HHsearch results for GI: 254780978 and protein with PDBid: 3ip4_A

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00  E-value=0  Score=864.67  Aligned_cols=480  Identities=45%  Similarity=0.760  Sum_probs=445.6

Q ss_pred             CCCCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCC-CCCCCCCEEHHH
Q ss_conf             9841345099999999968987899999999999996885558999888999999999999997888-988661212232
Q gi|254780978|r    1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGD-ARDLEGIPIGIK   79 (493)
Q Consensus         1 m~~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~-~~pL~GiPi~vK   79 (493)
                      |+ +.+.||.||+++|++|++||+||+++|++||+++|+.+|||+++++|+||++|+++|+++++|+ .+|||||||+||
T Consensus         1 m~-~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~vK   79 (485)
T 3ip4_A            1 MS-IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIK   79 (485)
T ss_dssp             CC-GGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEE
T ss_pred             CC-CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
T ss_conf             99-85789999999998599989999999999999869864399996999999999999999977999998486879987


Q ss_pred             HHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00004878553303765157544432104688874000011100000135665322223433566767656655445554
Q gi|254780978|r   80 DCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGS  159 (493)
Q Consensus        80 D~~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGS  159 (493)
                      |+|+|+|++||+|+.+++++++.+|+++|++|+++|||++||||||||+++.+|.|.+||+|+||||+.     ++||||
T Consensus        80 D~~~v~G~~tt~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~-----~~~GGS  154 (485)
T 3ip4_A           80 DNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHK-----AVPGGS  154 (485)
T ss_dssp             TTBCBTTBCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTT-----BCCCSS
T ss_pred             CCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCC
T ss_conf             560668971587784440689853202455576279774455677540466677885556776875443-----456898


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             44542100123343224321121111305541110115454100011233222212123544322023446653022467
Q gi|254780978|r  160 SGGSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYD  239 (493)
Q Consensus       160 s~G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~d  239 (493)
                      |||+|++||+|++|+|||||||||||+||+||||||||||+||||+.|++|+++++||+|||||||+|+++++++|+++|
T Consensus       155 SgGsaaavA~g~~~~alGtD~~GSiR~PAa~~G~~g~kpt~g~i~~~G~~~~~~~~d~~Gpmar~v~D~~l~l~~~~g~d  234 (485)
T 3ip4_A          155 SGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGAD  234 (485)
T ss_dssp             SHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCC
T ss_pred             CCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCC
T ss_conf             61007788761577688627885001237984945772899877899987767777831312299999999997301898


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             43101111246531012444322222234344443332014565566566543322110135688721455554444456
Q gi|254780978|r  240 ECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISP  319 (493)
Q Consensus       240 ~~D~~~~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~~~~  319 (493)
                      +.|+.+.+.+..++...+..+++++|||++.+++...+++++.++++++++.|+++|++|+|+++|......+.++.+..
T Consensus       235 ~~d~~s~~~~~~~~~~~~~~~lk~lrIg~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~V~ev~~p~~~~~~~~~~~~~~  314 (485)
T 3ip4_A          235 VNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIAS  314 (485)
T ss_dssp             TTCTTSCCCCCCCCSTTTTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             43344678886453556256866878999720215778989999999999999978999999379861556788999999


Q ss_pred             HHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7898887765333103100-243102455432100001466666530233333200012233457899999999999986
Q gi|254780978|r  320 AEASSNLARYDGVRYGLRV-EGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFE  398 (493)
Q Consensus       320 ~e~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~  398 (493)
                      .++..++..|++.++.... ...++.+++...+...++++++.++..+....+..+.+..|.++.+.+..+...+.++|.
T Consensus       315 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~  394 (485)
T 3ip4_A          315 SEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFE  394 (485)
T ss_dssp             HHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99998898755233110133313699999864232028899999986555532235899999999876666668999872


Q ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             39989991799899987763346732578876437899999878983768403559998379999518998799999999
Q gi|254780978|r  399 QGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQ  478 (493)
Q Consensus       399 ~~~D~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~  478 (493)
                       +||+||+||++.+|+++++....  ....+....||.++|++|+|+++||+|+. +|||+||||||++|+|++||++|+
T Consensus       395 -~~D~ll~Pt~~~~a~~~~~~~~~--~~~~~~~~~~t~~~Nl~G~PaisvP~G~~-~GlPvGvQivg~~~~D~~LL~iA~  470 (485)
T 3ip4_A          395 -NYDVVVGPTAPTTAFNLGEEIDD--PLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRVAY  470 (485)
T ss_dssp             -TCSEEEEESSSSSCCBTTTSTTC--HHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHH
T ss_pred             -CCCEEEECCCCCCCCCCCCCCCC--HHHHHHCCHHHHHHHHHCCCEEEEECCCC-CCCCEEEEEECCCCCHHHHHHHHH
T ss_conf             -59999957988777886533478--88887400899999997899299978789-998876778899999999999999


Q ss_pred             HHHHHHCCCCCC
Q ss_conf             999992577978
Q gi|254780978|r  479 IIEKEAGYFRPH  490 (493)
Q Consensus       479 ~~E~~~~~~~pp  490 (493)
                      +||++++|++-+
T Consensus       471 ~~E~~~~~~~~~  482 (485)
T 3ip4_A          471 QYETQYNLHDVY  482 (485)
T ss_dssp             HHHHHSCCTTTG
T ss_pred             HHHHCCCCCCCC
T ss_conf             999618966379