RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Candidatus Liberibacter asiaticus str. psy62] (493 letters) >3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Score = 449 bits (1157), Expect = e-127 Identities = 219/485 (45%), Positives = 312/485 (64%), Gaps = 15/485 (3%) Query: 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIING 66 ++SE R+ L+ ++S E+V+S+ + ++ AYI + KA AE +R Sbjct: 5 KSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER---- 60 Query: 67 DARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDE 126 L GIPI +KD +G T S IL+ F Y++TV ++L GA+++GK N+DE Sbjct: 61 -ELPLFGIPIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDE 119 Query: 127 FAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQ 186 FAMGSS E S + P +PW + PGGSSGGS+A+VA S+G+DTGGSIRQ Sbjct: 120 FAMGSSTEYSAFFPTKNPWD-----LERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQ 174 Query: 187 PASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCV 246 PASF G +GIKPTYGR SR G+++FA SLDQ G+ R D A++L+ I+G+DE D+T Sbjct: 175 PASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSA 234 Query: 247 NLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPH 306 +PVP++ + + ++G+ +G+PKE+ L P + + ++ I L+ G +I E+SLPH Sbjct: 235 KVPVPEWSEEVKKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELEKEGFEIKEVSLPH 294 Query: 307 TQYALPAYYIISPAEASSNLARYDGVRYGLRV-EGKDILEMYENTRSIGFGQEVKHRIMI 365 +Y++P YYII+P+EASSNLARYDGVRYG R E KDI EMY TR GFG EVK RIM+ Sbjct: 295 VKYSIPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIML 354 Query: 366 GTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEENNSGS 425 GT+ LS+ YD++YL+A+K+R LI DF +AFE+ VDVI +PTTPT F G+ N Sbjct: 355 GTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEE-VDVIASPTTPTLPFKFGERLENPIE 413 Query: 426 MGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEKEAG 485 M +D+ TV N+AGLPAIS+P A + +P+G QLIG+ + E TL + + E++ Sbjct: 414 M--YLSDILTVPANLAGLPAISIPIAWKD-GLPVGGQLIGKHWDETTLLQISYLWEQKFK 470 Query: 486 YFRPH 490 ++ Sbjct: 471 HYEKI 475 >3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Score = 449 bits (1156), Expect = e-127 Identities = 190/482 (39%), Positives = 287/482 (59%), Gaps = 20/482 (4%) Query: 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIING 66 M E R R+ ++S +E+ +Y++ ++ + + A++ + + AE D Sbjct: 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNER-LLEEAEAVDPG---- 55 Query: 67 DARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDE 126 L G+ + +KD AT+G+ T A S +L+ F P YE+T +L GA++LGK N+DE Sbjct: 56 --LPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDE 113 Query: 127 FAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQ 186 F MGSS E S + P +P+ PGGSSGGS+AA+A L ++G+DTGGS+RQ Sbjct: 114 FGMGSSTEHSAFFPTKNPFD-----PDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQ 168 Query: 187 PASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCV 246 PA+F G G+KPTYGR SR G+I++A SLDQ G + R+VRD A+L+ A AG D DAT + Sbjct: 169 PAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSL 228 Query: 247 NLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPH 306 +LP P ++ AL+ + + +G+ +E L SP +++ ++ + ++ G + E+S P Sbjct: 229 DLP-PRFQEALEGPLPPLRLGVVREA-LAGNSPGVERALEEALKVFRELGLSVREVSWPS 286 Query: 307 TQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIG 366 AL AYYI++PAEASSNLARYDG YG R G+++ M E TR++ FG EVK R+++G Sbjct: 287 LPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRAL-FGLEVKRRVLVG 345 Query: 367 TYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEENNSGSM 426 T+VLSS Y+++Y RA+ R +K + F + VD++L PTTP AFP G + + Sbjct: 346 TFVLSSGYYEAYYGRAQAFRRRLKAEAQALFRE-VDLLLLPTTPHPAFPFGARRD---PL 401 Query: 427 GHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEKEAGY 486 D++TV N+ GLPA+S PA E +P+GLQL+ +E L E+ Sbjct: 402 AMYREDLYTVGANLTGLPALSFPAGF-EGHLPVGLQLLAPWGEDERLLRAALAFEEATAR 460 Query: 487 FR 488 Sbjct: 461 AH 462 >3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Score = 435 bits (1118), Expect = e-122 Identities = 216/492 (43%), Positives = 315/492 (64%), Gaps = 12/492 (2%) Query: 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD 60 MS + + +V ++ K I ++V AIE ++ + +++ + + A A+E D Sbjct: 1 MS-IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELD 59 Query: 61 KRIINGDARD-LEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVML 119 + L GIP+GIKD T G+ T S +L+GF P YESTV +KL AV++ Sbjct: 60 ELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLI 119 Query: 120 GKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTD 179 GKLNMDEFAMG S ETSY+ ++P+ K PGGSSGGS+AAVA L S+G+D Sbjct: 120 GKLNMDEFAMGGSTETSYFKKTVNPFD-----HKAVPGGSSGGSAAAVAAGLVPLSLGSD 174 Query: 180 TGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYD 239 TGGSIRQPA++ G VG+KPTYGR SR G+++FA SLDQ G +TR V+D+AI+L+AI+G D Sbjct: 175 TGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGAD 234 Query: 240 ECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKI 299 D+T + D+ + + I+G+ V +PKEY + ++ + + Q + LK GA + Sbjct: 235 VNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVV 294 Query: 300 VEISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRV-EGKDILEMYENTRSIGFGQE 358 E+SLP+T++ +P+YY+I+ +EASSNL+R+DG+RYG E + E+Y+ +RS GFG+E Sbjct: 295 EEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKE 354 Query: 359 VKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGK 418 VK RI +GT+ LSS YD++Y +++K+RTLIK DF + FE DV++ PT PT+AF LG+ Sbjct: 355 VKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFEN-YDVVVGPTAPTTAFNLGE 413 Query: 419 EENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQ 478 E ++ +M ND+ T VN+AGLP ISVP P+GLQ IG+PF E+TL+ V Sbjct: 414 EIDDPLTMYA--NDLLTTPVNLAGLPGISVPCGQ-SNGRPIGLQFIGKPFDEKTLYRVAY 470 Query: 479 IIEKEAGYFRPH 490 E + + Sbjct: 471 QYETQYNLHDVY 482 >2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structural genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 Length = 476 Score = 386 bits (991), Expect = e-108 Identities = 193/492 (39%), Positives = 300/492 (60%), Gaps = 24/492 (4%) Query: 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD 60 M +L+F ++ + L+ + +L ++ I+ + + A+I V + Sbjct: 2 MIDLDFRKLT-IEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKK---- 56 Query: 61 KRIINGDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLG 120 GIP+ IKD T G+ T S IL+ + +++TV +K+ + G V++G Sbjct: 57 --------GKFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVG 108 Query: 121 KLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDT 180 K N+DEFAMGSS E S + P +PW PGGSSGGS+AAV+ + A++G+DT Sbjct: 109 KANLDEFAMGSSTERSAFFPTRNPWDLE-----RVPGGSSGGSAAAVSAGMVVAALGSDT 163 Query: 181 GGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDE 240 GGS+RQPAS G VG KPTYG SR G+++FA SLDQ G IT+TVRD+AIL++ I+G DE Sbjct: 164 GGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDE 223 Query: 241 CDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIV 300 DAT VN V +++ + GM +P+E + + + +++ + L+ GAK+ Sbjct: 224 NDATTVNRKVDFL-SEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVE 282 Query: 301 EISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVK 360 + +PH +Y++ YY+I+PAEASSNLAR+DGV+YGLR++ K + EMY TR++GFG+EV+ Sbjct: 283 RVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVR 342 Query: 361 HRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEE 420 RIMIGT+ LS+ Y++++ +A K+R I + E Q D ILTPT+P +AF +G+ + Sbjct: 343 RRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQ-YDAILTPTSPVTAFKIGEIK 401 Query: 421 NNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQII 480 + + + D+FT+ N+AGLPAISVP +P+G+Q+IG+ F + +F + + I Sbjct: 402 D---PLTYYLMDIFTIPANLAGLPAISVPFGF-SNNLPVGVQVIGRRFADGKVFRIARAI 457 Query: 481 EKEAGYFRPHKW 492 EK + Y + Sbjct: 458 EKNSPYNENGMF 469 >1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Score = 331 bits (848), Expect = 3e-91 Identities = 147/510 (28%), Positives = 235/510 (46%), Gaps = 44/510 (8%) Query: 3 ELNFMAVSESRDRLRSKDISAVELVDSY---IQAIENSNSQMNAYIEVVAQKARAAAEES 59 V++ + R+ + ++ + L +Y I A++ + ++ A IE+ A A E Sbjct: 7 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAER 65 Query: 60 DKRIINGDARD-LEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVM 118 D+ +G R L GIP+ +KD + T A S L GFRP ++ + ++L D GAV+ Sbjct: 66 DRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPD-DAYLVRRLRDAGAVV 124 Query: 119 LGKLNMDEFAMGS-----SNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCA 173 LGK N+ E+A S ++ G +P+R +P GSS GS+ AVA L + Sbjct: 125 LGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS-----HSPCGSSSGSAVAVAANLAS 179 Query: 174 ASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLK 233 +IGT+T GSI PA+ G VG+KPT G SR GII + S D AG + R+V D+A +L Sbjct: 180 VAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT 239 Query: 234 AIAGYDECDATCVNLP---VPDYERALD-QSIQGMTVGIPKEYRLDYLSPTIDKTWQQGI 289 AIAG D+ D +P V DY LD Q ++G +G+ + L Y + +Q Sbjct: 240 AIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKY--RGMPPLIEQAA 297 Query: 290 SWLKDAGAKIVEISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILE---M 346 + L+ AGA +V + LP+ A + E + L RY D++ Sbjct: 298 TELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQA 357 Query: 347 YENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKR----DFTEAFEQGVD 402 + FGQE ++ ++ D Y+RAR + D A Q +D Sbjct: 358 HSKQELGLFGQE-----LLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQ-LD 411 Query: 403 VILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQ 462 ++ PTT + + ++ G A +AG P+++VP + +P+GL Sbjct: 412 ALVAPTTGVAWPIRSEGDDFPGES--------YSAAAVAGYPSLTVPMGQID-GLPVGLL 462 Query: 463 LIGQPFREETLFSVGQIIEKEAGYFRPHKW 492 +G + E L + E+ RP + Sbjct: 463 FMGTAWSEPKLIEMAYAYEQRTRARRPPHF 492 >1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Score = 285 bits (729), Expect = 2e-77 Identities = 106/480 (22%), Positives = 189/480 (39%), Gaps = 71/480 (14%) Query: 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIING 66 +++++ + R+ + ++S + AIE +++A++ + ARA A Sbjct: 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRH-DKSARAQA---------- 50 Query: 67 DARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDE 126 + L GI +GIKD T + T+ S I G++P ++ V L GA ++GK Sbjct: 51 -SGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTA 109 Query: 127 FAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQ 186 FA T + S GG+S GS+AAV + ++GT TGGS+ + Sbjct: 110 FASRDPTATLNP---HNTGHSP--------GGASSGSAAAVGAGMIPLALGTQTGGSVIR 158 Query: 187 PASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCV 246 PA++ GT IKP++ +G+ ++ +LD G+ D A L A+ G E Sbjct: 159 PAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIV- 217 Query: 247 NLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPH 306 + +G+ ++ + P ++ Q I + AGA + I LP Sbjct: 218 -------------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPE 264 Query: 307 TQY-ALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMI 365 + A + II EA LA + + ++ Sbjct: 265 AVHEAWRIHPIIQDFEAHRALAWEFSEHH-----------------------DEIAPMLR 301 Query: 366 GTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEENNSGS 425 + + Y AR+I +R+ E FE GVDV+LT + P +A Sbjct: 302 ASLDATVGLTPKEYDEARRIGRRGRRELGEVFE-GVDVLLTYSAPGTAPAKALASTG--- 357 Query: 426 MGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEKEAG 485 + + + G P ++VP +P+G+Q+I + + + +E Sbjct: 358 -----DPRYNRLWTLMGNPCVNVPVLK-VGGLPIGVQVIARFGNDAHALATAWFLEDALA 411 >3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Score = 272 bits (696), Expect = 1e-73 Identities = 133/492 (27%), Positives = 215/492 (43%), Gaps = 20/492 (4%) Query: 8 AVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGD 67 L + + ++VD + + A + +A I Sbjct: 25 TARLEWPALIDGALGSYDVVDQLYADEATPPTTSREHAVPSASENPLSAWYVTTSIPPTS 84 Query: 68 ARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEF 127 L G + IKD G+ S ++GF P ++TV +L GA + GK ++ Sbjct: 85 DGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDL 144 Query: 128 AMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQP 187 S+ T GPV +PW + GGSSGGS+A VA +IG D GGSIR P Sbjct: 145 CFSGSSFTPASGPVRNPWD-----RQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIP 199 Query: 188 ASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCVN 247 A+F G VG KPT+G G ++D G ITRTV D+A++L IAG D D + Sbjct: 200 AAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQAD 259 Query: 248 -LPVPDYERALDQSIQGMTVGIPKEYRLDYLS-PTIDKTWQQGISWLKDAGAKIVEISLP 305 + DY LD + G+ +GI +E +S P +D + L + G + E+++P Sbjct: 260 SVEAGDYLSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVNIP 319 Query: 306 HTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYEN------TRSIGFGQEV 359 +A + +I+ + + DG YG+ EG E+ + + + V Sbjct: 320 WHLHAFHIWNVIATDGGAYQM--LDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETV 377 Query: 360 KHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKE 419 K + G + + + Y +AR + L + + A Q DV++ PT P A L + Sbjct: 378 KLVALTGHHG-ITTLGGASYGKARNLVPLARAAYDTALRQ-FDVLVMPTLPYVASELPAK 435 Query: 420 ENNSGSM--GHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVG 477 + + + + T ++ G P++SVPA L +P+G+ + G+ F + T+ VG Sbjct: 436 DVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVN-GLPVGMMITGRHFDDATVLRVG 494 Query: 478 QIIEKEAGYFRP 489 + EK G F Sbjct: 495 RAFEKLRGAFPT 506 >2wj1_A Fatty-acid amide hydrolase 1; monotopic membrane protein, golgi apparatus, endoplasmic reticulum, membrane, transmembrane, phosphoprotein; HET: S99; 1.84A {Rattus norvegicus} PDB: 2wj2_A* 2wap_A* 1mt5_A* 2vya_A* Length = 573 Score = 264 bits (674), Expect = 4e-71 Identities = 97/530 (18%), Positives = 192/530 (36%), Gaps = 64/530 (12%) Query: 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD 60 L + + + +L+S ++S + +Y+ N N + ++ Sbjct: 65 SEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPR 124 Query: 61 KRIINGDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLG 120 + + L G+P+ +K+CF+ KG + + +G + V Q L GAV Sbjct: 125 QGL-------LYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFV 177 Query: 121 KLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDT 180 N+ + +G ++PW+S +PGGSSGG A + +GTD Sbjct: 178 HTNVPQSMFSYDCSNPLFGQTMNPWKSS-----KSPGGSSGGEGALIGSGGSPLGLGTDI 232 Query: 181 GGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPS----LDQAGIITRTVRDSAILLKAIA 236 GGSIR P++F G G+KPT R S+ G+ G + R V A+ LKA+ Sbjct: 233 GGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALL 292 Query: 237 GYDECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAG 296 P+P E + +S + + VG + SP + + + L+ AG Sbjct: 293 CEHLFTLDPTVPPLPFREE-VYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAG 351 Query: 297 AKIVEISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFG 356 ++ + Y A ++S S+ R + + ++ R + Sbjct: 352 HTLIPFLPNNIPY---ALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWF 408 Query: 357 QEVKHRIMIGTYVLSSRCYDSH-------YLRARKIRTLIKRDFTEAFEQ-GVDVILTPT 408 + + ++ + + ++ + + + ++ ++ +DV+LTP Sbjct: 409 KRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPM 468 Query: 409 TPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKK------------ 456 A L +G++ +T+ N PA VP + Sbjct: 469 LGP-ALDLNTPGRATGAVS------YTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYF 521 Query: 457 -----------------MPLGLQLIGQPFREETLFSVGQIIEKEAGYFRP 489 +P+ +Q + P++EE + +E+ + Sbjct: 522 GDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQKQ 571 >2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Score = 226 bits (575), Expect = 1e-59 Identities = 127/483 (26%), Positives = 205/483 (42%), Gaps = 53/483 (10%) Query: 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIING 66 M + E++ L + + + L++ ++ + + NA + + AR A + + G Sbjct: 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQDR-NALAYLDEEAARKEALALTEELRRG 59 Query: 67 DARD-LEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMD 125 R L G+P+ +KD F KG+ T+A + P V + + NM Sbjct: 60 QVRGPLHGLPLTVKDLFPVKGMPTRAGTKAPLPPLPEEARAVRRLREAGALLFAKT-NMH 118 Query: 126 EFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIR 185 E A+G + E + GPV + GGSSGGS+ AVA + AS+GTDTGGSIR Sbjct: 119 EIALGITGENPWTGPVRNAVDPS-----RQAGGSSGGSAVAVALGIGLASLGTDTGGSIR 173 Query: 186 QPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATC 245 PA F G VG KP+YGR S G + + S D AG +TR+VRD+ L + +AG Sbjct: 174 IPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGES------ 227 Query: 246 VNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLP 305 + +Q G+P ++ L + K + + + L A++ E+SLP Sbjct: 228 ----------IPLEGVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLP 277 Query: 306 HTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMI 365 ++ R E I E GF +V+ ++ Sbjct: 278 LEGVYEVYTRLV-------------------RYEAARIHEKALKEHPEGFSPQVREALLA 318 Query: 366 GTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEENNSGS 425 G + D+ R +GVD +L P P A PLG EE S Sbjct: 319 GLALTEKDYRDAVA------EREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELES 372 Query: 426 MGHIYND---VFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEK 482 + + T+ ++ G+P +++P A E MP+GLQ++G + + ++G +E Sbjct: 373 GRKGHREAFITLTLPFSLLGVPTLALPFAKVE-GMPVGLQVVGAYGEDGKVLALGGWLEA 431 Query: 483 EAG 485 G Sbjct: 432 RLG 434 >3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation, plasmid; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Score = 213 bits (542), Expect = 7e-56 Identities = 120/504 (23%), Positives = 204/504 (40%), Gaps = 38/504 (7%) Query: 1 MSELN-FMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEES 59 MS+++ + + + +RS +IS EL+++ I ++ N ++NA I + +KAR +E + Sbjct: 1 MSKVDLWQDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELA 60 Query: 60 DKRIINGDARDLEGIPIGIKDCFA-TKGIHTQACSHIL--DGFRPHYESTVTQKLWDNGA 116 G+P +KD ++G + + G+R +++ Q++ G Sbjct: 61 SGP--------FAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGF 112 Query: 117 VMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASI 176 V+LGK N E + E +G +PW + GGSSGGS AAVA L + Sbjct: 113 VLLGKTNTPEMGNQVTTEPEAWGATRNPWNLG-----RSVGGSSGGSGAAVAAALSPVAH 167 Query: 177 GTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQA---GIITRTVRDSAILLK 233 G D G++R PAS G VG+KPT GR S +++ + ++ A G+ R+VRD A LL Sbjct: 168 GNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLD 227 Query: 234 AIAGYDECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRL--DYLSPTIDKTWQQGISW 291 ++G+ D C Y + + ++ + VG+ + L P + + Sbjct: 228 VVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAA 287 Query: 292 LKDAGAKIVEISLPH--TQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYEN 349 L G + + + L Y I + + R G+ I Sbjct: 288 LAALGHDVNDAYPEALGDRSFLKDYSTICDVAIAREIERN----------GELIGRPLTE 337 Query: 350 TRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTT 409 E+ R T + C D A K+ + + TP Sbjct: 338 DDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILP-TVTRQTPEI 396 Query: 410 PTSAFPLGKEENNSGSM---GHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQ 466 G + S G + FTV N++G PAIS+P + MP+G+Q++ Sbjct: 397 GELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAA 456 Query: 467 PFREETLFSVGQIIEKEAGYFRPH 490 RE+ L V +E + Sbjct: 457 YGREDLLLQVAAQLEGALPWVARR 480 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 56.1 bits (135), Expect = 2e-08 Identities = 95/559 (16%), Positives = 166/559 (29%), Gaps = 215/559 (38%) Query: 2 SELN--FMA-VSESRDRLRSKD--ISAVELVDSYIQAI--ENSNSQMNAYIEVVAQKARA 54 S+L F + E + + D + ELV ++ + S++ + +V+ Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL----NL 86 Query: 55 AAEESDKRIINGD-----ARDLEGIPIGIKDCFATKGI---HTQACSHILDGFRPHYEST 106 E + + G+ A L TK + + A F S Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLV--KTKELIKNYITARIMAKRPFDKKSNS- 143 Query: 107 VTQKLWDNGAVMLGKLNMDEFAM--GSSNETSY----------YGPVISPW--------- 145 L+ AV G + A+ G N Y Y ++ Sbjct: 144 ---ALFR--AVGEGNAQL--VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196 Query: 146 ---RSMDSTDKF----------------TPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQ 186 R+ +K TP S ++ L IG + Q Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTP-DKDYLLSIPISCPL----IG------VIQ 245 Query: 187 PASFTGT---VGIKPTYGR-CSRL--------GIISFAPSLDQAGIITRTVRDS--AILL 232 A + T +G P G S L G+++ A I +S + Sbjct: 246 LAHYVVTAKLLGFTP--GELRSYLKGATGHSQGLVT-A-----VAIAETDSWESFFVSVR 297 Query: 233 KAIA-----GYDEC--DATCVNLPVPDYERALDQSI---QG----M-TV-GIPKEYRLDY 276 KAI G C +LP P L+ S+ +G M ++ + +E ++ Sbjct: 298 KAITVLFFIGV-RCYEAYPNTSLP-PS---ILEDSLENNEGVPSPMLSISNLTQE-QVQ- 350 Query: 277 LSPTIDKTWQQ-------GIS----------------------WLKDAGA-------KI- 299 ++KT IS L+ A A +I Sbjct: 351 --DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408 Query: 300 -----VEIS---LP-----HTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEM 346 ++ S LP H+ +PA +I + +L + + + KD +++ Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLI-----NKDLVKNN-----VSFNAKD-IQI 457 Query: 347 --Y-----ENTRSIGFGQEVKHRI--MIGTYVL----SSRCYDSHYL-----RARKIRTL 388 Y + R + RI I + +++ +H L A + L Sbjct: 458 PVYDTFDGSDLRV--LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL 515 Query: 389 IKR--DFTEAFEQGVDVIL 405 R D T GV VI+ Sbjct: 516 THRNKDGT-----GVRVIV 529 Score = 50.7 bits (121), Expect = 7e-07 Identities = 69/358 (19%), Positives = 104/358 (29%), Gaps = 143/358 (39%) Query: 66 GDARD-LEGIPIGIKDCFATKGIHTQ--------ACSHILDGFRPHYESTVTQKLWDNGA 116 G+ R L+G AT G H+Q A + + F + S A Sbjct: 261 GELRSYLKG---------AT-G-HSQGLVTAVAIAETDSWESF---FVSVRK-------A 299 Query: 117 V-MLGKLNMDEFAMGSSNETSYYGPVISPWRSM--DSTD--KFTPGGS-----SGGSSAA 166 + +L F +G +Y P S S+ DS + + P S S + Sbjct: 300 ITVL-------FFIGVRCYEAY--PNTSLPPSILEDSLENNEGVP--SPMLSISNLTQEQ 348 Query: 167 VAGFL--CAASIGTDTGGSI---RQPASF--TGTVGIKPT---YGRCSRLGIISFAPSLD 216 V ++ + + I + +G P YG L LD Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-----PPQSLYGLNLTLRKAKAPSGLD 403 Query: 217 QAGIITRTVRDSAILLKAIAGYDECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDY 276 Q+ R +P ER L S + + V P + Sbjct: 404 QS----R--------------------------IPFSERKLKFSNRFLPVASP--FHSHL 431 Query: 277 LSPTIDKTWQ----QGISW-----------------LKDAGAKIVE------ISLP-HTQ 308 L P D + +S+ L+ I E I LP + Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491 Query: 309 YAL--PAYYII--SPAEAS--SNL-AR-YDGVRYGLRVEGKDIL--EMYENT-RSIGF 355 A +I+ P AS L R DG G+RV I+ + N GF Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDG--TGVRV----IVAGTLDINPDDDYGF 543 Score = 49.2 bits (117), Expect = 2e-06 Identities = 66/391 (16%), Positives = 103/391 (26%), Gaps = 166/391 (42%) Query: 208 IISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCVNLPVPD------YERALDQSI 261 I + A L T+ + L+K P + + + Sbjct: 101 IHALAAKLL--QENDTTLVKTKELIKNY--ITARIMA--KRPFDKKSNSALFRAVGEGNA 154 Query: 262 QGMTV----GIPKEY------------------------RLDYLS---PTIDKTWQQG-- 288 Q + + G +Y L L +K + QG Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214 Query: 289 -ISWLKDAGAKIVEISLPHTQY------ALP-------AYYII-------SPAEASSNLA 327 + WL++ + P Y + P A+Y++ +P E S L Sbjct: 215 ILEWLENP------SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268 Query: 328 RYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARK-IR 386 G T G Q ++ + + ++S ++ RK I Sbjct: 269 ---GA-----------------T---GHSQG----LVTAVAIAETDSWESFFVSVRKAIT 301 Query: 387 TLIKRDFTEAFEQGVDVILTPTTPTSAFPLG----KEENNSGS---MGHIYN------DV 433 L F GV P ++ P ENN G M I N Sbjct: 302 VL--------FFIGVRCYEA--YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351 Query: 434 FTVAVNMAGLP-----AIS--------V----PAALC-------EKKMPLGL-Q------ 462 + N + LP IS V P +L + K P GL Q Sbjct: 352 YVNKTN-SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410 Query: 463 ----------L-IGQPFREETLFSVGQIIEK 482 L + PF L +I K Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINK 441 Score = 38.0 bits (88), Expect = 0.005 Identities = 41/242 (16%), Positives = 66/242 (27%), Gaps = 88/242 (36%) Query: 300 VEISL--PHTQYA----LPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSI 353 +E L P + L + E + A D E E+ + + Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD--------EPTTPAELV--GKFL 65 Query: 354 GFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDV-----ILTPT 408 G+ +SS S + ++ L +F + +G D+ L Sbjct: 66 GY--------------VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111 Query: 409 TPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAG--LPAISVPA---ALCEKKMPL---- 459 T L K + + + T A MA S A A+ E L Sbjct: 112 NDT---TLVKTKE-------LIKNYIT-ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160 Query: 460 GLQLIGQP-----FRE-ETLFS-----VGQIIEK-------------EAGYFRPH----- 490 G GQ F E L+ VG +I+ +A Sbjct: 161 G----GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216 Query: 491 KW 492 +W Sbjct: 217 EW 218 >2o3i_A Hypothetical protein; NESG, CVR68, Q7NTB2, structural genomics, PSI-2, protein structure initiative; 2.30A {Chromobacterium violaceum} SCOP: e.73.1.1 Length = 405 Score = 29.9 bits (67), Expect = 1.3 Identities = 35/219 (15%), Positives = 72/219 (32%), Gaps = 31/219 (14%) Query: 274 LDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISPAEASSNLARYDGVR 333 L P D ++ IS + + + + + Q+ A +++SPA+ L + Sbjct: 168 LGVRMPPPDGQRREDISTVVEQMLRPILTNPQFGQFGGLAMWMMSPAQLGGALPVRGTLS 227 Query: 334 YGLRVEGKDILEMYENTRS-----IGFGQEVKHRIMIGTYVLSS--RCYDSHYLRA---- 382 L++ G+ + + T + ++K +++ G L+S + Sbjct: 228 RALKL-GRALQDGKVKTAEAMLDFLRRELDIKGKLLFGPATLASPEVSTAGGFDLGKVVL 286 Query: 383 ----RKIRTLIKRDFTEAFEQGVDVILTPTTP--------TSAFPLGKEENNSGSMGHIY 430 R+ L + + A++ + L T P + + SG+ + Sbjct: 287 EDGERRCTVLYQNESLLAWDSALSHPLA-TAPDAISYFVEGEGQHVFSNGDLSGNDHGLD 345 Query: 431 NDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFR 469 V + LPA A L E LQ Sbjct: 346 PSVRGRKAAVIALPA---AAPLSEGL---ILQSFADELA 378 >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 665 Score = 29.5 bits (66), Expect = 1.9 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 12/61 (19%) Query: 377 SHYLRARKIRTLIKRDFTEAFEQGVDVILTP----TTPTSAFPLGKEENNSGSMGHIYND 432 SH + +I + +DF +A+ + D+I + P GK H ND Sbjct: 18 SHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKT--------HPVND 69 Query: 433 V 433 Sbjct: 70 T 70 >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 685 Score = 29.2 bits (65), Expect = 2.0 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 12/61 (19%) Query: 377 SHYLRARKIRTLIKRDFTEAFEQGVDVILTP----TTPTSAFPLGKEENNSGSMGHIYND 432 SH + +I + +DF +A+ + D+I + P GK H ND Sbjct: 18 SHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKT--------HPVND 69 Query: 433 V 433 Sbjct: 70 T 70 >2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405 Score = 29.1 bits (64), Expect = 2.6 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%) Query: 383 RKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEEN 421 K++T+IK A E G +++ T T F E Sbjct: 99 NKVKTMIK----AAAEAGCNIVCTQEAWTMPFAFCTREK 133 >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 648 Score = 28.4 bits (63), Expect = 3.8 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Query: 377 SHYLRARKIRTLIKRDFTEAFEQGVDVILTP----TTPTSAFPLGK 418 SH + +I + +DF +A+ + D+I + P GK Sbjct: 18 SHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGK 63 >2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor} Length = 340 Score = 28.1 bits (61), Expect = 4.3 Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 8/127 (6%) Query: 282 DKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGK 341 D ++ +D G +E++ + + P+ S D +YGL+ Sbjct: 14 DLPLEEVCRLARDFGYDGLELACWGDHFEVDKAL-ADPSYVDSRHQLLD--KYGLK---- 66 Query: 342 DILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGV 401 + + + ++ IK A GV Sbjct: 67 -CWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGV 125 Query: 402 DVILTPT 408 D ++ T Sbjct: 126 DTVIGFT 132 >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Length = 454 Score = 27.7 bits (61), Expect = 6.8 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 8/41 (19%) Query: 455 KKMPLGLQLIGQPFREET--------LFSVGQIIEKEAGYF 487 +K+P GL IG F + + VG+ E +F Sbjct: 160 RKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWF 200 >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} Length = 535 Score = 27.5 bits (61), Expect = 7.0 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 18/68 (26%) Query: 253 YERALDQSIQG---MTVG------IPKEYRLDYLSPTID---------KTWQQGISWLKD 294 YER +D ++ +T G I KE YL T+ K + S + + Sbjct: 76 YERFMDVNMTKYNNITAGKVYFEVIKKEREGKYLGQTVQIIPHVTDQIKDMIRYASKINN 135 Query: 295 AGAKIVEI 302 A +VEI Sbjct: 136 AEITLVEI 143 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.134 0.397 Gapped Lambda K H 0.267 0.0614 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,269,428 Number of extensions: 202991 Number of successful extensions: 515 Number of sequences better than 10.0: 1 Number of HSP's gapped: 454 Number of HSP's successfully gapped: 25 Length of query: 493 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 397 Effective length of database: 3,365,806 Effective search space: 1336224982 Effective search space used: 1336224982 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (26.8 bits)