HHsearch results for GI: 254780978 and protein with PDBid: 3kfu_E
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=0 Score=822.15 Aligned_cols=466 Identities=40% Similarity=0.687 Sum_probs=416.4
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHCCCCC
Q ss_conf 50999999999689878999999999999968855589998889999999999999978889886612122320000487
Q gi|254780978|r 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGDARDLEGIPIGIKDCFATKG 86 (493)
Q Consensus 7 ~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~pL~GiPi~vKD~~~v~g 86 (493)
|++.||++++++|++||+||+++||+||+++|+.+|||++++ |+|+++|+++| +.+|||||||+|||+|+++|
T Consensus 1 m~a~~l~~~~~~g~~t~~~~~~~~l~ri~~~~~~~na~~~~~-~~a~~~A~~~d------~~~pL~GiP~~vKD~~~~~G 73 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVD------PGLPLAGLVVAVKDNIATRG 73 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSC------CSCTTTTCEEEEETTBCCTT
T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECC-HHHHHHHHHCC------CCCCCCCCEEEEECCCCCCC
T ss_conf 929999999986998799999999999998789763999869-99999998348------99794889888874748789
Q ss_pred CCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 85533037651575444321046888740000111000001356653222234335667676566554455544454210
Q gi|254780978|r 87 IHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAA 166 (493)
Q Consensus 87 ~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGSs~G~a~a 166 (493)
++||+|+..++++++.+||++|++||++|||++||||||||+++.+|.|.+||+|+||||+. ++|||||||||++
T Consensus 74 ~~tt~Gs~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~-----~~~GGSS~Gsaaa 148 (471)
T 3kfu_E 74 LRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPD-----RVPGGSSGGSAAA 148 (471)
T ss_dssp SCCCTTCSTTTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTT-----BCCCSSSHHHHHH
T ss_pred CCCCCCCHHHCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCHHHHH
T ss_conf 78475587553799997637999876278766443456644356555543567788975588-----8889887418889
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 01233432243211211113055411101154541000112332222121235443220234466530224674310111
Q gi|254780978|r 167 VAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCV 246 (493)
Q Consensus 167 va~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~d~~D~~~~ 246 (493)
||+|++|+|||||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+|+|+.|+.+.
T Consensus 149 va~g~~~~aiGtD~gGSiR~PAa~~G~~g~kPt~g~i~~~g~~~~~~~~d~~GpmaRtv~D~al~l~~~~g~d~~d~~~~ 228 (471)
T 3kfu_E 149 LAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSL 228 (471)
T ss_dssp HHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCC
T ss_pred HHCCCCCEEEECCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 86588656854588815557799859557838899887999887777878128700849999865430148886644456
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12465310124443222222343444433320145655665665433221101356887214555544444567898887
Q gi|254780978|r 247 NLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISPAEASSNL 326 (493)
Q Consensus 247 ~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~~~~~e~~~~l 326 (493)
+.+.. .........++.+++++++. +..+++++.++++++++.|+++|++|+++++|.+.+....++.+...|+..++
T Consensus 229 ~~~~~-~~~~~~~~~~~~~i~~~~~~-~~~~~~~v~~~~~~a~~~L~~~G~~v~~~~~p~~~~~~~~~~~i~~~e~~~~l 306 (471)
T 3kfu_E 229 DLPPR-FQEALEGPLPPLRLGVVREA-LAGNSPGVERALEEALKVFRELGLSVREVSWPSLPQALAAYYILAPAEASSNL 306 (471)
T ss_dssp CCCCC-TTCCSCCCCSSCEEEEEGGG-TTTCCHHHHHHHHHHHHHHHTTTCEEEEECCTTGGGHHHHHHHHHHHHHHHHG
T ss_pred CCCCC-HHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 77831-01233113320223433422-46899999999999999999759979990687558899999999999999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 76533310310024310245543210000146666653023333320001223345789999999999998639989991
Q gi|254780978|r 327 ARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILT 406 (493)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~lI~ 406 (493)
.+|++..+..........+.++..+ ..++++++.++..+....+..+.+..+.++.+.++.+++.+.++|. +||+||+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~-~~D~ll~ 384 (471)
T 3kfu_E 307 ARYDGTLYGRRAAGEEVEGMMEATR-ALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFR-EVDLLLL 384 (471)
T ss_dssp GGCSTTTTSCCCCCSSSHHHHHHHH-TTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTT-TCSEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHH-HHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEE
T ss_conf 9863212121100134677888778-7618899999985221125167999999999999988999999864-7999995
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 79989998776334673257887643789999987898376840355999837999951899879999999999999257
Q gi|254780978|r 407 PTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEKEAGY 486 (493)
Q Consensus 407 Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~~~E~~~~~ 486 (493)
||++.+|++++...+ ....+....||.++|++|+|++|||+|+. +|||+||||||++|+|++||++|++||++++|
T Consensus 385 Pt~~~~a~~~~~~~~---~~~~~~~~~~t~~~N~~G~PaisvP~G~~-~glPvGvQiig~~~~D~~LL~iA~~~E~a~~~ 460 (471)
T 3kfu_E 385 PTTPHPAFPFGARRD---PLAMYREDLYTVGANLTGLPALSFPAGFE-GHLPVGLQLLAPWGEDERLLRAALAFEEATAR 460 (471)
T ss_dssp ESCSSSCCBTTTTCS---HHHHHGGGTTTHHHHHHCCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCC---HHHHHHCCHHHHHHHHHCCCEEEEECCCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 898988877766578---68875033587877985998499868778-99887688989999999999999999985688
Q ss_pred --CCCCCC
Q ss_conf --797888
Q gi|254780978|r 487 --FRPHKW 492 (493)
Q Consensus 487 --~~pp~~ 492 (493)
+|||.|
T Consensus 461 ~~~~pP~~ 468 (471)
T 3kfu_E 461 AHLKAPLG 468 (471)
T ss_dssp CCCCTTCC
T ss_pred CCCCCCCC
T ss_conf 88999981