HHsearch alignment for GI: 254780978 and conserved domain: COG0154
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=836.88 Aligned_cols=467 Identities=48% Similarity=0.780 Sum_probs=411.2
Q ss_pred CCCCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHH--HHHHHHHHHHCCC-CCCCCCCEEH
Q ss_conf 984134509999999996898789999999999999688555899988899999--9999999997888-9886612122
Q gi|254780978|r 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARA--AAEESDKRIINGD-ARDLEGIPIG 77 (493)
Q Consensus 1 m~~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~--~A~~~d~~~~~~~-~~pL~GiPi~ 77 (493)
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPia 80 (475)
T COG0154 1 MMALTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIA 80 (475)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 97412401999999997378999999999999999728677889993733301088899988998559887777885378
Q ss_pred HHHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32000048785533037651575444321046888740000111000001356653222234335667676566554455
Q gi|254780978|r 78 IKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPG 157 (493)
Q Consensus 78 vKD~~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~G 157 (493)
T Consensus 81 vKDn~~~~G~~Tt~gS~~l~~~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~-----~~pG 155 (475)
T COG0154 81 VKDNIDTAGLPTTAGSKALEDYVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLE-----RVPG 155 (475)
T ss_pred EECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCC-----CCCC
T ss_conf 84154658977687574433489987759999999789889985577566508888899999969998899-----7888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 54445421001233432243211211113055411101154541000112332222121235443220234466530224
Q gi|254780978|r 158 GSSGGSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAG 237 (493)
Q Consensus 158 GSs~G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g 237 (493)
T Consensus 156 GSSgGSAaAVAag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g 235 (475)
T COG0154 156 GSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAG 235 (475)
T ss_pred CCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 67189999998188760210467862033147608745657998768778766667888034622879999999998658
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH--HHHH
Q ss_conf 674310-11112465310124443222222343444433-3201456556656654332211013568872145--5554
Q gi|254780978|r 238 YDECDA-TCVNLPVPDYERALDQSIQGMTVGIPKEYRLD-YLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQY--ALPA 313 (493)
Q Consensus 238 ~d~~D~-~~~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~-~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~--~~~~ 313 (493)
T Consensus 236 ~D~~d~~~~~~~~~~~--~~~~~~~~~lrigv~~~~~~~~~~~~~v~~~~~~a~~~l~~~Ga~v~~v~lp~~~~~~~~~~ 313 (475)
T COG0154 236 PDPRDSPLPPPPPVPP--ALAGKDLKGLRIGVPKELGGGGPLDPDVRAAFEAAVKALEAAGAEVVEVSLPLLSDDYALAA 313 (475)
T ss_pred CCCCCCCCCCCCCCCC--HHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
T ss_conf 8866676555556760--12025778738999875455577888899999999999996799898616772035566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 44445678988877653331031002431024554321000014666665302333332000122334578999999999
Q gi|254780978|r 314 YYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDF 393 (493)
Q Consensus 314 ~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~ 393 (493)
T Consensus 314 ~~----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~--~~i~~~~ 376 (475)
T COG0154 314 YY----------LARFDGERYGLRAADL-----YGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQK--TLIRRAF 376 (475)
T ss_pred HH----------HHHHHHHHHHHHCHHH-----CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH--HHHHHHH
T ss_conf 77----------8887665652200011-----03110002588999998636765547899999999888--8999999
Q ss_pred HHHHHCCCCEEEECCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHH
Q ss_conf 9998639989991799899987763-346732578876437899999878983768403559998379999518998799
Q gi|254780978|r 394 TEAFEQGVDVILTPTTPTSAFPLGK-EENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREET 472 (493)
Q Consensus 394 ~~~~~~~~D~lI~Pt~~~~a~~~~~-~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~ 472 (493)
T Consensus 377 ~~~f~~-~D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~ 455 (475)
T COG0154 377 DKLFEE-VDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDAT 455 (475)
T ss_pred HHHHHH-CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCHHH
T ss_conf 999973-9999947889887666652234445888875213555664568976886368898998851799568887999
Q ss_pred HHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999257797888
Q gi|254780978|r 473 LFSVGQIIEKEAGYFRPHKW 492 (493)
Q Consensus 473 lL~~a~~~E~~~~~~~pp~~ 492 (493)
T Consensus 456 LL~~a~~~E~~~~~~~~~~~ 475 (475)
T COG0154 456 LLRLAAALEQALGWHRRPPP 475 (475)
T ss_pred HHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999985176778999