124 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSLMIDMGHSKSARQNRID 183
Query: 138 SIAAALILQEVL 149
+ AA ++L+
Sbjct: 184 AYAAMMVLERYF 195
>gi|162452820|ref|YP_001615187.1| putative Hollyday junction resolvase [Sorangium cellulosum 'So ce
56']
gi|161163402|emb|CAN94707.1| putative Hollyday junction resolvase [Sorangium cellulosum 'So ce
56']
Length = 163
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/116 (38%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
IDLG R+G+A++D +AHPRP L + L + E I F++GLPL MNG
Sbjct: 33 IDLGKARVGVAVTDELGLYAHPRPLLDGRNRKALLEALAALARDEGITRFLVGLPLEMNG 92
Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
EGP A + V DERLTTV A + L D VS +K ++VD
Sbjct: 93 DEGPAARRALA-FAQALADAAGVEVELVDERLTTVEAARRLRDGGVSGRKSKERVD 147
>gi|254525703|ref|ZP_05137755.1| conserved hypothetical protein TIGR00250 [Prochlorococcus marinus
str. MIT 9202]
gi|221537127|gb|EEE39580.1| conserved hypothetical protein TIGR00250 [Prochlorococcus marinus
str. MIT 9202]
Length = 140
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
D+GTKRIGLA DP ++ P + R + Q + + I N+ FI+G+PL+ G
Sbjct: 2 DVGTKRIGLAYCDPLCITSNILPPVKRLENNQEIKIIRNHINELNLTGFIVGIPLDDKGL 61
Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
+ + + +++ + +PF + +E +T + +K + +DS +A
Sbjct: 62 MTSQAIDCKNYGQLLLNE-LKLPFSYVNEHSSTWESSDRF----GIKKDKSGLIDSFSAK 116
Query: 143 LILQEVLDRISFLESSKG 160
+IL++ ++ LE G
Sbjct: 117 IILEQWIEEGPELEEIIG 134
>gi|325916092|ref|ZP_08178381.1| hypothetical protein TIGR00250 [Xanthomonas vesicatoria ATCC 35937]
gi|325537701|gb|EGD09408.1| hypothetical protein TIGR00250 [Xanthomonas vesicatoria ATCC 35937]
Length = 154
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+++P+ + D+G++RIG+A+ A + + L
Sbjct: 4 AAIRPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVHKEWRPNG 63
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILID-MNVS 128
++G PL ++ + P AF + R +P V DER ++V AQ+ + + S
Sbjct: 64 LVVGDPLTLDDKDQPARKRAHAFARELRAR-YALPVVLIDERSSSVEAAQRFARERADGS 122
Query: 129 RKKR 132
+++R
Sbjct: 123 KRRR 126
>gi|331697329|ref|YP_004333568.1| Holliday junction resolvase [Pseudonocardia dioxanivorans CB1190]
gi|326952018|gb|AEA25715.1| Holliday junction resolvase [Pseudonocardia dioxanivorans CB1190]
Length = 149
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 7/143 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTEN 67
ID+G R+G+A+SDP A P + R + E+ + + +
Sbjct: 4 PRRGRRLGIDVGAVRVGVALSDPDGMLATPLVTVARDLREAGDRSGSDLREIAALVAEHD 63
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+ I+GLP + G+EGP + RAF +++ + VP DERLTTV A + L + V
Sbjct: 64 VVQVIVGLPRTLAGAEGPAAAAARAFADDLV-AVLDVPVELSDERLTTVVATRQLRERGV 122
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
K++ VD AA ILQ LD
Sbjct: 123 KGKRQRAVVDQAAAVAILQGWLD 145
>gi|7635496|emb|CAB88667.1| hypothetical 19.6 kDa protein [Cicer arietinum]
Length = 171
Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 11/159 (6%)
Query: 2 SILLIEDLVKSL-KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALE 58
+ L DLVK+ K + +D+G K +GLA+SD + A P LVRKK A +
Sbjct: 6 PLQLFHDLVKTTQKERGRLIGLDVGDKYVGLALSDFDNKIASPFSVLVRKKTNINLMAAD 65
Query: 59 LLSFITTENIAAFIIGLP--LNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLT 114
S ++ ++ F+IGLP ++ + F+ N+ + + + +W+E T
Sbjct: 66 FKSLVSKYSLKGFVIGLPFDRHL---VSSDAVKVKVFIDNLRRTNMFDGLKYTYWNECFT 122
Query: 115 TVSAQQILIDMNVSRKKR-IQKVDSIAAALILQEVLDRI 152
+ + + ++ +N++ +D AA ILQ LD +
Sbjct: 123 SKNVEILIKPLNLNHPVHSKTMLDKFAAVGILQGYLDYV 161
>gi|226500782|ref|NP_001149481.1| holliday junction resolvase [Zea mays]
gi|195627468|gb|ACG35564.1| holliday junction resolvase [Zea mays]
Length = 235
Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R GLAI G F P L R + + L LL + IIGLP++
Sbjct: 75 LGVDLGDARTGLAIG-RGITFPRPLTVL-RLRGQKLELALLDVARQQEADELIIGLPVSA 132
Query: 80 NGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+GSE P+ + R+ V + + + DE T+ A +I V + R K D
Sbjct: 133 DGSETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALDYMISRGVKKSARDTKSD 192
Query: 138 SIAAALILQEVL 149
+ AA +IL+
Sbjct: 193 AYAAVMILKRYF 204
>gi|319764293|ref|YP_004128230.1| holliday junction resolvase yqgf [Alicycliphilus denitrificans BC]
gi|317118854|gb|ADV01343.1| Holliday junction resolvase YqgF [Alicycliphilus denitrificans BC]
Length = 137
Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 12/133 (9%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A+ R A P+ + R + + I A ++G+P
Sbjct: 13 QSFLAFDFGLKRTGVAVGTRMLRTATPQGTI-RAEGDARFAAVAERIREWQPDALVVGVP 71
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + R + DER +T A +
Sbjct: 72 CHPDGAPHENTARALKFARQLRGR-FGLQVFEVDERYSTTEALAAGAGDADAASA----- 125
Query: 137 DSIAAALILQEVL 149
+IL++ L
Sbjct: 126 -----CIILEQFL 133
>gi|85707967|ref|ZP_01039033.1| hypothetical protein NAP1_01990 [Erythrobacter sp. NAP1]
gi|85689501|gb|EAQ29504.1| hypothetical protein NAP1_01990 [Erythrobacter sp. NAP1]
Length = 85
Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLP NM+GSEGPR ++RAF N + +P + WDER +T SA+ +I ++SRKK
Sbjct: 1 MLGLPRNMDGSEGPRAQASRAFARN-AEEAFALPLLLWDERWSTQSAEAAMIGQDMSRKK 59
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
R + +DS AAA+ILQ +DR++
Sbjct: 60 RAESIDSHAAAVILQGAIDRLA 81
>gi|254482697|ref|ZP_05095935.1| conserved hypothetical protein TIGR00250 [marine gamma
proteobacterium HTCC2148]
gi|214037056|gb|EEB77725.1| conserved hypothetical protein TIGR00250 [marine gamma
proteobacterium HTCC2148]
Length = 98
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ + ++G PLNM+GS F + ++ +P DERL++ A+
Sbjct: 2 AALVDEWQPDLLVVGEPLNMDGSVSELSEKAHKFGRRL-GGRLNLPVQMVDERLSSFEAK 60
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVL 149
Q + +DS+AA LILQ L
Sbjct: 61 QQSRERGHGGDYNKNPIDSLAAELILQTWL 90
>gi|121606236|ref|YP_983565.1| Holliday junction resolvase-like protein [Polaromonas
naphthalenivorans CJ2]
gi|120595205|gb|ABM38644.1| Holliday junction resolvase YqgF [Polaromonas naphthalenivorans
CJ2]
Length = 156
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 12/138 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A + R A P+ + + V + L + + I A ++G+P
Sbjct: 30 QTFLAFDYGFKRTGVASGNILTRTATPQATIAAEGVARFPL-IQARIKEWQPDALVVGIP 88
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ + F + R + DER +T A +
Sbjct: 89 FHPDGASHDNTVRAQKFARQLRGR-FGLQVFEVDERYSTTEA----LASGAKDADAASA- 142
Query: 137 DSIAAALILQEVLDRISF 154
++IL++ L +
Sbjct: 143 -----SIILEQFLRSLPH 155
>gi|299473370|emb|CBN77768.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 296
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 6/142 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+P++ +D GT+R+GLAI A P V + + A ++L E I ++
Sbjct: 75 RPSRRTLCVDYGTRRVGLAIGVGISPRAVPGVTNVGSDL-EVARQVLVRARGEGIRDIVV 133
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
GLPL NG+E R F + D + WDER ++ A +L
Sbjct: 134 GLPLERNGTETEMCEIVRGFASVLADVGAASRPTAGVFLWDERFSSAQAAAMLDPYGGGM 193
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
+++ +DS+AA+LIL+ +
Sbjct: 194 SSKVE-IDSLAASLILKHFFEE 214
>gi|124023439|ref|YP_001017746.1| endonuclease [Prochlorococcus marinus str. MIT 9303]
gi|123963725|gb|ABM78481.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. MIT 9303]
Length = 214
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + + I S+DLG +RIGLA DP P P L RK + L T+ +
Sbjct: 54 MTATKPRPKSILSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFDRDLKALQRHCTSRKV 113
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLPL+ G + + + R + +P +E ++ +A +
Sbjct: 114 EGLVVGLPLDSKGLPTDQARHYERYGQRLA-RALKLPLALVNEHSSSWAAAERYNLQG-- 170
Query: 129 RKKRIQKVDS 138
R ++DS
Sbjct: 171 --DRSGQLDS 178
>gi|242309711|ref|ZP_04808866.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239523712|gb|EEQ63578.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 135
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
Q I ++D+G KRIG+A + P P ++RK Q A ++ + I +N +IG+
Sbjct: 1 MQNIIALDIGLKRIGIA--QFLQNIPIPLPPILRKNRNQAARDVSNLIQMKNPQILVIGI 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + + S + F+ N+++ + F DE ++ A Q + + KK+
Sbjct: 59 PQDGDSSL-EMERRIKHFI-NLLEIPKGIEICFIDESFSSFEALQKM-QGSKKNKKKDGS 115
Query: 136 VDSIAAALILQEVL 149
+DS+AA +IL+ L
Sbjct: 116 LDSLAALIILERYL 129
>gi|33861348|ref|NP_892909.1| hypothetical protein PMM0791 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|62901009|sp|Q7V1R4|RUVX_PROMP RecName: Full=Putative Holliday junction resolvase
gi|33633925|emb|CAE19250.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 151
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Query: 10 VKSLKPN-QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+K KP + I S+D+G KRIGLA D + P L R++ + + I N+
Sbjct: 1 MKYCKPKSKSILSLDVGLKRIGLAYCDSLFITVNILPALKRERNNNEIIIIKEHIKKHNL 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
FI+GLPL+ G + + + + + + +PF F +E +T + V
Sbjct: 61 TGFIVGLPLDEAGGMTSQALDCKTYGEFLFNE-LKLPFSFVNEHSSTWESTNRF---GV- 115
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+K + +DS++A +IL++ + L+ G
Sbjct: 116 KKDKSGLIDSLSAKIILEQWIQEGPELKELVG 147
>gi|222823946|ref|YP_002575520.1| conserved hypothetical protein (UPF0081 domain protein)
[Campylobacter lari RM2100]
gi|254767502|sp|B9KCI0|RUVX_CAMLR RecName: Full=Putative Holliday junction resolvase
gi|222539168|gb|ACM64269.1| conserved hypothetical protein (UPF0081 domain protein)
[Campylobacter lari RM2100]
Length = 128
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIG+A+ + A P ++RK Q A E+ +I ++ ++G+PL
Sbjct: 4 LALDIGLKRIGVALC-VNKSIAMPLEAIIRKNRNQAANEVKKYIKEYDVNTLVVGVPLGG 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ SE F+ + F DE ++ +AQ++ + V+ KK+ K+DS+
Sbjct: 63 S-SEDEMRKRVEHFISLL---DFDKEVFFVDESFSSKNAQELGM---VNLKKKDGKLDSL 115
Query: 140 AAALILQEV 148
AA L L++
Sbjct: 116 AAYLFLKDF 124
>gi|87303490|ref|ZP_01086273.1| hypothetical protein WH5701_09525 [Synechococcus sp. WH 5701]
gi|87281903|gb|EAQ73866.1| hypothetical protein WH5701_09525 [Synechococcus sp. WH 5701]
Length = 161
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
P + + ++D+G +RIGLA DP P L R L + + A ++
Sbjct: 6 PPPRSVLALDVGRRRIGLAGCDPLGLTVTPLAPLARGAFPADLERLRPLVAQRRVQALVV 65
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
GLPL+ + + R + + + + +P + DE ++ A ++ + + S +
Sbjct: 66 GLPLDASQQPTVQARHCRRYGQRLA-QALELPLAWVDEHGSSWEAGERRGLHGDRSGQ 122
>gi|261414429|ref|YP_003248112.1| Holliday junction resolvase YqgF [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261370885|gb|ACX73630.1| Holliday junction resolvase YqgF [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 134
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D G R+G+A D + A R + +K T L + I F++G+P +
Sbjct: 1 MALDYGEHRVGVAFGDSELKMAFSRETI-DQKTTNLFERLDQLVRLNKIDEFVVGMPYHP 59
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKKRIQKVDS 138
+G + + AF+ ++ R + DE ++V AQ+ M+ ++K +D
Sbjct: 60 DGRKDGKNVVVEAFIKDLTLRFPGMKIHTQDESYSSVQAQEFTSYMSKKKKQKNKAIIDR 119
Query: 139 IAAALILQEVLDR 151
AAA+ILQ D
Sbjct: 120 TAAAIILQRWFDE 132
>gi|291533812|emb|CBL06925.1| Predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Megamonas hypermegale ART12/1]
Length = 75
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G R + F +++ +FWDERL+TV+A + L++ +VSR KR + +D
Sbjct: 1 MNGTVGERCDIVKHFTDKILEDIPDAEIIFWDERLSTVAADRYLLEADVSRAKRKKVIDK 60
Query: 139 IAAALILQEVLDRIS 153
+AA ILQ LD +
Sbjct: 61 MAAVFILQGYLDSLK 75
>gi|33240317|ref|NP_875259.1| endonuclease [Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|62901011|sp|Q7VC75|RUVX_PROMA RecName: Full=Putative Holliday junction resolvase
gi|33237844|gb|AAP99911.1| Predicted endonuclease [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 153
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 5/143 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ S D G KRIGLA DP + R + + S I I+
Sbjct: 4 PKPTSVLSFDYGHKRIGLAGCDPLGITVTALSPIHRISFQKDLTLIKSLCIEREIKGLIV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ +G + + + + + +P + +E ++ A Q N R
Sbjct: 64 GLPLDESGQNTVQSIHCQNYGIKIAKE-LDLPLAWVNEHSSSWDAGQKYNLQN----DRT 118
Query: 134 QKVDSIAAALILQEVLDRISFLE 156
K+DS AAL+L++ L L+
Sbjct: 119 GKLDSAVAALLLEQWLREGPELQ 141
>gi|134098623|ref|YP_001104284.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
2338]
gi|133911246|emb|CAM01359.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
2338]
Length = 124
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 39 RFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97
A P L R + L+ + + ++G+P + G GP + ++ +
Sbjct: 1 MLATPLVTLQRDVEGGGDLGRLVEIVAEHEVVEVVVGMPRTLAGRHGPAAEAAESYGTAL 60
Query: 98 IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
+R VP V+ DERLTTV+A ++L V KK+ VD AA ILQ LD
Sbjct: 61 AERIAPVPVVYSDERLTTVTASRMLSKRGVRGKKQRAVVDQAAAVEILQAWLDS 114
>gi|251773417|gb|EES53966.1| Holliday junction resolvase YqgF [Leptospirillum ferrodiazotrophum]
Length = 168
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVR--------KKVTQTALELLSFITTENIAA 70
+ ID G +R+G+A+SDP R A P LVR ++ + L T ++
Sbjct: 11 LMGIDWGGRRVGVALSDPSRTLARPLTVLVRDGSGTIPFQEGEKLLASLRKIATDHDVTG 70
Query: 71 FIIGLP-LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
+ G+P +++G P ++ R + +P DE ++ A + + + R
Sbjct: 71 LVFGIPYYHLSGDPNPHAPLFLRVARDL-SRDLALPLFLHDEGQSS-EAAREIRKGHPGR 128
Query: 130 KKRIQKVDSIAAALILQEVLD 150
+ Q +D +AAA +LQ LD
Sbjct: 129 RNSAQSLDHVAAATLLQGFLD 149
>gi|330826424|ref|YP_004389727.1| Holliday junction resolvase [Alicycliphilus denitrificans K601]
gi|329311796|gb|AEB86211.1| Holliday junction resolvase [Alicycliphilus denitrificans K601]
Length = 139
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 10/133 (7%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A+ R A P+ + R + + I A ++G+P
Sbjct: 13 QSFLAFDFGLKRTGVAVGTRMLRTATPQGTI-RAEGDARFAAVAERIREWQPDALVVGVP 71
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + R + DER +T A +
Sbjct: 72 CHPDGAPHENTARALKFSRQLRGR-FGLQVFEVDERYSTTEALAAGAGDADADAASA--- 127
Query: 137 DSIAAALILQEVL 149
+IL++ L
Sbjct: 128 -----CIILEQFL 135
>gi|190573126|ref|YP_001970971.1| Holliday junction resolvase-like protein [Stenotrophomonas
maltophilia K279a]
gi|190011048|emb|CAQ44657.1| putative resolvase [Stenotrophomonas maltophilia K279a]
Length = 164
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 2/128 (1%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
+ +++ + + D+G++RIG+AI A + + +
Sbjct: 10 DSAAPAIRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWTAIERLLKEW 69
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDM 125
++G PL ++G + P + F + +R +P V DER ++V A++ ++
Sbjct: 70 KPDGLVVGDPLTLDGQDQPNRKRAQGFARQLRER-FKLPVVMIDERSSSVEAARRFAVER 128
Query: 126 NVSRKKRI 133
RK+R
Sbjct: 129 AEGRKRRR 136
>gi|320534358|ref|ZP_08034845.1| conserved hypothetical protein TIGR00250 [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133440|gb|EFW25901.1| conserved hypothetical protein TIGR00250 [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 129
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 46 FLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-YV 104
L R + E + + I+GLP +M G RA+ ++ R V
Sbjct: 3 TLRRDRYGADLDEAVDLVEEYGAFEVIVGLPKHMGGGSSSSTRDARAWARDLASRLPRQV 62
Query: 105 PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL--DRISFLESSK 159
DERLTTV+A + L + + VD AA +IL++ + +R+S + + +
Sbjct: 63 CVRLVDERLTTVTAHRDLHAAGMKERSFRGIVDQAAAVVILEQAITTERMSGVPAGE 119
>gi|193214622|ref|YP_001995821.1| Holliday junction resolvase YqgF [Chloroherpeton thalassium ATCC
35110]
gi|193088099|gb|ACF13374.1| Holliday junction resolvase YqgF [Chloroherpeton thalassium ATCC
35110]
Length = 143
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + +ID GTKR GLA +DP + F+ + + E+ + I ++G
Sbjct: 7 KKRVLAIDFGTKRCGLAKTDPFQLFSQTVGTFEEATLYKQIREIEKL---DGIEKILVGY 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P N +GS + F+ + +P DE ++ +A ++LI RK R
Sbjct: 64 PTNGDGSANHTTKAVDGFLERLSLEFSTIPIEPIDEFGSSKAAMRLLIASGEKRKSRQKK 123
Query: 134 QKVDSIAAALILQEVLDRIS 153
++DS AAAL+LQ L+R
Sbjct: 124 GRLDSAAAALLLQNYLERQR 143
>gi|254523604|ref|ZP_05135659.1| conserved hypothetical protein TIGR00250 [Stenotrophomonas sp.
SKA14]
gi|219721195|gb|EED39720.1| conserved hypothetical protein TIGR00250 [Stenotrophomonas sp.
SKA14]
Length = 155
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 2/125 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+++ + + D+G++RIG+AI A + + +
Sbjct: 4 AAAIRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWAAIERLLKEWKPD 63
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
++G PL ++G P + F + +R +P V DER ++V A++ ++
Sbjct: 64 GLVVGDPLTLDGQNQPNRKRAQGFARQLRER-FKLPVVMIDERSSSVEAARRFAVERAEG 122
Query: 129 RKKRI 133
RK+R
Sbjct: 123 RKRRR 127
>gi|171060631|ref|YP_001792980.1| Holliday junction resolvase-like protein [Leptothrix cholodnii
SP-6]
gi|170778076|gb|ACB36215.1| Holliday junction resolvase YqgF [Leptothrix cholodnii SP-6]
Length = 149
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 2/109 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
++ Q S D G KR G+A + A P + + + I
Sbjct: 8 AAVVRAPQTFLSFDYGRKRTGVASGNRVFGQATPLTTVTAE-GDARFERIARLIAEWQPD 66
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
A ++G+P + +G+ + F + R +P DER +T
Sbjct: 67 ALVVGVPRHPDGAPHENTRLAQRFARQLHGR-FRLPVFEVDERYSTTEV 114
>gi|254432757|ref|ZP_05046460.1| conserved hypothetical protein TIGR00250 [Cyanobium sp. PCC 7001]
gi|197627210|gb|EDY39769.1| conserved hypothetical protein TIGR00250 [Cyanobium sp. PCC 7001]
Length = 167
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ + ++D+G +RIGLA DP P L R + L + + A ++
Sbjct: 4 PRPRSVLALDVGRRRIGLAGCDPLGLTVRRLPALARGRFPADLQRLQELLAERRVEALVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSR 129
GLPL+ G + R + + +P + +E +T +A++ + + S
Sbjct: 64 GLPLDQAGQPTEQARHCRRYGERLAVG-TGLPLAWVNEHGSTWSAAERHGLHGDRSG 119
>gi|194364719|ref|YP_002027329.1| Holliday junction resolvase-like protein [Stenotrophomonas
maltophilia R551-3]
gi|194347523|gb|ACF50646.1| Holliday junction resolvase YqgF [Stenotrophomonas maltophilia
R551-3]
Length = 164
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++ + + D+G++RIG+AI A + + I +
Sbjct: 16 IRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWTAIERLIKEWKPDGLV 75
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVSRKK 131
+G PL ++G + P + F + +R +P V DER ++V A++ ++ RK+
Sbjct: 76 VGDPLTLDGQDQPNRKRAQGFARQLRER-FKLPVVMIDERSSSVEAARRFAVERAEGRKR 134
Query: 132 RI 133
R
Sbjct: 135 RR 136
>gi|149193947|ref|ZP_01871045.1| Holliday junction resolvase-like protein [Caminibacter
mediatlanticus TB-2]
gi|149135900|gb|EDM24378.1| Holliday junction resolvase-like protein [Caminibacter
mediatlanticus TB-2]
Length = 130
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +ID+G KRIG+A + P P ++RK Q A E+ + + ++G+
Sbjct: 1 MERIIAIDVGLKRIGIAYT-PNASVVVPLNAIIRKNRNQAAKEVSNLLKEYKADILVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + + F N+ID F DE T+ ++ + + KR +
Sbjct: 60 PK----TNEEMTKRIKHF-TNLID--FNGKIEFVDESFTSAIVEEEIK--GKIKHKRDGR 110
Query: 136 VDSIAAALILQEVL 149
+DS+AA IL+ L
Sbjct: 111 IDSLAAKKILESFL 124
>gi|72162468|ref|YP_290125.1| Holliday junction resolvase-like protein [Thermobifida fusca YX]
gi|134048664|sp|Q47N67|RUVX_THEFY RecName: Full=Putative Holliday junction resolvase
gi|71916200|gb|AAZ56102.1| Holliday junction resolvase YqgF [Thermobifida fusca YX]
Length = 159
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D G RIG+A SDP A P + R + + + I+G P ++
Sbjct: 7 LAVDPGAARIGVARSDPDGILAIPVETIRR--GPGDLDRIAALVLEYEAREVIVGYPASL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS-------RKKR 132
+G+EG + RAF + R VP DERLTTV+A+ L + R
Sbjct: 65 SGAEGRAARAARAFAKALARRLAPVPVRLVDERLTTVTAELHLRTGASYRKRGARGGRAR 124
Query: 133 IQKVDSIAAALILQEVLD 150
+D AA ++LQ LD
Sbjct: 125 RSVIDQAAATVLLQNALD 142
>gi|297170741|gb|ADI21763.1| predicted endonuclease involved in recombination (possible holliday
junction resolvase in Mycoplasmas and B. subtilis)
[uncultured gamma proteobacterium HF0130_22O14]
Length = 141
Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G ++G+AI A P +V + + + I I+G
Sbjct: 2 SSTFIAFDFGMTKMGIAIGQNITNTASPLDPMVMRNGSPDWDLVERLIKEYRPTTIILGK 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI----DMNVSRKK 131
P ++ S + +AF ++ ++ + E LT+ A++ L + +SRK
Sbjct: 62 PKVIDESSETLMKKIKAFKRSL-EKDFSQNVEWTPEHLTSKDAKEKLKVRRQEGILSRKI 120
Query: 132 RIQKVDSIAAALILQEVLDR 151
++DS+AAA+ LQ+ +++
Sbjct: 121 MKGQIDSMAAAIFLQDWMNQ 140
>gi|289664581|ref|ZP_06486162.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. vasculorum NCPPB702]
gi|289670433|ref|ZP_06491508.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. musacearum NCPPB4381]
Length = 155
Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
++ + + D+G++RIG+A+ A + + L +
Sbjct: 4 AGVIRSDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWVALDRVHKEWHPD 63
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
+IG PL ++ + P AF + +R +P V DER ++V AQ+ +
Sbjct: 64 GLVIGDPLTLDDKDQPARKRAHAFARQLRER-YALPVVLIDERSSSVEAAQRFARERADG 122
Query: 129 RKKRIQ 134
RK+R
Sbjct: 123 RKRRRD 128
>gi|329946644|ref|ZP_08294056.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 170
str. F0386]
gi|328526455|gb|EGF53468.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 170
str. F0386]
Length = 129
Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 46 FLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-V 104
L R + E + + I+GLP +M G R + ++ R V
Sbjct: 3 TLRRDRYGADLDEAVDLVDEYGAFEVIVGLPKHMGGGSSSSTRDARRWARDLASRLPQRV 62
Query: 105 PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL--DRISFLESSK 159
DERLTTV+A + L + + VD AA +IL++ + +R+S + + +
Sbjct: 63 CVRLVDERLTTVTAHRDLHAAGLKERSFRGIVDQAAAVVILEQAITTERMSGVPAGE 119
>gi|332524147|ref|ZP_08400377.1| Holliday junction resolvase-like protein [Rubrivivax
benzoatilyticus JA2]
gi|332107486|gb|EGJ08710.1| Holliday junction resolvase-like protein [Rubrivivax
benzoatilyticus JA2]
Length = 136
Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D G +R+G+A+ + A P + + + I A ++G+P
Sbjct: 11 RSFLAFDFGVRRVGVAVGNTLLAEARPLKTVAAE-GDARFEAIARLIDEWQPDALVVGVP 69
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116
+ +G+E R F + R +P DER TTV
Sbjct: 70 FHPDGAEHDNTRRARRFARQLHGR-FRLPVHEVDERYTTV 108
>gi|285018920|ref|YP_003376631.1| holliday junction resolvase [Xanthomonas albilineans GPE PC73]
gi|283474138|emb|CBA16639.1| putative holliday junction resolvase protein [Xanthomonas
albilineans]
Length = 165
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 1/115 (0%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
D +L+ + + D+G +RIG+A+ A + L
Sbjct: 11 TDGAATLRHDGTVLGFDVGHRRIGVAVGSRFGSGARALAVIDVHAQGPDWPALDRLHAQW 70
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
++G PL ++G++ P AF + + +P V DER ++V A Q
Sbjct: 71 RPHGLVVGDPLTLDGADQPNRKRAHAFAREL-GARYCLPVVLVDERSSSVEAAQR 124
>gi|289524577|ref|ZP_06441431.1| putative Holliday junction resolvase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289502182|gb|EFD23346.1| putative Holliday junction resolvase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 107
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
G+ RIG+AISDP FA FL + L L I N+ +IGLP+ NG +
Sbjct: 2 GSVRIGIAISDPLGIFAQGVGFLNAQGSWLEDLAL--LIRKHNVKKVVIGLPIRTNGKKD 59
Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+ + + + F+ WDER TT AQ L D +S KK+
Sbjct: 60 READAISDLTDKLKEIFPDITFILWDERFTTTIAQNYLRDSGMSGKKK 107
>gi|300870810|ref|YP_003785681.1| Holliday junction resolvase-like protein [Brachyspira pilosicoli
95/1000]
gi|300688509|gb|ADK31180.1| holliday junction resolvase-like protein [Brachyspira pilosicoli
95/1000]
Length = 137
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G K+ G A D + P + + L+ I + I + GLPL+
Sbjct: 3 ILAVDFGRKKTGTAFMDMNIKIPFPCKLIEESNARKVKRALMDIIEEKKIDTVVFGLPLS 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G E R F ++ V V VF DE T+ A IL + + + D
Sbjct: 63 DEGKESEWCAEIRRFSEFLLK-SVKVNIVFVDEYGTSKEADFILR--GKKKSVKKKANDL 119
Query: 139 IAAALILQEVLDRIS 153
IAA LIL+ L+ ++
Sbjct: 120 IAAVLILENYLNILN 134
>gi|78184360|ref|YP_376795.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9902]
gi|146325619|sp|Q3AYS6|RUVX_SYNS9 RecName: Full=Putative Holliday junction resolvase
gi|78168654|gb|ABB25751.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9902]
Length = 164
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ S+D+G KRIGLA DP P P L R + L L T ++ ++GLPL
Sbjct: 13 SVLSLDVGRKRIGLAGCDPLGITVSPLPALHRGRFDNDLLVLRHHCQTRSVQGLVVGLPL 72
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
+ G + R + + + + +P + +E +T +A ++ + + + +
Sbjct: 73 DAAGQPTAQAEHCRRYGVRLA-QSLGLPLAWVNEHSSTWAAGERHGLQGDRTGR 125
>gi|13357930|ref|NP_078204.1| hypothetical protein UU370 [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|167971754|ref|ZP_02554031.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
ATCC 27818]
gi|168282623|ref|ZP_02690290.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
ATCC 33697]
gi|168308781|ref|ZP_02691456.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
ATCC 27813]
gi|170761903|ref|YP_001752453.1| hypothetical protein UPA3_0386 [Ureaplasma parvum serovar 3 str.
ATCC 27815]
gi|32130073|sp|Q9PQC1|RUVX_UREPA RecName: Full=Putative Holliday junction resolvase
gi|189046111|sp|B1AJ09|RUVX_UREP2 RecName: Full=Putative Holliday junction resolvase
gi|11356807|pir||E82899 conserved hypothetical UU370 [imported] - Ureaplasma urealyticum
gi|6899352|gb|AAF30779.1|AE002134_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|168827480|gb|ACA32742.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str.
ATCC 27815]
gi|171902629|gb|EDT48918.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
ATCC 27813]
gi|182675714|gb|EDT87619.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
ATCC 33697]
gi|186701151|gb|EDU19433.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
ATCC 27818]
Length = 147
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT------ENIAAFII 73
++DLGTK G AISD A + ++ +L+ I I ++
Sbjct: 4 LALDLGTKSCGFAISDLLGIIASGLDNFIYEE--NDFTAVLAKIDEIMINYHHEIDTIVL 61
Query: 74 GLPLNM-NGSEGPRVHSTRAFVHNMIDRKVY---VPFVFWDERLTTVSAQQILIDMNVSR 129
G P N+ +GS+ R + +F + + + V+ DER +T A Q L + V
Sbjct: 62 GYPTNVYDGSKNERTYLIESFYALLKQHFLNHEKIKIVYEDERFSTKIATQRLKNSCVKA 121
Query: 130 KKRIQKVDSIAAALILQEVL 149
K + D ++A +IL+ L
Sbjct: 122 AKIKKVKDKMSAVVILESYL 141
>gi|87124358|ref|ZP_01080207.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9917]
gi|86167930|gb|EAQ69188.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9917]
Length = 158
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+G +RIGLA DP P L R++ + L + ++GLPL+
Sbjct: 1 MSLDVGRRRIGLAGCDPLGITVRPLAALQRRRFPEDLAHLRDLCLQRRVELLVVGLPLDR 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
NG + + + + + + +P + +E ++ +A + L R K+DS
Sbjct: 61 NGQPTEQAMHCQRYGLRLAEA-LQLPLAWINEHSSSWAAGEALGLHG----DRSGKLDS 114
>gi|225619635|ref|YP_002720892.1| Holliday junction resolvase [Brachyspira hyodysenteriae WA1]
gi|225214454|gb|ACN83188.1| Holliday junction resolvase [Brachyspira hyodysenteriae WA1]
Length = 139
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID G K+ G A D + P + + L+ I +NI + GLPL+
Sbjct: 2 VLGIDFGRKKTGTAFMDMDIKIPFPCRLIEESNARKVKRALMDIIEEKNIDTVVFGLPLS 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G E R F ++ V V VF DE T+ A IL +K + + D
Sbjct: 62 DEGKESDWCAEIRRFSEFLLK-SVKVDIVFVDEYGTSKEADFILR--GKKKKVKNKANDL 118
Query: 139 IAAALILQEVLDRISF 154
IAA LIL+ L+ ++
Sbjct: 119 IAATLILENYLNVLNM 134
>gi|224437002|ref|ZP_03657983.1| Holliday junction resolvase-like protein [Helicobacter cinaedi CCUG
18818]
gi|313143475|ref|ZP_07805668.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313128506|gb|EFR46123.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 140
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D+G KRIGLA++ G P ++RK Q + EL + T I ++GL
Sbjct: 3 NKKILACDVGLKRIGLAVTQLGIIL--PIEPIIRKNRNQASKELSEILKTREIEILVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK---KR 132
P FV + + DE T++ A Q M V + ++
Sbjct: 61 PSGGEAGHSDTRKRILHFVGLVA---FGGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQK 117
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
++DS++A LIL+ L+ + L
Sbjct: 118 DGRLDSLSATLILERFLESNNPL 140
>gi|218288664|ref|ZP_03492941.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
LAA1]
gi|218241321|gb|EED08496.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
LAA1]
Length = 105
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
E + ++G PL+M+G F M+ + +P +DERLTTVSA+
Sbjct: 2 ADLSRREEVGRIVVGRPLHMSGQPSEMTSRAEKFA-RMLAARTGLPVDLYDERLTTVSAE 60
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVL 149
+ILI+ NV R++R VD+ AA ++L++ L
Sbjct: 61 RILIEQNVRRRERRATVDAAAAQVLLEDYL 90
>gi|296274383|ref|YP_003657014.1| Holliday junction resolvase YqgF [Arcobacter nitrofigilis DSM 7299]
gi|296098557|gb|ADG94507.1| Holliday junction resolvase YqgF [Arcobacter nitrofigilis DSM 7299]
Length = 126
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ASID+G KRIG+A+S + P+ ++RK Q + ++ +F+ I I+G P
Sbjct: 2 KLASIDIGLKRIGVALS-LTKTIVTPQTAILRKNRNQASNDVDNFLKEWEIEKLIVGFPS 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ + + FV+ + K VF +E ++++ A++++ + KR +VD
Sbjct: 61 SSD----DMQKRVKHFVNLL---KFEGEIVFQEENMSSIEAEELMK--GDIKYKRDGRVD 111
Query: 138 SIAAALILQEVL 149
S+AA +IL+ L
Sbjct: 112 SLAAKIILERYL 123
>gi|167972674|ref|ZP_02554951.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
str. ATCC 27817]
gi|167974599|ref|ZP_02556876.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
str. ATCC 33695]
gi|167976242|ref|ZP_02558519.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
str. ATCC 33696]
gi|167988740|ref|ZP_02570411.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
str. ATCC 27819]
gi|168363072|ref|ZP_02696246.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
str. ATCC 33698]
gi|195867885|ref|ZP_03079884.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
str. ATCC 33175]
gi|198273722|ref|ZP_03206257.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
str. ATCC 27816]
gi|209554058|ref|YP_002284772.1| hypothetical protein UUR10_0379 [Ureaplasma urealyticum serovar 10
str. ATCC 33699]
gi|225550702|ref|ZP_03771651.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
str. ATCC 27814]
gi|225551167|ref|ZP_03772113.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
str. ATCC 27618]
gi|226695314|sp|B5ZBI2|RUVX_UREU1 RecName: Full=Putative Holliday junction resolvase
gi|171903041|gb|EDT49330.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
str. ATCC 33698]
gi|184209165|gb|EDU06208.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
str. ATCC 27817]
gi|188018995|gb|EDU57035.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
str. ATCC 27819]
gi|188997817|gb|EDU66914.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
str. ATCC 33695]
gi|195659638|gb|EDX53018.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
str. ATCC 33696]
gi|195660462|gb|EDX53720.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
str. ATCC 33175]
gi|198249750|gb|EDY74531.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
str. ATCC 27816]
gi|209541559|gb|ACI59788.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 10
str. ATCC 33699]
gi|225378982|gb|EEH01347.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
str. ATCC 27618]
gi|225379856|gb|EEH02218.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
str. ATCC 27814]
Length = 147
Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT------ENIAAFII 73
++DLGTK G AISD A + ++ + +L+ I I ++
Sbjct: 4 LALDLGTKSCGFAISDLLGIIASGLDNFIYEE--NDFIAVLAKIDEIMINYHHEIDTIVL 61
Query: 74 GLPLNM-NGSEGPRVHSTRAFVHNMIDRKVY---VPFVFWDERLTTVSAQQILIDMNVSR 129
G P N+ +GS+ R + +F + + + V+ DER +T A Q L + V
Sbjct: 62 GYPTNVYDGSKNKRTYLIESFYTLLKQHFLNHEKIKIVYEDERFSTKIATQRLKNSCVKA 121
Query: 130 KKRIQKVDSIAAALILQEVL 149
K + D ++A +IL+ L
Sbjct: 122 AKIKKVKDKMSAVVILESYL 141
>gi|262341228|ref|YP_003284083.1| Holliday junction resolvase-like protein [Blattabacterium sp.
(Blattella germanica) str. Bge]
gi|262272565|gb|ACY40473.1| Holliday junction resolvase-like protein [Blattabacterium sp.
(Blattella germanica) str. Bge]
Length = 140
Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D G GL+I+D + FA + +K+ L SF+ E I +IGL
Sbjct: 1 MAKILGMDYGKVITGLSITDDEQIFAFGLDSVPTEKLMSF---LESFLYHEKIDKIVIGL 57
Query: 76 PLNMNGS-EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +N E + F+++ R + DER T+ A +I++ + +K+R +
Sbjct: 58 PKKLNNQKETLIETDIQRFINHFRVRFPKILIERLDERFTSKMAFNAMIELGLKKKRRKK 117
Query: 135 KV-DSIAAALILQEVLDR 151
+ + I+A +ILQ L R
Sbjct: 118 VILNQISATIILQSYLAR 135
>gi|168021153|ref|XP_001763106.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685589|gb|EDQ71983.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 172
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 8/138 (5%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG + GLAIS G P +VR++ + +L + F++GLP
Sbjct: 16 VGVDLGDAKTGLAIS-LGGYAPRPL-TVVRQRGDKLLETILQVGIPQRADEFVVGLPKAW 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV------PFVFWDERLTTVSAQQILIDMNVSRKKRI 133
+G + + + R+F + + V DE T+ A +IDM +R+ R
Sbjct: 74 DGKDSDQANKCRSFAGRLANIAGVVAYCRGWRVYLQDEYGTSQDALDYMIDMGSNRRSRK 133
Query: 134 QKVDSIAAALILQEVLDR 151
+++D+ AA +L +
Sbjct: 134 EQLDAYAATALLCRYFES 151
>gi|144575317|gb|AAZ53576.2| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448]
gi|312601160|gb|ADQ90415.1| Putative Holliday junction resolvase [Mycoplasma hyopneumoniae 168]
Length = 91
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ I+ ++G PL + G PR F +++ + + VF DERLTT AQ L
Sbjct: 1 MKEYPISILVLGYPLTLAGKISPRTKMVEYFA-DLVKKNYEIKVVFQDERLTTKQAQTFL 59
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150
+D+ +S KKR + +D +AA +IL+ L+
Sbjct: 60 LDLGISFKKRQKVIDKLAAQIILERFLN 87
>gi|239917772|ref|YP_002957330.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
gi|281413734|ref|ZP_06245476.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
gi|239838979|gb|ACS30776.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
Length = 189
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFII 73
+D+G R+G+A +DP A P L + + EL++ ++ A +
Sbjct: 32 RRGRTLGVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDELVAHARELDVVAVYV 91
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDMNVSR 129
GLP+N+ G P + + VP DERL+TVSAQ L S
Sbjct: 92 GLPVNLRGEHTPSTQDALDYADAVAAALAEAGHPVPLRLVDERLSTVSAQAGLRAAGRSV 151
Query: 130 KKRIQKVD 137
K +D
Sbjct: 152 KDSRGVID 159
>gi|256370664|ref|YP_003108489.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri SMDSEM]
gi|256009456|gb|ACU52816.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri SMDSEM]
Length = 138
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ID GTKRIGL+I P R A L + +I + I +IG
Sbjct: 1 MSKILCIDFGTKRIGLSI--PIRSIAFGLETLETVDYNHLIATIDKYIKNKYIDTLVIGH 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM--NVSRKKRI 133
PL + S P F++ + + DER ++ A LI+ N ++K+
Sbjct: 59 PLKSDKSLFPIEKDIIKFINFFKTKYPKLIIKRIDERFSSKIANYFLINSFFNKKKRKQK 118
Query: 134 QKVDSIAAALILQEVL 149
+ +D I+A L+LQ+ +
Sbjct: 119 KILDQISAILLLQDFI 134
>gi|254456769|ref|ZP_05070197.1| conserved hypothetical protein TIGR00250 [Campylobacterales
bacterium GD 1]
gi|207085561|gb|EDZ62845.1| conserved hypothetical protein TIGR00250 [Campylobacterales
bacterium GD 1]
Length = 131
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+IDLG KRIGLA S + P P ++RK Q + E+ + + A +IG+PL
Sbjct: 4 IAIDLGLKRIGLAYS-AHKDLVTPLPAIMRKNRNQASAEVKKALKEWEVDAVVIGVPLG- 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
GS + A N+++ ++ DE +++ A+ ++ + R ++DSI
Sbjct: 62 -GSSEDEMRRRIAHFMNLVN--FEGEILYQDEAGSSLEAENMMK--GEIKYIRDGRIDSI 116
Query: 140 AAALILQEVL 149
+A +ILQ L
Sbjct: 117 SAMIILQRYL 126
>gi|315635642|ref|ZP_07890905.1| Holliday junction resolvase family protein [Arcobacter butzleri
JV22]
gi|315479939|gb|EFU70609.1| Holliday junction resolvase family protein [Arcobacter butzleri
JV22]
Length = 126
Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 10/132 (7%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ASID+G KRIG+AI P+ ++RK Q A ++ +F+ I I+G P
Sbjct: 2 KLASIDVGLKRIGVAIC-LTSDIVTPQNAILRKNRNQAANDVNTFLKEWEIEKLIVGFPT 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
S + + FV+ + K+ +P+ F +E ++++ A++++ + KR +VD
Sbjct: 61 ----SSEDMQNRIKHFVNLL---KLQIPYEFCEENMSSIEAEELIK--GEIKYKRDGRVD 111
Query: 138 SIAAALILQEVL 149
S+AA +IL+ L
Sbjct: 112 SLAAKIILERYL 123
>gi|78776727|ref|YP_393042.1| Holliday junction resolvase-like protein [Sulfurimonas
denitrificans DSM 1251]
gi|146325623|sp|Q30T74|RUVX_SULDN RecName: Full=Putative Holliday junction resolvase
gi|78497267|gb|ABB43807.1| Holliday junction resolvase YqgF [Sulfurimonas denitrificans DSM
1251]
Length = 130
Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+IDLG KRIGLA S + P + RK Q A ++ + + A ++G+PL
Sbjct: 4 IAIDLGLKRIGLAYS-AHKDLVTPLKAVERKNRDQAARDVKKTLIEWEVDAVVVGIPLGG 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ + R H M + DE +++ A+ ++ + R ++DSI
Sbjct: 63 SSED----EMRRRVAHFMNLVAFEGEIFYQDESNSSIEAESMMR--GEIKYIRDGRIDSI 116
Query: 140 AAALILQEVL 149
+A +ILQ L
Sbjct: 117 SAMIILQRYL 126
>gi|224373180|ref|YP_002607552.1| Holliday junction resolvase-like protein [Nautilia profundicola
AmH]
gi|223588874|gb|ACM92610.1| conserved hypothetical protein [Nautilia profundicola AmH]
Length = 130
Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 11/134 (8%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ID+G KRIG+A S+ P P ++RK Q A + + I ++GL
Sbjct: 1 MEKIIGIDVGLKRIGVAFSN--GSVVVPLPAIIRKNRNQAANDTMKIINEYKADTLVVGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL + R FV + VF DE T+ ++ + V + K+ +
Sbjct: 59 PL----TNEEMQRRIRHFVSLL---PFEGKIVFVDESYTSAEVEEEIK--GVIKHKKDGR 109
Query: 136 VDSIAAALILQEVL 149
+DS+ A +++ L
Sbjct: 110 IDSLVAKKLIENYL 123
>gi|88808661|ref|ZP_01124171.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 7805]
gi|88787649|gb|EAR18806.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 7805]
Length = 151
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+G +RIGLA D P P L R Q L + N+ ++GLPLN
Sbjct: 2 LSLDVGRRRIGLAGCDALGLTVSPLPALHRGSHAQNLHHLRTLCQHRNVKGLVVGLPLND 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSRK 130
G + H R + + R + +P F +E ++ +A++ + + S +
Sbjct: 62 QGQPTDQAHHCRRYGRRIA-RDLGLPLAFVNEHSSSWAAAERHGLQGDRSGR 112
>gi|157736482|ref|YP_001489165.1| Holliday junction resolvase-like protein [Arcobacter butzleri
RM4018]
gi|157698336|gb|ABV66496.1| conserved hypothetical protein, putative Holliday junction
resolvase [Arcobacter butzleri RM4018]
Length = 126
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 10/132 (7%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ASID+G KRIG+AI P+ ++RK Q A ++ +F+ I I+G P
Sbjct: 2 KLASIDVGLKRIGVAIC-LTSDIVTPQNAILRKNRNQAANDVNTFLKEWEIEKLIVGFPT 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
S + + FV+ + ++ +P+ F +E ++++ A++++ + KR +VD
Sbjct: 61 ----SSEDMQNRIKHFVNLL---ELQIPYEFCEENMSSIEAEELIK--GEIKYKRDGRVD 111
Query: 138 SIAAALILQEVL 149
S+AA +IL+ L
Sbjct: 112 SLAAKIILERYL 123
>gi|33865313|ref|NP_896872.1| hypothetical protein SYNW0779 [Synechococcus sp. WH 8102]
gi|62901007|sp|Q7U845|RUVX_SYNPX RecName: Full=Putative Holliday junction resolvase
gi|33632482|emb|CAE07294.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 157
Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + S+D+G KRIGLA DP P L R + L + +
Sbjct: 1 MPRPCSVLSLDVGRKRIGLAGCDPLGITVTPIKALHRGRFDDDLPVLQQLCQDRRVQGLV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
+GLPL+ G + + + + + +P + +E +T +A ++ + + S +
Sbjct: 61 VGLPLDAAGQPTAQADHCLRYGRRLA-QALQLPLAWVNEHSSTWAAGERHGLKGDRSGR 118
>gi|307103880|gb|EFN52137.1| hypothetical protein CHLNCDRAFT_139266 [Chlorella variabilis]
Length = 227
Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFII 73
+ +D G + +GLA+S P L + Q A +L+ E A ++
Sbjct: 28 RRALGLDYGRRVVGLAVS-TLGLAPRPLEGLPGPLAHEQLQLAAAVLAVAQREACDAIVL 86
Query: 74 GLPLNMNG------SEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVSAQQILIDM 125
GLP+ + G ++ + R F NM +P DER +T++A+++L
Sbjct: 87 GLPVTLAGSLRRRSTDSQQGRRCRNFADNMAAVAAPHAIPVFLADERGSTLAARRLLASS 146
Query: 126 NVSRKKRIQKVDSIAAALILQEVL 149
R +++DS+AAA+IL+
Sbjct: 147 GSRRSTLSKRMDSVAAAVILESFF 170
>gi|91787040|ref|YP_547992.1| Holliday junction resolvase-like protein [Polaromonas sp. JS666]
gi|118597219|sp|Q12EE8|RUVX_POLSJ RecName: Full=Putative Holliday junction resolvase
gi|91696265|gb|ABE43094.1| Holliday junction resolvase YqgF [Polaromonas sp. JS666]
Length = 138
Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 15/149 (10%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MS+ + L L Q + D G +R G+A + R A P+ + +
Sbjct: 1 MSLAAVPHLTAGL---QTFLAFDFGLQRTGVATGNVLTRTATPQATIAAT-GDARLKAIE 56
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I A ++G+P + +G+ + F + R + DER +T A
Sbjct: 57 LRIREWQPDALVVGIPFHPDGASHENTRRAQKFSRQLRAR-FGLKVFEVDERYSTTEALA 115
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVL 149
+ +IL++ L
Sbjct: 116 GGAADADAASA----------CIILEQFL 134
>gi|315638454|ref|ZP_07893631.1| Holliday junction resolvase family protein [Campylobacter
upsaliensis JV21]
gi|315481445|gb|EFU72072.1| Holliday junction resolvase family protein [Campylobacter
upsaliensis JV21]
Length = 127
Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++DLG KRIGLA+ A P ++RK Q A E+ I I+ I+GLP
Sbjct: 5 LALDLGLKRIGLALYVEN--IAMPLNAILRKNRNQAANEVRKLIEEHQISKLIVGLPKG- 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
SE + F+ + + +F DE T+ AQ + + + +K+ K+DS+
Sbjct: 62 GASEVEMTKRVQHFISLL---EFDGEVIFVDEAYTSKEAQGLGVA---NSRKKDGKLDSL 115
Query: 140 AAALILQEVL 149
AA ++L+
Sbjct: 116 AALIMLRGYF 125
>gi|307721583|ref|YP_003892723.1| Holliday junction resolvase YqgF [Sulfurimonas autotrophica DSM
16294]
gi|306979676|gb|ADN09711.1| Holliday junction resolvase YqgF [Sulfurimonas autotrophica DSM
16294]
Length = 132
Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+IDLG KRIGLA S + P P ++RK Q + E+ I A +IG+PL
Sbjct: 4 IAIDLGLKRIGLAYS-AHKDIVTPLPAVIRKNRNQASSEVKKIIQEWEADAVVIGVPLGG 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ SE F+ N++D ++ DE +++ A+ ++ + R +VDS+
Sbjct: 63 S-SEDEMRRRIEHFM-NLVD--FEGKVLYQDEAGSSLEAENMMK--GKIKYIRDGRVDSL 116
Query: 140 AAALILQEVL 149
+A +ILQ L
Sbjct: 117 SAMVILQRFL 126
>gi|317970100|ref|ZP_07971490.1| putative Holliday junction resolvase [Synechococcus sp. CB0205]
Length = 167
Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ + + S+D+G KRIGLA DP P P L R + +L + + I A
Sbjct: 2 AAPAPRSVLSLDVGRKRIGLAGCDPLGLTVKPLPALHRGRYPADLQQLQALVRERRILAL 61
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
++GLPL+ + R + + R + +P F +E ++ A +
Sbjct: 62 VVGLPLDAQQQPTAQAEHCRRYGERLA-RDLDLPLAFVNEYASSWDAGER 110
>gi|57242343|ref|ZP_00370282.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis
RM3195]
gi|57017023|gb|EAL53805.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis
RM3195]
Length = 127
Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++DLG KRIGLA+ A P ++RK Q A E+ I I+ I+GLP
Sbjct: 5 LALDLGLKRIGLALYVEN--IAVPLNAILRKNRNQAASEVQKLIKEHQISKLIVGLPKG- 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
SE + F+ + + +F DE T+ AQ + + + +K+ K+DS+
Sbjct: 62 GASEVEMTKRVQHFISLL---EFDGEVIFVDEAYTSKEAQDLGVA---NSRKKDGKLDSL 115
Query: 140 AAALILQEVL 149
AA ++L+
Sbjct: 116 AALIMLRGYF 125
>gi|154149272|ref|YP_001405978.1| Holliday junction resolvase-like protein [Campylobacter hominis
ATCC BAA-381]
gi|153805281|gb|ABS52288.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
Length = 127
Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KRIG+A+ + P+ ++RK Q A E+ + + ++G+PL +
Sbjct: 6 GLDVGLKRIGVAL--AFDKIVMPQNAVIRKNRNQAAREISEILQQNGVKKLVVGIPLGGS 63
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
SE F + +F DE ++V A ++ S KK+ K+DS+A
Sbjct: 64 -SEDEMKRRITHFCSLL---NFKGEIIFMDESYSSVEADEM---RQFSGKKKDGKLDSLA 116
Query: 141 AALILQEVL 149
A +IL+ L
Sbjct: 117 AMVILKRYL 125
>gi|194246642|ref|YP_002004281.1| Putative Holliday junction resolvase [Candidatus Phytoplasma mali]
gi|193806999|emb|CAP18434.1| Putative Holliday junction resolvase [Candidatus Phytoplasma mali]
Length = 145
Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIGL 75
P +DLG K +G++IS F+ L + L I +NI I+GL
Sbjct: 6 PYLGLDLGEKTLGISIS-EAGFFSVNFKTLNFPNHQYNYLLKPLKILIIQKNIKTIILGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +MN G + + F + D K+ V + WDERL+T + L + N ++KK Q
Sbjct: 65 PKHMNNDLGVKSLISINFKKRLEDYLKLDVKIILWDERLSTKQSLIFLKNNNKNKKKIKQ 124
Query: 135 KVDSIAAALILQEVLDRISFL 155
D +AA ILQ LD S +
Sbjct: 125 LKDEVAAMFILQNFLDYQSNI 145
>gi|121608487|ref|YP_996294.1| Holliday junction resolvase-like protein [Verminephrobacter
eiseniae EF01-2]
gi|121553127|gb|ABM57276.1| Holliday junction resolvase YqgF [Verminephrobacter eiseniae
EF01-2]
Length = 161
Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 14/143 (9%)
Query: 9 LVKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
L +L P + + D G KR+G+A + A P+ + ++ I
Sbjct: 27 LAPALVPAHVRTFLAFDFGLKRVGVASGNRLLLRAAPQSTIAAVGA-ARWAQVAQRIGQW 85
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
A +IG+PL+ +G+ F + R +P DER +T A
Sbjct: 86 QPDALVIGVPLHPDGASHENTALALRFGRQLRGR-FGLPVFEVDERYSTTEAIAGGAKDA 144
Query: 127 VSRKKRIQKVDSIAAALILQEVL 149
+ +IL++ L
Sbjct: 145 DAAAA----------CIILEQFL 157
>gi|219112769|ref|XP_002178136.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411021|gb|EEC50950.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 190
Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 14/137 (10%)
Query: 20 ASIDLGTKRIGLAIS---DPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+D G R G+A++ DP P L T+ ++ + E + ++GLP
Sbjct: 21 IGVDYGLVRTGVAVTVGYDP-----KPLTILKDLNATEVCDAVIRCVRLEQASRIVVGLP 75
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
L+ NG+ + + T FV + + V +DER T+ +A N +
Sbjct: 76 LHKNGTIAEQTNLTLVFVAELAQKSLQELGPGVKVELFDERYTSKAAAARAHSRNPHQPL 135
Query: 132 RIQKVDSIAAALILQEV 148
+D+ AA +IL+
Sbjct: 136 -YGTLDADAACIILENY 151
>gi|33862799|ref|NP_894359.1| hypothetical protein PMT0526 [Prochlorococcus marinus str. MIT
9313]
gi|62901010|sp|Q7V847|RUVX_PROMM RecName: Full=Putative Holliday junction resolvase
gi|33634715|emb|CAE20701.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 161
Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + + + S+DLG +RIGLA DP P P L RK + L T+ +
Sbjct: 1 MTATKPSPKSMLSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFERDLKVLQWHCTSRKV 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLPL+ G + + + R + +P +E ++ +A +
Sbjct: 61 EGLVVGLPLDAKGLPTDQARHYERYGQRLA-RALKLPLALVNEHSSSWAAAERYNLQG-- 117
Query: 129 RKKRIQKVDS 138
R ++DS
Sbjct: 118 --DRSGQLDS 125
>gi|254751374|ref|ZP_05203411.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Vollum]
Length = 75
Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+AISD A + ++ + + ++ ++GL
Sbjct: 2 RILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGL 61
Query: 76 PLNMNGSEGPRVHS 89
P NMNG+ GPR +
Sbjct: 62 PKNMNGTIGPRGEA 75
>gi|154174481|ref|YP_001408003.1| Holliday junction resolvase-like protein [Campylobacter curvus
525.92]
gi|112803348|gb|EAU00692.1| conserved hypothetical protein [Campylobacter curvus 525.92]
Length = 127
Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 11/134 (8%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ +ID+G KR+G+A P+ ++RK Q A E+ + + ++G+
Sbjct: 2 SEKFMAIDVGLKRVGVAFG--TGGIVVPQEPILRKNRNQAAREVSARVQEYGADTLVVGV 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + SE FV + ++ V+ DE ++ A +I D KR +
Sbjct: 60 PKGGS-SEDEMRRRIEHFVSLL---EISAKIVYQDEAFSSFEASEIYTDT-----KRDGR 110
Query: 136 VDSIAAALILQEVL 149
+DS+AA LIL+ L
Sbjct: 111 LDSVAAMLILKRYL 124
>gi|318041634|ref|ZP_07973590.1| putative Holliday junction resolvase [Synechococcus sp. CB0101]
Length = 151
Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIGLA D P P L R + L S + I A ++GLPL+
Sbjct: 2 LALDVGRKRIGLAGCDALGLTVTPLPALRRGRYPADLEHLRSLVAQRRITALVVGLPLDA 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSR 129
+ R + + R + +P +E ++ +A++ + + S
Sbjct: 62 QQQPTEQAEHCRRYGERLA-RHLALPLALVNEFASSWAAAERHGLHGDRSG 111
>gi|284007792|emb|CBA73648.1| holliday junction resolvase [Arsenophonus nasoniae]
Length = 74
Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E P + R F + + R + DERLTT+ A+ L + R K+DS
Sbjct: 1 MDGTEQPISNQARKFANRLHGR-FGIKVTLHDERLTTIEARAQLFNQGGYRALNKSKIDS 59
Query: 139 IAAALILQEVLDR 151
I+A +IL+ ++
Sbjct: 60 ISAVIILESWFEQ 72
>gi|218513131|ref|ZP_03509971.1| holliday junction resolvase protein [Rhizobium etli 8C-3]
Length = 78
Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/78 (53%), Positives = 54/78 (69%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLN 78
F E +A F+IGLP+N
Sbjct: 61 DFAAKERVAGFVIGLPMN 78
>gi|308369751|ref|ZP_07666800.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis
SUMu002]
gi|308372334|ref|ZP_07428278.2| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis
SUMu004]
gi|308374613|ref|ZP_07667825.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis
SUMu006]
gi|308375552|ref|ZP_07444315.2| hypothetical protein TMGG_02319 [Mycobacterium tuberculosis
SUMu007]
gi|308377049|ref|ZP_07668417.1| hypothetical protein TMHG_01748 [Mycobacterium tuberculosis
SUMu008]
gi|308378414|ref|ZP_07668743.1| hypothetical protein TMIG_03343 [Mycobacterium tuberculosis
SUMu009]
gi|308379237|ref|ZP_07485604.2| hypothetical protein TMJG_01534 [Mycobacterium tuberculosis
SUMu010]
gi|308380399|ref|ZP_07669183.1| hypothetical protein TMKG_02983 [Mycobacterium tuberculosis
SUMu011]
gi|308326527|gb|EFP15378.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis
SUMu002]
gi|308333565|gb|EFP22416.1| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis
SUMu004]
gi|308341258|gb|EFP30109.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis
SUMu006]
gi|308345968|gb|EFP34819.1| hypothetical protein TMGG_02319 [Mycobacterium tuberculosis
SUMu007]
gi|308349065|gb|EFP37916.1| hypothetical protein TMHG_01748 [Mycobacterium tuberculosis
SUMu008]
gi|308352657|gb|EFP41508.1| hypothetical protein TMIG_03343 [Mycobacterium tuberculosis
SUMu009]
gi|308357633|gb|EFP46484.1| hypothetical protein TMJG_01534 [Mycobacterium tuberculosis
SUMu010]
gi|308361575|gb|EFP50426.1| hypothetical protein TMKG_02983 [Mycobacterium tuberculosis
SUMu011]
Length = 122
Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 40/107 (37%)
Query: 45 PFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
+ R + + L + I+GLP + G + R
Sbjct: 2 ETVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPT 61
Query: 105 PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
P DERLTTVSAQ+ L V ++ +D AA ILQ LD
Sbjct: 62 PVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDE 108
>gi|301633655|gb|ADK87209.1| RNAse H domain protein, YqgF family [Mycoplasma pneumoniae FH]
Length = 140
Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 6/139 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITT--ENIAAFI 72
Q I ID G KRIG A+++ RF P + Q L + + +
Sbjct: 1 MQYILGIDFGLKRIGTALANTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IG P + + +V S FV +I + VP DE TT + L ++ + +
Sbjct: 61 IGFP-HFHYQSSIQV-SIHKFVE-LIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTF 117
Query: 133 IQKVDSIAAALILQEVLDR 151
+ D++AA LIL+ L++
Sbjct: 118 KKAKDTLAATLILERFLNQ 136
>gi|148239493|ref|YP_001224880.1| putative Holliday junction resolvase [Synechococcus sp. WH 7803]
gi|147848032|emb|CAK23583.1| Putative Holliday junction resolvase [Synechococcus sp. WH 7803]
Length = 159
Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+G +RIGLA DP P L R Q L + N+ ++GLPL+
Sbjct: 2 LSLDVGRRRIGLAGCDPLGLTVSSLPALHRGSHAQNLQHLRNLCHQRNVQGLVVGLPLDD 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSRK 130
G + H + + R + +P F +E ++ +A++ + + S +
Sbjct: 62 QGQRTDQAHHCHRYGQRIA-RDLGLPLAFVNEHSSSWAAAERHGLQGDRSGR 112
>gi|237752177|ref|ZP_04582657.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376419|gb|EEO26510.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 146
Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL- 77
I +ID+G KRIG+A S R ++RK Q A + + + ++G+P
Sbjct: 6 IIAIDIGLKRIGVAKS--IRGIPLCLEPILRKNRNQAANAVRTLVLELQANVLVVGIPFV 63
Query: 78 ----NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK-- 131
N S + FV +++ + + VF+DE ++ A + L D + +K
Sbjct: 64 DDVSKANDSICAMQRRIKHFVG-LLELESKIEIVFFDESFSSKEALEKLDDKKMRKKAHS 122
Query: 132 RIQKVDSIAAALILQEVL 149
+ +DS+AA +IL+ L
Sbjct: 123 KDGSLDSLAALVILERYL 140
>gi|242035117|ref|XP_002464953.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor]
gi|241918807|gb|EER91951.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor]
Length = 214
Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R GLA+ G P L + + L LL + IIGLP++
Sbjct: 75 LGVDLGDARTGLAVG-RGITLPRPLTVLKLR-GQKLELTLLDVARQQEADELIIGLPVSA 132
Query: 80 NGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E P+ + R+ V + + + DE T+ A + +I V + R + D
Sbjct: 133 DGRETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALEYMISRGVKKSARDTQSD 192
Query: 138 SIAAAL 143
+ AA +
Sbjct: 193 AYAAVV 198
>gi|116070989|ref|ZP_01468258.1| Holliday junction resolvase YqgF [Synechococcus sp. BL107]
gi|116066394|gb|EAU72151.1| Holliday junction resolvase YqgF [Synechococcus sp. BL107]
Length = 151
Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+G KRIGLA D P P L R + L L ++ ++GLPL+
Sbjct: 2 LSLDVGRKRIGLAGCDALGITVTPLPALHRGRFDNDLLVLRDHCQRRSVQGLVVGLPLDS 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
G + + + + + + +P + +E +T +A ++ + + + +
Sbjct: 62 AGQPTVQAVHCQRYGLRLA-QTLGLPLAWVNEHSSTWAAGERHGLQGDRTGR 112
>gi|223039680|ref|ZP_03609966.1| conserved hypothetical protein [Campylobacter rectus RM3267]
gi|222879063|gb|EEF14158.1| conserved hypothetical protein [Campylobacter rectus RM3267]
Length = 124
Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +ID+G KRIG+A+ R+ P+ ++RK Q A ++ + + ++G+PL
Sbjct: 2 SIMAIDVGLKRIGVAL--AVRQTVMPQTPVLRKNRNQAARDVSAVLREYGAKKLVVGVPL 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
SE FV + + V+ DE +++ A +I + +R ++D
Sbjct: 60 G-GPSEDEMRRRIEHFVSLL---EFDGEVVYQDEAMSSFEASEIYAES-----RRDGRLD 110
Query: 138 SIAAALILQEVL 149
SIAA +IL+ L
Sbjct: 111 SIAAMIILKRYL 122
>gi|283956049|ref|ZP_06373536.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792369|gb|EFC31151.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
jejuni 1336]
Length = 127
Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 4 LALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ SE + FV + + F DE T+ A L + +K+ K+DS+
Sbjct: 63 S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115
Query: 140 AAALILQEVL 149
AA +++++
Sbjct: 116 AAFIMIKDYF 125
>gi|86151561|ref|ZP_01069775.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315124150|ref|YP_004066154.1| hypothetical protein ICDCCJ07001_581 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|85841190|gb|EAQ58438.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315017872|gb|ADT65965.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 127
Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 4 LALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ SE + FV + + F DE T+ A + I +K+ K+DS+
Sbjct: 63 S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEALEYGIA---DTRKKDGKLDSL 115
Query: 140 AAALILQEVL 149
AA +++++
Sbjct: 116 AAFIMIKDYF 125
>gi|32266728|ref|NP_860760.1| Holliday junction resolvase-like protein [Helicobacter hepaticus
ATCC 51449]
gi|62901012|sp|Q7VGU1|RUVX_HELHP RecName: Full=Putative Holliday junction resolvase
gi|32262779|gb|AAP77826.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 138
Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N I + D+G KRIGLA + P P ++R Q A EL + + NI ++G+
Sbjct: 2 NHCILACDVGLKRIGLAT--LKQEIILPLPPIIRINRNQAAKELDNVLKERNIHILVVGM 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKKR 132
P +G E + + H + F +E T+ +A Q L N +R ++
Sbjct: 60 P---SGGEAEHSDTQKRISHFISLLSFEGEICFVNEDYTSFNALQSLSYMKRQNRARAQK 116
Query: 133 IQKVDSIAAALILQEVL 149
++DS++A ILQ +
Sbjct: 117 DGRIDSLSACEILQRYI 133
>gi|332295476|ref|YP_004437399.1| Holliday junction resolvase [Thermodesulfobium narugense DSM 14796]
gi|332178579|gb|AEE14268.1| Holliday junction resolvase [Thermodesulfobium narugense DSM 14796]
Length = 140
Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 6/143 (4%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
ID G +GL+ISDP + P + R + ++ I +++ A ++G PL
Sbjct: 2 RYLGIDWGVTHLGLSISDPEEKIVFPLGTITRTTWDKDLNKIKQIIEEKSVEAIVLGDPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ S + + V + +DER +++ A L + K K+
Sbjct: 62 RTD-FSSASSKSILKVKKKL--ETIGVKVILFDERYSSIEA---LKLQKILGNKDKGKIH 115
Query: 138 SIAAALILQEVLDRISFLESSKG 160
IA++++L+ LD +S + + G
Sbjct: 116 EIASSIVLKSFLDFLSNTKKNIG 138
>gi|86153306|ref|ZP_01071510.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|85843032|gb|EAQ60243.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni HB93-13]
Length = 127
Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 4 LALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ SE + FV + + F DE T+ A L + +K+ K+DS+
Sbjct: 63 S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115
Query: 140 AAALILQEVL 149
+A +++++
Sbjct: 116 SAFIMIKDYF 125
>gi|297844086|ref|XP_002889924.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335766|gb|EFH66183.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 238
Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R G+AIS P L + + LL E + FIIGLP +
Sbjct: 68 LGVDLGLSRTGVAIS--KGYTVKPLTVLK-SRGQKLETRLLEIAEEEEVDEFIIGLPRSS 124
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E + + R+ + + +DE TT A +I M +S+ +R + D
Sbjct: 125 DGKETIQSNKIRSVAGRLAVQAAERGWRVYVFDEHGTTSEASDRMIVMGLSKSERQNRSD 184
Query: 138 SIAAALILQEVL 149
+ AA ++L+
Sbjct: 185 AYAAVILLERYF 196
>gi|153951394|ref|YP_001398406.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. doylei 269.97]
gi|167012708|sp|A7H4H6|RUVX_CAMJD RecName: Full=Putative Holliday junction resolvase
gi|152938840|gb|ABS43581.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. doylei 269.97]
Length = 129
Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 4 LALDIGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ SE + FV + + F DE T+ A + I + +K+ K+DS+
Sbjct: 63 S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKKALEYGIA---NTRKKDGKLDSL 115
Query: 140 AAALILQEVL 149
AA +++++
Sbjct: 116 AAFIMIKDYF 125
>gi|57236948|ref|YP_178749.1| Holliday junction resolvase-like protein [Campylobacter jejuni
RM1221]
gi|86149908|ref|ZP_01068137.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|148926622|ref|ZP_01810303.1| hypothetical protein Cj8486_0644 [Campylobacter jejuni subsp.
jejuni CG8486]
gi|157414914|ref|YP_001482170.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni 81116]
gi|205355485|ref|ZP_03222256.1| hypothetical protein Cj8421_0637 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|218562285|ref|YP_002344064.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|11135891|sp|Q9PHN2|RUVX_CAMJE RecName: Full=Putative Holliday junction resolvase
gi|62900905|sp|Q5HVD6|RUVX_CAMJR RecName: Full=Putative Holliday junction resolvase
gi|172047089|sp|A8FL56|RUVX_CAMJ8 RecName: Full=Putative Holliday junction resolvase
gi|57165752|gb|AAW34531.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
RM1221]
gi|85839726|gb|EAQ56986.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|112359991|emb|CAL34780.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|145845141|gb|EDK22236.1| hypothetical protein Cj8486_0644 [Campylobacter jejuni subsp.
jejuni CG8486]
gi|157385878|gb|ABV52193.1| putative Holliday junction resolvase [Campylobacter jejuni subsp.
jejuni 81116]
gi|205346719|gb|EDZ33351.1| hypothetical protein Cj8421_0637 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|307747552|gb|ADN90822.1| Putative Holliday junction resolvase [Campylobacter jejuni subsp.
jejuni M1]
gi|315058049|gb|ADT72378.1| Putative Holliday junction resolvase [Campylobacter jejuni subsp.
jejuni S3]
gi|315926753|gb|EFV06127.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315931833|gb|EFV10788.1| hypothetical protein CSU_0978 [Campylobacter jejuni subsp. jejuni
327]
Length = 127
Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 4 LALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ SE + FV + + F DE T+ A L + +K+ K+DS+
Sbjct: 63 S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115
Query: 140 AAALILQEVL 149
+A +++++
Sbjct: 116 SAFIMIKDYF 125
>gi|224417735|ref|ZP_03655741.1| Holliday junction resolvase-like protein [Helicobacter canadensis
MIT 98-5491]
gi|253827079|ref|ZP_04869964.1| putative endonuclease [Helicobacter canadensis MIT 98-5491]
gi|313141277|ref|ZP_07803470.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|253510485|gb|EES89144.1| putative endonuclease [Helicobacter canadensis MIT 98-5491]
gi|313130308|gb|EFR47925.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 133
Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
Q I ++D+G KRIG+A S P P ++RK Q A E+ I I I+G+
Sbjct: 1 MQSILALDIGLKRIGIAKS--IHNIPIPLPPILRKNRNQAAKEVSQVICDSKIQTLIVGI 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + + + FV +++ + F DE ++ A Q + + KK+
Sbjct: 59 PKE-SETAAEMERRIKHFVA-LLEIPDNIKIHFVDESFSSFEALQRM-QGSKKSKKKDGT 115
Query: 136 VDSIAAALILQEVL 149
+DS+AA +IL+ L
Sbjct: 116 LDSLAAMIILERFL 129
>gi|56807333|ref|ZP_00365334.1| COG0816: Predicted endonuclease involved in recombination
(possible Holliday junction resolvase in Mycoplasmas
and B. subtilis) [Streptococcus pyogenes M49 591]
Length = 83
Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + +K L + + F+IGLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 60
Query: 78 NMNGSEGPRVHSTRAFV 94
NMN + GPRV ++ +
Sbjct: 61 NMNNTNGPRVDASITYG 77
>gi|13508157|ref|NP_110106.1| hypothetical protein MPN419 [Mycoplasma pneumoniae M129]
gi|11135617|sp|P57114|RUVX_MYCPN RecName: Full=Putative Holliday junction resolvase
gi|11379549|gb|AAG34748.1|AE000041_6 conserved hypothetical protein [Mycoplasma pneumoniae M129]
Length = 140
Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 6/139 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITT--ENIAAFI 72
Q I ID G KRIG A+ + RF P + Q L + + +
Sbjct: 1 MQYILGIDFGLKRIGTALVNTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IG P + + +V S FV +I + VP DE TT + L ++ + +
Sbjct: 61 IGFP-HFHYQSSIQV-SIHKFVE-LIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTF 117
Query: 133 IQKVDSIAAALILQEVLDR 151
+ D++AA LIL+ L++
Sbjct: 118 KKAKDTLAATLILERFLNQ 136
>gi|283954083|ref|ZP_06371608.1| hypothetical protein C414_000080073 [Campylobacter jejuni subsp.
jejuni 414]
gi|283794362|gb|EFC33106.1| hypothetical protein C414_000080073 [Campylobacter jejuni subsp.
jejuni 414]
Length = 127
Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 4 LALDVGLKRIGVALC-VDKKIALPLNAVLRKNRNQAASEIKNLLKIHEISLLIVGIPKGG 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ SE + FV + + F DE T+ A L + +++ K+DS+
Sbjct: 63 S-SEEEMTRRIKHFVSLL---EFDKEICFIDESGTSKEA---LKYGVANAREKDGKLDSL 115
Query: 140 AAALILQEVL 149
AA +++++
Sbjct: 116 AAFIMIKDYF 125
>gi|167012774|sp|Q4A632|RUVX_MYCS5 RecName: Full=Putative Holliday junction resolvase
gi|144575088|gb|AAZ43789.2| conserved hypothetical protein [Mycoplasma synoviae 53]
Length = 137
Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF-ITTENIAAFIIGLPLN 78
ID G RIG AISD F+ + ++ + + I FIIG PLN
Sbjct: 4 LGIDFGLSRIGFAISDESNSFSLALENFDYDGSYEKIIQKIQLFLDEYKIDKFIIGYPLN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G + F+ ++ ++ +E ++ A +IL N+ KK+ K D
Sbjct: 64 SRGEKTKTCLLIDEFIIHL-EKNFDQKIKLINESYSSRKASEILHQANIKNKKQKDKKDM 122
Query: 139 IAAALILQEVLD 150
+AA +ILQ+ LD
Sbjct: 123 LAAKIILQDYLD 134
>gi|255573708|ref|XP_002527775.1| hydrolase, acting on ester bonds, putative [Ricinus communis]
gi|223532810|gb|EEF34585.1| hydrolase, acting on ester bonds, putative [Ricinus communis]
Length = 239
Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
IDLG R GLAIS P L + + LL E FIIGLP +
Sbjct: 77 LGIDLGLSRTGLAIS--KGFSFKPLTVLELR-GQKLETRLLEIAEDEEADEFIIGLPKSW 133
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E + + R+ + R DE T+ A +I++ +S+ R + +D
Sbjct: 134 DGKETSQCNKVRSVAGRIAVRAAERGWRVYLQDEHGTSTDATYWMINVGLSKGARQKSID 193
Query: 138 SIAAALILQEV 148
+ AA ++L+
Sbjct: 194 AYAAVMVLERY 204
>gi|57167661|ref|ZP_00366801.1| conserved hypothetical protein TIGR00250 [Campylobacter coli
RM2228]
gi|305433168|ref|ZP_07402324.1| Holliday junction resolvase family protein [Campylobacter coli
JV20]
gi|57020783|gb|EAL57447.1| conserved hypothetical protein TIGR00250 [Campylobacter coli
RM2228]
gi|304443869|gb|EFM36526.1| Holliday junction resolvase family protein [Campylobacter coli
JV20]
Length = 126
Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIG+A+ + A P ++RK Q A E+ + + +I+ I+G+P
Sbjct: 4 LALDVGLKRIGVALC--IDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGG 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ SE + FV + + F DE T+ A L + +K+ K+DS+
Sbjct: 62 S-SEEEMTRRIKHFVSLL---EFDKEIRFVDESGTSKEA---LGYGVANTRKKDAKLDSL 114
Query: 140 AAALILQEVL 149
AA +++++
Sbjct: 115 AALIMIKDYF 124
>gi|121612111|ref|YP_001000336.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni 81-176]
gi|167005282|ref|ZP_02271040.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni 81-176]
gi|167012709|sp|A1VYZ5|RUVX_CAMJJ RecName: Full=Putative Holliday junction resolvase
gi|87250480|gb|EAQ73438.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 81-176]
Length = 127
Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 4 LALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGG 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ E + FV + + F DE T+ A L + +K+ K+DS+
Sbjct: 63 SREE-EMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115
Query: 140 AAALILQEVL 149
+A +++++
Sbjct: 116 SAFIMIKDYF 125
>gi|213620668|ref|ZP_03373451.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 71
Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG+AI A P P + + T + + I+GLPL
Sbjct: 4 TLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPL 63
Query: 78 NMNGSEGP 85
NM+G+E P
Sbjct: 64 NMDGTEQP 71
>gi|297626344|ref|YP_003688107.1| Holliday junction resolvase [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922109|emb|CBL56677.1| Holliday junction resolvase [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 181
Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 3/141 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G RIG+A D A+P + + T L + + I+G+P ++
Sbjct: 25 LCLDWGKARIGVAACDRDGLLAYPVETVA--NGSGTMKRLKALVDEYEPFEIIMGMPTDL 82
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G +G + + R ++ DERLTT +A + L + R +D
Sbjct: 83 RGRQGIAASAMIDNARR-VTRALHRDVRLVDERLTTAAATRRLAAAGRDSRHRRSVIDQA 141
Query: 140 AAALILQEVLDRISFLESSKG 160
AA IL++ ++ + G
Sbjct: 142 AAVAILEQAIEMEKRSGHAPG 162
>gi|147819080|emb|CAN65349.1| hypothetical protein VITISV_000639 [Vitis vinifera]
Length = 213
Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 25/132 (18%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R GLA+S P + FIIGLP++
Sbjct: 67 LGVDLGMSRTGLALS--KGFSVRPLS---------------------EVDEFIIGLPVSD 103
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E P+ + R+ + R DE T+ A +IDM S+ R +D
Sbjct: 104 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSFMIDMGHSKSARQNSID 163
Query: 138 SIAAALILQEVL 149
+ AA ++L+
Sbjct: 164 AYAAMMVLERYF 175
>gi|158604996|gb|ABW74808.1| conserved hypothetical protein [Campylobacter concisus 13826]
Length = 127
Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID+G KRIGLA P ++RK Q A ++ + ++G+
Sbjct: 2 REKFMAIDVGLKRIGLAFG--FGEVVTPLEPVLRKNRNQAARDVSQKVNEYAPNTLVVGV 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ + SE FV + + V+ DE ++ A +I D +R +
Sbjct: 60 PIGGS-SEDEMRRRIEHFVSLL---DMQANIVYQDEAFSSSEASEIYTDT-----RRDGR 110
Query: 136 VDSIAAALILQEVL 149
+DS++AA+IL+ L
Sbjct: 111 LDSVSAAIILKRYL 124
>gi|302768497|ref|XP_002967668.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii]
gi|300164406|gb|EFJ31015.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii]
Length = 186
Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 3 ILLIEDLVKSLKPN--QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
IL L KSL+ + ID G +R G+A++ P + + K +LL
Sbjct: 8 ILPNARLKKSLETRKLRRSVGIDYGLERTGIAVT-FCGLAPRPLS-VSKLKGDNLIKKLL 65
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSA 118
S E FI+GLP + + E + + TR F + + V DE +T+ A
Sbjct: 66 SVAKKEKADEFIVGLPRSWDAQETEQSNKTRTFAGRLAQYSAEEGVRVFLHDEYMTSEDA 125
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALI 144
+ +I ++K R +VD+ AA L+
Sbjct: 126 LEFMIYRGSTKKSRRLEVDAYAAVLM 151
>gi|257460557|ref|ZP_05625658.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
gi|257441888|gb|EEV17030.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
Length = 130
Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 6/134 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +IDLG KRIG+A + P + P ++RK TQ A EL + + + ++G+P
Sbjct: 2 IVAIDLGLKRIGVAAA-PDDKTPLPCEPILRKNRTQAARELSELLREKGASVLVLGVPRG 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
SE R F + F DE ++ A + + + DS
Sbjct: 61 -GASEEEMSRRIRHFASLL---DFDGEIKFQDESFSSAEAAEFASKC-AKGGGKDPRFDS 115
Query: 139 IAAALILQEVLDRI 152
IAA +ILQ L +
Sbjct: 116 IAATIILQRFLASM 129
>gi|302871987|ref|YP_003840623.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis
OB47]
gi|302574846|gb|ADL42637.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis
OB47]
Length = 172
Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP- 76
I +D+G R+G+AISDP + A P + K EL T NI +IG P
Sbjct: 2 RILCLDIGNSRVGVAISDPLKITAQPLMTIELKN-KDLFDELDKIFHTYNIEKVVIGYPL 60
Query: 77 --LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L+ + + ++ + + I + V V WDER +T + ++++ + +K+R Q
Sbjct: 61 SKLHPDLKD-EKLKKIDE-ISSRIGSRYNVEIVKWDERFSTKAVERVMNEELNWKKRRRQ 118
>gi|293977821|ref|YP_003543251.1| hypothetical protein DMIN_00920 [Candidatus Sulcia muelleri DMIN]
gi|292667752|gb|ADE35387.1| conserved hypothetical protein [Candidatus Sulcia muelleri DMIN]
Length = 138
Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ID G KRIGL+I++ R A + + L ++ E+I +IGL
Sbjct: 1 MSKILCIDYGKKRIGLSITNSIRSIAFGLDTVNSNNI---ICTLYKYLKYEDIDTIVIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKR 132
P+ + S P + F+ + ++ + DER T+ A LI+ + KK
Sbjct: 58 PIRFDNSLFPIEKDIKKFIKIINNKYPKLIIKRIDERFTSKIANYYLINTRLKINQLKKN 117
Query: 133 IQKV--DSIAAALILQEVL 149
+ D I+A ++LQE +
Sbjct: 118 KNFLDKDKISATILLQEYI 136
>gi|87304077|ref|ZP_01086656.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 5701]
gi|87281492|gb|EAQ73539.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 5701]
Length = 148
Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
D+G KRIGLA D P P L R + L L ++ ++GLPL+ G
Sbjct: 2 DVGRKRIGLAGCDALGITVTPLPALHRGRFDNDLLVLRDHCQRRSVQGLVVGLPLDSAGQ 61
Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
+ + + + + + +P + +E +T +A ++ + + + +
Sbjct: 62 PTVQAVHCQRYGLRLA-QTLGLPLAWVNEHSSTWAAGERHGLQGDRTGR 109
>gi|161833711|ref|YP_001597907.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri GWSS]
gi|189046110|sp|A8Z5W0|RUVX_SULMW RecName: Full=Putative Holliday junction resolvase
gi|152206201|gb|ABS30511.1| conserved hypothetical Holliday junction resolvase-like protein
[Candidatus Sulcia muelleri GWSS]
Length = 138
Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ID G KRIGL+I++ R A + + L ++ E+I +IGL
Sbjct: 1 MSKILCIDYGKKRIGLSITNSIRSIAFGLDTVNSNNI---ICTLYKYLKYEDIDTIVIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ + S P + F+ + ++ + DER T+ A LI+ + + +
Sbjct: 58 PIRFDNSLFPIEKDIKKFIKIINNKYPKLIIKRIDERFTSKIANYYLINTRLKINQLKKN 117
Query: 136 -----VDSIAAALILQEVL 149
D I+A ++LQE +
Sbjct: 118 QNFLDKDKISATILLQEYI 136
>gi|88597054|ref|ZP_01100290.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 84-25]
gi|88190743|gb|EAQ94716.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 84-25]
gi|284925895|gb|ADC28247.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni IA3902]
Length = 127
Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 4 LALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGG 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ SE + FV + + F DE T+ A L + +K+ K+DS+
Sbjct: 63 S-SEEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSL 115
Query: 140 AAALILQEVL 149
+A +++++
Sbjct: 116 SAFIMIKDYF 125
>gi|319787649|ref|YP_004147124.1| Holliday junction resolvase YqgF [Pseudoxanthomonas suwonensis
11-1]
gi|317466161|gb|ADV27893.1| Holliday junction resolvase YqgF [Pseudoxanthomonas suwonensis
11-1]
Length = 156
Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 5/139 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
P + D+G++RIG+A+ + L + I+
Sbjct: 11 SPEAIVLGFDVGSRRIGVAVGSAFGGA-RAVAVVNVHAAGPDWAALDRLRSQWGPGGLIV 69
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS---AQQILIDMNVSRK 130
G PL ++G + P RA + + + +P DER ++V R+
Sbjct: 70 GDPLTLDGEDQPARRRARA-FAHALRERYGLPVGMVDERSSSVEAAQRFARARASGTRRR 128
Query: 131 KRIQKVDSIAAALILQEVL 149
+ + +D+ AAA+I++ L
Sbjct: 129 RDAENLDAEAAAVIIERWL 147
>gi|255321388|ref|ZP_05362548.1| conserved hypothetical protein [Campylobacter showae RM3277]
gi|255301541|gb|EET80798.1| conserved hypothetical protein [Campylobacter showae RM3277]
Length = 124
Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +ID+G KRIG+A+ + P+ ++RK Q A ++ + + ++G+PL
Sbjct: 2 SIMAIDVGLKRIGVAL--AVGQTVMPQTPVLRKNRNQAARDVSTVLREYGAKKLVVGVPL 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ SE FV + + V+ DE +++ A +I + +R ++D
Sbjct: 60 GGS-SEDEMRRRIAHFVSLL---EFDGEVVYQDEAMSSFEASEIYAEG-----RRDGRLD 110
Query: 138 SIAAALILQEVL 149
SIAA ++L+ L
Sbjct: 111 SIAAMIVLKRYL 122
>gi|12045147|ref|NP_072958.1| hypothetical protein MG_505 [Mycoplasma genitalium G37]
gi|6226357|sp|Q9ZB76|RUVX_MYCGE RecName: Full=Putative Holliday junction resolvase
gi|3844876|gb|AAC71518.1| conserved hypothetical protein [Mycoplasma genitalium G37]
gi|166078883|gb|ABY79501.1| conserved hypothetical protein [synthetic Mycoplasma genitalium
JCVI-1.0]
Length = 138
Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITT-ENIAAFIIGL 75
I +ID G K+IG AI++ ++ K +TA+ L + +IG
Sbjct: 4 ILAIDFGLKKIGTAIANTLDKYPSAFHVFEVKNNFKTAVNNLFLRIKNDGYELEKIVIGF 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P S+ + +++++ +P + DE TT + + LI M++ K +
Sbjct: 64 PKFHYYSD---IQKAIKSFKQLLEKRFNLPIILVDESNTTSAVKDKLITMDLKHKDFKKA 120
Query: 136 VDSIAAALILQEVL 149
D++AA LIL+
Sbjct: 121 KDTLAAVLILERFF 134
>gi|330872143|gb|EGH06292.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 84
Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRI 133
+PLNM+G+ F + + + V DERLTT A+ + + R
Sbjct: 1 MPLNMDGTPSDMSARAEKFSRKL-NGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRN 59
Query: 134 QKVDSIAAALILQEVLDRISFL 155
VD+IAAAL+LQ LD L
Sbjct: 60 NPVDAIAAALLLQGWLDEHPEL 81
>gi|159903511|ref|YP_001550855.1| endonuclease [Prochlorococcus marinus str. MIT 9211]
gi|226731638|sp|A9BAN9|RUVX_PROM4 RecName: Full=Putative Holliday junction resolvase
gi|159888687|gb|ABX08901.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. MIT 9211]
Length = 145
Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + S+D+G +RIG+A DP + R A +L ++ IIGL
Sbjct: 6 SKSVLSLDVGKRRIGIAGCDPLGITITQLEAIKRTTFNNEATQLRQLCDLRDVRGIIIGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL+ G E + + N+ + +P + +E +T A Q N R K
Sbjct: 66 PLSDLGKETKQSSYCYTYGINIAKE-LNLPLAWVNEHSSTWEAGQRFKLQN----DRSGK 120
Query: 136 VDS 138
+DS
Sbjct: 121 LDS 123
>gi|37926502|pdb|1IV0|A Chain A, Solution Structure Of The Yqgf-Family Protein (N-Terminal
Fragment)
Length = 98
Score = 90.0 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D+G RIGLA+ + G A R +LVRK + + LL F+ E + ++GLPL
Sbjct: 2 RVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPL 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116
+ E + V + R V WDER TT
Sbjct: 62 RTDLKESAQAGKVLPLVEALRAR--GVEVELWDERFTTK 98
>gi|237750752|ref|ZP_04581232.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter
bilis ATCC 43879]
gi|229373842|gb|EEO24233.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter
bilis ATCC 43879]
Length = 160
Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 29/160 (18%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA----AFIIG 74
I ID G KR+G+A + P ++RK Q + +L + + ++G
Sbjct: 3 IFGIDFGLKRLGVAK--VVQNIIVPLAPIMRKNRNQASKDLANLLLAHESDMSKITLVVG 60
Query: 75 LPLNMN--------------------GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLT 114
+P +M+ G + H + ++ DE +
Sbjct: 61 MPRDMDIDDVDTESNLNIESGLDIESNRAGRHEVMQKRISHFLNLIDFSGQVIYIDESYS 120
Query: 115 TVSAQQILIDMNVSRKK---RIQKVDSIAAALILQEVLDR 151
+ A + L+D +++K + +DSI+A +IL+ L+R
Sbjct: 121 SKEANERLLDRGYNKRKNARKNGVLDSISACVILERYLER 160
>gi|79317769|ref|NP_001031028.1| DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic
acid binding / recombinase [Arabidopsis thaliana]
gi|332190735|gb|AEE28856.1| putative holliday junction resolvase [Arabidopsis thaliana]
Length = 254
Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R G+AIS P L + + LL E FIIGLP +
Sbjct: 84 LGVDLGLSRTGIAIS--KGYTVKPLTVLK-SRGQKLETRLLEIAEEEEADEFIIGLPRSS 140
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E + + R+ + + +DE TT A +I M +S+ +R + D
Sbjct: 141 DGKETIQSNKIRSVAGRLAIQAAERGWRVYVFDEHGTTSEASDRMIVMGLSKSERQNRSD 200
Query: 138 SIAAALILQEVL 149
+ AA ++L+
Sbjct: 201 AYAAVILLERYF 212
>gi|325282547|ref|YP_004255088.1| Holliday junction resolvase [Deinococcus proteolyticus MRP]
gi|324314356|gb|ADY25471.1| Holliday junction resolvase [Deinococcus proteolyticus MRP]
Length = 159
Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 14/132 (10%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
+D+ +RIG A+S R A R + R+++ + + ++GLPL +G
Sbjct: 36 LDVSKRRIGFAVSQ--GRLAFGRGSVERRRLPLDLKAVRLKVEDTGAEVLVLGLPLRTDG 93
Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
+ P R+F + ++ + DER TT A R + +D AA
Sbjct: 94 AHSPAADRVRSFGRVLEEKGYR--VEYQDERFTTQRA----------RALGAEDLDEAAA 141
Query: 142 ALILQEVLDRIS 153
IL+ L R++
Sbjct: 142 VQILELWLTRMA 153
>gi|118475560|ref|YP_892282.1| Holliday junction resolvase-like protein [Campylobacter fetus
subsp. fetus 82-40]
gi|118414786|gb|ABK83206.1| putative Holliday junction resolvase [Campylobacter fetus subsp.
fetus 82-40]
Length = 124
Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID+G KRIG+A++ P ++RK Q A + L + +N ++GLP
Sbjct: 2 IVAIDVGLKRIGVAVA-VLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKG 60
Query: 79 MNGS-EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
GS E + F+ + ++ DE ++ A + +S+ + + D
Sbjct: 61 --GSCEDEMERRIKHFISLV---GFDSEIIYVDEAYSSCEASE------LSKDSKDGRFD 109
Query: 138 SIAAALILQEVLD 150
SIAA +IL+ L+
Sbjct: 110 SIAAMVILKRYLN 122
>gi|146329693|ref|YP_001209982.1| hypothetical protein DNO_1098 [Dichelobacter nodosus VCS1703A]
gi|146233163|gb|ABQ14141.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
Length = 129
Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 9/131 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID+GT G+AI A P A + + + +IGLP
Sbjct: 5 VLGIDVGTYHTGVAIGQSVTGLAKPLQRFNLPLKQVHADTFSALVQQWKVNCIVIGLPSL 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G + P I VP F DE LT+ +AQ + K I K DS
Sbjct: 65 ADGKKHPLSDEIHRLADECIK-LYGVPVHFIDETLTSHAAQ-------MRFPKTIDK-DS 115
Query: 139 IAAALILQEVL 149
AAA+I+++ L
Sbjct: 116 AAAAVIVEDFL 126
>gi|217033373|ref|ZP_03438804.1| hypothetical protein HP9810_9g126 [Helicobacter pylori 98-10]
gi|216944314|gb|EEC23739.1| hypothetical protein HP9810_9g126 [Helicobacter pylori 98-10]
Length = 134
Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NKSYTDTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|212696192|ref|ZP_03304320.1| hypothetical protein ANHYDRO_00728 [Anaerococcus hydrogenalis DSM
7454]
gi|212676821|gb|EEB36428.1| hypothetical protein ANHYDRO_00728 [Anaerococcus hydrogenalis DSM
7454]
Length = 76
Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GP+ +FV +++ ++ + + DER+TT+ + ++L+DM+V R+ R + +D
Sbjct: 1 MNNTLGPQAMKVISFV-DLLKKETDIDIKYQDERMTTIQSDKVLMDMSVKRENRKKYIDK 59
Query: 139 IAAALILQEVLDRIS 153
IAA+ ILQ LD S
Sbjct: 60 IAASFILQTYLDGRS 74
>gi|325335422|gb|ADZ11696.1| Resolvase, holliday junction-type, YqgF-like protein [Riemerella
anatipestifer RA-GD]
Length = 119
Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G R G+A +D + A + ++ L +I + A ++G
Sbjct: 1 MGQILAIDYGKARTGIAATDDMKLIASGLASVPTGELLSF---LSEYIHNNAVEAVVVGY 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
P+++ G+ S F+ + + DER T+ A +
Sbjct: 58 PVDLKGNVSEVETSILEFIEKFKVQFPEIEVHRLDERFTSKMASFFISQSG 108
>gi|317013781|gb|ADU81217.1| Holliday junction resolvase-like protein [Helicobacter pylori
Gambia94/24]
Length = 134
Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLRKKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ ++D VF +E ++V A + L + KK + +
Sbjct: 58 -NESYADTHARIEHFI-KLVD--FKGEIVFINEDNSSVEAYENLGYLGKKNKKLATKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|261839186|gb|ACX98951.1| Holliday junction resolvase-like protein [Helicobacter pylori 52]
Length = 134
Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFEGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|317180766|dbj|BAJ58552.1| Holliday junction resolvase-like protein [Helicobacter pylori F32]
Length = 134
Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAM--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF DE +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFIDEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|194476596|ref|YP_002048775.1| Holliday junction resolvase YqgF [Paulinella chromatophora]
gi|171191603|gb|ACB42565.1| Holliday junction resolvase YqgF [Paulinella chromatophora]
Length = 141
Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G RIG+A D P L R L L I+ ++ A +IG+PL
Sbjct: 9 SILCLDVGRYRIGMAGCDSLYFSISLLPALHRNNFETDLLSLKYLISERSVEALVIGIPL 68
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
N + R + ++ + + +P + +E +T S D + ++D
Sbjct: 69 NDLAQITKQAIYCRRYGKHLA-QTLRLPVAWVNENGSTWS----TSDQYKIYNDKSGRLD 123
Query: 138 SIAAALILQEVLDRIS 153
S+ AAL+L++ + +
Sbjct: 124 SMVAALLLEQWIKERN 139
>gi|309799357|ref|ZP_07693600.1| putative Holliday junction resolvase [Streptococcus infantis
SK1302]
gi|308117024|gb|EFO54457.1| putative Holliday junction resolvase [Streptococcus infantis
SK1302]
Length = 61
Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 98 IDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSIAAALILQEVLDR 151
++ +P + DERLTTV+A+++LI+ ++SR KR + +D +AA LILQ LDR
Sbjct: 5 LEELFGLPVEYQDERLTTVAAERMLIEQADISRNKRKKVIDKLAAQLILQNYLDR 59
>gi|317008982|gb|ADU79562.1| Holliday junction resolvase-like protein [Helicobacter pylori
India7]
Length = 134
Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R+ Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRRNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ ++D VF +E ++V A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFI-KLVD--FKGEIVFINEDNSSVEAYENLEHLGNKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|148270377|ref|YP_001244837.1| Holliday junction resolvase YqgF [Thermotoga petrophila RKU-1]
gi|147735921|gb|ABQ47261.1| Holliday junction resolvase YqgF [Thermotoga petrophila RKU-1]
Length = 206
Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 24/138 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G ++ G+A L +K + L FI I GLPL+
Sbjct: 2 IVAVDYGERKCGVAFG----------EILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 51
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G + T A DERLTT ++I +K D+
Sbjct: 52 MSGKYTQQTFKTIAVAFKFSKEY---ETYLCDERLTTKIGERI-----------SKKDDA 97
Query: 139 IAAALILQEVLDRISFLE 156
++AALI Q + S E
Sbjct: 98 VSAALIFQSFFENSSVCE 115
>gi|188527140|ref|YP_001909827.1| Holliday junction resolvase-like protein [Helicobacter pylori
Shi470]
gi|226725528|sp|B2USG5|RUVX_HELPS RecName: Full=Putative Holliday junction resolvase
gi|188143380|gb|ACD47797.1| Holliday junction resolvase-like protein [Helicobacter pylori
Shi470]
Length = 134
Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLNDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACGILERY 126
>gi|317181677|dbj|BAJ59461.1| Holliday junction resolvase-like protein [Helicobacter pylori F57]
Length = 134
Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +N+ ++G P
Sbjct: 2 ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADMNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|322378432|ref|ZP_08052885.1| Holliday junction resolvase-like protein [Helicobacter suis HS1]
gi|322380510|ref|ZP_08054698.1| Holliday junction resolvase [Helicobacter suis HS5]
gi|321147065|gb|EFX41777.1| Holliday junction resolvase [Helicobacter suis HS5]
gi|321149123|gb|EFX43570.1| Holliday junction resolvase-like protein [Helicobacter suis HS1]
Length = 131
Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 13/136 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIGLAI ++ P + R Q +LELL + T+ I+GLP
Sbjct: 2 IIACDIGLKRIGLAIY--AQKIILPLNSIKRINRKQASLELLHLLETKKATKLIVGLP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
++TR V + I+ + P ++ +E ++V A L ++ ++++ K
Sbjct: 58 ------HACYTTRQRVLHFINLLNFAPVIYVEEDNSSVEALTNLWHLSSKKRQKASKDGA 111
Query: 136 VDSIAAALILQEVLDR 151
+DS+AA IL+ L +
Sbjct: 112 LDSLAACEILRRYLAQ 127
>gi|207108735|ref|ZP_03242897.1| Holliday junction resolvase-like protein [Helicobacter pylori
HPKX_438_CA4C1]
Length = 156
Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 12/144 (8%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
DL S+ + I D+G KRIG+A+ P ++R Q + +L + +N
Sbjct: 14 DLTSSIACKRLIIG-DVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKN 70
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I ++G P N S F+ + VF +E +++ A + L +
Sbjct: 71 IQVLVVGKP---NESYADTNARIEYFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGK 124
Query: 128 SRKK---RIQKVDSIAAALILQEV 148
K+ + ++DS++A IL+
Sbjct: 125 KNKRLATKDGRLDSLSACRILERY 148
>gi|307637029|gb|ADN79479.1| hypothetical protein hp908_0350 [Helicobacter pylori 908]
gi|325995622|gb|ADZ51027.1| Holliday junction resolvase like protein [Helicobacter pylori 2018]
gi|325997218|gb|ADZ49426.1| Putative holliday junction resolvase [Helicobacter pylori 2017]
Length = 134
Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAM--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ ++D VF +E ++V A L + K+ + +
Sbjct: 58 -NESYADTHARIEHFI-KLVD--FKGEIVFINEDNSSVEAYDNLEHLGKKNKRLATKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|261837774|gb|ACX97540.1| hypothetical protein KHP_0327 [Helicobacter pylori 51]
Length = 134
Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
++ + ++D VF +E +++ A + L + K+ + +
Sbjct: 58 --NESYADTNACIEYFIKLLD--FKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|78213389|ref|YP_382168.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9605]
gi|146325620|sp|Q3AIG9|RUVX_SYNSC RecName: Full=Putative Holliday junction resolvase
gi|78197848|gb|ABB35613.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9605]
Length = 158
Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I S+D+G +RIGLA D P L R + + L + ++ ++GLPL
Sbjct: 7 SILSLDVGRRRIGLAGCDALGISVTPLAALRRGRFDADLVVLQAHCCERSVQGLVVGLPL 66
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
+ G + + + + + +E +T +A +Q + + S +
Sbjct: 67 DAAGQPTAQAEHCQRYGLRLAAALDLPL-AWVNEHSSTWAAGEQFGLKGDRSGR 119
>gi|315453492|ref|YP_004073762.1| Holliday junction resolvase [Helicobacter felis ATCC 49179]
gi|315132544|emb|CBY83172.1| Holliday junction resolvase [Helicobacter felis ATCC 49179]
Length = 127
Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
D+G KRIGLA+ P P ++R Q +L F+ + ++GLP
Sbjct: 2 VGCDVGLKRIGLALYTQETIL--PMPAILRHNRDQARHDLKIFLENKRAVGLVVGLP--- 56
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---V 136
TRA V + I+ + P + DE ++ AQ+ + + ++++ +K +
Sbjct: 57 ----NACYTDTRARVQHFIEGLDFAPIFYVDEDDSSAQAQERIFHLPYKQRQKARKNGIL 112
Query: 137 DSIAAALILQEVL 149
DS+AA ++L+ L
Sbjct: 113 DSLAACILLERYL 125
>gi|217031561|ref|ZP_03437066.1| hypothetical protein HPB128_21g119 [Helicobacter pylori B128]
gi|298736721|ref|YP_003729251.1| putative Holliday junction resolvase [Helicobacter pylori B8]
gi|216946761|gb|EEC25357.1| hypothetical protein HPB128_21g119 [Helicobacter pylori B128]
gi|298355915|emb|CBI66787.1| putative holliday junction resolvase [Helicobacter pylori B8]
Length = 134
Score = 84.6 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|317179270|dbj|BAJ57058.1| Holliday junction resolvase-like protein [Helicobacter pylori F30]
Length = 134
Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAM--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|308061685|gb|ADO03573.1| Holliday junction resolvase-like protein [Helicobacter pylori
Cuz20]
Length = 134
Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|15644293|ref|NP_229345.1| hypothetical protein TM1545 [Thermotoga maritima MSB8]
gi|32130074|sp|Q9X1N1|RUVX_THEMA RecName: Full=Putative Holliday junction resolvase
gi|4982112|gb|AAD36612.1|AE001800_22 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 218
Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 24/141 (17%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ++D G ++ G+A L +K + L FI I GL
Sbjct: 11 GKVIVAVDYGERKCGVAFG----------EILPQKSLVIPTKNLKEFIRKLKPDKIIFGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL+M+G + T A DERLTT ++I ++
Sbjct: 61 PLSMSGKYTQQTFKTVAVAFKFSKEY---ETYLCDERLTTKIGERI-----------SKR 106
Query: 136 VDSIAAALILQEVLDRISFLE 156
D+++AALI Q + S E
Sbjct: 107 DDAVSAALIFQSFFENSSVCE 127
>gi|254779032|ref|YP_003057137.1| Holliday junction resolvase-like protein [Helicobacter pylori B38]
gi|254000943|emb|CAX28881.1| Putative holliday junction resolvase [Helicobacter pylori B38]
Length = 134
Score = 83.8 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ ++D VF +E +++ A L + K+ + +
Sbjct: 58 -NESYADTNARIEHFI-KLVD--FKGEIVFINEDRSSIEAYDNLEHLGRKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|315586327|gb|ADU40708.1| Holliday junction resolvase family protein [Helicobacter pylori
35A]
Length = 134
Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLTIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|291277337|ref|YP_003517109.1| Holliday junction resolvase [Helicobacter mustelae 12198]
gi|290964531|emb|CBG40384.1| Putative Holliday junction resolvase [Helicobacter mustelae 12198]
Length = 131
Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D+G KRIG+A P ++R Q A +L + +N I+G+P +
Sbjct: 2 IACDIGLKRIGIAG--LIEGIILPMEPILRTNRNQAASDLSKLLKEKNAHTLIVGIPQSG 59
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---V 136
N + R FV + + ++ +E T++ A+Q L + R++ QK +
Sbjct: 60 NAEDTKR--RIMFFVSLL---ETSAKILYVNEDCTSLEARQDLSHLKKQRRQNAQKNGRI 114
Query: 137 DSIAAALILQEVL 149
DS+AA ILQ L
Sbjct: 115 DSLAACKILQRYL 127
>gi|317177150|dbj|BAJ54939.1| Holliday junction resolvase-like protein [Helicobacter pylori F16]
Length = 134
Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNAHIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|170288997|ref|YP_001739235.1| Holliday junction resolvase YqgF [Thermotoga sp. RQ2]
gi|281412683|ref|YP_003346762.1| Holliday junction resolvase YqgF [Thermotoga naphthophila RKU-10]
gi|170176500|gb|ACB09552.1| Holliday junction resolvase YqgF [Thermotoga sp. RQ2]
gi|281373786|gb|ADA67348.1| Holliday junction resolvase YqgF [Thermotoga naphthophila RKU-10]
Length = 206
Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 24/138 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G ++ G+A L +K + L FI I GLPL+
Sbjct: 2 IVAVDYGERKCGVAFG----------EILPQKSLVIPTKNLKEFIRKLKPDKIIFGLPLS 51
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G + T A DERLTT ++I ++ D+
Sbjct: 52 MSGKYTQQTFKTVAVAFKFSKEY---ETYLCDERLTTKIGERI-----------SKRDDA 97
Query: 139 IAAALILQEVLDRISFLE 156
++AALI Q + S E
Sbjct: 98 VSAALIFQSFFENSSVCE 115
>gi|308063196|gb|ADO05083.1| Holliday junction resolvase-like protein [Helicobacter pylori
Sat464]
Length = 134
Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNAHIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACGILERY 126
>gi|308182507|ref|YP_003926634.1| Holliday junction resolvase-like protein [Helicobacter pylori
PeCan4]
gi|308064692|gb|ADO06584.1| Holliday junction resolvase-like protein [Helicobacter pylori
PeCan4]
Length = 134
Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGRKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACGILERY 126
>gi|210134529|ref|YP_002300968.1| Holliday junction resolvase-like protein [Helicobacter pylori P12]
gi|226725526|sp|B6JKR0|RUVX_HELP2 RecName: Full=Putative Holliday junction resolvase
gi|210132497|gb|ACJ07488.1| holliday junction resolvase [Helicobacter pylori P12]
Length = 134
Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVVLPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ ++D VF +E +++ A L + K+ + +
Sbjct: 58 -NESYADTNVRIEHFI-KLVD--FTGEIVFINEDNSSIEAYDNLEHLGRKNKRLATKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|332673180|gb|AEE69997.1| Holliday junction resolvase family protein [Helicobacter pylori 83]
Length = 134
Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAT--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEYFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|15611385|ref|NP_223036.1| Holliday junction resolvase-like protein [Helicobacter pylori J99]
gi|32130075|sp|Q9ZMA5|RUVX_HELPJ RecName: Full=Putative Holliday junction resolvase
gi|4154855|gb|AAD05908.1| putative [Helicobacter pylori J99]
Length = 134
Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + ++I ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLRKKDIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ ++D VF +E ++V A + L + K+ + +
Sbjct: 58 -NESYADTHARIEHFI-KLVD--FKGEIVFINEDNSSVEAYENLEHLGKKNKRIATKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|260436612|ref|ZP_05790582.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
gi|260414486|gb|EEX07782.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
Length = 158
Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I S+D+G +RIGLA D P L R + + L + ++ ++G PL
Sbjct: 7 SILSLDVGRRRIGLAGCDALGISVTPLAALRRGRFDADLVVLRAHCRERSVQGLVVGFPL 66
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
+ G + + + + + +E +T +A +Q + + S +
Sbjct: 67 DDAGQPTAQAEHCQRYGLRLAAALDLPL-AWVNEHSSTWAAGEQFGLTGDRSGR 119
>gi|15807494|ref|NP_296229.1| hypothetical protein DR_2509 [Deinococcus radiodurans R1]
gi|11136112|sp|Q9RRI2|RUVX_DEIRA RecName: Full=Putative Holliday junction resolvase
gi|6460331|gb|AAF12050.1|AE002080_4 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 136
Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D+ RIG A+S R A R + RK++ + + ++GLPL
Sbjct: 17 TVLALDVSKSRIGFAVS--AGRLAFGRGSVDRKRLPLDLKAVRLKVEETGAERLVLGLPL 74
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+G P RAF ++D+ + DER TT A+ +
Sbjct: 75 RTDGKPSPTADRVRAFGRVLMDKGYT--VEYQDERFTTQRARAL 116
>gi|317012175|gb|ADU82783.1| Holliday junction resolvase-like protein [Helicobacter pylori
Lithuania75]
Length = 134
Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R+ Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ ++D VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFI-KLVD--FKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|208434282|ref|YP_002265948.1| Holliday junction resolvase-like protein [Helicobacter pylori G27]
gi|226725527|sp|B5ZAA2|RUVX_HELPG RecName: Full=Putative Holliday junction resolvase
gi|208432211|gb|ACI27082.1| Holliday junction resolvase-like protein [Helicobacter pylori G27]
Length = 134
Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ ++D VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFI-KLVD--FKGEIVFINEDNSSIEAYENLEHLGRKNKRLATKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|108562763|ref|YP_627079.1| Holliday junction resolvase-like protein [Helicobacter pylori
HPAG1]
gi|124107441|sp|Q1CUG7|RUVX_HELPH RecName: Full=Putative Holliday junction resolvase
gi|107836536|gb|ABF84405.1| hypothetical protein HPAG1_0338 [Helicobacter pylori HPAG1]
Length = 134
Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R+ Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ ++D VF +E +++ A + L + K + +
Sbjct: 58 -NESYADTNARIEHFI-KLVD--FKGEIVFINEDNSSIEAYENLEHLGKKNKWLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|163785754|ref|ZP_02180259.1| hypothetical protein HG1285_07148 [Hydrogenivirga sp. 128-5-R1-1]
gi|159878979|gb|EDP72978.1| hypothetical protein HG1285_07148 [Hydrogenivirga sp. 128-5-R1-1]
Length = 79
Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 50 KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
K E+ I ++GLP+ + G EG + TR FV + + + VF
Sbjct: 2 KNSPSVFEEIKKVINEYKPKKIVVGLPITLKGEEGEQARKTRKFVEKLKEHIPDIQIVFE 61
Query: 110 DERLTTVSAQQI 121
DER T+ A++
Sbjct: 62 DERFTSQMAEKD 73
>gi|34558179|ref|NP_907994.1| Holliday junction resolvase-like protein [Wolinella succinogenes
DSM 1740]
gi|34483898|emb|CAE10894.1| conserved hypothetical protein-Predicted endonuclease [Wolinella
succinogenes]
Length = 127
Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G KR+G+A A P ++RK Q A +L + + + G+P
Sbjct: 2 IIAVDIGLKRLGVA--QYAAGVALPLDPILRKNRHQAARDLDLLLKEKGAQKLVAGIPKE 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ SE R F+ + + F DE ++ A ++L + R+ +DS
Sbjct: 60 GSSSE-EMERRIRHFIGLL---EFRGEVCFVDESYSSKEAFELLRGRSRDRRDGK--LDS 113
Query: 139 IAAALILQEVL 149
++A +IL+ L
Sbjct: 114 LSALVILERYL 124
>gi|157363236|ref|YP_001470003.1| Holliday junction resolvase YqgF [Thermotoga lettingae TMO]
gi|157313840|gb|ABV32939.1| Holliday junction resolvase YqgF [Thermotoga lettingae TMO]
Length = 214
Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 23/139 (16%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G R GLAI + + A + +KKV + I F++GLPL+
Sbjct: 2 IVAVDYGDARCGLAIGE---KLARKIMTVEKKKVISEISRIP------FINCFVVGLPLS 52
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G + F + +R+ DERLT+ S K + +D
Sbjct: 53 MSGRYSQQTFKAIEFAEKL-NRRFKKRVYLIDERLTS------------SIFKNRENIDG 99
Query: 139 IAAALILQEV-LDRISFLE 156
+ AA I ++ ++ F E
Sbjct: 100 LCAAEIFEKFVFSKMKFHE 118
>gi|15644962|ref|NP_207132.1| Holliday junction resolvase-like protein [Helicobacter pylori
26695]
gi|32130008|sp|O25101|RUVX_HELPY RecName: Full=Putative Holliday junction resolvase
gi|2313435|gb|AAD07403.1| conserved hypothetical protein [Helicobacter pylori 26695]
Length = 134
Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQ 134
T A + + I VF +E +++ A + L + K+ +
Sbjct: 58 -----HESYADTNARIEHFIKLVDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDG 112
Query: 135 KVDSIAAALILQEV 148
++DS++A IL+
Sbjct: 113 RLDSLSACRILERY 126
>gi|222100102|ref|YP_002534670.1| Putative Holliday junction resolvase [Thermotoga neapolitana DSM
4359]
gi|221572492|gb|ACM23304.1| Putative Holliday junction resolvase [Thermotoga neapolitana DSM
4359]
Length = 207
Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 24/133 (18%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G ++ G+A L + V EL F+ N + G+PL+
Sbjct: 2 IVAIDYGERKCGVAFG----------KILPQDSVVVPTRELKKFVERLNPDKIVFGMPLS 51
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G + T + + DERLTT A VS++ D+
Sbjct: 52 MSGRYSQQTFKTVEVALSFSKKY---ETYLCDERLTTRIA------SKVSKRD-----DA 97
Query: 139 IAAALILQEVLDR 151
++AALI Q ++
Sbjct: 98 VSAALIFQSFVEN 110
>gi|109947527|ref|YP_664755.1| Holliday junction resolvase-like protein [Helicobacter acinonychis
str. Sheeba]
gi|109714748|emb|CAJ99756.1| putative Holliday junction resolvase [Helicobacter acinonychis str.
Sheeba]
Length = 134
Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R+ Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAM--LLNGIILPLEAILRQNRNQASRDLSDLLKEKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
SE + R H + VF +E +++ A + L + K + +
Sbjct: 58 ---SENYADTNIR-IGHFIKLVDFKGEIVFINEDSSSIEAYENLEYLGRKNKWLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|150020203|ref|YP_001305557.1| Holliday junction resolvase YqgF [Thermosipho melanesiensis BI429]
gi|149792724|gb|ABR30172.1| Holliday junction resolvase YqgF [Thermosipho melanesiensis BI429]
Length = 202
Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 19/137 (13%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G K+ G AI + + K T EL + + ++GLPL+
Sbjct: 2 ILALDYGEKKTGYAIGNE----------FIAKSGTIKTSELKNLLFQFK--KIVLGLPLS 49
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD- 137
M+G+ + + F + +K+ + DERLTT A+ + + + R +D
Sbjct: 50 MSGNYSTQSYKVLKFAFKL--KKMGLNVFLIDERLTTKMAEVFQANDDDAFSARQIFIDY 107
Query: 138 ----SIAAALILQEVLD 150
SIA L++ L+
Sbjct: 108 IENPSIAQEFYLEDYLE 124
>gi|254796406|ref|YP_003081242.1| hypothetical protein NRI_0006 [Neorickettsia risticii str.
Illinois]
gi|254589643|gb|ACT69005.1| conserved hypothetical protein [Neorickettsia risticii str.
Illinois]
Length = 159
Score = 80.4 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ + ++ I SID G + IG+A+SDP R+ A ++
Sbjct: 1 MITFDLQKFLGAIGTGG-IVSIDPGKRTIGVAVSDPELRYIQNYFQFASHGRGADASYIM 59
Query: 61 SFITTENIAAFIIGLP---LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
++ + I+G P + NG +HS F + + P + DE +T
Sbjct: 60 KVVSDFS--GIIVGTPFSHIRNNG----WLHSIDKFAQKLSE-ITKKPILMCDESSSTSD 112
Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
+L ++SR ++ + D IAA IL++ L
Sbjct: 113 VMVLL--GSLSRSRQKKWKDKIAACCILEKTL 142
>gi|308184138|ref|YP_003928271.1| Holliday junction resolvase-like protein [Helicobacter pylori
SJM180]
gi|308060058|gb|ADO01954.1| Holliday junction resolvase-like protein [Helicobacter pylori
SJM180]
Length = 134
Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + ++I ++G P
Sbjct: 2 ILACDVGLKRIGIAM--LLNGVVLPLEAILRHNRNQASRDLSDLLRKKDIQVLVVGKPSE 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
R+ V VF +E +++ A + L + K+ + +
Sbjct: 60 NYADTNIRIEHFIKLVD------FKGEIVFINEDRSSIEAYENLEHLGRKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|321310987|ref|YP_004193316.1| holliday junction resolvase YqgF [Mycoplasma haemofelis str.
Langford 1]
gi|319802831|emb|CBY93477.1| holliday junction resolvase YqgF [Mycoplasma haemofelis str.
Langford 1]
Length = 143
Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ--TALELLSFITT--ENIAAFII 73
+ S+D+GTK++G+A+S + P + +L + + E I +I
Sbjct: 2 RVLSLDIGTKKVGIALSSADQSLIFPVGKIRFDNFKGLIFFEKLKTELRNFWEEIGVAVI 61
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G SEG V S V M+ F E +++ + L +N S K
Sbjct: 62 GKA-----SEGNSVLSQIDQVSRMLKAWTDWDIKFISEDMSSSDSWSFLKSLNFSSNKAR 116
Query: 134 QKVDSIAAALILQEVLDRIS 153
+K+DS +A +IL++ D I+
Sbjct: 117 EKLDSYSALIILKDYFDSIN 136
>gi|307128596|ref|YP_003880626.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri CARI]
gi|306483058|gb|ADM89928.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri CARI]
Length = 138
Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ID G KRIGL+I++ R A + + T L + E+I +IGL
Sbjct: 1 MSKILCIDYGKKRIGLSITNSIRSIAFALNTVNTNDLISTLEMYLKY---EDIDTIVIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM--NVSRKKRI 133
P+ P + F+ + + + DER T+ A L++ ++K
Sbjct: 58 PIKYYNYLFPIEKKIKKFIKIIKYKYPNLIIKRLDERFTSKIANYYLLNSVFKKKKRKNK 117
Query: 134 QKVDSIAAALILQEVL 149
+D I+A L+LQ+ +
Sbjct: 118 SLLDKISATLLLQDYI 133
>gi|94984533|ref|YP_603897.1| Holliday junction resolvase YqgF [Deinococcus geothermalis DSM
11300]
gi|94554814|gb|ABF44728.1| Holliday junction resolvase YqgF [Deinococcus geothermalis DSM
11300]
Length = 232
Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+ RIG A+S + A R + RK++ + + ++GLPL
Sbjct: 105 ILALDVSKSRIGFAVS--AGQLAFGRGSVARKRLPLDLKAVRLKVEETGAELLLLGLPLR 162
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+ P RAF + D+ + DER TT A + L + D
Sbjct: 163 TDGAHSPSADRVRAFGKILADKGYR--VAYQDERFTTQRA-RALGTRDE---------DE 210
Query: 139 IAAALILQEVL 149
AA IL+ L
Sbjct: 211 AAAVQILELYL 221
>gi|289772787|ref|ZP_06532165.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|289702986|gb|EFD70415.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 172
Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + ++G
Sbjct: 15 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVAEYEPIEVVVG 74
Query: 75 LP 76
LP
Sbjct: 75 LP 76
>gi|213863107|ref|ZP_03386362.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
Length = 55
Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 99 DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
+ V DERL+TV A+ L + R KVDS +A +IL+ ++
Sbjct: 1 HGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYFEQ 53
>gi|71894392|ref|YP_278500.1| hypothetical protein MS53_0377 [Mycoplasma synoviae 53]
Length = 125
Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 30 GLAISDPGRRFAHPRPFLVRKKVTQTALELLSF-ITTENIAAFIIGLPLNMNGSEGPRVH 88
G AISD F+ + ++ + + I FIIG PLN G +
Sbjct: 2 GFAISDESNSFSLALENFDYDGSYEKIIQKIQLFLDEYKIDKFIIGYPLNSRGEKTKTCL 61
Query: 89 STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEV 148
F+ ++ ++ +E ++ A +IL N+ KK+ K D +AA +ILQ+
Sbjct: 62 LIDEFIIHL-EKNFDQKIKLINESYSSRKASEILHQANIKNKKQKDKKDMLAAKIILQDY 120
Query: 149 LD 150
LD
Sbjct: 121 LD 122
>gi|169835835|ref|ZP_02869023.1| DNA integration/recombination/invertion protein [candidate
division TM7 single-cell isolate TM7a]
Length = 71
Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G RIG+A DP A + R K+ + + E ++G+
Sbjct: 1 MRKFIGLDVGDVRIGVAKCDPLGILATALEVIDRTKIDP-IARIKEILDDEGTKKIVVGM 59
Query: 76 PLNMNGS 82
P +++GS
Sbjct: 60 PKSLDGS 66
>gi|224012605|ref|XP_002294955.1| Hypothetical protein THAPSDRAFT_264879 [Thalassiosira pseudonana
CCMP1335]
gi|220969394|gb|EED87735.1| Hypothetical protein THAPSDRAFT_264879 [Thalassiosira pseudonana
CCMP1335]
Length = 423
Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 47 LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK----- 101
+++ T ++++ +E + ++GLPL+ NGS + TR F + ++
Sbjct: 226 IIQYNNTLLCNTIINYAISEQVTNLVLGLPLHKNGSISEQSLITRQFGYELLQTVRTRMG 285
Query: 102 VYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-------QKVDSIAAALILQEV 148
WDER T+ A ++ ++R +RI +D AA +IL+
Sbjct: 286 YNANVTLWDERYTSKEAASRIVGEAIARNRRIPSASDLNGALDDEAACIILEHY 339
>gi|297181477|gb|ADI17664.1| predicted endonuclease involved in recombination (possible holliday
junction resolvase in mycoplasmas and B. subtilis)
[uncultured gamma proteobacterium HF0130_23I23]
Length = 128
Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 17/136 (12%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ S+D GTK+IG+ I++ + P P L K L I IIG P
Sbjct: 8 VLSLDFGTKKIGVCIAETYTGQSSPLPVL--KNDEHLFDNLDKIINEWLPNLCIIGKPKE 65
Query: 79 MNGSEGPRVHST-RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
M R F +R + +E T+ + VS++ + Q+ D
Sbjct: 66 MK----ENFEEAHRNFFKTFKER-YEISISEVNEDFTSQA---------VSKEHKKQEYD 111
Query: 138 SIAAALILQEVLDRIS 153
S +AALI +E ++ +
Sbjct: 112 SYSAALIFEEWFNQNN 127
>gi|255660339|ref|ZP_05405748.1| hypothetical protein MgenG_02399 [Mycoplasma genitalium G37]
Length = 128
Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 6/126 (4%)
Query: 27 KRIGLAISDPGRRFAHPRPFLVRKKVTQTALE--LLSFITT-ENIAAFIIGLPLNMNGSE 83
K+IG AI++ ++ K +TA+ L + +IG P S+
Sbjct: 2 KKIGTAIANTLDKYPSAFHVFEVKNNFKTAVNNLFLRIKNDGYELEKIVIGFPKFHYYSD 61
Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
+ +++++ +P + DE TT + + LI M++ K + D++AA L
Sbjct: 62 ---IQKAIKSFKQLLEKRFNLPIILVDESNTTSAVKDKLITMDLKHKDFKKAKDTLAAVL 118
Query: 144 ILQEVL 149
IL+
Sbjct: 119 ILERFF 124
>gi|160901820|ref|YP_001567401.1| Holliday junction resolvase YqgF [Petrotoga mobilis SJ95]
gi|160359464|gb|ABX31078.1| Holliday junction resolvase YqgF [Petrotoga mobilis SJ95]
Length = 230
Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 6/129 (4%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
ID GT G+AI P+ + +K LE L + + + GLP++M+
Sbjct: 11 GIDYGTSNCGIAILKQDVNIPLPKETIKSEK----LLEFLVSLDLSHDDLIVFGLPISMS 66
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G + + I K+ F DERLTT S + VS KK + D +
Sbjct: 67 GRYSKQSFLSIDEAIK-IKEKIGCKIYFVDERLTTSSLYSEVR-GQVSYKKVKRTKDQNS 124
Query: 141 AALILQEVL 149
+ LIL +
Sbjct: 125 SVLILSNFI 133
>gi|325846691|ref|ZP_08169606.1| Holliday junction resolvase-like protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481449|gb|EGC84490.1| Holliday junction resolvase-like protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 67
Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 88 HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQE 147
+FV +++ ++ + + DER+TT+ + +IL+DM+V R+ R + +D IAA+ ILQ
Sbjct: 1 MKVISFV-DLLKKETDIDIKYQDERMTTIQSNKILMDMSVKRENRKKYIDKIAASFILQT 59
Query: 148 VLDRIS 153
LD S
Sbjct: 60 YLDGRS 65
>gi|330872144|gb|EGH06293.1| Holliday junction resolvase-like protein [Pseudomonas syringae
pv. glycinea str. race 4]
Length = 66
Score = 73.4 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66
>gi|224032587|gb|ACN35369.1| unknown [Zea mays]
Length = 146
Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 50 KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFV 107
+ A + + ++ +IA F++G P + G + + + +P+
Sbjct: 30 TNINLMADDFKTLVSMYSIAGFVVGYPFKIYGQPCASAIQV-SLAGELCKTGKLDDLPYA 88
Query: 108 FWDERLTTVSAQQILIDMNVSR-KKRIQKVDSIAAALILQEVLDRIS 153
+WDE T+ + +L +N+ D AA ILQ LD ++
Sbjct: 89 YWDENFTSKCVEALLHPLNLKDLDDAKTMTDKFAAVCILQGYLDNMN 135
>gi|297180573|gb|ADI16785.1| predicted endonuclease involved in recombination (possible holliday
junction resolvase in mycoplasmas and B. subtilis)
[uncultured gamma proteobacterium HF0010_11B23]
Length = 128
Score = 72.7 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 15/139 (10%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
K + + S+D GTK IG+ I++ P P + + EL + + +I
Sbjct: 3 KEAKVVLSLDYGTKNIGICIAETYTGQTKPLPVI--ENNDSFYTELDNLLKEWRPNIVLI 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G+P M+ ++ +A++ N + + +E TT + + K+
Sbjct: 61 GIPPKMSSDFNDGLNEAKAYIINEHK----IKVIEVNEDFTT---------QGLDKCKKN 107
Query: 134 QKVDSIAAALILQEVLDRI 152
DS +A LI Q+ + I
Sbjct: 108 HMKDSYSAELIFQDWFNDI 126
>gi|88608671|ref|YP_505909.1| hypothetical protein NSE_0006 [Neorickettsia sennetsu str.
Miyayama]
gi|88600840|gb|ABD46308.1| conserved hypothetical protein [Neorickettsia sennetsu str.
Miyayama]
Length = 159
Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 13/152 (8%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ + +++ + SID G + +G+A+SDP R+ A ++
Sbjct: 1 MITFDLQKFLGAIEAG-RVISIDPGRRIVGVAVSDPELRYIQNYFQFTSHGRGADAFHIM 59
Query: 61 SFITTENIAAFIIGLP---LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
++ + I+G P + NG + F + + P + DE +T
Sbjct: 60 KVVSDFS--GIIVGTPFSHIRNNG----WLDFIDKFAQKLSE-VTRKPILMCDESSSTSD 112
Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
+L ++SR ++ + D IAA IL++ L
Sbjct: 113 VMILL--SSLSRSRQKEWKDKIAACCILEKTL 142
>gi|307297757|ref|ZP_07577563.1| LOW QUALITY PROTEIN: Holliday junction resolvase YqgF
[Thermotogales bacterium mesG1.Ag.4.2]
gi|306917017|gb|EFN47399.1| LOW QUALITY PROTEIN: Holliday junction resolvase YqgF
[Thermotogales bacterium mesG1.Ag.4.2]
Length = 132
Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 9/129 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID GT RIGLA+ P + + LL I + I +IGLP++M
Sbjct: 4 LGIDFGTSRIGLALQVENIEI--PLFAIDHTGYKKN---LLRIIEEKGIEEIVIGLPISM 58
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G +F + DE LTT +A+++ + K
Sbjct: 59 SGRFSESTLKAVSFAEK-VKSIFPGRVFLVDETLTTETARRLSSEAGQDFSKARDV---F 114
Query: 140 AAALILQEV 148
+A IL+
Sbjct: 115 SAIQILRNY 123
>gi|145354506|ref|XP_001421524.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581761|gb|ABO99817.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 202
Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 34/171 (19%)
Query: 7 EDLVKSLKPNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLS 61
++L + + + +D G +R+GLA+S+ G P L T T +L
Sbjct: 25 DELRAARRARGDVIALGVDYGARRVGLAVSN-GGAAPRPLRTLTHSGTATTTSTVRAILD 83
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTR--------------AFVHNMID-------- 99
E ++G+P+ G R F + D
Sbjct: 84 VALEECCDRIVVGIPVP----PGRAAKDRRGRGRGAVQMHAVCARFAGEVADACARSTNA 139
Query: 100 RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ +DE T+ A + + S + +DS +AA++L+ D
Sbjct: 140 ETKALVVYTYDESRTSKEASERIATSGGSNEN--GALDSASAAILLERYFD 188
>gi|169835834|ref|ZP_02869022.1| DNA integration/recombination/invertion protein [candidate division
TM7 single-cell isolate TM7a]
Length = 75
Score = 70.7 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 97 MIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSIAAALILQEVLDRI 152
+ + F DER TT A+ L + + K+R + VD +AA++ILQ+ LD +
Sbjct: 18 LKKNIPNIQIFFVDERYTTTEAEHYLKNYSKKNGKERRKVVDMVAASIILQKYLDTL 74
>gi|308812223|ref|XP_003083419.1| Beta-fructofuranosidase (invertase) (ISS) [Ostreococcus tauri]
gi|116055299|emb|CAL57695.1| Beta-fructofuranosidase (invertase) (ISS) [Ostreococcus tauri]
Length = 224
Score = 70.4 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 27/152 (17%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFIIGLP 76
+D G +RIGLA+SD P + + +A E+ E ++G+P
Sbjct: 66 LGVDYGARRIGLAVSD-SGMAPRPLRTMEHRGSATTGASAREVAETAARECCDRIVVGVP 124
Query: 77 LNM----NGSEGPRVHSTR------AFVHNMIDRKV--------YVPFVFWDERLTTVSA 118
G + R F + D V DE T+V A
Sbjct: 125 KQPGRGMKDRRGRGRGAVRMDLICARFAGEVADALARSEDANARAVTVYTLDESRTSVEA 184
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + + VD+ +AA++L+ D
Sbjct: 185 AERMEASGST-----NSVDAASAAILLERYFD 211
>gi|302847257|ref|XP_002955163.1| hypothetical protein VOLCADRAFT_106688 [Volvox carteri f.
nagariensis]
gi|300259455|gb|EFJ43682.1| hypothetical protein VOLCADRAFT_106688 [Volvox carteri f.
nagariensis]
Length = 215
Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 63/146 (43%), Gaps = 17/146 (11%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFIIGL 75
+ +D GT GLA+ G P + K++ A ++L+ + + ++G+
Sbjct: 40 VLGVDYGTSITGLALGRNGWC--SPLKSIPSLRTSKLSDVARQVLATALEQRVEGMVVGI 97
Query: 76 PLNMNG------SEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQIL---ID 124
P+ G ++ R H + ++ +P ++E+ TT + + L
Sbjct: 98 PVQPGGSIVKPHTDSRLGSRCRNLAHTLALMAKEHGIPVYLYNEKDTTRATMKTLGYNWT 157
Query: 125 MNVSRKKRIQ-KVDSIAAALILQEVL 149
+S +++ K+DS +AA++L+
Sbjct: 158 DRLSGQEKQACKLDSESAAMLLRLYF 183
>gi|217076673|ref|YP_002334389.1| putative Holliday junction resolvase [Thermosipho africanus TCF52B]
gi|217036526|gb|ACJ75048.1| putative Holliday junction resolvase [Thermosipho africanus TCF52B]
Length = 202
Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 24/126 (19%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G + G AI + + K +++ I+ N ++G+PL+
Sbjct: 2 IIAIDYGNSKCGYAIGN----------NFISKSGAVKTKDIMKLIS--NAKKIVMGIPLS 49
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+ + F +N++++ DERLTT A I + D+
Sbjct: 50 MSGNYSTQSLKVLTFANNLVEKGYD--VFLIDERLTTKMASSFGIKDD----------DA 97
Query: 139 IAAALI 144
+A I
Sbjct: 98 FSARQI 103
>gi|213617507|ref|ZP_03372333.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 47
Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 108 FWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
DERL+TV A+ L + R KVDS +A +IL+ ++
Sbjct: 2 LHDERLSTVEARSGLFERGGYRALNKGKVDSASAVIILESYFEQ 45
>gi|154249032|ref|YP_001409857.1| Holliday junction resolvase YqgF [Fervidobacterium nodosum Rt17-B1]
gi|154152968|gb|ABS60200.1| Holliday junction resolvase YqgF [Fervidobacterium nodosum Rt17-B1]
Length = 226
Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 27/136 (19%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +ID G + G AI + F + ++ I +G+PL
Sbjct: 2 SIIAIDYGKSKCGYAIGN---VFVSESGTIKTSEIHTKISSFKKII---------LGIPL 49
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+M+G+ + F ++ + +F DERLTT A + + + D
Sbjct: 50 SMSGNYSTQTFEVIKFGIKLLKQ--GKEVLFIDERLTTQMA----------KTYQKKDDD 97
Query: 138 SIAAALILQEVLDRIS 153
+A +L LD I+
Sbjct: 98 RFSAEQLL---LDYIN 110
>gi|255626817|gb|ACU13753.1| unknown [Glycine max]
Length = 110
Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 56 ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERL 113
A +L S I ++ F+IG+P + + + F+ N+ K+ V + +W+E
Sbjct: 2 ASDLESLIAKYSLKGFVIGIPFDKH-QVSSDAMQVKVFIDNLCRTKMLEGVKYAYWNESF 60
Query: 114 TTVSAQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153
T+ + + +L +N++ +D AA ILQ LD ++
Sbjct: 61 TSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVN 101
>gi|289758683|ref|ZP_06518061.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289714247|gb|EFD78259.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length = 107
Score = 65.4 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 26/66 (39%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
ID+G RIG+A SDP A P + R + + L + I+
Sbjct: 19 PGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIV 78
Query: 74 GLPLNM 79
GLP +
Sbjct: 79 GLPRTL 84
>gi|320335781|ref|YP_004172492.1| Holliday junction resolvase [Deinococcus maricopensis DSM 21211]
gi|319757070|gb|ADV68827.1| Holliday junction resolvase [Deinococcus maricopensis DSM 21211]
Length = 131
Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 14/131 (10%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+ RIG A+ A R R ++ + E ++GLPL
Sbjct: 6 VLALDVSKTRIGYAV--NVGDLAFGRGSRDRTTLSADLKAVAKKAHHEGATLLLLGLPLR 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+ R+F + R + DER TT A + L ++ D
Sbjct: 64 TDGAPSAVADRVRSFGSAL--RAAGHTVQYQDERFTTQRA-RDLGAADL---------DE 111
Query: 139 IAAALILQEVL 149
AA IL+ L
Sbjct: 112 AAAVQILELYL 122
>gi|291533811|emb|CBL06924.1| Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Megamonas hypermegale ART12/1]
Length = 62
Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
I S+D+G + +G+A+SD A + RK +
Sbjct: 2 RIMSLDIGDRTVGIAVSDELLFTAQGVETIRRKSYKHDLARIRELSKQYE 51
>gi|226355270|ref|YP_002785010.1| Holliday junction resolvase [Deinococcus deserti VCD115]
gi|226317260|gb|ACO45256.1| putative Holliday junction resolvase [Deinococcus deserti VCD115]
Length = 139
Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+ RIG A+ + A R + RK++ + + ++GLPL
Sbjct: 14 VLALDVSKSRIGFAV--NLGQLAFGRGSVDRKRLPLDLKAVRLKVEETGATLLLLGLPLR 71
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+G+ P RAF + D+ + DER TT A+++
Sbjct: 72 TDGAPSPTADRVRAFGRVLTDKGYR--VAYQDERFTTRRAREL 112
>gi|332295431|ref|YP_004437354.1| Resolvase RNase H domain protein fold protein [Thermodesulfobium
narugense DSM 14796]
gi|332178534|gb|AEE14223.1| Resolvase RNase H domain protein fold protein [Thermodesulfobium
narugense DSM 14796]
Length = 134
Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 23/141 (16%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID G+ +IG AI D + ++ + L FI I ++G
Sbjct: 2 ILGIDAGSYKIGYAILDERYNI-FSKGIILLNDFKKDFLR---FIKEYEIEVVVVG---- 53
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM--NVSRKKRI--- 133
+G+ + + + + + ER T+V A+ I+
Sbjct: 54 -SGTGH---KKVMKLIDEL---NLDLKVIVISERNTSVEAKWRYINSLKGFKGFFCKLFG 106
Query: 134 ---QKVDSIAAALILQEVLDR 151
+ VD I+A +I + L+
Sbjct: 107 YLDKPVDDISAVIIAERYLNE 127
>gi|213622573|ref|ZP_03375356.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 40
Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116
PLNM+G+E P R F N I + V DERL+TV
Sbjct: 1 PLNMDGTEQPLTARARKFA-NRIHGRFGVTVTLHDERLSTV 40
>gi|227498580|ref|ZP_03928724.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904036|gb|EEH89954.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 133
Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 25/144 (17%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ID G + G A+ + + L+ + + + L + + ++G
Sbjct: 1 MKKILGIDPGKDKTGAALCEESGKILR-CEVLLMEHFLASLQKFLDHV---PVTECVLG- 55
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
NG+ + T ++ + DE +T A+Q+ ++ +
Sbjct: 56 ----NGTTSASMQKT------LLAAYPDLAIHIIDEAHSTEEARQLYWKLHPPKGLMKLI 105
Query: 134 --------QKVDSIAAALILQEVL 149
+D +AA +++Q L
Sbjct: 106 PLGMRTPPGNMDGLAAVILVQRYL 129
>gi|126660442|ref|ZP_01731551.1| hypothetical protein CY0110_23026 [Cyanothece sp. CCY0110]
gi|126618255|gb|EAZ89015.1| hypothetical protein CY0110_23026 [Cyanothece sp. CCY0110]
Length = 139
Score = 57.3 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 26/146 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G + G+AI+D + + + +Q L I +I ++G
Sbjct: 9 LLGFDPGRDKCGVAIADKLGNI-YYHEVI---ESSQAISTLNHLIEQFSIKFLVMG---- 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDM----NVSRKKRI 133
N + + + + + V VP F DER +T+ A+ +M + R
Sbjct: 61 -NQTTS------KQWKKQLENELLVSVPIFFIDERNSTLEARDRYWEMYPPQGLMRLVPK 113
Query: 134 QK------VDSIAAALILQEVLDRIS 153
+D I A L+++ + I
Sbjct: 114 GMRNPPRPIDDIVAILLIERYFNSIK 139
>gi|165924192|ref|ZP_02220024.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA
334]
gi|165916368|gb|EDR34972.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA
334]
Length = 60
Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 15 PNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
PNQ + D G KRIG+A+ A+ L + ++ I T +
Sbjct: 2 PNQNLIALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVL 60
>gi|325846601|ref|ZP_08169516.1| Holliday junction resolvase-like domain protein [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325481359|gb|EGC84400.1| Holliday junction resolvase-like domain protein [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 38
Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV 52
I +DLG K IG+A+SDP A + RKK+
Sbjct: 1 MSRIMGLDLGDKTIGVALSDPFFITAQAYLTIKRKKL 37
>gi|172035379|ref|YP_001801880.1| putative resolvase, RNase H-like fold [Cyanothece sp. ATCC 51142]
gi|171696833|gb|ACB49814.1| putative resolvase, RNase H-like fold [Cyanothece sp. ATCC 51142]
Length = 139
Score = 55.0 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 24/150 (16%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
K + + D G + G+AI+D + + + + +Q L + I +I ++
Sbjct: 4 KSSSMVLGFDPGRDKCGVAIADNKGKI-YYHEVV---ESSQGISTLNNLIEQFSINFLVM 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM----NVSR 129
G N + + + V VP V DER +T+ A+ +M + R
Sbjct: 60 G-----NQTTSKQWKKQLE-----SELLVSVPIVLIDERNSTLEARDRYWEMYPPQGLMR 109
Query: 130 KKRIQK------VDSIAAALILQEVLDRIS 153
+D I A L+++ + I
Sbjct: 110 LLPKGMRNPPRPIDDIVAILLIERYFNSIK 139
>gi|145516242|ref|XP_001444015.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411415|emb|CAK76618.1| unnamed protein product [Paramecium tetraurelia]
Length = 139
Score = 54.6 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 12/137 (8%)
Query: 19 IASIDLGTKRIGLAIS-DPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGL 75
+ IDLGT G ++S + + + + + L ++ I E I +IG
Sbjct: 12 LMGIDLGTAFTGFSVSYNLQQVLVYDLHYSPCYSPHDSTLYKRIIQIINKEKIGGILIGK 71
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +G T+ N++ + E TT A++I S+
Sbjct: 72 PSF---EKGYIEEFTKGLESNLVAEGLKTFITQVGEDYTTKQAKKI------SKTNNKFL 122
Query: 136 VDSIAAALILQEVLDRI 152
D +AA LILQ L+ +
Sbjct: 123 HDGMAAMLILQSFLNEL 139
>gi|332712311|ref|ZP_08432239.1| putative endonuclease involved in recombination [Lyngbya majuscula
3L]
gi|332349117|gb|EGJ28729.1| putative endonuclease involved in recombination [Lyngbya majuscula
3L]
Length = 133
Score = 54.6 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 30/144 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + G+A+ + + + + I ++G
Sbjct: 2 ILGFDPGRDKCGVAVMEKDGQLLT-HEVVA---SGNAIAKFQQLCQQFPIETIVMG---- 53
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQ------------QILIDM 125
+ + + + + + VP V DER +++ A+ Q LI
Sbjct: 54 ------DQT-TAKRWKQKIKEELPASVPIVLVDERYSSLEARPRYWQMYPPKGFQRLIPQ 106
Query: 126 NVSRKKRIQKVDSIAAALILQEVL 149
+ + R +D I A L+++ +
Sbjct: 107 GMRQPPR--PIDDIVAILLIERYI 128
>gi|67925371|ref|ZP_00518722.1| Ribonuclease RNase H fold containing [Crocosphaera watsonii WH
8501]
gi|67852786|gb|EAM48194.1| Ribonuclease RNase H fold containing [Crocosphaera watsonii WH
8501]
Length = 140
Score = 53.4 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 30/150 (20%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I D G + G+AI+D + + + +Q L + + I ++ ++G
Sbjct: 7 SKILGFDPGRDKCGIAITDKKGNI-YYHQVI---ESSQAILTINTLIKQFSVNLLVLG-- 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQ------------ILI 123
N + + + + + + +P DER +T+ A+ L+
Sbjct: 61 ---NQTTS------KQWRKRLDNELLMSIPIELIDERNSTLEARDRYWKMYPPQGLMRLL 111
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ R +D I A L+++ I+
Sbjct: 112 PQGMRNPPR--PIDDIVAILLIERYFKSIN 139
>gi|159027740|emb|CAO89610.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 130
Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 30/143 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + G+A+ + + +Q L S I ++G
Sbjct: 3 ILGFDPGKDKCGIAVRSSTGKIYT-HEVIA---SSQAIEHLASLCQQYPIELLVMG---- 54
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ------------QILIDMN 126
N + I +V +P DER +T+ A+ Q LI
Sbjct: 55 -NQTTSKSW-------REKIAARVTIPITLVDERNSTLEARDRYWQMFPPKGLQKLIPQG 106
Query: 127 VSRKKRIQKVDSIAAALILQEVL 149
+ R +D I A L+++ L
Sbjct: 107 MRLPDR--PIDDIVAILLIERHL 127
>gi|282899412|ref|ZP_06307379.1| Resolvase, RNase H-like protein fold protein [Cylindrospermopsis
raciborskii CS-505]
gi|281195676|gb|EFA70606.1| Resolvase, RNase H-like protein fold protein [Cylindrospermopsis
raciborskii CS-505]
Length = 158
Score = 52.6 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 26/151 (17%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+K I D G + G+A+ + H + K Q + F TT +I+ +
Sbjct: 8 IKTQSTILGFDPGRDKCGVAVMGIDLKLYH-HEVVPAK---QVITRISDFRTTFSISRIV 63
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSR-- 129
+G + + + + + + DER TT++A+ M R
Sbjct: 64 MG-----------NQTTAKTWQQQLEQELNPSLDIILVDERYTTLAARDRYWQMFPPRGL 112
Query: 130 --------KKRIQKVDSIAAALILQEVLDRI 152
++ + +D I A L+++ L+ +
Sbjct: 113 TSLVPKGLRQPPRVIDDIVAILLIERYLEEL 143
>gi|258645767|ref|ZP_05733236.1| conserved hypothetical protein [Dialister invisus DSM 15470]
gi|260403138|gb|EEW96685.1| conserved hypothetical protein [Dialister invisus DSM 15470]
Length = 144
Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G+ + G+A+ A + + + + E+ + +I ++G
Sbjct: 2 ILALDPGSVKTGVAVVHKDGSLAW-KKVIQTEDFEK---EVQGVLDAYDIGVIVMG---- 53
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
NG+ + + V + +R+ V DE+ TT +
Sbjct: 54 -NGTHHKEMQ--QRTVMLLKEREKNVKIELVDEKYTTEMGE 91
>gi|282897295|ref|ZP_06305297.1| Resolvase, RNase H-like protein fold protein [Raphidiopsis brookii
D9]
gi|281197947|gb|EFA72841.1| Resolvase, RNase H-like protein fold protein [Raphidiopsis brookii
D9]
Length = 150
Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 26/150 (17%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+K I D G + G+A+ R+ H + K Q + F TT +I+ +
Sbjct: 8 IKTQSTILGFDPGRDKCGVAVMGIDRKLYH-HEVVPAK---QVITRISDFRTTFSISTIV 63
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSR-- 129
+G + + + + + + DER TT++A+ M R
Sbjct: 64 MG-----------NQTTAKTWKQQLEQELNPSLDIILVDERYTTLAARDRYWQMFPPRGL 112
Query: 130 --------KKRIQKVDSIAAALILQEVLDR 151
++ + +D I A L+++ L+
Sbjct: 113 TNLVPKGLRQPPRVIDDIVAILLIERYLEE 142
>gi|166363434|ref|YP_001655707.1| hypothetical protein MAE_06930 [Microcystis aeruginosa NIES-843]
gi|166085807|dbj|BAG00515.1| hypothetical protein MAE_06930 [Microcystis aeruginosa NIES-843]
Length = 130
Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 30/143 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + G+A+ + + +Q L S + ++G
Sbjct: 3 ILGFDPGKDKCGIAVRSSTGKIYT-HEVIA---SSQAIERLASLCQQYPLELLVMG---- 54
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ------------QILIDMN 126
N + A ++ +P DER +T+ A+ Q LI
Sbjct: 55 -NQTTSKSWRQKIA-------ARITIPITLVDERNSTLEARDRYWQMFPPKGLQKLIPQG 106
Query: 127 VSRKKRIQKVDSIAAALILQEVL 149
+ R +D I A L+++ L
Sbjct: 107 MRLPDR--PIDDIVAILLIERHL 127
>gi|17231886|ref|NP_488434.1| hypothetical protein alr4394 [Nostoc sp. PCC 7120]
gi|17133530|dbj|BAB76093.1| alr4394 [Nostoc sp. PCC 7120]
Length = 148
Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 27/155 (17%)
Query: 10 VKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + P QP I D G + GLA+ R+ + + + A+ +++ + +
Sbjct: 3 LSAFSPTQPVILGFDPGKDKCGLAVMGLDRQL-----YYHQVVASADAIAIINTLRQQFP 57
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNV 127
+ ++ M + + + + V DER +T+ A+ M
Sbjct: 58 ISMLV-----MGNQTT-----AKRWKQQLQQELAEALNIVLVDERYSTLEARDRYWQMYP 107
Query: 128 SRKKRI----------QKVDSIAAALILQEVLDRI 152
+ + +D I A L+++ L+R+
Sbjct: 108 PKGLTKLLPHGMRQPPRPIDDIVAILLIERYLNRL 142
>gi|119513399|ref|ZP_01632431.1| hypothetical protein N9414_19502 [Nodularia spumigena CCY9414]
gi|119461949|gb|EAW42954.1| hypothetical protein N9414_19502 [Nodularia spumigena CCY9414]
Length = 147
Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 35/163 (21%)
Query: 4 LLIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
+ + P QP I D G + GLA+ R+ + + +K T L
Sbjct: 1 MTFSEF----SPTQPVILGFDPGKDKCGLAVMGLDRQL-YYHQVVTAQKAIATIETLRQ- 54
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQI 121
++ ++G N + + + + + V + + DER +T+ A+
Sbjct: 55 --QFPVSLLVMG-----NQTTS------KQWKQQLREALVEQLSIILVDERYSTLEARDR 101
Query: 122 ------------LIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
L+ + + R +D I A L+++ L+R+
Sbjct: 102 YWQMYPPKGLTKLLPQGMRQPPR--PIDDIVALLLIERYLNRL 142
>gi|255082690|ref|XP_002504331.1| predicted protein [Micromonas sp. RCC299]
gi|226519599|gb|ACO65589.1| predicted protein [Micromonas sp. RCC299]
Length = 405
Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 6 IEDLVKSLKPNQPI---ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
++D KSL+ + + +D GT+R G+A+S G P + + ++
Sbjct: 82 LDDEFKSLRAARGVVTALGVDYGTRRAGIAVS-VGGASPRPVAVVPATPPGELIDAVVRA 140
Query: 63 ITTENIAAFIIGLPL 77
E ++GLP
Sbjct: 141 AVRERADVIVVGLPK 155
Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 26/103 (25%)
Query: 71 FIIGLPLN----MNGSEGPRVHS-------TRAFVHNMIDR-------KVYVPFVFWDER 112
+G P N +GS R + R F N+ D V DE
Sbjct: 286 VAVGSPPNRRTEDDGSTNRRGRAPVKMHVLARRFAENLADAVRDAGLGAKGTRVVMVDES 345
Query: 113 LTTVSAQQILIDM------NVSRKKRIQKVDSIAAALILQEVL 149
T+ A+ LI + + R +D IAA ++L
Sbjct: 346 ATS--AEADLIASTARGGRGLKDRPRGAHLDDIAAGVLLDRYF 386
>gi|220909831|ref|YP_002485142.1| Resolvase RNase H domain-containing protein fold protein
[Cyanothece sp. PCC 7425]
gi|219866442|gb|ACL46781.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
7425]
Length = 137
Score = 50.7 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 30/149 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G ++ G+A+ R H + + S T I+ ++G
Sbjct: 2 ILGFDPGRQKCGIAVMGLDRSI-HYHQVV---SSEAAIATIESLRQTYPISLLVMG---- 53
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQ------------ILIDM 125
+ + + + + + + DER +T++A+ LI
Sbjct: 54 ------DQT-TAKQWKQKLSQSLPQPLTIISVDERYSTLTARDRYWQMYPPRGLYRLIPK 106
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ R VD I A ++++ L+R+++
Sbjct: 107 GMRGTPR--PVDDIVAIVLIERYLERLTY 133
>gi|218246877|ref|YP_002372248.1| Resolvase RNase H domain-containing protein fold protein
[Cyanothece sp. PCC 8801]
gi|257059919|ref|YP_003137807.1| resolvase RNase H domain protein [Cyanothece sp. PCC 8802]
gi|218167355|gb|ACK66092.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
8801]
gi|256590085|gb|ACV00972.1| resolvase RNase H domain protein [Cyanothece sp. PCC 8802]
Length = 140
Score = 50.7 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 26/151 (17%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDP-GRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
++KP + I D G + GLA+ D + H L S I
Sbjct: 2 NIKPPEIILGFDPGRDKCGLAVRDQKDQILYHEV-----VSSEAAIATLKSVSQQYPIDL 56
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM----N 126
++G N + + + P V DER +++ A+ M
Sbjct: 57 LVMG-----NQTTSKQWKKQLE-----SELSPTFPIVMVDERNSSLEARDRYWQMYPPQG 106
Query: 127 VSRKKRIQK------VDSIAAALILQEVLDR 151
++R +D I A L+++ L+
Sbjct: 107 LTRLIPQGMRLPPCPIDDIVAILLIERYLNN 137
>gi|119484735|ref|ZP_01619217.1| hypothetical protein L8106_14720 [Lyngbya sp. PCC 8106]
gi|119457553|gb|EAW38677.1| hypothetical protein L8106_14720 [Lyngbya sp. PCC 8106]
Length = 136
Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 50/146 (34%), Gaps = 30/146 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + G+A+ + + + T+ L S I ++G
Sbjct: 5 ILGFDPGKDKCGIAVMENNNQL-QYHQVIP---STEAIKTLQSLCQQFPIHLCVMG---- 56
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQ------------ILIDM 125
N + +++ + + + + DER +++ A+ LI
Sbjct: 57 -NQTTS------KSWKQKLSEALPNTLQIILVDERYSSLEARDRYWQMYPPQGLTRLIPQ 109
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
+ R +D + A ++++ L +
Sbjct: 110 GMRTPPR--PIDDLVAIILIERYLSQ 133
>gi|224032053|gb|ACN35102.1| unknown [Zea mays]
Length = 167
Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 1 MSILLIEDLVKSL------KPNQPIASIDLGTKRIGLAISDPGRRFAHPR 44
M +L E+L + + + +D+G+K +G+AISD R A P
Sbjct: 1 MRLLQAEELFRKVLEVGSKNKAARLLGLDVGSKYVGVAISDEKNRVAMPL 50
>gi|238927584|ref|ZP_04659344.1| resolvase, RNase H domain protein [Selenomonas flueggei ATCC 43531]
gi|238884509|gb|EEQ48147.1| resolvase, RNase H domain protein [Selenomonas flueggei ATCC 43531]
Length = 132
Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 28/144 (19%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +ID G ++ G+A+ A L T ++ + I+G
Sbjct: 2 SGNILAIDPGREKCGVAV-----LAADGTVLLQEVIPTARLADVTGALLERYAPTVIMG- 55
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
NG+ + V + DE TT +A+ + R R
Sbjct: 56 ----NGTTSAAAKAC---VEELGH-----EVNLVDEYRTTDAAKCAYWAAHPPRGWRRFV 103
Query: 136 ----------VDSIAAALILQEVL 149
VD A ++ Q L
Sbjct: 104 PRGMLVPPVPVDDFVAVILAQRYL 127
>gi|218437377|ref|YP_002375706.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
7424]
gi|218170105|gb|ACK68838.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
7424]
Length = 132
Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 34/150 (22%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL---SFITTENIAAFIIGL 75
I D G + G+A+ R+ + +V ++ + + + I ++G
Sbjct: 2 ILGFDPGRDKCGVAVMGNDRQ-------IYDHQVVESDRAIAVVNALLKEYPIEILVMG- 53
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI------------LI 123
+ I+ +P V DER +++ A+ LI
Sbjct: 54 --------NQTTAKSWK-AKLEIELSQSIPIVLVDERNSSMEARDRYWEMYPPKGIKWLI 104
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ R +D I A L+++ L ++S
Sbjct: 105 PQGMRLPPR--PIDDIVAILLIERYLGQLS 132
>gi|298490371|ref|YP_003720548.1| resolvase RNase H domain-containing protein fold protein ['Nostoc
azollae' 0708]
gi|298232289|gb|ADI63425.1| Resolvase RNase H domain protein fold protein ['Nostoc azollae'
0708]
Length = 145
Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 26/146 (17%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I D G + G+A+ R+ + + A+ + + + I+
Sbjct: 7 AILGFDPGRDKCGVAVMGVDRQL-----YDHQVVAGNDAIAHIEILRRKFPIFLIV---- 57
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDM----NVSRKKR 132
G + + + + + + + DER TT+ A++ M +++
Sbjct: 58 -----MGDQT-TAKKWKQQLNQELTDMLNIILIDERYTTLEARERYWQMFPPTGLTKLLP 111
Query: 133 IQK------VDSIAAALILQEVLDRI 152
+D I A L+++ L+R+
Sbjct: 112 KGMRQPPRPIDDIVAILLIERYLNRL 137
>gi|16331716|ref|NP_442444.1| hypothetical protein sll0832 [Synechocystis sp. PCC 6803]
gi|1001270|dbj|BAA10514.1| sll0832 [Synechocystis sp. PCC 6803]
Length = 151
Score = 48.8 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 34/146 (23%)
Query: 20 ASIDLGTKRIGLAI--SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
D G + G+A+ D + + ++V Q L + + ++G
Sbjct: 19 LGFDPGRDKCGVAVMTGDRQILY---HETIAAQEVPQ---RLPALCEQYQVEQVVMG--- 69
Query: 78 NMNGSEGPRVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQ------------ILID 124
+ + + + + +E+ +TV A+Q L+
Sbjct: 70 --------NQTTAKQWQKQLQSYLLPAMALALVNEKNSTVEARQRYWQMYPPQGLGRLVP 121
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD 150
+ + R VD I A L+++ LD
Sbjct: 122 LGLRTPPR--PVDDIVAILLIERYLD 145
>gi|303288922|ref|XP_003063749.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454817|gb|EEH52122.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 296
Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G +R GLA+S P + + ++ E I+GLP
Sbjct: 80 LGVDYGRRRTGLAVS-STGASPIPLAVIPSVPPHELVRAVVDAARRERATEIIVGLPTQP 138
Query: 80 NGSE 83
SE
Sbjct: 139 AASE 142
>gi|220932583|ref|YP_002509491.1| Resolvase RNase H domain protein fold protein [Halothermothrix
orenii H 168]
gi|219993893|gb|ACL70496.1| Resolvase RNase H domain protein fold protein [Halothermothrix
orenii H 168]
Length = 131
Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 16/111 (14%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +ID G + G+A+ D + + + L ++ ++G
Sbjct: 2 VLAIDPGRDKCGIAVVDRNLKI----FYRAIVSPGKLGSYLQKLSHRYSLEGIVLG---- 53
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
NG+ V I+ V +P DE TT+ A++ + +
Sbjct: 54 -NGTFSGEVKKI-------IEATVNIPVHEVDESYTTLEAEERYRQEHYTG 96
>gi|284049003|ref|YP_003399342.1| Resolvase RNase H domain protein fold protein [Acidaminococcus
fermentans DSM 20731]
gi|283953224|gb|ADB48027.1| Resolvase RNase H domain protein fold protein [Acidaminococcus
fermentans DSM 20731]
Length = 138
Score = 48.4 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 31/143 (21%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFIIGLP 76
+D G + G A LVR+ + T L +F+ E+ A ++G
Sbjct: 8 LGVDPGRDKTGAA-------LVAGDGTLVRQAILPTDHFTDHLRAFLAGESPAGCVLG-- 58
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI--- 133
+G+ +H + + +P DE +T A+++ + R +
Sbjct: 59 ---DGTTSTTMH------RQLEETFPRLPLFTVDEYGSTQEAKKLYWQLFPPRGWKRFLP 109
Query: 134 -------QKVDSIAAALILQEVL 149
VD +AAA++++ L
Sbjct: 110 QALLDAPSAVDGLAAAVLVRRYL 132
>gi|148238653|ref|YP_001224040.1| polynucleotidyl transferase [Synechococcus sp. WH 7803]
gi|147847192|emb|CAK22743.1| Polynucleotidyl transferase, Ribonuclease H fold superfamily
[Synechococcus sp. WH 7803]
Length = 145
Score = 48.4 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 35/148 (23%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN----IAAFII 73
IA++D G + GL + D V + A +L+ + + +I
Sbjct: 3 RIAALDPGRSKCGLVLVDLDLG-------RVLEGQVAPAESVLATLEQWRGVGPLERMVI 55
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNVSR 129
G NG+ H +P DER TT++A++ + R
Sbjct: 56 G-----NGTAS---------AHWRDQLPADLPLTVVDERGTTLAARRRYWELWPPQGWRR 101
Query: 130 KKRIQK------VDSIAAALILQEVLDR 151
+D++AA +IL+ L+R
Sbjct: 102 LLPEGLRIPPCDLDAVAALVILESALNR 129
>gi|254424331|ref|ZP_05038049.1| hypothetical protein S7335_4490 [Synechococcus sp. PCC 7335]
gi|196191820|gb|EDX86784.1| hypothetical protein S7335_4490 [Synechococcus sp. PCC 7335]
Length = 148
Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 25/146 (17%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G + G+A+ + H + V+ T L T I++ ++G
Sbjct: 15 TLLGFDPGRDKCGVAVVGLDKAL-HYHQVISSPNVSATIQNLR---ETYPISSIVMG--- 67
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--------VSR 129
+ ++ + + + V DER +++ A+ +M + R
Sbjct: 68 -------DQT-RSKQWKKQLGNLPNAPRIVLIDERYSSLEARDRYWEMYPPKGITKLLPR 119
Query: 130 KKRI--QKVDSIAAALILQEVLDRIS 153
R + +D I A L+++ L+R+S
Sbjct: 120 SLRSIPRPIDDIVAILLVERYLNRLS 145
>gi|86605919|ref|YP_474682.1| hypothetical protein CYA_1236 [Synechococcus sp. JA-3-3Ab]
gi|86554461|gb|ABC99419.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
Length = 138
Score = 48.0 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 19/106 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRK--KVTQTALELLSFITTENIAAFIIGL 75
+ D G + GLA+ P L R+ + L + I+G
Sbjct: 2 LMGFDPGRDKCGLAV-----VQVQPAWQVLHREVVSAGEALARLQALWQQFGAERLILG- 55
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ R + + V DER ++ A++
Sbjct: 56 ----------NQTTARGWKRQLESLLPPQQIVLVDERHSSEEARRR 91
>gi|330839723|ref|YP_004414303.1| Resolvase RNase H domain fold protein [Selenomonas sputigena ATCC
35185]
gi|329747487|gb|AEC00844.1| Resolvase RNase H domain fold protein [Selenomonas sputigena ATCC
35185]
Length = 139
Score = 48.0 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 31/148 (20%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFII 73
+ +A++D G ++ G A+ D ++ +KV +T LE+ + ++
Sbjct: 4 ETLAAVDPGREKCGFAVLDVHG-------TVLFQKVIETLKLGLEINDKCSRYAFTTLVL 56
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G NG+ + + + V DE TT A++ R
Sbjct: 57 G-----NGTTSREAKK------RIEEAVPDLRVVLVDEYRTTDMAKRAYWQARPPHGWRR 105
Query: 134 ----------QKVDSIAAALILQEVLDR 151
+ VD A ++ + L++
Sbjct: 106 LLPVSMLVPPEPVDDFVAVILARRFLEK 133
>gi|304437497|ref|ZP_07397455.1| resolvase, RNase H domain protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304369547|gb|EFM23214.1| resolvase, RNase H domain protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 132
Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 32/150 (21%)
Query: 16 NQPIASIDLGTKRIGLAI--SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ + ++D G ++ G+A+ +D + ++T TA+ L+ I+
Sbjct: 2 SGAVLAVDPGREKCGVAVLAADGTVLLQ---EVVPTTQLTATAVRLIHT----YAPTVIM 54
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G NG+ + RA + + DE TT +A+ + R R
Sbjct: 55 G-----NGTTS---AAARARIEEL-----GTEVTLVDEYRTTDAAKAAYWTAHPPRGWRR 101
Query: 134 QK----------VDSIAAALILQEVLDRIS 153
VD A ++ Q L +S
Sbjct: 102 LMPRGMLVPPVPVDDFVAVILAQRYLTEVS 131
>gi|260886294|ref|ZP_05897557.1| conserved hypothetical protein [Selenomonas sputigena ATCC 35185]
gi|260864013|gb|EEX78513.1| conserved hypothetical protein [Selenomonas sputigena ATCC 35185]
Length = 140
Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 31/148 (20%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFII 73
+ +A++D G ++ G A+ D ++ +KV +T LE+ + ++
Sbjct: 5 ETLAAVDPGREKCGFAVLDVHG-------TVLFQKVIETLKLGLEINDKCSRYAFTTLVL 57
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G NG+ + + + V DE TT A++ R
Sbjct: 58 G-----NGTTSREAKK------RIEEAVPDLRVVLVDEYRTTDMAKRAYWQARPPHGWRR 106
Query: 134 ----------QKVDSIAAALILQEVLDR 151
+ VD A ++ + L++
Sbjct: 107 LLPVSMLVPPEPVDDFVAVILARRFLEK 134
>gi|158337164|ref|YP_001518339.1| hypothetical protein AM1_4040 [Acaryochloris marina MBIC11017]
gi|158307405|gb|ABW29022.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 153
Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 26/144 (18%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G ++ GLA+ + H +V +Q + + I+ ++G
Sbjct: 16 ILGFDPGRQKCGLAVMGIDQTI-HWHQVVVA---SQVIDSINALCEIYPISLLVMG---- 67
Query: 79 MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILID----MNVSR---- 129
N + + ++ + ++ + + V DER +T+ A+ + R
Sbjct: 68 -NQTTS------KEWLQVLNEKYALNLDIVQVDERNSTLEARSRYWQIYPPQGIHRFIPQ 120
Query: 130 --KKRIQKVDSIAAALILQEVLDR 151
+K +D I A L+++ L++
Sbjct: 121 SLRKINHPIDDIVAILLIERYLEK 144
>gi|86609221|ref|YP_477983.1| hypothetical protein CYB_1763 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557763|gb|ABD02720.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 154
Score = 47.2 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 15/113 (13%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENI 68
LK + + D G + G+A+ L R+ V A L +
Sbjct: 8 ARLKSERVLIGFDPGRDKCGIAVVQV--FTQTELKVLHREVVPSAAALSRLQTLRQQFQA 65
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
I+G + +A+ + V DER ++ A+Q
Sbjct: 66 EQVILG-----------NQTTAQAWKSQLESILPPQQIVLVDERHSSQEARQR 107
>gi|323448090|gb|EGB03993.1| hypothetical protein AURANDRAFT_67554 [Aureococcus anophagefferens]
Length = 548
Score = 47.2 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
+P +D G +R G+ + + P + +T A +++ E AF++GL
Sbjct: 474 EPTLGVDFGLRRTGVCVG--RGYASRPLEVVENCGNLTAHAAAIVALALREGATAFVVGL 531
Query: 76 PLNMNGSEGPRV 87
PL+ +GSE +
Sbjct: 532 PLDRDGSETEQS 543
>gi|113954115|ref|YP_729548.1| hypothetical protein sync_0314 [Synechococcus sp. CC9311]
gi|113881466|gb|ABI46424.1| conserved hypothetical protein [Synechococcus sp. CC9311]
Length = 150
Score = 47.2 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 40/153 (26%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE---------NI 68
+ ++D G + GL A+ V K + + E+L + I
Sbjct: 3 RVVALDPGRSKCGL-------LLANISTNTVLKAMVIPSAEVLDQLRAWMEDDQGENAQI 55
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI----D 124
A +IG +G+ + DE TT+ A++
Sbjct: 56 ADLVIG-----DGTSSTIWQQ---------QLPTSLKVHVVDETGTTLRARERYWQLWPA 101
Query: 125 MNVSR------KKRIQKVDSIAAALILQEVLDR 151
R + +D+IAA +IL++ LDR
Sbjct: 102 RGWKRLLPLGLRIPSGDLDAIAALVILEDYLDR 134
>gi|186685566|ref|YP_001868762.1| resolvase domain-containing protein [Nostoc punctiforme PCC 73102]
gi|186468018|gb|ACC83819.1| Resolvase, RNase H domain protein fold protein [Nostoc punctiforme
PCC 73102]
Length = 151
Score = 47.2 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 31/156 (19%)
Query: 11 KSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ P QP I D G + GLA+ R+ + ++ K+ T L I+
Sbjct: 4 REFSPTQPVILGFDPGRDKCGLAVMGLDRQL-YYHQVVLAKEAIATIETLRQ---KFPIS 59
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQI------- 121
++G + + + + + + + DER TT+ A+
Sbjct: 60 LMVMG----------DQT-TAKQWREKLYQELTEPLSIILVDERYTTLEARDRYWQMFPP 108
Query: 122 -----LIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
L+ + + R +D I A L+++ L+R+
Sbjct: 109 KGLTKLLPQGLRQPPR--PIDDIVAILLIERYLNRL 142
>gi|300867463|ref|ZP_07112117.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300334578|emb|CBN57285.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 132
Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 37/148 (25%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK----VTQTALELLSFITTENIAAFIIG 74
I D G + G+A+ VR + S + I ++G
Sbjct: 2 ILGFDPGRDKCGIAV--------MGLDREVRYHQVVLAENAIATIESLCSQFPIELIVMG 53
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ------------IL 122
+ + R++ + V V DER +++ A+ L
Sbjct: 54 -----DQTTS------RSWKQKISASLPLVEVVQVDERYSSLEARDRFWEMFPPKGFNRL 102
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150
I + R VD I A ++++ L+
Sbjct: 103 IPQGMRTPPR--PVDDIVAIVLIERYLN 128
>gi|254416125|ref|ZP_05029880.1| hypothetical protein MC7420_7547 [Microcoleus chthonoplastes PCC
7420]
gi|196177058|gb|EDX72067.1| hypothetical protein MC7420_7547 [Microcoleus chthonoplastes PCC
7420]
Length = 127
Score = 46.1 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 30/142 (21%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + GLA+ + + Q + I ++G
Sbjct: 2 ILGFDPGRDKCGLAVKGKDQEI-SYHQVIP---SDQAIATIKRLSQQFPIETIVMG---- 53
Query: 79 MNGSEGPRVH-STRAFVHNMIDRKVYVPFVFWDERLTTVSAQ------------QILIDM 125
N + + R + +P V DER +T+ A+ Q LI
Sbjct: 54 -NQTTSKQWQGKIREVIS------APIPIVLVDERYSTLEARDRYWQMYPPKGLQRLIPQ 106
Query: 126 NVSRKKRIQKVDSIAAALILQE 147
+ + R +D I A L+++
Sbjct: 107 GMRQPPR--PIDDIVAILLIER 126
>gi|33239731|ref|NP_874673.1| hypothetical protein Pro0279 [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237256|gb|AAP99325.1| Predicted endonuclease [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 145
Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + SID G K+ G+ ++D F ++ V + + + I IIG
Sbjct: 1 MRKVISIDPGHKKCGILLADVEGLFVIDGKTVINSSVIKL---IEDWREKYIIDLIIIG- 56
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
NG+ R + ID ++ P DER+TT+ A+ ++
Sbjct: 57 ----NGTTS------RYWQGKFIDNEIG-PIELVDERMTTLLARSRYLE 94
>gi|312142812|ref|YP_003994258.1| Resolvase RNase H domain protein fold protein [Halanaerobium sp.
'sapolanicus']
gi|311903463|gb|ADQ13904.1| Resolvase RNase H domain protein fold protein [Halanaerobium sp.
'sapolanicus']
Length = 139
Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 44/154 (28%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---------VTQTALELLSFITTENIA 69
+ S+D G +IG A+ + R K +T+ L I
Sbjct: 5 LLSLDPGRNKIGTAV-------------ISRDKEEREKTIVSLTEFEDHLNEIFDKYQIN 51
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVS 128
I+G NG+ ++ + V DE+ +T AQ + L + +S
Sbjct: 52 EIIVG-----NGTGAEKIIKKIEKLKINKKITV------VDEKFSTEEAQARYLREKPMS 100
Query: 129 RKKR----------IQKVDSIAAALILQEVLDRI 152
R ++ + +D AA +I ++ L+++
Sbjct: 101 RYEKLLRKFISWKVKKPLDDYAALIIAEKYLEKL 134
>gi|302392906|ref|YP_003828726.1| Resolvase RNase H domain protein fold protein [Acetohalobium
arabaticum DSM 5501]
gi|302204983|gb|ADL13661.1| Resolvase RNase H domain protein fold protein [Acetohalobium
arabaticum DSM 5501]
Length = 127
Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 33/144 (22%)
Query: 19 IASIDLGTKRIGLAIS-DPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ID G + GLA+ D + + I + +IG
Sbjct: 2 ILGIDPGRDKCGLALMIDKEEI-----EICEVVATDRILDRIEELIAEYRVNKIVIG--- 53
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRK--VYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
+G+ ++DR DE +T+ A+++ N R
Sbjct: 54 --DGTSSS----------ELLDRLDSDGFEIHQVDETNSTLEARKLYWQSNPPSSWRRLV 101
Query: 134 --------QKVDSIAAALILQEVL 149
+ VD A ++++ L
Sbjct: 102 PTSFQTPPEAVDGYVAVILIRRYL 125
>gi|139439282|ref|ZP_01772724.1| Hypothetical protein COLAER_01740 [Collinsella aerofaciens ATCC
25986]
gi|133775306|gb|EBA39126.1| Hypothetical protein COLAER_01740 [Collinsella aerofaciens ATCC
25986]
Length = 442
Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 14/127 (11%)
Query: 5 LIEDLVKSLK-PNQPIASIDLGTKRIG--LAISDPGR-RFAHPR--PFLVRKKVTQTALE 58
+E L+ + + ++D G R G +A+ D H P R V T E
Sbjct: 28 NLEGLLSARPVRGARVLALDPG-YRTGCKVAVMDETGKLLDHGVVYPTKPRHDVAGTKRE 86
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
L + + + +IG NG+ + ++ + + +E +V +
Sbjct: 87 LARLVKKDGVNTIVIG-----NGTASRETEEV--VSEFIAEQAPSLRYTIVNEAGASVYS 139
Query: 119 QQILIDM 125
L
Sbjct: 140 ASELASQ 146
>gi|88808007|ref|ZP_01123518.1| hypothetical protein WH7805_07591 [Synechococcus sp. WH 7805]
gi|88788046|gb|EAR19202.1| hypothetical protein WH7805_07591 [Synechococcus sp. WH 7805]
Length = 145
Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 27/143 (18%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
IA++D G + GL + D L V +T + S E + ++G
Sbjct: 3 RIAALDPGRSKCGLLLVDTDLGIVLEGHVLEGCSVLETLEQWRS---KEPLDRVVMG--- 56
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
NG+ ++R + + + DER TT+ A+ ++ + R
Sbjct: 57 --NGT------ASRHWRDQL---PADLQLTVVDERGTTLQARSRYWELWPPKGWRRLLPE 105
Query: 136 --------VDSIAAALILQEVLD 150
+D++AA +IL+ L+
Sbjct: 106 GLRIPPCDLDAVAALVILETALN 128
>gi|241166280|ref|XP_002409833.1| protein tex, putative [Ixodes scapularis]
gi|215494654|gb|EEC04295.1| protein tex, putative [Ixodes scapularis]
Length = 616
Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 15/111 (13%)
Query: 5 LIEDLVKSLKP-NQPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + N+ + +D G R G+ A+ D + A PF R+
Sbjct: 53 NLRDLLLAAPAGNKAVLGLDPGI-RTGVKAAVIDATGKVLDTATVYPFEPRRDREGAIRT 111
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
L T + IG NG+ T V ++ +P
Sbjct: 112 LAGLATRYQVELVAIG-----NGTAS---RETEKLVADLQSAFPRLPLTRV 154
>gi|117924758|ref|YP_865375.1| RNA-binding S1 domain-containing protein [Magnetococcus sp. MC-1]
gi|117608514|gb|ABK43969.1| RNA binding S1 domain protein [Magnetococcus sp. MC-1]
Length = 773
Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 46/137 (33%), Gaps = 22/137 (16%)
Query: 5 LIEDLVKSLKPNQ-PIASIDLGTKRIG--LAISDPGR---RFAHPRPFLVRKKVTQTALE 58
++DL+ S P+ +D G R G +A+ D A P R +
Sbjct: 313 NLKDLLLSAPAGMVPVMGLDPGL-RTGVKVAVVDATGQVQTTATIYPHQPRNDWEGSIKA 371
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF--VFWDERLTTV 116
L I + IG NG+ T V + R + V E +V
Sbjct: 372 LSLLIKKYKVPLIAIG-----NGTAS---RETDRLVAELNRRHPDLKVTAVVVSEAGASV 423
Query: 117 -----SAQQILIDMNVS 128
A Q L +M+VS
Sbjct: 424 YSASAYASQELPEMDVS 440
>gi|87301940|ref|ZP_01084774.1| hypothetical protein WH5701_01405 [Synechococcus sp. WH 5701]
gi|87283508|gb|EAQ75463.1| hypothetical protein WH5701_01405 [Synechococcus sp. WH 5701]
Length = 154
Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 27/147 (18%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L +A +D G + GL +D GR LV Q L ++ + A I
Sbjct: 9 LPSQGALAGLDPGRSKCGLVRTDRGR--QQLLEALVI-PPEQAWGRLEGWLLQGEVQAVI 65
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G NG+ + P + +E +T++A+ ++N +R R
Sbjct: 66 LG-----NGTGSASWRR---------RLEPLAPVLLVEEHGSTLAARARFFELNPTRGWR 111
Query: 133 I----------QKVDSIAAALILQEVL 149
+ D + A L+L+ +L
Sbjct: 112 RLLPQGLRQPPRDWDDVVAQLLLERLL 138
>gi|149183142|ref|ZP_01861591.1| hypothetical protein BSG1_20980 [Bacillus sp. SG-1]
gi|148849125|gb|EDL63326.1| hypothetical protein BSG1_20980 [Bacillus sp. SG-1]
Length = 24
Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
KKR + +D +AAA ILQ LD
Sbjct: 1 KKRKKVIDKMAAAFILQGYLDS 22
>gi|307154188|ref|YP_003889572.1| Resolvase RNase H domain-containing protein fold protein
[Cyanothece sp. PCC 7822]
gi|306984416|gb|ADN16297.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
7822]
Length = 132
Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 50/143 (34%), Gaps = 24/143 (16%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + G+AI R+ + + + + + I ++G
Sbjct: 2 ILGFDPGRDKCGVAIMGNDRQI-YYHEVV---ESDGAISVINTLFQQYPIELLVMG---- 53
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
+ + + + +P V DER +++ A+ +M + +
Sbjct: 54 --NQTTSKTWKAK-LETELAE---SIPIVMVDERNSSLEARDRYWEMYPPKGLQWFIPQG 107
Query: 134 -----QKVDSIAAALILQEVLDR 151
+ +D + A L+++ L++
Sbjct: 108 MRLPPRPIDDLVAILLIERYLNK 130
>gi|297185088|gb|ADI21197.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09]
Length = 48
Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 108 FWDERLTTVSAQQILI---DMNVSRKKRIQKVDSIAAALILQEVL 149
DE ++ A ++LI + + K + + VD+ AA LI + L
Sbjct: 1 MIDESYSSKEANEMLILERRLGLRGKIKKEMVDAAAATLIAERWL 45
>gi|242054501|ref|XP_002456396.1| hypothetical protein SORBIDRAFT_03g035490 [Sorghum bicolor]
gi|241928371|gb|EES01516.1| hypothetical protein SORBIDRAFT_03g035490 [Sorghum bicolor]
Length = 51
Score = 44.2 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 1 MSILLIEDLVKSL------KPNQPIASIDLGTKRIGLAISDPGRRFAHPR 44
M +L E+L + + + +D+G+K +G+++SD R A P
Sbjct: 1 MRLLQAEELFRKVLEVGSKNKATRLLGLDVGSKYVGVSVSDEKNRIALPL 50
>gi|75909488|ref|YP_323784.1| resolvase, RNase H-like protein fold [Anabaena variabilis ATCC
29413]
gi|75703213|gb|ABA22889.1| Resolvase, RNase H-like fold protein [Anabaena variabilis ATCC
29413]
Length = 149
Score = 43.8 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 35/164 (21%)
Query: 3 ILLIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
++ + + P QP I D G + GLA+ R+ + + L
Sbjct: 1 MMNLSEF----SPTQPVILGFDPGKDKCGLAVMGLDRQL-YYHQVVAAADAIAIINTLRQ 55
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQ 120
I+ ++G + + + + + V DER +T+ A+
Sbjct: 56 ---QFPISMLVMG-----------NQTTAKRWKQQLQQELAEALNIVLVDERYSTLEARD 101
Query: 121 I------------LIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
L+ + + R +D I A L+++ L R+
Sbjct: 102 RYWQMYPPQGLIKLLPHGMRQPPR--PIDDIVAILLIERYLSRL 143
>gi|33597728|ref|NP_885371.1| transcription accessory protein [Bordetella parapertussis 12822]
gi|33574156|emb|CAE38486.1| transcription accessory protein [Bordetella parapertussis]
Length = 791
Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 15/106 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + + +D G R G +A+ D + A PF R+ T
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
L + + IG NG+ + V +M+ R +
Sbjct: 390 LAALAARHKVELIAIG-----NGTAS---RESEKLVGDMMARFPDL 427
>gi|1477402|emb|CAA64672.1| tex [Bordetella pertussis Tohama I]
Length = 791
Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 15/106 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + + +D G R G +A+ D + A PF R+ T
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
L + + IG NG+ + V +M+ R +
Sbjct: 390 LAALAARHKVELIAIG-----NGTAS---RESEKLVGDMMARFPDL 427
>gi|33602576|ref|NP_890136.1| transcription accessory protein [Bordetella bronchiseptica RB50]
gi|33577015|emb|CAE34095.1| transcription accessory protein [Bordetella bronchiseptica RB50]
Length = 791
Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 15/106 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + + +D G R G +A+ D + A PF R+ T
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
L + + IG NG+ + V +M+ R +
Sbjct: 390 LAALAARHKVELIAIG-----NGTAS---RESEKLVGDMMARFPDL 427
>gi|33592276|ref|NP_879920.1| transcription accessory protein [Bordetella pertussis Tohama I]
gi|34978385|sp|Q45388|TEX_BORPE RecName: Full=Protein tex
gi|33571921|emb|CAE41441.1| transcription accessory protein [Bordetella pertussis Tohama I]
gi|332381693|gb|AEE66540.1| transcription accessory protein [Bordetella pertussis CS]
Length = 791
Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 15/106 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + + +D G R G +A+ D + A PF R+ T
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
L + + IG NG+ + V +M+ R +
Sbjct: 390 LAALAARHKVELIAIG-----NGTAS---RESEKLVGDMMARFPDL 427
>gi|297379556|gb|ADI34443.1| Hypothetical protein HPV225_0354 [Helicobacter pylori v225d]
Length = 81
Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 88 HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQKVDSIAAALI 144
F+ + VF +E +++ A + L + K+ + ++DS++A I
Sbjct: 13 ARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRI 69
Query: 145 LQEV 148
L+
Sbjct: 70 LERY 73
>gi|284053053|ref|ZP_06383263.1| hypothetical protein AplaP_16418 [Arthrospira platensis str.
Paraca]
gi|291566867|dbj|BAI89139.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 132
Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 28/142 (19%)
Query: 19 IASIDLGTKRIGLA-ISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I D G + G+A + D + + S + ++ ++G
Sbjct: 3 ILGFDPGRDKCGVAVVGDN-----QQVYYHQVVAANDAIATVESLCSQFSVQLVVMG--- 54
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDM----NVSRKKR 132
N + R + M + V DER +++ A+ +M +SR
Sbjct: 55 --NQTTS------RTWKQQMRAVLPESIQIVEVDERYSSLQARDRYWEMYPPQGLSRLLP 106
Query: 133 IQK------VDSIAAALILQEV 148
+D I A ++++
Sbjct: 107 QGMRVPPRPIDDIVAIILVERY 128
>gi|296274213|ref|YP_003656844.1| Tex-like protein [Arcobacter nitrofigilis DSM 7299]
gi|296098387|gb|ADG94337.1| Tex-like protein [Arcobacter nitrofigilis DSM 7299]
Length = 702
Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 12/87 (13%)
Query: 16 NQPIASIDLGTKRIG--LAI-SDPGRRF--AHPRPFLVRKKVTQTALELLSFITTENIAA 70
NQ I ID G R G +A+ SD G A P ++ +A LL+ I + +
Sbjct: 314 NQTILGIDPGF-RTGCKVAVISDDGLFLDSAVIYPTKPKEDFANSAKTLLALIKKHKVNS 372
Query: 71 FIIGLPLNMNGSEG-PRVHSTRAFVHN 96
IG NG+ F+
Sbjct: 373 IAIG-----NGTASNETASFVSNFIKE 394
>gi|313894648|ref|ZP_07828211.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str.
F0412]
gi|313440838|gb|EFR59267.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str.
F0412]
Length = 175
Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 30/140 (21%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G ++ G+AI P R + K LL+ I + G
Sbjct: 7 ILAVDPGNEKTGVAIVTPDGSMV-CRNIISTKTFNDDIERLLT--EYYGIVHIVCG---- 59
Query: 79 MNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133
NG+ P + R + DE +T A+++ N R
Sbjct: 60 -NGTNHKYLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWKYNPPTGWRKF 110
Query: 134 ---------QKVDSIAAALI 144
+ VD + A +I
Sbjct: 111 LPTSMQFPPEPVDDLTALVI 130
>gi|144575166|gb|AAZ43956.2| conserved hypothetical protein [Mycoplasma synoviae 53]
Length = 705
Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 26/150 (17%)
Query: 16 NQPIASIDLGTKRIGL---AISDPG--RRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
I +ID G G A+S+ G A P R V+Q ++L I NI
Sbjct: 313 GHNILAIDPGYVS-GCKLAALSEKGSVLEIATIYPNEPRSNVSQAKTKVLELIKKHNITI 371
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF--WDERLTTV-SAQQILIDM-- 125
+IG NG+ T F++N+I F E +V SA +I I+
Sbjct: 372 IVIG-----NGTAS---RETEQFINNLIQENNLDNIYFCIVSEAGASVYSASEIAIEEFP 423
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
N+S +KR +A I ++ LD ++ L
Sbjct: 424 NLSVEKR-------SAINIGRKFLDPLNEL 446
>gi|71894559|ref|YP_278667.1| hypothetical protein MS53_0548 [Mycoplasma synoviae 53]
Length = 698
Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 26/150 (17%)
Query: 16 NQPIASIDLGTKRIGL---AISDPG--RRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
I +ID G G A+S+ G A P R V+Q ++L I NI
Sbjct: 306 GHNILAIDPGYVS-GCKLAALSEKGSVLEIATIYPNEPRSNVSQAKTKVLELIKKHNITI 364
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF--WDERLTTV-SAQQILIDM-- 125
+IG NG+ T F++N+I F E +V SA +I I+
Sbjct: 365 IVIG-----NGTAS---RETEQFINNLIQENNLDNIYFCIVSEAGASVYSASEIAIEEFP 416
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
N+S +KR +A I ++ LD ++ L
Sbjct: 417 NLSVEKR-------SAINIGRKFLDPLNEL 439
>gi|56751384|ref|YP_172085.1| hypothetical protein syc1375_c [Synechococcus elongatus PCC 6301]
gi|81298940|ref|YP_399148.1| resolvase, RNase H-like fold [Synechococcus elongatus PCC 7942]
gi|56686343|dbj|BAD79565.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81167821|gb|ABB56161.1| Resolvase, RNase H-like fold [Synechococcus elongatus PCC 7942]
Length = 143
Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 28/141 (19%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGLPL 77
D G + GLA+ A L + + L + ++G
Sbjct: 9 IGFDPGRDKCGLAL-----MEAQTGQILEHRILASAEAIAVLAQLFQARSPQLLVLG--- 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---- 133
N + + + + P DER +T+ A+ M R R
Sbjct: 61 --NQTTSQQWQA------QLSALPSAPPIALVDERNSTLEARDRYWQMYPVRGWRRLLPQ 112
Query: 134 ------QKVDSIAAALILQEV 148
+ VD + A L+L+
Sbjct: 113 GLRQPPRPVDDLVAILLLERY 133
>gi|315929041|gb|EFV08280.1| holliday junction resolvase-like domain protein [Campylobacter
jejuni subsp. jejuni 305]
Length = 63
Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
E + FV + + F DE T+ A L + +K+ K+DS++A
Sbjct: 1 EEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSLSAF 54
Query: 143 LILQEVL 149
+++++
Sbjct: 55 IMIKDYF 61
>gi|292669941|ref|ZP_06603367.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292648412|gb|EFF66384.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 143
Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 30/145 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIG 74
+ P+ +ID G ++ G+A+ A + + T + I A ++G
Sbjct: 2 SGPVLAIDPGREKCGVAV-----LSAGGAILVRKVVATADLGSCVGGLIAAHEPA-VVMG 55
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
NG+ + + V DE TT A+++ D++ R R
Sbjct: 56 -----NGTTSAEAKT--------RVECLGVTVTLADEYRTTDEAKRLYWDVHPPRGWRRF 102
Query: 135 K----------VDSIAAALILQEVL 149
VD A ++ + L
Sbjct: 103 VPRGMLVPPVPVDDFVAVILARRFL 127
>gi|113475680|ref|YP_721741.1| resolvase, RNase H-like fold [Trichodesmium erythraeum IMS101]
gi|15420712|gb|AAK97425.1|AF382392_1 unknown [Trichodesmium erythraeum IMS101]
gi|110166728|gb|ABG51268.1| Resolvase, RNase H-like fold [Trichodesmium erythraeum IMS101]
Length = 133
Score = 42.2 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 30/145 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + G+AI D R+ H + K+T + + +I IIG
Sbjct: 2 ILGFDPGRDKCGIAIMDKNRQL-HYNQVVDSAKIT---ITITKLSQQFDINLIIIG---- 53
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQ------------ILIDM 125
+ + N+ + +P + DER +++ A+ LI
Sbjct: 54 -DQTTSKIWQQ------NLTEIISEKIPIIKIDERYSSLEARDRYWQINPPQGFVRLIPP 106
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
+ + + +D I A ++++ L+
Sbjct: 107 GM--RIPPKPIDDIVAIILIERYLN 129
>gi|223996479|ref|XP_002287913.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977029|gb|EED95356.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 242
Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 19/109 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVT-----------QTALELLSFITT 65
+ +D+ +RIG+A+S+ + F+ P ++ + ++ LEL + +
Sbjct: 29 VMGLDITRERIGIAVSEHPKHFSEPLALNSILLQDRDSSSNRSKGIAKESLLELEAAVRK 88
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV-----PFVFW 109
++ AF++ PLN G G + + +++D+ V PF W
Sbjct: 89 HHVCAFVVNWPLN-EGRMGEQCGKVLQVLDSVMDQSNSVVTRKRPFTLW 136
>gi|320530393|ref|ZP_08031452.1| hypothetical protein HMPREF9555_01556 [Selenomonas artemidis F0399]
gi|320137357|gb|EFW29280.1| hypothetical protein HMPREF9555_01556 [Selenomonas artemidis F0399]
Length = 133
Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 28/144 (19%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G + G+A+ L T +S + E I+G
Sbjct: 1 MSTVLAIDPGRDKCGIAV-----LSPQGDILLHEIVPTGALETRVSELAAEYAPRIIMG- 54
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+G+ + I+ +V DE TT +++ N R R
Sbjct: 55 ----DGTTSAATKA-------RIEAQVGA-VTLVDEYRTTEEGRRLYWAENPPRGWRRLV 102
Query: 136 ----------VDSIAAALILQEVL 149
VD AA + + L
Sbjct: 103 PRGLLTPTVPVDDFAAVALARRFL 126
>gi|294793347|ref|ZP_06758492.1| conserved hypothetical protein [Veillonella sp. 6_1_27]
gi|294455778|gb|EFG24143.1| conserved hypothetical protein [Veillonella sp. 6_1_27]
Length = 175
Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 30/140 (21%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G ++ G+AI P R + + +L+ I + G
Sbjct: 7 ILAVDPGNEKTGVAILSPSGEM-ICRKIISSNTFNKDIERILT--EYYGIVHIVCG---- 59
Query: 79 MNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133
NG+ P + R + DE +T A+++ N R
Sbjct: 60 -NGTNHKHLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWQYNPPTGWRKI 110
Query: 134 ---------QKVDSIAAALI 144
+ VD + A +I
Sbjct: 111 IPTSMQFPPEPVDDLTALVI 130
>gi|269797615|ref|YP_003311515.1| hypothetical protein Vpar_0552 [Veillonella parvula DSM 2008]
gi|269094244|gb|ACZ24235.1| hypothetical protein Vpar_0552 [Veillonella parvula DSM 2008]
Length = 175
Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 30/140 (21%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G ++ G+AI P R + + +L+ I + G
Sbjct: 7 ILAVDPGNEKTGVAILSPSGEM-ICRKIISSNTFNKDIERILT--EYYGIVHIVCG---- 59
Query: 79 MNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133
NG+ P + R + DE +T A+++ N R
Sbjct: 60 -NGTNHKHLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWQYNPPTGWRKI 110
Query: 134 ---------QKVDSIAAALI 144
+ VD + A +I
Sbjct: 111 IPTSMQFPPEPVDDLTALVI 130
>gi|52549635|gb|AAU83484.1| conserved hypothetical protein [uncultured archaeon GZfos28G7]
Length = 431
Score = 41.9 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 19/125 (15%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID GT IG+AI D +P K + +++ I + +
Sbjct: 13 IVGIDPGT-TIGVAIIDLEG---NPIEVFSSKNYS--CSDVIERIISRGNPLIV-----A 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ + P I R P DE L+T + L K + + D+
Sbjct: 62 SDVTPTPSTVK-------RISRIFSSPVHELDESLSTEE-KIALTKGEGYEYKNVHERDA 113
Query: 139 IAAAL 143
+AA +
Sbjct: 114 LAACV 118
>gi|260881399|ref|ZP_05404313.2| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
gi|260848853|gb|EEX68860.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
Length = 137
Score = 41.9 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 31/142 (21%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA---LELLSFITTENIAAFI 72
+ IA++D G ++ G A+ + ++ ++V +TA E+ + A +
Sbjct: 3 MERIAALDPGREKCGFAVLREDGK-------VLMQRVIETAQLEQEVRAAREEHGFAVLV 55
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
G NG+ + + + DE TT A++ R R
Sbjct: 56 EG-----NGTTSREARA------RLQKALPDLCIEVVDEYRTTDLAKKAYWKAKPPRGWR 104
Query: 133 I----------QKVDSIAAALI 144
+ VD A ++
Sbjct: 105 RLLPVTMQVPPEPVDDFVAVIL 126
>gi|313895762|ref|ZP_07829317.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975591|gb|EFR41051.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 133
Score = 41.5 bits (97), Expect = 0.040, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 28/137 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G + G+A+ L T +S + E I+G
Sbjct: 1 MSTVLAIDPGRDKCGIAV-----LSPQGDVLLHEIVPTAALETRVSELAAEYAPRIIMG- 54
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+G+ + I+ + + DE TT +++ N R R
Sbjct: 55 ----DGTTSAAAKA-------RIEAQAGA-VILVDEYRTTEEGRRLYWAENPPRGWRRLV 102
Query: 136 ----------VDSIAAA 142
VD AA
Sbjct: 103 PRGLLTPAVPVDDFAAV 119
>gi|217076628|ref|YP_002334344.1| S1 RNA binding domain protein [Thermosipho africanus TCF52B]
gi|217036481|gb|ACJ75003.1| S1 RNA binding domain protein [Thermosipho africanus TCF52B]
Length = 675
Score = 41.1 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 15/108 (13%)
Query: 15 PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69
++ I +ID G K G +A+ D +F A P + + ++ I ++
Sbjct: 299 KDKRILAIDPGNKT-GCKIAVLDENGKFLEKAIIFPTPPHNDIENSEKIVIELIKKFDLN 357
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTV 116
+IG NG+ T+ F+ N I + + V ++F +E +V
Sbjct: 358 LIVIG-----NGTAS---RETQKFIVNTIKKFNLDVKYIFANEAGASV 397
>gi|261885965|ref|ZP_06010004.1| Holliday junction resolvase-like protein [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 58
Score = 41.1 bits (96), Expect = 0.047, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 102 VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
++ DE ++ A + +S+ + + DSIAA +IL+ L+
Sbjct: 14 FDSEIIYVDEAYSSCEASE------LSKDSKDGRFDSIAAMVILKRYLN 56
>gi|87125088|ref|ZP_01080935.1| Resolvase, RNase H-like fold [Synechococcus sp. RS9917]
gi|86167408|gb|EAQ68668.1| Resolvase, RNase H-like fold [Synechococcus sp. RS9917]
Length = 143
Score = 41.1 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 37/147 (25%)
Query: 18 PIASIDLGTKRIGLAISDPGR-----RFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ +ID G + GL + + R P ++ + E I+ +
Sbjct: 3 RLLAIDPGRSKCGLVLCELNRHRVIEGLVLPVE--------DVLHQIQRWSDEEPISTVV 54
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G NG+ + + + +P +ER TT+ A+ + R R
Sbjct: 55 LG-----NGTGSA------DWEQRL---RPLLPVELVEERGTTLRARARYWTLRPPRGWR 100
Query: 133 IQK----------VDSIAAALILQEVL 149
+D+ AA ++L++
Sbjct: 101 RLLPEGLRLPPLDLDAFAALVMLEDHF 127
>gi|262273561|ref|ZP_06051375.1| transcription accessory protein [Grimontia hollisae CIP 101886]
gi|262222539|gb|EEY73850.1| transcription accessory protein [Grimontia hollisae CIP 101886]
Length = 775
Score = 41.1 bits (96), Expect = 0.050, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 16/128 (12%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + ID G R G +A+ D + A P + K+ ++A
Sbjct: 313 NLKDLLMAAPAGPRCTLGIDPGL-RTGCKVAVVDATGKLLDTATIYPTPPQNKIAESARV 371
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVS 117
+++ I + IG NG+ T AFV M+ + V E +V
Sbjct: 372 VMALIKKHKVDLIAIG-----NGTAS---RETDAFVAAMLKDAGEKIQTVMVSEAGASVY 423
Query: 118 AQQILIDM 125
+ L
Sbjct: 424 SASELAAA 431
>gi|20095000|ref|NP_614847.1| translation initiation factor 2, GTPase [Methanopyrus kandleri
AV19]
gi|19888260|gb|AAM02777.1| Translation initiation factor 2, GTPase [Methanopyrus kandleri
AV19]
Length = 744
Score = 41.1 bits (96), Expect = 0.053, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 39/145 (26%), Gaps = 23/145 (15%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAI------SDPGRRFAHPRPFLVRKKVTQTALELLS- 61
L+ S PI S+D G G+A D R + L
Sbjct: 487 LLSSAGAGGPILSVDPGEVNFGIAYIPRRGPCDVTSVKLTGHT---RDAKVEELRRTLKM 543
Query: 62 -FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
E +G NG V + D V DER TT A
Sbjct: 544 FLADREEPNLVYVG-----NGPGHDVA------VEALGDVLPEAEIVLVDERETTKEAVY 592
Query: 121 ILIDMNVSRKKRIQKVDS-IAAALI 144
L + + D +AA I
Sbjct: 593 RLSSGKLENVRSRDLRDHGVAALAI 617
>gi|168213729|ref|ZP_02639354.1| RNA-binding protein [Clostridium perfringens CPE str. F4969]
gi|170714808|gb|EDT26990.1| RNA-binding protein [Clostridium perfringens CPE str. F4969]
Length = 720
Score = 41.1 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
L+++ + + D G R G +AI D +F P + ++ +T L I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
+ +G NG+ A + I + +
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKEETGKELFYV 404
>gi|22298193|ref|NP_681440.1| hypothetical protein tlr0651 [Thermosynechococcus elongatus BP-1]
gi|22294372|dbj|BAC08202.1| tlr0651 [Thermosynechococcus elongatus BP-1]
Length = 143
Score = 41.1 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 35/153 (22%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTEN 67
+ ++ + D G + GLA A + + + + + +
Sbjct: 1 MMAMGRTKYFLGFDPGQDKCGLA-------LALGQEVVRHEVVASDRAIACVQEWHQAYP 53
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-------- 119
IIG N + R + + V + DER +T+ A+
Sbjct: 54 FEQVIIG-----NQTTSRRWQQ-------QLQAALAVEIIPVDERHSTLEARDRYWQLFP 101
Query: 120 ----QILIDMNVSRKKRIQKVDSIAAALILQEV 148
Q LI + R +D I A ++L+
Sbjct: 102 PRGWQRLIPKGLRVPPR--PIDDIVAIVLLERY 132
>gi|110800077|ref|YP_696847.1| RNA-binding protein [Clostridium perfringens ATCC 13124]
gi|110674724|gb|ABG83711.1| RNA-binding protein [Clostridium perfringens ATCC 13124]
Length = 720
Score = 40.7 bits (95), Expect = 0.060, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
L+++ + + D G R G +AI D +F P + ++ +T L I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
+ +G NG+ A + I + +
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKEETGKELFYV 404
>gi|168210098|ref|ZP_02635723.1| RNA-binding protein [Clostridium perfringens B str. ATCC 3626]
gi|170711795|gb|EDT23977.1| RNA-binding protein [Clostridium perfringens B str. ATCC 3626]
Length = 720
Score = 40.7 bits (95), Expect = 0.062, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
L+++ + + D G R G +AI D +F P + ++ +T L I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
+ +G NG+ A + I + +
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKEETGKELFYV 404
>gi|168205596|ref|ZP_02631601.1| RNA-binding protein [Clostridium perfringens E str. JGS1987]
gi|169344206|ref|ZP_02865188.1| RNA-binding protein [Clostridium perfringens C str. JGS1495]
gi|169297664|gb|EDS79764.1| RNA-binding protein [Clostridium perfringens C str. JGS1495]
gi|170662934|gb|EDT15617.1| RNA-binding protein [Clostridium perfringens E str. JGS1987]
Length = 720
Score = 40.7 bits (95), Expect = 0.063, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
L+++ + + D G R G +AI D +F P + ++ +T L I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
+ +G NG+ A + I + +
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKEETGKELFYV 404
>gi|325116530|emb|CBZ52084.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 711
Score = 40.7 bits (95), Expect = 0.065, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 91 RAFVHNMIDRKVYVP--FVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEV 148
RA N D +P +DE LTT A++ + R R +DS +AA++ +
Sbjct: 600 RAKKGNQTDASPALPPAVFLYDESLTTAEARRAQKE----RSSRGDFLDSQSAAVLGRRF 655
Query: 149 LDR 151
LD
Sbjct: 656 LDE 658
>gi|121604844|ref|YP_982173.1| RNA-binding S1 domain-containing protein [Polaromonas
naphthalenivorans CJ2]
gi|120593813|gb|ABM37252.1| RNA binding S1 domain protein [Polaromonas naphthalenivorans CJ2]
Length = 778
Score = 40.7 bits (95), Expect = 0.067, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 20/137 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G+ A+ D + A P RK +
Sbjct: 319 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDTTGKLVETATVFPHEPRKDWDGSLHT 377
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS- 117
L + IG NG+ T +++ R + V E +V
Sbjct: 378 LAKLCEKHGVNLIAIG-----NGTAS---RETDKLAADLMKRIDGMQRVVVSEAGASVYS 429
Query: 118 ----AQQILIDMNVSRK 130
A Q + D++VS +
Sbjct: 430 ASEFASQEMPDVDVSLR 446
>gi|312897530|ref|ZP_07756950.1| hypothetical protein HMPREF9429_00203 [Megasphaera micronuciformis
F0359]
gi|310621382|gb|EFQ04922.1| hypothetical protein HMPREF9429_00203 [Megasphaera micronuciformis
F0359]
Length = 138
Score = 40.7 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 31/141 (21%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA----FIIG 74
I +ID G+ + G+A+ ++K LL ++ + ++G
Sbjct: 2 ILAIDPGSVKTGVALVHEDGEL--------KEKRIIPTQSLLQYVQECYDSGALKSVVMG 53
Query: 75 LPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
+G+ + ++++ + V F + +E+ TTV +++ + R
Sbjct: 54 -----DGTRHESLGNLVKSWIG---EGHDEVSFSYVNEKFTTVEGRKLYWQYTPRKGWRK 105
Query: 134 ----------QKVDSIAAALI 144
+ VD A +I
Sbjct: 106 FVPTSWQYPPEPVDDFVAWII 126
>gi|309390180|gb|ADO78060.1| resolvase RNase H domain protein fold protein [Halanaerobium
praevalens DSM 2228]
Length = 145
Score = 40.3 bits (94), Expect = 0.077, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 36/150 (24%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT----ENIAAFIIG 74
+ ++D G +IG A+ D V++K EL ++ + I+G
Sbjct: 5 LLALDPGRDKIGAAVLD--------YQAQVQEKTIVPLTELEDYLEELDCNYQLQEVIVG 56
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYV-PFVFWDERLTTVSAQ-QILIDMNVS---- 128
NG+ G V ++ + E TT +AQ + L + +S
Sbjct: 57 -----NGT-GAAG------VMELLQKNFDFKKINLVVEEFTTEAAQKRYLKEKPMSNYEK 104
Query: 129 --RK----KRIQKVDSIAAALILQEVLDRI 152
RK K + +D AA +I ++ L ++
Sbjct: 105 LLRKFVNWKVSKALDDYAALIIGEKYLKKL 134
>gi|325831217|ref|ZP_08164509.1| Tex-like protein N-terminal domain protein [Eggerthella sp. HGA1]
gi|325486818|gb|EGC89265.1| Tex-like protein N-terminal domain protein [Eggerthella sp. HGA1]
Length = 717
Score = 40.3 bits (94), Expect = 0.080, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 13/113 (11%)
Query: 15 PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69
I ++D G R G +A+ D + P R +V +T +L +++ I
Sbjct: 313 RGARIIALDPG-YRTGCKVAVLDEYGKLLDHTTVYPTPPRSQVKETQAQLAAYVEKHRIN 371
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+IG NG+ + K V + +E +V + L
Sbjct: 372 VIVIG-----NGTGSRETEEV--VADYIARSKAPVRYTIVNEAGASVYSASKL 417
>gi|148243441|ref|YP_001228598.1| polynucleotidyl transferase [Synechococcus sp. RCC307]
gi|147851751|emb|CAK29245.1| Polynucleotidyl transferase, Ribonuclease H fold superfamily
[Synechococcus sp. RCC307]
Length = 141
Score = 40.3 bits (94), Expect = 0.080, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 24/139 (17%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D G ++ GL +D A L+ + L + + ++G +
Sbjct: 7 ALDPGRQKCGLVRTDASG--AELVDLLIC-SPREAWDWLQHWQHQAPLQGVVLG-----D 58
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ----QILIDMNVSRKKRIQK- 135
G+ + + + VP V E +T++A+ Q+L R
Sbjct: 59 GTASGPWQQA------LAELEPAVPVVLQPEAGSTLAARERYWQLLPARGWQRLLPRGLR 112
Query: 136 -----VDSIAAALILQEVL 149
VD +AA ++L+ L
Sbjct: 113 LPPRPVDDLAAMVLLEAHL 131
>gi|257791221|ref|YP_003181827.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM
2243]
gi|257475118|gb|ACV55438.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243]
Length = 717
Score = 40.3 bits (94), Expect = 0.082, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 13/113 (11%)
Query: 15 PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69
I ++D G R G +A+ D + P R +V +T +L +++ I
Sbjct: 313 RGARIIALDPG-YRTGCKVAVLDEYGKLLDHTTVYPTPPRSQVKETQAQLAAYVEKHRIN 371
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+IG NG+ + K V + +E +V + L
Sbjct: 372 VIVIG-----NGTGSRETEEV--VADYIARSKAPVRYTIVNEAGASVYSASKL 417
>gi|317488041|ref|ZP_07946622.1| hypothetical protein HMPREF1023_00320 [Eggerthella sp. 1_3_56FAA]
gi|316912871|gb|EFV34399.1| hypothetical protein HMPREF1023_00320 [Eggerthella sp. 1_3_56FAA]
Length = 717
Score = 40.3 bits (94), Expect = 0.083, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 13/113 (11%)
Query: 15 PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69
I ++D G R G +A+ D + P R +V +T +L +++ I
Sbjct: 313 RGARIIALDPG-YRTGCKVAVLDEYGKLLDHTTVYPTPPRSQVKETQAQLAAYVEKHRIN 371
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+IG NG+ + K V + +E +V + L
Sbjct: 372 VIVIG-----NGTGSRETEEV--VADYIARSKAPVRYTIVNEAGASVYSASKL 417
>gi|169836674|ref|ZP_02869862.1| hypothetical protein cdivTM_06152 [candidate division TM7
single-cell isolate TM7a]
Length = 43
Score = 40.3 bits (94), Expect = 0.087, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 18 PIASIDLGTKRIGLAISDPGRRF 40
+ +D+G KRIG+A++D G +
Sbjct: 21 RLLCLDVGEKRIGVAVADLGVKI 43
>gi|323140937|ref|ZP_08075850.1| hypothetical protein HMPREF9443_00615 [Phascolarctobacterium sp.
YIT 12067]
gi|322414675|gb|EFY05481.1| hypothetical protein HMPREF9443_00615 [Phascolarctobacterium sp.
YIT 12067]
Length = 136
Score = 40.3 bits (94), Expect = 0.095, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 25/140 (17%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G + GLA+ + L A EL F+ + + I+G
Sbjct: 5 LGVDPGRSKTGLALVAADGKILS----LHIAMTDNLAAELRQFVGSAKLQGIIMG----- 55
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI------ 133
NG+ +A + + + E +T A+ + N + R
Sbjct: 56 NGTNN------KAIGAVLRELYPDLVPELVGEAYSTEEARSLYWQENPPKGWRKLVPLGL 109
Query: 134 ----QKVDSIAAALILQEVL 149
+ +D+ AA + ++ L
Sbjct: 110 LVPPEPLDAYAAVVQVRRWL 129
>gi|167945469|ref|ZP_02532543.1| hypothetical protein Epers_02645 [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 57
Score = 40.3 bits (94), Expect = 0.097, Method: Composition-based stats.
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAH 42
+ D GT++IG+A+ A
Sbjct: 2 TLLGFDFGTRKIGVAVGQTVSGTAS 26
>gi|33864100|ref|NP_895660.1| hypothetical protein PMT1833 [Prochlorococcus marinus str. MIT
9313]
gi|33635684|emb|CAE22008.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 152
Score = 39.9 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 27/142 (19%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D G + GL A V + A +L I A + G+ +
Sbjct: 12 RLVAVDPGRNKCGL-------VLADTATNAVLEGKVVAAAAVLDLIMHWQNQAPLAGILI 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNVSRKKRI 133
NG+ + N++ + +ER +T+ A+ + N R
Sbjct: 65 G-NGTSSE-------YWQNLLRHIAPLHV--VEERGSTLRARHRYWELWPPSNWRRWLPR 114
Query: 134 QKV------DSIAAALILQEVL 149
+ D+IAA ++L++ L
Sbjct: 115 GMILPPHHLDAIAAMVLLEDHL 136
>gi|210629846|ref|ZP_03296143.1| hypothetical protein COLSTE_00026 [Collinsella stercoris DSM 13279]
gi|210160786|gb|EEA91757.1| hypothetical protein COLSTE_00026 [Collinsella stercoris DSM 13279]
Length = 271
Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 23/129 (17%)
Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
A P + R +T + NIA + P M+G + RV + RA V
Sbjct: 123 IALPL-TIARTPAKETLARVEQVAQRLNIAGVLDKYPYQMSGGQQQRVAAARALV----- 176
Query: 100 RKVYVPFVFWDE---RLTTVSAQQILIDM--NVSRKKRIQKV----DSIAAALILQEVLD 150
+ DE L + +A ++L++ ++R+ + + DS AA +
Sbjct: 177 --TDPAVILADEPTGALDSKNA-RLLLESLEAMNRQYQATVLMVTHDSFAA-----SYTN 228
Query: 151 RISFLESSK 159
R+ F+ +
Sbjct: 229 RVLFIRDGR 237
>gi|302390897|ref|YP_003826717.1| Tex-like protein [Acetohalobium arabaticum DSM 5501]
gi|302202974|gb|ADL11652.1| Tex-like protein [Acetohalobium arabaticum DSM 5501]
Length = 718
Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 15/108 (13%)
Query: 15 PNQPIASIDLGTKRIG--LAISDPGR---RFAHPRPFLVRKKVTQTALELLSFITTENIA 69
++ + ID G R G +A+ D A P +KKV++ +L IT N+
Sbjct: 315 RDKRVLGIDPGF-RTGSKVAVVDEIGNLLATAAIYPHPPQKKVSEAKEQLEELITEYNVD 373
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTV 116
IG NG+ T +I ++ + +V +E +V
Sbjct: 374 LIAIG-----NGT---ACRETEELAAEIIKESELDLHYVIVNEAGASV 413
>gi|317010615|gb|ADU84362.1| Holliday junction resolvase-like protein [Helicobacter pylori
SouthAfrica7]
Length = 84
Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++G P N + F+ ++D VF +E +++ A + L + K
Sbjct: 2 LVVGKP---NENYADTNIRIEHFI-KLVD--FKGEIVFINEDSSSIEACENLEYLGRKNK 55
Query: 131 K---RIQKVDSIAAALILQEV 148
+ + ++DS++A IL+
Sbjct: 56 RLAIKDGRLDSLSACGILERY 76
>gi|168053781|ref|XP_001779313.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669325|gb|EDQ55915.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 632
Score = 39.5 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 17/115 (14%)
Query: 44 RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
L+ ++ AL LL E A + L G E + R F N+ +RK
Sbjct: 88 LDVLLTERRVDDALALL-----EEGEALAVRLSKANGGVESVNRDAVRQFEENLSERKSG 142
Query: 104 VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI-----AAALILQEVLDRIS 153
+ D A + L + I +D + A L+LQ +R+
Sbjct: 143 LVVYLVD-------AVRQLTFRGSELRHAIAALDKLGDGSRAHTLLLQSHEERLK 190
>gi|282850062|ref|ZP_06259444.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
gi|282580251|gb|EFB85652.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
Length = 175
Score = 39.5 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 32/141 (22%)
Query: 19 IASIDLGTKRIGLA-ISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I ++D G ++ G+A +S G R + + +L+ I + G
Sbjct: 7 ILAVDPGNEKTGIAIVSPSGEMIC--RKIISSNTFNEDIERVLT--EYYGIVHIVCG--- 59
Query: 78 NMNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
NG+ P + R + DE +T A+++ N R
Sbjct: 60 --NGTNHKHLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWQYNPPTGWRK 109
Query: 134 ----------QKVDSIAAALI 144
+ VD + A +I
Sbjct: 110 IIPTSMQFPPEPVDDLTALVI 130
>gi|182624039|ref|ZP_02951827.1| RNA-binding protein [Clostridium perfringens D str. JGS1721]
gi|177910932|gb|EDT73286.1| RNA-binding protein [Clostridium perfringens D str. JGS1721]
Length = 720
Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
L+++ + + D G R G +AI D +F P + ++ +T L I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
+ +G NG+ A + I + +
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKDETGKELFYV 404
>gi|168215796|ref|ZP_02641421.1| RNA-binding protein [Clostridium perfringens NCTC 8239]
gi|182382370|gb|EDT79849.1| RNA-binding protein [Clostridium perfringens NCTC 8239]
Length = 720
Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
L+++ + + D G R G +AI D +F P + ++ +T L I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
+ +G NG+ A + I + +
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKDETGKELFYV 404
>gi|110803195|ref|YP_699443.1| transcription accessory protein [Clostridium perfringens SM101]
gi|110683696|gb|ABG87066.1| RNA-binding protein [Clostridium perfringens SM101]
Length = 720
Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
L+++ + + D G R G +AI D +F P + ++ +T L I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
+ +G NG+ A + I + +
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKDETGKELFYV 404
>gi|290968959|ref|ZP_06560494.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
gi|290780915|gb|EFD93508.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
Length = 138
Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 29/146 (19%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLSFITTENIAAFIIGL 75
I SID G+++ G+A+ LV K + TA L IA ++G
Sbjct: 2 IFSIDPGSEKTGIAVIRQDG-------TLVEKHIIPTAALLSVLQDKTQQYTIAHIVMG- 53
Query: 76 PLNMNGSEG-PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133
+G+ P + + +V + F +E+ TTV +++ R R
Sbjct: 54 ----DGTNHKPLQVQVEQW---LQSNRVPIDFSLVNEKFTTVEGRRLYFQYTPLRGWRRF 106
Query: 134 ---------QKVDSIAAALILQEVLD 150
+ VD A +I + L+
Sbjct: 107 IPRAWQYPPEPVDDFVAWIIGKRYLE 132
>gi|18311150|ref|NP_563084.1| hypothetical protein CPE2168 [Clostridium perfringens str. 13]
gi|18145833|dbj|BAB81874.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 720
Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFI 63
L+++ + + D G R G +AI D +F P + ++ +T L I
Sbjct: 305 LMQAPIKGKVVMGFDPGF-RTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLI 363
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
+ +G NG+ A + I + +
Sbjct: 364 KKHGVQVISLG-----NGTASRESEEVIAKMLKEIKDETGKELFYV 404
>gi|91203240|emb|CAJ72879.1| strongly similar to maltose transport system ATP-binding protein
[Candidatus Kuenenia stuttgartiensis]
Length = 359
Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 10/96 (10%)
Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
A P K + + + I + P ++G E RV RA V N
Sbjct: 95 IAFPLRIRKAKDLNENVENTARML---GINNLLQKYPKELSGGEKQRVALARALVRN--- 148
Query: 100 RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
DE L+ + A+ + +K + Q+
Sbjct: 149 ----PQVFLMDEPLSNLDARLRISARGELKKLQKQR 180
>gi|118588274|ref|ZP_01545683.1| hypothetical protein SIAM614_23372 [Stappia aggregata IAM 12614]
gi|118438980|gb|EAV45612.1| hypothetical protein SIAM614_23372 [Stappia aggregata IAM 12614]
Length = 846
Score = 39.2 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + +D G R G+ A+ D + A PF R V+ +
Sbjct: 357 NLKDLLLAAPAGSRTTLGLDPGI-RTGVKVAVVDATGKLVDTATIYPFQPRNDVSGSRAA 415
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
LL+ I + IG NG+
Sbjct: 416 LLALIAKHKVGLIAIG-----NGTASRETDK 441
>gi|170078280|ref|YP_001734918.1| hypothetical protein SYNPCC7002_A1673 [Synechococcus sp. PCC 7002]
gi|13924476|gb|AAK49024.1| hypothetical protein [Synechococcus sp. PCC 7002]
gi|169885949|gb|ACA99662.1| conserved hypothetical protein [Synechococcus sp. PCC 7002]
Length = 133
Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 30/144 (20%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
D G + GLA D + + + + A E + ++ ++G
Sbjct: 5 LGFDPGRDKCGLAALDDQGQLLN-HGVIAADQAPNIAKE---WCQRYGVSLVVMG----- 55
Query: 80 NGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQ------------QILIDMN 126
+ + + + + F +ER +T+ A+ Q L+
Sbjct: 56 ------NQTTAKEWHQKLTAVLPPDMAIAFVNERNSTLEARDRYWQMYPPNLFQRLLPQG 109
Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
+ R +D I A L+++ L+
Sbjct: 110 MRLPPR--PIDDIVAILLVERYLN 131
>gi|332283688|ref|YP_004415599.1| transcription accessory protein [Pusillimonas sp. T7-7]
gi|330427641|gb|AEC18975.1| transcription accessory protein [Pusillimonas sp. T7-7]
Length = 804
Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 17/112 (15%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL---AISDPGRR---FAHPRPFLVRKKVTQTAL 57
++DL+ + + + +D G R G+ AI D + + PF R+ +
Sbjct: 345 NLKDLLLAAPAGPKTVLGLDPGI-RTGVKVAAI-DATGKVLATSTVYPFEPRRDREGSIN 402
Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
L + IT I IG NG+ T V +M ++ +
Sbjct: 403 TLAALITKHKIELVAIG-----NGTAS---RETEKLVTDMQEKFPDLKLTRV 446
>gi|319408675|emb|CBI82330.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 156
Score = 38.8 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
+Q I +DLGTK G AIS A ++ + L F
Sbjct: 5 SQTILCLDLGTKT-GWAISSEDGTIASGTVNFSTRRFEGGGMRYLRF 50
>gi|305664326|ref|YP_003860614.1| hypothetical protein Igag_1941 [Ignisphaera aggregans DSM 17230]
gi|304378895|gb|ADM28734.1| hypothetical protein Igag_1941 [Ignisphaera aggregans DSM 17230]
Length = 220
Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 46/135 (34%), Gaps = 33/135 (24%)
Query: 19 IASIDLGTKRIGLAI---SDPGRRFAHPRPFLVRKKVTQTALELLSFITTE----NIAAF 71
I ID G IG+AI SD + K + LE+L +I
Sbjct: 102 IVGIDFGD-SIGIAIFVNSD--------IVLVNSYKSKEKVLEILKMFIEYSDSIDIKTI 152
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF--VFWDERLTTVSAQQILIDMNVSR 129
IGLP ++ AFV +I P F E ++ Q+ ID
Sbjct: 153 RIGLPRFLSDKYN-------AFVDTLIKSFRNHPVNFEFVPEDKSSK--QRQFID----- 198
Query: 130 KKRIQKVDSIAAALI 144
DSIAA I
Sbjct: 199 -NMKLDKDSIAAINI 212
>gi|223933143|ref|ZP_03625135.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
gi|223898204|gb|EEF64573.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
Length = 713
Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P ++++ Q +L I
Sbjct: 301 KGKVVLGFDPAF---RTGAKLAVVDQTGKLLTTQVIYPVEPAGQRQIAQAKKDLADLIGQ 357
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV +++ V +V +E +V + L
Sbjct: 358 YQVEIIAIG-----NGTAS---RESEAFVADLLKDFPDVSYVIVNESGASVYSASEL 406
>gi|330833236|ref|YP_004402061.1| RNA binding S1 domain-containing protein [Streptococcus suis ST3]
gi|329307459|gb|AEB81875.1| RNA binding S1 domain protein [Streptococcus suis ST3]
Length = 713
Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P ++++ Q +L I
Sbjct: 301 KGKVVLGFDPAF---RTGAKLAVVDQTGKLLTTQVIYPVEPAGQRQIAQAKKDLADLIGQ 357
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV +++ V +V +E +V + L
Sbjct: 358 YQVEIIAIG-----NGTAS---RESEAFVADLLKDFPDVSYVIVNESGASVYSASEL 406
>gi|269103902|ref|ZP_06156599.1| transcription accessory protein [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163800|gb|EEZ42296.1| transcription accessory protein [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 776
Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + +ID G R G +A+ D + A P K+ +
Sbjct: 313 NLKDLLMAAPAGPRVTLAIDPGL-RTGSKIAVVDETGKLLDTATIYPHAPHNKIAEAGKV 371
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
+L+FI + IG NG+ T +FV +I
Sbjct: 372 VLAFIAKYQVNLIAIG-----NGTAS---RETDSFVAQLIK 404
>gi|187477713|ref|YP_785737.1| transcription accessory protein [Bordetella avium 197N]
gi|115422299|emb|CAJ48823.1| transcription accessory protein [Bordetella avium 197N]
Length = 790
Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 15/106 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + + +D G R G +A+ D + A PF R T
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKIAVIDRTGKVVDTATVYPFEPRMDRKGTINT 389
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
L + + IG NG+ + V M+ + +
Sbjct: 390 LAALCAKHKVELIAIG-----NGTAS---RESEKLVGEMMSQFSEL 427
>gi|77918517|ref|YP_356332.1| transcriptional accessory protein [Pelobacter carbinolicus DSM
2380]
gi|77544600|gb|ABA88162.1| transcriptional accessory protein [Pelobacter carbinolicus DSM
2380]
Length = 759
Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAA 70
++ + +D G R G LA D R+ A P + ++ +LL I T I
Sbjct: 323 SRRVLGVDPGL-RTGSKLAAVDGTGRYLEDATIYPHTGKSQIEPARAQLLRLIQTHGIEM 381
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124
IG NG+ G + FV + D V +P V +E +V SA I +
Sbjct: 382 VAIG-----NGTAGREMDL---FVRETLRDAGVQLPVVMVNEAGASVYSASDIARE 429
>gi|294795166|ref|ZP_06760300.1| conserved hypothetical protein [Veillonella sp. 3_1_44]
gi|294453958|gb|EFG22333.1| conserved hypothetical protein [Veillonella sp. 3_1_44]
Length = 175
Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 30/140 (21%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G ++ G+AI P R ++ K+ +L+ I + G
Sbjct: 7 ILAVDPGNEKTGVAIVTPSGTMV-CRKIIMTKQFNGEIERILT--EYYGIVHMVCG---- 59
Query: 79 MNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133
NG+ P + R + DE +T A+++ N R
Sbjct: 60 -NGTNHKYLYPSLQQI--------GRNHKITTSLIDESHSTEEARKLYWKYNPPTGWRKI 110
Query: 134 ---------QKVDSIAAALI 144
+ VD + A +I
Sbjct: 111 IPTSMQFPPEPVDDLTAFVI 130
>gi|24379213|ref|NP_721168.1| transcriptional accessory protein [Streptococcus mutans UA159]
gi|24377125|gb|AAN58474.1|AE014917_5 conserved hypothetical protein; possible transcriptional accessory
protein [Streptococcus mutans UA159]
Length = 708
Score = 38.8 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P + K+ Q EL I
Sbjct: 305 KGKVVLGFDPAF---RTGAKLAVVDQTGKLIMTQVIYPVPPASQSKINQAKSELAELIKR 361
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 362 YAIEIIAIG-----NGTAS---RESEAFVAEILKDFPQVSYVLVNESGASVYSASEL 410
>gi|160902641|ref|YP_001568222.1| RNA-binding S1 domain-containing protein [Petrotoga mobilis SJ95]
gi|160360285|gb|ABX31899.1| RNA binding S1 domain protein [Petrotoga mobilis SJ95]
Length = 720
Score = 38.4 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 15 PNQPIASIDLGTKRIG---LAISDPGRRFA--HPRPFLVRKKVTQTALELLSFITTENIA 69
N+ + +ID G R G +A+ + G A P + + + ++ I N+
Sbjct: 308 KNKRVLAIDPGF-RTGCKVVALDEMGNFLANDTIFPVPPQNDIENSEKIMMGLIQKYNVN 366
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQIL 122
IG NG+ T+ FV ++I + K+ + ++F DE +V + L
Sbjct: 367 LIAIG-----NGTAS---RETQQFVVDLIKKNKLNLKYIFVDESGASVYSASKL 412
>gi|300785862|ref|YP_003766153.1| ROK family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299795376|gb|ADJ45751.1| ROK family transcriptional regulator [Amycolatopsis mediterranei
U32]
Length = 400
Score = 38.4 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 20/73 (27%)
Query: 18 PIASIDLGTKRIGLAISDPGR-RFAH----------PRPFLVRKKVTQTALELLSFITTE 66
+ ++D+G +G+A++D AH P P L R EL + I E
Sbjct: 83 RVLAVDVGATSVGVAVTDASCEVLAHTVEDGDVRQGPHPVLRR------VAELAAKIRDE 136
Query: 67 NIAAFI---IGLP 76
I IGLP
Sbjct: 137 APGRLIAAGIGLP 149
>gi|329895297|ref|ZP_08270939.1| UDP-glucose dehydrogenase [gamma proteobacterium IMCC3088]
gi|328922419|gb|EGG29762.1| UDP-glucose dehydrogenase [gamma proteobacterium IMCC3088]
Length = 389
Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 22/115 (19%)
Query: 36 PGRRFAHPRPFLVRKKV---TQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRA 92
P A L ++ + E + E + I+G + R
Sbjct: 121 PVGFTARLNQTLDTDRIVFSPEFLREGQALKDNEYPSRIIVG----------AQTEQARE 170
Query: 93 FVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---VDSIAAA 142
F + +KV VP + D + A+ I + N R+ +D+ AA
Sbjct: 171 FAELLQYAAKKVDVPVLLAD----STEAEAIKLFANTYLAMRVAYFNELDTYAAV 221
>gi|91788399|ref|YP_549351.1| RNA-binding S1 [Polaromonas sp. JS666]
gi|91697624|gb|ABE44453.1| RNA binding S1 [Polaromonas sp. JS666]
Length = 803
Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 15/107 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G+ A+ D + A P RK +
Sbjct: 332 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRKDWDGSLHA 390
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVP 105
L + IG NG+ T ++I V
Sbjct: 391 LAKLCEKHGVNLIAIG-----NGTAS---RETDKLAADLIKLMAKVE 429
>gi|229816013|ref|ZP_04446334.1| hypothetical protein COLINT_03066 [Collinsella intestinalis DSM
13280]
gi|229808327|gb|EEP44108.1| hypothetical protein COLINT_03066 [Collinsella intestinalis DSM
13280]
Length = 286
Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 23/129 (17%)
Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
A P + R +T + +IA + P M+G + RV + RA V
Sbjct: 138 IALPL-TIARVPAKETLARVEQVAQRLDIAGVLDKYPYQMSGGQQQRVAAARALV----- 191
Query: 100 RKVYVPFVFWDE---RLTTVSAQQILIDM--NVSRKKRIQKV----DSIAAALILQEVLD 150
+ DE L + +A ++L++ ++R+ + + DS AA +
Sbjct: 192 --TDPAIILADEPTGALDSKNA-RLLLESIETMNRQYQATVLMVTHDSFAA-----SYTN 243
Query: 151 RISFLESSK 159
R+ F+ +
Sbjct: 244 RVLFIRDGR 252
>gi|148264302|ref|YP_001231008.1| RNA-binding S1 domain-containing protein [Geobacter uraniireducens
Rf4]
gi|146397802|gb|ABQ26435.1| RNA binding S1 domain protein [Geobacter uraniireducens Rf4]
Length = 757
Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 15/102 (14%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAA 70
++ + ID G R G LA D RF V ELL I +
Sbjct: 323 SKRVLGIDPGL-RTGSKLAAVDETGRFLSHCTIYPHTGSSNVEPAKRELLRIIDSNRCEI 381
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDE 111
+G NG+ G + F + + + +P V +E
Sbjct: 382 IAVG-----NGTAGREMEL---FARQTLTEAGLRLPVVVVNE 415
>gi|319946581|ref|ZP_08020815.1| S1 RNA binding domain protein [Streptococcus australis ATCC 700641]
gi|319746629|gb|EFV98888.1| S1 RNA binding domain protein [Streptococcus australis ATCC 700641]
Length = 708
Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P ++ EL I
Sbjct: 305 KGRVVLGFDPAF---RTGAKLAVVDQTGKMLTTQVIYPVAPAKATQIEAAKEELKRLIRQ 361
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
++ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 362 YSVEIIAIG-----NGTAS---RESEAFVAEVLKEVPNVSYVIVNESGASVYSASEL 410
>gi|290580778|ref|YP_003485170.1| hypothetical protein SmuNN2025_1252 [Streptococcus mutans NN2025]
gi|254997677|dbj|BAH88278.1| conserved hypothetical protein [Streptococcus mutans NN2025]
Length = 708
Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P + K+ Q EL I
Sbjct: 305 KGKVVLGFDPAF---RTGAKLAVVDQTGKLIMTQVIYPVPPAGQSKINQAKSELAELIKR 361
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 362 YAIEIIAIG-----NGTAS---RESEAFVAEILKDFPQVSYVLVNESGASVYSASEL 410
>gi|222056100|ref|YP_002538462.1| RNA binding S1 domain protein [Geobacter sp. FRC-32]
gi|221565389|gb|ACM21361.1| RNA binding S1 domain protein [Geobacter sp. FRC-32]
Length = 756
Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 18/117 (15%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLV----RKKVTQTALELLSFITTENIA 69
N+ + +D G R G LA D RF + + ELL I +
Sbjct: 323 NKRVLGVDPGL-RTGSKLAAVDETGRF-LGHCTIYPHTGSGNIEPAKRELLRMIHSHQSE 380
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124
IG NG+ G + FV + + + +P V +E +V SA I +
Sbjct: 381 LVAIG-----NGTAGREMEL---FVRQTLTEAGLRLPVVVVNEAGASVYSASDIARE 429
>gi|77413082|ref|ZP_00789283.1| S1 RNA binding domain protein [Streptococcus agalactiae 515]
gi|77160875|gb|EAO71985.1| S1 RNA binding domain protein [Streptococcus agalactiae 515]
Length = 764
Score = 37.6 bits (87), Expect = 0.51, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P + K+ Q+ +EL I
Sbjct: 351 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 407
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
NI IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 408 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 456
>gi|183603638|ref|ZP_02964444.1| protein tex [Streptococcus pneumoniae CDC3059-06]
gi|183575709|gb|EDT96237.1| protein tex [Streptococcus pneumoniae CDC3059-06]
Length = 805
Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 397 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 452
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 453 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 504
Query: 120 QIL 122
L
Sbjct: 505 SEL 507
>gi|157412608|ref|YP_001483474.1| hypothetical protein P9215_02711 [Prochlorococcus marinus str. MIT
9215]
gi|157387183|gb|ABV49888.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
9215]
Length = 145
Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 42/149 (28%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL---ELLS-----FITTENIA 69
+ +ID G + GL + KKV + + ELL IT E+I+
Sbjct: 3 KVITIDPGKSKCGL-----------VLAEISEKKVYEAIILKSELLENYVSYLITAEDIS 51
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
IIG NG+ + F V +DE+ TT A+ ++ R
Sbjct: 52 QIIIG-----NGTSSREIREKLYFFKK--------EIVTFDEKNTTYRAKARYFELFPIR 98
Query: 130 KKR----------IQKVDSIAAALILQEV 148
+ + +D+I+A +IL++
Sbjct: 99 GLKFLIPREVFILNKNLDAISALIILEDY 127
>gi|124024147|ref|YP_001018454.1| hypothetical protein P9303_24581 [Prochlorococcus marinus str. MIT
9303]
gi|123964433|gb|ABM79189.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9303]
Length = 152
Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 35/146 (23%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN----IAAFII 73
+ ++D G + GL A V + A +L I + +I
Sbjct: 12 KLVAVDPGRNKCGL-------VLADTATSAVLEGKVVAAAAVLDLIMHWQNQAPLEGILI 64
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNVSR 129
G NG+ + N++ + +ER +T+ A+ + N R
Sbjct: 65 G-----NGTSSE-------YWQNLLLHIAPLHV--VEERGSTLRARHRYWELWPPSNWRR 110
Query: 130 KKRIQKV------DSIAAALILQEVL 149
+ D+IAA ++L++ L
Sbjct: 111 WLPRGMILPPHHLDAIAAMVLLEDHL 136
>gi|77409101|ref|ZP_00785816.1| S1 RNA binding domain protein [Streptococcus agalactiae COH1]
gi|77172279|gb|EAO75433.1| S1 RNA binding domain protein [Streptococcus agalactiae COH1]
Length = 764
Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P + K+ Q+ +EL I
Sbjct: 351 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 407
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
NI IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 408 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 456
>gi|77406413|ref|ZP_00783472.1| S1 RNA binding domain protein [Streptococcus agalactiae H36B]
gi|77174977|gb|EAO77787.1| S1 RNA binding domain protein [Streptococcus agalactiae H36B]
Length = 640
Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P + K+ Q+ +EL I
Sbjct: 326 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 382
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
NI IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 383 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 431
>gi|319744762|gb|EFV97103.1| YhgF like protein [Streptococcus agalactiae ATCC 13813]
Length = 747
Score = 37.6 bits (87), Expect = 0.55, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P + K+ Q+ +EL I
Sbjct: 334 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 390
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
NI IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 391 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 439
>gi|76798194|ref|ZP_00780445.1| hypothetical protein SAJ_0796 [Streptococcus agalactiae 18RS21]
gi|77410770|ref|ZP_00787128.1| S1 RNA binding domain protein [Streptococcus agalactiae CJB111]
gi|76586457|gb|EAO62964.1| hypothetical protein SAJ_0796 [Streptococcus agalactiae 18RS21]
gi|77163149|gb|EAO74102.1| S1 RNA binding domain protein [Streptococcus agalactiae CJB111]
Length = 747
Score = 37.6 bits (87), Expect = 0.55, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P + K+ Q+ +EL I
Sbjct: 334 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 390
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
NI IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 391 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 439
>gi|302038462|ref|YP_003798784.1| putative transcriptional accessory protein [Candidatus Nitrospira
defluvii]
gi|300606526|emb|CBK42859.1| predicted Transcriptional accessory protein [Candidatus Nitrospira
defluvii]
Length = 799
Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 15/101 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ +L+ + + + +D G R G +A+ D + A P R
Sbjct: 333 NLHELLLAAPAGPKAVLGLDPGL-RTGCKVAVVDATGKLLDTATIYPHQPRNDWQGALAT 391
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
++ + + IG NG+ T F ++
Sbjct: 392 IVQLVLRHGVELISIG-----NGTAS---RETDKFAAEVVK 424
>gi|307944634|ref|ZP_07659974.1| protein YhgF [Roseibium sp. TrichSKD4]
gi|307772383|gb|EFO31604.1| protein YhgF [Roseibium sp. TrichSKD4]
Length = 810
Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + +D G R G+ A+ D + A PF R V+ +
Sbjct: 332 NLKDLLLAAPAGAKATLGLDPGI-RTGVKVAVVDETGKLIDTATIYPFQPRNDVSGSRAT 390
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
LL+ I + IG NG+
Sbjct: 391 LLALIAKHKVGLIAIG-----NGTASRETDK 416
>gi|169833704|ref|YP_001694361.1| S1 RNA-binding domain-containing protein [Streptococcus pneumoniae
Hungary19A-6]
gi|168996206|gb|ACA36818.1| S1 RNA binding domain protein [Streptococcus pneumoniae
Hungary19A-6]
Length = 790
Score = 37.6 bits (87), Expect = 0.63, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 382 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 437
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 438 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 489
Query: 120 QIL 122
L
Sbjct: 490 SEL 492
>gi|22536896|ref|NP_687747.1| transcriptional accessory protein Tex [Streptococcus agalactiae
2603V/R]
gi|25010809|ref|NP_735204.1| hypothetical protein gbs0754 [Streptococcus agalactiae NEM316]
gi|76788092|ref|YP_329480.1| S1 RNA-binding domain-containing protein [Streptococcus agalactiae
A909]
gi|22533747|gb|AAM99619.1|AE014225_2 transcriptional accessory protein Tex, putative [Streptococcus
agalactiae 2603V/R]
gi|23095163|emb|CAD46398.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563149|gb|ABA45733.1| S1 RNA binding domain protein [Streptococcus agalactiae A909]
Length = 720
Score = 37.6 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P + K+ Q+ +EL I
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPANQAKIEQSKIELAKLIKE 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
NI IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FNIEIIAIG-----NGTAS---RESEAFVAEVLQDFPDVSYVIVNESGASVYSASEL 412
>gi|238019694|ref|ZP_04600120.1| hypothetical protein VEIDISOL_01568 [Veillonella dispar ATCC 17748]
gi|237863735|gb|EEP65025.1| hypothetical protein VEIDISOL_01568 [Veillonella dispar ATCC 17748]
Length = 175
Score = 37.2 bits (86), Expect = 0.67, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 38/144 (26%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV---TQTALELLSFITT-ENIAAFIIG 74
I ++D G ++ G+A P +V +K+ Q E+ +T I + G
Sbjct: 7 ILAVDPGNEKTGVA-------IVTPSGTMVCRKIIMTKQFNDEIERTLTEYYGIVHIVCG 59
Query: 75 LPLNMNGSEG----PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
NG+ P + R + DE +T A+++ N
Sbjct: 60 -----NGTNHKYLYPSLQQI--------GRNHRITTSLIDESHSTEEARKLYWKYNPPTG 106
Query: 131 KRI----------QKVDSIAAALI 144
R + VD + A +I
Sbjct: 107 WRKIIPTSMQFPPEPVDDLTAFVI 130
>gi|172079513|ref|ZP_02932128.1| S1 RNA binding domain protein [Streptococcus pneumoniae CDC1873-00]
gi|172043456|gb|EDT51502.1| S1 RNA binding domain protein [Streptococcus pneumoniae CDC1873-00]
Length = 790
Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 382 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 437
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 438 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 489
Query: 120 QIL 122
L
Sbjct: 490 SEL 492
>gi|322389951|ref|ZP_08063491.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
903]
gi|321143387|gb|EFX38825.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
903]
Length = 718
Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D A P ++ Q EL S I
Sbjct: 315 KGRVVLGFDPAF---RTGAKLAVVDETGKMLATQVIYPVAPAKPAQIEQAKKELSSLIKE 371
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 372 FGVEIIAIG-----NGTAS---RESEAFVAEVLHDHPGVRYVIVNESGASVYSASEL 420
>gi|307704740|ref|ZP_07641637.1| protein tex [Streptococcus mitis SK597]
gi|307621719|gb|EFO00759.1| protein tex [Streptococcus mitis SK597]
Length = 709
Score = 37.2 bits (86), Expect = 0.70, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ ++ +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEESKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I ++ IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYDVEIIAIG-----NGTAS---RESEAFVAEVLKEFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|302875853|ref|YP_003844486.1| Tex-like protein-like [Clostridium cellulovorans 743B]
gi|307689286|ref|ZP_07631732.1| Tex-like protein-like [Clostridium cellulovorans 743B]
gi|302578710|gb|ADL52722.1| Tex-like protein-like [Clostridium cellulovorans 743B]
Length = 719
Score = 37.2 bits (86), Expect = 0.72, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 12/107 (11%)
Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLVRKKVTQTALE----LLSF 62
L+++ + + D G R G +A+ D + V K + E L
Sbjct: 303 LMQAPIKGKTVLGFDPGF-RTGCKIAVLDETGKILDTHTAYVTSKGKEGLQEEKAKLKEL 361
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
I ++ +G NG+ A + + ++ +
Sbjct: 362 ILKHDVDVISLG-----NGTASRESEEIIAELLKEVKNEIGKEIYYV 403
>gi|312868311|ref|ZP_07728511.1| Tex-like protein N-terminal domain protein [Streptococcus
parasanguinis F0405]
gi|311096056|gb|EFQ54300.1| Tex-like protein N-terminal domain protein [Streptococcus
parasanguinis F0405]
Length = 718
Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D A P ++ Q EL S I
Sbjct: 315 KGRVVLGFDPAF---RTGAKLAVVDETGKMLATQVIYPVAPAKPAQIEQAKKELSSLIKE 371
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 372 FGVEIIAIG-----NGTAS---RESEAFVAEVLHDHPGVRYVIVNESGASVYSASEL 420
>gi|332703310|ref|ZP_08423398.1| Tex-like protein [Desulfovibrio africanus str. Walvis Bay]
gi|332553459|gb|EGJ50503.1| Tex-like protein [Desulfovibrio africanus str. Walvis Bay]
Length = 710
Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 20/128 (15%)
Query: 5 LIEDLVKSLKPNQ-PIASIDLGTKRIG--LAISDPGRRFAHPRPFLV----RKKVTQTAL 57
+ +L+ + Q I ++D G R G LA D R H + K+ +
Sbjct: 304 NLRELLLASPLGQKRIMALDPGF-RTGAKLACLDAQGRLLH-HETIFPTGSEKQSREAGT 361
Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV- 116
+ I A +G NG+ G T AFV + V V +E +V
Sbjct: 362 RVRELTARFAIEAVAVG-----NGTAG---RETEAFVRGLA--LPGVAVVMVNESGASVY 411
Query: 117 SAQQILID 124
SA +I +
Sbjct: 412 SASEIARE 419
>gi|282855412|ref|ZP_06264733.1| polynucleotidyl transferase, ribonuclease H family [Pyramidobacter
piscolens W5455]
gi|282586708|gb|EFB91955.1| polynucleotidyl transferase, ribonuclease H family [Pyramidobacter
piscolens W5455]
Length = 145
Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 24/146 (16%)
Query: 20 ASIDLGTKRIGLAI-SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
ID G ++ G A+ G+ A + +K+ AL+ LP
Sbjct: 3 LGIDPGRQKFGWALAGGEGKLVASG--IVPAEKLEDFALKAARSCKDCEEWRLEGELPE- 59
Query: 79 MNGSE-----GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
+G G R FV + R E TT+ A+++ DM+ R +
Sbjct: 60 -DGKIAKVFCGDGTGHAR-FVQALARRFA---VELVGELNTTLEARRLYWDMHPPRGLKR 114
Query: 134 QK----------VDSIAAALILQEVL 149
VD +AA IL+ L
Sbjct: 115 FVPLSLLVPPRCVDDLAAFCILRRAL 140
>gi|306831829|ref|ZP_07464985.1| YhgF like protein [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|304426027|gb|EFM29143.1| YhgF like protein [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
Length = 710
Score = 37.2 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P + K+ Q+ +L I T
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPASQAKIEQSKKDLAELIRT 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 YGVEIIAIG-----NGTAS---RESEAFVAQVLKDFPDVSYVIVNESGASVYSASEL 412
>gi|288905732|ref|YP_003430954.1| S1 RNA binding domain protein [Streptococcus gallolyticus UCN34]
gi|325978764|ref|YP_004288480.1| RNA binding S1 domain-containing protein [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|288732458|emb|CBI14030.1| putative S1 RNA binding domain protein [Streptococcus gallolyticus
UCN34]
gi|325178692|emb|CBZ48736.1| RNA binding S1 domain protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 710
Score = 36.8 bits (85), Expect = 0.84, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P + K+ Q+ +L I T
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPASQAKIEQSKKDLAELIRT 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 YGVEIIAIG-----NGTAS---RESEAFVAQVLKDFPDVSYVIVNESGASVYSASEL 412
>gi|257455894|ref|ZP_05621111.1| protein tex [Enhydrobacter aerosaccus SK60]
gi|257446640|gb|EEV21666.1| protein tex [Enhydrobacter aerosaccus SK60]
Length = 849
Score = 36.8 bits (85), Expect = 0.84, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 29/144 (20%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGL--AI----------SDPGRRFAHPRPFLVRKKVTQTA 56
L+ + + I +D G + G+ A+ SD A PF KV +
Sbjct: 342 LMAAPAGQKTILGVDPGIRH-GVKMAVVDSLGHVAKNSDDSFAIATVYPFAPDNKVDEAK 400
Query: 57 LELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRA--FVHNMIDRKVYV---PFVFWDE 111
+ + ++ IG NG+ + N + P V +E
Sbjct: 401 QTIADLLKNHHVNLIAIG-----NGTASRETDALIKEILAENSAQGNGDIKAVPVV-VNE 454
Query: 112 RLTTV-----SAQQILIDMNVSRK 130
+V A Q L +++VS +
Sbjct: 455 SGASVYSASELASQELQELDVSIR 478
>gi|329121339|ref|ZP_08249965.1| ribonuclease RNase H fold domain protein [Dialister micraerophilus
DSM 19965]
gi|327469748|gb|EGF15214.1| ribonuclease RNase H fold domain protein [Dialister micraerophilus
DSM 19965]
Length = 144
Score = 36.8 bits (85), Expect = 0.85, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 23/137 (16%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I SID G+++ G+A+ + + +++ + L I I IG
Sbjct: 2 ILSIDPGSEKTGIAVVKKDGNLVM-KKIIKTERLEEEIKTLTKKIE---ITETAIG---- 53
Query: 79 MNGSEGPRVH-STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---- 133
NG+ ++ M +P DE+ TT +Q N + +
Sbjct: 54 -NGTHHKKLEKRIEKLYEEMKKE---IPISIVDEKYTTEIGEQWYKKANPPKGWKRIIPF 109
Query: 134 ------QKVDSIAAALI 144
+ VD A +I
Sbjct: 110 GMRTVDKPVDDYVAWVI 126
>gi|319408868|emb|CBI82525.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 155
Score = 36.8 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
I +DLGTK G AIS A ++ + L F
Sbjct: 7 TILCLDLGTKT-GWAISSEDGTIASGTVNFSTRRFEGGGMRYLRF 50
>gi|124266982|ref|YP_001020986.1| putative transcription accessory protein [Methylibium
petroleiphilum PM1]
gi|124259757|gb|ABM94751.1| putative transcription accessory protein [Methylibium
petroleiphilum PM1]
Length = 793
Score = 36.8 bits (85), Expect = 0.88, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 15/106 (14%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIGL--AI-SDPGRR--FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G+ A+ SD G+ A P RK
Sbjct: 323 NLRDLLLAAPAGKRVVMGLDPGI-RTGVKVAVVSDTGKVLDTATVYPHEPRKDWDGAIHT 381
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
L T + IG NG+ T ++I R +
Sbjct: 382 LGRLAATHGVNLIAIG-----NGTAS---RETDKLAADLIKRIQQL 419
>gi|315613267|ref|ZP_07888176.1| YhgF like protein [Streptococcus sanguinis ATCC 49296]
gi|315314502|gb|EFU62545.1| YhgF like protein [Streptococcus sanguinis ATCC 49296]
Length = 727
Score = 36.8 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 319 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKRDL 374
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I ++ IG NG+ + AFV ++ V +V +E +V +
Sbjct: 375 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAKVLKDFPEVSYVIVNESGASVYSA 426
Query: 120 QIL 122
L
Sbjct: 427 SEL 429
>gi|306829611|ref|ZP_07462801.1| YhgF like protein [Streptococcus mitis ATCC 6249]
gi|304428697|gb|EFM31787.1| YhgF like protein [Streptococcus mitis ATCC 6249]
Length = 709
Score = 36.8 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEILKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|322376679|ref|ZP_08051172.1| S1 RNA binding domain protein [Streptococcus sp. M334]
gi|321282486|gb|EFX59493.1| S1 RNA binding domain protein [Streptococcus sp. M334]
Length = 718
Score = 36.8 bits (85), Expect = 0.93, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 310 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 365
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 366 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 417
Query: 120 QIL 122
L
Sbjct: 418 SEL 420
>gi|309800173|ref|ZP_07694359.1| toxin expression - transcriptional accessory protein [Streptococcus
infantis SK1302]
gi|308116220|gb|EFO53710.1| toxin expression - transcriptional accessory protein [Streptococcus
infantis SK1302]
Length = 686
Score = 36.8 bits (85), Expect = 0.93, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 290 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKRDL 345
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 346 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 397
Query: 120 QIL 122
L
Sbjct: 398 SEL 400
>gi|319408082|emb|CBI81735.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 155
Score = 36.8 bits (85), Expect = 0.93, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
I +DLGTK G AIS A ++ + L F
Sbjct: 7 TILCLDLGTKT-GWAISSEDGTIASGTVNFSTRRFEGGGMRYLRF 50
>gi|254501681|ref|ZP_05113832.1| S1 RNA binding domain protein [Labrenzia alexandrii DFL-11]
gi|222437752|gb|EEE44431.1| S1 RNA binding domain protein [Labrenzia alexandrii DFL-11]
Length = 809
Score = 36.8 bits (85), Expect = 0.95, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + +D G R G+ A+ D + A PF R + +
Sbjct: 332 NLKDLLLAAPAGSKATLGLDPGI-RTGVKVAVVDETGKLIDTATIYPFQPRNDLAGSRNT 390
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
LL+ I + IG NG+
Sbjct: 391 LLALIAKHKVGLIAIG-----NGTASRETDK 416
>gi|219883220|ref|YP_002478382.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
gi|219867345|gb|ACL47683.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
Length = 763
Score = 36.8 bits (85), Expect = 0.95, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 16/114 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRRFAHPRPFLVRKKVTQ---TALE 58
+ +L+ + + +ID G R G + + DP +F + + V Q
Sbjct: 308 NLRELLLAAPAGMKSTLAIDPGF-RTGCKVVVLDPTGKFLEYQTIFPHQSVEQRQKAGQT 366
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-VFWDE 111
LL I + +G NG+ G T FV ++ P V +E
Sbjct: 367 LLKLIDRYQVELIAVG-----NGTAG---RETDEFVAELLQTLEPKPVKVMVNE 412
>gi|15902852|ref|NP_358402.1| toxin expression - transcriptional accessory protein [Streptococcus
pneumoniae R6]
gi|149002452|ref|ZP_01827386.1| Toxin expression - transcriptional accessory protein [Streptococcus
pneumoniae SP14-BS69]
gi|15458408|gb|AAK99612.1| Toxin expression - transcriptional accessory protein [Streptococcus
pneumoniae R6]
gi|147759389|gb|EDK66381.1| Toxin expression - transcriptional accessory protein [Streptococcus
pneumoniae SP14-BS69]
Length = 715
Score = 36.8 bits (85), Expect = 0.98, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 307 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 362
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 363 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 414
Query: 120 QIL 122
L
Sbjct: 415 SEL 417
>gi|221231683|ref|YP_002510835.1| transcription accessory protein [Streptococcus pneumoniae ATCC
700669]
gi|220674143|emb|CAR68663.1| putative transcription accessory protein [Streptococcus pneumoniae
ATCC 700669]
Length = 709
Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|194398593|ref|YP_002037544.1| S1 RNA binding domain [Streptococcus pneumoniae G54]
gi|194358260|gb|ACF56708.1| S1 RNA binding domain [Streptococcus pneumoniae G54]
Length = 709
Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|332204911|gb|EGJ18976.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47901]
Length = 709
Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|312796107|ref|YP_004029029.1| transcription accessory protein (S1 RNA binding domain)
[Burkholderia rhizoxinica HKI 454]
gi|312167882|emb|CBW74885.1| Transcription accessory protein (S1 RNA binding domain)
[Burkholderia rhizoxinica HKI 454]
Length = 801
Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 19/108 (17%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTA 56
++DL+ + + + +D G R G +A+ D A P R+ +
Sbjct: 340 NLKDLLLAAPAGPRAVIGLDPGL-RTGVKVAVVDRTGKLLATDTIYPHE--PRRDWDGSL 396
Query: 57 LELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
L IG NG+ T +I R +
Sbjct: 397 ARLARLAQATQAELISIG-----NGTAS---RETDKLASELIARHPEL 436
>gi|225858705|ref|YP_002740215.1| S1 RNA binding domain protein [Streptococcus pneumoniae 70585]
gi|225720875|gb|ACO16729.1| S1 RNA binding domain protein [Streptococcus pneumoniae 70585]
Length = 709
Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|182683855|ref|YP_001835602.1| transcriptional regulator, putative [Streptococcus pneumoniae
CGSP14]
gi|307127540|ref|YP_003879571.1| transcriptional accessory protein [Streptococcus pneumoniae 670-6B]
gi|182629189|gb|ACB90137.1| transcriptional regulator, putative [Streptococcus pneumoniae
CGSP14]
gi|306484602|gb|ADM91471.1| transcriptional accessory protein [Streptococcus pneumoniae 670-6B]
Length = 715
Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 307 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 362
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 363 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 414
Query: 120 QIL 122
L
Sbjct: 415 SEL 417
>gi|148992962|ref|ZP_01822581.1| transcriptional regulator, putative [Streptococcus pneumoniae
SP9-BS68]
gi|168490278|ref|ZP_02714477.1| protein tex [Streptococcus pneumoniae SP195]
gi|147928414|gb|EDK79430.1| transcriptional regulator, putative [Streptococcus pneumoniae
SP9-BS68]
gi|183571410|gb|EDT91938.1| protein tex [Streptococcus pneumoniae SP195]
gi|332073238|gb|EGI83717.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17570]
Length = 709
Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|148984645|ref|ZP_01817913.1| pyruvate kinase [Streptococcus pneumoniae SP3-BS71]
gi|149010452|ref|ZP_01831823.1| transcriptional regulator, putative [Streptococcus pneumoniae
SP19-BS75]
gi|168490996|ref|ZP_02715139.1| protein tex [Streptococcus pneumoniae CDC0288-04]
gi|225861200|ref|YP_002742709.1| S1 RNA binding domain protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|298229397|ref|ZP_06963078.1| S1 RNA binding domain protein [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255859|ref|ZP_06979445.1| S1 RNA binding domain protein [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503083|ref|YP_003725023.1| S1 domain RNA-binding protein [Streptococcus pneumoniae
TCH8431/19A]
gi|147764933|gb|EDK71862.1| transcriptional regulator, putative [Streptococcus pneumoniae
SP19-BS75]
gi|147923036|gb|EDK74151.1| pyruvate kinase [Streptococcus pneumoniae SP3-BS71]
gi|183574580|gb|EDT95108.1| protein tex [Streptococcus pneumoniae CDC0288-04]
gi|225727709|gb|ACO23560.1| S1 RNA binding domain protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238678|gb|ADI69809.1| S1 domain RNA-binding protein [Streptococcus pneumoniae
TCH8431/19A]
gi|301799893|emb|CBW32471.1| putative transcription accessory protein [Streptococcus pneumoniae
OXC141]
gi|327389190|gb|EGE87535.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA04375]
gi|332202763|gb|EGJ16832.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41317]
Length = 709
Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|148997004|ref|ZP_01824658.1| transcriptional regulator, putative [Streptococcus pneumoniae
SP11-BS70]
gi|168575569|ref|ZP_02721505.1| protein tex [Streptococcus pneumoniae MLV-016]
gi|307067562|ref|YP_003876528.1| transcriptional accessory protein [Streptococcus pneumoniae AP200]
gi|147756704|gb|EDK63744.1| transcriptional regulator, putative [Streptococcus pneumoniae
SP11-BS70]
gi|183578556|gb|EDT99084.1| protein tex [Streptococcus pneumoniae MLV-016]
gi|306409099|gb|ADM84526.1| Transcriptional accessory protein [Streptococcus pneumoniae AP200]
Length = 709
Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|322375346|ref|ZP_08049859.1| S1 RNA binding domain protein [Streptococcus sp. C300]
gi|321279609|gb|EFX56649.1| S1 RNA binding domain protein [Streptococcus sp. C300]
Length = 709
Score = 36.8 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKRDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I ++ IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|328542586|ref|YP_004302695.1| cytochrome c oxidase, subunit I [polymorphum gilvum SL003B-26A1]
gi|326412332|gb|ADZ69395.1| Cytochrome c oxidase, subunit I [Polymorphum gilvum SL003B-26A1]
Length = 803
Score = 36.8 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + +D G R G+ A+ D + A PF R V +
Sbjct: 332 NLKDLLLAAPAGARATLGLDPGI-RTGVKVAVVDATGKLVDTATIYPFQPRNDVAGSRAT 390
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
LL+ I + IG NG+
Sbjct: 391 LLALIAKHKVGLIAIG-----NGTASRETDR 416
>gi|237820844|ref|ZP_04596689.1| S1 RNA binding domain protein [Streptococcus pneumoniae CCRI
1974M2]
Length = 725
Score = 36.8 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 317 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 372
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 373 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 424
Query: 120 QIL 122
L
Sbjct: 425 SEL 427
>gi|149007144|ref|ZP_01830808.1| S1 RNA binding domain [Streptococcus pneumoniae SP18-BS74]
gi|147761182|gb|EDK68149.1| S1 RNA binding domain [Streptococcus pneumoniae SP18-BS74]
Length = 709
Score = 36.8 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|183603130|ref|ZP_02964306.1| protein tex [Streptococcus pneumoniae CDC1087-00]
gi|183570991|gb|EDT91519.1| protein tex [Streptococcus pneumoniae CDC1087-00]
Length = 709
Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|332075520|gb|EGI85988.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17545]
Length = 709
Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|307708663|ref|ZP_07645126.1| toxin expression - transcriptional accessory protein [Streptococcus
mitis NCTC 12261]
gi|307615237|gb|EFN94447.1| toxin expression - transcriptional accessory protein [Streptococcus
mitis NCTC 12261]
Length = 709
Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|116516081|ref|YP_816286.1| S1 RNA-binding domain-containing protein [Streptococcus pneumoniae
D39]
gi|148988340|ref|ZP_01819787.1| S1 RNA binding domain [Streptococcus pneumoniae SP6-BS73]
gi|225856571|ref|YP_002738082.1| S1 RNA binding domain protein [Streptococcus pneumoniae P1031]
gi|237649296|ref|ZP_04523548.1| S1 RNA binding domain protein [Streptococcus pneumoniae CCRI 1974]
gi|116076657|gb|ABJ54377.1| S1 RNA binding domain [Streptococcus pneumoniae D39]
gi|147926021|gb|EDK77095.1| S1 RNA binding domain [Streptococcus pneumoniae SP6-BS73]
gi|225725987|gb|ACO21839.1| S1 RNA binding domain protein [Streptococcus pneumoniae P1031]
gi|332076190|gb|EGI86656.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41301]
Length = 709
Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|301794055|emb|CBW36456.1| putative transcription accessory protein [Streptococcus pneumoniae
INV104]
Length = 709
Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|289167924|ref|YP_003446193.1| transcriptional regulator [Streptococcus mitis B6]
gi|288907491|emb|CBJ22328.1| transcriptional regulator [Streptococcus mitis B6]
Length = 709
Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|225854413|ref|YP_002735925.1| S1 RNA binding domain protein [Streptococcus pneumoniae JJA]
gi|225723646|gb|ACO19499.1| S1 RNA binding domain protein [Streptococcus pneumoniae JJA]
Length = 709
Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|149019492|ref|ZP_01834811.1| S1 RNA binding domain [Streptococcus pneumoniae SP23-BS72]
gi|147930867|gb|EDK81847.1| S1 RNA binding domain [Streptococcus pneumoniae SP23-BS72]
Length = 709
Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|15900789|ref|NP_345393.1| transcriptional regulator, putative [Streptococcus pneumoniae
TIGR4]
gi|111657235|ref|ZP_01408005.1| hypothetical protein SpneT_02001548 [Streptococcus pneumoniae
TIGR4]
gi|303254587|ref|ZP_07340690.1| transcriptional regulator, putative [Streptococcus pneumoniae
BS455]
gi|303259816|ref|ZP_07345791.1| transcriptional regulator, putative [Streptococcus pneumoniae
SP-BS293]
gi|303262231|ref|ZP_07348175.1| transcriptional regulator, putative [Streptococcus pneumoniae
SP14-BS292]
gi|303264652|ref|ZP_07350570.1| transcriptional regulator, putative [Streptococcus pneumoniae
BS397]
gi|303267582|ref|ZP_07353426.1| transcriptional regulator, putative [Streptococcus pneumoniae
BS457]
gi|303269819|ref|ZP_07355566.1| transcriptional regulator, putative [Streptococcus pneumoniae
BS458]
gi|14972382|gb|AAK75033.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4]
gi|301801754|emb|CBW34464.1| putative transcription accessory protein [Streptococcus pneumoniae
INV200]
gi|302598439|gb|EFL65482.1| transcriptional regulator, putative [Streptococcus pneumoniae
BS455]
gi|302636554|gb|EFL67045.1| transcriptional regulator, putative [Streptococcus pneumoniae
SP14-BS292]
gi|302639021|gb|EFL69481.1| transcriptional regulator, putative [Streptococcus pneumoniae
SP-BS293]
gi|302640646|gb|EFL71046.1| transcriptional regulator, putative [Streptococcus pneumoniae
BS458]
gi|302642880|gb|EFL73183.1| transcriptional regulator, putative [Streptococcus pneumoniae
BS457]
gi|302645739|gb|EFL75968.1| transcriptional regulator, putative [Streptococcus pneumoniae
BS397]
Length = 709
Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|326316623|ref|YP_004234295.1| Tex-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323373459|gb|ADX45728.1| Tex-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 788
Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 15/101 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G +A+ D + A P R+ +
Sbjct: 323 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWEGSLHT 381
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
L + + IG NG+ T +++
Sbjct: 382 LARLVQKHGVQLVAIG-----NGTAS---RETDKLAADLLK 414
>gi|307709284|ref|ZP_07645742.1| protein tex [Streptococcus mitis SK564]
gi|307619867|gb|EFN98985.1| protein tex [Streptococcus mitis SK564]
Length = 709
Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I ++ IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|120612074|ref|YP_971752.1| RNA-binding S1 domain-containing protein [Acidovorax citrulli
AAC00-1]
gi|120590538|gb|ABM33978.1| RNA binding S1 domain protein [Acidovorax citrulli AAC00-1]
Length = 788
Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 15/101 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G +A+ D + A P R+ +
Sbjct: 323 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWEGSLHT 381
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
L + + IG NG+ T +++
Sbjct: 382 LARLVQKHGVQLVAIG-----NGTAS---RETDKLAADLLK 414
>gi|332201372|gb|EGJ15442.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47368]
Length = 709
Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|296876119|ref|ZP_06900173.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
15912]
gi|296432830|gb|EFH18623.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
15912]
Length = 718
Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D A P ++ Q +L S I
Sbjct: 315 KGRVVLGFDPAF---RTGAKLAVVDETGKMLATQVIYPVAPAKPAQIEQAKKDLSSLIKE 371
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 372 FGVEIIAIG-----NGTAS---RESEAFVAEVLHDHPGVRYVIVNESGASVYSASEL 420
>gi|121533952|ref|ZP_01665778.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1]
gi|121307463|gb|EAX48379.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1]
Length = 723
Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 22/125 (17%)
Query: 16 NQPIASIDLGTKRIGL--A-ISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAA 70
+ +D G R G A +S G A +L + E L+ I + +
Sbjct: 317 GHTVMGLDPG-YRTGCKMAVVSPTGTVLATGTLYLTHSDAQRERAVKEALATIESYGVTL 375
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF--WDERLTTV-----SAQQILI 123
IG NG+ FV +I+ +P + +E +V A+ L
Sbjct: 376 IAIG-----NGTASYETE---EFVARLINDH-QLPIHYLIVNEAGASVYSASKLAKDELP 426
Query: 124 DMNVS 128
D++VS
Sbjct: 427 DLDVS 431
>gi|118364982|ref|XP_001015712.1| hypothetical protein TTHERM_00077710 [Tetrahymena thermophila]
gi|89297479|gb|EAR95467.1| hypothetical protein TTHERM_00077710 [Tetrahymena thermophila
SB210]
Length = 533
Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 30/114 (26%)
Query: 44 RPFLVRKKVTQTA------LELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97
+ +T +L I EN+ +IG F +
Sbjct: 2 LETIETAGDARTFNNPIVIAKLKKHIQKENVKGLVIG---------------ATNF-KRL 45
Query: 98 IDRKVYVPFVFWDERLTTVSAQQILID------MNVSRKKRIQKVDSIAAALIL 145
+ +Y DE TT +++QIL + N++ K+ D A++L+L
Sbjct: 46 LINLIYQNIKKVDESFTTFASKQILEEIAFNYNENLNLKQHKDLKD--ASSLLL 97
>gi|77164807|ref|YP_343332.1| RNA binding S1 [Nitrosococcus oceani ATCC 19707]
gi|254434282|ref|ZP_05047790.1| S1 RNA binding domain protein [Nitrosococcus oceani AFC27]
gi|76883121|gb|ABA57802.1| RNA binding S1 [Nitrosococcus oceani ATCC 19707]
gi|207090615|gb|EDZ67886.1| S1 RNA binding domain protein [Nitrosococcus oceani AFC27]
Length = 765
Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 14/92 (15%)
Query: 17 QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+PI +D G R G +A+ D + A P +K+ L S + +
Sbjct: 322 RPILGLDPGF-RTGVKVAVIDETGKLLETATIYPHPPQKQWDAAIDILSSLLKKHRVELV 380
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
IG NG+ T V ++ +
Sbjct: 381 GIG-----NGTAS---RETEQLVVELLKKFPQ 404
>gi|306825121|ref|ZP_07458463.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304432557|gb|EFM35531.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 709
Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I ++ IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|331266273|ref|YP_004325903.1| S1 RNA binding domain protein [Streptococcus oralis Uo5]
gi|326682945|emb|CBZ00562.1| S1 RNA binding domain protein [Streptococcus oralis Uo5]
Length = 732
Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 324 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 379
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 380 SDLIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 431
Query: 120 QIL 122
L
Sbjct: 432 SEL 434
>gi|306833951|ref|ZP_07467075.1| YhgF like protein [Streptococcus bovis ATCC 700338]
gi|304423952|gb|EFM27094.1| YhgF like protein [Streptococcus bovis ATCC 700338]
Length = 708
Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P + K+ Q+ +L I T
Sbjct: 305 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPASQAKIEQSKKDLAELIRT 361
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV + V +V +E +V + L
Sbjct: 362 YGVEIIAIG-----NGTAS---RESEAFVAQALKDFPDVSYVIVNESGASVYSASEL 410
>gi|163867791|ref|YP_001608995.1| hypothetical protein Btr_0550 [Bartonella tribocorum CIP 105476]
gi|161017442|emb|CAK01000.1| phage-related conserved hypothetical protein [Bartonella
tribocorum CIP 105476]
Length = 159
Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
Q I +DLGTK G A+ D ++ + L F
Sbjct: 6 QTILCLDLGTKT-GWALCDADGFITSDTEHFQSRRFEGGGMRYLRFKK 52
>gi|225181236|ref|ZP_03734681.1| RNA binding S1 domain protein [Dethiobacter alkaliphilus AHT 1]
gi|225168016|gb|EEG76822.1| RNA binding S1 domain protein [Dethiobacter alkaliphilus AHT 1]
Length = 713
Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 15/114 (13%)
Query: 15 PNQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIA 69
P + I +D G R G LA D + A P K +A + I ++
Sbjct: 314 PGKRILGLDPG-YRTGCKLACVDQTGKLLETAVIYPTPPLNKKEASAAVVKKLIEKHDLN 372
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQIL 122
IG NG+ G + F+ +I + + +E +V + L
Sbjct: 373 TVAIG-----NGTAG---RESEEFIAEVISEMNREIEYTVVNEAGASVYSASKL 418
>gi|139438397|ref|ZP_01771913.1| Hypothetical protein COLAER_00903 [Collinsella aerofaciens ATCC
25986]
gi|133775936|gb|EBA39756.1| Hypothetical protein COLAER_00903 [Collinsella aerofaciens ATCC
25986]
Length = 261
Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 18/113 (15%)
Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
A P + R + + + +I+ + P M+G + RV + RA V
Sbjct: 113 IALPL-TIARTNSAEISTRVQDVAARLSISQVLDKYPYQMSGGQQQRVAAARALV----- 166
Query: 100 RKVYVPFVFWDE---RLTTVSAQQILIDM--NVSRKKRIQKV----DSIAAAL 143
+ DE L + SA ++L++ ++R+ R + DS AA+
Sbjct: 167 --TDPTMIMADEPTGALDSKSA-RLLLESLEALNRRLRATVLMVTHDSFAASY 216
>gi|310778062|ref|YP_003966395.1| ABC transporter related protein [Ilyobacter polytropus DSM 2926]
gi|309747385|gb|ADO82047.1| ABC transporter related protein [Ilyobacter polytropus DSM 2926]
Length = 356
Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 40 FAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97
A+ R K + + ++L + ++ A + P M+G + RV RA + N
Sbjct: 103 IAYGLKVQKRPKAEINERVEKILKLMKMDDFATRV---PSQMSGGQQQRVSLARALIMNS 159
Query: 98 IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+ +DE L+ + A+ L + RK + +
Sbjct: 160 G-------VLLFDEPLSNLDAKLRLHMRDEIRKLQKEV 190
>gi|314934887|ref|ZP_07842246.1| nickel ABC transporter, periplasmic nickel-binding protein
[Staphylococcus caprae C87]
gi|313652817|gb|EFS16580.1| nickel ABC transporter, periplasmic nickel-binding protein
[Staphylococcus caprae C87]
Length = 532
Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 30/104 (28%)
Query: 32 AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
A+SD R A + R K++Q ++G E P
Sbjct: 292 AVSDKTVRQALGY-MVNRDKISQDI----------------------LDGQEKPATQL-- 326
Query: 92 AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
F N+ D +P +D T A+ +L + K
Sbjct: 327 -FAKNVTDINFNMPTRQFD----TKKAEALLDEAGWKLTKEKNV 365
>gi|323697522|ref|ZP_08109434.1| ABC transporter related protein [Desulfovibrio sp. ND132]
gi|323457454|gb|EGB13319.1| ABC transporter related protein [Desulfovibrio desulfuricans ND132]
Length = 373
Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
A P + ++ + T I + LP M+G E RV RA +
Sbjct: 105 IASPL-VIRKESGEVIRERVEGIAKTLQITHVLGRLPKTMSGGEKQRVALGRALI----- 158
Query: 100 RKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQ 134
R + DE L+++ A+ +I + + R +R Q
Sbjct: 159 RTPQL--FLLDEPLSSLDAKLRIELRAELRRMQREQ 192
>gi|319788548|ref|YP_004148023.1| Tex-like protein [Pseudoxanthomonas suwonensis 11-1]
gi|317467060|gb|ADV28792.1| Tex-like protein [Pseudoxanthomonas suwonensis 11-1]
Length = 787
Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 19/108 (17%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRRF-AH----PRPFLVRKKVTQTA 56
++DL+ + + + +D G R G +A+ D + A P R++ Q+
Sbjct: 318 NLKDLLLAAPAGPKAVLGLDPGL-RTGVKVAVVDATGKLVATDTIYPHE--PRRQWDQSL 374
Query: 57 LELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
L T + IG NG+ T +++ +
Sbjct: 375 ASLRKLCITHGVQLVAIG-----NGTAS---RETDKLAGDLLKLVPEL 414
>gi|320547221|ref|ZP_08041514.1| YhgF like protein [Streptococcus equinus ATCC 9812]
gi|320448109|gb|EFW88859.1| YhgF like protein [Streptococcus equinus ATCC 9812]
Length = 710
Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P + K+ Q+ +L I +
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVPPASQAKIEQSKKDLAELIRS 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 YGIEIIAIG-----NGTAS---RESEAFVAQVLKDFPDVSYVIVNESGASVYSASEL 412
>gi|89901260|ref|YP_523731.1| RNA-binding S1 [Rhodoferax ferrireducens T118]
gi|89345997|gb|ABD70200.1| RNA binding S1 [Rhodoferax ferrireducens T118]
Length = 807
Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 15/112 (13%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G+ A+ D + A P RK +
Sbjct: 340 NLRDLLLAAPAGPRVVLGLDPGI-RTGVKVAVVDATGKLVDTATVYPHEPRKDWDGSLHI 398
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWD 110
L ++ IG NG+ T ++I D
Sbjct: 399 LARLCEKHGVSLIAIG-----NGTAS---RETDKLAADLIKLMAKSSERLMD 442
>gi|297185087|gb|ADI21196.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09]
Length = 157
Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 19 IASIDLGTKR-IGLAISDPGRRFAHPRPFL 47
I + D KR IG+A+ A P L
Sbjct: 123 ILAFDXXXKRRIGVAVGQDITNSASPLGTL 152
>gi|270292646|ref|ZP_06198857.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143]
gi|270278625|gb|EFA24471.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143]
Length = 709
Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASSRQIEEAKRDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I ++ IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|255022353|ref|ZP_05294339.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
J1-208]
Length = 1010
Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 14/120 (11%)
Query: 31 LAISDPGRRFA---HPRPFLVRKKVTQ-----TALELLSFITTENIAAFIIG---LPLNM 79
LAI+ R A P + T+ T+ E+ I E + G +P
Sbjct: 24 LAITAEERMIAREVTPEKSVENTDNTKGEAETTSEEVEPIIKEETPEEIVEGKVEVPTTG 83
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G + + + + Y F DE L+ + A+ +V++K +D +
Sbjct: 84 GGMASKNLKQMK--ITELQQESTYATV-FPDEALSPIIAKAATGSDDVTQKVTQTALDKV 140
>gi|210630872|ref|ZP_03296646.1| hypothetical protein COLSTE_00531 [Collinsella stercoris DSM 13279]
gi|210160306|gb|EEA91277.1| hypothetical protein COLSTE_00531 [Collinsella stercoris DSM 13279]
Length = 835
Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 13/113 (11%)
Query: 15 PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69
+ ++D G R G +A+ D + P R+ V T ELL I
Sbjct: 429 RGARVIALDPG-YRAGCKVAVLDEYGKLLDHTILYPTPPRRDVAGTKRELLRLTRKHRIN 487
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
++G NG+ + + + + +E +V + L
Sbjct: 488 TIVVG-----NGTASRETEEV--VAAFIAESAPELRYTIVNEAGASVYSASKL 533
>gi|322387834|ref|ZP_08061442.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779]
gi|321141336|gb|EFX36833.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779]
Length = 709
Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKRDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + +FV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESESFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|241864906|gb|ACS68536.1| low-specificity threonine aldolase [uncultured bacterium FLS18]
Length = 407
Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 5 LIEDLVKSLKPN----QPIASIDLGTKRIGLAISDPGRRFAH 42
I+D ++ K + I +D GTKR G+A+ P A
Sbjct: 155 TIDDFNEAAKAAGIELRVILDLDTGTKRTGIAVGKPALALAQ 196
>gi|116515277|ref|YP_802906.1| YggF [Buchnera aphidicola str. Cc (Cinara cedri)]
gi|122285327|sp|Q056Y6|RUVX_BUCCC RecName: Full=Putative Holliday junction resolvase
gi|116257131|gb|ABJ90813.1| putative Holliday jonction resolvase [Buchnera aphidicola str. Cc
(Cinara cedri)]
Length = 130
Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 42 HPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK 101
P + K ++ I +IG P +++ I +K
Sbjct: 26 TPIKSIFNNKKKNFWNQINIIINMWKPKYIVIGYPYK----IKKKINKKIKKFAKEIKKK 81
Query: 102 VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
+ F DE +T A L + +K + SI+A +IL +
Sbjct: 82 FKINFFLCDENYSTTEALLFLKEKKKKKKYC---LHSISAKIILDSWI 126
>gi|312865889|ref|ZP_07726110.1| Tex-like protein N-terminal domain protein [Streptococcus downei
F0415]
gi|311098293|gb|EFQ56516.1| Tex-like protein N-terminal domain protein [Streptococcus downei
F0415]
Length = 710
Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P + K+ ++ EL + T
Sbjct: 307 KGKVVLGFDPAF---RTGAKLAVVDQTGKLLTTHVIYPVAPASQAKIVKSKEELAELLRT 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV +++ V +V +E +V + L
Sbjct: 364 YQVEIIAIG-----NGTAS---RESEAFVADILKDFPEVSYVIVNESGASVYSASEL 412
>gi|121594077|ref|YP_985973.1| RNA-binding S1 domain-containing protein [Acidovorax sp. JS42]
gi|120606157|gb|ABM41897.1| RNA binding S1 domain protein [Acidovorax sp. JS42]
Length = 798
Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G +A+ D + A P R+ +
Sbjct: 330 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDRTGKLVETATVYPHEPRRDWDGSLAT 388
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
L + IG NG+ T +I
Sbjct: 389 LGRLCMKHGVQLIAIG-----NGTAS---RETDKLAAELIK 421
>gi|312879272|ref|ZP_07739072.1| ferredoxin [Aminomonas paucivorans DSM 12260]
gi|310782563|gb|EFQ22961.1| ferredoxin [Aminomonas paucivorans DSM 12260]
Length = 248
Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 14/53 (26%)
Query: 76 PLNMNG----SEGPRVHSTRAFVHNMIDRKVYV-PFVFW---------DERLT 114
P+N +G ++ PRV R FV ++ R+ + P + DERL+
Sbjct: 67 PVNEDGLEVLTDSPRVREARRFVIRLLLRRNALSPVIQQLAREEGVEPDERLS 119
>gi|269123065|ref|YP_003305642.1| spermidine/putrescine ABC transporter ATPase subunit
[Streptobacillus moniliformis DSM 12112]
gi|268314391|gb|ACZ00765.1| spermidine/putrescine ABC transporter ATPase subunit
[Streptobacillus moniliformis DSM 12112]
Length = 354
Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 40 FAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97
A+ R +++ Q ++L + E+ A I P M+G + RV RA +
Sbjct: 103 IAYGLKIQKRPKEEIKQRVDKILKLMKMEDFAERI---PSQMSGGQQQRVSLARALI--- 156
Query: 98 IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+ + +DE L+ + A+ L + RK +++
Sbjct: 157 ----MDSEVLLFDEPLSNLDAKLRLHMRDEIRKLQLEV 190
>gi|298504349|gb|ADI83072.1| S1 RNA-binding domain-containing transcriptional accessory protein
[Geobacter sulfurreducens KN400]
Length = 761
Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLV----RKKVTQTALELLSFITTENIA 69
+ + +D G R G LA D RF KV E L + I
Sbjct: 323 GKRVLGVDPGL-RTGSKLAAVDGTGRFLEHVTIYPHAGGEGKVAAAKREFLRLVECHGIE 381
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124
+G NG+ G + F + + +P V E +V SA +I +
Sbjct: 382 MVAVG-----NGTAGREMEQ---FAKETLAEGGKRIPVVMVSEAGASVYSASEIARE 430
>gi|222111189|ref|YP_002553453.1| resolvase rnase h domain-containing protein [Acidovorax ebreus
TPSY]
gi|221730633|gb|ACM33453.1| Resolvase RNase H domain protein [Acidovorax ebreus TPSY]
Length = 798
Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G +A+ D + A P R+ +
Sbjct: 330 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDRTGKLVETATVYPHEPRRDWDGSLAT 388
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
L + IG NG+ T +I
Sbjct: 389 LGRLCMKHGVQLIAIG-----NGTAS---RETDKLAAELIK 421
>gi|297624691|ref|YP_003706125.1| hypothetical protein Trad_2474 [Truepera radiovictrix DSM 17093]
gi|297165871|gb|ADI15582.1| conserved hypothetical protein [Truepera radiovictrix DSM 17093]
Length = 130
Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 23/103 (22%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G + IG+A +P R ++ T +L + + ++G
Sbjct: 2 IVALDPG-RNIGVAFVNPLGRLV--YRTII------TLGDLETLLIPAG-TTVVVG---- 47
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+G+ V + F DE T++ A+ +
Sbjct: 48 -DGTGSEAVQRVLR-ARALS-------FALVDETGTSLEARAL 81
>gi|293365555|ref|ZP_06612264.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
gi|307703510|ref|ZP_07640452.1| protein tex [Streptococcus oralis ATCC 35037]
gi|291315923|gb|EFE56367.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
gi|307622917|gb|EFO01912.1| protein tex [Streptococcus oralis ATCC 35037]
Length = 709
Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I ++ IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 SDLIGQYSVEIIAIG-----NGTAS---RESEAFVAEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|329851206|ref|ZP_08265963.1| hypothetical protein ABI_40470 [Asticcacaulis biprosthecum C19]
gi|328840052|gb|EGF89624.1| hypothetical protein ABI_40470 [Asticcacaulis biprosthecum C19]
Length = 357
Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
G+ R+ + A + R+ P +FWDE + A++ L +
Sbjct: 177 GTGKTRIDACLAMSRQLQKRENNPPVIFWDEGWSPYEARKFLEAEGL 223
>gi|305663114|ref|YP_003859402.1| carbohydrate ABC transporter ATP-binding protein, CUT1 family
[Ignisphaera aggregans DSM 17230]
gi|304377683|gb|ADM27522.1| carbohydrate ABC transporter ATP-binding protein, CUT1 family
[Ignisphaera aggregans DSM 17230]
Length = 367
Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 11/98 (11%)
Query: 40 FAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96
A P R+ + ++ I + P ++G E RV RA V
Sbjct: 96 IAFPLIARKRQLKISDDEIRKRVVEVANMLGIEHLLNRKPSQLSGGEQQRVALARALVRQ 155
Query: 97 MIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRI 133
DE L+ + A+ ++L+ + R ++
Sbjct: 156 -------PKVFLMDEPLSNLDAKLRLLMRAELKRLQKK 186
>gi|39995345|ref|NP_951296.1| S1 RNA-binding domain-containing protein [Geobacter sulfurreducens
PCA]
gi|39982107|gb|AAR33569.1| S1 RNA binding domain protein [Geobacter sulfurreducens PCA]
Length = 761
Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLV----RKKVTQTALELLSFITTENIA 69
+ + +D G R G LA D RF KV E L + I
Sbjct: 323 GKRVLGVDPGL-RTGSKLAAVDGTGRFLEHVTIYPHAGGEGKVAAAKREFLRLVECHGIE 381
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124
+G NG+ G + F + + +P V E +V SA +I +
Sbjct: 382 MVAVG-----NGTAGREMEQ---FAKETLAEGGKRIPVVMVSEAGASVYSASEIARE 430
>gi|308178439|ref|YP_003917845.1| transcriptional accessory protein [Arthrobacter arilaitensis Re117]
gi|307745902|emb|CBT76874.1| putative transcriptional accessory protein [Arthrobacter
arilaitensis Re117]
Length = 809
Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 21/132 (15%)
Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFI 63
L+ + N+ + +D G R G +A+ D + A P K ++ L+
Sbjct: 340 LLAAPAGNKAVLGLDPGL-RTGVKVAVVDLTGKSVETATIYPHAPANKWNESLAVLIKLA 398
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF--VFWDERLTTV----- 116
+ +G NG+ G T +I V E +V
Sbjct: 399 KKHGTSLIAVG-----NGTAG---RETDRLAAEVIKELGGAGVDRVIVSEAGASVYSASE 450
Query: 117 SAQQILIDMNVS 128
A Q L DM+VS
Sbjct: 451 LASQELPDMDVS 462
>gi|307706709|ref|ZP_07643514.1| protein tex [Streptococcus mitis SK321]
gi|307617794|gb|EFN96956.1| protein tex [Streptococcus mitis SK321]
Length = 709
Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + +L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADSIGQYGVEIIAIG-----NGTAS---RESEAFVAEVLKEFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|262282625|ref|ZP_06060393.1| S1 RNA binding domain-containing protein [Streptococcus sp.
2_1_36FAA]
gi|262261916|gb|EEY80614.1| S1 RNA binding domain-containing protein [Streptococcus sp.
2_1_36FAA]
Length = 710
Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKSAQIEASKKELSELIEE 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ +V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPHVSYVIVNESGASVYSASEL 412
>gi|310796681|gb|EFQ32142.1| CPSF A subunit region [Glomerella graminicola M1.001]
Length = 1163
Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
Query: 31 LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHST 90
+A S R A + R+ + SF + I ++G P +++GS
Sbjct: 771 VAYSPALR--AFGIGTIHRELTNNEEVVTSSFQLVDEIVLGVVGKPFHLDGSIS--AEMV 826
Query: 91 RAFVHNMIDRKVYVPFVFWDERL---TTVSAQQILIDMNVSRKK 131
+ + + + P ER T+ A + + ++ +
Sbjct: 827 ESVIRAELPDSMGQPA----ERFIVGTSYLADPDIDESGDTKGR 866
>gi|156375168|ref|XP_001629954.1| predicted protein [Nematostella vectensis]
gi|156216965|gb|EDO37891.1| predicted protein [Nematostella vectensis]
Length = 501
Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 33 ISDPGRRFAHPRPFLVRKKVTQTALEL-LSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
I DP A P + + + LE+ E + ++ M P + R
Sbjct: 233 IGDPLDIIASG-PTVPDQSNPRDCLEIFRKLKAEEKVPKSVMQYLQGMADQPKPESQNNR 291
Query: 92 AFVH 95
F +
Sbjct: 292 EFAN 295
>gi|295394635|ref|ZP_06804854.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
[Brevibacterium mcbrellneri ATCC 49030]
gi|294972528|gb|EFG48384.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
[Brevibacterium mcbrellneri ATCC 49030]
Length = 740
Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 100 RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
+ VP DER +TV A++ + + S + VD A
Sbjct: 379 HRFDVP--GVDERFSTVRARRAVDNSGASIRLDAAYVDEAA 417
>gi|189425601|ref|YP_001952778.1| RNA binding S1 domain protein [Geobacter lovleyi SZ]
gi|189421860|gb|ACD96258.1| RNA binding S1 domain protein [Geobacter lovleyi SZ]
Length = 762
Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 13/101 (12%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ + ID G R G LA D RF P +V Q +LL + I
Sbjct: 323 GRRVLGIDPGL-RAGSKLAAVDQTGRFLEHVTIYPHTGAGRVDQARADLLRLVEAHGIEM 381
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDE 111
IG NG+ G + + ++P V E
Sbjct: 382 IAIG-----NGTAGREMELFTK--ETLAKAGKHLPVVMVSE 415
>gi|210620543|ref|ZP_03292091.1| hypothetical protein CLOHIR_00034 [Clostridium hiranonis DSM 13275]
gi|210155257|gb|EEA86263.1| hypothetical protein CLOHIR_00034 [Clostridium hiranonis DSM 13275]
Length = 712
Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ + D G R G +A+ D +F A + K ++ EL+ I NI
Sbjct: 311 GKNVMGFDPGI-RTGCKIAVVDRNGKFLDSAVVFVTGSQAKKSEAEKELIGLIKKHNIDI 369
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMID-RKVYVPFVFWDERLTTVSAQQILID 124
IG NG+ + AFV MI + V +V E +V + L
Sbjct: 370 IAIG-----NGTAS---RESEAFVAKMIKDNNLDVKYVIVSEAGASVYSASELAA 416
>gi|218767283|ref|YP_002341795.1| 3-deoxy-D-manno-octulosonic-acid transferase [Neisseria
meningitidis Z2491]
gi|121051291|emb|CAM07567.1| 3-deoxy-D-manno-octulosonic-acid transferase [Neisseria
meningitidis Z2491]
gi|319409548|emb|CBY89835.1| 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)
[Neisseria meningitidis WUE 2594]
Length = 423
Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 18/87 (20%)
Query: 26 TKRIG---LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
KRIG +A+ + A +LL+ A ++ +P +
Sbjct: 222 EKRIGDRQVAVC----------GSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHP--- 268
Query: 83 EGPRV--HSTRAFVHNMIDRKVYVPFV 107
E + + + F + R +P
Sbjct: 269 EHFQTVFETVKRFGFKVQRRSDGLPVE 295
>gi|325129177|gb|EGC52022.1| 3-deoxy-D-manno-octulosonic-acid transferase [Neisseria
meningitidis N1568]
Length = 423
Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 18/87 (20%)
Query: 26 TKRIG---LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
KRIG +A+ + A +LL+ A ++ +P +
Sbjct: 222 EKRIGDRQVAVC----------GSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHP--- 268
Query: 83 EGPRV--HSTRAFVHNMIDRKVYVPFV 107
E + + + F + R +P
Sbjct: 269 EHFQTVFETVKRFGFKVQRRSDGLPVE 295
>gi|157738220|ref|YP_001490904.1| S1 RNA-binding domain-containing protein [Arcobacter butzleri
RM4018]
gi|157700074|gb|ABV68234.1| S1 RNA binding domain protein [Arcobacter butzleri RM4018]
Length = 702
Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAA 70
NQ I +D G K G LA+ D A P ++ + ++ +L I I
Sbjct: 315 NQMILGMDPGYKT-GCKLAVIDENGLYLDSAVIYPTKPKEDIVSSSKVVLDLIKKYKITT 373
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDR 100
IG NG+ T F++ +I +
Sbjct: 374 IAIG-----NGTAS---RETANFINELIKQ 395
>gi|313892334|ref|ZP_07825926.1| conserved hypothetical protein [Dialister microaerophilus UPII
345-E]
gi|313119193|gb|EFR42393.1| conserved hypothetical protein [Dialister microaerophilus UPII
345-E]
Length = 144
Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 23/137 (16%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I SID G+++ G+A+ + + + + + E+ I IG
Sbjct: 2 ILSIDPGSEKTGIAVVKKDGNLVM-KKIIKTECLEE---EIKILSKKFEIIETAIG---- 53
Query: 79 MNGSEGPRVH-STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---- 133
NG+ + M +P DE+ TT +Q N + +
Sbjct: 54 -NGTHHKNLEKRIEKLYEEMKKE---IPISIVDEKYTTEIGEQWYKKANPPKGWKRIIPF 109
Query: 134 ------QKVDSIAAALI 144
+ VD A +I
Sbjct: 110 GMRTVDKPVDDYVAWVI 126
>gi|194366186|ref|YP_002028796.1| RNA binding S1 domain-containing protein [Stenotrophomonas
maltophilia R551-3]
gi|194348990|gb|ACF52113.1| RNA binding S1 domain protein [Stenotrophomonas maltophilia R551-3]
Length = 795
Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 16/93 (17%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRRF-AHPRPFL----VRKKVTQTA 56
++DL+ + + + +D G R G +A+ D + A + R++ Q+
Sbjct: 321 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKIAVVDATGKLVAT--ETIYPHEPRRQWEQSL 377
Query: 57 LELLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
+ N+ IG NG+
Sbjct: 378 QTIKQLCAKHNVELIAIG-----NGTASRETDK 405
>gi|308388240|gb|ADO30560.1| 3-deoxy-D-manno-octulosonic-acid transferase [Neisseria
meningitidis alpha710]
Length = 423
Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 18/87 (20%)
Query: 26 TKRIG---LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
KRIG +A+ + A +LL+ A ++ +P +
Sbjct: 222 EKRIGDRQVAVC----------GSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHP--- 268
Query: 83 EGPRV--HSTRAFVHNMIDRKVYVPFV 107
E + + + F + R +P
Sbjct: 269 EHFQTVFETVKRFGFKVQRRSDGLPVE 295
>gi|296417552|ref|XP_002838418.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634354|emb|CAZ82609.1| unnamed protein product [Tuber melanosporum]
Length = 667
Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISD 35
S + I +D GT G+A D
Sbjct: 2 SSSKQRLIIGLDYGTTYTGVAFCD 25
>gi|315636507|ref|ZP_07891743.1| S1 RNA binding domain protein [Arcobacter butzleri JV22]
gi|315479156|gb|EFU69853.1| S1 RNA binding domain protein [Arcobacter butzleri JV22]
Length = 701
Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAA 70
NQ I +D G K G LA+ D A P ++ + ++ +L I I
Sbjct: 315 NQVILGMDPGYKT-GCKLAVIDENGLYLDSAVIYPTKPKEDIVSSSKVVLDLIKKYKITT 373
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDR 100
IG NG+ T F++ +I +
Sbjct: 374 IAIG-----NGTAS---RETANFINELIKQ 395
>gi|322411371|gb|EFY02279.1| transcription accessory protein [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 710
Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LAI D A P + K+ L I T
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAIVDQTGKLLATQVIYPVAPASQTKIQAAKETLAQLIET 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I IG NG+ + AFV +++ +V +E +V + L
Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKNFPNTSYVIVNESGASVYSASEL 412
>gi|297571329|ref|YP_003697103.1| phosphofructokinase [Arcanobacterium haemolyticum DSM 20595]
gi|296931676|gb|ADH92484.1| phosphofructokinase [Arcanobacterium haemolyticum DSM 20595]
Length = 406
Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 9/71 (12%)
Query: 44 RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP---------RVHSTRAFV 94
+ TA +L +++ + ++GLP ++ P F
Sbjct: 116 LHTIGGDDTNTTAADLAAYLHENDYELTVVGLPKTIDNDIVPIRQSLGAYTAAEQAAKFA 175
Query: 95 HNMIDRKVYVP 105
N+I P
Sbjct: 176 QNVIGEHRSNP 186
>gi|260655132|ref|ZP_05860620.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1]
gi|260630054|gb|EEX48248.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1]
Length = 156
Score = 34.9 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 39/159 (24%)
Query: 19 IASIDLGTKRIG-LAISDPGRRFAHPRPFLVRKKVTQTALELLS-------------FIT 64
+ ++D G ++G A +D G L+ K LL+
Sbjct: 2 LLAVDPGRDKVGWAAGTDRGELIGSG--ILLGKSAPAGLKALLAGGPRPADCTVNEGSWP 59
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
E A ++G NG+ F ++ P DE+ TT+ A+ +
Sbjct: 60 AERPRAVLLG-----NGTWSD------KF-RELLLGLGASPV-LVDEKNTTLQARSLYWG 106
Query: 125 MNVSRKKRI----------QKVDSIAAALILQEVLDRIS 153
++ R R + +D +AA IL+ L S
Sbjct: 107 IHPPRSWRRLIPLSLQTPPRPLDDLAALCILRRYLQSGS 145
>gi|332362463|gb|EGJ40263.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1056]
Length = 710
Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKSAQIEASKKELSDLIEQ 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412
>gi|322385014|ref|ZP_08058664.1| S1 RNA binding domain protein [Streptococcus cristatus ATCC 51100]
gi|321270924|gb|EFX53834.1| S1 RNA binding domain protein [Streptococcus cristatus ATCC 51100]
Length = 710
Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412
>gi|229820397|ref|YP_002881923.1| phosphofructokinase [Beutenbergia cavernae DSM 12333]
gi|229566310|gb|ACQ80161.1| phosphofructokinase [Beutenbergia cavernae DSM 12333]
Length = 408
Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 44 RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP---------RVHSTRAFV 94
+ TA +L ++ + ++GLP ++ P F
Sbjct: 116 LHTIGGDDTNTTAADLAHYLEEHDYGLTVVGLPKTIDNDIVPIRQSLGAHTAAEQASEFA 175
Query: 95 HNMIDRKVYVP 105
N+I P
Sbjct: 176 QNIIGEHRSNP 186
>gi|300113866|ref|YP_003760441.1| Tex-like protein protein-like protein [Nitrosococcus watsonii
C-113]
gi|299539803|gb|ADJ28120.1| Tex-like protein protein-like protein [Nitrosococcus watsonii
C-113]
Length = 786
Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 14/93 (15%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAA 70
++P+ +D G R G +A+ D + A P +K+ L S + +
Sbjct: 341 SRPVLGLDPGF-RTGVKVAVIDKTGKLLETATIYPHPPQKQWDAAINTLSSLLQKHGVEL 399
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
IG NG+ T V ++ +
Sbjct: 400 VGIG-----NGTAS---RETEQLVAELLKKFPQ 424
>gi|292491394|ref|YP_003526833.1| RNA binding S1 domain protein [Nitrosococcus halophilus Nc4]
gi|291579989|gb|ADE14446.1| RNA binding S1 domain protein [Nitrosococcus halophilus Nc4]
Length = 762
Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 21/124 (16%)
Query: 17 QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+P+ +D G R G+ A+ D + A P +K+ + L + +
Sbjct: 322 RPVMGLDPGF-RTGVKAAVIDQTGKLLETATIYPHPPQKQWEASMDTLSGLVKKHQVELI 380
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY--VPFVFWDERLTTVS-----AQQILID 124
IG NG+ T V ++ ++ + + E +V A Q L +
Sbjct: 381 SIG-----NGTAS---RETEQLVTELLKKEPEFKLQKLMVSEAGASVYSASEFAAQELPE 432
Query: 125 MNVS 128
++VS
Sbjct: 433 VDVS 436
>gi|332367155|gb|EGJ44891.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1059]
Length = 710
Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412
>gi|322420516|ref|YP_004199739.1| Tex-like protein [Geobacter sp. M18]
gi|320126903|gb|ADW14463.1| Tex-like protein [Geobacter sp. M18]
Length = 756
Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 15/102 (14%)
Query: 16 NQPIASIDLGTKRIGL---AISDPGRRF--AHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ + +D G R G AIS+ GR A P K EL+ + +
Sbjct: 321 GRRVLGVDPGL-RTGCKLAAISETGRFLEQATIYPHTGGAKAASAGGELVQLVERHDCRL 379
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDE 111
IG NG+ G T FV + V V +E
Sbjct: 380 IAIG-----NGTGG---RETEVFVREALRAAGVKAETVMVNE 413
>gi|323126833|gb|ADX24130.1| putative transcription accessory protein [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 710
Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LAI D A P + K+ L I T
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAIVDQTGKLLATQVIYPVAPASQTKIQAAKETLAQLIET 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I IG NG+ + AFV +++ +V +E +V + L
Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412
>gi|251782010|ref|YP_002996312.1| hypothetical protein SDEG_0596 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242390639|dbj|BAH81098.1| hypothetical protein SDEG_0596 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 710
Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGR-RFAH----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LAI D A P + K+ L I T
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAIVDQTGKLLATQVIYPVAPASQTKIQAAKETLAQLIET 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I IG NG+ + AFV +++ +V +E +V + L
Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412
>gi|332358670|gb|EGJ36493.1| S1 RNA binding domain protein [Streptococcus sanguinis SK355]
Length = 710
Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412
>gi|332522618|ref|ZP_08398870.1| Tex-like protein N-terminal domain protein [Streptococcus porcinus
str. Jelinkova 176]
gi|332313882|gb|EGJ26867.1| Tex-like protein N-terminal domain protein [Streptococcus porcinus
str. Jelinkova 176]
Length = 710
Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P + K+ Q +L + I+
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVAPASQAKIAQAKKDLAAIISD 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
NI IG NG+ + AFV ++ +V +E +V + L
Sbjct: 364 YNIEIIAIG-----NGTAS---RESEAFVAEVLKDFPNCSYVIVNESGASVYSASEL 412
>gi|290473267|ref|YP_003466133.1| protein yhgF [Xenorhabdus bovienii SS-2004]
gi|289172566|emb|CBJ79335.1| Protein yhgF [Xenorhabdus bovienii SS-2004]
Length = 780
Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 12/99 (12%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGL--AISDPGR-RFAHPRPFLVRKKVTQTALELLSFITT 65
++ + + +D G R G+ A+ D A + + + A + + T
Sbjct: 318 MMAAPAGMRATMGLDPGL-RTGVKVAVVDSTGKLIATDTVYPHTGQEVKAAAAVAALCTK 376
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
+ IG NG+ T F N+ + V
Sbjct: 377 YQVELVAIG-----NGTAS---RETERFFANIQKQYPDV 407
>gi|229816713|ref|ZP_04446999.1| hypothetical protein COLINT_03759 [Collinsella intestinalis DSM
13280]
gi|229807689|gb|EEP43505.1| hypothetical protein COLINT_03759 [Collinsella intestinalis DSM
13280]
Length = 810
Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 15/114 (13%)
Query: 15 PNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIA 69
+ ++D G R G +A+ D + P R+ + T ELL I
Sbjct: 404 RGARVIALDPG-YRAGCKVAVLDEYGKLLDHTILYPTPPRRDIAGTKRELLRLARKHRIN 462
Query: 70 AFIIGLPLNMNGSEGPRVHSTR-AFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
++G NG+ AF+ + + + +E +V + L
Sbjct: 463 TIVVG-----NGTASRETEEVVSAFI---AESAPELRYTIVNEAGASVYSASKL 508
>gi|302384292|ref|YP_003820115.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
subvibrioides ATCC 15264]
gi|302194920|gb|ADL02492.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
subvibrioides ATCC 15264]
Length = 179
Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 18 PIASIDLGTKRIG----LAISDPGRRFAHPRPF 46
I +D G +R G +A R AH
Sbjct: 12 RILGLDPGLRRTGWGVVVAEGSRLRWIAHGVVT 44
>gi|291542424|emb|CBL15534.1| Transcriptional accessory protein [Ruminococcus bromii L2-63]
Length = 715
Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 15/100 (15%)
Query: 15 PNQPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ + ++D G R G A+ D + P KK+ ++ LL I ++
Sbjct: 312 KGKTVLALDPG-YRTGCKTAVVDSTGKVLDTTVIYPTHSDKKIQESKQTLLRLIKKHHVD 370
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
IG NG+ F I + P +
Sbjct: 371 IISIG-----NGTASKETEM---FTAETIKEADH-PVYYM 401
>gi|301632867|ref|XP_002945501.1| PREDICTED: protein tex-like [Xenopus (Silurana) tropicalis]
Length = 792
Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 15/101 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G +A+ D + A P R+ +
Sbjct: 323 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDRTGKLVETATVYPHEPRRDWDGSLAT 381
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
L + IG NG+ T ++I
Sbjct: 382 LGRLCMKHGVQLIAIG-----NGTAS---RETDRLAADLIK 414
>gi|168704816|ref|ZP_02737093.1| RNA binding S1 domain protein [Gemmata obscuriglobus UQM 2246]
Length = 1097
Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 15 PNQPIASIDLGTKRIG--LAISDPGRRFAH-PRPFLVRKKVTQTALE-LLSFITTENIAA 70
+ + +ID G R G LA D + + +K A L I I+
Sbjct: 408 RGKKVLAIDPGI-RTGCKLAALDETGKLLEDAVIYPHNQKQAGDAKRKLEQLIRKYQISV 466
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVP 105
IG SE FVH ++ P
Sbjct: 467 IAIGNGTGCRDSEQLVADLIAEFVHRRLNPVPEAP 501
>gi|37521877|ref|NP_925254.1| hypothetical protein gll2308 [Gloeobacter violaceus PCC 7421]
gi|35212876|dbj|BAC90249.1| gll2308 [Gloeobacter violaceus PCC 7421]
Length = 136
Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 25/141 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID G + GLA F Q ++ + +AA +IG
Sbjct: 2 ILGIDPGRSKCGLA----LVGLDRKLYFRSVVASDQLLKQVERLLEDFPVAALVIG---- 53
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
+ + + + V V ER ++ A+ N R
Sbjct: 54 -DQTTSE------YWQAQLRAAFPEVRLVAVPERRSSEQARARYWQFNPPRGLNRLLPQD 106
Query: 134 -----QKVDSIAAALILQEVL 149
+ D + A ++++ L
Sbjct: 107 FRVPPEAYDDVVALILVERYL 127
>gi|325690815|gb|EGD32816.1| S1 RNA binding domain protein [Streptococcus sanguinis SK115]
Length = 710
Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSDLIEQ 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412
>gi|322391920|ref|ZP_08065384.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780]
gi|321145146|gb|EFX40543.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780]
Length = 709
Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 21/123 (17%)
Query: 9 LVKSLKPNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALEL 59
LV LK + + D R G LA+ D + P +++ + L
Sbjct: 301 LVAPLK-GRVVLGFDPAF---RTGAKLAVVDVTGKMLTTQVIYPVKPASARQIEEAKRYL 356
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
I + IG NG+ + AFV ++ V +V +E +V +
Sbjct: 357 ADLIGQYGVEIIAIG-----NGTAS---RESEAFVSEVLKDFPEVSYVIVNESGASVYSA 408
Query: 120 QIL 122
L
Sbjct: 409 SEL 411
>gi|159902814|ref|YP_001550158.1| hypothetical protein P9211_02731 [Prochlorococcus marinus str. MIT
9211]
gi|159887990|gb|ABX08204.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9211]
Length = 146
Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 25/142 (17%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G ++ GL ++D ++ V ++ + I I+G
Sbjct: 5 IAIDPGREKCGLILADLDNHIVIEGKVVISSSVLDL---IIKWQNNYEIKLIILG----- 56
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--------VSRKK 131
NG+ F + + + +E TT A+ +++ + ++
Sbjct: 57 NGTSS-------NFWYLKLIEVCKLSIKLVEESGTTFRARGRYFEISSPNFFLRFIPKQM 109
Query: 132 RI--QKVDSIAAALILQEVLDR 151
RI + +DS AA L+L++ L R
Sbjct: 110 RIPPKNLDSFAALLLLEDYLHR 131
>gi|319793772|ref|YP_004155412.1| RNAase H [Variovorax paradoxus EPS]
gi|315596235|gb|ADU37301.1| Tex-like protein protein-like protein [Variovorax paradoxus EPS]
Length = 791
Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 15/101 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G+ A+ D + A P RK +
Sbjct: 323 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVETATVFPHEPRKDWEGSLHT 381
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
L + IG NG+ T ++I
Sbjct: 382 LGKLCAKHGVNLIAIG-----NGTAS---RETDKLAADLIK 414
>gi|221236281|ref|YP_002518718.1| Holliday junction resolvase [Caulobacter crescentus NA1000]
gi|220965454|gb|ACL96810.1| crossover junction endodeoxyribonuclease ruvC [Caulobacter
crescentus NA1000]
Length = 173
Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 9/76 (11%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIG---LAI-SDPGRRFAHPRPFLVRKKVTQT-----AL 57
E ++ + + I +D G +R G LA+ AH K
Sbjct: 3 EHMMNANRLPTRILGLDPGLRRTGWGVLAVEGSRMTHIAHGVITPDEKAEFADRLLHLFE 62
Query: 58 ELLSFITTENIAAFII 73
+ + I +
Sbjct: 63 GITAVIEQHRPDEAAV 78
>gi|332638877|ref|ZP_08417740.1| transcriptional accessory protein [Weissella cibaria KACC 11862]
Length = 727
Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 16/115 (13%)
Query: 9 LVKSLKPNQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALE-LLSF 62
L+ + + + D G R G LA+ D +F A P K + A E ++
Sbjct: 319 LMAAPLRGRVVLGFDPGI-RTGSKLAVVDENGKFLEKAVIYPHRAAKYDPKGAKETIIKL 377
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTV 116
+ +A IG NG+ ++ F+ ++I + +V +E +V
Sbjct: 378 VKQYGVALVAIG-----NGTAS---RESQTFIADIIKSDLPDLQYVVVNESGASV 424
>gi|332712008|ref|ZP_08431938.1| restriction endonuclease [Lyngbya majuscula 3L]
gi|332349336|gb|EGJ28946.1| restriction endonuclease [Lyngbya majuscula 3L]
Length = 444
Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLA-ISDPGRRFAHPRPFLVRKKVTQTALE 58
M I+D S+ + I ID G+K G+A + + R + R + + ALE
Sbjct: 42 MPDRSIDD---SVTHSHRIK-IDPGSKTTGIAIVCEQTGRVTNALEINHRGQQIKKALE 96
>gi|227495533|ref|ZP_03925849.1| diphosphate--fructose-6-phosphate 1-phosphotransferase [Actinomyces
coleocanis DSM 15436]
gi|226831080|gb|EEH63463.1| diphosphate--fructose-6-phosphate 1-phosphotransferase [Actinomyces
coleocanis DSM 15436]
Length = 407
Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 44 RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP---------RVHSTRAFV 94
+ TA +L ++ + ++GLP ++ P F
Sbjct: 116 LHTIGGDDTNTTAADLAHYLEENDYQLTVVGLPKTIDNDVVPVRQSLGAWTAAEEAAKFA 175
Query: 95 HNMIDRKVYVP 105
N+I P
Sbjct: 176 RNIIGEHRSNP 186
>gi|324993865|gb|EGC25784.1| S1 RNA binding domain protein [Streptococcus sanguinis SK405]
Length = 710
Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSDLIEQ 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412
>gi|262038236|ref|ZP_06011626.1| Fe(3+) ions import ATP-binding protein FbpC [Leptotrichia
goodfellowii F0264]
gi|261747703|gb|EEY35152.1| Fe(3+) ions import ATP-binding protein FbpC [Leptotrichia
goodfellowii F0264]
Length = 354
Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 50 KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
+++ + ++L + E+ A + P M+G + RV RA + N + +
Sbjct: 115 QEIDERVKKILQLMKMEDFAERV---PSQMSGGQQQRVSLARALIMNSS-------VLLF 164
Query: 110 DERLTTVSAQQILIDMNVSRKKRIQK 135
DE L+ + A+ L + RK + +
Sbjct: 165 DEPLSNLDAKLRLHMRDEIRKLQQEV 190
>gi|125718359|ref|YP_001035492.1| transcriptional accessory ribonuclease (YqgFc, S1) [Streptococcus
sanguinis SK36]
gi|125498276|gb|ABN44942.1| Transcriptional accessory ribonuclease (YqgFc, S1), putative
[Streptococcus sanguinis SK36]
gi|324991505|gb|EGC23438.1| S1 RNA binding domain protein [Streptococcus sanguinis SK353]
Length = 710
Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSDLIEQ 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412
>gi|78778635|ref|YP_396747.1| hypothetical protein PMT9312_0250 [Prochlorococcus marinus str. MIT
9312]
gi|78712134|gb|ABB49311.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9312]
Length = 145
Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 26/141 (18%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ SID G + GL + D ++ L + + + L+S+ ENI+ IIG
Sbjct: 3 KLISIDPGKCKCGLVVVDLHQKKVDQAVVLNTEFLPKHVKTLISY---ENISKVIIG--- 56
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR----- 132
NG+ + F+ N + +E+ TT A++ ++ +R +
Sbjct: 57 --NGTTSRQNIEKLEFIKN--------DLIIVEEKNTTFRAKKRYFELFPTRGLKTFLPK 106
Query: 133 -----IQKVDSIAAALILQEV 148
+ +D+++A +IL++
Sbjct: 107 EIFIMNKNLDAVSALIILEDY 127
>gi|261855147|ref|YP_003262430.1| crossover junction endodeoxyribonuclease RuvC [Halothiobacillus
neapolitanus c2]
gi|261835616|gb|ACX95383.1| crossover junction endodeoxyribonuclease RuvC [Halothiobacillus
neapolitanus c2]
Length = 188
Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAH 42
+ ID G+ +G+A+ D R A
Sbjct: 5 RVMGIDPGSVTMGVAVLDFERGSAT 29
>gi|239815851|ref|YP_002944761.1| RNA binding S1 domain protein [Variovorax paradoxus S110]
gi|239802428|gb|ACS19495.1| RNA binding S1 domain protein [Variovorax paradoxus S110]
Length = 791
Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 15/101 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIGL--AISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G+ A+ D + A P RK +
Sbjct: 323 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVETATVFPHEPRKDWEGSLHT 381
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
L + IG NG+ T ++I
Sbjct: 382 LGKLCAKHGVNLIAIG-----NGTAS---RETDKLAADLIK 414
>gi|220911765|ref|YP_002487074.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
gi|219858643|gb|ACL38985.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
Length = 830
Score = 34.2 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 14/94 (14%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFA---HPRPFLVRKKVTQTALELLSFITTENIAA 70
N+P +D G R G +A+ D + P +K + L+ +
Sbjct: 343 NRPTLGLDPGL-RTGVKVAVVDGTGKVVATDTVYPHAPARKWDEALASLVKLARQHAVEL 401
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV 104
IG NG+ T +I V
Sbjct: 402 VAIG-----NGTAS---RETDKLAAELIKLLPDV 427
>gi|302390453|ref|YP_003826274.1| type IV pilus assembly protein PilM [Thermosediminibacter oceani
DSM 16646]
gi|302201081|gb|ADL08651.1| type IV pilus assembly protein PilM [Thermosediminibacter oceani
DSM 16646]
Length = 298
Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 12 SLKPNQPIASIDLGTKRIGLAI--SDPGR-RFAHPRPFLVRKKVTQTALELLSFITT 65
SL+ + + +DLGT RI +A+ D + A P P +T+ L +
Sbjct: 5 SLRRQKGLLGVDLGTARIKVAVVRGDRLLAKGAVPAPAGGWDNITEMIAALAEAVQQ 61
>gi|330825776|ref|YP_004389079.1| Tex-like protein [Alicycliphilus denitrificans K601]
gi|329311148|gb|AEB85563.1| Tex-like protein [Alicycliphilus denitrificans K601]
Length = 794
Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G +A+ D + A P R+ +
Sbjct: 323 NLRDLLLAAPAGPKAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWDGSLAV 381
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
L + IG NG+ T +I
Sbjct: 382 LGRLCMKHGVQLIAIG-----NGTAS---RETDKLAAELIK 414
>gi|319762303|ref|YP_004126240.1| tex-like protein [Alicycliphilus denitrificans BC]
gi|317116864|gb|ADU99352.1| Tex-like protein [Alicycliphilus denitrificans BC]
Length = 794
Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G +A+ D + A P R+ +
Sbjct: 323 NLRDLLLAAPAGPKAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWDGSLAV 381
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
L + IG NG+ T +I
Sbjct: 382 LGRLCMKHGVQLIAIG-----NGTAS---RETDKLAAELIK 414
>gi|223985347|ref|ZP_03635418.1| hypothetical protein HOLDEFILI_02724 [Holdemania filiformis DSM
12042]
gi|223962683|gb|EEF67124.1| hypothetical protein HOLDEFILI_02724 [Holdemania filiformis DSM
12042]
Length = 255
Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFV 94
A P + R + + I + P M+G + RV RA +
Sbjct: 107 IALPL-TIQRVNPKKIEARIKKLSVQLGIEEVLKKYPYQMSGGQQQRVACARAMI 160
>gi|194017318|ref|ZP_03055930.1| bacitracin export ATP-binding protein BceA [Bacillus pumilus ATCC
7061]
gi|194011186|gb|EDW20756.1| bacitracin export ATP-binding protein BceA [Bacillus pumilus ATCC
7061]
Length = 253
Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 47 LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF 106
+ + + I P ++G + R + RAF+H P
Sbjct: 112 ISKTPKKEAFERFQQLAEDMGIYELRDKYPNELSGGQKQRTSAVRAFIHEPSLIFADEPT 171
Query: 107 VFWDERLTTVSAQQILIDMNVSRKKRIQKV-----DSIAAAL 143
D + SA +L + +KR + D +AA+
Sbjct: 172 GALD----SKSASDLLNKLQDFNRKRKATIVMVTHDPVAASY 209
>gi|157693351|ref|YP_001487813.1| ABC transporter ATP-binding protein [Bacillus pumilus SAFR-032]
gi|157682109|gb|ABV63253.1| ABC superfamily ATP binding cassette transporter, binding protein
[Bacillus pumilus SAFR-032]
Length = 253
Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 47 LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF 106
+ + + I P ++G + R + RAF+H P
Sbjct: 112 ISKTPKKEAFERFQQLAEDMGIYELRDKYPNELSGGQKQRTSAVRAFIHEPSLIFADEPT 171
Query: 107 VFWDERLTTVSAQQILIDMNVSRKKRIQKV-----DSIAAAL 143
D + SA +L + +KR + D +AA+
Sbjct: 172 GALD----SKSASDLLNKLQDFNRKRKATIVMVTHDPVAASY 209
>gi|171780107|ref|ZP_02921011.1| hypothetical protein STRINF_01895 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281455|gb|EDT46890.1| hypothetical protein STRINF_01895 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 710
Score = 34.2 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P + K+ Q+ +L I++
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVAPASQAKIEQSKKDLAELISS 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 YGIEIIAIG-----NGTAS---RESEAFVAQVLKDFPDVSYVIVNESGASVYSASEL 412
>gi|313889985|ref|ZP_07823622.1| Tex-like protein N-terminal domain protein [Streptococcus
pseudoporcinus SPIN 20026]
gi|313121643|gb|EFR44745.1| Tex-like protein N-terminal domain protein [Streptococcus
pseudoporcinus SPIN 20026]
Length = 713
Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P + K+ Q +L + I+
Sbjct: 310 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTQVIYPVAPASQAKIAQAKKDLAALISD 366
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I IG NG+ + AFV +++ +V +E +V + L
Sbjct: 367 YKIEIIAIG-----NGTAS---RESEAFVADVLKDFPNCSYVIVNESGASVYSASEL 415
>gi|149175515|ref|ZP_01854136.1| ribosomal protein S1-like RNA-binding domain [Planctomyces maris
DSM 8797]
gi|148845783|gb|EDL60125.1| ribosomal protein S1-like RNA-binding domain [Planctomyces maris
DSM 8797]
Length = 828
Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 14/93 (15%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGR-RFAHPRPFLVRKKVTQTALE--LLSFITTENIAA 70
Q I +ID G R G LA+ D A ++ + L +T
Sbjct: 331 GQRILAIDPGL-RTGCKLAVLDELGYCVATDLVYVTGSADKKEFARKKLAEVMTEHQCQL 389
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
IG NG+ T + MI++ +
Sbjct: 390 VAIG-----NGT---ACRETEEIITEMIEQDLP 414
>gi|224047235|ref|XP_002194171.1| PREDICTED: similar to S1 RNA-binding domain-containing protein 1
[Taeniopygia guttata]
Length = 1207
Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 15 PNQPIASIDLGTKRIG--LA-ISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ + +D G K G LA IS + +L + + A ++ + N +
Sbjct: 756 RGRALMGVDPGYKH-GCKLAIISPTSQILHTDVVYLHSGQGFREAEKIKRLLLQYNCSTV 814
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
+IG NG+ T A+ ++I +K + P
Sbjct: 815 VIG-----NGT---ACRETEAYFADLIMKKYFAPLDVV 844
>gi|72383450|ref|YP_292805.1| hypothetical protein PMN2A_1614 [Prochlorococcus marinus str.
NATL2A]
gi|72003300|gb|AAZ59102.1| conserved hypothetical protein [Prochlorococcus marinus str.
NATL2A]
Length = 145
Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 29/142 (20%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGLPL 77
SID G K+ GL ++D + + + + + + I IIG
Sbjct: 5 ISIDPGMKKCGLLLADM-----QSGEVIEAGVASLNKFSDLVSQWNEDHEITKIIIG--- 56
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNVSRKKRI 133
NG+ ++ N + R + +ER +T+ A+ + R
Sbjct: 57 --NGTN-------CKYIENKLKRNNSFNINYVNERGSTLRARFRYWEIWPPNYFIRWLPK 107
Query: 134 QK------VDSIAAALILQEVL 149
+ +D+I A ++L++ L
Sbjct: 108 EILFPPANLDAIVALILLEDFL 129
>gi|319939357|ref|ZP_08013717.1| S1 RNA binding domain-containing protein [Streptococcus anginosus
1_2_62CV]
gi|319811343|gb|EFW07638.1| S1 RNA binding domain-containing protein [Streptococcus anginosus
1_2_62CV]
Length = 712
Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + +L I
Sbjct: 309 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVPPAKAAQIEASKQDLSDLIDQ 365
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 366 FGVEIIAIG-----NGTAS---RESEAFVAEVLKTHPNVSYVIVNESGASVYSASEL 414
>gi|33601194|ref|NP_888754.1| hypothetical protein BB2210 [Bordetella bronchiseptica RB50]
gi|33602484|ref|NP_890044.1| hypothetical protein BB3509 [Bordetella bronchiseptica RB50]
gi|33575629|emb|CAE32707.1| phage-related conserved hypothetical protein [Bordetella
bronchiseptica RB50]
gi|33576923|emb|CAE34003.1| phage-related conserved hypothetical protein [Bordetella
bronchiseptica RB50]
Length = 227
Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-------LLSFITT 65
L PN I ++DLGTK +G A+ R +H + L+ IT
Sbjct: 72 LGPNVTILALDLGTK-LGWAVRGRDGRTSHGTEVFTPRASWSPGQRWLRARSFLVEVITQ 130
Query: 66 ENIAAF 71
+ A
Sbjct: 131 RQVHAI 136
>gi|91779869|ref|YP_555077.1| putative polyphosphate glucokinase [Burkholderia xenovorans LB400]
gi|91692529|gb|ABE35727.1| putative polyphosphate glucokinase [Burkholderia xenovorans LB400]
Length = 266
Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 18/110 (16%)
Query: 17 QPIASIDLGTKRIGL--AISDPGR-------RFAHPRPFLVRKKVTQTALELLSFITTEN 67
+ I +ID+G GL AI D R A P P + V A + + E
Sbjct: 13 ERILAIDVGG--TGLKAAIIDADGKMKTERVRVATPHPCTPDQLVDALAKLVAPLVEQEP 70
Query: 68 IAAFIIGLP-LNMNGSE------GPRVHSTRAFVHNMIDRKVYVPFVFWD 110
IG P + N G A ++ R +P +
Sbjct: 71 PTRMSIGFPGVVRNNRILTAPHFGVEGWHDIALADSLAQRLGGLPVRMIN 120
>gi|254522654|ref|ZP_05134709.1| S1 RNA binding domain protein [Stenotrophomonas sp. SKA14]
gi|219720245|gb|EED38770.1| S1 RNA binding domain protein [Stenotrophomonas sp. SKA14]
Length = 795
Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 16/93 (17%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRRF-AH----PRPFLVRKKVTQTA 56
++DL+ + + + +D G R G +A+ D + A P R++ Q+
Sbjct: 321 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKIAVVDATGKLVATDTIYPHE--PRRQWEQSL 377
Query: 57 LELLSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
+ N+ IG NG+
Sbjct: 378 QTIKQLCAKHNVELIAIG-----NGTASRETDK 405
>gi|15789627|ref|NP_279451.1| hypothetical protein VNG0368C [Halobacterium sp. NRC-1]
gi|169235339|ref|YP_001688539.1| CinA C-terminal domain-containing protein [Halobacterium salinarum
R1]
gi|10579987|gb|AAG18931.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167726405|emb|CAP13188.1| cinA C-terminal domain protein [Halobacterium salinarum R1]
Length = 171
Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 24 LGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+GT IG+A + A +VR++ + + I
Sbjct: 117 VGTAYIGVAYA-GDWGTATSATTVVRREFDGDRQAVKAQIAR 157
>gi|313667339|ref|YP_004049740.1| hypothetical protein Ocepr_2372 [Oceanithermus profundus DSM
14977]
gi|313153970|gb|ADR37820.1| hypothetical protein Ocepr_2372 [Oceanithermus profundus DSM
14977]
Length = 172
Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
I ID G+K+IGLA + PR + R + +L +I ++
Sbjct: 2 ILGIDPGSKKIGLA---ALQTHPRPRVYKSRVLPVKNLTQLGDWIEEASLVVL 51
>gi|325111100|ref|YP_004272168.1| Crossover junction endodeoxyribonuclease ruvC [Planctomyces
brasiliensis DSM 5305]
gi|324971368|gb|ADY62146.1| Crossover junction endodeoxyribonuclease ruvC [Planctomyces
brasiliensis DSM 5305]
Length = 167
Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 13 LKPNQPIASIDLGTKRI--GL--A-----ISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
+ Q I ID G R G+ A I D G A + ++ + A E+ + I
Sbjct: 1 MAQEQRILGIDPGLTRTGYGVLHAQDGRTILDEGGVIATTTNDTLADRIHEIATEVKAVI 60
Query: 64 TTENIAAFII 73
+ +I
Sbjct: 61 NDWKPSVMVI 70
>gi|15890736|ref|NP_356408.1| ABC transporter, nucleotide binding/ATPase protein (polyamine)
[Agrobacterium tumefaciens str. C58]
gi|15159011|gb|AAK89193.1| ABC transporter, nucleotide binding/ATPase protein (polyamine)
[Agrobacterium tumefaciens str. C58]
Length = 360
Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 40 FAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97
A P R K A E+L + E P M+G + RV RA
Sbjct: 98 IAFPLKVRRRSKADIDAKVKEMLRLVRLEGFEDR---KPAQMSGGQQQRVALARALA--- 151
Query: 98 IDRKVYVPFVFWDERLT 114
P + DE L+
Sbjct: 152 ----YDPPVLLMDEPLS 164
>gi|315127007|ref|YP_004069010.1| amino acid decarboxylase [Pseudoalteromonas sp. SM9913]
gi|315015521|gb|ADT68859.1| amino acid decarboxylase [Pseudoalteromonas sp. SM9913]
Length = 636
Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 47 LVRKKVTQTALELLSF-----ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK 101
R + +E L I E+ + L ++ G R +S F+ + +
Sbjct: 31 FERDDIHIDIIERLELKQALDIVEEDGDIQAVVLSWDLQNKVGERTYS--RFIEQLKGIR 88
Query: 102 VYVPFV 107
+ +P
Sbjct: 89 LELPVY 94
>gi|118580106|ref|YP_901356.1| RNA-binding S1 domain-containing protein [Pelobacter propionicus
DSM 2379]
gi|118502816|gb|ABK99298.1| RNA binding S1 domain protein [Pelobacter propionicus DSM 2379]
Length = 723
Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ + ID G R G LA D RF P ++ Q ELL + T +I
Sbjct: 323 GKRVLGIDPGF-RTGSKLAALDATGRFMEHVTIYPHTGEARIHQARQELLRLVETFDIEM 381
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124
+G NG+ G + F + +P V E +V SA +I +
Sbjct: 382 IAVG-----NGTAGREMEI---FSRETLAGAGWQIPVVSVSEAGASVYSASEIARE 429
>gi|284049365|ref|YP_003399704.1| Tex-like protein [Acidaminococcus fermentans DSM 20731]
gi|283953586|gb|ADB48389.1| Tex-like protein [Acidaminococcus fermentans DSM 20731]
Length = 724
Score = 34.2 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 14/98 (14%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGR-RFAHPRPFLVRKKVTQTALE--LLSFITTENIAA 70
+ +D G R G +A+ DP H + + + + E LLS I ++
Sbjct: 317 GHTVMGLDPG-YRTGCKVAVVDPTGQVLDHGVIQVTQSEGQKKKAEALLLSMIQKHHVTL 375
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF 108
IG NG+ F +I +
Sbjct: 376 LSIG-----NGTASYETEQ---FAARLIQEHQLKDVHY 405
>gi|222152742|ref|YP_002561919.1| transcription accessory protein [Streptococcus uberis 0140J]
gi|222113555|emb|CAR41362.1| putative transcription accessory protein [Streptococcus uberis
0140J]
Length = 710
Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P + K+ EL I++
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAVVDQTGKLMTTHVIYPVPPASQTKIQLAKKELAEIISS 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+I IG NG+ + AFV +++ +V +E +V + L
Sbjct: 364 YDIEIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412
>gi|56807868|ref|ZP_00365703.1| COG2183: Transcriptional accessory protein [Streptococcus pyogenes
M49 591]
Length = 580
Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LAI D + P + K+ L I T
Sbjct: 307 KGEMVLGFDPAF---RTGAKLAIVDQTGKLLTTQVIYPVAPASQTKIQAAKETLTQLIET 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I IG NG+ + AFV +++ +V +E +V + L
Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412
>gi|95931126|ref|ZP_01313851.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
gi|95132816|gb|EAT14490.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
Length = 747
Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 16/113 (14%)
Query: 19 IASIDLGTKRIG--LAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ ID G R G LA+ F P + + Q + ++ + I + +
Sbjct: 350 VLGIDPGL-RTGSKLAVVSATGAFLDHVTIYPHTQKAQQPQFSRQISALIEKYAVEMVAV 408
Query: 74 GLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTV-SAQQILID 124
G NG+ G + FV + D P V +E +V SA +I +
Sbjct: 409 G-----NGTGGREMEQ---FVRQSLRDYDHSCPVVMVNEAGASVYSASEIARE 453
>gi|294101286|ref|YP_003553144.1| hypothetical protein Amico_0275 [Aminobacterium colombiense DSM
12261]
gi|293616266|gb|ADE56420.1| hypothetical protein Amico_0275 [Aminobacterium colombiense DSM
12261]
Length = 154
Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 42/158 (26%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---------VTQTALELLSFITTENIA 69
I ID G +IG A +D A +V K+ + + LL ++
Sbjct: 2 ILGIDPGKDKIGWAFADSKG--ALLFSGIVNKEELSSFWEVFMQKQWHNLLPWLKEREKE 59
Query: 70 --------AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-- 119
++G NG+ F + +R + +E TT+ A+
Sbjct: 60 PLLSESELTIVVG-----NGT---TCKEVLLF---LKERGLDAQV--VEEYGTTLEARKV 106
Query: 120 --QILIDMNVSR------KKRIQKVDSIAAALILQEVL 149
++ V + + + VD +AA +I++ L
Sbjct: 107 YWRLHPPQGVWKFIPKSLRVPNRDVDDLAAFVIIRRYL 144
>gi|163839885|ref|YP_001624291.1| ATPase family protein [Renibacterium salmoninarum ATCC 33209]
gi|162953361|gb|ABY22876.1| ATPase family protein [Renibacterium salmoninarum ATCC 33209]
Length = 313
Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 19/124 (15%)
Query: 1 MSILL--IEDLVKSLKPNQPIASIDL-GTKR--I----GLAISDPGRRFAHPRPFLVRKK 51
M +L + D+ + P I +D+ G+K I G+ I+D A+ + +
Sbjct: 1 MRLLPTILRDVSSTSIPPTAIIGLDIGGSKTRGILWHDGVVIADEQTGSAN-VQNVSIDE 59
Query: 52 VTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHS-TRAFVHNMIDRKVYVPF-VFW 109
Q +L S + T+ + G S G + A + VP V
Sbjct: 60 ARQNLQKLFSLLPTDGVEQIFAG-------SGGIDTEADAEALASLIRPHVPGVPVTVVH 112
Query: 110 DERL 113
D RL
Sbjct: 113 DTRL 116
>gi|327470660|gb|EGF16116.1| S1 RNA binding domain protein [Streptococcus sanguinis SK330]
Length = 710
Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVAPAKPAQIEASKKELSELIEQ 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412
>gi|315221406|ref|ZP_07863327.1| S1 RNA binding domain protein [Streptococcus anginosus F0211]
gi|315189525|gb|EFU23219.1| S1 RNA binding domain protein [Streptococcus anginosus F0211]
Length = 709
Score = 33.8 bits (77), Expect = 7.8, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + +L + I
Sbjct: 306 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTQVIYPVPPAKAAQIEASKQDLSNLIDQ 362
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 363 FGVEIIAIG-----NGTAS---RESEAFVAEVLKTHPNVSYVIVNESGASVYSASEL 411
>gi|255016321|ref|ZP_05288447.1| transposase [Bacteroides sp. 2_1_7]
Length = 338
Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 19/99 (19%)
Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
I++L S IDLG K LA+ GR F +P K Q +L+ L +
Sbjct: 91 TIQELPASAIQGNTTLGIDLGIKS--LAVCSDGRTFDNP-------KNLQRSLDRLKLLQ 141
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
L GS R V + +R
Sbjct: 142 KR--------LSRKQKGSANRNEARIR--VARLQERIAN 170
>gi|327490297|gb|EGF22085.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1058]
Length = 710
Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPTVSYVIVNESGASVYSASEL 412
>gi|327474740|gb|EGF20145.1| S1 RNA binding domain protein [Streptococcus sanguinis SK408]
Length = 710
Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPTVSYVIVNESGASVYSASEL 412
>gi|325687255|gb|EGD29277.1| S1 RNA binding domain protein [Streptococcus sanguinis SK72]
Length = 710
Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPTVSYVIVNESGASVYSASEL 412
>gi|324994814|gb|EGC26727.1| S1 RNA binding domain protein [Streptococcus sanguinis SK678]
gi|327461023|gb|EGF07356.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1057]
gi|327463129|gb|EGF09450.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1]
Length = 710
Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSELIEQ 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPTVSYVIVNESGASVYSASEL 412
>gi|325696116|gb|EGD38007.1| S1 RNA binding domain protein [Streptococcus sanguinis SK160]
gi|328946764|gb|EGG40902.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1087]
Length = 710
Score = 33.8 bits (77), Expect = 8.3, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LA+ D + P P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAVVDATGKMLTTHVIYPVPPAKPAQIEASKKELSGLIEQ 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412
>gi|150020177|ref|YP_001305531.1| RNA-binding S1 domain-containing protein [Thermosipho melanesiensis
BI429]
gi|149792698|gb|ABR30146.1| RNA binding S1 domain protein [Thermosipho melanesiensis BI429]
Length = 662
Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 15 PNQPIASIDLGTKRIG---LAISDPGR---RFAHPRPFLVRKKVTQTALELLSFITTENI 68
N I +ID G K G +A+ D A P + ++L + +
Sbjct: 289 KNTRILAIDPGNKT-GCKIVAL-DELGNPLEHAVIYPTAPYFDTKNSEKKILKMLQNHKL 346
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR 100
+IG NG+ T+ F+ I +
Sbjct: 347 KLIVIG-----NGTAS---RETQQFIAKTIKK 370
>gi|257452603|ref|ZP_05617902.1| transcription accessory protein [Fusobacterium sp. 3_1_5R]
gi|257466460|ref|ZP_05630771.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC
25563]
gi|315917617|ref|ZP_07913857.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC
25563]
gi|317059143|ref|ZP_07923628.1| transcription accessory protein [Fusobacterium sp. 3_1_5R]
gi|313684819|gb|EFS21654.1| transcription accessory protein [Fusobacterium sp. 3_1_5R]
gi|313691492|gb|EFS28327.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 723
Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 17/94 (18%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFA-----HPRPFLVRKKVTQTALEL-LSFITTEN 67
+ I ++D G R G +AI D + + +K + A + L +I
Sbjct: 317 EKTILALDPG-YRTGCKVAILDKHGFYQENDVFFLVEGMHHEKQLEDARKKALKYIKKYG 375
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK 101
I +IG NG+ T +FV +I +
Sbjct: 376 IDLVVIG-----NGTAS---RETESFVAKLIREE 401
>gi|296162062|ref|ZP_06844860.1| ROK family protein [Burkholderia sp. Ch1-1]
gi|295887683|gb|EFG67503.1| ROK family protein [Burkholderia sp. Ch1-1]
Length = 266
Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 18/110 (16%)
Query: 17 QPIASIDLGTKRIGL--AISDPGR-------RFAHPRPFLVRKKVTQTALELLSFITTEN 67
+ I +ID+G GL AI D R A P P + V A + + E
Sbjct: 13 ERILAIDVGG--TGLKAAIIDADGKMKTERVRVATPHPCTPDQLVDALAKLVAPLVAQEP 70
Query: 68 IAAFIIGLP-LNMNGSE------GPRVHSTRAFVHNMIDRKVYVPFVFWD 110
IG P + N G A ++ R +P +
Sbjct: 71 PTRMSIGFPGVVRNNRILTAPHFGVEGWHDIALADSLAQRLGGLPVRMIN 120
>gi|295700582|ref|YP_003608475.1| ROK family protein [Burkholderia sp. CCGE1002]
gi|295439795|gb|ADG18964.1| ROK family protein [Burkholderia sp. CCGE1002]
Length = 274
Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 20/128 (15%)
Query: 1 MSILLIEDLVKSLKPNQP--IASIDLGTKRIGL--AISDPGR-------RFAHPRPFLVR 49
M + ++ + I +ID+G GL AI D R A P P
Sbjct: 1 MPTRNKNAVKRNAPKSGSEHILAIDVGG--TGLKAAIIDANGQMKTERVRVATPHPCTPD 58
Query: 50 KKVTQTALELLSFITTENIAAFIIGLP-LNMNGSE------GPRVHSTRAFVHNMIDRKV 102
+ V A + I IG P + N G A ++ R
Sbjct: 59 QLVDALAQLVAPLIEQVQPVCISIGFPGVVRNNRILTAPHFGIEGWHDIALADSLARRLG 118
Query: 103 YVPFVFWD 110
+P +
Sbjct: 119 GLPVRMIN 126
>gi|320104703|ref|YP_004180294.1| Tex-like protein [Isosphaera pallida ATCC 43644]
gi|319751985|gb|ADV63745.1| Tex-like protein [Isosphaera pallida ATCC 43644]
Length = 1315
Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFL----VRKKVTQTALELLSFITTENIA 69
NQ + +ID G + G +A+ DP + + + ++ L+L I ++
Sbjct: 428 NQTVLAIDPGFRS-GCKVAVLDPHGVL-LEHTVIYPHPPQNRRSEAKLQLKDLIAKHQVS 485
Query: 70 AFIIGLPLNMNGSEGPRVHSTRA 92
IG NG+ A
Sbjct: 486 VVAIG-----NGTACRETEEVIA 503
>gi|75675014|ref|YP_317435.1| hypothetical protein Nwi_0818 [Nitrobacter winogradskyi Nb-255]
gi|74419884|gb|ABA04083.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
Length = 177
Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
++ I ++DLGT R G A+ R A + + L F
Sbjct: 22 SRTILALDLGT-RTGWAVLPRSGRIASGVTEFRPGRFEGAGMAFLRFEK 69
>gi|121534977|ref|ZP_01666795.1| Resolvase, RNase H domain protein fold [Thermosinus carboxydivorans
Nor1]
gi|121306390|gb|EAX47314.1| Resolvase, RNase H domain protein fold [Thermosinus carboxydivorans
Nor1]
Length = 141
Score = 33.4 bits (76), Expect = 9.3, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 42/144 (29%), Gaps = 28/144 (19%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D G + G+A+ R + A + A ++G
Sbjct: 5 VIAVDPGRDKCGVAVVSRDR----GVLYKAVVPTAALAAAVAKLAREFGAATVVVG---- 56
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVY---VPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
+ + G V + + + + V DE +T A+ N R R
Sbjct: 57 -DRTTGSAA------VKQLSVQPIDGRRLHIVTVDEHRSTDEARHRYWLENPPRGLRRLI 109
Query: 134 --------QKVDSIAAALILQEVL 149
VD A ++ +
Sbjct: 110 PTTMQVPPAPVDDYVAVILAERYF 133
>gi|16127468|ref|NP_422032.1| Holliday junction resolvase [Caulobacter crescentus CB15]
gi|20978751|sp|Q9A3G6|RUVC_CAUCR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|13424922|gb|AAK25200.1| Holliday junction resolvase [Caulobacter crescentus CB15]
Length = 169
Score = 33.4 bits (76), Expect = 9.3, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 9/65 (13%)
Query: 18 PIASIDLGTKRIG---LAI-SDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENI 68
I +D G +R G LA+ AH K + + I
Sbjct: 10 RILGLDPGLRRTGWGVLAVEGSRMTHIAHGVITPDEKAEFADRLLHLFEGITAVIEQHRP 69
Query: 69 AAFII 73
+
Sbjct: 70 DEAAV 74
>gi|310816123|ref|YP_003964087.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase
component [Ketogulonicigenium vulgare Y25]
gi|308754858|gb|ADO42787.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase
component [Ketogulonicigenium vulgare Y25]
Length = 273
Score = 33.4 bits (76), Expect = 9.8, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 48 VRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV 107
VRK++ + A ++L+ + +A F P ++G R R FV P +
Sbjct: 124 VRKRLPEDADQVLADL---GLADFADARPAQLSGGMRQRAAIARGFVQ-------GAPLM 173
Query: 108 FWDERLT-----TVSAQQILIDMNVSRKKRIQKV 136
DE + T A + L ++V +KR +
Sbjct: 174 LMDEPFSALDELTRDAVR-LRLLDVWERKRKTVI 206
>gi|323351224|ref|ZP_08086880.1| S1 RNA binding domain protein [Streptococcus sanguinis VMC66]
gi|322122448|gb|EFX94159.1| S1 RNA binding domain protein [Streptococcus sanguinis VMC66]
Length = 710
Score = 33.4 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LAI D + P ++ + EL I
Sbjct: 307 KGRVVLGFDPAF---RTGAKLAIVDATGKMLTTHVIYPVAPAKPAQIEASKKELSELIEQ 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ IG NG+ + AFV ++ V +V +E +V + L
Sbjct: 364 FGVEIIAIG-----NGTAS---RESEAFVAEVLKSHPNVSYVIVNESGASVYSASEL 412
>gi|306827781|ref|ZP_07461052.1| YhgF like protein [Streptococcus pyogenes ATCC 10782]
gi|304430005|gb|EFM33043.1| YhgF like protein [Streptococcus pyogenes ATCC 10782]
Length = 710
Score = 33.4 bits (76), Expect = 10.0, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 20/117 (17%)
Query: 15 PNQPIASID--LGTKRIG--LAISDPGRRFAH-----PRPFLVRKKVTQTALELLSFITT 65
+ + D R G LAI D + P + K+ L I T
Sbjct: 307 KGKMVLGFDPAF---RTGAKLAIVDQTGKLLTTQVIYPVAPASQTKIQAAKETLTQLIET 363
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I IG NG+ + AFV +++ +V +E +V + L
Sbjct: 364 YQIDIIAIG-----NGTAS---RESEAFVADVLKDFPNTSYVIVNESGASVYSASEL 412
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.315 0.190 0.615
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,662,901,170
Number of Sequences: 14124377
Number of extensions: 183428239
Number of successful extensions: 455020
Number of sequences better than 10.0: 2369
Number of HSP's better than 10.0 without gapping: 3120
Number of HSP's successfully gapped in prelim test: 1068
Number of HSP's that attempted gapping in prelim test: 446173
Number of HSP's gapped (non-prelim): 4283
length of query: 160
length of database: 4,842,793,630
effective HSP length: 122
effective length of query: 38
effective length of database: 3,119,619,636
effective search space: 118545546168
effective search space used: 118545546168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 77 (33.8 bits)