HHsearch alignment for GI: 254780979 and conserved domain: pfam04558
>pfam04558 tRNA_synt_1c_R1 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1. This is a region found N terminal to the catalytic domain of glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function.
Probab=97.25 E-value=0.027 Score=37.38 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=97.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 6898864320268899988876411367898864024-----30245777765457887643387400064898999999
Q gi|254780979|r 323 DAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVN-----RDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGEL 397 (500)
Q Consensus 323 ~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~~~-----~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeL 397 (500)
T Consensus 4 eel~~lF-~~iGL~e~kAketlKN~k~t~~L~~ii~ea~~~~~~dk~~g~LL-y~lAtk~k~---------~~~~~~~~i 72 (164)
T pfam04558 4 EELLKLF-SKIGLDEKKAKETLKNKKVSASLLAIIAEAGATSGCDKKTGALL-YNLATKLKG---------NEVPHRPLI 72 (164)
T ss_pred HHHHHHH-HHCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHH-HHHHHHCCC---------CCCHHHHHH
T ss_conf 9999999-98598714599998389999999999997565567887899999-999986565---------321207999
Q ss_pred HHHHHCCCCCH-HHHHHHHHHHHHCCC---CHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHH
Q ss_conf 98886387314-789999999981799---98899996398761898899999999998399989975272132265899
Q gi|254780979|r 398 IDLIIDGTISG-KIAKDIFNILWEKGG---TPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVG 473 (500)
Q Consensus 398 i~li~~g~Is~-~~aK~il~~l~~~~~---~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~kgk~ka~gfLvG 473 (500)
T Consensus 73 v~yI~~~kikT~~Qv~aA~~Yl~~~~~~~id~~~fe~~cGVGV~VT~eqI~~~V~~~i~~~k~~i~~~RY~~~n~g~~~~ 152 (164)
T pfam04558 73 VSYIVDGKLKTTLQVDAALKYLKSNGSEAFDVAEFEEACGVGVVVTPEDVERAVADYIEENKEEILEKRYKLFNVGLLLV 152 (164)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99998566897999999999999779988888999997799868889999999999999969999986223565167888
Q ss_pred HHHHHHCCCCCHH
Q ss_conf 9999728977889
Q gi|254780979|r 474 QVMKNTGGKANPS 486 (500)
Q Consensus 474 qVMK~tkGkAdpk 486 (500)
T Consensus 153 ~~r~~LkW-Ad~k 164 (164)
T pfam04558 153 KARPELKW-ADPK 164 (164)
T ss_pred HHHCCCCC-CCCC
T ss_conf 76115899-8989