HHsearch alignment for GI: 254780978 and conserved domain: TIGR02713
>TIGR02713 allophanate_hyd allophanate hydrolase; InterPro: IPR014085 Allophanate hydrolase catalyses the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase..
Probab=100.00 E-value=0 Score=665.54 Aligned_cols=409 Identities=29% Similarity=0.444 Sum_probs=338.0
Q ss_pred CEEEEECH-HHHHHHHHHHHHHHHCC--CCCCCCCCEEHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 58999888-99999999999999788--8988661212232000048785533037651575444321046888740000
Q gi|254780978|r 42 NAYIEVVA-QKARAAAEESDKRIING--DARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVM 118 (493)
Q Consensus 42 na~~~~~~-~~al~~A~~~d~~~~~~--~~~pL~GiPi~vKD~~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~ 118 (493)
T Consensus 2 ~~WI~l~~~~~l~~~a~~L~~~~~~~dp~~LPL~GvPFAVKDNIDVaGlpTTAACP~FA-Y~P~~dA~vVa~L~aAGAiv 80 (582)
T TIGR02713 2 EAWISLLSEEDLLAQAAALEARKAEADPERLPLYGVPFAVKDNIDVAGLPTTAACPAFA-YTPEEDATVVARLRAAGAIV 80 (582)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHH-CCCCCCHHHHHHHHHCCCEE
T ss_conf 64654289799999999999862467755367655504660663446775354461440-55446859999999749804
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 11100000135665322223433566767656655445554445421001233432243211211113055411101154
Q gi|254780978|r 119 LGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKP 198 (493)
Q Consensus 119 ~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGSs~G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKP 198 (493)
T Consensus 81 ~GKTNLDQFATGLVGTRSPYG~vrnAf~~~-----yiSGGSSSGSAVaVA~G~V~FaLGTDTAGSGRVPAalNNlVGLKP 155 (582)
T TIGR02713 81 VGKTNLDQFATGLVGTRSPYGAVRNAFDPA-----YISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNLVGLKP 155 (582)
T ss_pred ECCCCCCHHHCCCCCCCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHCCCEEECC
T ss_conf 115475301005687413875468886745-----588974068999998510001113345666553455578500001
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54100011233222212123544322023446653022467431011112465310124443222222343444433320
Q gi|254780978|r 199 TYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLS 278 (493)
Q Consensus 199 T~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~d~~D~~~~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~ 278 (493)
T Consensus 156 t~G~~S~~GvVPACRsLDCvSiFA~~v~dA~~v~~~~A~~D~~DpySR~~~~~~--~~~~~~p~~~rvGVP~-~~~~fFg 232 (582)
T TIGR02713 156 TKGLVSTTGVVPACRSLDCVSIFALTVADAEQVLRIAAAYDARDPYSRRVPLPA--AALRRLPPKPRVGVPR-AQLEFFG 232 (582)
T ss_pred CCCCCCCCCCCHHHHHCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCCCEEECCC-CCCHHCC
T ss_conf 565625878520242278320010577899999999708777785567777764--1003478976772267-5700025
Q ss_pred H-HHHHHHHHHHHHHHHHH-HHCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH---H
Q ss_conf 1-45655665665433221-10135688721-45555444445678988877653331031002431024554321---0
Q gi|254780978|r 279 P-TIDKTWQQGISWLKDAG-AKIVEISLPHT-QYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTR---S 352 (493)
Q Consensus 279 ~-~v~~~~~~ai~~L~~~G-~~vvev~~p~~-~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~ 352 (493)
T Consensus 233 D~~~~~~f~~A~~~L~~~G~~~~v~iDf~Pf~e~A~lLYeGPWVAERy~Av~~-----------------f~~~~p~~~~ 295 (582)
T TIGR02713 233 DSQAEAAFAAAVERLEALGLVEVVEIDFAPFLETAALLYEGPWVAERYAAVGE-----------------FVEAQPDDDK 295 (582)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHH-----------------HHHCCCCCCC
T ss_conf 67889999999999984598179972873689999973268018999999999-----------------9862888777
Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 00014666665302333332000122334578999999999999863998999179989998776334673257887643
Q gi|254780978|r 353 IGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEENNSGSMGHIYND 432 (493)
Q Consensus 353 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~ 432 (493)
T Consensus 296 ~~~~PvVR~I~~~A~~~-----sA~DaF~a~YrL~~L~~~~~~~~~-~~D~L~vPTaP~~p-T~~~v~adPv~~N-s~LG 367 (582)
T TIGR02713 296 DALDPVVRGIITSAERF-----SAADAFAAEYRLAELRRKAEALLA-GVDVLLVPTAPTHP-TIEEVLADPVGLN-SRLG 367 (582)
T ss_pred CCCCCHHHHHHHCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCC-CHHHHHHCHHHHH-HHCC
T ss_conf 77761178987301578-----889999999999999999999984-58888427666712-2899861900544-6368
Q ss_pred HHHHHHHHHCCCEEEEEEEECCCC--CE-EEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 789999987898376840355999--83-79999518998799999999999992
Q gi|254780978|r 433 VFTVAVNMAGLPAISVPAALCEKK--MP-LGLQLIGQPFREETLFSVGQIIEKEA 484 (493)
Q Consensus 433 ~~t~~~N~~G~PaisiP~G~~~~G--LP-vGiQiig~~~~D~~lL~~a~~~E~~~ 484 (493)
T Consensus 368 ~YTNFVNLlDl~A~AvPAgfR~DG~~LPafGvTLigpAf~D~~La~lg~~~~~~~ 422 (582)
T TIGR02713 368 TYTNFVNLLDLSAVAVPAGFRSDGAQLPAFGVTLIGPAFHDAALASLGARLQAAS 422 (582)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 5002688886655304767676701067434012356777568999999846555