BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780976|ref|YP_003065389.1| Holliday junction resolvase
YqgF [Candidatus Liberibacter asiaticus str. psy62]
         (160 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 160

 Score =  323 bits (829), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
           MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL
Sbjct: 1   MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60

Query: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
           SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ
Sbjct: 61  SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120

Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
           ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG
Sbjct: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160


>gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 281

 Score = 27.7 bits (60), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 47  LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHS-TRAFVHNM 97
           ++++   Q   E LS +      +  IG+PL +  +  PR +S  R F+ +M
Sbjct: 84  IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSM 135


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 24.3 bits (51), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 46  FLVRKKVTQTALELLSFIT 64
           FL+ KK T  A E++SFIT
Sbjct: 280 FLMSKKGTSNAGEIMSFIT 298


>gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 311

 Score = 22.7 bits (47), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 89  STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
            T     N++D      F+   +++   SAQ +L ++N    K  +KV  I++
Sbjct: 172 GTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISS 224


>gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 230

 Score = 21.9 bits (45), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 130 KKRIQKVDSIAAALILQEVLDRISFLES 157
           + RI ++  +A A  L+E+ +++SFL S
Sbjct: 110 QDRIDRMMDVAIARELEEITEKLSFLGS 137


>gi|254780527|ref|YP_003064940.1| hypothetical protein CLIBASIA_02070 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 397

 Score = 21.6 bits (44), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 132 RIQKVDSIAAALILQEVLDRISFL 155
           R Q  DS+ A +  + VL++ SF+
Sbjct: 220 RYQSSDSLDALMSTESVLNQKSFM 243


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,411
Number of Sequences: 1233
Number of extensions: 3163
Number of successful extensions: 8
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 160
length of database: 328,796
effective HSP length: 67
effective length of query: 93
effective length of database: 246,185
effective search space: 22895205
effective search space used: 22895205
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 35 (18.1 bits)