RPSBLAST alignment of GI: 254780978 and SCOP domain: d2gi3a1

Alignment
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475
 Score =  385 bits (990), Expect = e-108
 Identities = 190/492 (38%), Positives = 298/492 (60%), Gaps = 24/492 (4%)

Query: 1   MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD 60
           M +L+F  ++   + L+  +    +L    ++ I+  +  + A+I V    +        
Sbjct: 1   MIDLDFRKLT-IEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKK---- 55

Query: 61  KRIINGDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLG 120
                       GIP+ IKD   T G+ T   S IL+ +   +++TV +K+ + G V++G
Sbjct: 56  --------GKFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVG 107

Query: 121 KLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDT 180
           K N+DEFAMGSS E S +              +  PGGSSGGS+AAV+  +  A++G+DT
Sbjct: 108 KANLDEFAMGSSTERSAF-----FPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDT 162

Query: 181 GGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDE 240
           GGS+RQPAS  G VG KPTYG  SR G+++FA SLDQ G IT+TVRD+AIL++ I+G DE
Sbjct: 163 GGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDE 222

Query: 241 CDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIV 300
            DAT VN    D+   +++ + GM   +P+E     +   + + +++ +  L+  GAK+ 
Sbjct: 223 NDATTVN-RKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVE 281

Query: 301 EISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVK 360
            + +PH +Y++  YY+I+PAEASSNLAR+DGV+YGLR++ K + EMY  TR++GFG+EV+
Sbjct: 282 RVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVR 341

Query: 361 HRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEE 420
            RIMIGT+ LS+  Y++++ +A K+R  I  +  E   Q  D ILTPT+P +AF +G+ +
Sbjct: 342 RRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQ-YDAILTPTSPVTAFKIGEIK 400

Query: 421 NNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQII 480
           +    + +   D+FT+  N+AGLPAISVP       +P+G+Q+IG+ F +  +F + + I
Sbjct: 401 D---PLTYYLMDIFTIPANLAGLPAISVPFGF-SNNLPVGVQVIGRRFADGKVFRIARAI 456

Query: 481 EKEAGYFRPHKW 492
           EK + Y     +
Sbjct: 457 EKNSPYNENGMF 468

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]