HHsearch alignment of GI: 254780979 and MMDB domain: 3ip4_B_1-292
>3ip4_B (B:1-292) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=100.00 E-value=0 Score=951.27 Aligned_cols=290 Identities=48% Similarity=0.807 Sum_probs=282.8
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECCCE
Q ss_conf 80338989997888689865558842468987652061302689888737899999999987782976244201311321
Q gi|254780979|r 21 DWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNY 100 (500)
Q Consensus 21 ~~e~vIGLEiH~qL~t~tKlFc~c~~~~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK~Y 100 (500)
+||+|||||||+||+|+|||||+|+++|+++|||+|||||+|+||+||+||++||++|+++|+||||+|++.++||||||
T Consensus 2 ~ye~vIGLEIH~qL~T~tKlFc~c~~~~~~~pNt~vc~v~~g~PG~lP~lN~~av~~Ai~~a~aL~c~I~~~s~FdRK~Y 81 (292)
T 3ip4_B 2 HFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNY 81 (292)
T ss_dssp CEEEEEEEEEEEECCCSBCSSSSSBSSCCSSTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECCEEEEC
T ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCC
T ss_conf 96248889988883799686789998788997767786223799988656999999999999983998362315513324
Q ss_pred ECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEE
Q ss_conf 23767888201445442015338999706777774103798423666520231001156787148866157861257630
Q gi|254780979|r 101 FYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVT 180 (500)
Q Consensus 101 fYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT 180 (500)
|||||||||||||++.|||.||+|+++.+++ .++|+|.||||||||||++|+ ++.|+|||||||+|||||||
T Consensus 82 fYpDlPkgYQiTQ~~~Pi~~~G~i~i~~~~~------~k~i~I~rihlEEDagK~~h~--~~~slvD~NRaGvPLiEIVT 153 (292)
T 3ip4_B 82 FYPDNPKAYQISQFDQPIGENGYIDIEVDGE------TKRIGITRLHMEEDAGKSTHK--GEYSLVDLNRQGTPLIEIVS 153 (292)
T ss_dssp CBTTBTTSEEEECSSSCSEEEEEEEECSSSS------CEEEEEEEEEEEECCCEEEEE--TTEEEEECTTTTCEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCC------CEEEEEEEEEEEECCCCCCCC--CCCEEEEECCCCCCCEEEEE
T ss_conf 3899986533114656657772581313777------459854357875021343335--77548861479984035641
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 365277899999999999998642045676432201125754321376-6678862223540246599999999999999
Q gi|254780979|r 181 KPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQIA 259 (500)
Q Consensus 181 ~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ 259 (500)
+|||+||+||++|+++|+++|||+|+|||+||+|+||||||||||+.| .+||+||||||||||++|++||+||+.||++
T Consensus 154 ~Pd~~s~~eA~~~~~~l~~il~~~gvsd~~me~GslR~DvNVSi~~~g~~~~g~RvEIKNlnS~~~i~~Ai~~E~~RQ~~ 233 (292)
T 3ip4_B 154 EPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEE 233 (292)
T ss_dssp CSCBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTSCCCCCEEEEECCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 36868899999999999987642461024545575146645233777866676258874377708999999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 73139800344323375543366530356677778332778773126999999988530
Q gi|254780979|r 260 ILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQI 318 (500)
Q Consensus 260 ll~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~l 318 (500)
+|+.|+.|.||||+||+.++.|++||+||++.||||||||||||+.|+++||++++++|
T Consensus 234 ~l~~g~~i~qeTr~~d~~~~~T~~mR~KE~~~DYryfpepdlppi~i~~~~i~~i~~~l 292 (292)
T 3ip4_B 234 ELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTI 292 (292)
T ss_dssp HHHHTCCCCEEEEEECTTTSCEEEEEEECSCCCCCCEECTTSCCEECCHHHHHHHHTTC
T ss_pred HHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 98679965244411244453357502466653124444766687667599999898668