HHsearch alignment for GI: 254780979 and conserved domain: PRK05477
>PRK05477 gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated.
Probab=100.00 E-value=0 Score=1383.66 Aligned_cols=474 Identities=58% Similarity=0.944 Sum_probs=462.5
Q ss_pred CCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECC
Q ss_conf 47803389899978886898655588424689876520613026898887378999999999877829762442013113
Q gi|254780979|r 19 TGDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARK 98 (500)
Q Consensus 19 ~~~~e~vIGLEiH~qL~t~tKlFc~c~~~~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK 98 (500)
T Consensus 2 ~~~~~~viGlEiH~qL~t~tKlF~~~~~~~~~~pNt~v~~v~~~~PG~lP~lN~~av~~ai~~a~al~~~i~~~~~f~RK 81 (479)
T PRK05477 2 MMNFEVVIGLEVHVQLNTKSKIFSGCSTEFGAEPNTNVCPVCLGLPGALPVLNKEAVEKAIKAGLALNCEIAKRSVFDRK 81 (479)
T ss_pred CCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCC
T ss_conf 87653168899987707996857899987899976663842006898877669999999999999839864633155023
Q ss_pred CEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEE
Q ss_conf 21237678882014454420153389997067777741037984236665202310011567871488661578612576
Q gi|254780979|r 99 NYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEI 178 (500)
Q Consensus 99 ~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEI 178 (500)
T Consensus 82 ~YfYpDlp~gyQiTq~~~Pi~~~G~l~~~~~~g~-----~k~i~I~~i~lEeD~gk~~h~~~~~~~~vD~NRaG~PLiEI 156 (479)
T PRK05477 82 NYFYPDLPKGYQISQYDEPIVENGYLEIEVEDGE-----EKRIGIERIHLEEDAGKSVHDGGAGYSLVDYNRAGVPLIEI 156 (479)
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCEEEEEECCCC-----EEEEEEEEEEECCCHHHHCCCCCCCCEEEECCCCCCCEEEE
T ss_conf 4668989877521667556306618999807896-----45762278886001001024679982476224579733788
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 30365277899999999999998642045676432201125754321376-66788622235402465999999999999
Q gi|254780979|r 179 VTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQ 257 (500)
Q Consensus 179 VT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ 257 (500)
T Consensus 157 vT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~me~GslR~DvNVSi~~~g~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ 236 (479)
T PRK05477 157 VSEPDMRSPEEAVAYLKKLRSILRYLGISDGNMEEGSLRCDANVSVRPKGQEEFGTRVEIKNLNSFRFVEKAIEYEIQRQ 236 (479)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 54799899999999999999999861878666334512056624424788655563588627787889999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCH
Q ss_conf 99731398003443233755433665303566777783327787731269999999885302483689886432026889
Q gi|254780979|r 258 IAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISL 337 (500)
Q Consensus 258 ~~ll~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGLs~ 337 (500)
T Consensus 237 ~~ll~~G~~v~qETR~~d~~~g~T~~mR~Ke~a~DYRyfPEpDLppi~i~~e~i~~ik~~lPelP~~~~~rl~~~ygLs~ 316 (479)
T PRK05477 237 IEILESGGEVVQETRLFDEDKGETRSMRSKEEAHDYRYFPEPDLPPLEISDEWIEEIRATLPELPDAKRARFVEEYGLSE 316 (479)
T ss_pred HHHHHCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCH
T ss_conf 99997599823321215378996754445777656440678887773589999999997489989999999998619999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 998887641136789886402-4302457777654578876433874000648989999999888638731478999999
Q gi|254780979|r 338 YDASVLVSDKSIADYFEKLAV-NRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFN 416 (500)
Q Consensus 338 ~dA~~L~~~~~la~~FE~v~~-~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is~~~aK~il~ 416 (500)
T Consensus 317 ~~a~~L~~~~~l~~~Fe~v~~~~~~pk~aanwi~~el~~~Ln~~~~~i~~~~i~~~~laeLi~li~~g~Is~~~AK~il~ 396 (479)
T PRK05477 317 YDARVLTSDKELADYFEAVVAGGADAKLAANWLMGELLGRLNKEGLEIEESPVTPEQLAELIKLIDDGTISGKIAKKVFE 396 (479)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999984679999999999857887775457666789987452798663788999999999999859856899999999
Q ss_pred HHHHCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9981799988999963987618988999999999983999899752-721322658999999728977889999999997
Q gi|254780979|r 417 ILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEK 495 (500)
Q Consensus 417 ~l~~~~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK~tkGkAdpk~v~~lL~e~ 495 (500)
T Consensus 397 ~m~~~~~sp~~ii~~~gL~~isD~~eLe~ii~eVI~~np~~Ve~yk~Gk~ka~gfLmGqVMK~tkGkAdPk~v~elL~e~ 476 (479)
T PRK05477 397 EMLEGGGDPDEIVEEKGLKQISDEGALEAIVDEVLAANPKAVEDYKAGKEKALGFLVGQVMKATKGKANPKLVNELLKEK 476 (479)
T ss_pred HHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99966999999999739824489999999999999979999999976438778789999999857997999999999998
Q ss_pred HC
Q ss_conf 07
Q gi|254780979|r 496 LG 497 (500)
Q Consensus 496 L~ 497 (500)
T Consensus 477 L~ 478 (479)
T PRK05477 477 LG 478 (479)
T ss_pred HC
T ss_conf 67