RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA
amidotransferase subunit A [Candidatus Liberibacter asiaticus str.
psy62]
(493 letters)
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 449 bits (1157), Expect = e-127
Identities = 219/485 (45%), Positives = 312/485 (64%), Gaps = 15/485 (3%)
Query: 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIING 66
++SE R+ L+ ++S E+V+S+ + ++ AYI + KA AE +R
Sbjct: 5 KSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER---- 60
Query: 67 DARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDE 126
L GIPI +KD +G T S IL+ F Y++TV ++L GA+++GK N+DE
Sbjct: 61 -ELPLFGIPIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDE 119
Query: 127 FAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQ 186
FAMGSS E S + P +PW + PGGSSGGS+A+VA S+G+DTGGSIRQ
Sbjct: 120 FAMGSSTEYSAFFPTKNPWD-----LERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQ 174
Query: 187 PASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCV 246
PASF G +GIKPTYGR SR G+++FA SLDQ G+ R D A++L+ I+G+DE D+T
Sbjct: 175 PASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSA 234
Query: 247 NLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPH 306
+PVP++ + + ++G+ +G+PKE+ L P + + ++ I L+ G +I E+SLPH
Sbjct: 235 KVPVPEWSEEVKKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELEKEGFEIKEVSLPH 294
Query: 307 TQYALPAYYIISPAEASSNLARYDGVRYGLRV-EGKDILEMYENTRSIGFGQEVKHRIMI 365
+Y++P YYII+P+EASSNLARYDGVRYG R E KDI EMY TR GFG EVK RIM+
Sbjct: 295 VKYSIPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIML 354
Query: 366 GTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEENNSGS 425
GT+ LS+ YD++YL+A+K+R LI DF +AFE+ VDVI +PTTPT F G+ N
Sbjct: 355 GTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEE-VDVIASPTTPTLPFKFGERLENPIE 413
Query: 426 MGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEKEAG 485
M +D+ TV N+AGLPAIS+P A + +P+G QLIG+ + E TL + + E++
Sbjct: 414 M--YLSDILTVPANLAGLPAISIPIAWKD-GLPVGGQLIGKHWDETTLLQISYLWEQKFK 470
Query: 486 YFRPH 490
++
Sbjct: 471 HYEKI 475
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 449 bits (1156), Expect = e-127
Identities = 190/482 (39%), Positives = 287/482 (59%), Gaps = 20/482 (4%)
Query: 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIING 66
M E R R+ ++S +E+ +Y++ ++ + + A++ + + AE D
Sbjct: 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNER-LLEEAEAVDPG---- 55
Query: 67 DARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDE 126
L G+ + +KD AT+G+ T A S +L+ F P YE+T +L GA++LGK N+DE
Sbjct: 56 --LPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDE 113
Query: 127 FAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQ 186
F MGSS E S + P +P+ PGGSSGGS+AA+A L ++G+DTGGS+RQ
Sbjct: 114 FGMGSSTEHSAFFPTKNPFD-----PDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQ 168
Query: 187 PASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCV 246
PA+F G G+KPTYGR SR G+I++A SLDQ G + R+VRD A+L+ A AG D DAT +
Sbjct: 169 PAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSL 228
Query: 247 NLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPH 306
+LP P ++ AL+ + + +G+ +E L SP +++ ++ + ++ G + E+S P
Sbjct: 229 DLP-PRFQEALEGPLPPLRLGVVREA-LAGNSPGVERALEEALKVFRELGLSVREVSWPS 286
Query: 307 TQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIG 366
AL AYYI++PAEASSNLARYDG YG R G+++ M E TR++ FG EVK R+++G
Sbjct: 287 LPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRAL-FGLEVKRRVLVG 345
Query: 367 TYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEENNSGSM 426
T+VLSS Y+++Y RA+ R +K + F + VD++L PTTP AFP G + +
Sbjct: 346 TFVLSSGYYEAYYGRAQAFRRRLKAEAQALFRE-VDLLLLPTTPHPAFPFGARRD---PL 401
Query: 427 GHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEKEAGY 486
D++TV N+ GLPA+S PA E +P+GLQL+ +E L E+
Sbjct: 402 AMYREDLYTVGANLTGLPALSFPAGF-EGHLPVGLQLLAPWGEDERLLRAALAFEEATAR 460
Query: 487 FR 488
Sbjct: 461 AH 462
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide- binding; 1.90A
{Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A
2g5i_A* 2f2a_A
Length = 485
Score = 435 bits (1118), Expect = e-122
Identities = 216/492 (43%), Positives = 315/492 (64%), Gaps = 12/492 (2%)
Query: 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD 60
MS + + +V ++ K I ++V AIE ++ + +++ + + A A+E D
Sbjct: 1 MS-IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELD 59
Query: 61 KRIINGDARD-LEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVML 119
+ L GIP+GIKD T G+ T S +L+GF P YESTV +KL AV++
Sbjct: 60 ELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLI 119
Query: 120 GKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTD 179
GKLNMDEFAMG S ETSY+ ++P+ K PGGSSGGS+AAVA L S+G+D
Sbjct: 120 GKLNMDEFAMGGSTETSYFKKTVNPFD-----HKAVPGGSSGGSAAAVAAGLVPLSLGSD 174
Query: 180 TGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYD 239
TGGSIRQPA++ G VG+KPTYGR SR G+++FA SLDQ G +TR V+D+AI+L+AI+G D
Sbjct: 175 TGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGAD 234
Query: 240 ECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKI 299
D+T + D+ + + I+G+ V +PKEY + ++ + + Q + LK GA +
Sbjct: 235 VNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVV 294
Query: 300 VEISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRV-EGKDILEMYENTRSIGFGQE 358
E+SLP+T++ +P+YY+I+ +EASSNL+R+DG+RYG E + E+Y+ +RS GFG+E
Sbjct: 295 EEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKE 354
Query: 359 VKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGK 418
VK RI +GT+ LSS YD++Y +++K+RTLIK DF + FE DV++ PT PT+AF LG+
Sbjct: 355 VKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFEN-YDVVVGPTAPTTAFNLGE 413
Query: 419 EENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQ 478
E ++ +M ND+ T VN+AGLP ISVP P+GLQ IG+PF E+TL+ V
Sbjct: 414 EIDDPLTMYA--NDLLTTPVNLAGLPGISVPCGQ-SNGRPIGLQFIGKPFDEKTLYRVAY 470
Query: 479 IIEKEAGYFRPH 490
E + +
Sbjct: 471 QYETQYNLHDVY 482
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1
Length = 476
Score = 386 bits (991), Expect = e-108
Identities = 193/492 (39%), Positives = 300/492 (60%), Gaps = 24/492 (4%)
Query: 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD 60
M +L+F ++ + L+ + +L ++ I+ + + A+I V +
Sbjct: 2 MIDLDFRKLT-IEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKK---- 56
Query: 61 KRIINGDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLG 120
GIP+ IKD T G+ T S IL+ + +++TV +K+ + G V++G
Sbjct: 57 --------GKFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVG 108
Query: 121 KLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDT 180
K N+DEFAMGSS E S + P +PW PGGSSGGS+AAV+ + A++G+DT
Sbjct: 109 KANLDEFAMGSSTERSAFFPTRNPWDLE-----RVPGGSSGGSAAAVSAGMVVAALGSDT 163
Query: 181 GGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDE 240
GGS+RQPAS G VG KPTYG SR G+++FA SLDQ G IT+TVRD+AIL++ I+G DE
Sbjct: 164 GGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDE 223
Query: 241 CDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIV 300
DAT VN V +++ + GM +P+E + + + +++ + L+ GAK+
Sbjct: 224 NDATTVNRKVDFL-SEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVE 282
Query: 301 EISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVK 360
+ +PH +Y++ YY+I+PAEASSNLAR+DGV+YGLR++ K + EMY TR++GFG+EV+
Sbjct: 283 RVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVR 342
Query: 361 HRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEE 420
RIMIGT+ LS+ Y++++ +A K+R I + E Q D ILTPT+P +AF +G+ +
Sbjct: 343 RRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQ-YDAILTPTSPVTAFKIGEIK 401
Query: 421 NNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQII 480
+ + + D+FT+ N+AGLPAISVP +P+G+Q+IG+ F + +F + + I
Sbjct: 402 D---PLTYYLMDIFTIPANLAGLPAISVPFGF-SNNLPVGVQVIGRRFADGKVFRIARAI 457
Query: 481 EKEAGYFRPHKW 492
EK + Y +
Sbjct: 458 EKNSPYNENGMF 469
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 331 bits (848), Expect = 3e-91
Identities = 147/510 (28%), Positives = 235/510 (46%), Gaps = 44/510 (8%)
Query: 3 ELNFMAVSESRDRLRSKDISAVELVDSY---IQAIENSNSQMNAYIEVVAQKARAAAEES 59
V++ + R+ + ++ + L +Y I A++ + ++ A IE+ A A E
Sbjct: 7 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAER 65
Query: 60 DKRIINGDARD-LEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVM 118
D+ +G R L GIP+ +KD + T A S L GFRP ++ + ++L D GAV+
Sbjct: 66 DRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPD-DAYLVRRLRDAGAVV 124
Query: 119 LGKLNMDEFAMGS-----SNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCA 173
LGK N+ E+A S ++ G +P+R +P GSS GS+ AVA L +
Sbjct: 125 LGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS-----HSPCGSSSGSAVAVAANLAS 179
Query: 174 ASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLK 233
+IGT+T GSI PA+ G VG+KPT G SR GII + S D AG + R+V D+A +L
Sbjct: 180 VAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT 239
Query: 234 AIAGYDECDATCVNLP---VPDYERALD-QSIQGMTVGIPKEYRLDYLSPTIDKTWQQGI 289
AIAG D+ D +P V DY LD Q ++G +G+ + L Y + +Q
Sbjct: 240 AIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKY--RGMPPLIEQAA 297
Query: 290 SWLKDAGAKIVEISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILE---M 346
+ L+ AGA +V + LP+ A + E + L RY D++
Sbjct: 298 TELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQA 357
Query: 347 YENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKR----DFTEAFEQGVD 402
+ FGQE ++ ++ D Y+RAR + D A Q +D
Sbjct: 358 HSKQELGLFGQE-----LLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQ-LD 411
Query: 403 VILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQ 462
++ PTT + + ++ G A +AG P+++VP + +P+GL
Sbjct: 412 ALVAPTTGVAWPIRSEGDDFPGES--------YSAAAVAGYPSLTVPMGQID-GLPVGLL 462
Query: 463 LIGQPFREETLFSVGQIIEKEAGYFRPHKW 492
+G + E L + E+ RP +
Sbjct: 463 FMGTAWSEPKLIEMAYAYEQRTRARRPPHF 492
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 285 bits (729), Expect = 2e-77
Identities = 106/480 (22%), Positives = 189/480 (39%), Gaps = 71/480 (14%)
Query: 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIING 66
+++++ + R+ + ++S + AIE +++A++ + ARA A
Sbjct: 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRH-DKSARAQA---------- 50
Query: 67 DARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDE 126
+ L GI +GIKD T + T+ S I G++P ++ V L GA ++GK
Sbjct: 51 -SGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTA 109
Query: 127 FAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQ 186
FA T + S GG+S GS+AAV + ++GT TGGS+ +
Sbjct: 110 FASRDPTATLNP---HNTGHSP--------GGASSGSAAAVGAGMIPLALGTQTGGSVIR 158
Query: 187 PASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCV 246
PA++ GT IKP++ +G+ ++ +LD G+ D A L A+ G E
Sbjct: 159 PAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIV- 217
Query: 247 NLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPH 306
+ +G+ ++ + P ++ Q I + AGA + I LP
Sbjct: 218 -------------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPE 264
Query: 307 TQY-ALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMI 365
+ A + II EA LA + + ++
Sbjct: 265 AVHEAWRIHPIIQDFEAHRALAWEFSEHH-----------------------DEIAPMLR 301
Query: 366 GTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEENNSGS 425
+ + Y AR+I +R+ E FE GVDV+LT + P +A
Sbjct: 302 ASLDATVGLTPKEYDEARRIGRRGRRELGEVFE-GVDVLLTYSAPGTAPAKALASTG--- 357
Query: 426 MGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEKEAG 485
+ + + G P ++VP +P+G+Q+I + + + +E
Sbjct: 358 -----DPRYNRLWTLMGNPCVNVPVLK-VGGLPIGVQVIARFGNDAHALATAWFLEDALA 411
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 272 bits (696), Expect = 1e-73
Identities = 133/492 (27%), Positives = 215/492 (43%), Gaps = 20/492 (4%)
Query: 8 AVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGD 67
L + + ++VD + + A + +A I
Sbjct: 25 TARLEWPALIDGALGSYDVVDQLYADEATPPTTSREHAVPSASENPLSAWYVTTSIPPTS 84
Query: 68 ARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEF 127
L G + IKD G+ S ++GF P ++TV +L GA + GK ++
Sbjct: 85 DGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDL 144
Query: 128 AMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQP 187
S+ T GPV +PW + GGSSGGS+A VA +IG D GGSIR P
Sbjct: 145 CFSGSSFTPASGPVRNPWD-----RQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIP 199
Query: 188 ASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCVN 247
A+F G VG KPT+G G ++D G ITRTV D+A++L IAG D D +
Sbjct: 200 AAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQAD 259
Query: 248 -LPVPDYERALDQSIQGMTVGIPKEYRLDYLS-PTIDKTWQQGISWLKDAGAKIVEISLP 305
+ DY LD + G+ +GI +E +S P +D + L + G + E+++P
Sbjct: 260 SVEAGDYLSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVNIP 319
Query: 306 HTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYEN------TRSIGFGQEV 359
+A + +I+ + + DG YG+ EG E+ + + + V
Sbjct: 320 WHLHAFHIWNVIATDGGAYQM--LDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETV 377
Query: 360 KHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKE 419
K + G + + + Y +AR + L + + A Q DV++ PT P A L +
Sbjct: 378 KLVALTGHHG-ITTLGGASYGKARNLVPLARAAYDTALRQ-FDVLVMPTLPYVASELPAK 435
Query: 420 ENNSGSM--GHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVG 477
+ + + + T ++ G P++SVPA L +P+G+ + G+ F + T+ VG
Sbjct: 436 DVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVN-GLPVGMMITGRHFDDATVLRVG 494
Query: 478 QIIEKEAGYFRP 489
+ EK G F
Sbjct: 495 RAFEKLRGAFPT 506
>2wj1_A Fatty-acid amide hydrolase 1; monotopic membrane protein, golgi
apparatus, endoplasmic reticulum, membrane,
transmembrane, phosphoprotein; HET: S99; 1.84A {Rattus
norvegicus} PDB: 2wj2_A* 2wap_A* 1mt5_A* 2vya_A*
Length = 573
Score = 264 bits (674), Expect = 4e-71
Identities = 97/530 (18%), Positives = 192/530 (36%), Gaps = 64/530 (12%)
Query: 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD 60
L + + + +L+S ++S + +Y+ N N + ++
Sbjct: 65 SEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPR 124
Query: 61 KRIINGDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLG 120
+ + L G+P+ +K+CF+ KG + + +G + V Q L GAV
Sbjct: 125 QGL-------LYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFV 177
Query: 121 KLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDT 180
N+ + +G ++PW+S +PGGSSGG A + +GTD
Sbjct: 178 HTNVPQSMFSYDCSNPLFGQTMNPWKSS-----KSPGGSSGGEGALIGSGGSPLGLGTDI 232
Query: 181 GGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPS----LDQAGIITRTVRDSAILLKAIA 236
GGSIR P++F G G+KPT R S+ G+ G + R V A+ LKA+
Sbjct: 233 GGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALL 292
Query: 237 GYDECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAG 296
P+P E + +S + + VG + SP + + + L+ AG
Sbjct: 293 CEHLFTLDPTVPPLPFREE-VYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAG 351
Query: 297 AKIVEISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFG 356
++ + Y A ++S S+ R + + ++ R +
Sbjct: 352 HTLIPFLPNNIPY---ALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWF 408
Query: 357 QEVKHRIMIGTYVLSSRCYDSH-------YLRARKIRTLIKRDFTEAFEQ-GVDVILTPT 408
+ + ++ + + ++ + + + ++ ++ +DV+LTP
Sbjct: 409 KRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPM 468
Query: 409 TPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKK------------ 456
A L +G++ +T+ N PA VP +
Sbjct: 469 LGP-ALDLNTPGRATGAVS------YTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYF 521
Query: 457 -----------------MPLGLQLIGQPFREETLFSVGQIIEKEAGYFRP 489
+P+ +Q + P++EE + +E+ +
Sbjct: 522 GDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQKQ 571
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 226 bits (575), Expect = 1e-59
Identities = 127/483 (26%), Positives = 205/483 (42%), Gaps = 53/483 (10%)
Query: 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIING 66
M + E++ L + + + L++ ++ + + NA + + AR A + + G
Sbjct: 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQDR-NALAYLDEEAARKEALALTEELRRG 59
Query: 67 DARD-LEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMD 125
R L G+P+ +KD F KG+ T+A + P V + + NM
Sbjct: 60 QVRGPLHGLPLTVKDLFPVKGMPTRAGTKAPLPPLPEEARAVRRLREAGALLFAKT-NMH 118
Query: 126 EFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIR 185
E A+G + E + GPV + GGSSGGS+ AVA + AS+GTDTGGSIR
Sbjct: 119 EIALGITGENPWTGPVRNAVDPS-----RQAGGSSGGSAVAVALGIGLASLGTDTGGSIR 173
Query: 186 QPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATC 245
PA F G VG KP+YGR S G + + S D AG +TR+VRD+ L + +AG
Sbjct: 174 IPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGES------ 227
Query: 246 VNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLP 305
+ +Q G+P ++ L + K + + + L A++ E+SLP
Sbjct: 228 ----------IPLEGVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLP 277
Query: 306 HTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMI 365
++ R E I E GF +V+ ++
Sbjct: 278 LEGVYEVYTRLV-------------------RYEAARIHEKALKEHPEGFSPQVREALLA 318
Query: 366 GTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEENNSGS 425
G + D+ R +GVD +L P P A PLG EE S
Sbjct: 319 GLALTEKDYRDAVA------EREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELES 372
Query: 426 MGHIYND---VFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEK 482
+ + T+ ++ G+P +++P A E MP+GLQ++G + + ++G +E
Sbjct: 373 GRKGHREAFITLTLPFSLLGVPTLALPFAKVE-GMPVGLQVVGAYGEDGKVLALGGWLEA 431
Query: 483 EAG 485
G
Sbjct: 432 RLG 434
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation, plasmid; 1.80A {Arthrobacter SP} PDB:
3a2p_A
Length = 493
Score = 213 bits (542), Expect = 7e-56
Identities = 120/504 (23%), Positives = 204/504 (40%), Gaps = 38/504 (7%)
Query: 1 MSELN-FMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEES 59
MS+++ + + + +RS +IS EL+++ I ++ N ++NA I + +KAR +E +
Sbjct: 1 MSKVDLWQDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELA 60
Query: 60 DKRIINGDARDLEGIPIGIKDCFA-TKGIHTQACSHIL--DGFRPHYESTVTQKLWDNGA 116
G+P +KD ++G + + G+R +++ Q++ G
Sbjct: 61 SGP--------FAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGF 112
Query: 117 VMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASI 176
V+LGK N E + E +G +PW + GGSSGGS AAVA L +
Sbjct: 113 VLLGKTNTPEMGNQVTTEPEAWGATRNPWNLG-----RSVGGSSGGSGAAVAAALSPVAH 167
Query: 177 GTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQA---GIITRTVRDSAILLK 233
G D G++R PAS G VG+KPT GR S +++ + ++ A G+ R+VRD A LL
Sbjct: 168 GNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLD 227
Query: 234 AIAGYDECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRL--DYLSPTIDKTWQQGISW 291
++G+ D C Y + + ++ + VG+ + L P + +
Sbjct: 228 VVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAA 287
Query: 292 LKDAGAKIVEISLPH--TQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYEN 349
L G + + + L Y I + + R G+ I
Sbjct: 288 LAALGHDVNDAYPEALGDRSFLKDYSTICDVAIAREIERN----------GELIGRPLTE 337
Query: 350 TRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTT 409
E+ R T + C D A K+ + + TP
Sbjct: 338 DDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILP-TVTRQTPEI 396
Query: 410 PTSAFPLGKEENNSGSM---GHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQ 466
G + S G + FTV N++G PAIS+P + MP+G+Q++
Sbjct: 397 GELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAA 456
Query: 467 PFREETLFSVGQIIEKEAGYFRPH 490
RE+ L V +E +
Sbjct: 457 YGREDLLLQVAAQLEGALPWVARR 480
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 56.1 bits (135), Expect = 2e-08
Identities = 95/559 (16%), Positives = 166/559 (29%), Gaps = 215/559 (38%)
Query: 2 SELN--FMA-VSESRDRLRSKD--ISAVELVDSYIQAI--ENSNSQMNAYIEVVAQKARA 54
S+L F + E + + D + ELV ++ + S++ + +V+
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL----NL 86
Query: 55 AAEESDKRIINGD-----ARDLEGIPIGIKDCFATKGI---HTQACSHILDGFRPHYEST 106
E + + G+ A L TK + + A F S
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLV--KTKELIKNYITARIMAKRPFDKKSNS- 143
Query: 107 VTQKLWDNGAVMLGKLNMDEFAM--GSSNETSY----------YGPVISPW--------- 145
L+ AV G + A+ G N Y Y ++
Sbjct: 144 ---ALFR--AVGEGNAQL--VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 146 ---RSMDSTDKF----------------TPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQ 186
R+ +K TP S ++ L IG + Q
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTP-DKDYLLSIPISCPL----IG------VIQ 245
Query: 187 PASFTGT---VGIKPTYGR-CSRL--------GIISFAPSLDQAGIITRTVRDS--AILL 232
A + T +G P G S L G+++ A I +S +
Sbjct: 246 LAHYVVTAKLLGFTP--GELRSYLKGATGHSQGLVT-A-----VAIAETDSWESFFVSVR 297
Query: 233 KAIA-----GYDEC--DATCVNLPVPDYERALDQSI---QG----M-TV-GIPKEYRLDY 276
KAI G C +LP P L+ S+ +G M ++ + +E ++
Sbjct: 298 KAITVLFFIGV-RCYEAYPNTSLP-PS---ILEDSLENNEGVPSPMLSISNLTQE-QVQ- 350
Query: 277 LSPTIDKTWQQ-------GIS----------------------WLKDAGA-------KI- 299
++KT IS L+ A A +I
Sbjct: 351 --DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 300 -----VEIS---LP-----HTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEM 346
++ S LP H+ +PA +I + +L + + + KD +++
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLI-----NKDLVKNN-----VSFNAKD-IQI 457
Query: 347 --Y-----ENTRSIGFGQEVKHRI--MIGTYVL----SSRCYDSHYL-----RARKIRTL 388
Y + R + RI I + +++ +H L A + L
Sbjct: 458 PVYDTFDGSDLRV--LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL 515
Query: 389 IKR--DFTEAFEQGVDVIL 405
R D T GV VI+
Sbjct: 516 THRNKDGT-----GVRVIV 529
Score = 50.7 bits (121), Expect = 7e-07
Identities = 69/358 (19%), Positives = 104/358 (29%), Gaps = 143/358 (39%)
Query: 66 GDARD-LEGIPIGIKDCFATKGIHTQ--------ACSHILDGFRPHYESTVTQKLWDNGA 116
G+ R L+G AT G H+Q A + + F + S A
Sbjct: 261 GELRSYLKG---------AT-G-HSQGLVTAVAIAETDSWESF---FVSVRK-------A 299
Query: 117 V-MLGKLNMDEFAMGSSNETSYYGPVISPWRSM--DSTD--KFTPGGS-----SGGSSAA 166
+ +L F +G +Y P S S+ DS + + P S S +
Sbjct: 300 ITVL-------FFIGVRCYEAY--PNTSLPPSILEDSLENNEGVP--SPMLSISNLTQEQ 348
Query: 167 VAGFL--CAASIGTDTGGSI---RQPASF--TGTVGIKPT---YGRCSRLGIISFAPSLD 216
V ++ + + I + +G P YG L LD
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-----PPQSLYGLNLTLRKAKAPSGLD 403
Query: 217 QAGIITRTVRDSAILLKAIAGYDECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDY 276
Q+ R +P ER L S + + V P +
Sbjct: 404 QS----R--------------------------IPFSERKLKFSNRFLPVASP--FHSHL 431
Query: 277 LSPTIDKTWQ----QGISW-----------------LKDAGAKIVE------ISLP-HTQ 308
L P D + +S+ L+ I E I LP +
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 309 YAL--PAYYII--SPAEAS--SNL-AR-YDGVRYGLRVEGKDIL--EMYENT-RSIGF 355
A +I+ P AS L R DG G+RV I+ + N GF
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDG--TGVRV----IVAGTLDINPDDDYGF 543
Score = 49.2 bits (117), Expect = 2e-06
Identities = 66/391 (16%), Positives = 103/391 (26%), Gaps = 166/391 (42%)
Query: 208 IISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCVNLPVPD------YERALDQSI 261
I + A L T+ + L+K P + + +
Sbjct: 101 IHALAAKLL--QENDTTLVKTKELIKNY--ITARIMA--KRPFDKKSNSALFRAVGEGNA 154
Query: 262 QGMTV----GIPKEY------------------------RLDYLS---PTIDKTWQQG-- 288
Q + + G +Y L L +K + QG
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 289 -ISWLKDAGAKIVEISLPHTQY------ALP-------AYYII-------SPAEASSNLA 327
+ WL++ + P Y + P A+Y++ +P E S L
Sbjct: 215 ILEWLENP------SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 328 RYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARK-IR 386
G T G Q ++ + + ++S ++ RK I
Sbjct: 269 ---GA-----------------T---GHSQG----LVTAVAIAETDSWESFFVSVRKAIT 301
Query: 387 TLIKRDFTEAFEQGVDVILTPTTPTSAFPLG----KEENNSGS---MGHIYN------DV 433
L F GV P ++ P ENN G M I N
Sbjct: 302 VL--------FFIGVRCYEA--YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 434 FTVAVNMAGLP-----AIS--------V----PAALC-------EKKMPLGL-Q------ 462
+ N + LP IS V P +L + K P GL Q
Sbjct: 352 YVNKTN-SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 463 ----------L-IGQPFREETLFSVGQIIEK 482
L + PF L +I K
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINK 441
Score = 38.0 bits (88), Expect = 0.005
Identities = 41/242 (16%), Positives = 66/242 (27%), Gaps = 88/242 (36%)
Query: 300 VEISL--PHTQYA----LPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSI 353
+E L P + L + E + A D E E+ + +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD--------EPTTPAELV--GKFL 65
Query: 354 GFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDV-----ILTPT 408
G+ +SS S + ++ L +F + +G D+ L
Sbjct: 66 GY--------------VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 409 TPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAG--LPAISVPA---ALCEKKMPL---- 459
T L K + + + T A MA S A A+ E L
Sbjct: 112 NDT---TLVKTKE-------LIKNYIT-ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 460 GLQLIGQP-----FRE-ETLFS-----VGQIIEK-------------EAGYFRPH----- 490
G GQ F E L+ VG +I+ +A
Sbjct: 161 G----GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 491 KW 492
+W
Sbjct: 217 EW 218
>2o3i_A Hypothetical protein; NESG, CVR68, Q7NTB2, structural genomics,
PSI-2, protein structure initiative; 2.30A
{Chromobacterium violaceum} SCOP: e.73.1.1
Length = 405
Score = 29.9 bits (67), Expect = 1.3
Identities = 35/219 (15%), Positives = 72/219 (32%), Gaps = 31/219 (14%)
Query: 274 LDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISPAEASSNLARYDGVR 333
L P D ++ IS + + + + + Q+ A +++SPA+ L +
Sbjct: 168 LGVRMPPPDGQRREDISTVVEQMLRPILTNPQFGQFGGLAMWMMSPAQLGGALPVRGTLS 227
Query: 334 YGLRVEGKDILEMYENTRS-----IGFGQEVKHRIMIGTYVLSS--RCYDSHYLRA---- 382
L++ G+ + + T + ++K +++ G L+S +
Sbjct: 228 RALKL-GRALQDGKVKTAEAMLDFLRRELDIKGKLLFGPATLASPEVSTAGGFDLGKVVL 286
Query: 383 ----RKIRTLIKRDFTEAFEQGVDVILTPTTP--------TSAFPLGKEENNSGSMGHIY 430
R+ L + + A++ + L T P + + SG+ +
Sbjct: 287 EDGERRCTVLYQNESLLAWDSALSHPLA-TAPDAISYFVEGEGQHVFSNGDLSGNDHGLD 345
Query: 431 NDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFR 469
V + LPA A L E LQ
Sbjct: 346 PSVRGRKAAVIALPA---AAPLSEGL---ILQSFADELA 378
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 665
Score = 29.5 bits (66), Expect = 1.9
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 377 SHYLRARKIRTLIKRDFTEAFEQGVDVILTP----TTPTSAFPLGKEENNSGSMGHIYND 432
SH + +I + +DF +A+ + D+I + P GK H ND
Sbjct: 18 SHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKT--------HPVND 69
Query: 433 V 433
Sbjct: 70 T 70
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 685
Score = 29.2 bits (65), Expect = 2.0
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 377 SHYLRARKIRTLIKRDFTEAFEQGVDVILTP----TTPTSAFPLGKEENNSGSMGHIYND 432
SH + +I + +DF +A+ + D+I + P GK H ND
Sbjct: 18 SHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKT--------HPVND 69
Query: 433 V 433
Sbjct: 70 T 70
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Length = 405
Score = 29.1 bits (64), Expect = 2.6
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 383 RKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEEN 421
K++T+IK A E G +++ T T F E
Sbjct: 99 NKVKTMIK----AAAEAGCNIVCTQEAWTMPFAFCTREK 133
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 648
Score = 28.4 bits (63), Expect = 3.8
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 377 SHYLRARKIRTLIKRDFTEAFEQGVDVILTP----TTPTSAFPLGK 418
SH + +I + +DF +A+ + D+I + P GK
Sbjct: 18 SHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGK 63
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics,
NPPSFA; 2.30A {Streptomyces coelicolor}
Length = 340
Score = 28.1 bits (61), Expect = 4.3
Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 8/127 (6%)
Query: 282 DKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGK 341
D ++ +D G +E++ + + P+ S D +YGL+
Sbjct: 14 DLPLEEVCRLARDFGYDGLELACWGDHFEVDKAL-ADPSYVDSRHQLLD--KYGLK---- 66
Query: 342 DILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGV 401
+ + + ++ IK A GV
Sbjct: 67 -CWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGV 125
Query: 402 DVILTPT 408
D ++ T
Sbjct: 126 DTVIGFT 132
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four
helix bundle, DNA binding protein; 1.95A {Mus musculus}
SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Length = 454
Score = 27.7 bits (61), Expect = 6.8
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 455 KKMPLGLQLIGQPFREET--------LFSVGQIIEKEAGYF 487
+K+P GL IG F + + VG+ E +F
Sbjct: 160 RKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWF 200
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A
{Sulfolobus solfataricus}
Length = 535
Score = 27.5 bits (61), Expect = 7.0
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 18/68 (26%)
Query: 253 YERALDQSIQG---MTVG------IPKEYRLDYLSPTID---------KTWQQGISWLKD 294
YER +D ++ +T G I KE YL T+ K + S + +
Sbjct: 76 YERFMDVNMTKYNNITAGKVYFEVIKKEREGKYLGQTVQIIPHVTDQIKDMIRYASKINN 135
Query: 295 AGAKIVEI 302
A +VEI
Sbjct: 136 AEITLVEI 143
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,269,428
Number of extensions: 202991
Number of successful extensions: 515
Number of sequences better than 10.0: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 25
Length of query: 493
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 397
Effective length of database: 3,365,806
Effective search space: 1336224982
Effective search space used: 1336224982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.8 bits)