Query gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Candidatus Liberibacter asiaticus str. psy62] Match_columns 493 No_of_seqs 211 out of 7147 Neff 9.3 Searched_HMMs 23785 Date Wed Jun 1 00:04:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780978.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 0 0 864.7 35.9 480 1-490 1-482 (485) 2 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 0 0 843.1 31.1 473 4-490 2-476 (478) 3 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 0 0 822.1 29.5 466 7-492 1-468 (471) 4 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 0 0 823.8 20.7 466 1-492 2-469 (476) 5 2wj1_A Fatty-acid amide hydrol 100.0 0 0 794.7 28.8 461 3-490 67-572 (573) 6 1m22_A Peptide amidase, PAM; e 100.0 0 0 783.6 31.6 468 2-492 6-492 (503) 7 3a2q_A 6-aminohexanoate-cyclic 100.0 0 0 768.1 30.6 460 1-491 1-482 (493) 8 2dc0_A Probable amidase; struc 100.0 0 0 746.6 29.8 430 7-485 1-434 (434) 9 3a1k_A Amidase; AS family enzy 100.0 0 0 742.5 19.2 472 9-491 26-508 (521) 10 1o9p_A Malonamidase E2; malona 100.0 0 0 709.4 28.7 409 7-486 2-412 (414) 11 3obf_A Putative transcriptiona 72.3 4.4 0.00018 18.7 6.0 48 441-489 119-176 (176) 12 1tf1_A Negative regulator of a 59.8 7.6 0.00032 17.1 5.6 49 441-490 140-198 (198) 13 2hw2_A Rifampin ADP-ribosyl tr 52.5 10 0.00042 16.4 3.2 38 262-301 104-142 (143) 14 1ysp_A Transcriptional regulat 46.1 13 0.00053 15.7 5.6 49 441-490 120-178 (181) 15 2o99_A Acetate operon represso 43.7 14 0.00057 15.5 4.3 47 441-488 124-180 (182) 16 3d3o_A Putative transcriptiona 36.8 10 0.00043 16.3 1.2 48 442-489 122-177 (178) 17 1h1j_S THO1 protein; SAP domai 36.3 13 0.00056 15.5 1.7 36 2-37 3-38 (51) 18 1kae_A HDH, histidinol dehydro 35.0 19 0.00078 14.6 2.3 33 4-36 9-45 (434) 19 1mkm_A ICLR transcriptional re 31.3 21 0.00089 14.2 5.7 45 441-486 195-249 (249) 20 3d64_A Adenosylhomocysteinase; 28.0 15 0.00062 15.2 0.8 36 66-119 68-103 (494) 21 3n58_A Adenosylhomocysteinase; 27.7 16 0.00068 15.0 1.0 36 66-119 38-73 (464) 22 1zrj_A E1B-55KDA-associated pr 27.0 25 0.0011 13.7 2.0 35 3-37 9-43 (50) 23 2do1_A Nuclear protein HCC-1; 26.7 20 0.00083 14.4 1.3 33 3-35 9-41 (55) 24 3odg_A Xanthosine phosphorylas 25.7 15 0.00061 15.3 0.5 10 291-300 212-221 (287) 25 2g7u_A Transcriptional regulat 24.7 28 0.0012 13.5 6.2 46 441-487 200-256 (257) 26 1iqv_A Ribosomal protein S7; R 23.8 29 0.0012 13.4 1.9 38 76-114 34-73 (218) 27 1sy7_A Catalase 1; heme oxidat 22.3 31 0.0013 13.2 2.4 20 463-482 540-559 (715) 28 3khs_A Purine nucleoside phosp 21.9 16 0.00069 15.0 0.1 11 113-123 61-71 (285) 29 1ysq_A HTH-type transcriptiona 21.8 31 0.0013 13.1 2.5 48 441-488 128-184 (193) 30 1ewq_A DNA mismatch repair pro 21.6 30 0.0013 13.2 1.4 60 18-80 10-79 (765) No 1 >3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Probab=100.00 E-value=0 Score=864.67 Aligned_cols=480 Identities=45% Similarity=0.760 Sum_probs=445.6 Q ss_pred CCCCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCC-CCCCCCCEEHHH Q ss_conf 9841345099999999968987899999999999996885558999888999999999999997888-988661212232 Q gi|254780978|r 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGD-ARDLEGIPIGIK 79 (493) Q Consensus 1 m~~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~-~~pL~GiPi~vK 79 (493) |+ +.+.||.||+++|++|++||+||+++|++||+++|+.+|||+++++|+||++|+++|+++++|+ .+|||||||+|| T Consensus 1 m~-~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~vK 79 (485) T 3ip4_A 1 MS-IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIK 79 (485) T ss_dssp CC-GGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEE T ss_pred CC-CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE T ss_conf 99-85789999999998599989999999999999869864399996999999999999999977999998486879987 Q ss_pred HHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 00004878553303765157544432104688874000011100000135665322223433566767656655445554 Q gi|254780978|r 80 DCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGS 159 (493) Q Consensus 80 D~~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGS 159 (493) |+|+|+|++||+|+.+++++++.+|+++|++|+++|||++||||||||+++.+|.|.+||+|+||||+. ++|||| T Consensus 80 D~~~v~G~~tt~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~-----~~~GGS 154 (485) T 3ip4_A 80 DNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHK-----AVPGGS 154 (485) T ss_dssp TTBCBTTBCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTT-----BCCCSS T ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCC T ss_conf 560668971587784440689853202455576279774455677540466677885556776875443-----456898 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 44542100123343224321121111305541110115454100011233222212123544322023446653022467 Q gi|254780978|r 160 SGGSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYD 239 (493) Q Consensus 160 s~G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~d 239 (493) |||+|++||+|++|+|||||||||||+||+||||||||||+||||+.|++|+++++||+|||||||+|+++++++|+++| T Consensus 155 SgGsaaavA~g~~~~alGtD~~GSiR~PAa~~G~~g~kpt~g~i~~~G~~~~~~~~d~~Gpmar~v~D~~l~l~~~~g~d 234 (485) T 3ip4_A 155 SGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGAD 234 (485) T ss_dssp SHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCC T ss_pred CCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCC T ss_conf 61007788761577688627885001237984945772899877899987767777831312299999999997301898 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 43101111246531012444322222234344443332014565566566543322110135688721455554444456 Q gi|254780978|r 240 ECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISP 319 (493) Q Consensus 240 ~~D~~~~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~~~~ 319 (493) +.|+.+.+.+..++...+..+++++|||++.+++...+++++.++++++++.|+++|++|+|+++|......+.++.+.. T Consensus 235 ~~d~~s~~~~~~~~~~~~~~~lk~lrIg~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~V~ev~~p~~~~~~~~~~~~~~ 314 (485) T 3ip4_A 235 VNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIAS 314 (485) T ss_dssp TTCTTSCCCCCCCCSTTTTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHH T ss_conf 43344678886453556256866878999720215778989999999999999978999999379861556788999999 Q ss_pred HHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7898887765333103100-243102455432100001466666530233333200012233457899999999999986 Q gi|254780978|r 320 AEASSNLARYDGVRYGLRV-EGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFE 398 (493) Q Consensus 320 ~e~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~ 398 (493) .++..++..|++.++.... ...++.+++...+...++++++.++..+....+..+.+..|.++.+.+..+...+.++|. T Consensus 315 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~ 394 (485) T 3ip4_A 315 SEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFE 394 (485) T ss_dssp HHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99998898755233110133313699999864232028899999986555532235899999999876666668999872 Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHH Q ss_conf 39989991799899987763346732578876437899999878983768403559998379999518998799999999 Q gi|254780978|r 399 QGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQ 478 (493) Q Consensus 399 ~~~D~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~ 478 (493) +||+||+||++.+|+++++.... ....+....||.++|++|+|+++||+|+. +|||+||||||++|+|++||++|+ T Consensus 395 -~~D~ll~Pt~~~~a~~~~~~~~~--~~~~~~~~~~t~~~Nl~G~PaisvP~G~~-~GlPvGvQivg~~~~D~~LL~iA~ 470 (485) T 3ip4_A 395 -NYDVVVGPTAPTTAFNLGEEIDD--PLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRVAY 470 (485) T ss_dssp -TCSEEEEESSSSSCCBTTTSTTC--HHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHH T ss_pred -CCCEEEECCCCCCCCCCCCCCCC--HHHHHHCCHHHHHHHHHCCCEEEEECCCC-CCCCEEEEEECCCCCHHHHHHHHH T ss_conf -59999957988777886533478--88887400899999997899299978789-998876778899999999999999 Q ss_pred HHHHHHCCCCCC Q ss_conf 999992577978 Q gi|254780978|r 479 IIEKEAGYFRPH 490 (493) Q Consensus 479 ~~E~~~~~~~pp 490 (493) +||++++|++-+ T Consensus 471 ~~E~~~~~~~~~ 482 (485) T 3ip4_A 471 QYETQYNLHDVY 482 (485) T ss_dssp HHHHHSCCTTTG T ss_pred HHHHCCCCCCCC T ss_conf 999618966379 No 2 >3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Probab=100.00 E-value=0 Score=843.12 Aligned_cols=473 Identities=46% Similarity=0.771 Sum_probs=438.1 Q ss_pred CHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHCC Q ss_conf 13450999999999689878999999999999968855589998889999999999999978889886612122320000 Q gi|254780978|r 4 LNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGDARDLEGIPIGIKDCFA 83 (493) Q Consensus 4 ~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~pL~GiPi~vKD~~~ 83 (493) |..+||+||+++|++|++||+||+++|++||+++|+.+|||+++++|+||++|+++|+ +.+|||||||+|||+|+ T Consensus 2 l~~~s~~~l~~~~~~g~~s~~~v~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~-----~~~pL~GvPi~vKD~~~ 76 (478) T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKE-----RELPLFGIPIAVKDNIL 76 (478) T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCC-----TTSTTTTCEEEEETTBC T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCC-----CCCCCCCCEEEEECCCC T ss_conf 4341199999999869997999999999999986986419998296999999985597-----89994888788886647 Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 48785533037651575444321046888740000111000001356653222234335667676566554455544454 Q gi|254780978|r 84 TKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGS 163 (493) Q Consensus 84 v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGSs~G~ 163 (493) |+|++||+|+.+++++++.+|+++|++||++|||++||||+|||+++.+|.|.+||+|+||||+. ++|||||||| T Consensus 77 v~G~~tt~Gs~~~~~~~~~~~~~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~np~~~~-----~~pGGSSgGs 151 (478) T 3h0l_A 77 VEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLE-----RVPGGSSGGS 151 (478) T ss_dssp CTTSBCCTTCGGGTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTT-----BCCCSSSHHH T ss_pred CCCCCCCCCCHHHCCCCCCCCCEEEEHHHHCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCH T ss_conf 78975487586455799976550011276489877246322221466654565567878887744-----5877888703 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC Q ss_conf 21001233432243211211113055411101154541000112332222121235443220234466530224674310 Q gi|254780978|r 164 SAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDA 243 (493) Q Consensus 164 a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~d~~D~ 243 (493) ||+||+|++++|||||||||||+||+||||||||||+||||+.|++|+++++||+|||||||+|+++++++|.|+|+.|+ T Consensus 152 aaavAag~~~~aiGtD~gGSiR~PAa~~Gv~G~kPt~g~vs~~G~~~~~~~~dtvGpmaRsv~D~a~~~~~l~g~d~~d~ 231 (478) T 3h0l_A 152 AASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDS 231 (478) T ss_dssp HHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCT T ss_pred HHHHHCCCEEEEECCCCCCCCCHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCC T ss_conf 33211487356501687861202179739546728898667999888776668537625329999999999709987786 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 11112465310124443222222343444433320145655665665433221101356887214555544444567898 Q gi|254780978|r 244 TCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISPAEAS 323 (493) Q Consensus 244 ~~~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~~~~~e~~ 323 (493) .+...+.+++...+..+++++||||+.+++...+++++.++++++++.|+++|++|+|+++|......+.|+.+...|+. T Consensus 232 ~s~~~~~~~~~~~~~~~~~~lrIg~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~ei~~p~~~~~~~~~~~~~~~e~~ 311 (478) T 3h0l_A 232 TSAKVPVPEWSEEVKKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELEKEGFEIKEVSLPHVKYSIPTYYIIAPSEAS 311 (478) T ss_dssp TSCCCCCCCHHHHTTCCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHH T ss_conf 54468872155663136678789998612145589999999999999999789999993686456678899999999999 Q ss_pred HHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 88776533310310-02431024554321000014666665302333332000122334578999999999999863998 Q gi|254780978|r 324 SNLARYDGVRYGLR-VEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVD 402 (493) Q Consensus 324 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D 402 (493) .++..|++..+..+ .+..++++.+.+.+...+++.+..+++.+....+....+++|.++++.|..++..+.++|. ++| T Consensus 312 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~-~~D 390 (478) T 3h0l_A 312 SNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFE-EVD 390 (478) T ss_dssp HHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHHHHHTT-TCS T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCC T ss_conf 8799764310002122067899999863122059899999996544315301599999999999999999999862-799 Q ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHH Q ss_conf 99917998999877633467325788764378999998789837684035599983799995189987999999999999 Q gi|254780978|r 403 VILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEK 482 (493) Q Consensus 403 ~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~~~E~ 482 (493) +||+|+++.+|+++++.... ....+....||.++|++|+|++|||+|+. +|||+||||||++|+|++||++|++||+ T Consensus 391 ~li~Pt~~~~a~~~~~~~~~--~~~~~~~~~~T~~~Nl~G~PaisvP~G~~-~GlPvGvQlig~~~~D~~LL~vA~~~E~ 467 (478) T 3h0l_A 391 VIASPTTPTLPFKFGERLEN--PIEMYLSDILTVPANLAGLPAISIPIAWK-DGLPVGGQLIGKHWDETTLLQISYLWEQ 467 (478) T ss_dssp EEEEESCSSSCCBTTTTSSS--HHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEEECTTCHHHHHHHHHHHHH T ss_pred EEEECCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCCEEEEEECCCCCHHHHHHHHHHHHH T ss_conf 99958988878776555478--79987510798888986899499847888-9965648888999999999999999997 Q ss_pred HHCCC-CCC Q ss_conf 92577-978 Q gi|254780978|r 483 EAGYF-RPH 490 (493) Q Consensus 483 ~~~~~-~pp 490 (493) +++|+ |+| T Consensus 468 ~~~~~~~~P 476 (478) T 3h0l_A 468 KFKHYEKIP 476 (478) T ss_dssp HSCGGGCCS T ss_pred HCCCCCCCC T ss_conf 279999999 No 3 >3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Probab=100.00 E-value=0 Score=822.15 Aligned_cols=466 Identities=40% Similarity=0.687 Sum_probs=416.4 Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHCCCCC Q ss_conf 50999999999689878999999999999968855589998889999999999999978889886612122320000487 Q gi|254780978|r 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGDARDLEGIPIGIKDCFATKG 86 (493) Q Consensus 7 ~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~pL~GiPi~vKD~~~v~g 86 (493) |++.||++++++|++||+||+++||+||+++|+.+|||++++ |+|+++|+++| +.+|||||||+|||+|+++| T Consensus 1 m~a~~l~~~~~~g~~t~~~~~~~~l~ri~~~~~~~na~~~~~-~~a~~~A~~~d------~~~pL~GiP~~vKD~~~~~G 73 (471) T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVD------PGLPLAGLVVAVKDNIATRG 73 (471) T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSC------CSCTTTTCEEEEETTBCCTT T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECC-HHHHHHHHHCC------CCCCCCCCEEEEECCCCCCC T ss_conf 929999999986998799999999999998789763999869-99999998348------99794889888874748789 Q ss_pred CCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 85533037651575444321046888740000111000001356653222234335667676566554455544454210 Q gi|254780978|r 87 IHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAA 166 (493) Q Consensus 87 ~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGSs~G~a~a 166 (493) ++||+|+..++++++.+||++|++||++|||++||||||||+++.+|.|.+||+|+||||+. ++|||||||||++ T Consensus 74 ~~tt~Gs~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~-----~~~GGSS~Gsaaa 148 (471) T 3kfu_E 74 LRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPD-----RVPGGSSGGSAAA 148 (471) T ss_dssp SCCCTTCSTTTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTT-----BCCCSSSHHHHHH T ss_pred CCCCCCCHHHCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCHHHHH T ss_conf 78475587553799997637999876278766443456644356555543567788975588-----8889887418889 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 01233432243211211113055411101154541000112332222121235443220234466530224674310111 Q gi|254780978|r 167 VAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCV 246 (493) Q Consensus 167 va~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~d~~D~~~~ 246 (493) ||+|++|+|||||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+|+|+.|+.+. T Consensus 149 va~g~~~~aiGtD~gGSiR~PAa~~G~~g~kPt~g~i~~~g~~~~~~~~d~~GpmaRtv~D~al~l~~~~g~d~~d~~~~ 228 (471) T 3kfu_E 149 LAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSL 228 (471) T ss_dssp HHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCC T ss_pred HHCCCCCEEEECCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC T ss_conf 86588656854588815557799859557838899887999887777878128700849999865430148886644456 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 12465310124443222222343444433320145655665665433221101356887214555544444567898887 Q gi|254780978|r 247 NLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISPAEASSNL 326 (493) Q Consensus 247 ~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~~~~~e~~~~l 326 (493) +.+.. .........++.+++++++. +..+++++.++++++++.|+++|++|+++++|.+.+....++.+...|+..++ T Consensus 229 ~~~~~-~~~~~~~~~~~~~i~~~~~~-~~~~~~~v~~~~~~a~~~L~~~G~~v~~~~~p~~~~~~~~~~~i~~~e~~~~l 306 (471) T 3kfu_E 229 DLPPR-FQEALEGPLPPLRLGVVREA-LAGNSPGVERALEEALKVFRELGLSVREVSWPSLPQALAAYYILAPAEASSNL 306 (471) T ss_dssp CCCCC-TTCCSCCCCSSCEEEEEGGG-TTTCCHHHHHHHHHHHHHHHTTTCEEEEECCTTGGGHHHHHHHHHHHHHHHHG T ss_pred CCCCC-HHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 77831-01233113320223433422-46899999999999999999759979990687558899999999999999999 Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 76533310310024310245543210000146666653023333320001223345789999999999998639989991 Q gi|254780978|r 327 ARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILT 406 (493) Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~lI~ 406 (493) .+|++..+..........+.++..+ ..++++++.++..+....+..+.+..+.++.+.++.+++.+.++|. +||+||+ T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~-~~D~ll~ 384 (471) T 3kfu_E 307 ARYDGTLYGRRAAGEEVEGMMEATR-ALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFR-EVDLLLL 384 (471) T ss_dssp GGCSTTTTSCCCCCSSSHHHHHHHH-TTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTT-TCSEEEE T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHH-HHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEE T ss_conf 9863212121100134677888778-7618899999985221125167999999999999988999999864-7999995 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC Q ss_conf 79989998776334673257887643789999987898376840355999837999951899879999999999999257 Q gi|254780978|r 407 PTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEKEAGY 486 (493) Q Consensus 407 Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~~~E~~~~~ 486 (493) ||++.+|++++...+ ....+....||.++|++|+|++|||+|+. +|||+||||||++|+|++||++|++||++++| T Consensus 385 Pt~~~~a~~~~~~~~---~~~~~~~~~~t~~~N~~G~PaisvP~G~~-~glPvGvQiig~~~~D~~LL~iA~~~E~a~~~ 460 (471) T 3kfu_E 385 PTTPHPAFPFGARRD---PLAMYREDLYTVGANLTGLPALSFPAGFE-GHLPVGLQLLAPWGEDERLLRAALAFEEATAR 460 (471) T ss_dssp ESCSSSCCBTTTTCS---HHHHHGGGTTTHHHHHHCCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHHHHHHHSSC T ss_pred CCCCCCCCCCCCCCC---HHHHHHCCHHHHHHHHHCCCEEEEECCCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC T ss_conf 898988877766578---68875033587877985998499868778-99887688989999999999999999985688 Q ss_pred --CCCCCC Q ss_conf --797888 Q gi|254780978|r 487 --FRPHKW 492 (493) Q Consensus 487 --~~pp~~ 492 (493) +|||.| T Consensus 461 ~~~~pP~~ 468 (471) T 3kfu_E 461 AHLKAPLG 468 (471) T ss_dssp CCCCTTCC T ss_pred CCCCCCCC T ss_conf 88999981 No 4 >2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structural genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Probab=100.00 E-value=0 Score=823.78 Aligned_cols=466 Identities=41% Similarity=0.731 Sum_probs=420.0 Q ss_pred CCCCH--HCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEHH Q ss_conf 98413--4509999999996898789999999999999688555899988899999999999999788898866121223 Q gi|254780978|r 1 MSELN--FMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGDARDLEGIPIGI 78 (493) Q Consensus 1 m~~~~--~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~pL~GiPi~v 78 (493) |.|+. .+++. +++|.+++|++||+++||+||+++|+.+|||+++++|.+++ +.+|||||||+| T Consensus 2 ~~~~~~~~~~i~---~~~~~~~~~~~~l~~~~l~ri~~~n~~lna~~~~~~~~a~~------------~~gpL~GvPi~v 66 (476) T 2gi3_A 2 MIDLDFRKLTIE---ECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVE------------KKGKFWGIPVAI 66 (476) T ss_dssp CSCSCGGGCCHH---HHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCC------------CCSTTTTCEEEE T ss_pred CCCCCHHHHHHH---HHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHH------------CCCCCCCCEEEE T ss_conf 855660586999---99983888899999999999998788589899919878601------------049988897988 Q ss_pred HHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 20000487855330376515754443210468887400001110000013566532222343356676765665544555 Q gi|254780978|r 79 KDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGG 158 (493) Q Consensus 79 KD~~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GG 158 (493) ||+|+++|++||+||.+++++++.+||++|++||++||||+||||||||+++.+|+|++||+|+||||+. ++||| T Consensus 67 KD~~~~~g~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~Gktn~~e~~~~~~~~~~~~g~t~np~~~~-----~~~GG 141 (476) T 2gi3_A 67 KDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLE-----RVPGG 141 (476) T ss_dssp ETTBCCSSSCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTT-----BCCCS T ss_pred ECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCC T ss_conf 8462767986586587566899998879999999889989996168744567886676877877961257-----88899 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 44454210012334322432112111130554111011545410001123322221212354432202344665302246 Q gi|254780978|r 159 SSGGSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGY 238 (493) Q Consensus 159 Ss~G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~ 238 (493) ||||||++||+|++|++||||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+++ T Consensus 142 SSgGsaaavAag~~~~a~GtD~gGSiR~PAa~~Gv~G~KPt~G~is~~g~~~~~~~~d~~GpmaRsv~D~alll~vi~g~ 221 (476) T 2gi3_A 142 SSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGR 221 (476) T ss_dssp SSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSC T ss_pred CCCHHHHHHCCCCCCEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCC T ss_conf 87375776306985468604898521155787194478189988789998887888896276368999999999986088 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 74310111124653101244432222223434444333201456556656654332211013568872145555444445 Q gi|254780978|r 239 DECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIIS 318 (493) Q Consensus 239 d~~D~~~~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~~~ 318 (493) |+.|+.+...+.+ +......+++++||+++.++....+++++.++++++++.|+++|++|+|+++|.+......++.+. T Consensus 222 d~~d~~~~~~~~~-~~~~~~~~~~~~ri~~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~V~ev~~p~~~~~~~~~~~i~ 300 (476) T 2gi3_A 222 DENDATTVNRKVD-FLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATYYVIA 300 (476) T ss_dssp BTTBTTCCSCCCC-SSTTTTSCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHH T ss_pred CCCCCCCCCCCCC-HHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH T ss_conf 8432322467763-033302575566255421445678999999999999999998899899927986677899999999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 67898887765333103100243102455432100001466666530233333200012233457899999999999986 Q gi|254780978|r 319 PAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFE 398 (493) Q Consensus 319 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~ 398 (493) ..|+..++..|++..+..+.....+.+++...+...+++.++.++..+....+..+.+..+.++.+.+..+.+.+.++|. T Consensus 301 ~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (476) T 2gi3_A 301 PAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLS 380 (476) T ss_dssp HHHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999889874331011101344389999863101238899999983320004688999999987767888889999864 Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHH Q ss_conf 39989991799899987763346732578876437899999878983768403559998379999518998799999999 Q gi|254780978|r 399 QGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQ 478 (493) Q Consensus 399 ~~~D~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~ 478 (493) + ||+||+||++.+|+++++..+ .........||.++|++|+|+++||+|++ +|||+||||||++|+|++||++|+ T Consensus 381 ~-~D~ll~Pt~~~~a~~~~~~~~---~~~~~~~~~~t~~~Nl~G~PaisvP~G~~-~GlPvGvQlig~~~~D~~LL~~A~ 455 (476) T 2gi3_A 381 Q-YDAILTPTSPVTAFKIGEIKD---PLTYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVGVQVIGRRFADGKVFRIAR 455 (476) T ss_dssp H-SSEEEEESCSSCCCBTTTCCC---HHHHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECCTTCHHHHHHHHH T ss_pred C-CCEEEECCCCCCCCCCCCCCC---HHHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCCEEEEEECCCCCHHHHHHHHH T ss_conf 8-999981898887777665566---68776555888999997898299858789-997875888899999899999999 Q ss_pred HHHHHHCCCCCCCC Q ss_conf 99999257797888 Q gi|254780978|r 479 IIEKEAGYFRPHKW 492 (493) Q Consensus 479 ~~E~~~~~~~pp~~ 492 (493) +|||+++|++.+.| T Consensus 456 ~~E~~~~~~~~~~~ 469 (476) T 2gi3_A 456 AIEKNSPYNENGMF 469 (476) T ss_dssp HHHHHCTTSBTTBC T ss_pred HHHHCCCCCCCCCC T ss_conf 99970897757999 No 5 >2wj1_A Fatty-acid amide hydrolase 1; monotopic membrane protein, golgi apparatus, endoplasmic reticulum, membrane, transmembrane, phosphoprotein; HET: S99; 1.84A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 2wap_A* 1mt5_A* 2vya_A* Probab=100.00 E-value=0 Score=794.65 Aligned_cols=461 Identities=20% Similarity=0.281 Sum_probs=371.0 Q ss_pred CCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHC Q ss_conf 41345099999999968987899999999999996885558999888999999999999997888988661212232000 Q gi|254780978|r 3 ELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGDARDLEGIPIGIKDCF 82 (493) Q Consensus 3 ~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~pL~GiPi~vKD~~ 82 (493) .|..||+.||+++|++|++||+||+++|++||+++|+.+|||+++++|.+++.|+ ..+.+|||||||+|||+| T Consensus 67 ~i~~ls~~el~~~l~~g~ls~~ev~~~~l~ri~~~~~~lna~~~~~~d~~~~~a~-------~~~~gpL~GvPi~vKD~~ 139 (573) T 2wj1_A 67 ALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQ-------APRQGLLYGVPVSLKECF 139 (573) T ss_dssp HHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECSTHHHHHHH-------CCTTCTTTTCEEEEETTS T ss_pred HHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHC-------CCCCCCCCCCEEEEEECC T ss_conf 8987819999999976998799999999999999788668899939789999975-------999899888878604064 Q ss_pred CCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 04878553303765157544432104688874000011100000135665322223433566767656655445554445 Q gi|254780978|r 83 ATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGG 162 (493) Q Consensus 83 ~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGSs~G 162 (493) +++|++||+|+..++++++++||++|++|+++|||++||||||||+++.+|+|++||+|+||||+. ++||||||| T Consensus 140 ~~~G~~tt~Gs~~~~~~~~~~da~vV~~L~~aGaii~gkTn~~e~~~~~~~~n~~~G~t~NP~~~~-----~~~GGSSgG 214 (573) T 2wj1_A 140 SYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSS-----KSPGGSSGG 214 (573) T ss_dssp CCTTCCCCTTCGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTT-----BCCCSSSHH T ss_pred CCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCC T ss_conf 768984377696357999996699999999779907997068741237787788989989962203-----578899864 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 421001233432243211211113055411101154541000112332222----1212354432202344665302246 Q gi|254780978|r 163 SSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAP----SLDQAGIITRTVRDSAILLKAIAGY 238 (493) Q Consensus 163 ~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~----~ld~~Gpmarsv~D~~~~l~vl~g~ 238 (493) ||++||+|++|+++|||||||||+||+||||||||||+||||+.|+.|..+ .+|++|||||||+|+++++++|++. T Consensus 215 saaavAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~vs~~G~~p~~~~~~~~~d~~GpmaRsv~Dlal~l~vl~g~ 294 (573) T 2wj1_A 215 EGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCE 294 (573) T ss_dssp HHHHHHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTCCCSSCSCCSSCCEEEEEESSHHHHHHHHHHHSSH T ss_pred CHHHHHCCCCCEECCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 08777437875211368999845672036845771578877788978743345655320046416288999999997278 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-H Q ss_conf 743101111246531012444322222234344443332014565566566543322110135688721455554444-4 Q gi|254780978|r 239 DECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYI-I 317 (493) Q Consensus 239 d~~D~~~~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~-~ 317 (493) |+.|......+.+ +...+..+.+++|||++.++++..+++++.++++++++.|+++|++|+|+++|.+.+....... . T Consensus 295 d~~d~~~~~~~~p-~~~~~~~~~k~lRIg~~~~~~~~~~~p~v~~a~~~a~~~Le~~Ga~Vvev~~~~~~~~~~~~~~~~ 373 (573) T 2wj1_A 295 HLFTLDPTVPPLP-FREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGG 373 (573) T ss_dssp HHHHHCTTSCCCC-CCHHHHTCCCCCEEEECSCCSSSCCCHHHHHHHHHHHHHHHHTTCEEEECCCSCHHHHHHTHHHHH T ss_pred CCCCCCCCCCCCC-HHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH T ss_conf 9544545578875-043303565451699970345566898999999999999997898899957866599999999999 Q ss_pred HHHHHHHHHHH-HHHHHCCCCCCCCCHHHHH------HHHH---HHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 56789888776-5333103100243102455------4321---000014666665302333332000122334578999 Q gi|254780978|r 318 SPAEASSNLAR-YDGVRYGLRVEGKDILEMY------ENTR---SIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRT 387 (493) Q Consensus 318 ~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~ 387 (493) ...+....+.. +..... .....+..... .... ...+.+.+...+ .........+|.++...+. T Consensus 374 ~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 446 (573) T 2wj1_A 374 LFSDGGRSFLQNFKGDFV--DPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFL-----NNMRPRSAEKLWKLQHEIE 446 (573) T ss_dssp HTTBTTHHHHHTTTTSCC--CGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHH-----HHTSBCBHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCCCCHHHHHHHHHHHH T ss_conf 999899999876403443--303899999862136789999987522337899999-----8503012999999999999 Q ss_pred HHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEE-------------- Q ss_conf 99999999986-399899917998999877633467325788764378999998789837684035-------------- Q gi|254780978|r 388 LIKRDFTEAFE-QGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAAL-------------- 452 (493) Q Consensus 388 ~~~~~~~~~~~-~~~D~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~-------------- 452 (493) .+++.+.+.|. .++|+||+||.+ ++++++..... .....||.+||++|+|+++||+|+ T Consensus 447 ~~r~~~~~~~~~~~~D~LLtPt~~-pa~~~~~~~~~------~~~~~~T~~~NllG~PaisvP~g~v~~~~~~~~~~~~~ 519 (573) T 2wj1_A 447 MYRQSVIAQWKAMNLDVLLTPMLG-PALDLNTPGRA------TGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKG 519 (573) T ss_dssp HHHHHHHHHHHHTTCSEEEEECCC-SCCBTTCGGGC------GGGGHHHHHHHHTTCCEEEEEEEECCHHHHHGGGGCCC T ss_pred HHHHHHHHHHHHCCCCEEEECCCC-CCCCCCCHHHH------HCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC T ss_conf 999999999876598789838988-76666872554------24620679999858995999657666543221011233 Q ss_pred ---------------CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf ---------------59998379999518998799999999999992577978 Q gi|254780978|r 453 ---------------CEKKMPLGLQLIGQPFREETLFSVGQIIEKEAGYFRPH 490 (493) Q Consensus 453 ---------------~~~GLPvGiQiig~~~~D~~lL~~a~~~E~~~~~~~pp 490 (493) +.+|||+||||||++|+|++||++|++||++++.+|+| T Consensus 520 ~~~~~~~~~~~~~~~~~~GLPvGvQlig~~~~D~~lL~~A~~lE~~l~~~~~P 572 (573) T 2wj1_A 520 YFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQKQP 572 (573) T ss_dssp SSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTTC-- T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 33311121123456789999876777899999899999999999973799998 No 6 >1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Probab=100.00 E-value=0 Score=783.58 Aligned_cols=468 Identities=29% Similarity=0.395 Sum_probs=378.2 Q ss_pred CCCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC---CCCCEEEEECHHHHHHHHHHHHHHHHCCCC-CCCCCCEEH Q ss_conf 8413450999999999689878999999999999968---855589998889999999999999978889-886612122 Q gi|254780978|r 2 SELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSN---SQMNAYIEVVAQKARAAAEESDKRIINGDA-RDLEGIPIG 77 (493) Q Consensus 2 ~~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~---~~~na~~~~~~~~al~~A~~~d~~~~~~~~-~pL~GiPi~ 77 (493) .|+.++||.||+++||+|++||+||+++|++||+++| +.+|||+++++| |+++|+++|+++++|++ +|||||||+ T Consensus 6 ~~~~~~~~~~l~~~~~~g~~s~~~v~~~~~~ri~~~~~~~~~lna~~~~~~~-a~~~A~~~d~~~~~g~~~gpL~GvP~~ 84 (503) T 1m22_A 6 FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLL 84 (503) T ss_dssp CTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEE T ss_pred CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHH-HHHHHHHHHHHHHCCCCCCCCCCCEEE T ss_conf 8751176999999998599979999999999999960638827899980999-999999999999779988984888788 Q ss_pred HHHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCC Q ss_conf 32000048785533037651575444321046888740000111000001356653-----2222343356676765665 Q gi|254780978|r 78 IKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSN-----ETSYYGPVISPWRSMDSTD 152 (493) Q Consensus 78 vKD~~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~-----~n~~~G~t~NP~~~~~~~~ 152 (493) |||+|+|+|++||+|+..+++.. ++||++|++|+++|||++||||||||+++.+| .|++||+|+||||+. T Consensus 85 vKD~~~v~G~~tt~Gs~~~~~~~-~~da~~v~~L~~aGai~~gkt~~~e~~~~~~t~~~~~~n~~~g~~~nP~~~~---- 159 (503) T 1m22_A 85 LKDNINAAPMATSAGSLALQGFR-PDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS---- 159 (503) T ss_dssp EETTBCCTTSCCCTTCGGGTTCC-CCCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTT---- T ss_pred EECCCCCCCCCCCCCCHHHCCCC-CCCHHHHHHHHHCCCEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC---- T ss_conf 87353668970275387565899-8776999999976985762447605532256566677787999978988888---- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 54455544454210012334322432112111130554111011545410001123322221212354432202344665 Q gi|254780978|r 153 KFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILL 232 (493) Q Consensus 153 ~~~~GGSs~G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l 232 (493) ++|||||||+|++||+|++++|+|||||||||+||+||||||||||+||||+.|+.|.++++||+|||||+|+|+++++ T Consensus 160 -~~~GGSSgGsaaava~g~~~~aiGsDtgGSiRiPAa~cGl~G~KPT~G~i~~~G~~p~~~~~dtvGp~arsv~D~~l~~ 238 (503) T 1m22_A 160 -HSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVL 238 (503) T ss_dssp -BCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHH T ss_pred -CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf -6788788742888861587601355567841475785186587146687667797776787772179668730365543 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 30224674310111124653101----24443222222343444433320145655665665433221101356887214 Q gi|254780978|r 233 KAIAGYDECDATCVNLPVPDYER----ALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQ 308 (493) Q Consensus 233 ~vl~g~d~~D~~~~~~~~~~~~~----~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~ 308 (493) ++|.++|+.|+.+.+.+...... ......+++++++..... ..++.+.+.++++++.|+++|++|+|+++|... T Consensus 239 ~v~~g~d~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~g~~v~ev~lp~~~ 316 (503) T 1m22_A 239 TAIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPL--LKYRGMPPLIEQAATELRRAGAVVVPVELPNQG 316 (503) T ss_dssp HHHCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGG--GGSTTHHHHHHHHHHHHHHTTCEEEEECCTTTT T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCCC--CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH T ss_conf 321278878865556666663024441165443221553142113--442046778888999999748857996078647 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH---HHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 5555444445678988877653331031002431024554---3210000146666653023333320001223345789 Q gi|254780978|r 309 YALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYE---NTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKI 385 (493) Q Consensus 309 ~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~ 385 (493) .....++.+...|+..++..|............++..... ......+++++..+... .....+..+.++... T Consensus 317 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~ 391 (503) T 1m22_A 317 AWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADA-----TAGLADPAYIRARSD 391 (503) T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHT-----CCCTTCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHH T ss_conf 689999999999999999999875134320068888887641001233321356778887-----531245789999999 Q ss_pred HHHH--HHHHHHHH-HCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEE Q ss_conf 9999--99999998-63998999179989998776334673257887643789999987898376840355999837999 Q gi|254780978|r 386 RTLI--KRDFTEAF-EQGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQ 462 (493) Q Consensus 386 r~~~--~~~~~~~~-~~~~D~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQ 462 (493) +++. ++.+...+ +++||+||+||++.+++...+.... ...+|.++|++|+|++|||+|+. +|||+||| T Consensus 392 ~~r~~~~~~~~~~~~~~~~DvLi~Pt~~~~~P~~~~~~~~--------~~~~t~~~Nl~G~PaisvP~G~~-dGLPvGlQ 462 (503) T 1m22_A 392 ARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDF--------PGESYSAAAVAGYPSLTVPMGQI-DGLPVGLL 462 (503) T ss_dssp HHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---CC--------TTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEE T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC--------HHHHHHHHHHHCCCEEEEECCCC-CCCCEEEE T ss_conf 9999999999999866688889838998667757556664--------09898999995999699968889-99756477 Q ss_pred EECCCCCHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 951899879999999999999257797888 Q gi|254780978|r 463 LIGQPFREETLFSVGQIIEKEAGYFRPHKW 492 (493) Q Consensus 463 iig~~~~D~~lL~~a~~~E~~~~~~~pp~~ 492 (493) |||++|+|++||++|++||++++|||||+| T Consensus 463 lig~~~~D~~LL~lA~~lE~~~~~~rpP~~ 492 (503) T 1m22_A 463 FMGTAWSEPKLIEMAYAYEQRTRARRPPHF 492 (503) T ss_dssp EECSTTCHHHHHHHHHHHHHHHCCCCCCCC T ss_pred EECCCCCHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 889999999999999999985197989899 No 7 >3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation, plasmid; 1.80A {Arthrobacter SP} PDB: 3a2p_A Probab=100.00 E-value=0 Score=768.13 Aligned_cols=460 Identities=25% Similarity=0.371 Sum_probs=376.8 Q ss_pred CCCC-HHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHH Q ss_conf 9841-345099999999968987899999999999996885558999888999999999999997888988661212232 Q gi|254780978|r 1 MSEL-NFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGDARDLEGIPIGIK 79 (493) Q Consensus 1 m~~~-~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~pL~GiPi~vK 79 (493) |++. .+++++||+++||+|++||+|||++||+||+++|+++|||+++++|+|+++|+++| +|||||||+|| T Consensus 1 m~~~~~~~~a~~~~~~i~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~A~~~a~~~~--------gpL~GiPi~vK 72 (493) T 3a2q_A 1 MSKVDLWQDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELAS--------GPFAGVPYLLK 72 (493) T ss_dssp ---CCTTSCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHCC--------STTTTCEEEEE T ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCC--------CCCCCCEEEEE T ss_conf 9852278889999999976997599999999999998697669899879899999827778--------98688988880 Q ss_pred HHCCC-CCCCCCCCHHHHH--CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 00004-8785533037651--57544432104688874000011100000135665322223433566767656655445 Q gi|254780978|r 80 DCFAT-KGIHTQACSHILD--GFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTP 156 (493) Q Consensus 80 D~~~v-~g~~tt~G~~~~~--~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~ 156 (493) |+|++ +|++||+|+..++ ++++++||++|++||++||||+||||||||+++.+|.|++||+|+||||+. ++| T Consensus 73 D~~~~~~~~~tt~g~~~~~~~~~~~~~da~~V~~L~~aGAii~gktn~~e~~~~~~~~~~~~g~t~NP~~~~-----~~~ 147 (493) T 3a2q_A 73 DLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLG-----RSV 147 (493) T ss_dssp SSSSCCTTSBCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTT-----BCC T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCC T ss_conf 671436998888605778746999998609999987479479852677643333554555677868940036-----789 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHH Q ss_conf 55444542100123343224321121111305541110115454100011233222212123---544322023446653 Q gi|254780978|r 157 GGSSGGSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQA---GIITRTVRDSAILLK 233 (493) Q Consensus 157 GGSs~G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~---Gpmarsv~D~~~~l~ 233 (493) ||||||||++||+|++++++|||||||||+||+||||||||||+||||+.|++|.++++|++ |||||||+|++++++ T Consensus 148 GGSSgGsaaava~g~~~~aiGtDtgGSiR~PAa~cGv~GlKPT~G~is~~G~~p~s~~~d~~~~~Gpmarsv~D~a~~~~ 227 (493) T 3a2q_A 148 GGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLD 227 (493) T ss_dssp CSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHH T ss_pred CCCCCCCHHHHHCCCCCEEECCCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 88888745466448976442367887330486764821220677754445446677765433456875684999987533 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-- Q ss_conf 02246743101111246531012444322222234344443--33201456556656654332211013568872145-- Q gi|254780978|r 234 AIAGYDECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRL--DYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQY-- 309 (493) Q Consensus 234 vl~g~d~~D~~~~~~~~~~~~~~~~~~~k~lrIgi~~~~~~--~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~-- 309 (493) +|+|+|+.|+.+...+..++...+....+++++++...... ..+++++.+.++.+++.|+++|++|+++.++.... T Consensus 228 v~~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~l~~~g~~v~~~~~~~~~~~~ 307 (493) T 3a2q_A 228 VVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVNDAYPEALGDRS 307 (493) T ss_dssp HHBSCCTTCSCCCCCCSSCHHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCCGGGGCCT T ss_pred HHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHH T ss_conf 00278876555566778653443045866553788604753334535589999999999898539779983443100022 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 55544444567898887765333103100243102455432100001466666530233333200012233457899999 Q gi|254780978|r 310 ALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLI 389 (493) Q Consensus 310 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~ 389 (493) ....+..+...+....+..+.. .+....... .........+..+ ......+|..+.+.++.. T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 369 (493) T 3a2q_A 308 FLKDYSTICDVAIAREIERNGE-LIGRPLTED------------DVEWTSWEMVKRA-----DQVTGRAFAACVDELRYY 369 (493) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTSCCCTT------------TSCHHHHHHHHHH-----HTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHC------------CCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH T ss_conf 3356766545899999987678-751002210------------1006789999977-----656678888877799999 Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC---------H-HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEE Q ss_conf 9999999863998999179989998776334673---------2-57887643789999987898376840355999837 Q gi|254780978|r 390 KRDFTEAFEQGVDVILTPTTPTSAFPLGKEENNS---------G-SMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPL 459 (493) Q Consensus 390 ~~~~~~~~~~~~D~lI~Pt~~~~a~~~~~~~~~~---------~-~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPv 459 (493) .+.+...++++||+||+|+++.++|++++..... . .........||.++|++|+|++|||+|++.+|||+ T Consensus 370 ~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~~~~GlPv 449 (493) T 3a2q_A 370 AGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPI 449 (493) T ss_dssp HHHHHHHHHTTCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEEEECTTSCEE T ss_pred HHHHHHHHHHCCCEEECCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCE T ss_conf 99999987507557852445555876641001567654540444430066644468999986997389976739899866 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCC-CCCC Q ss_conf 9999518998799999999999992577-9788 Q gi|254780978|r 460 GLQLIGQPFREETLFSVGQIIEKEAGYF-RPHK 491 (493) Q Consensus 460 GiQiig~~~~D~~lL~~a~~~E~~~~~~-~pp~ 491 (493) ||||+|++|+|++||++|++||++++|+ |.|+ T Consensus 450 GlQlvg~~~~D~~LL~iA~~lE~~~~~~~r~P~ 482 (493) T 3a2q_A 450 GVQIVAAYGREDLLLQVAAQLEGALPWVARRPQ 482 (493) T ss_dssp EEEEEESTTCHHHHHHHHHHHHHHSCCTTCCCG T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 278889999999999999999952895667998 No 8 >2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Probab=100.00 E-value=0 Score=746.56 Aligned_cols=430 Identities=30% Similarity=0.439 Sum_probs=363.1 Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCC-CCCCCCCEEHHHHHCCCC Q ss_conf 5099999999968987899999999999996885558999888999999999999997888-988661212232000048 Q gi|254780978|r 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGD-ARDLEGIPIGIKDCFATK 85 (493) Q Consensus 7 ~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~-~~pL~GiPi~vKD~~~v~ 85 (493) |++.||+++|++|++||+||+++|++||+++|+ +|||+++++|+|+++|+++|+++++|+ .+|||||||+|||+|+|| T Consensus 1 ~d~~e~~~~~~~g~~t~~~~~~~~l~ri~~~~~-~na~~~~~~~~a~~~A~~~d~~~~~g~~~gpL~GiPi~vKD~~~~~ 79 (434) T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVK 79 (434) T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBT T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC T ss_conf 988999999986999899999999999986099-8889996999999999999999977999898678879988360568 Q ss_pred CCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 78553303765157544432104688874000011100000135665322223433566767656655445554445421 Q gi|254780978|r 86 GIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSA 165 (493) Q Consensus 86 g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGSs~G~a~ 165 (493) |++||+|+.++++. +.+||++|++|+++|||++||||||||+++..+.|++||+|+||||+. ++|||||||+|+ T Consensus 80 g~~tt~Gs~~~~~~-~~~da~~V~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~np~~~~-----~~~gGSSgGsaa 153 (434) T 2dc0_A 80 GMPTRAGTKAPLPP-LPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPS-----RQAGGSSGGSAV 153 (434) T ss_dssp TBCCCTTCSSCCCC-CCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTT-----BBCCSSSHHHHH T ss_pred CCEECCCCCHHCCC-CCCCCHHHHHHHHCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCHHHH T ss_conf 94516837400157-997419999999789898476477132157666688989877976665-----557999856899 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC Q ss_conf 00123343224321121111305541110115454100011233222212123544322023446653022467431011 Q gi|254780978|r 166 AVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATC 245 (493) Q Consensus 166 ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~d~~D~~~ 245 (493) +||+|++++++|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.+.+..|+.. T Consensus 154 ava~g~~~~aiGtDtgGSiR~PAa~cGl~G~KPT~G~is~~G~~~~~~~~d~~Gpmarsv~D~a~~~~v~~g~~~~~~~~ 233 (434) T 2dc0_A 154 AVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGESIPLEGV 233 (434) T ss_dssp HHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTSCCCCCCC T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCHHHC T ss_conf 86458863357889887521270640987663589989899977767887836622076888999999972998201111 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 11246531012444322222234344443332014565566566543322110135688721455554444456789888 Q gi|254780978|r 246 VNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISPAEASSN 325 (493) Q Consensus 246 ~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~~~~~e~~~~ 325 (493) . +.++++...+.....++++..+++++.+.++..|+++++++++.... ...+..+...+.... T Consensus 234 ~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 296 (434) T 2dc0_A 234 Q----------------NPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLPLEGV-YEVYTRLVRYEAARI 296 (434) T ss_dssp C----------------SCEEEECHHHHTTCSCHHHHHHHHHHHHHTTTTTCEEEECCCCCTTH-HHHHHHHHHHHHHHH T ss_pred C----------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHH-HHHHHHHHHHHHHCC T ss_conf 3----------------66545431112454219999999999999875276302314733678-999999988753111 Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 77653331031002431024554321000014666665302333332000122334578999999999999863998999 Q gi|254780978|r 326 LARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVIL 405 (493) Q Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~lI 405 (493) .. .+.......+.++++.++..+.. ....+|.++...|+.+++.+.++|. +||+|| T Consensus 297 ~~------------------~~~~~~~~~~~~~~~~~~~~g~~-----~s~~~~~~a~~~r~~~~~~~~~~f~-~~D~ll 352 (434) T 2dc0_A 297 HE------------------KALKEHPEGFSPQVREALLAGLA-----LTEKDYRDAVAEREALRLELVKALR-GVDALL 352 (434) T ss_dssp SH------------------HHHHHCGGGSCHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHHHHHHT-TSSEEE T ss_pred CC------------------CHHHCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHHHHHHHHCCC-CCCEEE T ss_conf 11------------------01220755412578888751442-----1004567777777776666653145-778899 Q ss_pred ECCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHH Q ss_conf 17998999877633467325---788764378999998789837684035599983799995189987999999999999 Q gi|254780978|r 406 TPTTPTSAFPLGKEENNSGS---MGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEK 482 (493) Q Consensus 406 ~Pt~~~~a~~~~~~~~~~~~---~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~~~E~ 482 (493) +||++.+|++++........ ........||.++|++|+|++|||+|+. +|||+||||||++|+|++||++|++||+ T Consensus 353 ~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlQlig~~~~D~~LL~iA~~lE~ 431 (434) T 2dc0_A 353 LPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAKV-EGMPVGLQVVGAYGEDGKVLALGGWLEA 431 (434) T ss_dssp EESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEEE-TTEEEEEEEECCTTCHHHHHHHHHHHHT T ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCCEEEEEECCCCCHHHHHHHHHHHHH T ss_conf 578787887767554454322102578899987999997899399837789-9975758888999999999999999998 Q ss_pred HHC Q ss_conf 925 Q gi|254780978|r 483 EAG 485 (493) Q Consensus 483 ~~~ 485 (493) ++| T Consensus 432 ~lG 434 (434) T 2dc0_A 432 RLG 434 (434) T ss_dssp TCC T ss_pred HHC T ss_conf 569 No 9 >3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Probab=100.00 E-value=0 Score=742.51 Aligned_cols=472 Identities=28% Similarity=0.430 Sum_probs=374.2 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCC-CCCCCCCEEHHHHHCCCCCC Q ss_conf 99999999968987899999999999996885558999888999999999999997888-98866121223200004878 Q gi|254780978|r 9 VSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGD-ARDLEGIPIGIKDCFATKGI 87 (493) Q Consensus 9 ~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~-~~pL~GiPi~vKD~~~v~g~ 87 (493) +.+....+.++.++++|+++++..++.......+.......++....|...+. ...++ .||||||||+|||+|+|+|+ T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~GpL~GiPi~vKD~~~~~G~ 104 (521) T 3a1k_A 26 ARLEWPALIDGALGSYDVVDQLYADEATPPTTSREHAVPSASENPLSAWYVTT-SIPPTSDGVLTGRRVAIKDNVTVAGV 104 (521) T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCCEECCCTTTCTTSCEEEEE-EECCSSCCTTTTCEEEEETTBCCTTS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHH-CCCCCCCCCCCCCEEEEECCCCCCCC T ss_conf 89999999986678999999854422255566502105775448123167774-39999999848785322505276897 Q ss_pred CCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 55330376515754443210468887400001110000013566532222343356676765665544555444542100 Q gi|254780978|r 88 HTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAV 167 (493) Q Consensus 88 ~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGSs~G~a~av 167 (493) +||+|+.+++++++++||++|++|+++||||+||||||||+++.+++|++||+|+||||+. ++|||||||||++| T Consensus 105 ~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~Gktn~~e~~~~~~~~~~~~G~t~NP~~~~-----~~~GGSSgGsaaav 179 (521) T 3a1k_A 105 PMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQ-----REAGGSSGGSAALV 179 (521) T ss_dssp CBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEEE-----EECCSSSHHHHHHH T ss_pred CCCCCCHHHCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCC-----CCCCCCCHHHHHHH T ss_conf 8053587565899998759999999889999752347987258999999988878988889-----99998854899999 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 12334322432112111130554111011545410001123322221212354432202344665302246743101111 Q gi|254780978|r 168 AGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCVN 247 (493) Q Consensus 168 a~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~d~~D~~~~~ 247 (493) |+|++++++|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+|+|+.|+.+.. T Consensus 180 aag~~~~aiGtDtgGSIR~PAa~cGv~GlKPT~G~vs~~G~~p~~~~~d~~GpmaRsv~D~a~~l~~~~g~d~~Dp~~~~ 259 (521) T 3a1k_A 180 ANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQAD 259 (521) T ss_dssp HTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHHHHCSCCSSCTTSCT T ss_pred HCCCCCEECCCCCCCCCCCHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 86998543155656554452564484574057887667898777787478778658898999987632278778866455 Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 24-653101244432222223434444-3332014565566566543322110135688721455554444456789888 Q gi|254780978|r 248 LP-VPDYERALDQSIQGMTVGIPKEYR-LDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISPAEASSN 325 (493) Q Consensus 248 ~~-~~~~~~~~~~~~k~lrIgi~~~~~-~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~~~~~e~~~~ 325 (493) .+ ..++...+..+++++|||++.++. ....++++.++++.+++.|+++|+++++++.|........+..+...+.... T Consensus 260 ~~~~~~~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~~~a~~~~~~~l~~~G~~v~~~~~p~~~~~~~~~~~~~~~~~~~~ 339 (521) T 3a1k_A 260 SVEAGDYLSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVNIPWHLHAFHIWNVIATDGGAYQ 339 (521) T ss_dssp TCCCCCSSTTTTSCCTTCEEEEEGGGSCCSSSCHHHHHHHHHHHHGGGGGTCEEEEECCTHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH T ss_conf 67763134440367656779996233354446689999999999999984981587148506778999999998999998 Q ss_pred HHHHHHHHCCCCCCCCC---HHHHH---HHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 77653331031002431---02455---4321000014666665302333332000122334578999999999999863 Q gi|254780978|r 326 LARYDGVRYGLRVEGKD---ILEMY---ENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQ 399 (493) Q Consensus 326 l~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~ 399 (493) +. +...+........ ....+ .......+.+.++.++..+.+.. ......+|.++.+.|+.+++.+.++|.+ T Consensus 340 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~r~~~~~~~~~~~~~ 416 (521) T 3a1k_A 340 ML--DGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGI-TTLGGASYGKARNLVPLARAAYDTALRQ 416 (521) T ss_dssp TT--TTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HH--HCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 65--20011001000236377899988765416544289999998644331-0010677888999999999999999823 Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHH Q ss_conf 998999179989998776334673257--887643789999987898376840355999837999951899879999999 Q gi|254780978|r 400 GVDVILTPTTPTSAFPLGKEENNSGSM--GHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVG 477 (493) Q Consensus 400 ~~D~lI~Pt~~~~a~~~~~~~~~~~~~--~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a 477 (493) ||+||+||++.++++++......... .......||.++|++|+|++|||+|+. +|||+||||||++|+|++||++| T Consensus 417 -~D~Ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~~-~GlPvGlQlig~~~~D~~LL~iA 494 (521) T 3a1k_A 417 -FDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLV-NGLPVGMMITGRHFDDATVLRVG 494 (521) T ss_dssp -CSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHH T ss_pred -CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCCEEEEEECCCCCHHHHHHHH T ss_conf -9999978988876557754455667778887777661889986898699878877-99887577789999899999999 Q ss_pred HHHHHHHCCCCCCC Q ss_conf 99999925779788 Q gi|254780978|r 478 QIIEKEAGYFRPHK 491 (493) Q Consensus 478 ~~~E~~~~~~~pp~ 491 (493) ++||+++|+|++|. T Consensus 495 ~a~E~~~g~~~~P~ 508 (521) T 3a1k_A 495 RAFEKLRGAFPTPA 508 (521) T ss_dssp HHHHHHHCCCCCTT T ss_pred HHHHHHHCCCCCCC T ss_conf 99999749899998 No 10 >1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Probab=100.00 E-value=0 Score=709.36 Aligned_cols=409 Identities=25% Similarity=0.390 Sum_probs=347.0 Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCC-CCCCCCCEEHHHHHCCCC Q ss_conf 5099999999968987899999999999996885558999888999999999999997888-988661212232000048 Q gi|254780978|r 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGD-ARDLEGIPIGIKDCFATK 85 (493) Q Consensus 7 ~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~-~~pL~GiPi~vKD~~~v~ 85 (493) |||+||++++++|++||+||+++|++||+++|+.+||+++++.+ +.++ .+|||||||+|||+|+|| T Consensus 2 ls~~~l~~~~~~~~~s~~~~~~~~l~ri~~~~~~lna~~~~~~~-------------~~~~~~gpL~GiPi~vKD~~~~~ 68 (414) T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKS-------------ARAQASGPLRGIAVGIKDIIDTA 68 (414) T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-------------CCCCSSSTTTTCEEEEETTBCCS T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH-------------HHCCCCCCCCCCEEEEECCCCCC T ss_conf 67899999998699989999999999999869703980610398-------------61766798578889988470778 Q ss_pred CCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 78553303765157544432104688874000011100000135665322223433566767656655445554445421 Q gi|254780978|r 86 GIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSA 165 (493) Q Consensus 86 g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGSs~G~a~ 165 (493) |++||+|+..+.++++.+|+++|++|+++|||++||||||||+++. +|.+.||||+. +++||||||+|+ T Consensus 69 G~~tt~Gs~~~~~~~~~~da~~v~~L~~aGai~~gktn~~e~~~~~------~~~~~np~~~~-----~~~GGSSgGsaa 137 (414) T 1o9p_A 69 NMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFASRD------PTATLNPHNTG-----HSPGGASSGSAA 137 (414) T ss_dssp SSCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGSSC------CCSCCBTTBTT-----BCCCSSSHHHHH T ss_pred CCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHCCC------CCCCCCCCCCC-----CCCCCCCCHHHH T ss_conf 9740653876507997551299999996898899603326540588------98878988876-----778998758999 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC Q ss_conf 00123343224321121111305541110115454100011233222212123544322023446653022467431011 Q gi|254780978|r 166 AVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATC 245 (493) Q Consensus 166 ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~d~~D~~~ 245 (493) +||+|++++++|||||||||+||+||||||||||+||||+.|+.|.++++|++|||||+|+|+++++++|.++|+.|+.. T Consensus 138 ava~g~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~i~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~~l~g~~~~~~~~ 217 (414) T 1o9p_A 138 AVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIV 217 (414) T ss_dssp HHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCC T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC T ss_conf 99818874467477899875481641455444788988898875556543544431120889999998751898555568 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHHHH Q ss_conf 1124653101244432222223434444333201456556656654332211013568872145-555444445678988 Q gi|254780978|r 246 VNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQY-ALPAYYIISPAEASS 324 (493) Q Consensus 246 ~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~-~~~~~~~~~~~e~~~ 324 (493) +.++.+++++++.+...+++++.++++++++.|+++|+++++++++.... ....+..+...|... T Consensus 218 --------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~e~~~ 283 (414) T 1o9p_A 218 --------------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHR 283 (414) T ss_dssp --------------CCSSCEEEECCCGGGCCCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHHHHHHHHH T ss_pred --------------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH T ss_conf --------------753344554444223440278888899999999976982798327136666777755566899999 Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 87765333103100243102455432100001466666530233333200012233457899999999999986399899 Q gi|254780978|r 325 NLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVI 404 (493) Q Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~l 404 (493) .+..+ +.. ....+.+.++.++..+ ......+|.++++.|..++++|.++|+ +||+| T Consensus 284 ~l~~~-----------------~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~r~~~~~~~~~~~~-~~D~l 339 (414) T 1o9p_A 284 ALAWE-----------------FSE-HHDEIAPMLRASLDAT-----VGLTPKEYDEARRIGRRGRRELGEVFE-GVDVL 339 (414) T ss_dssp HTHHH-----------------HHH-SGGGSCHHHHHHHHHT-----TTCCHHHHHHHHHHHHHHHHHHHHHTT-TCSEE T ss_pred HHHHH-----------------HHH-HHCCCCHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCEE T ss_conf 98988-----------------654-0001331565543321-----001103578999999999999999983-79999 Q ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH Q ss_conf 91799899987763346732578876437899999878983768403559998379999518998799999999999992 Q gi|254780978|r 405 LTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEKEA 484 (493) Q Consensus 405 I~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~~~E~~~ 484 (493) |+||++.++|++...... ...||.+||++|+|+++||+|. .+|||+||||||++|+|++||++|++||+++ T Consensus 340 l~Pt~p~~ap~~~~~~~~--------~~~~t~~~Nl~G~PaisvP~g~-~~GlPvGlQivg~~~~D~~lL~~A~~lE~al 410 (414) T 1o9p_A 340 LTYSAPGTAPAKALASTG--------DPRYNRLWTLMGNPCVNVPVLK-VGGLPIGVQVIARFGNDAHALATAWFLEDAL 410 (414) T ss_dssp EEESSSSSCCBGGGCCCC--------CGGGTHHHHHHCCCEEEEEEEE-ETTEEEEEEEEESTTCHHHHHHHHHHHHHHH T ss_pred EECCCCCCCCCCCCCCCC--------CHHHHHHHHHHCCCEEEEECCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 968998766630004568--------7677599999789849983678-9996176888899998899999999999996 Q ss_pred CC Q ss_conf 57 Q gi|254780978|r 485 GY 486 (493) Q Consensus 485 ~~ 486 (493) +. T Consensus 411 ~~ 412 (414) T 1o9p_A 411 AK 412 (414) T ss_dssp HC T ss_pred HH T ss_conf 05 No 11 >3obf_A Putative transcriptional regulator, ICLR family; structural genomics, PSI-2, protein structure initiative; 2.16A {Arthrobacter aurescens} Probab=72.27 E-value=4.4 Score=18.70 Aligned_cols=48 Identities=8% Similarity=0.083 Sum_probs=35.4 Q ss_pred HCCCEEEEEEEECCCCCEEE-EEEECC--CCCH-------HHHHHHHHHHHHHHCCCCC Q ss_conf 78983768403559998379-999518--9987-------9999999999999257797 Q gi|254780978|r 441 AGLPAISVPAALCEKKMPLG-LQLIGQ--PFRE-------ETLFSVGQIIEKEAGYFRP 489 (493) Q Consensus 441 ~G~PaisiP~G~~~~GLPvG-iQiig~--~~~D-------~~lL~~a~~~E~~~~~~~p 489 (493) .|.-++++|+ ++.+|-+++ |.+.|+ ++.+ ..|.+.+..+.+.+|++.| T Consensus 119 ~gv~~iavPv-~~~~g~~~aalsv~~p~~r~~~~~~~~~~~~l~~~a~~is~~lG~~~P 176 (176) T 3obf_A 119 IEEVGVASPV-YDHRGNMVASVLIPAPKFRVSQDTLNSLGEACAAAAAKVTTRLGGRAP 176 (176) T ss_dssp TTEEEEEEEE-ECTTSCEEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHHHTTCCCC T ss_pred CCCEEEEEEE-ECCCCCEEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 8988999999-999998999999988858699999999999986689999999678998 No 12 >1tf1_A Negative regulator of allantoin and glyoxylate utilization operons; midwest center for structural genomics, GLCR, ligand binding domain; 1.80A {Escherichia coli} SCOP: d.110.2.2 Probab=59.76 E-value=7.6 Score=17.12 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=35.3 Q ss_pred HCCCEEEEEEEECCCCCEE-EEEEECCC--CCH-------HHHHHHHHHHHHHHCCCCCC Q ss_conf 7898376840355999837-99995189--987-------99999999999992577978 Q gi|254780978|r 441 AGLPAISVPAALCEKKMPL-GLQLIGQP--FRE-------ETLFSVGQIIEKEAGYFRPH 490 (493) Q Consensus 441 ~G~PaisiP~G~~~~GLPv-GiQiig~~--~~D-------~~lL~~a~~~E~~~~~~~pp 490 (493) .|.-++++|+ ++.+|-++ .|.+.+.. ..+ ..|.+.|..+++.+|++-.| T Consensus 140 ~g~~~iavPv-~~~~g~~vaalsv~~~~~r~~~~~~~~~~~~L~~~A~~Is~~LG~r~~p 198 (198) T 1tf1_A 140 VGLNCIASAI-YDDVGSVVAAISISGPSSRLTEDRFVSQGELVRDTARDISTALGLKAHP 198 (198) T ss_dssp TTEEEEEEEE-ECTTSCEEEEEEEEEETTTSCGGGHHHHHHHHHHHHHHHHHHHTCCC-- T ss_pred CCCEEEEEEE-ECCCCCEEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 5844778889-9979989999999778586999999999999999999999987779999 No 13 >2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis} Probab=52.53 E-value=10 Score=16.36 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=28.1 Q ss_pred CCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 22222-34344443332014565566566543322110135 Q gi|254780978|r 262 QGMTV-GIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVE 301 (493) Q Consensus 262 k~lrI-gi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vve 301 (493) .++|| |-..+ |...+|+....++..++.|++.|..+|+ T Consensus 104 ~PLrIvgEvt~--W~~hspe~lq~mr~~La~L~~~g~~~I~ 142 (143) T 2hw2_A 104 EPVWIVGELTD--WVGHPPEQLAAMRQGLEELRRKGLAVIY 142 (143) T ss_dssp SCEEEEEEECC--CCCCCHHHHHHHHHHHHHHHHTTCCCCC T ss_pred CCCEEEEEECC--CCCCCHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 87188888614--4569999999999999999873712014 No 14 >1ysp_A Transcriptional regulator KDGR; ICLR, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Escherichia coli} Probab=46.10 E-value=13 Score=15.71 Aligned_cols=49 Identities=24% Similarity=0.368 Sum_probs=35.9 Q ss_pred HCCCEEEEEEEECCCCCEEE-EEEECCCCC--H-------HHHHHHHHHHHHHHCCCCCC Q ss_conf 78983768403559998379-999518998--7-------99999999999992577978 Q gi|254780978|r 441 AGLPAISVPAALCEKKMPLG-LQLIGQPFR--E-------ETLFSVGQIIEKEAGYFRPH 490 (493) Q Consensus 441 ~G~PaisiP~G~~~~GLPvG-iQiig~~~~--D-------~~lL~~a~~~E~~~~~~~pp 490 (493) -|.-++++|+ ++.+|-+++ |.+++...+ + ..|.+.+..+++.+||+--| T Consensus 120 ~g~~~iA~PI-~~~~g~~~aalsv~~~~~~~~~~~~~~~~~~L~~~a~~Is~~LG~~~~p 178 (181) T 1ysp_A 120 EGLRCIAVPV-FDRFGVVIAGLSISFPTLRFSEERLQEYVAMLHTAARKISAQMGYHDYP 178 (181) T ss_dssp TTBEEEEEEE-ECTTSCEEEEEEECCBSSSCCHHHHHHHHHHHHHHHHHHHHHHTC---- T ss_pred CCCEEEEEEE-ECCCCCEEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 6735888888-7799988999999867476999999999999999999999984899999 No 15 >2o99_A Acetate operon repressor; ICLR, DNA binding protein; HET: MSE; 1.70A {Escherichia coli} SCOP: d.110.2.2 PDB: 2o9a_A 1td5_A Probab=43.65 E-value=14 Score=15.47 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=33.2 Q ss_pred HCCCEEEEEEEECCCCCEE-EEEEECCCC--CH-------HHHHHHHHHHHHHHCCCC Q ss_conf 7898376840355999837-999951899--87-------999999999999925779 Q gi|254780978|r 441 AGLPAISVPAALCEKKMPL-GLQLIGQPF--RE-------ETLFSVGQIIEKEAGYFR 488 (493) Q Consensus 441 ~G~PaisiP~G~~~~GLPv-GiQiig~~~--~D-------~~lL~~a~~~E~~~~~~~ 488 (493) .|.-++++|+ ++.+|-|+ .|.+.+... .+ ..|.+.|..+++.+|++| T Consensus 124 ~g~~~iA~Pv-~~~~g~~~~al~v~~~~~~~~~~~~~~~~~~L~~~a~~is~~lgg~r 180 (182) T 2o99_A 124 LGLRCLAACI-FDEHREPFAAISISGPISRITDDRVTEFGAMVIKAAKEVTLAYGGMR 180 (182) T ss_dssp TTEEEEEEEE-ECTTSCEEEEEEEEEETTTSCGGGHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCEEEEEE-ECCCCCEEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 7870689989-88999899999998774319989999999999999999999977677 No 16 >3d3o_A Putative transcriptional regulator, ICIR family; alpha-beta structure, effector domain, structural genomics, PSI-2; HET: MSE; 2.46A {Acinetobacter SP} Probab=36.85 E-value=10 Score=16.27 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=34.1 Q ss_pred CCCEEEEEEEECCCCCEEEEEEECCCCC-----H---HHHHHHHHHHHHHHCCCCC Q ss_conf 8983768403559998379999518998-----7---9999999999999257797 Q gi|254780978|r 442 GLPAISVPAALCEKKMPLGLQLIGQPFR-----E---ETLFSVGQIIEKEAGYFRP 489 (493) Q Consensus 442 G~PaisiP~G~~~~GLPvGiQiig~~~~-----D---~~lL~~a~~~E~~~~~~~p 489 (493) |.-++++|+.-...+.+.+|.+.|+..+ | ..|.+.+..+++..+|++| T Consensus 122 gv~~vAvpi~~~~g~~~~aisv~~p~~r~~~~~~~~~~~L~~aa~~i~~~~~~~~p 177 (178) T 3d3o_A 122 GGGTICVLLPMTIQGQPVTMGLGGALDRIKQNYDRYLELLLNGVQQLKKSDSFHQP 177 (178) T ss_dssp TEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHTTSCCBCC- T ss_pred CCEEEEEEEECCCCCEEEEEEEEEEHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 96899999872899879999997487872440999999999999999960188899 No 17 >1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A Probab=36.34 E-value=13 Score=15.55 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=24.2 Q ss_pred CCCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 841345099999999968987899999999999996 Q gi|254780978|r 2 SELNFMAVSESRDRLRSKDISAVELVDSYIQAIENS 37 (493) Q Consensus 2 ~~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~ 37 (493) .|+..|++.||.+.++.+-+...=.=...++|+..+ T Consensus 3 ~d~~~mtv~eLK~~lk~rgL~~sG~K~~Li~RL~~~ 38 (51) T 1h1j_S 3 ADYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKD 38 (51) T ss_dssp CSGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHH T ss_pred CCHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH T ss_conf 657778099999999987889887899999999997 No 18 >1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domains, HISD, L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A Probab=34.96 E-value=19 Score=14.60 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=21.2 Q ss_pred CHHCHHHHHHHHHHCCCCCH-H---HHHHHHHHHHHH Q ss_conf 13450999999999689878-9---999999999999 Q gi|254780978|r 4 LNFMAVSESRDRLRSKDISA-V---ELVDSYIQAIEN 36 (493) Q Consensus 4 ~~~~s~~~l~~~~~~~~~t~-~---~~~~~~~~~i~~ 36 (493) ...++..|..++++...++. . +.|+..++.+++ T Consensus 9 ~~~l~~~e~~~ll~R~~~~~~~~v~~~V~~Ii~~Vr~ 45 (434) T 1kae_A 9 WNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKA 45 (434) T ss_dssp GGGSCHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHHH T ss_pred HHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 7428999999982798877408899999999999997 No 19 >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 Probab=31.26 E-value=21 Score=14.21 Aligned_cols=45 Identities=29% Similarity=0.568 Sum_probs=32.2 Q ss_pred HCCCEEEEEEEECCCCCEE-EEEEECC--CCCHH-------HHHHHHHHHHHHHCC Q ss_conf 7898376840355999837-9999518--99879-------999999999999257 Q gi|254780978|r 441 AGLPAISVPAALCEKKMPL-GLQLIGQ--PFREE-------TLFSVGQIIEKEAGY 486 (493) Q Consensus 441 ~G~PaisiP~G~~~~GLPv-GiQiig~--~~~D~-------~lL~~a~~~E~~~~~ 486 (493) .|.-++++|+ ++.+|-|+ +|.+.+. +..++ .|.+.|..+++.+|| T Consensus 195 ~gv~~iAvPV-~~~~g~~~aalsv~~~~~~~~~~~~~~~~~~l~~aa~~Is~~LG~ 249 (249) T 1mkm_A 195 IGIMCVGVPI-FDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY 249 (249) T ss_dssp TTEEEEEEEE-ECTTSCEEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred CCCEEEEEEE-ECCCCCEEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 6957999998-889997999999876747589989999999999999999997097 No 20 >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei 1710B} PDB: 3glq_A* Probab=27.98 E-value=15 Score=15.23 Aligned_cols=36 Identities=17% Similarity=0.052 Sum_probs=24.8 Q ss_pred CCCCCCCCCEEHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCC Q ss_conf 889886612122320000487855330376515754443210468887400001 Q gi|254780978|r 66 GDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVML 119 (493) Q Consensus 66 ~~~~pL~GiPi~vKD~~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~ 119 (493) .+.+||.|+.|+.- -.+..++|.++.-|++.||-+. T Consensus 68 ~~ekPlkG~rI~~c------------------LHlt~kTAvLi~TL~a~GAeV~ 103 (494) T 3d64_A 68 KAQQPLKGARIAGS------------------LHMTIQTGVLIETLKALGADVR 103 (494) T ss_dssp TTTCTTTTCEEEEE------------------SCCSHHHHHHHHHHHHTTCEEE T ss_pred HCCCCCCCCEEEEE------------------EECHHHHHHHHHHHHHCCCEEE T ss_conf 25699899989999------------------7025889999999998599799 No 21 >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Probab=27.73 E-value=16 Score=14.99 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=24.1 Q ss_pred CCCCCCCCCEEHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCC Q ss_conf 889886612122320000487855330376515754443210468887400001 Q gi|254780978|r 66 GDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVML 119 (493) Q Consensus 66 ~~~~pL~GiPi~vKD~~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~ 119 (493) .+.+||.|+.|+.-= .+..++|.++..|++.||-+. T Consensus 38 ~~~kPl~G~rI~~cl------------------Hlt~kTAvLietL~a~GAeV~ 73 (464) T 3n58_A 38 GKSQPLKGARISGSL------------------HMTIQTAVLIETLKVLGAEVR 73 (464) T ss_dssp TTTCTTTTCEEEEES------------------CCSHHHHHHHHHHHHTTCEEE T ss_pred HCCCCCCCCEEEEEE------------------ECHHHHHHHHHHHHHCCCEEE T ss_conf 246998999899998------------------216999999999997698699 No 22 >1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Probab=27.01 E-value=25 Score=13.73 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=21.4 Q ss_pred CCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 41345099999999968987899999999999996 Q gi|254780978|r 3 ELNFMAVSESRDRLRSKDISAVELVDSYIQAIENS 37 (493) Q Consensus 3 ~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~ 37 (493) |+..|++.||.+.++.+-++..=.=...++|+..+ T Consensus 9 d~~~m~V~eLk~~L~~rgL~~~G~K~~Li~RL~~~ 43 (50) T 1zrj_A 9 DVRRLKVNELREELQRRGLDTRGLKAELAERLQAA 43 (50) T ss_dssp CGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHH T ss_pred CHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH T ss_conf 87888599999999987989887899999999998 No 23 >2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Probab=26.68 E-value=20 Score=14.43 Aligned_cols=33 Identities=12% Similarity=0.296 Sum_probs=17.3 Q ss_pred CCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 413450999999999689878999999999999 Q gi|254780978|r 3 ELNFMAVSESRDRLRSKDISAVELVDSYIQAIE 35 (493) Q Consensus 3 ~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~ 35 (493) |+..|++.||.+.++.+-+...=.=...++|+. T Consensus 9 dl~kmkV~eLK~~l~~rgL~~sG~K~~Li~RL~ 41 (55) T 2do1_A 9 ELHKLKLAELKQECLARGLETKGIKQDLIHRLQ 41 (55) T ss_dssp CTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHH T ss_pred CHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHH T ss_conf 888796999999999879898878999999999 No 24 >3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A* Probab=25.72 E-value=15 Score=15.28 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=3.7 Q ss_pred HHHHHHHHCC Q ss_conf 4332211013 Q gi|254780978|r 291 WLKDAGAKIV 300 (493) Q Consensus 291 ~L~~~G~~vv 300 (493) .++.+|+.+| T Consensus 212 ~~r~lGaDvV 221 (287) T 3odg_A 212 MMQIIGGDVV 221 (287) T ss_dssp HHHHTTCSEE T ss_pred HHHHCCCCEE T ss_conf 9998499887 No 25 >2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} Probab=24.66 E-value=28 Score=13.46 Aligned_cols=46 Identities=9% Similarity=0.146 Sum_probs=32.9 Q ss_pred HCCCEEEEEEEECCCCCEE-EEEEECC--CCCHH--------HHHHHHHHHHHHHCCC Q ss_conf 7898376840355999837-9999518--99879--------9999999999992577 Q gi|254780978|r 441 AGLPAISVPAALCEKKMPL-GLQLIGQ--PFREE--------TLFSVGQIIEKEAGYF 487 (493) Q Consensus 441 ~G~PaisiP~G~~~~GLPv-GiQiig~--~~~D~--------~lL~~a~~~E~~~~~~ 487 (493) -|.-++++|+ ++.+|-++ +|.+.++ ++.++ .|.+.|..+++.+||+ T Consensus 200 ~g~~~iAvPv-~~~~g~~~aalsv~~p~~r~~~~~~~~~~~~~l~~~a~~IS~~LG~~ 256 (257) T 2g7u_A 200 KGLISLAAPV-HDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSADMGFA 256 (257) T ss_dssp TTEEEEEEEE-ECTTSCEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHHHTTCC T ss_pred CCCEEEEEEE-ECCCCCEEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 7962999999-98999899999997673338988999999999997489999972899 No 26 >1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1 Probab=23.84 E-value=29 Score=13.36 Aligned_cols=38 Identities=8% Similarity=0.085 Sum_probs=25.7 Q ss_pred EHHHHHCCCCC--CCCCCCHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 22320000487--8553303765157544432104688874 Q gi|254780978|r 76 IGIKDCFATKG--IHTQACSHILDGFRPHYESTVTQKLWDN 114 (493) Q Consensus 76 i~vKD~~~v~g--~~tt~G~~~~~~~~~~~da~~V~~L~~a 114 (493) .++||-|.++. +|.|+|-...+ ......+++|+||.+. T Consensus 34 ~~l~~yi~l~~~~~pht~gr~~~~-~f~k~~~~IVERliN~ 73 (218) T 1iqv_A 34 PSLKPYINLEPRLLPHTHGRHAKK-HFGKANVHIVERLINK 73 (218) T ss_dssp TTTGGGSBCSCC-------------------CBHHHHHHHH T ss_pred CCHHHEEECCCEECCCCCCHHHHH-HCCCCCCCHHHHHHHH T ss_conf 564540534733414544505555-4153458699999988 No 27 >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 Probab=22.26 E-value=31 Score=13.16 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=9.3 Q ss_pred EECCCCCHHHHHHHHHHHHH Q ss_conf 95189987999999999999 Q gi|254780978|r 463 LIGQPFREETLFSVGQIIEK 482 (493) Q Consensus 463 iig~~~~D~~lL~~a~~~E~ 482 (493) |++.=++|..++..-.++++ T Consensus 540 LvadGfEe~E~~~~~~~L~~ 559 (715) T 1sy7_A 540 IIADGYDNVAYDAAYAAISA 559 (715) T ss_dssp ECCTTBCHHHHHHHHHHHHH T ss_pred EECCCCCHHHHHHHHHHHHH T ss_conf 81687348999999999997 No 28 >3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} Probab=21.91 E-value=16 Score=14.95 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=5.1 Q ss_pred HHCCCCCCCCC Q ss_conf 74000011100 Q gi|254780978|r 113 DNGAVMLGKLN 123 (493) Q Consensus 113 ~aGAi~~gkt~ 123 (493) ..|-+++|+-+ T Consensus 61 hsg~l~~G~~~ 71 (285) T 3khs_A 61 HAGSLIFGSVN 71 (285) T ss_dssp -CCEEEEEEET T ss_pred CCCCEEEEEEC T ss_conf 87717887448 No 29 >1ysq_A HTH-type transcriptional regulator YIAJ; YAIJ, ICLR, structural genomics, PSI, protein structure initiative; 1.75A {Escherichia coli} Probab=21.80 E-value=31 Score=13.10 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=34.0 Q ss_pred HCCCEEEEEEEECCCCCEEEEEEECCCCC---------HHHHHHHHHHHHHHHCCCC Q ss_conf 78983768403559998379999518998---------7999999999999925779 Q gi|254780978|r 441 AGLPAISVPAALCEKKMPLGLQLIGQPFR---------EETLFSVGQIIEKEAGYFR 488 (493) Q Consensus 441 ~G~PaisiP~G~~~~GLPvGiQiig~~~~---------D~~lL~~a~~~E~~~~~~~ 488 (493) .|.-++++|+--.+.....+|.+.+...+ -..|.+.+..+++.+||+- T Consensus 128 ~g~~~iAvPi~~~~g~~~~aisi~~~~~~~~~~~~~~~~~~L~~~a~~Is~~LG~~~ 184 (193) T 1ysq_A 128 LGVSCIAVPVFDIHGRVPYAVSISLSTSRLKQVGEKNLLKPLRETAQAISNELGFTV 184 (193) T ss_dssp TTEEEEEEEECCTTSCCSEEEEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC- T ss_pred CCCEEEEEEEECCCCCEEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 682589999988999999999998885868987999999999999999999868997 No 30 >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Probab=21.59 E-value=30 Score=13.23 Aligned_cols=60 Identities=13% Similarity=0.339 Sum_probs=38.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHCCC------CCEEEEECHHHHHHHHHHHHHHHHCCC----CCCCCCCEEHHHH Q ss_conf 68987899999999999996885------558999888999999999999997888----9886612122320 Q gi|254780978|r 18 SKDISAVELVDSYIQAIENSNSQ------MNAYIEVVAQKARAAAEESDKRIINGD----ARDLEGIPIGIKD 80 (493) Q Consensus 18 ~~~~t~~~~~~~~~~~i~~~~~~------~na~~~~~~~~al~~A~~~d~~~~~~~----~~pL~GiPi~vKD 80 (493) .+++|| +.+.|++ |++.++. +.-|-+++++.|...|+.++-.+.... .-|+.|+|+.-=| T Consensus 10 ~~~lTP--~~~Qy~~-iK~~~~d~ill~~~G~FYE~f~~DA~~~~~~l~i~~t~r~~~~~~~pmaG~P~~~~~ 79 (765) T 1ewq_A 10 PGPLPP--LLQQYVE-LRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFE 79 (765) T ss_dssp CSCCCH--HHHHHHH-HHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEEECSSCEEEEEEEEGGGHH T ss_pred CCCCCH--HHHHHHH-HHHHCCCEEEEEECCCEEEECHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCHHHHH T ss_conf 999998--9999999-998789989999878468884888999998519799768989998872688289999 Done!