HHSEARCH alignment of GI: 254780978 and SCOP domain: d1m22a_

Alignment
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]}
Probab=100.00  E-value=0  Score=789.94  Aligned_cols=467  Identities=29%  Similarity=0.396  Sum_probs=378.0

Q ss_pred             CCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC---CCCCEEEEECHHHHHHHHHHHHHHHHCCCC-CCCCCCEEHH
Q ss_conf             413450999999999689878999999999999968---855589998889999999999999978889-8866121223
Q gi|254780978|r    3 ELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSN---SQMNAYIEVVAQKARAAAEESDKRIINGDA-RDLEGIPIGI   78 (493)
Q Consensus         3 ~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~---~~~na~~~~~~~~al~~A~~~d~~~~~~~~-~pL~GiPi~v   78 (493)
                      ++..+||.||+++|++|++|++||+++|++||+++|   +.+|||+++++| |+++|+++|+++++|+. +|||||||+|
T Consensus         3 ~~~~~~~~~l~~~~~~g~~s~~~~~~~~~~ri~~~~~~~~~lna~~~~~~~-a~~~A~~~d~~~~~g~~~gpL~GvP~~v   81 (490)
T d1m22a_           3 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLL   81 (490)
T ss_dssp             TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEE
T ss_pred             CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHH-HHHHHHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf             840075999999998599979999999999999960738837999983999-9999999999997799899838787998


Q ss_pred             HHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCC
Q ss_conf             2000048785533037651575444321046888740000111000001356653-----22223433566767656655
Q gi|254780978|r   79 KDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSN-----ETSYYGPVISPWRSMDSTDK  153 (493)
Q Consensus        79 KD~~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~-----~n~~~G~t~NP~~~~~~~~~  153 (493)
                      ||+|+|+|++||+|+..++++. ++||++|++|+++|||++||||||||+++.+|     .|++||+|+||||+.     
T Consensus        82 KD~~~v~g~~tt~Gs~~~~~~~-~~da~~v~~L~~~Gai~~gkTn~~e~~~~~~t~~~~~~n~~~G~t~NP~~~~-----  155 (490)
T d1m22a_          82 KDNINAAPMATSAGSLALQGFR-PDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS-----  155 (490)
T ss_dssp             ETTBCCTTSCCCTTCGGGTTCC-CCCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTT-----
T ss_pred             ECCCCCCCCCCCCCCHHHCCCC-CCCCHHHHHHHCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC-----
T ss_conf             7434667974677465542668-7662666642034310100456606653233334443456789866865455-----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             44555444542100123343224321121111305541110115454100011233222212123544322023446653
Q gi|254780978|r  154 FTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLK  233 (493)
Q Consensus       154 ~~~GGSs~G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~  233 (493)
                      ++||||||||||+||+|++|+|+|||||||||+||+||||||||||+||||+.|+++.++++|++|||+|+|+|++++++
T Consensus       156 ~~~GGSSgGsaaavA~g~~~~aiGsD~gGSiR~PAa~cGl~G~KPT~G~is~~G~~~~~~~~d~~Gp~ar~v~D~~~~~~  235 (490)
T d1m22a_         156 HSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT  235 (490)
T ss_dssp             BCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             57788743177777776300354533347764320114515885124765567864445764677886465225543223


Q ss_pred             HCCCCCCCCCCCCCCCCCCCC---C-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf             022467431011112465310---1-244432222223434444333201456556656654332211013568872145
Q gi|254780978|r  234 AIAGYDECDATCVNLPVPDYE---R-ALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQY  309 (493)
Q Consensus       234 vl~g~d~~D~~~~~~~~~~~~---~-~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~  309 (493)
                      +|.+.|+.|+.....+.+...   . ......+++++++..+..  ..++.+.+.++++++.|+++|++|+|+++|.+..
T Consensus       236 vl~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~a~~~l~~~g~~v~ev~~p~~~~  313 (490)
T d1m22a_         236 AIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPL--LKYRGMPPLIEQAATELRRAGAVVVPVELPNQGA  313 (490)
T ss_dssp             HHCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGG--GGSTTHHHHHHHHHHHHHHTTCEEEEECCTTTTT
T ss_pred             HHHCCCCCCCCCCHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf             33014566753100012233104431265444453211342234--5551112565444788763023211024773477


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH---HHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             555444445678988877653331031002431024554---32100001466666530233333200012233457899
Q gi|254780978|r  310 ALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYE---NTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIR  386 (493)
Q Consensus       310 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r  386 (493)
                      ....++.+...|+..++..|............++.....   ......+++++..+..     .........+.++.+.+
T Consensus       314 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  388 (490)
T d1m22a_         314 WAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEAD-----ATAGLADPAYIRARSDA  388 (490)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHH-----TCCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH-----HHHCCCHHHHHHHHHHH
T ss_conf             7889999999999863466765313431007888888775421013320124567888-----75302204678899999


Q ss_pred             HHH-HH-HHHHHH-HCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEE
Q ss_conf             999-99-999998-639989991799899987763346732578876437899999878983768403559998379999
Q gi|254780978|r  387 TLI-KR-DFTEAF-EQGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQL  463 (493)
Q Consensus       387 ~~~-~~-~~~~~~-~~~~D~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQi  463 (493)
                      ++. .. .+...+ +++||+||+||++.+++........        ...+|.++|++|+|++|||+|+. +|||+||||
T Consensus       389 ~~~~~~~~~~~~~~~~~~D~li~Pt~~~~~p~~~~~~~~--------~~~~t~~~Nl~G~PaisvP~G~~-~GLPvGlQl  459 (490)
T d1m22a_         389 RRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDF--------PGESYSAAAVAGYPSLTVPMGQI-DGLPVGLLF  459 (490)
T ss_dssp             HHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---CC--------TTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC--------HHHHHHHHHHHCCCEEEEECCCC-CCCCEEEEE
T ss_conf             999999999999866698889838998667757656665--------08897999995999799977889-997364888


Q ss_pred             ECCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             51899879999999999999257797888
Q gi|254780978|r  464 IGQPFREETLFSVGQIIEKEAGYFRPHKW  492 (493)
Q Consensus       464 ig~~~~D~~lL~~a~~~E~~~~~~~pp~~  492 (493)
                      ||++|+|++||++|++||++++|||||+|
T Consensus       460 ig~~~~D~~LL~~A~~lE~~~~~~~pP~~  488 (490)
T d1m22a_         460 MGTAWSEPKLIEMAYAYEQRTRARRPPHF  488 (490)
T ss_dssp             ECSTTCHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             89999999999999999972298999499


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]