HHsearch alignment for GI: 254780979 and conserved domain: COG0064
>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=1327.39 Aligned_cols=475 Identities=56% Similarity=0.914 Sum_probs=459.5
Q ss_pred CCCCCEEEEEEEEEEECCCCCCCCCCCCCCC-CCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEEC
Q ss_conf 4780338989997888689865558842468-987652061302689888737899999999987782976244201311
Q gi|254780979|r 19 TGDWEVVIGIEVHAQLSVVSKLFSGASVNFG-AEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFAR 97 (500)
Q Consensus 19 ~~~~e~vIGLEiH~qL~t~tKlFc~c~~~~~-~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdR 97 (500)
T Consensus 3 ~~~~e~vIGLEvHvqL~T~tKlFs~~~~~f~~a~PNtnv~pv~lglPGaLPvlN~~av~~ai~~~lAL~~~i~~~~~FdR 82 (483)
T COG0064 3 MMNFEVVIGLEVHVQLNTKTKLFSGCSTDFGGAEPNTNVCPVCLGLPGALPVLNKEAVEKAIKAGLALNCEINEKSVFDR 82 (483)
T ss_pred CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCEECCC
T ss_conf 65520576557877861576646788521267899777885002689876656899999999964531656256503166
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEE
Q ss_conf 32123767888201445442015338999706777774103798423666520231001156787148866157861257
Q gi|254780979|r 98 KNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALME 177 (500)
Q Consensus 98 K~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiE 177 (500)
T Consensus 83 K~YFYPDlPkgyQIsQ~d~Pi~~~G~i~i~~~~~-----~~k~i~I~r~HlEEDaGK~~h~~~~~~s~vD~NRaGvPLiE 157 (483)
T COG0064 83 KNYFYPDLPKGYQISQFDKPIAENGYLEIELEDG-----EEKRIGIERIHLEEDAGKLTHEGSAGYSLVDYNRAGVPLIE 157 (483)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC-----CCEEECCCEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEE
T ss_conf 7889998888865013556656685799864788-----60253452343023687650058998404541326874046
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 630365277899999999999998642045676432201125754321376-6678862223540246599999999999
Q gi|254780979|r 178 IVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARR 256 (500)
Q Consensus 178 IVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~~i~~AI~yEi~R 256 (500)
T Consensus 158 IVtePdirs~~eA~ayl~~Lr~ilrylgisd~~meeGsmR~DaNvSvr~~g~~~~GtrvEiKNiNS~~~v~kAi~yE~~R 237 (483)
T COG0064 158 IVTEPDIRSPEEARAYLKKLRSILRYLGISDGNMEEGSMRCDANVSVRPKGQEEFGTRVEIKNLNSFRNVEKAIEYEIQR 237 (483)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 54146789999999999999999998088988756675676410330246654557635452586499999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 99973139800344323375543366530356677778332778773126999999988530248368988643202688
Q gi|254780979|r 257 QIAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGIS 336 (500)
Q Consensus 257 Q~~ll~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGLs 336 (500)
T Consensus 238 Q~~~l~~g~~i~qeTR~~d~~~g~T~~mR~KE~a~DYRYfpePDl~p~~is~~~i~~~~~~lPelP~~~~~r~~~~~gls 317 (483)
T COG0064 238 QIELLESGGEIEQETRRFDEATGKTVSMRSKEEAEDYRYFPEPDLPPLEISDEWIEEVRATLPELPDEKRERYIKEYGLS 317 (483)
T ss_pred HHHHHHCCCCEEEHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf 99999738966502005056788076410346644456579998487237999999999757789899999999974999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH-
Q ss_conf 999888764113678988640-243024577776545788764338740006489899999998886387314789999-
Q gi|254780979|r 337 LYDASVLVSDKSIADYFEKLA-VNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDI- 414 (500)
Q Consensus 337 ~~dA~~L~~~~~la~~FE~v~-~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is~~~aK~i- 414 (500)
T Consensus 318 ~~dA~~L~~d~~la~~fe~~~~~~~~~k~~anW~~~el~~~Ln~~~~~i~~~~~~p~~la~Li~li~~g~IS~k~AK~~v 397 (483)
T COG0064 318 EYDARVLTSDKELADYFEEAVKAGADAKLAANWLTNELLGLLNKAGITLEESPLTPEQLAELIKLIDEGTISGKIAKELV 397 (483)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 88999997689999999999745888899888999999999986599755358998999999999970873199999999
Q ss_pred HHHHHHCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999981799988999963987618988999999999983999899752-7213226589999997289778899999999
Q gi|254780979|r 415 FNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMKNTGGKANPSIVQKMLK 493 (500)
Q Consensus 415 l~~l~~~~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK~tkGkAdpk~v~~lL~ 493 (500)
T Consensus 398 ~~~~~~~~~~p~~iie~~gL~qisD~~~l~~~V~evia~Np~~ve~yk~GK~~~~~f~vGQVMk~T~GkAnP~~v~~ll~ 477 (483)
T COG0064 398 FEILANGGKDPEEIIEEKGLVQISDEGELEKIVDEVLAENPKAVEDYKSGKEKALGFLVGQVMKATKGKANPQQVNELLK 477 (483)
T ss_pred HHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99997379998999986496324899999999999999798999998646898988899999998469999899999999
Q ss_pred HHHCC
Q ss_conf 97078
Q gi|254780979|r 494 EKLGI 498 (500)
Q Consensus 494 e~L~~ 498 (500)
T Consensus 478 ~~L~~ 482 (483)
T COG0064 478 EKLGK 482 (483)
T ss_pred HHHCC
T ss_conf 98624