Query gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 493
No_of_seqs 211 out of 7147
Neff 9.3
Searched_HMMs 13730
Date Wed Jun 1 11:25:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780978.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f2aa1 c.117.1.1 (A:1-485) Gl 100.0 0 0 857.2 35.1 479 3-490 2-482 (485)
2 d2gi3a1 c.117.1.1 (A:1-475) Gl 100.0 0 0 830.9 20.7 466 1-492 1-468 (475)
3 d1m22a_ c.117.1.1 (A:) Peptide 100.0 0 0 789.9 31.6 467 3-492 3-488 (490)
4 d1mt5a_ c.117.1.1 (A:) Fatty a 100.0 0 0 787.5 27.4 458 3-484 37-536 (537)
5 d1ocka_ c.117.1.1 (A:) Malonam 100.0 0 0 713.7 27.6 408 7-485 2-411 (412)
6 d1h1js_ a.140.2.1 (S:) S/mar D 49.4 3.6 0.00026 17.7 1.7 38 2-39 3-40 (44)
7 d2o9aa1 d.110.2.2 (A:1-180) Tr 38.5 9.4 0.00069 15.0 4.7 46 442-488 125-180 (180)
8 d1mkma2 d.110.2.2 (A:76-246) T 35.4 11 0.00077 14.6 5.4 45 441-486 117-171 (171)
9 d1tf1a_ d.110.2.2 (A:) Transcr 31.0 12 0.0009 14.2 5.4 46 441-487 128-183 (184)
10 d1zrja1 a.140.2.1 (A:1-37) Het 27.6 14 0.001 13.8 2.0 33 3-35 2-34 (37)
11 d2dloa2 g.39.1.3 (A:43-75) Thy 23.8 9.2 0.00067 15.0 0.4 13 69-81 7-19 (33)
12 d3pnpa_ c.56.2.1 (A:) Purine n 20.3 11 0.00078 14.6 0.1 11 49-59 7-17 (284)
No 1
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]}
Probab=100.00 E-value=0 Score=857.19 Aligned_cols=479 Identities=44% Similarity=0.755 Sum_probs=444.0
Q ss_pred CCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCC-CCCCCCCEEHHHHH
Q ss_conf 41345099999999968987899999999999996885558999888999999999999997888-98866121223200
Q gi|254780978|r 3 ELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGD-ARDLEGIPIGIKDC 81 (493)
Q Consensus 3 ~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~-~~pL~GiPi~vKD~ 81 (493)
.|++.||.||++++++|++||+||+++|++||+++|+++|||+++++|+|+++|+++|+++++|+ .+|||||||+|||+
T Consensus 2 ~~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~vKD~ 81 (485)
T d2f2aa1 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDN 81 (485)
T ss_dssp CSTTCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
T ss_conf 98578999999999859998999999999999986997419999499999999999999997799999817686988856
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00487855330376515754443210468887400001110000013566532222343356676765665544555444
Q gi|254780978|r 82 FATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSG 161 (493)
Q Consensus 82 ~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGSs~ 161 (493)
|+|+|++||+|+.+++++++.+|+++|++|+++|||++|||||+||+++..|.|.+||+|+||||+. ++||||||
T Consensus 82 ~~v~g~~tt~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~-----~~~GGSSg 156 (485)
T d2f2aa1 82 IITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHK-----AVPGGSSG 156 (485)
T ss_dssp BCBTTBCCCTTCGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTT-----BCCCSSSH
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCC
T ss_conf 0668972577584330687542101001100356530022223332143456675446767887765-----55677665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 54210012334322432112111130554111011545410001123322221212354432202344665302246743
Q gi|254780978|r 162 GSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDEC 241 (493)
Q Consensus 162 G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~d~~ 241 (493)
|+|++||+|++|+|||||||||||+||+||||||||||+||||+.|++|+++++||+|||||+|+|+++++++|+++++.
T Consensus 157 GsaaavA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~~~~ 236 (485)
T d2f2aa1 157 GSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVN 236 (485)
T ss_dssp HHHHHHHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCBTT
T ss_pred CCHHHHHHCCCCEEEECCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 42266775467657751788422222798595455489997789998887666783251449899999998610035655
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 10111124653101244432222223434444333201456556656654332211013568872145555444445678
Q gi|254780978|r 242 DATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISPAE 321 (493)
Q Consensus 242 D~~~~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~~~~~e 321 (493)
|+.+.+.+..++...+..+++++|||++.+++...++++++++++++++.|+++|++|+|+++|......+.++.+...+
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~i~~a~~~a~~~L~~~G~~v~ev~lp~~~~~~~~~~~~~~~e 316 (485)
T d2f2aa1 237 DSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSE 316 (485)
T ss_dssp BTTSCCCCCCCCSTTTTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 44567888645355625786687899973021476898999999999999997899999937986145678899999999
Q ss_pred HHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 988877653331031002-4310245543210000146666653023333320001223345789999999999998639
Q gi|254780978|r 322 ASSNLARYDGVRYGLRVE-GKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQG 400 (493)
Q Consensus 322 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~ 400 (493)
+..++..|++..+..... ..++.+++...+...++++++.++..+.......+.+..+.++++.+..+++.+.++|. +
T Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~-~ 395 (485)
T d2f2aa1 317 ASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFE-N 395 (485)
T ss_dssp HHHHTTTCSSSSSSCCCSSCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC-C
T ss_conf 998898744233110123314799999874342038899999986456532235899999999999887778999874-6
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 98999179989998776334673257887643789999987898376840355999837999951899879999999999
Q gi|254780978|r 401 VDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQII 480 (493)
Q Consensus 401 ~D~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~~~ 480 (493)
+|+||+||++.+|+++++.... ....+....||.++|++|+|+++||+|++ +|||+||||||++|+|++||++|++|
T Consensus 396 ~D~ll~Pt~~~~a~~~~~~~~~--~~~~~~~~~~t~~~Nl~G~PaisvP~G~~-dGlPvGlQiig~~~~D~~LL~~A~~~ 472 (485)
T d2f2aa1 396 YDVVVGPTAPTTAFNLGEEIDD--PLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRVAYQY 472 (485)
T ss_dssp CSEEEEESSSSSCCBTTTSTTC--HHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999957978777886544477--88876400899999997899299978789-99887688889999999999999999
Q ss_pred HHHHCCCCCC
Q ss_conf 9992577978
Q gi|254780978|r 481 EKEAGYFRPH 490 (493)
Q Consensus 481 E~~~~~~~pp 490 (493)
|++++|++-+
T Consensus 473 E~~~~~~~~~ 482 (485)
T d2f2aa1 473 ETQYNLHDVY 482 (485)
T ss_dssp HHHSCCTTTG
T ss_pred HHHCCCCCCC
T ss_conf 9607977479
No 2
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=0 Score=830.90 Aligned_cols=466 Identities=41% Similarity=0.724 Sum_probs=421.1
Q ss_pred CCCCH--HCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEHH
Q ss_conf 98413--4509999999996898789999999999999688555899988899999999999999788898866121223
Q gi|254780978|r 1 MSELN--FMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGDARDLEGIPIGI 78 (493)
Q Consensus 1 m~~~~--~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~pL~GiPi~v 78 (493)
|.|+. .+++ ++++|.|++|++||+++||+||+++|+.+|||++++++.|++ +.+|||||||+|
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~ri~~~~~~lna~~~~~~~~a~~------------~~gpL~GvPi~v 65 (475)
T d2gi3a1 1 MIDLDFRKLTI---EECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVE------------KKGKFWGIPVAI 65 (475)
T ss_dssp CSCSCGGGCCH---HHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCC------------CCSTTTTCEEEE
T ss_pred CCCCCHHHHHH---HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH------------CCCCCCCCEEEE
T ss_conf 98877478699---999982778899999999999998798689899929877500------------048878897888
Q ss_pred HHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20000487855330376515754443210468887400001110000013566532222343356676765665544555
Q gi|254780978|r 79 KDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGG 158 (493)
Q Consensus 79 KD~~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GG 158 (493)
||+|+++|++||+|+.+++++++++||++|++||++|||++||||||||+++.+|+|++||+|+||||+. ++|||
T Consensus 66 KD~~~~~g~~tt~Gs~~~~~~~~~~da~~v~~L~~aGaii~Gktn~~e~~~~~~~~~~~~G~t~nP~~~~-----~~~GG 140 (475)
T d2gi3a1 66 KDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLE-----RVPGG 140 (475)
T ss_dssp ETTBCCSSSCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTT-----BCCCS
T ss_pred ECCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEHHHCCCCCCCCCCHHHCCCCCCCCCCHHCCCCCCCCCC-----CCCCC
T ss_conf 8353777975486586455799998740255502047741235320000256555650000233322222-----24576
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 44454210012334322432112111130554111011545410001123322221212354432202344665302246
Q gi|254780978|r 159 SSGGSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGY 238 (493)
Q Consensus 159 Ss~G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~ 238 (493)
|||||||+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++||+|||||||+|+++++++|+|+
T Consensus 141 SSgGsaaavAag~~~~a~GtD~gGSiR~PA~~~Gv~G~kPt~G~i~~~g~~~~~~~~d~~GpmaRsv~D~alll~v~~g~ 220 (475)
T d2gi3a1 141 SSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGR 220 (475)
T ss_dssp SSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSC
T ss_pred CCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 54541344553376257544888602144697495456589987789999877888894277328899999986421013
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 74310111124653101244432222223434444333201456556656654332211013568872145555444445
Q gi|254780978|r 239 DECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIIS 318 (493)
Q Consensus 239 d~~D~~~~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~~~ 318 (493)
|+.|+.+.+.+.+. .......++++||+++.+++...+++++.++++++++.|+++|++|+|+++|.+.+....|+.+.
T Consensus 221 d~~d~~s~~~~~~~-~~~~~~~~~~~ri~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~V~ev~~p~~~~~~~~~~~i~ 299 (475)
T d2gi3a1 221 DENDATTVNRKVDF-LSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATYYVIA 299 (475)
T ss_dssp BTTBTTCCSCCCCS-STTTTSCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHH
T ss_pred CCCCCCCCCCCCCC-CHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 64433334546652-01003565566222210345577899999999999999998899999927986677899999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67898887765333103100243102455432100001466666530233333200012233457899999999999986
Q gi|254780978|r 319 PAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFE 398 (493)
Q Consensus 319 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~ 398 (493)
.+|+..++..|++..+..+.....+.+++...+...+++.++.++..+....+..+.+..+.++.+.|..+++.+.++|.
T Consensus 300 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (475)
T d2gi3a1 300 PAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLS 379 (475)
T ss_dssp HHHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999879875331011101344489999863101238899999984201104578999998777777777778999865
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 39989991799899987763346732578876437899999878983768403559998379999518998799999999
Q gi|254780978|r 399 QGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQ 478 (493)
Q Consensus 399 ~~~D~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~ 478 (493)
+ ||+||+||++.+|+++++..+ .........||.++|++|+|+++||+|++ +|||+||||||++|+|++||++|+
T Consensus 380 ~-~D~ll~Pt~~~~a~~~~~~~~---~~~~~~~~~~t~~~Nl~G~PaisvP~G~s-~GlPvGvQlig~~~~D~~LL~~A~ 454 (475)
T d2gi3a1 380 Q-YDAILTPTSPVTAFKIGEIKD---PLTYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVGVQVIGRRFADGKVFRIAR 454 (475)
T ss_dssp H-SSEEEEESCSSCCCBTTTCCC---HHHHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECCTTCHHHHHHHHH
T ss_pred C-CCEEEECCCCCCCCCCCCCCC---HHHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 8-999981898887777666566---58776666898999997898499968779-998775888899999999999999
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 99999257797888
Q gi|254780978|r 479 IIEKEAGYFRPHKW 492 (493)
Q Consensus 479 ~~E~~~~~~~pp~~ 492 (493)
+||++++|++.++|
T Consensus 455 ~~E~~~~~~~~~~~ 468 (475)
T d2gi3a1 455 AIEKNSPYNENGMF 468 (475)
T ss_dssp HHHHHCTTSBTTBC
T ss_pred HHHHCCCCCCCCCC
T ss_conf 99970897757999
No 3
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]}
Probab=100.00 E-value=0 Score=789.94 Aligned_cols=467 Identities=29% Similarity=0.396 Sum_probs=378.0
Q ss_pred CCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC---CCCCEEEEECHHHHHHHHHHHHHHHHCCCC-CCCCCCEEHH
Q ss_conf 413450999999999689878999999999999968---855589998889999999999999978889-8866121223
Q gi|254780978|r 3 ELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSN---SQMNAYIEVVAQKARAAAEESDKRIINGDA-RDLEGIPIGI 78 (493)
Q Consensus 3 ~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~---~~~na~~~~~~~~al~~A~~~d~~~~~~~~-~pL~GiPi~v 78 (493)
++..+||.||+++|++|++|++||+++|++||+++| +.+|||+++++| |+++|+++|+++++|+. +|||||||+|
T Consensus 3 ~~~~~~~~~l~~~~~~g~~s~~~~~~~~~~ri~~~~~~~~~lna~~~~~~~-a~~~A~~~d~~~~~g~~~gpL~GvP~~v 81 (490)
T d1m22a_ 3 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLL 81 (490)
T ss_dssp TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEE
T ss_pred CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHH-HHHHHHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf 840075999999998599979999999999999960738837999983999-9999999999997799899838787998
Q ss_pred HHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCC
Q ss_conf 2000048785533037651575444321046888740000111000001356653-----22223433566767656655
Q gi|254780978|r 79 KDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSN-----ETSYYGPVISPWRSMDSTDK 153 (493)
Q Consensus 79 KD~~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~-----~n~~~G~t~NP~~~~~~~~~ 153 (493)
||+|+|+|++||+|+..++++. ++||++|++|+++|||++||||||||+++.+| .|++||+|+||||+.
T Consensus 82 KD~~~v~g~~tt~Gs~~~~~~~-~~da~~v~~L~~~Gai~~gkTn~~e~~~~~~t~~~~~~n~~~G~t~NP~~~~----- 155 (490)
T d1m22a_ 82 KDNINAAPMATSAGSLALQGFR-PDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS----- 155 (490)
T ss_dssp ETTBCCTTSCCCTTCGGGTTCC-CCCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTT-----
T ss_pred ECCCCCCCCCCCCCCHHHCCCC-CCCCHHHHHHHCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC-----
T ss_conf 7434667974677465542668-7662666642034310100456606653233334443456789866865455-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 44555444542100123343224321121111305541110115454100011233222212123544322023446653
Q gi|254780978|r 154 FTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLK 233 (493)
Q Consensus 154 ~~~GGSs~G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~ 233 (493)
++||||||||||+||+|++|+|+|||||||||+||+||||||||||+||||+.|+++.++++|++|||+|+|+|++++++
T Consensus 156 ~~~GGSSgGsaaavA~g~~~~aiGsD~gGSiR~PAa~cGl~G~KPT~G~is~~G~~~~~~~~d~~Gp~ar~v~D~~~~~~ 235 (490)
T d1m22a_ 156 HSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT 235 (490)
T ss_dssp BCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 57788743177777776300354533347764320114515885124765567864445764677886465225543223
Q ss_pred HCCCCCCCCCCCCCCCCCCCC---C-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 022467431011112465310---1-244432222223434444333201456556656654332211013568872145
Q gi|254780978|r 234 AIAGYDECDATCVNLPVPDYE---R-ALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQY 309 (493)
Q Consensus 234 vl~g~d~~D~~~~~~~~~~~~---~-~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~ 309 (493)
+|.+.|+.|+.....+.+... . ......+++++++..+.. ..++.+.+.++++++.|+++|++|+|+++|.+..
T Consensus 236 vl~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~a~~~l~~~g~~v~ev~~p~~~~ 313 (490)
T d1m22a_ 236 AIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPL--LKYRGMPPLIEQAATELRRAGAVVVPVELPNQGA 313 (490)
T ss_dssp HHCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGG--GGSTTHHHHHHHHHHHHHHTTCEEEEECCTTTTT
T ss_pred HHHCCCCCCCCCCHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 33014566753100012233104431265444453211342234--5551112565444788763023211024773477
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH---HHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 555444445678988877653331031002431024554---32100001466666530233333200012233457899
Q gi|254780978|r 310 ALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYE---NTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIR 386 (493)
Q Consensus 310 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r 386 (493)
....++.+...|+..++..|............++..... ......+++++..+.. .........+.++.+.+
T Consensus 314 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 388 (490)
T d1m22a_ 314 WAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEAD-----ATAGLADPAYIRARSDA 388 (490)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHH-----TCCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH-----HHHCCCHHHHHHHHHHH
T ss_conf 7889999999999863466765313431007888888775421013320124567888-----75302204678899999
Q ss_pred HHH-HH-HHHHHH-HCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEE
Q ss_conf 999-99-999998-639989991799899987763346732578876437899999878983768403559998379999
Q gi|254780978|r 387 TLI-KR-DFTEAF-EQGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQL 463 (493)
Q Consensus 387 ~~~-~~-~~~~~~-~~~~D~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQi 463 (493)
++. .. .+...+ +++||+||+||++.+++........ ...+|.++|++|+|++|||+|+. +|||+||||
T Consensus 389 ~~~~~~~~~~~~~~~~~~D~li~Pt~~~~~p~~~~~~~~--------~~~~t~~~Nl~G~PaisvP~G~~-~GLPvGlQl 459 (490)
T d1m22a_ 389 RRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDF--------PGESYSAAAVAGYPSLTVPMGQI-DGLPVGLLF 459 (490)
T ss_dssp HHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---CC--------TTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC--------HHHHHHHHHHHCCCEEEEECCCC-CCCCEEEEE
T ss_conf 999999999999866698889838998667757656665--------08897999995999799977889-997364888
Q ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 51899879999999999999257797888
Q gi|254780978|r 464 IGQPFREETLFSVGQIIEKEAGYFRPHKW 492 (493)
Q Consensus 464 ig~~~~D~~lL~~a~~~E~~~~~~~pp~~ 492 (493)
||++|+|++||++|++||++++|||||+|
T Consensus 460 ig~~~~D~~LL~~A~~lE~~~~~~~pP~~ 488 (490)
T d1m22a_ 460 MGTAWSEPKLIEMAYAYEQRTRARRPPHF 488 (490)
T ss_dssp ECSTTCHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 89999999999999999972298999499
No 4
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=0 Score=787.51 Aligned_cols=458 Identities=21% Similarity=0.295 Sum_probs=366.2
Q ss_pred CCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCC-CCCCCCCEEHHHHH
Q ss_conf 41345099999999968987899999999999996885558999888999999999999997888-98866121223200
Q gi|254780978|r 3 ELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGD-ARDLEGIPIGIKDC 81 (493)
Q Consensus 3 ~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~-~~pL~GiPi~vKD~ 81 (493)
+|..|||.||+++|++|++|++||+++|++||+++|+.+|||+++++|.+++.| +++ .+|||||||+|||+
T Consensus 37 ~i~~ls~~el~~~i~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~~~~~a--------~~~~~gpL~GvPi~vKD~ 108 (537)
T d1mt5a_ 37 ALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLS--------QAPRQGLLYGVPVSLKEC 108 (537)
T ss_dssp HHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCSHHHH--------TCCTTSTTTTCEEEEETT
T ss_pred HHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHH--------CCCCCCCCCCCEEEEECC
T ss_conf 898682999999997599989999999999999978876889880988999997--------599989858896876736
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00487855330376515754443210468887400001110000013566532222343356676765665544555444
Q gi|254780978|r 82 FATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSG 161 (493)
Q Consensus 82 ~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGSs~ 161 (493)
|+|+|++||+|+..++++++.+||++|++||++||||+||||||||+++.+|+|++||+|+||||+. ++||||||
T Consensus 109 ~~~~g~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~gkTn~~e~~~~~~~~n~~~G~t~NP~~~~-----~~~GGSSg 183 (537)
T d1mt5a_ 109 FSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSS-----KSPGGSSG 183 (537)
T ss_dssp SCCBTSBCCSSCGGGSSCBBSSCCHHHHHHHHTTCEEEEEECCCTTSCCSSCCCTTTCCCCCSSCTT-----SCCCSSSH
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCC-----CCCCCCCC
T ss_conf 2767976376696456999984389999998578777303233332234421232200134444555-----34678767
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 5421001233432243211211113055411101154541000112332222----121235443220234466530224
Q gi|254780978|r 162 GSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAP----SLDQAGIITRTVRDSAILLKAIAG 237 (493)
Q Consensus 162 G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~----~ld~~Gpmarsv~D~~~~l~vl~g 237 (493)
|||++||+|++|+++|||||||||+||+||||||||||+||||+.|+.|.++ ++|++|||||||+|+++++++|+|
T Consensus 184 Gsaaavaag~~~~a~GtD~gGSiR~PAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~d~~GpmaRsv~D~a~~l~~l~g 263 (537)
T d1mt5a_ 184 GEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLC 263 (537)
T ss_dssp HHHHHHGGGSCSEEEEEESSSTTHHHHHHHTCEEEECCTTSSCCTTCCCSSCCCCSSCCEEEEEESSHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 86432202341035432226453102553275023213113578897875445544445678863328899999987517
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-
Q ss_conf 6743101111246531012444322222234344443332014565566566543322110135688721455554444-
Q gi|254780978|r 238 YDECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYI- 316 (493)
Q Consensus 238 ~d~~D~~~~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~- 316 (493)
+|+.|......+.+ +......+++++|||++.++++..+++++.++++++++.|+++||+|+|+++|.+.+....+..
T Consensus 264 ~d~~d~~~~~~~~~-~~~~~~~~~k~lRIg~~~~~~~~~~~p~v~~a~~~a~~~L~~~Ga~Vvev~~~~~~~~~~~~~~~ 342 (537)
T d1mt5a_ 264 EHLFTLDPTVPPLP-FREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAG 342 (537)
T ss_dssp HHHHHSCTTSCCCC-CCHHHHSCCSCCEEEECSCCSSSCCCHHHHHHHHHHHHHHHHTTCEEEECCCTTHHHHHHTTHHH
T ss_pred CCCCCCCCCCCCCH-HHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 88644433457501-45554200100202221254445344899998765577643666269856885267788888899
Q ss_pred HHHHHHHHH-HHHHHHHHCCCCCCCCCHHHHHHHH---H--HHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 456789888-7765333103100243102455432---1--000014666665302333332000122334578999999
Q gi|254780978|r 317 ISPAEASSN-LARYDGVRYGLRVEGKDILEMYENT---R--SIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIK 390 (493)
Q Consensus 317 ~~~~e~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~ 390 (493)
....+.... +..+.... ......++....+.. + ...+...+..++. ............+|.++...+..++
T Consensus 343 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (537)
T d1mt5a_ 343 GLFSDGGRSFLQNFKGDF--VDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLA-AFLNSMRPRSAEKLWKLQHEIEMYR 419 (537)
T ss_dssp HHSTTTTHHHHGGGTTCC--CCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHH-HHHHHTSCCBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999876530454--3336899999874036789999987501028899-9987225220999999999999999
Q ss_pred HHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEE-----------------
Q ss_conf 99999986-399899917998999877633467325788764378999998789837684035-----------------
Q gi|254780978|r 391 RDFTEAFE-QGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAAL----------------- 452 (493)
Q Consensus 391 ~~~~~~~~-~~~D~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~----------------- 452 (493)
+.+.+.|. .++|+||+||++ ++++++..... .....||.+||++|+|+++||+|+
T Consensus 420 ~~~~~~~~~~~~Dvll~Pt~~-pa~~~~~~~~~------~~~~~~T~~~NllG~PaisvP~g~v~~~~~~~~~~~~~~~~ 492 (537)
T d1mt5a_ 420 QSVIAQWKAMNLDVLLTPMLG-PALDLNTPGRA------TGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFG 492 (537)
T ss_dssp HHHHHHHHHTTCSEEEEECCC-SCCCSSCGGGC------GGGGHHHHHHHHTTCCEEEEEEEECCTTTTTGGGSCCCSSC
T ss_pred HHHHHHHHHCCCCEEEECCCC-CCCCCCCHHHH------HCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 999999866699889969988-86676872554------24621689899858996999767666433211001223333
Q ss_pred ------------CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf ------------59998379999518998799999999999992
Q gi|254780978|r 453 ------------CEKKMPLGLQLIGQPFREETLFSVGQIIEKEA 484 (493)
Q Consensus 453 ------------~~~GLPvGiQiig~~~~D~~lL~~a~~~E~~~ 484 (493)
+.+|||+||||||++|+|++||++|++||+++
T Consensus 493 ~~~~~~~~~~~~~~~GLPvGlQlvg~~~~D~~lL~~A~~lE~~L 536 (537)
T d1mt5a_ 493 DIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLM 536 (537)
T ss_dssp SHHHHHHHHHHSSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 21111123455789998876777899999999999999999976
No 5
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]}
Probab=100.00 E-value=0 Score=713.70 Aligned_cols=408 Identities=25% Similarity=0.389 Sum_probs=348.5
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCC-CCCCCCCEEHHHHHCCCC
Q ss_conf 5099999999968987899999999999996885558999888999999999999997888-988661212232000048
Q gi|254780978|r 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGD-ARDLEGIPIGIKDCFATK 85 (493)
Q Consensus 7 ~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~-~~pL~GiPi~vKD~~~v~ 85 (493)
|||.||++++++|++|++||+++|++||+++|+.+||+++.+.+ +.++ .+|||||||+|||+|+|+
T Consensus 2 ls~~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~-------------~~~~~~gpL~GvPi~vKD~~~v~ 68 (412)
T d1ocka_ 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKS-------------ARAQASGPLRGIAVGIKDIIDTA 68 (412)
T ss_dssp CCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-------------CCCCSSSTTTTCEEEEETTBCCS
T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH-------------HCCCCCCCCCCCEEEEECCCCCC
T ss_conf 87899999998699989999999999999769615981744398-------------60766798688879987661778
Q ss_pred CCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78553303765157544432104688874000011100000135665322223433566767656655445554445421
Q gi|254780978|r 86 GIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSA 165 (493)
Q Consensus 86 g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGSs~G~a~ 165 (493)
|++||+|+..++++++.+|+++|++|+++|||++|||||+||+++ .+|.+.|||++. +++||||||+|+
T Consensus 69 G~~tt~Gs~~~~~~~~~~~a~~V~~L~~aGaii~gkt~~~e~~~~------~~~~~~np~~~~-----~~~GgSSgG~aa 137 (412)
T d1ocka_ 69 NMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFASR------DPTATLNPHNTG-----HSPGGSSSGSAA 137 (412)
T ss_dssp SSCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGSS------CCCSCCBTTBTT-----BCCCSSSHHHHH
T ss_pred CCCCCCCCHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCC------CCCCCCCCCCCC-----CCCCCCCCCCEE
T ss_conf 974166486661788753014776520124330000016665025------665433344666-----667776787611
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 00123343224321121111305541110115454100011233222212123544322023446653022467431011
Q gi|254780978|r 166 AVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATC 245 (493)
Q Consensus 166 ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~d~~D~~~ 245 (493)
+||+|++++++|||||||||+||+||||||||||+||||+.|+.|+++++|++|||||||+|+++++++|.+.|+.|+.
T Consensus 138 ava~g~~~~a~GsDtgGSiR~PAa~cGi~GlKPT~G~v~~~g~~~~s~~~dt~Gp~arsv~Dl~~~l~~i~g~d~~~~~- 216 (412)
T d1ocka_ 138 AVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGI- 216 (412)
T ss_dssp HHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSC-
T ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHCCHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-
T ss_conf 1103456655765402344101555302101344100123344443201111223445188999999864288721244-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHHHH
Q ss_conf 1124653101244432222223434444333201456556656654332211013568872145-555444445678988
Q gi|254780978|r 246 VNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQY-ALPAYYIISPAEASS 324 (493)
Q Consensus 246 ~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~-~~~~~~~~~~~e~~~ 324 (493)
.+.++.|++++.++++..+++++.+.++++++.|+++|+++++++++.... ....+..+...|...
T Consensus 217 -------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~v~e~~~~~~~~~~~~~~~~~~~~e~~~ 283 (412)
T d1ocka_ 217 -------------VPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHR 283 (412)
T ss_dssp -------------CCCSSCEEEECCCGGGCCCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf -------------7764443344323233451067777888888888876402322345310233345554112578988
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 87765333103100243102455432100001466666530233333200012233457899999999999986399899
Q gi|254780978|r 325 NLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVI 404 (493)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~l 404 (493)
.+..+ +.. ....+.+.++.++..+ ......+|.++++.|..++++|.++|. +||+|
T Consensus 284 ~~~~~-----------------~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~r~~~~~~~~~~f~-~~D~l 339 (412)
T d1ocka_ 284 ALAWE-----------------FSE-HHDEIAPMLRASLDAT-----VGLTPKEYDEARRIGRRGRRELGEVFE-GVDVL 339 (412)
T ss_dssp HTHHH-----------------HHH-SGGGSCHHHHHHHHHT-----TTCCHHHHHHHHHHHHHHHHHHHHHTT-TCSEE
T ss_pred HHHHH-----------------HCC-CCCCCHHHHHHHHHHH-----HCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCEE
T ss_conf 77776-----------------402-4232124554433321-----012221000112467899999999982-79999
Q ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 91799899987763346732578876437899999878983768403559998379999518998799999999999992
Q gi|254780978|r 405 LTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEKEA 484 (493)
Q Consensus 405 I~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~~~E~~~ 484 (493)
|+||+|.++|+++...... ..||.++|++|+|++|||+|. .+|||+||||||++++|++||++|++||+++
T Consensus 340 l~Pt~p~~ap~~~~~~~~~--------~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQiig~~~~D~~lL~~A~~~E~al 410 (412)
T d1ocka_ 340 LTYSAPGTAPAKALASTGD--------PRYNRLWTLMGNPCVNVPVLK-VGGLPIGVQVIARFGNDAHALATAWFLEDAL 410 (412)
T ss_dssp EEESSSSSCCBGGGCCCCC--------CTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCCCCC--------HHHHHHHHHHCCCEEEEECCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 9689988776300045687--------577599999789849983668-9996076888899998999999999999985
Q ss_pred C
Q ss_conf 5
Q gi|254780978|r 485 G 485 (493)
Q Consensus 485 ~ 485 (493)
+
T Consensus 411 g 411 (412)
T d1ocka_ 411 A 411 (412)
T ss_dssp T
T ss_pred C
T ss_conf 8
No 6
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=49.37 E-value=3.6 Score=17.68 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=28.2
Q ss_pred CCCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 84134509999999996898789999999999999688
Q gi|254780978|r 2 SELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNS 39 (493)
Q Consensus 2 ~~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~ 39 (493)
.|+..|++.||.+.++++-+...-.=...++|+..++.
T Consensus 3 ~dy~~ltv~eLK~~lk~rgL~~sG~Ka~Li~RL~~~d~ 40 (44)
T d1h1js_ 3 ADYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDE 40 (44)
T ss_dssp CSGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred CCHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 76777809999999998778988889999999998746
No 7
>d2o9aa1 d.110.2.2 (A:1-180) Transcriptional regulator IclR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=38.52 E-value=9.4 Score=14.96 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=32.4
Q ss_pred CCCEEEEEEEECCCCCEE-EEEEECCCC--CHH-------HHHHHHHHHHHHHCCCC
Q ss_conf 898376840355999837-999951899--879-------99999999999925779
Q gi|254780978|r 442 GLPAISVPAALCEKKMPL-GLQLIGQPF--REE-------TLFSVGQIIEKEAGYFR 488 (493)
Q Consensus 442 G~PaisiP~G~~~~GLPv-GiQiig~~~--~D~-------~lL~~a~~~E~~~~~~~ 488 (493)
|.-++++|+ ++.+|.|+ .|.+.++.. .++ .|++.|..+++.+|.+|
T Consensus 125 gv~~iA~PV-~~~~g~~~aalsv~~~~~r~~~~~~~~~~~~L~~~a~~is~~lGg~r 180 (180)
T d2o9aa1 125 GLRCLAACI-FDEHREPFAAISISGPISRITDDRVTEFGAMVIKAAKEVTLAYGGMR 180 (180)
T ss_dssp TEEEEEEEE-ECTTSCEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEE-ECCCCCEEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 716899999-87999888999998884649999999999999999999999866899
No 8
>d1mkma2 d.110.2.2 (A:76-246) Transcriptional regulator IclR, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=35.37 E-value=11 Score=14.64 Aligned_cols=45 Identities=27% Similarity=0.530 Sum_probs=31.9
Q ss_pred HCCCEEEEEEEECCCCCEEE-EEEECCC--CCHH-------HHHHHHHHHHHHHCC
Q ss_conf 78983768403559998379-9995189--9879-------999999999999257
Q gi|254780978|r 441 AGLPAISVPAALCEKKMPLG-LQLIGQP--FREE-------TLFSVGQIIEKEAGY 486 (493)
Q Consensus 441 ~G~PaisiP~G~~~~GLPvG-iQiig~~--~~D~-------~lL~~a~~~E~~~~~ 486 (493)
.|.-++++|+ ++.+|-|++ |.+.+.. +.++ .|.+.|..+++.+||
T Consensus 117 ~gv~~iA~Pi-~~~~g~~~aalsv~~~~~~~~~~~~~~~~~~L~~~a~~Is~~LG~ 171 (171)
T d1mkma2 117 IGIMCVGVPI-FDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY 171 (171)
T ss_dssp TTEEEEEEEE-ECTTSCEEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEE-ECCCCCEEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3342899999-879998899999986846599999999999999999999997197
No 9
>d1tf1a_ d.110.2.2 (A:) Transcriptional regulator AllR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.98 E-value=12 Score=14.18 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=33.5
Q ss_pred HCCCEEEEEEEECCCCCEE-EEEEECCC--CCH-------HHHHHHHHHHHHHHCCC
Q ss_conf 7898376840355999837-99995189--987-------99999999999992577
Q gi|254780978|r 441 AGLPAISVPAALCEKKMPL-GLQLIGQP--FRE-------ETLFSVGQIIEKEAGYF 487 (493)
Q Consensus 441 ~G~PaisiP~G~~~~GLPv-GiQiig~~--~~D-------~~lL~~a~~~E~~~~~~ 487 (493)
.|.-++++|+ ++.+|.|+ .|.+.+.. +.+ ..|.+.|..+++.+|++
T Consensus 128 ~gv~~iA~PV-~~~~g~~~~alsv~~~~~r~~~~~~~~~~~~l~~~A~~Is~~LG~~ 183 (184)
T d1tf1a_ 128 VGLNCIASAI-YDDVGSVVAAISISGPSSRLTEDRFVSQGELVRDTARDISTALGLK 183 (184)
T ss_dssp TTEEEEEEEE-ECTTSCEEEEEEEEEETTTSCGGGHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEEE-ECCCCCEEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6846999999-9999989999999989687899899999999999999999987778
No 10
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.57 E-value=14 Score=13.80 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=18.9
Q ss_pred CCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 413450999999999689878999999999999
Q gi|254780978|r 3 ELNFMAVSESRDRLRSKDISAVELVDSYIQAIE 35 (493)
Q Consensus 3 ~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~ 35 (493)
|+..|++.||.+.++.+-+...-.=...++|+.
T Consensus 2 d~~~m~V~eLK~~Lk~rgL~~sG~Ka~Li~RL~ 34 (37)
T d1zrja1 2 DVRRLKVNELREELQRRGLDTRGLKAELAERLQ 34 (37)
T ss_dssp CGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 868774999999999878899888999999999
No 11
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.84 E-value=9.2 Score=15.03 Aligned_cols=13 Identities=38% Similarity=0.831 Sum_probs=9.9
Q ss_pred CCCCCCEEHHHHH
Q ss_conf 8866121223200
Q gi|254780978|r 69 RDLEGIPIGIKDC 81 (493)
Q Consensus 69 ~pL~GiPi~vKD~ 81 (493)
..|.||||+|-..
T Consensus 7 ~~LDGvPFtvD~~ 19 (33)
T d2dloa2 7 RGLDGIPFTVDAT 19 (33)
T ss_dssp CBCTTSCEECCTT
T ss_pred CCCCCCCEEECCC
T ss_conf 6148885777589
No 12
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.32 E-value=11 Score=14.61 Aligned_cols=11 Identities=9% Similarity=-0.094 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999999
Q gi|254780978|r 49 AQKARAAAEES 59 (493)
Q Consensus 49 ~~~al~~A~~~ 59 (493)
+|++.+.++.+
T Consensus 7 ~~~~~~~~~~i 17 (284)
T d3pnpa_ 7 YEDYQDTAKWL 17 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
Done!