Query         gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 500
No_of_seqs    209 out of 1752
Neff          6.3 
Searched_HMMs 33803
Date          Wed Jun  1 19:58:50 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780979.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3ip4_B Aspartyl/glutamyl-tRNA 100.0       0       0  951.3  28.3  290   21-318     2-292 (292)
  2 >3h0l_B Aspartyl/glutamyl-tRNA 100.0       0       0  936.1  29.4  294   19-319     2-296 (296)
  3 >1zq1_C Glutamyl-tRNA(Gln) ami 100.0       0       0  778.4  17.2  279   17-319     8-329 (329)
  4 >2d6f_C Glutamyl-tRNA(Gln) ami 100.0       0       0  769.8  21.0  275   21-320     2-324 (324)
  5 >2hz7_A Glutaminyl-tRNA synthe 100.0       0       0  433.8  -8.5  282  210-497    40-351 (351)
  6 >3h0l_B Aspartyl/glutamyl-tRNA 100.0 1.4E-36 4.1E-41  289.5  12.9  178  320-497     1-180 (182)
  7 >2d6f_C Glutamyl-tRNA(Gln) ami 100.0 3.5E-32   1E-36  257.0   3.5  173  321-499     1-173 (174)
  8 >1zq1_C Glutamyl-tRNA(Gln) ami 100.0 7.5E-32 2.2E-36  254.6   4.8  172  320-498     1-173 (177)
  9 >3ip4_B Aspartyl/glutamyl-tRNA  99.9 3.9E-24 1.2E-28  197.8  12.8  118  319-436     1-119 (119)
 10 >3ip4_B Aspartyl/glutamyl-tRNA  99.6 6.4E-16 1.9E-20  137.2   7.4   63  437-499     1-64  (72)
 11 >1ng6_A Hypothetical protein Y  99.0 7.4E-10 2.2E-14   92.6   7.0   54  436-497     2-56  (56)
 12 >2hz7_A Glutaminyl-tRNA synthe  91.2   0.033 9.8E-07   36.2  -0.6  113  166-301    38-180 (351)
 13 >1ltz_A Phenylalanine-4-hydrox  67.0     4.6 0.00013   20.5   2.7   45  279-335    59-103 (110)
 14 >2v27_A Phenylalanine hydroxyl  66.9     4.6 0.00014   20.4   2.7   45  279-335    60-104 (108)
 15 >1toh_A Tyroh, tyrosine hydrox  54.7     5.2 0.00015   20.1   1.2   52  279-342    43-97  (107)
 16 >2inr_A DNA topoisomerase 4 su  49.2      17  0.0005   16.3   7.4   20  324-343    82-101 (158)
 17 >3e2d_A Alkaline phosphatase;   46.4      19 0.00055   16.0   3.8   33  384-416    12-44  (88)
 18 >1mlw_A Tryptophan 5-monooxyge  44.1     9.6 0.00028   18.1   1.2   43  280-334    99-141 (171)
 19 >1phz_A Protein (phenylalanine  43.1     8.2 0.00024   18.6   0.8   45  279-335   133-177 (275)
 20 >1tme_2 Theiler'S murine encep  42.7      11 0.00034   17.5   1.4   77   22-116   104-191 (267)
 21 >2nov_A DNA topoisomerase 4 su  41.4      22 0.00065   15.4   5.6   34  309-344    70-103 (159)
 22 >3d37_A Tail protein, 43 kDa;   41.3      22 0.00065   15.4   2.8   23  177-199    38-60  (65)
 23 >1tc5_A Probable eukaryotic D-  38.5      24 0.00072   15.1   5.1   46  180-228   109-157 (194)
 24 >1j8u_A Phenylalanine-4-hydrox  38.4      11 0.00032   17.7   0.8   54  279-344   162-220 (305)
 25 >1d4m_2 Protein (coxsackieviru  36.7      18 0.00053   16.1   1.7   23   23-46    101-123 (261)
 26 >2qj8_A MLR6093 protein; NP_10  35.7      27 0.00079   14.8   3.6   47  167-213    49-95  (187)
 27 >1ncq_B Coat protein VP2; HRV,  33.4      20 0.00058   15.8   1.4   78   23-116   101-186 (262)
 28 >2hiv_A Thermostable DNA ligas  31.9      30  0.0009   14.4   6.8   87  347-449    24-119 (128)
 29 >1aym_2 HRV16, human rhinoviru  28.9      26 0.00077   14.9   1.4   79   23-116   101-187 (261)
 30 >2pw6_A Uncharacterized protei  26.7      10 0.00031   17.8  -0.9   40  259-308   104-143 (271)
 31 >2bbk_H Methylamine dehydrogen  26.2      36  0.0011   13.9   1.8   43  105-150    53-106 (106)
 32 >2mad_H Methylamine dehydrogen  25.8      38  0.0011   13.7   1.9   22  105-129    54-75  (107)
 33 >2p0v_A Hypothetical protein B  25.5      39  0.0011   13.6   4.2   19  339-357    62-80  (119)
 34 >3c75_H MADH, methylamine dehy  25.3      39  0.0011   13.6   1.8   43  105-150    53-106 (106)
 35 >3cji_C Polyprotein; virus cap  25.2      33 0.00098   14.1   1.4   24   22-46    109-132 (284)
 36 >1ixr_A Holliday junction DNA   23.7      42  0.0012   13.4   4.8  105  324-430    69-184 (191)
 37 >1zvu_A Topoisomerase IV subun  23.5      42  0.0012   13.4   2.3   14  331-344    63-76  (111)
 38 >1vcc_A DNA topoisomerase I; D  23.5      26 0.00076   14.9   0.6   12   94-105    64-75  (77)
 39 >2gno_A DNA polymerase III, ga  22.9      43  0.0013   13.3   5.1   95  349-451    40-134 (165)
 40 >2ajt_A L-arabinose isomerase;  22.4      44  0.0013   13.2   2.4   30  168-197    38-67  (174)
 41 >2vj4_A Protein MXIC, MXIC; se  21.9      11 0.00034   17.5  -1.5   26  290-315    30-55  (79)
 42 >1qtq_A GLNRS, protein (glutam  21.6      45  0.0013   13.1   2.5   65   22-106    81-151 (175)
 43 >3dsm_A Uncharacterized protei  21.3      38  0.0011   13.7   1.1   17  102-127    25-41  (88)
 44 >1wb1_A Translation elongation  21.1      46  0.0014   13.0   1.7   34  207-244    23-56  (91)
 45 >2wvr_C DNA replication factor  20.1      25 0.00075   15.0   0.0   17  483-499   527-543 (546)
 46 >1jl0_A Adometdc, S-adenosylme  20.0      49  0.0014   12.9   1.6   36   73-108    89-125 (168)

No 1  
>>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B (B:1-292)
Probab=100.00  E-value=0  Score=951.27  Aligned_cols=290  Identities=48%  Similarity=0.807  Sum_probs=282.8

Q ss_pred             CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECCCE
Q ss_conf             80338989997888689865558842468987652061302689888737899999999987782976244201311321
Q gi|254780979|r   21 DWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNY  100 (500)
Q Consensus        21 ~~e~vIGLEiH~qL~t~tKlFc~c~~~~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK~Y  100 (500)
                      +||+|||||||+||+|+|||||+|+++|+++|||+|||||+|+||+||+||++||++|+++|+||||+|++.++||||||
T Consensus         2 ~ye~vIGLEIH~qL~T~tKlFc~c~~~~~~~pNt~vc~v~~g~PG~lP~lN~~av~~Ai~~a~aL~c~I~~~s~FdRK~Y   81 (292)
T 3ip4_B            2 HFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNY   81 (292)
T ss_dssp             CEEEEEEEEEEEECCCSBCSSSSSBSSCCSSTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECCEEEEC
T ss_pred             CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCC
T ss_conf             96248889988883799686789998788997767786223799988656999999999999983998362315513324


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEE
Q ss_conf             23767888201445442015338999706777774103798423666520231001156787148866157861257630
Q gi|254780979|r  101 FYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVT  180 (500)
Q Consensus       101 fYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT  180 (500)
                      |||||||||||||++.|||.||+|+++.+++      .++|+|.||||||||||++|+  ++.|+|||||||+|||||||
T Consensus        82 fYpDlPkgYQiTQ~~~Pi~~~G~i~i~~~~~------~k~i~I~rihlEEDagK~~h~--~~~slvD~NRaGvPLiEIVT  153 (292)
T 3ip4_B           82 FYPDNPKAYQISQFDQPIGENGYIDIEVDGE------TKRIGITRLHMEEDAGKSTHK--GEYSLVDLNRQGTPLIEIVS  153 (292)
T ss_dssp             CBTTBTTSEEEECSSSCSEEEEEEEECSSSS------CEEEEEEEEEEEECCCEEEEE--TTEEEEECTTTTCEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEECCCC------CEEEEEEEEEEEECCCCCCCC--CCCEEEEECCCCCCCEEEEE
T ss_conf             3899986533114656657772581313777------459854357875021343335--77548861479984035641


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             365277899999999999998642045676432201125754321376-6678862223540246599999999999999
Q gi|254780979|r  181 KPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQIA  259 (500)
Q Consensus       181 ~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~  259 (500)
                      +|||+||+||++|+++|+++|||+|+|||+||+|+||||||||||+.| .+||+||||||||||++|++||+||+.||++
T Consensus       154 ~Pd~~s~~eA~~~~~~l~~il~~~gvsd~~me~GslR~DvNVSi~~~g~~~~g~RvEIKNlnS~~~i~~Ai~~E~~RQ~~  233 (292)
T 3ip4_B          154 EPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEE  233 (292)
T ss_dssp             CSCBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTSCCCCCEEEEECCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             36868899999999999987642461024545575146645233777866676258874377708999999999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             73139800344323375543366530356677778332778773126999999988530
Q gi|254780979|r  260 ILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQI  318 (500)
Q Consensus       260 ll~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~l  318 (500)
                      +|+.|+.|.||||+||+.++.|++||+||++.||||||||||||+.|+++||++++++|
T Consensus       234 ~l~~g~~i~qeTr~~d~~~~~T~~mR~KE~~~DYryfpepdlppi~i~~~~i~~i~~~l  292 (292)
T 3ip4_B          234 ELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTI  292 (292)
T ss_dssp             HHHHTCCCCEEEEEECTTTSCEEEEEEECSCCCCCCEECTTSCCEECCHHHHHHHHTTC
T ss_pred             HHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             98679965244411244453357502466653124444766687667599999898668


No 2  
>>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B* (B:1-296)
Probab=100.00  E-value=0  Score=936.12  Aligned_cols=294  Identities=51%  Similarity=0.892  Sum_probs=286.1

Q ss_pred             CCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECC
Q ss_conf             47803389899978886898655588424689876520613026898887378999999999877829762442013113
Q gi|254780979|r   19 TGDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARK   98 (500)
Q Consensus        19 ~~~~e~vIGLEiH~qL~t~tKlFc~c~~~~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK   98 (500)
                      +.+|++||||||||||+|+|||||+|+++|+++|||+|||||+|+||+||+||++||++|+++|+||||+|+++++||||
T Consensus         2 ~~~~~~~iGLEiH~qL~t~tKlF~~c~~~~~~~pN~~v~~~~~~~PG~lP~lN~~av~~ai~~a~aLnc~i~~~~~FdRK   81 (296)
T 3h0l_B            2 NEKYEAVIGLEIHVQMDTKTKMFCGCKVEFGAEPNTNVCPVCLGMPGALPIVNKRAVEYAIRASLALNCEVHEESVFARK   81 (296)
T ss_dssp             -CCEEEEEEEEEEEECCCSBCSSSSCBCCTTCCTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECEEEE
T ss_pred             CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf             98851788899987828996757999987788874551751465999875358999999999999839872535368888


Q ss_pred             CEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEE
Q ss_conf             21237678882014454420153389997067777741037984236665202310011567871488661578612576
Q gi|254780979|r   99 NYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEI  178 (500)
Q Consensus        99 ~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEI  178 (500)
                      |||||||||||||||++.|||.||+|++...++.     .++|+|.||||||||||++|+  +++|+|||||||+|||||
T Consensus        82 ~YfY~DlPkgYQiTQ~~~Pi~~~G~i~i~~~~g~-----~k~i~I~~i~lEEDagk~~h~--~~~s~vD~NRaGvPLiEI  154 (296)
T 3h0l_B           82 HYFYPDLPKGYQISQYEKPLATNGWVELNLPNGE-----KKKVRIRRLHIEEDAGKNIHE--GDKTLVDLNRAGTPLMEI  154 (296)
T ss_dssp             ECCCTTCTTSEEEEESSSCSEEEEEEEEECTTSC-----EEEEEEEEEEEEECCCEEEEE--TTEEEEECSSTTCEEEEE
T ss_pred             EECCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC-----EEEEEEEEEEEECCCCCCCCC--CCCEEEECCCCCCCEEEE
T ss_conf             6227999830001034255133555999825897-----347726789960136755668--996178324689853788


Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             30365277899999999999998642045676432201125754321376-66788622235402465999999999999
Q gi|254780979|r  179 VTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQ  257 (500)
Q Consensus       179 VT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ  257 (500)
                      ||+|||+||+||++|+++|+++|||+|+|||+||+|+|||||||||+++| .+||+||||||||||++|.+||+||+.||
T Consensus       155 VTePd~~s~~ea~~~~~~l~~ilr~~gv~~~~me~GslR~DvNVSi~~~g~~~~g~RvEIKNlnS~~~i~~aIe~E~~RQ  234 (296)
T 3h0l_B          155 VTEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTRVEIKNVNSFRFVQKALEYEIERQ  234 (296)
T ss_dssp             EECTTBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTCCSCCCCEEEECCCSHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             70577568999999999999999984767566656632356552557788766665364538746899999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             99731398003443233755433665303566777783327787731269999999885302
Q gi|254780979|r  258 IAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIP  319 (500)
Q Consensus       258 ~~ll~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lP  319 (500)
                      +++|+.|+.|.||||+||+.+++|++||+||++.||||||||||||+.|+++||++++.+||
T Consensus       235 ~~ll~~g~~i~~eTr~~d~~~~~T~~mR~KE~~~dYRy~pEpdLppi~i~~~~i~~i~~~lP  296 (296)
T 3h0l_B          235 INVVEEGGEVVQETRTFDPQTGKTYPMRTKEEAEDYRYFPDPDLVPLKVKKEWIEEIKKNMP  296 (296)
T ss_dssp             HHHHHTTCCCCCCEEEEETTTTEEECCSCCCCCCCCCCEECTTSCCEECCHHHHHHHHHTCC
T ss_pred             HHHHHCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             99998599543133014665334650445454444677777887773368999999998689


No 3  
>>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} (C:1-280,C:408-456)
Probab=100.00  E-value=0  Score=778.37  Aligned_cols=279  Identities=27%  Similarity=0.395  Sum_probs=265.1

Q ss_pred             CCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCC----CCCCCHHHCCC----CCCCCCC------------------
Q ss_conf             454780338989997888689865558842468987----65206130268----9888737------------------
Q gi|254780979|r   17 GTTGDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEP----NTQVSFFDAAM----PGMLPIL------------------   70 (500)
Q Consensus        17 ~~~~~~e~vIGLEiH~qL~t~tKlFc~c~~~~~~~p----Nt~v~~~~~g~----PG~lP~l------------------   70 (500)
                      -+.++|+++|||||||||+|+ ||||+|+++|+++|    |+++||+|.++    ||+||++                  
T Consensus         8 ~~~~~~~~~iGLEIH~QL~T~-KLFc~c~t~~~~~p~~~~n~~~~p~~s~l~~~~Pgalp~~~~~~~~~y~~~~~~tclv   86 (329)
T 1zq1_C            8 FNYEELGLKVGLEIHRQLDTK-KLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKKGRVYVYEGNYELTDLV   86 (329)
T ss_dssp             SCTTTTTCCBEEEEEEEBSSB-CTTSSCBCCCCSCCCEEEEECCCCCEETTSCBCHHHHHHHHTTCEEEEEECTTTCBGG
T ss_pred             CCHHHHCCEEEEEEEEEECCC-EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCC
T ss_conf             598996967879999877774-0378998767777654456777873013466786424666421000002454310001


Q ss_pred             ----------CHHHHHHHHHHHHHHCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf             ----------8999999999877829762442013113212376788820144544201533899970677777410379
Q gi|254780979|r   71 ----------NGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIE  140 (500)
Q Consensus        71 ----------N~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~  140 (500)
                                |++||++|+++|+||||+|+++++||||||||||||+||||||+   ||.||+++++.          ++
T Consensus        87 e~Deepp~~~N~~Av~~ai~~a~aLn~~i~~~~~f~RK~yfy~dlp~GyQiTq~---ia~~G~i~~~~----------~~  153 (329)
T 1zq1_C           87 YMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNVSGFQRTAI---IATDGKVETPW----------GA  153 (329)
T ss_dssp             GTTSSCCCCCCHHHHHHHHHHHHHTTCEECSEECCEEEECSSSSSTTSEEEECE---EEEEEEECCTT----------CC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCEEE---EECCCEEECCC----------CC
T ss_conf             245567776689999999999998089845356562047778887667761027---63783896136----------75


Q ss_pred             EEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC
Q ss_conf             84236665202310011567871488661578612576303652778999999999999986420456764322011257
Q gi|254780979|r  141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADV  220 (500)
Q Consensus       141 v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~Dv  220 (500)
                      |+|.+|||||||||++|+. +++|++||||||+|||||||+|||+||+||++|+++|+++|||+|+|+.  ++|+|||||
T Consensus       154 I~I~~I~LEEDaak~ih~~-~~~~l~DlNR~GiPLiEIvTePdi~speeA~~~~~~l~~llr~~g~~~~--~~GsiR~Dv  230 (329)
T 1zq1_C          154 VGIPTICLEEDAARIIERK-DKEVIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKR--GLGTIRQDL  230 (329)
T ss_dssp             EEEEEEEEEECCCEEEEEE-TTEEEEESTTTTCEEEEEECCTTBCSHHHHHHHHHHHHHHHHHTSCBCC--SSTTEEEEE
T ss_pred             CCCEEEEEECCCCCCCCCC-CCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCC
T ss_conf             3512576544667623579-9954785045787148986168877989999999999999999974567--787322566


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------CCCEEEEEECCCCCCCC
Q ss_conf             54321376667886222354024659999999999999973139800344323375-------54336653035667777
Q gi|254780979|r  221 NVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIRQETRLFDP-------SKNETRSLRTKEDALDY  293 (500)
Q Consensus       221 NVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll~~G~~v~qETR~~d~-------~~~~T~~mR~KE~a~DY  293 (500)
                      ||||     .+|+||||||||||++|++||+||+.||.++|+.|+++.||||+||+       ..|.|.+||+.++++  
T Consensus       231 NVSi-----~~G~RvEIKNvnS~~~I~~aI~~E~~RQ~~lLe~g~~i~~eTr~~dp~etr~a~~~g~t~~~rp~pg~a--  303 (329)
T 1zq1_C          231 NVSI-----KGGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKPEETRRALPDGNTEYMRPLPGKA--  303 (329)
T ss_dssp             EECC-----TTSCCEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHCCCGGCCCEEEECTTSCEEEEECCCCCC--
T ss_pred             CCCC-----CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCCCCCC--
T ss_conf             7556-----898467511343478899999999999999997000233213555563010347889875400001346--


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             83327787731269999999885302
Q gi|254780979|r  294 RYFSEPDLLPLEIDEDFIRAIKKQIP  319 (500)
Q Consensus       294 RyfPEPDLPpi~is~e~i~~i~~~lP  319 (500)
                      |||||+|+||+.|++++++.+++.+|
T Consensus       304 rmypetd~~~~~~~~~~~~~~~~~~p  329 (329)
T 1zq1_C          304 RMYPETDIPPLRIPDDLKKKIKENLP  329 (329)
T ss_dssp             CEEECTTSCCEECCHHHHHHHHTSCC
T ss_pred             CCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf             76899998887458999999998642


No 4  
>>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} (C:1-273,C:395-445)
Probab=100.00  E-value=0  Score=769.78  Aligned_cols=275  Identities=29%  Similarity=0.457  Sum_probs=259.2

Q ss_pred             CCCEE---EEEEEEEEECCCCCCCCCCCCCC-CCCCCCCCCHHHCCCCCCCCC---------------------------
Q ss_conf             80338---98999788868986555884246-898765206130268988873---------------------------
Q gi|254780979|r   21 DWEVV---IGIEVHAQLSVVSKLFSGASVNF-GAEPNTQVSFFDAAMPGMLPI---------------------------   69 (500)
Q Consensus        21 ~~e~v---IGLEiH~qL~t~tKlFc~c~~~~-~~~pNt~v~~~~~g~PG~lP~---------------------------   69 (500)
                      |||.+   ||||||+||+|+|||||+|+++| +++||+++|++|.++||+||+                           
T Consensus         2 dye~v~l~IGLEIH~QL~T~tKLFc~c~t~~~~~epn~~v~~~~~~~pg~Lp~id~aa~~e~~k~~~~~y~~~~~~tClv   81 (324)
T 2d6f_C            2 DWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAFEEAMRKLHFHYENYHEETCLV   81 (324)
T ss_dssp             CHHHHTCEEEEEEEEECCCSBCSSSCSBSSCCCSCCSEEEEEECCCC----------CTTTTGGGGEEEEEECTTTCCHH
T ss_pred             CHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             86671780667987886798677789988778899986646545678765555548899887542001102356654423


Q ss_pred             ---------CCHHHHHHHHHHHHHHCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf             ---------78999999999877829762442013113212376788820144544201533899970677777410379
Q gi|254780979|r   70 ---------LNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIE  140 (500)
Q Consensus        70 ---------lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~  140 (500)
                               +|++|+++|+++|+||||+|++.++||||||||||||+||||||+   ||.||+++++          .++
T Consensus        82 ~~~e~p~~pln~eav~~ai~~a~aln~~i~~~~~f~RK~y~y~dlp~gyQiTq~---ia~~G~i~~~----------~~~  148 (324)
T 2d6f_C           82 EADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQVIDGSNTGGFQRTGL---VATDGHLETP----------QGT  148 (324)
T ss_dssp             HHTSSCCCCCCHHHHHHHHHHHHHTTCEECSEECCEEEECTTSSSSSSEEEEEE---EEEEEEEEET----------TEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE---ECCEEEEEEC----------CCE
T ss_conf             356678888799999999999997298225455101146678888867514058---4004589613----------661


Q ss_pred             EEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC
Q ss_conf             84236665202310011567871488661578612576303652778999999999999986420456764322011257
Q gi|254780979|r  141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADV  220 (500)
Q Consensus       141 v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~Dv  220 (500)
                      |+|.+|||||||||++|+. +++|++||||||+|||||||+|||+||+||++|+++|+++|||+|+|++   +|+|||||
T Consensus       149 V~I~~i~LEEDaak~ih~~-~~~s~vDlNRaGiPLiEIvTePdi~speeA~~~~~~i~~ilr~~Gv~~g---~GsiR~Dv  224 (324)
T 2d6f_C          149 VKIENLCLEEDAARRIRET-GDGVVFRLDRLGIPLVEITTDPSMSDPQQLREVAYQIGQILRSTRVKRG---LGTIRQDL  224 (324)
T ss_dssp             EEEEEEEEEECCCEEEEEE-TTEEEEETTSTTCEEEEEECCSCCCCHHHHHHHHHHHHHHHTTSSCCCS---STTCEEEE
T ss_pred             EEEEEEEECCCCCCCCCCC-CCCEEECHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCC
T ss_conf             4122366336777423466-7623431000586347887247858889999999999988753211466---53323523


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC--------CCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             543213766678862223540246599999999999999731398003--------443233755433665303566777
Q gi|254780979|r  221 NVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIR--------QETRLFDPSKNETRSLRTKEDALD  292 (500)
Q Consensus       221 NVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll~~G~~v~--------qETR~~d~~~~~T~~mR~KE~a~D  292 (500)
                      ||||++     |+||||||||||++|++||+||+.||.++|+.|+++.        .|||+..+ .|.|.+||+.++++ 
T Consensus       225 NVSi~~-----G~RvEIKNvnsl~~I~~aIeyEv~RQ~~ll~~g~~l~~r~~~~vp~etr~~~~-~g~t~~~rp~pg~~-  297 (324)
T 2d6f_C          225 NISIRD-----GARVEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQERGAVVVPEETRKALP-DGNTQYLRPLPTSS-  297 (324)
T ss_dssp             EEECTT-----SCCEEEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCECCCEEEEECS-SSCEEEEEECCCCC-
T ss_pred             CCCCCC-----CCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHCCCC-CCCCCCCCCCCCCC-
T ss_conf             456689-----86022368765679999999999999999970650102662435254414587-88741221225556-


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             7833277877312699999998853024
Q gi|254780979|r  293 YRYFSEPDLLPLEIDEDFIRAIKKQIPE  320 (500)
Q Consensus       293 YRyfPEPDLPpi~is~e~i~~i~~~lPe  320 (500)
                       |||||||+||+.|++++++.+++++||
T Consensus       298 -rmypetd~~~~~~~~~~~~~~~~~~pe  324 (324)
T 2d6f_C          298 -RMYLETDIPLFRIEDDLLEGIRRNLPE  324 (324)
T ss_dssp             -CEEECTTSCCEECCHHHHHHHHTTCCC
T ss_pred             -CCCCCCCCCCEECCHHHHHHHHHHCCC
T ss_conf             -658999988874688999999985899


No 5  
>>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} (A:378-387,A:511-851)
Probab=100.00  E-value=0  Score=433.78  Aligned_cols=282  Identities=22%  Similarity=0.305  Sum_probs=245.9

Q ss_pred             CCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHH----HHHHHHH-------HHHHHHHHHHHCCCCCCCCCCCCC--
Q ss_conf             6432201125754321376-6678862223540246----5999999-------999999997313980034432337--
Q gi|254780979|r  210 NMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIR----FLGLAIE-------YEARRQIAILEDGGHIRQETRLFD--  275 (500)
Q Consensus       210 ~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~----~i~~AI~-------yEi~RQ~~ll~~G~~v~qETR~~d--  275 (500)
                      .|+.|+.||+.|.|..... ...+.-.+..|.||++    +++.++.       ||+.||--.+..++.+.++++.|+  
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~iN~nSl~v~~~~~E~sl~~~~~~~~yqfeR~gyf~~d~~~~~~~ds~~~~~  119 (351)
T 2hz7_A           40 DDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRYQFERQGYFWRDPVELERVDSREDAL  119 (351)
T ss_dssp             ------------------------CGGGGBCTTSEEEEEEEECGGGGGSCTTCEEEETTTEEEEECHHHHHCC------C
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEEECHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCE
T ss_conf             11233211112332221122344216652588781226348547774499998698888658997677776777999975


Q ss_pred             -------CCCCEEEEEECCCCCCCCCCCCC-----CCCCCCCCCHHHHHH-HHHHCCCCHHHHHHHHHHHC--CCCHHHH
Q ss_conf             -------55433665303566777783327-----787731269999999-88530248368988643202--6889998
Q gi|254780979|r  276 -------PSKNETRSLRTKEDALDYRYFSE-----PDLLPLEIDEDFIRA-IKKQIPELPDAKRERFIGEF--GISLYDA  340 (500)
Q Consensus       276 -------~~~~~T~~mR~KE~a~DYRyfPE-----PDLPpi~is~e~i~~-i~~~lPelP~~~~~rl~~~y--GLs~~dA  340 (500)
                             ...+.|..||.|+.+.||||||+     |||+|..++.++++. ++.++||||+.+. ||+++|  |++.++|
T Consensus       120 vfNrtv~l~~~~~k~~r~Ke~~~d~ry~pe~~~~~P~l~~~~~~~~~~~~~~~~~lPElPe~~~-r~~~~~~lgl~~~~a  198 (351)
T 2hz7_A          120 VFGRIITLKDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDA-EFTRLLGLGASEGDA  198 (351)
T ss_dssp             EEEEEECSSCCC--------------------------------------------------------------------
T ss_pred             EEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHH-HHHHHHCCCCCHHHH
T ss_conf             8877345674121035654444676666543223587786655533045566326899889999-999985689887789


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             88764113678988640243024577776545788764338740006489899999998886387314789999999981
Q gi|254780979|r  341 SVLVSDKSIADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWE  420 (500)
Q Consensus       341 ~~L~~~~~la~~FE~v~~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is~~~aK~il~~l~~  420 (500)
                      .+|++++.+++||+.+..+.+|+.+|||+++||++.||+.+.     +|+|++|++|+.++++|+||.++||+||..|++
T Consensus       199 ~~L~~~~~l~~ffe~v~~~~~~k~~anwi~~el~~~L~~~~~-----~i~~~~laeli~li~~g~Is~~~AK~vl~~~~~  273 (351)
T 2hz7_A          199 RTIARDPALLAFVGGAAPGDTFAQVASWTVNELVAGLRAGEV-----KVRAADLAPLAEGVASGQLSARIAREALARAAA  273 (351)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             988688889999999861687799899999999887256779-----899999999999987496038889999999997


Q ss_pred             CCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf             799988999963987618988999999999983999899752-72132265899999972897788999999999707
Q gi|254780979|r  421 KGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKLG  497 (500)
Q Consensus       421 ~~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK~tkGkAdpk~v~~lL~e~L~  497 (500)
                      ++++|.++|+++||.+++|+++|+.+|++||++||++|++|+ ||++++|||||||||+|+|||||+.|+++|+++|.
T Consensus       274 ~~~~p~~ii~e~gL~~isD~~~l~~iv~~vi~~np~~V~~yk~Gk~ka~~~lvGqVMK~tkGkAdp~~v~~lL~e~Ls  351 (351)
T 2hz7_A          274 SGDAPLTIIEREGLNAGLSAEALQQVVAQVIAANPDKAEAYRGGKTALLGFFTGQVMRATAGKADPQALAAALKDALA  351 (351)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             CCCCHHHHHHHCCCEEECCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf             499989999857983605889999999999997989999986548876667788878962798799999999999749


No 6  
>>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B* (B:297-478)
Probab=100.00  E-value=1.4e-36  Score=289.48  Aligned_cols=178  Identities=44%  Similarity=0.796  Sum_probs=173.7

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             48368988643202688999888764113678988640-24302457777654578876433874000648989999999
Q gi|254780979|r  320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLA-VNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELI  398 (500)
Q Consensus       320 elP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~-~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi  398 (500)
                      |||+++++||+++||||.++|.+|++++.+++||+.+. ...+|+.++||+++++.+.+|+.+.++....++|++|++|+
T Consensus         1 ElP~~~~~rl~~~~gl~~~~a~~l~~~~~l~~~fe~~~~~~~~~~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~l~~l~   80 (182)
T 3h0l_B            1 ELPDQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKEPKGIVNWLINDLLGLLRDKGISIEESPVKPEHLAELV   80 (182)
T ss_dssp             CCHHHHHHHHHHHTCCCHHHHHHHHHSHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHHHHTCCGGGCSSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHH
T ss_conf             98489999999983999889999873167788888887622561156656302677887664897775586999999999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHH
Q ss_conf             8886387314789999999981799988999963987618988999999999983999899752-721322658999999
Q gi|254780979|r  399 DLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMK  477 (500)
Q Consensus       399 ~li~~g~Is~~~aK~il~~l~~~~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK  477 (500)
                      .++++|+||...+|+++..++.++.+|.++|.++||.+++|+++|+.+|++||++||++|++|+ |+++++|||||||||
T Consensus        81 ~lv~~~~it~~~ak~~l~~~~~~~~~~~~~i~~~~l~~~~de~ei~~~v~~vi~~n~~~v~~~~~g~~k~~g~liG~vMk  160 (182)
T 3h0l_B           81 KLIKEKVISTKIGKEVIKEMVETGKTPSQIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVGQVMR  160 (182)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHCC--------------------------------------------
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             99863875277899999999966999999999769950588899999999999979899999977507678779999999


Q ss_pred             HHCCCCCHHHHHHHHHHHHC
Q ss_conf             72897788999999999707
Q gi|254780979|r  478 NTGGKANPSIVQKMLKEKLG  497 (500)
Q Consensus       478 ~tkGkAdpk~v~~lL~e~L~  497 (500)
                      +|+|||||+.|+++|+++|+
T Consensus       161 ~~~Gkad~~~v~~ll~e~L~  180 (182)
T 3h0l_B          161 ETRGKANPQVVNKVIRELVK  180 (182)
T ss_dssp             --------------------
T ss_pred             HHCCCCCHHHHHHHHHHHHH
T ss_conf             86798799999999999984


No 7  
>>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} (C:446-619)
Probab=99.97  E-value=3.5e-32  Score=256.99  Aligned_cols=173  Identities=22%  Similarity=0.377  Sum_probs=157.5

Q ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             83689886432026889998887641136789886402430245777765457887643387400064898999999988
Q gi|254780979|r  321 LPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDL  400 (500)
Q Consensus       321 lP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~l  400 (500)
                      ||+++++||+++||||+++|.+|+++..++.|++.+....+|+.++|||.+++.+..+ .  .++..+++|++|++|+.+
T Consensus         1 LP~~~~~rl~~~ygls~~~a~~L~~~~~~~~f~~~~~~~~~~k~~~~~l~~~l~~l~~-~--~~~~~~i~~~~l~~l~~~   77 (174)
T 2d6f_C            1 LPSEKKERIMRDYGLSEDLASQLVKRNLVDEFEALTEFRVDTTVIASLLAYTLRELRR-E--GHDVDGLGLDELRDAIKL   77 (174)
T ss_dssp             CHHHHHHHHHHTTCCCHHHHHHHHHTTCTTTC--------CCHHHHHTTTTHHHHHTC----------------------
T ss_pred             CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-C--CCCCCCCCHHHHHHHHHH
T ss_conf             9899999999873865778988750576899988875156546677789999999986-6--899777999999999999


Q ss_pred             HHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf             86387314789999999981799988999963987618988999999999983999899752721322658999999728
Q gi|254780979|r  401 IIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTG  480 (500)
Q Consensus       401 i~~g~Is~~~aK~il~~l~~~~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~kgk~ka~gfLvGqVMK~tk  480 (500)
                      +++|+||..++|+++..+++++.+|.++++++|+.++|| ++|+.+|+++|++||++|++|+  ++++|||||||||+|+
T Consensus        78 v~~~~is~~~ak~~l~~~~~~~~~~~~ii~~~~l~~isd-eel~~~v~~vi~~n~~~v~~~k--~k~~g~liG~vMk~t~  154 (174)
T 2d6f_C           78 LEVGKISKDALRDIVACMADEGLAAEDAARKLNLLLLAE-DEIESIIQEIVEGNLDMISERG--MGAMGPLMGQAMGRLR  154 (174)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCH-HHHHHHHHHHHHHCHHHHHHHH--CCCCCCHHHHHHHHHC
T ss_conf             985987579999999999857999999999779912698-9999999999997999999985--8983318999999867


Q ss_pred             CCCCHHHHHHHHHHHHCCC
Q ss_conf             9778899999999970788
Q gi|254780979|r  481 GKANPSIVQKMLKEKLGIK  499 (500)
Q Consensus       481 GkAdpk~v~~lL~e~L~~k  499 (500)
                      |||||+.|+++|+++|+-+
T Consensus       155 G~ad~~~v~~~l~~~L~~~  173 (174)
T 2d6f_C          155 GRADGKVVNRILREKIQER  173 (174)
T ss_dssp             -------------------
T ss_pred             CCCCHHHHHHHHHHHHHHH
T ss_conf             9979999999999999831


No 8  
>>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} (C:457-633)
Probab=99.97  E-value=7.5e-32  Score=254.58  Aligned_cols=172  Identities=24%  Similarity=0.409  Sum_probs=157.8

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             48368988643202688999888764113678988640243024577776545788764338740006489899999998
Q gi|254780979|r  320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELID  399 (500)
Q Consensus       320 elP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~  399 (500)
                      |||+++++||+++|||+.++|.+|+++..++.|++.+....+++.++||+++++.+.+|+.+..    +++|++|++|+.
T Consensus         1 ElP~~~~~rl~~~ygl~~~~a~~L~~~~~~~~f~~~~~~~~~~k~~~~~l~~ei~~~~~~~~~~----~~~~~~l~~l~~   76 (177)
T 1zq1_C            1 ELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEELVSMGVKPSLAASILVVVLKGLRKEVPIE----NVTDEHIREAFQ   76 (177)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHTSTHHHHHHHHHTTCSTTHHHHHHHHTTCC------------------------
T ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHH
T ss_conf             2889999999986489989988775203578899999727884667789999999875217767----899999999999


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             8863873147899999999817-999889999639876189889999999999839998997527213226589999997
Q gi|254780979|r  400 LIIDGTISGKIAKDIFNILWEK-GGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKN  478 (500)
Q Consensus       400 li~~g~Is~~~aK~il~~l~~~-~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~kgk~ka~gfLvGqVMK~  478 (500)
                      ++.+++||..++|++|..++.. +.+|.+++++.++.++|| ++|.++|++||++||+.+..  |+++++|||||||||+
T Consensus        77 ~~~~~~it~~~ak~~l~~~~~~~~~~~~~ii~~~~~~~isd-~el~~~v~~vi~~~~~~~~~--gk~k~~~~lvG~vMk~  153 (177)
T 1zq1_C           77 LYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSE-EEVTRIIEEVIQQNIEVVKA--KGMGAMGLIMGRVMAK  153 (177)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCH-HHHHHHHHHHHHHCHHHHHH--CCCCCCCCHHHHHHHH
T ss_conf             99769146999999999997489989999999679914799-99999999999979999983--4157722459999998


Q ss_pred             HCCCCCHHHHHHHHHHHHCC
Q ss_conf             28977889999999997078
Q gi|254780979|r  479 TGGKANPSIVQKMLKEKLGI  498 (500)
Q Consensus       479 tkGkAdpk~v~~lL~e~L~~  498 (500)
                      |+|||||+.|+++|++.|+-
T Consensus       154 ~~Gkad~~~v~~~lke~L~~  173 (177)
T 1zq1_C          154 VRGKADGKLVSQIVRRKLQE  173 (177)
T ss_dssp             --------------------
T ss_pred             HCCCCCHHHHHHHHHHHHHH
T ss_conf             67996999999999999988


No 9  
>>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B (B:293-411)
Probab=99.92  E-value=3.9e-24  Score=197.76  Aligned_cols=118  Identities=41%  Similarity=0.729  Sum_probs=114.9

Q ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             248368988643202688999888764113678988640-2430245777765457887643387400064898999999
Q gi|254780979|r  319 PELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLA-VNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGEL  397 (500)
Q Consensus       319 PelP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~-~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeL  397 (500)
                      ||||+++++||+++|||+.++|.+|++++.+++|||++. .+.+||.++||+++|+.+.+|+.+.++++++++|++|++|
T Consensus         1 PELP~~~~~Rl~~~ygLs~~~A~~L~~~~~l~~yFe~~~~~~~~~k~~anwi~~el~~~ln~~~~~~~~~~i~~~~la~l   80 (119)
T 3ip4_B            1 PELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGM   80 (119)
T ss_dssp             CCCHHHHHHHHHHTSCCCHHHHHHHTSSHHHHHHHHHHHTTTCCHHHHHHHHHTHHHHHHHHTTCCGGGSSCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf             99879999999987099878755431006778888877643663488999999999887540256444589699999999


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCEE
Q ss_conf             988863873147899999999817999889999639876
Q gi|254780979|r  398 IDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQ  436 (500)
Q Consensus       398 i~li~~g~Is~~~aK~il~~l~~~~~~p~~iie~~gL~~  436 (500)
                      +.++++|+||.++||+||..|+.++++|++||+++||.|
T Consensus        81 i~lv~~~~Is~~~aK~vl~~~~~~~~~~~~iie~~gL~Q  119 (119)
T 3ip4_B           81 IKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQ  119 (119)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHHHCCCHHHHHHTTTCCC
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf             999974974488999999999857999999999759960


No 10 
>>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B (B:412-483)
Probab=99.63  E-value=6.4e-16  Score=137.22  Aligned_cols=63  Identities=32%  Similarity=0.597  Sum_probs=60.4

Q ss_pred             CCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf             18988999999999983999899752-7213226589999997289778899999999970788
Q gi|254780979|r  437 VTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKLGIK  499 (500)
Q Consensus       437 isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK~tkGkAdpk~v~~lL~e~L~~k  499 (500)
                      |||+++|+.+|++||++||++|++|+ |+++++|||||||||+|+|||||+.|+++|+++|+.+
T Consensus         1 IsD~~~l~~lv~evi~~np~~V~~yk~Gk~k~~~~lvGqvMK~t~GkAnp~~v~~il~e~L~~~   64 (72)
T 3ip4_B            1 ISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQELDKR   64 (72)
T ss_dssp             BCCHHHHHHHHHHHHHHCHHHHHHHHTTCSCHHHHHHHHHHHHTTSCBCHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             5899999999999999799999999767687675799999999679879999999999999998


No 11 
>>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} (A:93-148)
Probab=99.02  E-value=7.4e-10  Score=92.58  Aligned_cols=54  Identities=22%  Similarity=0.412  Sum_probs=49.4

Q ss_pred             ECCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf             618988999999999983999899752-72132265899999972897788999999999707
Q gi|254780979|r  436 QVTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKLG  497 (500)
Q Consensus       436 ~isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK~tkGkAdpk~v~~lL~e~L~  497 (500)
                      |+| +++|+.+|+++|+++       + ++++++||+||+||++++|||||+.|+++++++|+
T Consensus         2 qls-deel~~~i~~vi~e~-------~~~~~k~~g~lmg~vm~~~~GraD~~~v~~ivk~~L~   56 (56)
T 1ng6_A            2 QLS-EEELRTIVNETIAEV-------GASSKADMGKVMGAIMPKVKGKADGSLINKLVSSQLS   56 (56)
T ss_dssp             CCC-HHHHHHHHHHHHHHT-------TCCSGGGHHHHHHHHHHHHTTTSCHHHHHHHHHHHCC
T ss_pred             CCC-HHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf             368-589999999999984-------8998256899999999873787888999999998709


No 12 
>>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} (A:378-387,A:511-851)
Probab=91.24  E-value=0.033  Score=36.23  Aligned_cols=113  Identities=12%  Similarity=0.073  Sum_probs=79.7

Q ss_pred             EEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCC-CC------C---CCCCCCCCC
Q ss_conf             8661578612576303652778999999999999986420456764322011257543-21------3---766678862
Q gi|254780979|r  166 IDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVS-VC------R---PGEAWGTRC  235 (500)
Q Consensus       166 vD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVS-i~------~---~~~~~GtRv  235 (500)
                      .+.+..|....+..+.+......+                       .+.++.++|-. ++      .   .+.+.|.|.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~f~~~iN~nSl~v~~~~~E~sl~~~~~~~~y   94 (351)
T 2hz7_A           38 VEDDSAGPAEHEAEPGAGQETAPV-----------------------SQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRY   94 (351)
T ss_dssp             -------------------------------------------------CGGGGBCTTSEEEEEEEECGGGGGSCTTCEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC-----------------------CCCHHHHCCCCCCEEEEEEECHHHHCCCCCCEE
T ss_conf             211123321111233222112234-----------------------421665258878122634854777449999869


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHH--------------------HCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             22354024659999999999999973--------------------1398003443233755433665303566777783
Q gi|254780979|r  236 EVKNVNSIRFLGLAIEYEARRQIAIL--------------------EDGGHIRQETRLFDPSKNETRSLRTKEDALDYRY  295 (500)
Q Consensus       236 EIKNlnS~~~i~~AI~yEi~RQ~~ll--------------------~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRy  295 (500)
                      |+.....|-.-..++.++..|+-.++                    ..+....++|+.||+....+..++.+..+.+|++
T Consensus        95 qfeR~gyf~~d~~~~~~~ds~~~~~vfNrtv~l~~~~~k~~r~Ke~~~d~ry~pe~~~~~P~l~~~~~~~~~~~~~~~~~  174 (351)
T 2hz7_A           95 QFERQGYFWRDPVELERVDSREDALVFGRIITLKDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKA  174 (351)
T ss_dssp             EETTTEEEEECHHHHHCC------CEEEEEECSSCCC-------------------------------------------
T ss_pred             EEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf             88886589976777767779999758877345674121035654444676666543223587786655533045566326


Q ss_pred             CCCCCC
Q ss_conf             327787
Q gi|254780979|r  296 FSEPDL  301 (500)
Q Consensus       296 fPEPDL  301 (500)
                      .||+.=
T Consensus       175 lPElPe  180 (351)
T 2hz7_A          175 QPLTPE  180 (351)
T ss_dssp             ------
T ss_pred             CCCCHH
T ss_conf             899889


No 13 
>>1ltz_A Phenylalanine-4-hydroxylase; oxidoreductase, dihydrobiopterin, bacterial enzyme; HET: HBI; 1.40A {Chromobacterium violaceum} (A:59-168)
Probab=66.99  E-value=4.6  Score=20.47  Aligned_cols=45  Identities=22%  Similarity=0.405  Sum_probs=35.3

Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf             336653035667777833277877312699999998853024836898864320268
Q gi|254780979|r  279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI  335 (500)
Q Consensus       279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL  335 (500)
                      -.|..+|..+.-   -|-||||+         +-++---.|.|-+.....|...||.
T Consensus        59 p~t~~iR~~~~~---~YtpEPDi---------~He~~GHvP~L~~p~fA~f~q~~G~  103 (110)
T 1ltz_A           59 PVTWWLREPHQL---DYLQEPDV---------FHDLFGHVPLLINPVFADYLEAYGK  103 (110)
T ss_dssp             EEECSCCCTTCS---SSCCSCCH---------HHHHHHTGGGGGSHHHHHHHHHHHH
T ss_pred             CCCCEECCCCCC---CCCCCCHH---------HHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             552332687635---56888368---------9987456854368679999999978


No 14 
>>2v27_A Phenylalanine hydroxylase; cold adaptation, tetrahydrobiopterin, stability, flexibility, alkaptonuria, oxidoreductase; 1.50A {Colwellia psychrerythraea 34H} PDB: 2v28_A (A:42-149)
Probab=66.86  E-value=4.6  Score=20.44  Aligned_cols=45  Identities=22%  Similarity=0.479  Sum_probs=35.5

Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf             336653035667777833277877312699999998853024836898864320268
Q gi|254780979|r  279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI  335 (500)
Q Consensus       279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL  335 (500)
                      -.|..+|..+.-   -|-||||+         +-++---+|.|-+.....|...||.
T Consensus        60 p~t~~iR~~~~~---~YtpEPDi---------fHe~~GHvPlL~~p~FA~f~q~~G~  104 (108)
T 2v27_A           60 PVATFIRSREEM---DYLQEPDI---------FHEIFGHCPLLTNSSFANYTEAYGK  104 (108)
T ss_dssp             EEECCCCCSTTT---TCCSSCCH---------HHHHHHTGGGGGSHHHHHHHHHHHH
T ss_pred             CCEEECCCCCCC---CCCCCHHH---------HHHHHCCCHHHCCHHHHHHHHHHHH
T ss_conf             210001573423---55642448---------9998674263189899999999999


No 15 
>>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, pterin CO-substrate; 2.30A {Rattus norvegicus} (A:113-203,A:283-298)
Probab=54.70  E-value=5.2  Score=20.06  Aligned_cols=52  Identities=23%  Similarity=0.348  Sum_probs=36.2

Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC---CCHHHHHH
Q ss_conf             33665303566777783327787731269999999885302483689886432026---88999888
Q gi|254780979|r  279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFG---ISLYDASV  342 (500)
Q Consensus       279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yG---Ls~~dA~~  342 (500)
                      -.|..+|..+.-   -|.||||+         +-++---+|.|-+.....|..+||   |.-.||+-
T Consensus        43 p~t~~IR~~~~~---~YtpEPDi---------fHElfGHvPlLa~p~FA~f~q~~G~~~L~~~~~~~   97 (107)
T 1toh_A           43 QCTQYIRHASSP---MHSPEPDC---------CHELLGHVPMLADRTFAQFSQDIGLASLGFNDAKD   97 (107)
T ss_dssp             EECCCCCCTTCT---TCCSSCCH---------HHHHHHTHHHHTSHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CEEEEECCCCCC---CCCCCHHH---------HHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             224430366666---66764238---------99985656300898999999999998873999999


No 16 
>>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus} (A:207-229,A:366-500)
Probab=49.22  E-value=17  Score=16.28  Aligned_cols=20  Identities=15%  Similarity=0.283  Sum_probs=6.8

Q ss_pred             HHHHHHHHHCCCCHHHHHHH
Q ss_conf             89886432026889998887
Q gi|254780979|r  324 AKRERFIGEFGISLYDASVL  343 (500)
Q Consensus       324 ~~~~rl~~~yGLs~~dA~~L  343 (500)
                      +-+..++..||+|+.+|+.+
T Consensus        82 eAk~~L~~~f~lse~QAeAI  101 (158)
T 2inr_A           82 DAKENLIEVYEFTEEQAEAI  101 (158)
T ss_dssp             HHHHHHHTTSSCCHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHH
T ss_conf             99999887259999999999


No 17 
>>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer, psychrophilic bacteria, crystallography, hydrolase; 1.40A {Vibrio SP} (A:367-454)
Probab=46.38  E-value=19  Score=15.98  Aligned_cols=33  Identities=18%  Similarity=0.403  Sum_probs=28.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             000648989999999888638731478999999
Q gi|254780979|r  384 IEDTPISPNQLGELIDLIIDGTISGKIAKDIFN  416 (500)
Q Consensus       384 ~~~~~i~p~~laeLi~li~~g~Is~~~aK~il~  416 (500)
                      ++...-+|+.|+++|+.-.+=+||..+|+.||.
T Consensus        12 ldk~~qTp~~la~iVN~nS~F~It~~QA~~Vl~   44 (88)
T 3e2d_A           12 LDKSLQTPEKLAEIVNKNSEFPITAEQAKNVLA   44 (88)
T ss_dssp             SCGGGCCHHHHHHHHHHHCSSCCCHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             343455435667776522587777888877652


No 18 
>>1mlw_A Tryptophan 5-monooxygenase; aromatic amino acid hydroxylase catalytic domain fold, oxidoreductase; HET: HBI; 1.71A {Homo sapiens} (A:1-60,A:113-198,A:277-301)
Probab=44.06  E-value=9.6  Score=18.08  Aligned_cols=43  Identities=28%  Similarity=0.445  Sum_probs=29.1

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf             3665303566777783327787731269999999885302483689886432026
Q gi|254780979|r  280 ETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFG  334 (500)
Q Consensus       280 ~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yG  334 (500)
                      .|..+|+.+.-   -|-||||+         +-++---+|.|-+.....|...||
T Consensus        99 ~Tq~IR~~e~~---dYtpEPDi---------fHEvfGHvPlLadP~FAdF~q~~G  141 (171)
T 1mlw_A           99 CTQYVRHSSDP---FYTPEPDT---------CHELLGHVPLLAEPSFAQFSQEIG  141 (171)
T ss_dssp             ECCCCCCTTCT---TCCSSCCH---------HHHHHHTHHHHTSHHHHHHHHHHH
T ss_pred             CCCEECCCCCC---CCCCCCCH---------HHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             50134789988---87899951---------555545560118989999999999


No 19 
>>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} (A:132-406)
Probab=43.14  E-value=8.2  Score=18.59  Aligned_cols=45  Identities=24%  Similarity=0.458  Sum_probs=33.7

Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf             336653035667777833277877312699999998853024836898864320268
Q gi|254780979|r  279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI  335 (500)
Q Consensus       279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL  335 (500)
                      -.|..+|+.+.-   -|-||||+         +-++---+|.|-+.....|...||+
T Consensus       133 p~t~~iR~~~~~---~YtpEPDi---------~He~~GH~PlLa~p~fA~f~q~~G~  177 (275)
T 1phz_A          133 HCTQYIRHGSKP---MYTPEPDI---------CHELLGHVPLFSDRSFAQFSQEIGL  177 (275)
T ss_dssp             EECCCCCCTTCT---TCCSSCCH---------HHHHHHTHHHHTSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCC---CCCCCCCC---------HHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             135333266545---55789961---------4455456722179999999999999


No 20 
>>1tme_2 Theiler'S murine encephalomyelitis virus (subunit VP2); icosahedral virus; 2.80A {Theiler} PDB: 1tmf_2 2mev_2 1mec_2 (2:)
Probab=42.69  E-value=11  Score=17.53  Aligned_cols=77  Identities=17%  Similarity=0.253  Sum_probs=42.3

Q ss_pred             CCEEEEEEEEEEECCCCCCCCCCCC-----CC--C-CCCC---CCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEEC
Q ss_conf             0338989997888689865558842-----46--8-9876---5206130268988873789999999998778297624
Q gi|254780979|r   22 WEVVIGIEVHAQLSVVSKLFSGASV-----NF--G-AEPN---TQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHIN   90 (500)
Q Consensus        22 ~e~vIGLEiH~qL~t~tKlFc~c~~-----~~--~-~~pN---t~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~   90 (500)
                      |=.-.|.+||||.|+ +|-.++|--     +|  + ...|   ....|...+..=.-+                 +-...
T Consensus       104 ~l~R~G~~V~VQcNa-SkFH~G~LlV~~vPE~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~  165 (267)
T 1tme_2          104 YLCKTGWRVQVQCNA-SQFHAGSLLVFMAPEFYTGKGTKTGDMEPTDPFTMDTTWRAP-----------------QGAPT  165 (267)
T ss_dssp             EEEEEEEEEEEECCC-CTTCEEEEEEEEEETCCCCCEECTTTSSEECTTSCCSSCBCC-----------------CSSCC
T ss_pred             HHHCCCEEEEEEECC-CHHHCEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCEECC-----------------CCCCC
T ss_conf             756087299999679-834200687898054685355677774325655556510057-----------------77756


Q ss_pred             CCCEEECCCEECCCCCCCCCCCCCCC
Q ss_conf             42013113212376788820144544
Q gi|254780979|r   91 KYSVFARKNYFYPDLPQGYQISQHDK  116 (500)
Q Consensus        91 ~~~~fdRK~YfYpDlpkgyQiTQ~~~  116 (500)
                      ....+..++|+.+|-..=+|.|.|.+
T Consensus       166 ~~~~~~~~~~~~~~g~~~~~~t~fPH  191 (267)
T 1tme_2          166 GYRYDSRTGFFAMNHQNQWQWTVYPH  191 (267)
T ss_dssp             CCCSSSCCSSCBTTCCCGGGGGGSSE
T ss_pred             CCCCCCCCCEECCCCCCCCCCCCCCH
T ss_conf             62013565412157744161010573


No 21 
>>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* (A:183-206,A:342-476)
Probab=41.36  E-value=22  Score=15.44  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=14.4

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             999998853024836898864320268899988876
Q gi|254780979|r  309 DFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLV  344 (500)
Q Consensus       309 e~i~~i~~~lPelP~~~~~rl~~~yGLs~~dA~~L~  344 (500)
                      +.|+-||.+  +.+.+-+..++..||+|+.+|+.++
T Consensus        70 eVI~iIR~S--~~~~eAk~~L~~~f~lse~QAeAIL  103 (159)
T 2nov_A           70 EVIALIRAS--ENKADAKENLKVSYDFTEEQAEAIV  103 (159)
T ss_dssp             HHHHHHTTS--SSHHHHHSSCCC-CCCCHHHHHHHH
T ss_pred             HHHHHHHCC--CCHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             567887617--9768999999986599999999999


No 22 
>>3d37_A Tail protein, 43 kDa; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.10A {Neisseria meningitidis MC58} (A:212-276)
Probab=41.30  E-value=22  Score=15.44  Aligned_cols=23  Identities=13%  Similarity=0.013  Sum_probs=20.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             76303652778999999999999
Q gi|254780979|r  177 EIVTKPDMRSSLEAKAFLTKLRS  199 (500)
Q Consensus       177 EIVT~Pd~~s~~ea~~~~~~l~~  199 (500)
                      -||+++|..|.++|...++|+..
T Consensus        38 ~ivv~~D~~n~~~~~~rArK~la   60 (65)
T 3d37_A           38 KTVVVSDADNLAALQKQAKKQLA   60 (65)
T ss_dssp             EEEECCC--CHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
T ss_conf             38954788999999999999999


No 23 
>>1tc5_A Probable eukaryotic D-amino acid tRNA deacylase, LMAJ005534AAA; SGPP, structural genomics, PSI, protein structure initiative; 1.93A {Leishmania major} (A:)
Probab=38.47  E-value=24  Score=15.13  Aligned_cols=46  Identities=9%  Similarity=-0.014  Sum_probs=38.3

Q ss_pred             ECCCCCC---HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             0365277---899999999999998642045676432201125754321376
Q gi|254780979|r  180 TKPDMRS---SLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG  228 (500)
Q Consensus       180 T~Pd~~s---~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~  228 (500)
                      ..|+++.   |++|..+-.++-..+|..++.+.   .|.+..|.+||+-..|
T Consensus       109 ~rPsF~~Aa~~~~A~~ly~~f~~~lr~~~~~v~---tG~Fga~M~v~l~NdG  157 (194)
T 1tc5_A          109 RSVQFHQLVAKDVGAALYDRFCHFVRVARGVDE---SRVDANGAPRSEGDAP  157 (194)
T ss_dssp             TEEECTTBCCHHHHHHHHHHHHHHHHHHTTCCT---TSBCTTSSBSSGGGSC
T ss_pred             CCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCC
T ss_conf             998811319968999999999999987616442---1101122221110011


No 24 
>>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate facial triad, tetrahydrobiopterin, oxidoreductase; HET: H4B; 1.50A {Homo sapiens} (A:1-305)
Probab=38.38  E-value=11  Score=17.71  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=37.3

Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-----CHHHHHHHH
Q ss_conf             336653035667777833277877312699999998853024836898864320268-----899988876
Q gi|254780979|r  279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI-----SLYDASVLV  344 (500)
Q Consensus       279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL-----s~~dA~~L~  344 (500)
                      -.|..+|..+.-   -|-||||+         +-++---+|.|-+.....|..+||+     ++++...|.
T Consensus       162 p~TqyIRh~~~p---~YtpEPDi---------~HEl~GHvPlLadp~FA~f~q~~G~~~l~a~~~~i~~La  220 (305)
T 1j8u_A          162 HCTQYIRHGSKP---MYTPEPDI---------CHELLGHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLA  220 (305)
T ss_dssp             EECCCCCCTTCT---TCCSSCCH---------HHHHHHTHHHHTSHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCCEECCCCCC---CCCCCCCH---------HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             441232688777---77899951---------545545572217999999999999988558876899852


No 25 
>>1d4m_2 Protein (coxsackievirus A9); picornavirus structure, RGD, uncoating, virus-receptor interaction, WIN compound, virus/viral protein; HET: MYR W71; 2.90A {Human coxsackievirus A9} PDB: 1mqt_B* 1oop_B* 1h8t_B* 1upn_B 1m11_2 1cov_2* 1jew_2 1ev1_2* 2c8i_B (2:)
Probab=36.66  E-value=18  Score=16.07  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=19.0

Q ss_pred             CEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             338989997888689865558842
Q gi|254780979|r   23 EVVIGIEVHAQLSVVSKLFSGASV   46 (500)
Q Consensus        23 e~vIGLEiH~qL~t~tKlFc~c~~   46 (500)
                      =.-.|.+||||.|+ +|-.++|--
T Consensus       101 l~R~G~~V~VQcNa-SkFH~G~Ll  123 (261)
T 1d4m_2          101 LGRAGYTIHVQCNA-SKFHQGCLL  123 (261)
T ss_dssp             EEEEEEEEEEECCC-CTTCEEEEE
T ss_pred             EECCCCEEEEEECC-CCCCHHEEE
T ss_conf             32488189999579-914611499


No 26 
>>2qj8_A MLR6093 protein; NP_106651.1, uncharacterized protein MLR6093, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Mesorhizobium loti MAFF303099} (A:146-332)
Probab=35.67  E-value=27  Score=14.83  Aligned_cols=47  Identities=19%  Similarity=0.167  Sum_probs=38.8

Q ss_pred             EECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             66157861257630365277899999999999998642045676432
Q gi|254780979|r  167 DLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEE  213 (500)
Q Consensus       167 D~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~mee  213 (500)
                      .++|+|+|-+=+=..---.+++.+...++-+.+.|+++|+-+++.+.
T Consensus        49 a~~~~Gip~it~E~G~~~~~~~~v~~~~~gi~~vL~~lgii~~~~~~   95 (187)
T 2qj8_A           49 LVHRQGKTFICTEFGGGVVSAEALTIYEAGVRNGLIALGLVKGKAEY   95 (187)
T ss_dssp             HTTTTCCEEEEEEEECC------CHHHHHHHHHHHHHTTSBCSCC--
T ss_pred             EHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             01313962556640476068899999999999999972655555556


No 27 
>>1ncq_B Coat protein VP2; HRV, pleconaril, icosahedral virus; HET: W11; 2.50A {Human rhinovirus 14} (B:)
Probab=33.44  E-value=20  Score=15.81  Aligned_cols=78  Identities=15%  Similarity=0.071  Sum_probs=42.4

Q ss_pred             CEEEEEEEEEEECCCCCCCCCCCCCC-------CCCCCCCC-CHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCE
Q ss_conf             33898999788868986555884246-------89876520-61302689888737899999999987782976244201
Q gi|254780979|r   23 EVVIGIEVHAQLSVVSKLFSGASVNF-------GAEPNTQV-SFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSV   94 (500)
Q Consensus        23 e~vIGLEiH~qL~t~tKlFc~c~~~~-------~~~pNt~v-~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~   94 (500)
                      =.-.|++||||.|+ +|-.++|---+       +..+.+++ ..+-..+||.--.               .--.-...-.
T Consensus       101 l~R~g~~v~VQ~Na-s~Fh~G~Llv~~vPE~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~  164 (262)
T 1ncq_B          101 LGRSGYTVHVQCNA-TKFHSGCLLVVVIPEHQLASHEGGNVSVKYTFTHPGERGI---------------DLSSANEVGG  164 (262)
T ss_dssp             EEEEEEEEEEECCC-CTTCEEEEEEEEEETCCCCBTTCTTCCCCGGGGCCGGGCE---------------ETTSCCCTTC
T ss_pred             HHCCCEEEEEEECC-CHHHHHEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCC---------------CCCCCCCCCC
T ss_conf             56087299999668-8542014768980567741457887233332368874443---------------2234444588


Q ss_pred             EECCCEECCCCCCCCCCCCCCC
Q ss_conf             3113212376788820144544
Q gi|254780979|r   95 FARKNYFYPDLPQGYQISQHDK  116 (500)
Q Consensus        95 fdRK~YfYpDlpkgyQiTQ~~~  116 (500)
                      ++.++|+.++--.=+|.|+|-+
T Consensus       165 ~~~~~~~~~~~~~~~~~t~~PH  186 (262)
T 1ncq_B          165 PVKDVLYNMNGTLLGNLLIFPH  186 (262)
T ss_dssp             BCCCGGGTTTTBCGGGGGGSSE
T ss_pred             CCCCEEECCCCEEEHHHCCCCH
T ss_conf             5443036469878526203566


No 28 
>>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* (A:1-74,A:192-245)
Probab=31.89  E-value=30  Score=14.41  Aligned_cols=87  Identities=29%  Similarity=0.480  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC--------HHHHHHHHHHH
Q ss_conf             1367898864024302457777654578876433874000648989999999888638731--------47899999999
Q gi|254780979|r  347 KSIADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTIS--------GKIAKDIFNIL  418 (500)
Q Consensus       347 ~~la~~FE~v~~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is--------~~~aK~il~~l  418 (500)
                      ..+++.|+.+.....-..... ++.++++            .++|+++...+-|+. |+|.        ....-+.+..-
T Consensus        24 a~LA~~fe~IEaTSSRLeii~-iLAnlLr------------sl~PeDL~~vVYLl~-GkI~P~yE~~~~~~~~~~~~~~~   89 (128)
T 2hiv_A           24 KVIAEYFDKLEKISSRLQLTA-LLADLLS------------KSDKTIIDKVVYIIQ-GKLWPDFLVGIGDATVLDAMAIA   89 (128)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHH-HHHHHHH------------TSCGGGHHHHHHHTT-TCSSCGGGCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHH-HHHHHHH------------HCCHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             999999999997228899999-9999998------------589277899999973-99885557684588999999998


Q ss_pred             HHCCCCHHHHHHH-CCCEECCCHHHHHHHHHH
Q ss_conf             8179998899996-398761898899999999
Q gi|254780979|r  419 WEKGGTPKEIVEE-LGLRQVTDLSAIEKVVDE  449 (500)
Q Consensus       419 ~~~~~~p~~iie~-~gL~~isD~~eL~~iv~e  449 (500)
                      +.++.+..+||++ .+|.  .|.+.|.+++-+
T Consensus        90 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  119 (128)
T 2hiv_A           90 FGGGQSASEIIERAYNLR--ADLGNIAKIIVE  119 (128)
T ss_dssp             HSSSGGGHHHHHHHHHHS--CCHHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHHHCCC--CCCHHHHHHHHC
T ss_conf             625898899999996005--891568999861


No 29 
>>1aym_2 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} PDB: 1ayn_2* 1ncr_B* 1nd2_B* 1nd3_B* 1qju_2* 1qjx_2* 1qjy_2* 1c8m_2* 1d3e_2 1r1a_2* 2hwd_2* 2hwe_2* 2hwf_2* 1fpn_2* 1v9u_2* 3dpr_B* (2:)
Probab=28.93  E-value=26  Score=14.91  Aligned_cols=79  Identities=14%  Similarity=0.090  Sum_probs=47.0

Q ss_pred             CEEEEEEEEEEECCCCCCCCCCCC-----CC--CCCCCCC-CCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCE
Q ss_conf             338989997888689865558842-----46--8987652-061302689888737899999999987782976244201
Q gi|254780979|r   23 EVVIGIEVHAQLSVVSKLFSGASV-----NF--GAEPNTQ-VSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSV   94 (500)
Q Consensus        23 e~vIGLEiH~qL~t~tKlFc~c~~-----~~--~~~pNt~-v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~   94 (500)
                      =.-.|.+||||.|+ +|--++|--     |+  +...+.. ........||.--              --.+..-.....
T Consensus       101 l~R~G~~VhVQcNa-SkFHqG~LlV~~VPE~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~  165 (261)
T 1aym_2          101 LGRSGYTVHVQCNA-SKFHQGTLLVVMIPEHQLATVNKGNVNAGYKYTHPGEAG--------------REVGTQVENEKQ  165 (261)
T ss_dssp             EEEEEEEEEEECCC-CTTCEEEEEEEEEETCCCCCBSSTTCCCCGGGGCCGGGC--------------EETTTSCCCTTC
T ss_pred             HHHCCEEEEEEECC-CHHHCEEEEEEEECCEEECCCCCCCCCCCCCCCCCCCCC--------------CCCCCCCCCCCC
T ss_conf             77288499999769-843210798999144666256778734321006876677--------------310431125566


Q ss_pred             EECCCEECCCCCCCCCCCCCCC
Q ss_conf             3113212376788820144544
Q gi|254780979|r   95 FARKNYFYPDLPQGYQISQHDK  116 (500)
Q Consensus        95 fdRK~YfYpDlpkgyQiTQ~~~  116 (500)
                      +++++|+-.+-..=+|.|.|-+
T Consensus       166 ~~~~~~~~~~g~~~~~lt~fPH  187 (261)
T 1aym_2          166 PSDDNWLNFDGTLLGNLLIFPH  187 (261)
T ss_dssp             CCCCGGGTTTTBCGGGGGGSSE
T ss_pred             CCCCCEECCCCEEECCEEEEEE
T ss_conf             4645315348876513457511


No 30 
>>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structure initiative; 2.27A {Escherichia coli K12} (A:)
Probab=26.73  E-value=10  Score=17.81  Aligned_cols=40  Identities=13%  Similarity=0.176  Sum_probs=32.4

Q ss_pred             HHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             97313980034432337554336653035667777833277877312699
Q gi|254780979|r  259 AILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDE  308 (500)
Q Consensus       259 ~ll~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~  308 (500)
                      .+.+.|-.+..++|.||-  |.+++++        .|||+.|+|.|.|+-
T Consensus       104 ~l~~~g~~~~~~~~~lDH--G~~vPL~--------~~~~~~~iPvV~is~  143 (271)
T 2pw6_A          104 LLAPIPVTLDKEAWGFDH--GSWGVLI--------KXYPDADIPXVQLSI  143 (271)
T ss_dssp             HHTTSCEEEESSCCCCCH--HHHHHHH--------HHSTTCCSCEEEEEE
T ss_pred             HHCCCCCCCCCCCCCCCC--CCCEEEE--------EECCCCCCCEEEEEC
T ss_conf             623578400577766544--5402357--------844777843699844


No 31 
>>2bbk_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 1.75A {Paracoccus denitrificans} (H:195-300)
Probab=26.20  E-value=36  Score=13.86  Aligned_cols=43  Identities=9%  Similarity=0.223  Sum_probs=22.5

Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE-----------EEEEEEEEEEEE
Q ss_conf             7888201445442015338999706777774103-----------798423666520
Q gi|254780979|r  105 LPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRT-----------IEVGIERIHLEQ  150 (500)
Q Consensus       105 lpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~-----------~~v~I~~i~lEE  150 (500)
                      -|.|||+..+..+   .|.|-+-...+..+..+.           .+=+|.||.||+
T Consensus        53 rPGG~Q~~A~~~~---~~rlyvLMh~g~~~sHkdpgteVWv~D~~t~krv~ri~L~h  106 (106)
T 2bbk_H           53 RPGGWQQVAYHRA---LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH  106 (106)
T ss_dssp             EECSSSCEEEETT---TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred             CCCCEEEEEECCC---CCEEEEEECCCCCEEECCCCCCEEEEECCCCCEEEEECCCC
T ss_conf             2562178897378---85688870688716870589714778679995989974899


No 32 
>>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} (H:212-318)
Probab=25.79  E-value=38  Score=13.67  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=13.9

Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             7888201445442015338999706
Q gi|254780979|r  105 LPQGYQISQHDKPIVGEGKVSVSIG  129 (500)
Q Consensus       105 lpkgyQiTQ~~~Pi~~~G~l~~~~~  129 (500)
                      -|.|||+..+..+   .|.|-+-..
T Consensus        54 rPgG~Q~~A~~~~---~~~lyvLMh   75 (107)
T 2mad_H           54 RPGGWQQVAYLKS---SDGIYLLTS   75 (107)
T ss_pred             CCCCEEEEEECCC---CCEEEEEEC
T ss_conf             4652056887389---976999633


No 33 
>>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} (A:1-83,A:454-489)
Probab=25.46  E-value=39  Score=13.63  Aligned_cols=19  Identities=21%  Similarity=0.265  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9888764113678988640
Q gi|254780979|r  339 DASVLVSDKSIADYFEKLA  357 (500)
Q Consensus       339 dA~~L~~~~~la~~FE~v~  357 (500)
                      +....+.|++|+-+||..-
T Consensus        62 ~vk~~i~DpdLarLFENcf   80 (119)
T 2p0v_A           62 HIKQLLTNAKLAWXFENCF   80 (119)
T ss_dssp             HHHHHCCCHHHHHHHHHHT
T ss_pred             HHHHHHCCHHHHHHHHHHC
T ss_conf             9998715988999999866


No 34 
>>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} (H:265-370)
Probab=25.33  E-value=39  Score=13.62  Aligned_cols=43  Identities=14%  Similarity=0.296  Sum_probs=21.7

Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE-----------EEEEEEEEEEEE
Q ss_conf             7888201445442015338999706777774103-----------798423666520
Q gi|254780979|r  105 LPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRT-----------IEVGIERIHLEQ  150 (500)
Q Consensus       105 lpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~-----------~~v~I~~i~lEE  150 (500)
                      -|.|||+..+..+   .|.|-+-...+..+..+.           .+=+|.||.||+
T Consensus        53 rPGG~Q~~A~~~~---~~rlyvLMh~g~~~tHkdpgteVWv~D~~t~krv~ri~L~h  106 (106)
T 3c75_H           53 RPGGWQQTAYHRQ---SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH  106 (106)
T ss_dssp             EECSSSCEEEEGG---GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred             CCCCCEEEEECCC---CCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEECCCC
T ss_conf             5887067898479---99799995588742005899879999999997998954899


No 35 
>>3cji_C Polyprotein; virus capsid protein structure, ATP-binding, cytoplasm, cytoplasmic vesicle, helicase, hydrolase, membrane, nucleotide-binding; 2.30A {Seneca valley virus} (C:)
Probab=25.24  E-value=33  Score=14.13  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=18.5

Q ss_pred             CCEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             0338989997888689865558842
Q gi|254780979|r   22 WEVVIGIEVHAQLSVVSKLFSGASV   46 (500)
Q Consensus        22 ~e~vIGLEiH~qL~t~tKlFc~c~~   46 (500)
                      |=.-.|.+||||.|+ ||--++|--
T Consensus       109 ~l~R~G~~VhVQcNa-SkFHqG~Ll  132 (284)
T 3cji_C          109 FLMKCGWQVQVQCNL-TQFHQGALL  132 (284)
T ss_dssp             EEEEEEEEEEEECCC-CTTCEEEEE
T ss_pred             HHHCCCEEEEEEECC-CHHCCCEEE
T ss_conf             755088399999679-822110587


No 36 
>>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} (A:)
Probab=23.67  E-value=42  Score=13.40  Aligned_cols=105  Identities=12%  Similarity=0.072  Sum_probs=50.3

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             8988643202688999888764113678988640243---------0245777765457887643387400064898999
Q gi|254780979|r  324 AKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNR---------DKKIVANWVINDLLGVLNRSGKSIEDTPISPNQL  394 (500)
Q Consensus       324 ~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~~~~---------~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~l  394 (500)
                      +.+..|.+--|+-+.-|..|++.-...++.+++....         =.+.+|.-|+.+|...+.+..  .......+..+
T Consensus        69 ~~F~~L~~V~GIGpk~Al~iL~~~~~~el~~aI~~~d~~~L~~ipGIG~KtA~rIi~eLk~k~~~~~--~~~~~~~~~~~  146 (191)
T 1ixr_A           69 ALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGKVPPHL--LAGEKVESEAA  146 (191)
T ss_dssp             HHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTTSCSCC-------------
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCH
T ss_conf             9999985758847788999985599999999998289998513888456889999999986425210--01123355568


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHCC--CCHHHHHH
Q ss_conf             9999888638731478999999998179--99889999
Q gi|254780979|r  395 GELIDLIIDGTISGKIAKDIFNILWEKG--GTPKEIVE  430 (500)
Q Consensus       395 aeLi~li~~g~Is~~~aK~il~~l~~~~--~~p~~iie  430 (500)
                      .+++..+.+=-.+...++.++..+...+  .+.++++.
T Consensus       147 ~e~~~aL~~LGy~~~ea~~ai~~~~~~~~~~~~e~li~  184 (191)
T 1ixr_A          147 EEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIK  184 (191)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             99999999869999999999999984299999999999


No 37 
>>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli} (A:317-427)
Probab=23.55  E-value=42  Score=13.38  Aligned_cols=14  Identities=21%  Similarity=0.529  Sum_probs=5.1

Q ss_pred             HHCCCCHHHHHHHH
Q ss_conf             20268899988876
Q gi|254780979|r  331 GEFGISLYDASVLV  344 (500)
Q Consensus       331 ~~yGLs~~dA~~L~  344 (500)
                      ..||+++.+|+.++
T Consensus        63 ~~~~lse~QaeaIL   76 (111)
T 1zvu_A           63 SRFGLTETQAEAIL   76 (111)
T ss_dssp             HSTTCCTTHHHHHH
T ss_pred             HHCCCCHHHHHHHH
T ss_conf             86488777899999


No 38 
>>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus WR} (A:)
Probab=23.45  E-value=26  Score=14.93  Aligned_cols=12  Identities=33%  Similarity=0.794  Sum_probs=7.5

Q ss_pred             EEECCCEECCCC
Q ss_conf             131132123767
Q gi|254780979|r   94 VFARKNYFYPDL  105 (500)
Q Consensus        94 ~fdRK~YfYpDl  105 (500)
                      +=-||+|||+-+
T Consensus        64 SKgrkQYfYGk~   75 (77)
T 1vcc_A           64 SKGRRQYFYGKM   75 (77)
T ss_dssp             TTSCEEEEECTT
T ss_pred             CCCCEEEEEECC
T ss_conf             888357877213


No 39 
>>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} (A:141-305)
Probab=22.88  E-value=43  Score=13.29  Aligned_cols=95  Identities=21%  Similarity=0.232  Sum_probs=48.5

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             67898864024302457777654578876433874000648989999999888638731478999999998179998899
Q gi|254780979|r  349 IADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEI  428 (500)
Q Consensus       349 la~~FE~v~~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~i  428 (500)
                      +..+.|.+..-..-++.-+.+..++-|+|..+++--.-++..|..|-.|++-+ .+.||++.|--+++.|.      .-+
T Consensus        40 ~~~lle~~k~l~s~~llkkv~~k~legylacreller~sk~e~k~ff~lfdqv-~ntitg~daflliq~~~------riv  112 (165)
T 2gno_A           40 LSGLXESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVESKEFFALFDQV-TNTITGKDAFLLIQRLT------RII  112 (165)
T ss_dssp             HHHHHHHHHHSCHHHHTTTTTCSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHH-HHHSCTHHHHHHHHHHH------HHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH-HHHCCCCCHHHHHHHHH------HHH
T ss_conf             65728898888899999999863544657799999998676889999999999-98561868999999999------999


Q ss_pred             HHHCCCEECCCHHHHHHHHHHHH
Q ss_conf             99639876189889999999999
Q gi|254780979|r  429 VEELGLRQVTDLSAIEKVVDEVI  451 (500)
Q Consensus       429 ie~~gL~~isD~~eL~~iv~eVI  451 (500)
                      ..++++..+.| ..--...+.|+
T Consensus       113 lhen~we~~~~-q~~vsfldsil  134 (165)
T 2gno_A          113 LHENTWESVED-QKSVSFLDSIL  134 (165)
T ss_dssp             HHTSCCCSHHH-HHHHHHHHHHH
T ss_pred             HHHHCHHHHHH-HHHHHHHHHHH
T ss_conf             86004304789-99999999999


No 40 
>>2ajt_A L-arabinose isomerase; arabinose catabolism, carbohydrate metabolism, structural genomics, PSI, protein structure initiative; 2.60A {Escherichia coli} (A:1-174)
Probab=22.35  E-value=44  Score=13.22  Aligned_cols=30  Identities=23%  Similarity=0.149  Sum_probs=14.8

Q ss_pred             ECCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             615786125763036527789999999999
Q gi|254780979|r  168 LNRSGVALMEIVTKPDMRSSLEAKAFLTKL  197 (500)
Q Consensus       168 ~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l  197 (500)
                      +|-.|.--+|||..|-+.|++++.++++++
T Consensus        38 l~~~~~~~~~iv~~g~v~t~~~~~~~~~~~   67 (174)
T 2ajt_A           38 LNTEAKLPCKLVLKPLGTTPDEITAICRDA   67 (174)
T ss_dssp             HHHHSCCSSEEEECCCBCSHHHHHHHHHHH
T ss_pred             HHCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             603578843797246517999999999971


No 41 
>>2vj4_A Protein MXIC, MXIC; secretion regulation, transport protein, T3SS, plasmid, virulence, transport, type three secretion system; HET: MLY; 2.50A {Shigella flexneri} PDB: 2vix_A* 2vj5_A (A:92-170)
Probab=21.92  E-value=11  Score=17.52  Aligned_cols=26  Identities=12%  Similarity=0.128  Sum_probs=17.5

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             77778332778773126999999988
Q gi|254780979|r  290 ALDYRYFSEPDLLPLEIDEDFIRAIK  315 (500)
Q Consensus       290 a~DYRyfPEPDLPpi~is~e~i~~i~  315 (500)
                      -.-||=|-|-|+|++.+-++||++.-
T Consensus        30 R~~Yr~Fl~~d~~~~~~Y~~Wi~e~g   55 (79)
T 2vj4_A           30 RACYRGFIMGNISTTDQYIEWLGNFG   55 (79)
T ss_dssp             HHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf             99999998488779999999999839


No 42 
>>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} (A:262-345,A:463-553)
Probab=21.64  E-value=45  Score=13.12  Aligned_cols=65  Identities=26%  Similarity=0.244  Sum_probs=39.5

Q ss_pred             CCEEEEEEEEEEECCCCCCCCCCCCCCCC------CCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEE
Q ss_conf             03389899978886898655588424689------876520613026898887378999999999877829762442013
Q gi|254780979|r   22 WEVVIGIEVHAQLSVVSKLFSGASVNFGA------EPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVF   95 (500)
Q Consensus        22 ~e~vIGLEiH~qL~t~tKlFc~c~~~~~~------~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~f   95 (500)
                      |=.|=++.+-+.|  =..||..-..+-++      .|||.+-.-+.+-|.                  +.+++.-...+|
T Consensus        81 ~~~V~~vpvevrl--Yd~Lf~~~~Pe~~~d~~~~iNp~Sl~v~~a~~e~~------------------l~~~k~~d~~Qf  140 (175)
T 1qtq_A           81 AMAVHALPVEIRL--YDRLFSVPNPGAADDFLSVINPESLVIKQGFAEPS------------------LKDAVAGKAFQF  140 (175)
T ss_dssp             ECEETCEEEEEEE--ECCSBSSSCGGGSTTGGGGBCTTSEEEEEEEECGG------------------GGGCCTTCEEEE
T ss_pred             CEEECCEEEEEEE--CCCCCCCCCCCCCCCHHHHCCCCCEEEEEEEECCH------------------HHHCCCCCEEEE
T ss_conf             3168767469993--67455668988765365616878459997898641------------------763899997988


Q ss_pred             ECCCEECCCCC
Q ss_conf             11321237678
Q gi|254780979|r   96 ARKNYFYPDLP  106 (500)
Q Consensus        96 dRK~YfYpDlp  106 (500)
                      .|.-||.-|-+
T Consensus       141 eR~GYF~~D~~  151 (175)
T 1qtq_A          141 EREGYFCLDSR  151 (175)
T ss_dssp             TTTEEEESCTT
T ss_pred             EEEEEEEECCC
T ss_conf             97469996888


No 43 
>>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, protein structure initiative; 1.90A {Bacteroides uniformis atcc 8492} (A:84-171)
Probab=21.33  E-value=38  Score=13.73  Aligned_cols=17  Identities=24%  Similarity=0.528  Sum_probs=12.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             37678882014454420153389997
Q gi|254780979|r  102 YPDLPQGYQISQHDKPIVGEGKVSVS  127 (500)
Q Consensus       102 YpDlpkgyQiTQ~~~Pi~~~G~l~~~  127 (500)
                      |--+||-||||         ||++.+
T Consensus        25 fivnpk~y~it---------gyie~p   41 (88)
T 3dsm_A           25 FIINPKTYEIT---------GYIECP   41 (88)
T ss_dssp             EEEETTTTEEE---------EEEECT
T ss_pred             EEECCCCCEEE---------EEEECC
T ss_conf             87758558488---------999707


No 44 
>>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} (A:195-285)
Probab=21.09  E-value=46  Score=13.04  Aligned_cols=34  Identities=12%  Similarity=0.325  Sum_probs=20.0

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             56764322011257543213766678862223540246
Q gi|254780979|r  207 CDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNVNSIR  244 (500)
Q Consensus       207 sd~~meeGslR~DvNVSi~~~~~~~GtRvEIKNlnS~~  244 (500)
                      .-|.++.|++|..=.|-+.+    .+..++||++..++
T Consensus        23 v~G~v~sG~i~~gd~i~i~p----~~~~~~VksIe~~~   56 (91)
T 1wb1_A           23 VTGTINKGIVKVGDELKVLP----INMSTKVRSIQYFK   56 (91)
T ss_dssp             ECCCCCBSCCCSSEEECCTT----TCCCEEECCBCGGG
T ss_pred             EEEEECCCEECCCCEEEECC----CCCCCCCCEEECCC
T ss_conf             78998468251586545336----64211221021024


No 45 
>>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* (C:)
Probab=20.07  E-value=25  Score=14.98  Aligned_cols=17  Identities=12%  Similarity=0.116  Sum_probs=7.3

Q ss_pred             CCHHHHHHHHHHHHCCC
Q ss_conf             78899999999970788
Q gi|254780979|r  483 ANPSIVQKMLKEKLGIK  499 (500)
Q Consensus       483 Adpk~v~~lL~e~L~~k  499 (500)
                      +|.+.|.+.|.++++.+
T Consensus       527 ~~~~~~~~~~~~~~~~~  543 (546)
T 2wvr_C          527 ADLAHITARLAHQTRAE  543 (546)
T ss_dssp             -----------------
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             79999999999997665


No 46 
>>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} (A:1-168)
Probab=20.01  E-value=49  Score=12.89  Aligned_cols=36  Identities=11%  Similarity=0.131  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHH-CCEECCCCEEECCCEECCCCCCC
Q ss_conf             9999999987782-97624420131132123767888
Q gi|254780979|r   73 RCVQQAVMTGLGL-NAHINKYSVFARKNYFYPDLPQG  108 (500)
Q Consensus        73 ~av~~ai~~~~al-~~~i~~~~~fdRK~YfYpDlpkg  108 (500)
                      .|+..-+.++... +-.......|.||+|..|++-.+
T Consensus        89 ~~i~~ll~la~~~~g~~~v~~v~YsRknf~~P~~Q~~  125 (168)
T 1jl0_A           89 KALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGY  125 (168)
T ss_dssp             GGHHHHHHHHHHHHCCCEEEEEEEEEECCSSGGGCCT
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf             9899999999975387632689971136768122776


Done!