HHsearch results for GI: 254780978 and protein with PDBid: 2gi3_A
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structural genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=0 Score=823.78 Aligned_cols=466 Identities=41% Similarity=0.731 Sum_probs=420.0
Q ss_pred CCCCH--HCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEHH
Q ss_conf 98413--4509999999996898789999999999999688555899988899999999999999788898866121223
Q gi|254780978|r 1 MSELN--FMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGDARDLEGIPIGI 78 (493)
Q Consensus 1 m~~~~--~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~pL~GiPi~v 78 (493)
|.|+. .+++. +++|.+++|++||+++||+||+++|+.+|||+++++|.+++ +.+|||||||+|
T Consensus 2 ~~~~~~~~~~i~---~~~~~~~~~~~~l~~~~l~ri~~~n~~lna~~~~~~~~a~~------------~~gpL~GvPi~v 66 (476)
T 2gi3_A 2 MIDLDFRKLTIE---ECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVE------------KKGKFWGIPVAI 66 (476)
T ss_dssp CSCSCGGGCCHH---HHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCC------------CCSTTTTCEEEE
T ss_pred CCCCCHHHHHHH---HHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHH------------CCCCCCCCEEEE
T ss_conf 855660586999---99983888899999999999998788589899919878601------------049988897988
Q ss_pred HHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20000487855330376515754443210468887400001110000013566532222343356676765665544555
Q gi|254780978|r 79 KDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGG 158 (493)
Q Consensus 79 KD~~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GG 158 (493)
||+|+++|++||+||.+++++++.+||++|++||++||||+||||||||+++.+|+|++||+|+||||+. ++|||
T Consensus 67 KD~~~~~g~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~Gktn~~e~~~~~~~~~~~~g~t~np~~~~-----~~~GG 141 (476)
T 2gi3_A 67 KDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLE-----RVPGG 141 (476)
T ss_dssp ETTBCCSSSCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTT-----BCCCS
T ss_pred ECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCC
T ss_conf 8462767986586587566899998879999999889989996168744567886676877877961257-----88899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 44454210012334322432112111130554111011545410001123322221212354432202344665302246
Q gi|254780978|r 159 SSGGSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGY 238 (493)
Q Consensus 159 Ss~G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~ 238 (493)
||||||++||+|++|++||||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+++
T Consensus 142 SSgGsaaavAag~~~~a~GtD~gGSiR~PAa~~Gv~G~KPt~G~is~~g~~~~~~~~d~~GpmaRsv~D~alll~vi~g~ 221 (476)
T 2gi3_A 142 SSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGR 221 (476)
T ss_dssp SSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSC
T ss_pred CCCHHHHHHCCCCCCEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCC
T ss_conf 87375776306985468604898521155787194478189988789998887888896276368999999999986088
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 74310111124653101244432222223434444333201456556656654332211013568872145555444445
Q gi|254780978|r 239 DECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIIS 318 (493)
Q Consensus 239 d~~D~~~~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~~~ 318 (493)
|+.|+.+...+.+ +......+++++||+++.++....+++++.++++++++.|+++|++|+|+++|.+......++.+.
T Consensus 222 d~~d~~~~~~~~~-~~~~~~~~~~~~ri~~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~V~ev~~p~~~~~~~~~~~i~ 300 (476)
T 2gi3_A 222 DENDATTVNRKVD-FLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATYYVIA 300 (476)
T ss_dssp BTTBTTCCSCCCC-SSTTTTSCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHH
T ss_pred CCCCCCCCCCCCC-HHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 8432322467763-033302575566255421445678999999999999999998899899927986677899999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67898887765333103100243102455432100001466666530233333200012233457899999999999986
Q gi|254780978|r 319 PAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFE 398 (493)
Q Consensus 319 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~ 398 (493)
..|+..++..|++..+..+.....+.+++...+...+++.++.++..+....+..+.+..+.++.+.+..+.+.+.++|.
T Consensus 301 ~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (476)
T 2gi3_A 301 PAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLS 380 (476)
T ss_dssp HHHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999889874331011101344389999863101238899999983320004688999999987767888889999864
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 39989991799899987763346732578876437899999878983768403559998379999518998799999999
Q gi|254780978|r 399 QGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQ 478 (493)
Q Consensus 399 ~~~D~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~ 478 (493)
+ ||+||+||++.+|+++++..+ .........||.++|++|+|+++||+|++ +|||+||||||++|+|++||++|+
T Consensus 381 ~-~D~ll~Pt~~~~a~~~~~~~~---~~~~~~~~~~t~~~Nl~G~PaisvP~G~~-~GlPvGvQlig~~~~D~~LL~~A~ 455 (476)
T 2gi3_A 381 Q-YDAILTPTSPVTAFKIGEIKD---PLTYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVGVQVIGRRFADGKVFRIAR 455 (476)
T ss_dssp H-SSEEEEESCSSCCCBTTTCCC---HHHHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECCTTCHHHHHHHHH
T ss_pred C-CCEEEECCCCCCCCCCCCCCC---HHHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 8-999981898887777665566---68776555888999997898299858789-997875888899999899999999
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 99999257797888
Q gi|254780978|r 479 IIEKEAGYFRPHKW 492 (493)
Q Consensus 479 ~~E~~~~~~~pp~~ 492 (493)
+|||+++|++.+.|
T Consensus 456 ~~E~~~~~~~~~~~ 469 (476)
T 2gi3_A 456 AIEKNSPYNENGMF 469 (476)
T ss_dssp HHHHHCTTSBTTBC
T ss_pred HHHHCCCCCCCCCC
T ss_conf 99970897757999