Query gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus Liberibacter asiaticus str. psy62] Match_columns 500 No_of_seqs 209 out of 1752 Neff 6.3 Searched_HMMs 33803 Date Wed Jun 1 19:58:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780979.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3ip4_B Aspartyl/glutamyl-tRNA 100.0 0 0 951.3 28.3 290 21-318 2-292 (292) 2 >3h0l_B Aspartyl/glutamyl-tRNA 100.0 0 0 936.1 29.4 294 19-319 2-296 (296) 3 >1zq1_C Glutamyl-tRNA(Gln) ami 100.0 0 0 778.4 17.2 279 17-319 8-329 (329) 4 >2d6f_C Glutamyl-tRNA(Gln) ami 100.0 0 0 769.8 21.0 275 21-320 2-324 (324) 5 >2hz7_A Glutaminyl-tRNA synthe 100.0 0 0 433.8 -8.5 282 210-497 40-351 (351) 6 >3h0l_B Aspartyl/glutamyl-tRNA 100.0 1.4E-36 4.1E-41 289.5 12.9 178 320-497 1-180 (182) 7 >2d6f_C Glutamyl-tRNA(Gln) ami 100.0 3.5E-32 1E-36 257.0 3.5 173 321-499 1-173 (174) 8 >1zq1_C Glutamyl-tRNA(Gln) ami 100.0 7.5E-32 2.2E-36 254.6 4.8 172 320-498 1-173 (177) 9 >3ip4_B Aspartyl/glutamyl-tRNA 99.9 3.9E-24 1.2E-28 197.8 12.8 118 319-436 1-119 (119) 10 >3ip4_B Aspartyl/glutamyl-tRNA 99.6 6.4E-16 1.9E-20 137.2 7.4 63 437-499 1-64 (72) 11 >1ng6_A Hypothetical protein Y 99.0 7.4E-10 2.2E-14 92.6 7.0 54 436-497 2-56 (56) 12 >2hz7_A Glutaminyl-tRNA synthe 91.2 0.033 9.8E-07 36.2 -0.6 113 166-301 38-180 (351) 13 >1ltz_A Phenylalanine-4-hydrox 67.0 4.6 0.00013 20.5 2.7 45 279-335 59-103 (110) 14 >2v27_A Phenylalanine hydroxyl 66.9 4.6 0.00014 20.4 2.7 45 279-335 60-104 (108) 15 >1toh_A Tyroh, tyrosine hydrox 54.7 5.2 0.00015 20.1 1.2 52 279-342 43-97 (107) 16 >2inr_A DNA topoisomerase 4 su 49.2 17 0.0005 16.3 7.4 20 324-343 82-101 (158) 17 >3e2d_A Alkaline phosphatase; 46.4 19 0.00055 16.0 3.8 33 384-416 12-44 (88) 18 >1mlw_A Tryptophan 5-monooxyge 44.1 9.6 0.00028 18.1 1.2 43 280-334 99-141 (171) 19 >1phz_A Protein (phenylalanine 43.1 8.2 0.00024 18.6 0.8 45 279-335 133-177 (275) 20 >1tme_2 Theiler'S murine encep 42.7 11 0.00034 17.5 1.4 77 22-116 104-191 (267) 21 >2nov_A DNA topoisomerase 4 su 41.4 22 0.00065 15.4 5.6 34 309-344 70-103 (159) 22 >3d37_A Tail protein, 43 kDa; 41.3 22 0.00065 15.4 2.8 23 177-199 38-60 (65) 23 >1tc5_A Probable eukaryotic D- 38.5 24 0.00072 15.1 5.1 46 180-228 109-157 (194) 24 >1j8u_A Phenylalanine-4-hydrox 38.4 11 0.00032 17.7 0.8 54 279-344 162-220 (305) 25 >1d4m_2 Protein (coxsackieviru 36.7 18 0.00053 16.1 1.7 23 23-46 101-123 (261) 26 >2qj8_A MLR6093 protein; NP_10 35.7 27 0.00079 14.8 3.6 47 167-213 49-95 (187) 27 >1ncq_B Coat protein VP2; HRV, 33.4 20 0.00058 15.8 1.4 78 23-116 101-186 (262) 28 >2hiv_A Thermostable DNA ligas 31.9 30 0.0009 14.4 6.8 87 347-449 24-119 (128) 29 >1aym_2 HRV16, human rhinoviru 28.9 26 0.00077 14.9 1.4 79 23-116 101-187 (261) 30 >2pw6_A Uncharacterized protei 26.7 10 0.00031 17.8 -0.9 40 259-308 104-143 (271) 31 >2bbk_H Methylamine dehydrogen 26.2 36 0.0011 13.9 1.8 43 105-150 53-106 (106) 32 >2mad_H Methylamine dehydrogen 25.8 38 0.0011 13.7 1.9 22 105-129 54-75 (107) 33 >2p0v_A Hypothetical protein B 25.5 39 0.0011 13.6 4.2 19 339-357 62-80 (119) 34 >3c75_H MADH, methylamine dehy 25.3 39 0.0011 13.6 1.8 43 105-150 53-106 (106) 35 >3cji_C Polyprotein; virus cap 25.2 33 0.00098 14.1 1.4 24 22-46 109-132 (284) 36 >1ixr_A Holliday junction DNA 23.7 42 0.0012 13.4 4.8 105 324-430 69-184 (191) 37 >1zvu_A Topoisomerase IV subun 23.5 42 0.0012 13.4 2.3 14 331-344 63-76 (111) 38 >1vcc_A DNA topoisomerase I; D 23.5 26 0.00076 14.9 0.6 12 94-105 64-75 (77) 39 >2gno_A DNA polymerase III, ga 22.9 43 0.0013 13.3 5.1 95 349-451 40-134 (165) 40 >2ajt_A L-arabinose isomerase; 22.4 44 0.0013 13.2 2.4 30 168-197 38-67 (174) 41 >2vj4_A Protein MXIC, MXIC; se 21.9 11 0.00034 17.5 -1.5 26 290-315 30-55 (79) 42 >1qtq_A GLNRS, protein (glutam 21.6 45 0.0013 13.1 2.5 65 22-106 81-151 (175) 43 >3dsm_A Uncharacterized protei 21.3 38 0.0011 13.7 1.1 17 102-127 25-41 (88) 44 >1wb1_A Translation elongation 21.1 46 0.0014 13.0 1.7 34 207-244 23-56 (91) 45 >2wvr_C DNA replication factor 20.1 25 0.00075 15.0 0.0 17 483-499 527-543 (546) 46 >1jl0_A Adometdc, S-adenosylme 20.0 49 0.0014 12.9 1.6 36 73-108 89-125 (168) No 1 >>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B (B:1-292) Probab=100.00 E-value=0 Score=951.27 Aligned_cols=290 Identities=48% Similarity=0.807 Sum_probs=282.8 Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECCCE Q ss_conf 80338989997888689865558842468987652061302689888737899999999987782976244201311321 Q gi|254780979|r 21 DWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNY 100 (500) Q Consensus 21 ~~e~vIGLEiH~qL~t~tKlFc~c~~~~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK~Y 100 (500) +||+|||||||+||+|+|||||+|+++|+++|||+|||||+|+||+||+||++||++|+++|+||||+|++.++|||||| T Consensus 2 ~ye~vIGLEIH~qL~T~tKlFc~c~~~~~~~pNt~vc~v~~g~PG~lP~lN~~av~~Ai~~a~aL~c~I~~~s~FdRK~Y 81 (292) T 3ip4_B 2 HFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNY 81 (292) T ss_dssp CEEEEEEEEEEEECCCSBCSSSSSBSSCCSSTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECCEEEEC T ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCC T ss_conf 96248889988883799686789998788997767786223799988656999999999999983998362315513324 Q ss_pred ECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEE Q ss_conf 23767888201445442015338999706777774103798423666520231001156787148866157861257630 Q gi|254780979|r 101 FYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVT 180 (500) Q Consensus 101 fYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT 180 (500) |||||||||||||++.|||.||+|+++.+++ .++|+|.||||||||||++|+ ++.|+|||||||+||||||| T Consensus 82 fYpDlPkgYQiTQ~~~Pi~~~G~i~i~~~~~------~k~i~I~rihlEEDagK~~h~--~~~slvD~NRaGvPLiEIVT 153 (292) T 3ip4_B 82 FYPDNPKAYQISQFDQPIGENGYIDIEVDGE------TKRIGITRLHMEEDAGKSTHK--GEYSLVDLNRQGTPLIEIVS 153 (292) T ss_dssp CBTTBTTSEEEECSSSCSEEEEEEEECSSSS------CEEEEEEEEEEEECCCEEEEE--TTEEEEECTTTTCEEEEEEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCC------CEEEEEEEEEEEECCCCCCCC--CCCEEEEECCCCCCCEEEEE T ss_conf 3899986533114656657772581313777------459854357875021343335--77548861479984035641 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 365277899999999999998642045676432201125754321376-6678862223540246599999999999999 Q gi|254780979|r 181 KPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQIA 259 (500) Q Consensus 181 ~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ 259 (500) +|||+||+||++|+++|+++|||+|+|||+||+|+||||||||||+.| .+||+||||||||||++|++||+||+.||++ T Consensus 154 ~Pd~~s~~eA~~~~~~l~~il~~~gvsd~~me~GslR~DvNVSi~~~g~~~~g~RvEIKNlnS~~~i~~Ai~~E~~RQ~~ 233 (292) T 3ip4_B 154 EPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEE 233 (292) T ss_dssp CSCBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTSCCCCCEEEEECCCSHHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH T ss_conf 36868899999999999987642461024545575146645233777866676258874377708999999999999999 Q ss_pred HHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 73139800344323375543366530356677778332778773126999999988530 Q gi|254780979|r 260 ILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQI 318 (500) Q Consensus 260 ll~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~l 318 (500) +|+.|+.|.||||+||+.++.|++||+||++.||||||||||||+.|+++||++++++| T Consensus 234 ~l~~g~~i~qeTr~~d~~~~~T~~mR~KE~~~DYryfpepdlppi~i~~~~i~~i~~~l 292 (292) T 3ip4_B 234 ELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTI 292 (292) T ss_dssp HHHHTCCCCEEEEEECTTTSCEEEEEEECSCCCCCCEECTTSCCEECCHHHHHHHHTTC T ss_pred HHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 98679965244411244453357502466653124444766687667599999898668 No 2 >>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B* (B:1-296) Probab=100.00 E-value=0 Score=936.12 Aligned_cols=294 Identities=51% Similarity=0.892 Sum_probs=286.1 Q ss_pred CCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECC Q ss_conf 47803389899978886898655588424689876520613026898887378999999999877829762442013113 Q gi|254780979|r 19 TGDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARK 98 (500) Q Consensus 19 ~~~~e~vIGLEiH~qL~t~tKlFc~c~~~~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK 98 (500) +.+|++||||||||||+|+|||||+|+++|+++|||+|||||+|+||+||+||++||++|+++|+||||+|+++++|||| T Consensus 2 ~~~~~~~iGLEiH~qL~t~tKlF~~c~~~~~~~pN~~v~~~~~~~PG~lP~lN~~av~~ai~~a~aLnc~i~~~~~FdRK 81 (296) T 3h0l_B 2 NEKYEAVIGLEIHVQMDTKTKMFCGCKVEFGAEPNTNVCPVCLGMPGALPIVNKRAVEYAIRASLALNCEVHEESVFARK 81 (296) T ss_dssp -CCEEEEEEEEEEEECCCSBCSSSSCBCCTTCCTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECEEEE T ss_pred CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEE T ss_conf 98851788899987828996757999987788874551751465999875358999999999999839872535368888 Q ss_pred CEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEE Q ss_conf 21237678882014454420153389997067777741037984236665202310011567871488661578612576 Q gi|254780979|r 99 NYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEI 178 (500) Q Consensus 99 ~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEI 178 (500) |||||||||||||||++.|||.||+|++...++. .++|+|.||||||||||++|+ +++|+|||||||+||||| T Consensus 82 ~YfY~DlPkgYQiTQ~~~Pi~~~G~i~i~~~~g~-----~k~i~I~~i~lEEDagk~~h~--~~~s~vD~NRaGvPLiEI 154 (296) T 3h0l_B 82 HYFYPDLPKGYQISQYEKPLATNGWVELNLPNGE-----KKKVRIRRLHIEEDAGKNIHE--GDKTLVDLNRAGTPLMEI 154 (296) T ss_dssp ECCCTTCTTSEEEEESSSCSEEEEEEEEECTTSC-----EEEEEEEEEEEEECCCEEEEE--TTEEEEECSSTTCEEEEE T ss_pred EECCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC-----EEEEEEEEEEEECCCCCCCCC--CCCEEEECCCCCCCEEEE T ss_conf 6227999830001034255133555999825897-----347726789960136755668--996178324689853788 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 30365277899999999999998642045676432201125754321376-66788622235402465999999999999 Q gi|254780979|r 179 VTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQ 257 (500) Q Consensus 179 VT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ 257 (500) ||+|||+||+||++|+++|+++|||+|+|||+||+|+|||||||||+++| .+||+||||||||||++|.+||+||+.|| T Consensus 155 VTePd~~s~~ea~~~~~~l~~ilr~~gv~~~~me~GslR~DvNVSi~~~g~~~~g~RvEIKNlnS~~~i~~aIe~E~~RQ 234 (296) T 3h0l_B 155 VTEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTRVEIKNVNSFRFVQKALEYEIERQ 234 (296) T ss_dssp EECTTBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTCCSCCCCEEEECCCSHHHHHHHHHHHHHHH T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH T ss_conf 70577568999999999999999984767566656632356552557788766665364538746899999999999999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 99731398003443233755433665303566777783327787731269999999885302 Q gi|254780979|r 258 IAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIP 319 (500) Q Consensus 258 ~~ll~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lP 319 (500) +++|+.|+.|.||||+||+.+++|++||+||++.||||||||||||+.|+++||++++.+|| T Consensus 235 ~~ll~~g~~i~~eTr~~d~~~~~T~~mR~KE~~~dYRy~pEpdLppi~i~~~~i~~i~~~lP 296 (296) T 3h0l_B 235 INVVEEGGEVVQETRTFDPQTGKTYPMRTKEEAEDYRYFPDPDLVPLKVKKEWIEEIKKNMP 296 (296) T ss_dssp HHHHHTTCCCCCCEEEEETTTTEEECCSCCCCCCCCCCEECTTSCCEECCHHHHHHHHHTCC T ss_pred HHHHHCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC T ss_conf 99998599543133014665334650445454444677777887773368999999998689 No 3 >>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} (C:1-280,C:408-456) Probab=100.00 E-value=0 Score=778.37 Aligned_cols=279 Identities=27% Similarity=0.395 Sum_probs=265.1 Q ss_pred CCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCC----CCCCCHHHCCC----CCCCCCC------------------ Q ss_conf 454780338989997888689865558842468987----65206130268----9888737------------------ Q gi|254780979|r 17 GTTGDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEP----NTQVSFFDAAM----PGMLPIL------------------ 70 (500) Q Consensus 17 ~~~~~~e~vIGLEiH~qL~t~tKlFc~c~~~~~~~p----Nt~v~~~~~g~----PG~lP~l------------------ 70 (500) -+.++|+++|||||||||+|+ ||||+|+++|+++| |+++||+|.++ ||+||++ T Consensus 8 ~~~~~~~~~iGLEIH~QL~T~-KLFc~c~t~~~~~p~~~~n~~~~p~~s~l~~~~Pgalp~~~~~~~~~y~~~~~~tclv 86 (329) T 1zq1_C 8 FNYEELGLKVGLEIHRQLDTK-KLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKKGRVYVYEGNYELTDLV 86 (329) T ss_dssp SCTTTTTCCBEEEEEEEBSSB-CTTSSCBCCCCSCCCEEEEECCCCCEETTSCBCHHHHHHHHTTCEEEEEECTTTCBGG T ss_pred CCHHHHCCEEEEEEEEEECCC-EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCC T ss_conf 598996967879999877774-0378998767777654456777873013466786424666421000002454310001 Q ss_pred ----------CHHHHHHHHHHHHHHCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE Q ss_conf ----------8999999999877829762442013113212376788820144544201533899970677777410379 Q gi|254780979|r 71 ----------NGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIE 140 (500) Q Consensus 71 ----------N~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~ 140 (500) |++||++|+++|+||||+|+++++||||||||||||+||||||+ ||.||+++++. ++ T Consensus 87 e~Deepp~~~N~~Av~~ai~~a~aLn~~i~~~~~f~RK~yfy~dlp~GyQiTq~---ia~~G~i~~~~----------~~ 153 (329) T 1zq1_C 87 YMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNVSGFQRTAI---IATDGKVETPW----------GA 153 (329) T ss_dssp GTTSSCCCCCCHHHHHHHHHHHHHTTCEECSEECCEEEECSSSSSTTSEEEECE---EEEEEEECCTT----------CC T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCEEE---EECCCEEECCC----------CC T ss_conf 245567776689999999999998089845356562047778887667761027---63783896136----------75 Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC Q ss_conf 84236665202310011567871488661578612576303652778999999999999986420456764322011257 Q gi|254780979|r 141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADV 220 (500) Q Consensus 141 v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~Dv 220 (500) |+|.+|||||||||++|+. +++|++||||||+|||||||+|||+||+||++|+++|+++|||+|+|+. ++|+||||| T Consensus 154 I~I~~I~LEEDaak~ih~~-~~~~l~DlNR~GiPLiEIvTePdi~speeA~~~~~~l~~llr~~g~~~~--~~GsiR~Dv 230 (329) T 1zq1_C 154 VGIPTICLEEDAARIIERK-DKEVIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKR--GLGTIRQDL 230 (329) T ss_dssp EEEEEEEEEECCCEEEEEE-TTEEEEESTTTTCEEEEEECCTTBCSHHHHHHHHHHHHHHHHHTSCBCC--SSTTEEEEE T ss_pred CCCEEEEEECCCCCCCCCC-CCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCC T ss_conf 3512576544667623579-9954785045787148986168877989999999999999999974567--787322566 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------CCCEEEEEECCCCCCCC Q ss_conf 54321376667886222354024659999999999999973139800344323375-------54336653035667777 Q gi|254780979|r 221 NVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIRQETRLFDP-------SKNETRSLRTKEDALDY 293 (500) Q Consensus 221 NVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll~~G~~v~qETR~~d~-------~~~~T~~mR~KE~a~DY 293 (500) |||| .+|+||||||||||++|++||+||+.||.++|+.|+++.||||+||+ ..|.|.+||+.++++ T Consensus 231 NVSi-----~~G~RvEIKNvnS~~~I~~aI~~E~~RQ~~lLe~g~~i~~eTr~~dp~etr~a~~~g~t~~~rp~pg~a-- 303 (329) T 1zq1_C 231 NVSI-----KGGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKPEETRRALPDGNTEYMRPLPGKA-- 303 (329) T ss_dssp EECC-----TTSCCEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHCCCGGCCCEEEECTTSCEEEEECCCCCC-- T ss_pred CCCC-----CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCCCCCC-- T ss_conf 7556-----898467511343478899999999999999997000233213555563010347889875400001346-- Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 83327787731269999999885302 Q gi|254780979|r 294 RYFSEPDLLPLEIDEDFIRAIKKQIP 319 (500) Q Consensus 294 RyfPEPDLPpi~is~e~i~~i~~~lP 319 (500) |||||+|+||+.|++++++.+++.+| T Consensus 304 rmypetd~~~~~~~~~~~~~~~~~~p 329 (329) T 1zq1_C 304 RMYPETDIPPLRIPDDLKKKIKENLP 329 (329) T ss_dssp CEEECTTSCCEECCHHHHHHHHTSCC T ss_pred CCCCCCCCCCEECCHHHHHHHHHHHH T ss_conf 76899998887458999999998642 No 4 >>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} (C:1-273,C:395-445) Probab=100.00 E-value=0 Score=769.78 Aligned_cols=275 Identities=29% Similarity=0.457 Sum_probs=259.2 Q ss_pred CCCEE---EEEEEEEEECCCCCCCCCCCCCC-CCCCCCCCCHHHCCCCCCCCC--------------------------- Q ss_conf 80338---98999788868986555884246-898765206130268988873--------------------------- Q gi|254780979|r 21 DWEVV---IGIEVHAQLSVVSKLFSGASVNF-GAEPNTQVSFFDAAMPGMLPI--------------------------- 69 (500) Q Consensus 21 ~~e~v---IGLEiH~qL~t~tKlFc~c~~~~-~~~pNt~v~~~~~g~PG~lP~--------------------------- 69 (500) |||.+ ||||||+||+|+|||||+|+++| +++||+++|++|.++||+||+ T Consensus 2 dye~v~l~IGLEIH~QL~T~tKLFc~c~t~~~~~epn~~v~~~~~~~pg~Lp~id~aa~~e~~k~~~~~y~~~~~~tClv 81 (324) T 2d6f_C 2 DWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAFEEAMRKLHFHYENYHEETCLV 81 (324) T ss_dssp CHHHHTCEEEEEEEEECCCSBCSSSCSBSSCCCSCCSEEEEEECCCC----------CTTTTGGGGEEEEEECTTTCCHH T ss_pred CHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 86671780667987886798677789988778899986646545678765555548899887542001102356654423 Q ss_pred ---------CCHHHHHHHHHHHHHHCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE Q ss_conf ---------78999999999877829762442013113212376788820144544201533899970677777410379 Q gi|254780979|r 70 ---------LNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIE 140 (500) Q Consensus 70 ---------lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~ 140 (500) +|++|+++|+++|+||||+|++.++||||||||||||+||||||+ ||.||+++++ .++ T Consensus 82 ~~~e~p~~pln~eav~~ai~~a~aln~~i~~~~~f~RK~y~y~dlp~gyQiTq~---ia~~G~i~~~----------~~~ 148 (324) T 2d6f_C 82 EADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQVIDGSNTGGFQRTGL---VATDGHLETP----------QGT 148 (324) T ss_dssp HHTSSCCCCCCHHHHHHHHHHHHHTTCEECSEECCEEEECTTSSSSSSEEEEEE---EEEEEEEEET----------TEE T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE---ECCEEEEEEC----------CCE T ss_conf 356678888799999999999997298225455101146678888867514058---4004589613----------661 Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC Q ss_conf 84236665202310011567871488661578612576303652778999999999999986420456764322011257 Q gi|254780979|r 141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADV 220 (500) Q Consensus 141 v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~Dv 220 (500) |+|.+|||||||||++|+. +++|++||||||+|||||||+|||+||+||++|+++|+++|||+|+|++ +|+||||| T Consensus 149 V~I~~i~LEEDaak~ih~~-~~~s~vDlNRaGiPLiEIvTePdi~speeA~~~~~~i~~ilr~~Gv~~g---~GsiR~Dv 224 (324) T 2d6f_C 149 VKIENLCLEEDAARRIRET-GDGVVFRLDRLGIPLVEITTDPSMSDPQQLREVAYQIGQILRSTRVKRG---LGTIRQDL 224 (324) T ss_dssp EEEEEEEEEECCCEEEEEE-TTEEEEETTSTTCEEEEEECCSCCCCHHHHHHHHHHHHHHHTTSSCCCS---STTCEEEE T ss_pred EEEEEEEECCCCCCCCCCC-CCCEEECHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCC T ss_conf 4122366336777423466-7623431000586347887247858889999999999988753211466---53323523 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC--------CCCCCCCCCCCEEEEEECCCCCCC Q ss_conf 543213766678862223540246599999999999999731398003--------443233755433665303566777 Q gi|254780979|r 221 NVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIR--------QETRLFDPSKNETRSLRTKEDALD 292 (500) Q Consensus 221 NVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll~~G~~v~--------qETR~~d~~~~~T~~mR~KE~a~D 292 (500) ||||++ |+||||||||||++|++||+||+.||.++|+.|+++. .|||+..+ .|.|.+||+.++++ T Consensus 225 NVSi~~-----G~RvEIKNvnsl~~I~~aIeyEv~RQ~~ll~~g~~l~~r~~~~vp~etr~~~~-~g~t~~~rp~pg~~- 297 (324) T 2d6f_C 225 NISIRD-----GARVEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQERGAVVVPEETRKALP-DGNTQYLRPLPTSS- 297 (324) T ss_dssp EEECTT-----SCCEEEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCECCCEEEEECS-SSCEEEEEECCCCC- T ss_pred CCCCCC-----CCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHCCCC-CCCCCCCCCCCCCC- T ss_conf 456689-----86022368765679999999999999999970650102662435254414587-88741221225556- Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 7833277877312699999998853024 Q gi|254780979|r 293 YRYFSEPDLLPLEIDEDFIRAIKKQIPE 320 (500) Q Consensus 293 YRyfPEPDLPpi~is~e~i~~i~~~lPe 320 (500) |||||||+||+.|++++++.+++++|| T Consensus 298 -rmypetd~~~~~~~~~~~~~~~~~~pe 324 (324) T 2d6f_C 298 -RMYLETDIPLFRIEDDLLEGIRRNLPE 324 (324) T ss_dssp -CEEECTTSCCEECCHHHHHHHHTTCCC T ss_pred -CCCCCCCCCCEECCHHHHHHHHHHCCC T ss_conf -658999988874688999999985899 No 5 >>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} (A:378-387,A:511-851) Probab=100.00 E-value=0 Score=433.78 Aligned_cols=282 Identities=22% Similarity=0.305 Sum_probs=245.9 Q ss_pred CCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHH----HHHHHHH-------HHHHHHHHHHHCCCCCCCCCCCCC-- Q ss_conf 6432201125754321376-6678862223540246----5999999-------999999997313980034432337-- Q gi|254780979|r 210 NMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIR----FLGLAIE-------YEARRQIAILEDGGHIRQETRLFD-- 275 (500) Q Consensus 210 ~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~----~i~~AI~-------yEi~RQ~~ll~~G~~v~qETR~~d-- 275 (500) .|+.|+.||+.|.|..... ...+.-.+..|.||++ +++.++. ||+.||--.+..++.+.++++.|+ T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~iN~nSl~v~~~~~E~sl~~~~~~~~yqfeR~gyf~~d~~~~~~~ds~~~~~ 119 (351) T 2hz7_A 40 DDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRYQFERQGYFWRDPVELERVDSREDAL 119 (351) T ss_dssp ------------------------CGGGGBCTTSEEEEEEEECGGGGGSCTTCEEEETTTEEEEECHHHHHCC------C T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEEECHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCE T ss_conf 11233211112332221122344216652588781226348547774499998698888658997677776777999975 Q ss_pred -------CCCCEEEEEECCCCCCCCCCCCC-----CCCCCCCCCHHHHHH-HHHHCCCCHHHHHHHHHHHC--CCCHHHH Q ss_conf -------55433665303566777783327-----787731269999999-88530248368988643202--6889998 Q gi|254780979|r 276 -------PSKNETRSLRTKEDALDYRYFSE-----PDLLPLEIDEDFIRA-IKKQIPELPDAKRERFIGEF--GISLYDA 340 (500) Q Consensus 276 -------~~~~~T~~mR~KE~a~DYRyfPE-----PDLPpi~is~e~i~~-i~~~lPelP~~~~~rl~~~y--GLs~~dA 340 (500) ...+.|..||.|+.+.||||||+ |||+|..++.++++. ++.++||||+.+. ||+++| |++.++| T Consensus 120 vfNrtv~l~~~~~k~~r~Ke~~~d~ry~pe~~~~~P~l~~~~~~~~~~~~~~~~~lPElPe~~~-r~~~~~~lgl~~~~a 198 (351) T 2hz7_A 120 VFGRIITLKDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDA-EFTRLLGLGASEGDA 198 (351) T ss_dssp EEEEEECSSCCC-------------------------------------------------------------------- T ss_pred EEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHH-HHHHHHCCCCCHHHH T ss_conf 8877345674121035654444676666543223587786655533045566326899889999-999985689887789 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 88764113678988640243024577776545788764338740006489899999998886387314789999999981 Q gi|254780979|r 341 SVLVSDKSIADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWE 420 (500) Q Consensus 341 ~~L~~~~~la~~FE~v~~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is~~~aK~il~~l~~ 420 (500) .+|++++.+++||+.+..+.+|+.+|||+++||++.||+.+. +|+|++|++|+.++++|+||.++||+||..|++ T Consensus 199 ~~L~~~~~l~~ffe~v~~~~~~k~~anwi~~el~~~L~~~~~-----~i~~~~laeli~li~~g~Is~~~AK~vl~~~~~ 273 (351) T 2hz7_A 199 RTIARDPALLAFVGGAAPGDTFAQVASWTVNELVAGLRAGEV-----KVRAADLAPLAEGVASGQLSARIAREALARAAA 273 (351) T ss_dssp -------------------------------------------------------------------------------- T ss_pred HHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 988688889999999861687799899999999887256779-----899999999999987496038889999999997 Q ss_pred CCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC Q ss_conf 799988999963987618988999999999983999899752-72132265899999972897788999999999707 Q gi|254780979|r 421 KGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKLG 497 (500) Q Consensus 421 ~~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK~tkGkAdpk~v~~lL~e~L~ 497 (500) ++++|.++|+++||.+++|+++|+.+|++||++||++|++|+ ||++++|||||||||+|+|||||+.|+++|+++|. T Consensus 274 ~~~~p~~ii~e~gL~~isD~~~l~~iv~~vi~~np~~V~~yk~Gk~ka~~~lvGqVMK~tkGkAdp~~v~~lL~e~Ls 351 (351) T 2hz7_A 274 SGDAPLTIIEREGLNAGLSAEALQQVVAQVIAANPDKAEAYRGGKTALLGFFTGQVMRATAGKADPQALAAALKDALA 351 (351) T ss_dssp ------------------------------------------------------------------------------ T ss_pred CCCCHHHHHHHCCCEEECCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC T ss_conf 499989999857983605889999999999997989999986548876667788878962798799999999999749 No 6 >>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B* (B:297-478) Probab=100.00 E-value=1.4e-36 Score=289.48 Aligned_cols=178 Identities=44% Similarity=0.796 Sum_probs=173.7 Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 48368988643202688999888764113678988640-24302457777654578876433874000648989999999 Q gi|254780979|r 320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLA-VNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELI 398 (500) Q Consensus 320 elP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~-~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi 398 (500) |||+++++||+++||||.++|.+|++++.+++||+.+. ...+|+.++||+++++.+.+|+.+.++....++|++|++|+ T Consensus 1 ElP~~~~~rl~~~~gl~~~~a~~l~~~~~l~~~fe~~~~~~~~~~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~l~~l~ 80 (182) T 3h0l_B 1 ELPDQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKEPKGIVNWLINDLLGLLRDKGISIEESPVKPEHLAELV 80 (182) T ss_dssp CCHHHHHHHHHHHTCCCHHHHHHHHHSHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHHHHTCCGGGCSSCHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHH T ss_conf 98489999999983999889999873167788888887622561156656302677887664897775586999999999 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHH Q ss_conf 8886387314789999999981799988999963987618988999999999983999899752-721322658999999 Q gi|254780979|r 399 DLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMK 477 (500) Q Consensus 399 ~li~~g~Is~~~aK~il~~l~~~~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK 477 (500) .++++|+||...+|+++..++.++.+|.++|.++||.+++|+++|+.+|++||++||++|++|+ |+++++||||||||| T Consensus 81 ~lv~~~~it~~~ak~~l~~~~~~~~~~~~~i~~~~l~~~~de~ei~~~v~~vi~~n~~~v~~~~~g~~k~~g~liG~vMk 160 (182) T 3h0l_B 81 KLIKEKVISTKIGKEVIKEMVETGKTPSQIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVGQVMR 160 (182) T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHCC-------------------------------------------- T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 99863875277899999999966999999999769950588899999999999979899999977507678779999999 Q ss_pred HHCCCCCHHHHHHHHHHHHC Q ss_conf 72897788999999999707 Q gi|254780979|r 478 NTGGKANPSIVQKMLKEKLG 497 (500) Q Consensus 478 ~tkGkAdpk~v~~lL~e~L~ 497 (500) +|+|||||+.|+++|+++|+ T Consensus 161 ~~~Gkad~~~v~~ll~e~L~ 180 (182) T 3h0l_B 161 ETRGKANPQVVNKVIRELVK 180 (182) T ss_dssp -------------------- T ss_pred HHCCCCCHHHHHHHHHHHHH T ss_conf 86798799999999999984 No 7 >>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} (C:446-619) Probab=99.97 E-value=3.5e-32 Score=256.99 Aligned_cols=173 Identities=22% Similarity=0.377 Sum_probs=157.5 Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 83689886432026889998887641136789886402430245777765457887643387400064898999999988 Q gi|254780979|r 321 LPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDL 400 (500) Q Consensus 321 lP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~l 400 (500) ||+++++||+++||||+++|.+|+++..++.|++.+....+|+.++|||.+++.+..+ . .++..+++|++|++|+.+ T Consensus 1 LP~~~~~rl~~~ygls~~~a~~L~~~~~~~~f~~~~~~~~~~k~~~~~l~~~l~~l~~-~--~~~~~~i~~~~l~~l~~~ 77 (174) T 2d6f_C 1 LPSEKKERIMRDYGLSEDLASQLVKRNLVDEFEALTEFRVDTTVIASLLAYTLRELRR-E--GHDVDGLGLDELRDAIKL 77 (174) T ss_dssp CHHHHHHHHHHTTCCCHHHHHHHHHTTCTTTC--------CCHHHHHTTTTHHHHHTC---------------------- T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-C--CCCCCCCCHHHHHHHHHH T ss_conf 9899999999873865778988750576899988875156546677789999999986-6--899777999999999999 Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHC Q ss_conf 86387314789999999981799988999963987618988999999999983999899752721322658999999728 Q gi|254780979|r 401 IIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTG 480 (500) Q Consensus 401 i~~g~Is~~~aK~il~~l~~~~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~kgk~ka~gfLvGqVMK~tk 480 (500) +++|+||..++|+++..+++++.+|.++++++|+.++|| ++|+.+|+++|++||++|++|+ ++++|||||||||+|+ T Consensus 78 v~~~~is~~~ak~~l~~~~~~~~~~~~ii~~~~l~~isd-eel~~~v~~vi~~n~~~v~~~k--~k~~g~liG~vMk~t~ 154 (174) T 2d6f_C 78 LEVGKISKDALRDIVACMADEGLAAEDAARKLNLLLLAE-DEIESIIQEIVEGNLDMISERG--MGAMGPLMGQAMGRLR 154 (174) T ss_dssp -------------------------------------------------------------------------------- T ss_pred HHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCH-HHHHHHHHHHHHHCHHHHHHHH--CCCCCCHHHHHHHHHC T ss_conf 985987579999999999857999999999779912698-9999999999997999999985--8983318999999867 Q ss_pred CCCCHHHHHHHHHHHHCCC Q ss_conf 9778899999999970788 Q gi|254780979|r 481 GKANPSIVQKMLKEKLGIK 499 (500) Q Consensus 481 GkAdpk~v~~lL~e~L~~k 499 (500) |||||+.|+++|+++|+-+ T Consensus 155 G~ad~~~v~~~l~~~L~~~ 173 (174) T 2d6f_C 155 GRADGKVVNRILREKIQER 173 (174) T ss_dssp ------------------- T ss_pred CCCCHHHHHHHHHHHHHHH T ss_conf 9979999999999999831 No 8 >>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} (C:457-633) Probab=99.97 E-value=7.5e-32 Score=254.58 Aligned_cols=172 Identities=24% Similarity=0.409 Sum_probs=157.8 Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH Q ss_conf 48368988643202688999888764113678988640243024577776545788764338740006489899999998 Q gi|254780979|r 320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELID 399 (500) Q Consensus 320 elP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~ 399 (500) |||+++++||+++|||+.++|.+|+++..++.|++.+....+++.++||+++++.+.+|+.+.. +++|++|++|+. T Consensus 1 ElP~~~~~rl~~~ygl~~~~a~~L~~~~~~~~f~~~~~~~~~~k~~~~~l~~ei~~~~~~~~~~----~~~~~~l~~l~~ 76 (177) T 1zq1_C 1 ELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEELVSMGVKPSLAASILVVVLKGLRKEVPIE----NVTDEHIREAFQ 76 (177) T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHTSTHHHHHHHHHTTCSTTHHHHHHHHTTCC------------------------ T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHH T ss_conf 2889999999986489989988775203578899999727884667789999999875217767----899999999999 Q ss_pred HHHCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 8863873147899999999817-999889999639876189889999999999839998997527213226589999997 Q gi|254780979|r 400 LIIDGTISGKIAKDIFNILWEK-GGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKN 478 (500) Q Consensus 400 li~~g~Is~~~aK~il~~l~~~-~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~kgk~ka~gfLvGqVMK~ 478 (500) ++.+++||..++|++|..++.. +.+|.+++++.++.++|| ++|.++|++||++||+.+.. |+++++|||||||||+ T Consensus 77 ~~~~~~it~~~ak~~l~~~~~~~~~~~~~ii~~~~~~~isd-~el~~~v~~vi~~~~~~~~~--gk~k~~~~lvG~vMk~ 153 (177) T 1zq1_C 77 LYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSE-EEVTRIIEEVIQQNIEVVKA--KGMGAMGLIMGRVMAK 153 (177) T ss_dssp -------------------------------------------------------------------------------- T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCH-HHHHHHHHHHHHHCHHHHHH--CCCCCCCCHHHHHHHH T ss_conf 99769146999999999997489989999999679914799-99999999999979999983--4157722459999998 Q ss_pred HCCCCCHHHHHHHHHHHHCC Q ss_conf 28977889999999997078 Q gi|254780979|r 479 TGGKANPSIVQKMLKEKLGI 498 (500) Q Consensus 479 tkGkAdpk~v~~lL~e~L~~ 498 (500) |+|||||+.|+++|++.|+- T Consensus 154 ~~Gkad~~~v~~~lke~L~~ 173 (177) T 1zq1_C 154 VRGKADGKLVSQIVRRKLQE 173 (177) T ss_dssp -------------------- T ss_pred HCCCCCHHHHHHHHHHHHHH T ss_conf 67996999999999999988 No 9 >>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B (B:293-411) Probab=99.92 E-value=3.9e-24 Score=197.76 Aligned_cols=118 Identities=41% Similarity=0.729 Sum_probs=114.9 Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 248368988643202688999888764113678988640-2430245777765457887643387400064898999999 Q gi|254780979|r 319 PELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLA-VNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGEL 397 (500) Q Consensus 319 PelP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~-~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeL 397 (500) ||||+++++||+++|||+.++|.+|++++.+++|||++. .+.+||.++||+++|+.+.+|+.+.++++++++|++|++| T Consensus 1 PELP~~~~~Rl~~~ygLs~~~A~~L~~~~~l~~yFe~~~~~~~~~k~~anwi~~el~~~ln~~~~~~~~~~i~~~~la~l 80 (119) T 3ip4_B 1 PELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGM 80 (119) T ss_dssp CCCHHHHHHHHHHTSCCCHHHHHHHTSSHHHHHHHHHHHTTTCCHHHHHHHHHTHHHHHHHHTTCCGGGSSCCHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH T ss_conf 99879999999987099878755431006778888877643663488999999999887540256444589699999999 Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCEE Q ss_conf 988863873147899999999817999889999639876 Q gi|254780979|r 398 IDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQ 436 (500) Q Consensus 398 i~li~~g~Is~~~aK~il~~l~~~~~~p~~iie~~gL~~ 436 (500) +.++++|+||.++||+||..|+.++++|++||+++||.| T Consensus 81 i~lv~~~~Is~~~aK~vl~~~~~~~~~~~~iie~~gL~Q 119 (119) T 3ip4_B 81 IKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQ 119 (119) T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHCCCHHHHHHTTTCCC T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCC T ss_conf 999974974488999999999857999999999759960 No 10 >>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B (B:412-483) Probab=99.63 E-value=6.4e-16 Score=137.22 Aligned_cols=63 Identities=32% Similarity=0.597 Sum_probs=60.4 Q ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC Q ss_conf 18988999999999983999899752-7213226589999997289778899999999970788 Q gi|254780979|r 437 VTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKLGIK 499 (500) Q Consensus 437 isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK~tkGkAdpk~v~~lL~e~L~~k 499 (500) |||+++|+.+|++||++||++|++|+ |+++++|||||||||+|+|||||+.|+++|+++|+.+ T Consensus 1 IsD~~~l~~lv~evi~~np~~V~~yk~Gk~k~~~~lvGqvMK~t~GkAnp~~v~~il~e~L~~~ 64 (72) T 3ip4_B 1 ISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQELDKR 64 (72) T ss_dssp BCCHHHHHHHHHHHHHHCHHHHHHHHTTCSCHHHHHHHHHHHHTTSCBCHHHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 5899999999999999799999999767687675799999999679879999999999999998 No 11 >>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} (A:93-148) Probab=99.02 E-value=7.4e-10 Score=92.58 Aligned_cols=54 Identities=22% Similarity=0.412 Sum_probs=49.4 Q ss_pred ECCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC Q ss_conf 618988999999999983999899752-72132265899999972897788999999999707 Q gi|254780979|r 436 QVTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKLG 497 (500) Q Consensus 436 ~isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK~tkGkAdpk~v~~lL~e~L~ 497 (500) |+| +++|+.+|+++|+++ + ++++++||+||+||++++|||||+.|+++++++|+ T Consensus 2 qls-deel~~~i~~vi~e~-------~~~~~k~~g~lmg~vm~~~~GraD~~~v~~ivk~~L~ 56 (56) T 1ng6_A 2 QLS-EEELRTIVNETIAEV-------GASSKADMGKVMGAIMPKVKGKADGSLINKLVSSQLS 56 (56) T ss_dssp CCC-HHHHHHHHHHHHHHT-------TCCSGGGHHHHHHHHHHHHTTTSCHHHHHHHHHHHCC T ss_pred CCC-HHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC T ss_conf 368-589999999999984-------8998256899999999873787888999999998709 No 12 >>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} (A:378-387,A:511-851) Probab=91.24 E-value=0.033 Score=36.23 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=79.7 Q ss_pred EEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCC-CC------C---CCCCCCCCC Q ss_conf 8661578612576303652778999999999999986420456764322011257543-21------3---766678862 Q gi|254780979|r 166 IDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVS-VC------R---PGEAWGTRC 235 (500) Q Consensus 166 vD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVS-i~------~---~~~~~GtRv 235 (500) .+.+..|....+..+.+......+ .+.++.++|-. ++ . .+.+.|.|. T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~f~~~iN~nSl~v~~~~~E~sl~~~~~~~~y 94 (351) T 2hz7_A 38 VEDDSAGPAEHEAEPGAGQETAPV-----------------------SQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRY 94 (351) T ss_dssp -------------------------------------------------CGGGGBCTTSEEEEEEEECGGGGGSCTTCEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-----------------------CCCHHHHCCCCCCEEEEEEECHHHHCCCCCCEE T ss_conf 211123321111233222112234-----------------------421665258878122634854777449999869 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH--------------------HCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 22354024659999999999999973--------------------1398003443233755433665303566777783 Q gi|254780979|r 236 EVKNVNSIRFLGLAIEYEARRQIAIL--------------------EDGGHIRQETRLFDPSKNETRSLRTKEDALDYRY 295 (500) Q Consensus 236 EIKNlnS~~~i~~AI~yEi~RQ~~ll--------------------~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRy 295 (500) |+.....|-.-..++.++..|+-.++ ..+....++|+.||+....+..++.+..+.+|++ T Consensus 95 qfeR~gyf~~d~~~~~~~ds~~~~~vfNrtv~l~~~~~k~~r~Ke~~~d~ry~pe~~~~~P~l~~~~~~~~~~~~~~~~~ 174 (351) T 2hz7_A 95 QFERQGYFWRDPVELERVDSREDALVFGRIITLKDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKA 174 (351) T ss_dssp EETTTEEEEECHHHHHCC------CEEEEEECSSCCC------------------------------------------- T ss_pred EEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC T ss_conf 88886589976777767779999758877345674121035654444676666543223587786655533045566326 Q ss_pred CCCCCC Q ss_conf 327787 Q gi|254780979|r 296 FSEPDL 301 (500) Q Consensus 296 fPEPDL 301 (500) .||+.= T Consensus 175 lPElPe 180 (351) T 2hz7_A 175 QPLTPE 180 (351) T ss_dssp ------ T ss_pred CCCCHH T ss_conf 899889 No 13 >>1ltz_A Phenylalanine-4-hydroxylase; oxidoreductase, dihydrobiopterin, bacterial enzyme; HET: HBI; 1.40A {Chromobacterium violaceum} (A:59-168) Probab=66.99 E-value=4.6 Score=20.47 Aligned_cols=45 Identities=22% Similarity=0.405 Sum_probs=35.3 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 336653035667777833277877312699999998853024836898864320268 Q gi|254780979|r 279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI 335 (500) Q Consensus 279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL 335 (500) -.|..+|..+.- -|-||||+ +-++---.|.|-+.....|...||. T Consensus 59 p~t~~iR~~~~~---~YtpEPDi---------~He~~GHvP~L~~p~fA~f~q~~G~ 103 (110) T 1ltz_A 59 PVTWWLREPHQL---DYLQEPDV---------FHDLFGHVPLLINPVFADYLEAYGK 103 (110) T ss_dssp EEECSCCCTTCS---SSCCSCCH---------HHHHHHTGGGGGSHHHHHHHHHHHH T ss_pred CCCCEECCCCCC---CCCCCCHH---------HHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 552332687635---56888368---------9987456854368679999999978 No 14 >>2v27_A Phenylalanine hydroxylase; cold adaptation, tetrahydrobiopterin, stability, flexibility, alkaptonuria, oxidoreductase; 1.50A {Colwellia psychrerythraea 34H} PDB: 2v28_A (A:42-149) Probab=66.86 E-value=4.6 Score=20.44 Aligned_cols=45 Identities=22% Similarity=0.479 Sum_probs=35.5 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 336653035667777833277877312699999998853024836898864320268 Q gi|254780979|r 279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI 335 (500) Q Consensus 279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL 335 (500) -.|..+|..+.- -|-||||+ +-++---+|.|-+.....|...||. T Consensus 60 p~t~~iR~~~~~---~YtpEPDi---------fHe~~GHvPlL~~p~FA~f~q~~G~ 104 (108) T 2v27_A 60 PVATFIRSREEM---DYLQEPDI---------FHEIFGHCPLLTNSSFANYTEAYGK 104 (108) T ss_dssp EEECCCCCSTTT---TCCSSCCH---------HHHHHHTGGGGGSHHHHHHHHHHHH T ss_pred CCEEECCCCCCC---CCCCCHHH---------HHHHHCCCHHHCCHHHHHHHHHHHH T ss_conf 210001573423---55642448---------9998674263189899999999999 No 15 >>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, pterin CO-substrate; 2.30A {Rattus norvegicus} (A:113-203,A:283-298) Probab=54.70 E-value=5.2 Score=20.06 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=36.2 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC---CCHHHHHH Q ss_conf 33665303566777783327787731269999999885302483689886432026---88999888 Q gi|254780979|r 279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFG---ISLYDASV 342 (500) Q Consensus 279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yG---Ls~~dA~~ 342 (500) -.|..+|..+.- -|.||||+ +-++---+|.|-+.....|..+|| |.-.||+- T Consensus 43 p~t~~IR~~~~~---~YtpEPDi---------fHElfGHvPlLa~p~FA~f~q~~G~~~L~~~~~~~ 97 (107) T 1toh_A 43 QCTQYIRHASSP---MHSPEPDC---------CHELLGHVPMLADRTFAQFSQDIGLASLGFNDAKD 97 (107) T ss_dssp EECCCCCCTTCT---TCCSSCCH---------HHHHHHTHHHHTSHHHHHHHHHHHHHHTTHHHHHH T ss_pred CEEEEECCCCCC---CCCCCHHH---------HHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 224430366666---66764238---------99985656300898999999999998873999999 No 16 >>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus} (A:207-229,A:366-500) Probab=49.22 E-value=17 Score=16.28 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=6.8 Q ss_pred HHHHHHHHHCCCCHHHHHHH Q ss_conf 89886432026889998887 Q gi|254780979|r 324 AKRERFIGEFGISLYDASVL 343 (500) Q Consensus 324 ~~~~rl~~~yGLs~~dA~~L 343 (500) +-+..++..||+|+.+|+.+ T Consensus 82 eAk~~L~~~f~lse~QAeAI 101 (158) T 2inr_A 82 DAKENLIEVYEFTEEQAEAI 101 (158) T ss_dssp HHHHHHHTTSSCCHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHH T ss_conf 99999887259999999999 No 17 >>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer, psychrophilic bacteria, crystallography, hydrolase; 1.40A {Vibrio SP} (A:367-454) Probab=46.38 E-value=19 Score=15.98 Aligned_cols=33 Identities=18% Similarity=0.403 Sum_probs=28.3 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 000648989999999888638731478999999 Q gi|254780979|r 384 IEDTPISPNQLGELIDLIIDGTISGKIAKDIFN 416 (500) Q Consensus 384 ~~~~~i~p~~laeLi~li~~g~Is~~~aK~il~ 416 (500) ++...-+|+.|+++|+.-.+=+||..+|+.||. T Consensus 12 ldk~~qTp~~la~iVN~nS~F~It~~QA~~Vl~ 44 (88) T 3e2d_A 12 LDKSLQTPEKLAEIVNKNSEFPITAEQAKNVLA 44 (88) T ss_dssp SCGGGCCHHHHHHHHHHHCSSCCCHHHHHHHHC T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 343455435667776522587777888877652 No 18 >>1mlw_A Tryptophan 5-monooxygenase; aromatic amino acid hydroxylase catalytic domain fold, oxidoreductase; HET: HBI; 1.71A {Homo sapiens} (A:1-60,A:113-198,A:277-301) Probab=44.06 E-value=9.6 Score=18.08 Aligned_cols=43 Identities=28% Similarity=0.445 Sum_probs=29.1 Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 3665303566777783327787731269999999885302483689886432026 Q gi|254780979|r 280 ETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFG 334 (500) Q Consensus 280 ~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yG 334 (500) .|..+|+.+.- -|-||||+ +-++---+|.|-+.....|...|| T Consensus 99 ~Tq~IR~~e~~---dYtpEPDi---------fHEvfGHvPlLadP~FAdF~q~~G 141 (171) T 1mlw_A 99 CTQYVRHSSDP---FYTPEPDT---------CHELLGHVPLLAEPSFAQFSQEIG 141 (171) T ss_dssp ECCCCCCTTCT---TCCSSCCH---------HHHHHHTHHHHTSHHHHHHHHHHH T ss_pred CCCEECCCCCC---CCCCCCCH---------HHHHHCCCCCCCCHHHHHHHHHHH T ss_conf 50134789988---87899951---------555545560118989999999999 No 19 >>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} (A:132-406) Probab=43.14 E-value=8.2 Score=18.59 Aligned_cols=45 Identities=24% Similarity=0.458 Sum_probs=33.7 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 336653035667777833277877312699999998853024836898864320268 Q gi|254780979|r 279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI 335 (500) Q Consensus 279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL 335 (500) -.|..+|+.+.- -|-||||+ +-++---+|.|-+.....|...||+ T Consensus 133 p~t~~iR~~~~~---~YtpEPDi---------~He~~GH~PlLa~p~fA~f~q~~G~ 177 (275) T 1phz_A 133 HCTQYIRHGSKP---MYTPEPDI---------CHELLGHVPLFSDRSFAQFSQEIGL 177 (275) T ss_dssp EECCCCCCTTCT---TCCSSCCH---------HHHHHHTHHHHTSHHHHHHHHHHHH T ss_pred CEEEEECCCCCC---CCCCCCCC---------HHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 135333266545---55789961---------4455456722179999999999999 No 20 >>1tme_2 Theiler'S murine encephalomyelitis virus (subunit VP2); icosahedral virus; 2.80A {Theiler} PDB: 1tmf_2 2mev_2 1mec_2 (2:) Probab=42.69 E-value=11 Score=17.53 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=42.3 Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCC-----CC--C-CCCC---CCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEEC Q ss_conf 0338989997888689865558842-----46--8-9876---5206130268988873789999999998778297624 Q gi|254780979|r 22 WEVVIGIEVHAQLSVVSKLFSGASV-----NF--G-AEPN---TQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHIN 90 (500) Q Consensus 22 ~e~vIGLEiH~qL~t~tKlFc~c~~-----~~--~-~~pN---t~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~ 90 (500) |=.-.|.+||||.|+ +|-.++|-- +| + ...| ....|...+..=.-+ +-... T Consensus 104 ~l~R~G~~V~VQcNa-SkFH~G~LlV~~vPE~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~ 165 (267) T 1tme_2 104 YLCKTGWRVQVQCNA-SQFHAGSLLVFMAPEFYTGKGTKTGDMEPTDPFTMDTTWRAP-----------------QGAPT 165 (267) T ss_dssp EEEEEEEEEEEECCC-CTTCEEEEEEEEEETCCCCCEECTTTSSEECTTSCCSSCBCC-----------------CSSCC T ss_pred HHHCCCEEEEEEECC-CHHHCEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCEECC-----------------CCCCC T ss_conf 756087299999679-834200687898054685355677774325655556510057-----------------77756 Q ss_pred CCCEEECCCEECCCCCCCCCCCCCCC Q ss_conf 42013113212376788820144544 Q gi|254780979|r 91 KYSVFARKNYFYPDLPQGYQISQHDK 116 (500) Q Consensus 91 ~~~~fdRK~YfYpDlpkgyQiTQ~~~ 116 (500) ....+..++|+.+|-..=+|.|.|.+ T Consensus 166 ~~~~~~~~~~~~~~g~~~~~~t~fPH 191 (267) T 1tme_2 166 GYRYDSRTGFFAMNHQNQWQWTVYPH 191 (267) T ss_dssp CCCSSSCCSSCBTTCCCGGGGGGSSE T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCH T ss_conf 62013565412157744161010573 No 21 >>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* (A:183-206,A:342-476) Probab=41.36 E-value=22 Score=15.44 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=14.4 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 999998853024836898864320268899988876 Q gi|254780979|r 309 DFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLV 344 (500) Q Consensus 309 e~i~~i~~~lPelP~~~~~rl~~~yGLs~~dA~~L~ 344 (500) +.|+-||.+ +.+.+-+..++..||+|+.+|+.++ T Consensus 70 eVI~iIR~S--~~~~eAk~~L~~~f~lse~QAeAIL 103 (159) T 2nov_A 70 EVIALIRAS--ENKADAKENLKVSYDFTEEQAEAIV 103 (159) T ss_dssp HHHHHHTTS--SSHHHHHSSCCC-CCCCHHHHHHHH T ss_pred HHHHHHHCC--CCHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 567887617--9768999999986599999999999 No 22 >>3d37_A Tail protein, 43 kDa; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.10A {Neisseria meningitidis MC58} (A:212-276) Probab=41.30 E-value=22 Score=15.44 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=20.7 Q ss_pred EEEECCCCCCHHHHHHHHHHHHH Q ss_conf 76303652778999999999999 Q gi|254780979|r 177 EIVTKPDMRSSLEAKAFLTKLRS 199 (500) Q Consensus 177 EIVT~Pd~~s~~ea~~~~~~l~~ 199 (500) -||+++|..|.++|...++|+.. T Consensus 38 ~ivv~~D~~n~~~~~~rArK~la 60 (65) T 3d37_A 38 KTVVVSDADNLAALQKQAKKQLA 60 (65) T ss_dssp EEEECCC--CHHHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHHH T ss_conf 38954788999999999999999 No 23 >>1tc5_A Probable eukaryotic D-amino acid tRNA deacylase, LMAJ005534AAA; SGPP, structural genomics, PSI, protein structure initiative; 1.93A {Leishmania major} (A:) Probab=38.47 E-value=24 Score=15.13 Aligned_cols=46 Identities=9% Similarity=-0.014 Sum_probs=38.3 Q ss_pred ECCCCCC---HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC Q ss_conf 0365277---899999999999998642045676432201125754321376 Q gi|254780979|r 180 TKPDMRS---SLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG 228 (500) Q Consensus 180 T~Pd~~s---~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~ 228 (500) ..|+++. |++|..+-.++-..+|..++.+. .|.+..|.+||+-..| T Consensus 109 ~rPsF~~Aa~~~~A~~ly~~f~~~lr~~~~~v~---tG~Fga~M~v~l~NdG 157 (194) T 1tc5_A 109 RSVQFHQLVAKDVGAALYDRFCHFVRVARGVDE---SRVDANGAPRSEGDAP 157 (194) T ss_dssp TEEECTTBCCHHHHHHHHHHHHHHHHHHTTCCT---TSBCTTSSBSSGGGSC T ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCC T ss_conf 998811319968999999999999987616442---1101122221110011 No 24 >>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate facial triad, tetrahydrobiopterin, oxidoreductase; HET: H4B; 1.50A {Homo sapiens} (A:1-305) Probab=38.38 E-value=11 Score=17.71 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=37.3 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-----CHHHHHHHH Q ss_conf 336653035667777833277877312699999998853024836898864320268-----899988876 Q gi|254780979|r 279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI-----SLYDASVLV 344 (500) Q Consensus 279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL-----s~~dA~~L~ 344 (500) -.|..+|..+.- -|-||||+ +-++---+|.|-+.....|..+||+ ++++...|. T Consensus 162 p~TqyIRh~~~p---~YtpEPDi---------~HEl~GHvPlLadp~FA~f~q~~G~~~l~a~~~~i~~La 220 (305) T 1j8u_A 162 HCTQYIRHGSKP---MYTPEPDI---------CHELLGHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLA 220 (305) T ss_dssp EECCCCCCTTCT---TCCSSCCH---------HHHHHHTHHHHTSHHHHHHHHHHHHHHTTCCHHHHHHHH T ss_pred CCCCEECCCCCC---CCCCCCCH---------HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 441232688777---77899951---------545545572217999999999999988558876899852 No 25 >>1d4m_2 Protein (coxsackievirus A9); picornavirus structure, RGD, uncoating, virus-receptor interaction, WIN compound, virus/viral protein; HET: MYR W71; 2.90A {Human coxsackievirus A9} PDB: 1mqt_B* 1oop_B* 1h8t_B* 1upn_B 1m11_2 1cov_2* 1jew_2 1ev1_2* 2c8i_B (2:) Probab=36.66 E-value=18 Score=16.07 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.0 Q ss_pred CEEEEEEEEEEECCCCCCCCCCCC Q ss_conf 338989997888689865558842 Q gi|254780979|r 23 EVVIGIEVHAQLSVVSKLFSGASV 46 (500) Q Consensus 23 e~vIGLEiH~qL~t~tKlFc~c~~ 46 (500) =.-.|.+||||.|+ +|-.++|-- T Consensus 101 l~R~G~~V~VQcNa-SkFH~G~Ll 123 (261) T 1d4m_2 101 LGRAGYTIHVQCNA-SKFHQGCLL 123 (261) T ss_dssp EEEEEEEEEEECCC-CTTCEEEEE T ss_pred EECCCCEEEEEECC-CCCCHHEEE T ss_conf 32488189999579-914611499 No 26 >>2qj8_A MLR6093 protein; NP_106651.1, uncharacterized protein MLR6093, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Mesorhizobium loti MAFF303099} (A:146-332) Probab=35.67 E-value=27 Score=14.83 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=38.8 Q ss_pred EECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 66157861257630365277899999999999998642045676432 Q gi|254780979|r 167 DLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEE 213 (500) Q Consensus 167 D~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~mee 213 (500) .++|+|+|-+=+=..---.+++.+...++-+.+.|+++|+-+++.+. T Consensus 49 a~~~~Gip~it~E~G~~~~~~~~v~~~~~gi~~vL~~lgii~~~~~~ 95 (187) T 2qj8_A 49 LVHRQGKTFICTEFGGGVVSAEALTIYEAGVRNGLIALGLVKGKAEY 95 (187) T ss_dssp HTTTTCCEEEEEEEECC------CHHHHHHHHHHHHHTTSBCSCC-- T ss_pred EHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 01313962556640476068899999999999999972655555556 No 27 >>1ncq_B Coat protein VP2; HRV, pleconaril, icosahedral virus; HET: W11; 2.50A {Human rhinovirus 14} (B:) Probab=33.44 E-value=20 Score=15.81 Aligned_cols=78 Identities=15% Similarity=0.071 Sum_probs=42.4 Q ss_pred CEEEEEEEEEEECCCCCCCCCCCCCC-------CCCCCCCC-CHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCE Q ss_conf 33898999788868986555884246-------89876520-61302689888737899999999987782976244201 Q gi|254780979|r 23 EVVIGIEVHAQLSVVSKLFSGASVNF-------GAEPNTQV-SFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSV 94 (500) Q Consensus 23 e~vIGLEiH~qL~t~tKlFc~c~~~~-------~~~pNt~v-~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~ 94 (500) =.-.|++||||.|+ +|-.++|---+ +..+.+++ ..+-..+||.--. .--.-...-. T Consensus 101 l~R~g~~v~VQ~Na-s~Fh~G~Llv~~vPE~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 164 (262) T 1ncq_B 101 LGRSGYTVHVQCNA-TKFHSGCLLVVVIPEHQLASHEGGNVSVKYTFTHPGERGI---------------DLSSANEVGG 164 (262) T ss_dssp EEEEEEEEEEECCC-CTTCEEEEEEEEEETCCCCBTTCTTCCCCGGGGCCGGGCE---------------ETTSCCCTTC T ss_pred HHCCCEEEEEEECC-CHHHHHEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCC---------------CCCCCCCCCC T ss_conf 56087299999668-8542014768980567741457887233332368874443---------------2234444588 Q ss_pred EECCCEECCCCCCCCCCCCCCC Q ss_conf 3113212376788820144544 Q gi|254780979|r 95 FARKNYFYPDLPQGYQISQHDK 116 (500) Q Consensus 95 fdRK~YfYpDlpkgyQiTQ~~~ 116 (500) ++.++|+.++--.=+|.|+|-+ T Consensus 165 ~~~~~~~~~~~~~~~~~t~~PH 186 (262) T 1ncq_B 165 PVKDVLYNMNGTLLGNLLIFPH 186 (262) T ss_dssp BCCCGGGTTTTBCGGGGGGSSE T ss_pred CCCCEEECCCCEEEHHHCCCCH T ss_conf 5443036469878526203566 No 28 >>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* (A:1-74,A:192-245) Probab=31.89 E-value=30 Score=14.41 Aligned_cols=87 Identities=29% Similarity=0.480 Sum_probs=49.1 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC--------HHHHHHHHHHH Q ss_conf 1367898864024302457777654578876433874000648989999999888638731--------47899999999 Q gi|254780979|r 347 KSIADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTIS--------GKIAKDIFNIL 418 (500) Q Consensus 347 ~~la~~FE~v~~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is--------~~~aK~il~~l 418 (500) ..+++.|+.+.....-..... ++.++++ .++|+++...+-|+. |+|. ....-+.+..- T Consensus 24 a~LA~~fe~IEaTSSRLeii~-iLAnlLr------------sl~PeDL~~vVYLl~-GkI~P~yE~~~~~~~~~~~~~~~ 89 (128) T 2hiv_A 24 KVIAEYFDKLEKISSRLQLTA-LLADLLS------------KSDKTIIDKVVYIIQ-GKLWPDFLVGIGDATVLDAMAIA 89 (128) T ss_dssp HHHHHHHHHHHHCCCHHHHHH-HHHHHHH------------TSCGGGHHHHHHHTT-TCSSCGGGCCCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHH-HHHHHHH------------HCCHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHH T ss_conf 999999999997228899999-9999998------------589277899999973-99885557684588999999998 Q ss_pred HHCCCCHHHHHHH-CCCEECCCHHHHHHHHHH Q ss_conf 8179998899996-398761898899999999 Q gi|254780979|r 419 WEKGGTPKEIVEE-LGLRQVTDLSAIEKVVDE 449 (500) Q Consensus 419 ~~~~~~p~~iie~-~gL~~isD~~eL~~iv~e 449 (500) +.++.+..+||++ .+|. .|.+.|.+++-+ T Consensus 90 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 119 (128) T 2hiv_A 90 FGGGQSASEIIERAYNLR--ADLGNIAKIIVE 119 (128) T ss_dssp HSSSGGGHHHHHHHHHHS--CCHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHHCCC--CCCHHHHHHHHC T ss_conf 625898899999996005--891568999861 No 29 >>1aym_2 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} PDB: 1ayn_2* 1ncr_B* 1nd2_B* 1nd3_B* 1qju_2* 1qjx_2* 1qjy_2* 1c8m_2* 1d3e_2 1r1a_2* 2hwd_2* 2hwe_2* 2hwf_2* 1fpn_2* 1v9u_2* 3dpr_B* (2:) Probab=28.93 E-value=26 Score=14.91 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=47.0 Q ss_pred CEEEEEEEEEEECCCCCCCCCCCC-----CC--CCCCCCC-CCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCE Q ss_conf 338989997888689865558842-----46--8987652-061302689888737899999999987782976244201 Q gi|254780979|r 23 EVVIGIEVHAQLSVVSKLFSGASV-----NF--GAEPNTQ-VSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSV 94 (500) Q Consensus 23 e~vIGLEiH~qL~t~tKlFc~c~~-----~~--~~~pNt~-v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~ 94 (500) =.-.|.+||||.|+ +|--++|-- |+ +...+.. ........||.-- --.+..-..... T Consensus 101 l~R~G~~VhVQcNa-SkFHqG~LlV~~VPE~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 165 (261) T 1aym_2 101 LGRSGYTVHVQCNA-SKFHQGTLLVVMIPEHQLATVNKGNVNAGYKYTHPGEAG--------------REVGTQVENEKQ 165 (261) T ss_dssp EEEEEEEEEEECCC-CTTCEEEEEEEEEETCCCCCBSSTTCCCCGGGGCCGGGC--------------EETTTSCCCTTC T ss_pred HHHCCEEEEEEECC-CHHHCEEEEEEEECCEEECCCCCCCCCCCCCCCCCCCCC--------------CCCCCCCCCCCC T ss_conf 77288499999769-843210798999144666256778734321006876677--------------310431125566 Q ss_pred EECCCEECCCCCCCCCCCCCCC Q ss_conf 3113212376788820144544 Q gi|254780979|r 95 FARKNYFYPDLPQGYQISQHDK 116 (500) Q Consensus 95 fdRK~YfYpDlpkgyQiTQ~~~ 116 (500) +++++|+-.+-..=+|.|.|-+ T Consensus 166 ~~~~~~~~~~g~~~~~lt~fPH 187 (261) T 1aym_2 166 PSDDNWLNFDGTLLGNLLIFPH 187 (261) T ss_dssp CCCCGGGTTTTBCGGGGGGSSE T ss_pred CCCCCEECCCCEEECCEEEEEE T ss_conf 4645315348876513457511 No 30 >>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structure initiative; 2.27A {Escherichia coli K12} (A:) Probab=26.73 E-value=10 Score=17.81 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=32.4 Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH Q ss_conf 97313980034432337554336653035667777833277877312699 Q gi|254780979|r 259 AILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDE 308 (500) Q Consensus 259 ~ll~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~ 308 (500) .+.+.|-.+..++|.||- |.+++++ .|||+.|+|.|.|+- T Consensus 104 ~l~~~g~~~~~~~~~lDH--G~~vPL~--------~~~~~~~iPvV~is~ 143 (271) T 2pw6_A 104 LLAPIPVTLDKEAWGFDH--GSWGVLI--------KXYPDADIPXVQLSI 143 (271) T ss_dssp HHTTSCEEEESSCCCCCH--HHHHHHH--------HHSTTCCSCEEEEEE T ss_pred HHCCCCCCCCCCCCCCCC--CCCEEEE--------EECCCCCCCEEEEEC T ss_conf 623578400577766544--5402357--------844777843699844 No 31 >>2bbk_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 1.75A {Paracoccus denitrificans} (H:195-300) Probab=26.20 E-value=36 Score=13.86 Aligned_cols=43 Identities=9% Similarity=0.223 Sum_probs=22.5 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE-----------EEEEEEEEEEEE Q ss_conf 7888201445442015338999706777774103-----------798423666520 Q gi|254780979|r 105 LPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRT-----------IEVGIERIHLEQ 150 (500) Q Consensus 105 lpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~-----------~~v~I~~i~lEE 150 (500) -|.|||+..+..+ .|.|-+-...+..+..+. .+=+|.||.||+ T Consensus 53 rPGG~Q~~A~~~~---~~rlyvLMh~g~~~sHkdpgteVWv~D~~t~krv~ri~L~h 106 (106) T 2bbk_H 53 RPGGWQQVAYHRA---LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH 106 (106) T ss_dssp EECSSSCEEEETT---TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE T ss_pred CCCCEEEEEECCC---CCEEEEEECCCCCEEECCCCCCEEEEECCCCCEEEEECCCC T ss_conf 2562178897378---85688870688716870589714778679995989974899 No 32 >>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} (H:212-318) Probab=25.79 E-value=38 Score=13.67 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=13.9 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 7888201445442015338999706 Q gi|254780979|r 105 LPQGYQISQHDKPIVGEGKVSVSIG 129 (500) Q Consensus 105 lpkgyQiTQ~~~Pi~~~G~l~~~~~ 129 (500) -|.|||+..+..+ .|.|-+-.. T Consensus 54 rPgG~Q~~A~~~~---~~~lyvLMh 75 (107) T 2mad_H 54 RPGGWQQVAYLKS---SDGIYLLTS 75 (107) T ss_pred CCCCEEEEEECCC---CCEEEEEEC T ss_conf 4652056887389---976999633 No 33 >>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} (A:1-83,A:454-489) Probab=25.46 E-value=39 Score=13.63 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=13.8 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9888764113678988640 Q gi|254780979|r 339 DASVLVSDKSIADYFEKLA 357 (500) Q Consensus 339 dA~~L~~~~~la~~FE~v~ 357 (500) +....+.|++|+-+||..- T Consensus 62 ~vk~~i~DpdLarLFENcf 80 (119) T 2p0v_A 62 HIKQLLTNAKLAWXFENCF 80 (119) T ss_dssp HHHHHCCCHHHHHHHHHHT T ss_pred HHHHHHCCHHHHHHHHHHC T ss_conf 9998715988999999866 No 34 >>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} (H:265-370) Probab=25.33 E-value=39 Score=13.62 Aligned_cols=43 Identities=14% Similarity=0.296 Sum_probs=21.7 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE-----------EEEEEEEEEEEE Q ss_conf 7888201445442015338999706777774103-----------798423666520 Q gi|254780979|r 105 LPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRT-----------IEVGIERIHLEQ 150 (500) Q Consensus 105 lpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~-----------~~v~I~~i~lEE 150 (500) -|.|||+..+..+ .|.|-+-...+..+..+. .+=+|.||.||+ T Consensus 53 rPGG~Q~~A~~~~---~~rlyvLMh~g~~~tHkdpgteVWv~D~~t~krv~ri~L~h 106 (106) T 3c75_H 53 RPGGWQQTAYHRQ---SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH 106 (106) T ss_dssp EECSSSCEEEEGG---GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE T ss_pred CCCCCEEEEECCC---CCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEECCCC T ss_conf 5887067898479---99799995588742005899879999999997998954899 No 35 >>3cji_C Polyprotein; virus capsid protein structure, ATP-binding, cytoplasm, cytoplasmic vesicle, helicase, hydrolase, membrane, nucleotide-binding; 2.30A {Seneca valley virus} (C:) Probab=25.24 E-value=33 Score=14.13 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=18.5 Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCC Q ss_conf 0338989997888689865558842 Q gi|254780979|r 22 WEVVIGIEVHAQLSVVSKLFSGASV 46 (500) Q Consensus 22 ~e~vIGLEiH~qL~t~tKlFc~c~~ 46 (500) |=.-.|.+||||.|+ ||--++|-- T Consensus 109 ~l~R~G~~VhVQcNa-SkFHqG~Ll 132 (284) T 3cji_C 109 FLMKCGWQVQVQCNL-TQFHQGALL 132 (284) T ss_dssp EEEEEEEEEEEECCC-CTTCEEEEE T ss_pred HHHCCCEEEEEEECC-CHHCCCEEE T ss_conf 755088399999679-822110587 No 36 >>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} (A:) Probab=23.67 E-value=42 Score=13.40 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=50.3 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH Q ss_conf 8988643202688999888764113678988640243---------0245777765457887643387400064898999 Q gi|254780979|r 324 AKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNR---------DKKIVANWVINDLLGVLNRSGKSIEDTPISPNQL 394 (500) Q Consensus 324 ~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~~~~---------~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~l 394 (500) +.+..|.+--|+-+.-|..|++.-...++.+++.... =.+.+|.-|+.+|...+.+.. .......+..+ T Consensus 69 ~~F~~L~~V~GIGpk~Al~iL~~~~~~el~~aI~~~d~~~L~~ipGIG~KtA~rIi~eLk~k~~~~~--~~~~~~~~~~~ 146 (191) T 1ixr_A 69 ALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGKVPPHL--LAGEKVESEAA 146 (191) T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTTSCSCC------------- T ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCH T ss_conf 9999985758847788999985599999999998289998513888456889999999986425210--01123355568 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCC--CCHHHHHH Q ss_conf 9999888638731478999999998179--99889999 Q gi|254780979|r 395 GELIDLIIDGTISGKIAKDIFNILWEKG--GTPKEIVE 430 (500) Q Consensus 395 aeLi~li~~g~Is~~~aK~il~~l~~~~--~~p~~iie 430 (500) .+++..+.+=-.+...++.++..+...+ .+.++++. T Consensus 147 ~e~~~aL~~LGy~~~ea~~ai~~~~~~~~~~~~e~li~ 184 (191) T 1ixr_A 147 EEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIK 184 (191) T ss_dssp -------------------------------------- T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 99999999869999999999999984299999999999 No 37 >>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli} (A:317-427) Probab=23.55 E-value=42 Score=13.38 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=5.1 Q ss_pred HHCCCCHHHHHHHH Q ss_conf 20268899988876 Q gi|254780979|r 331 GEFGISLYDASVLV 344 (500) Q Consensus 331 ~~yGLs~~dA~~L~ 344 (500) ..||+++.+|+.++ T Consensus 63 ~~~~lse~QaeaIL 76 (111) T 1zvu_A 63 SRFGLTETQAEAIL 76 (111) T ss_dssp HSTTCCTTHHHHHH T ss_pred HHCCCCHHHHHHHH T ss_conf 86488777899999 No 38 >>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus WR} (A:) Probab=23.45 E-value=26 Score=14.93 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=7.5 Q ss_pred EEECCCEECCCC Q ss_conf 131132123767 Q gi|254780979|r 94 VFARKNYFYPDL 105 (500) Q Consensus 94 ~fdRK~YfYpDl 105 (500) +=-||+|||+-+ T Consensus 64 SKgrkQYfYGk~ 75 (77) T 1vcc_A 64 SKGRRQYFYGKM 75 (77) T ss_dssp TTSCEEEEECTT T ss_pred CCCCEEEEEECC T ss_conf 888357877213 No 39 >>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} (A:141-305) Probab=22.88 E-value=43 Score=13.29 Aligned_cols=95 Identities=21% Similarity=0.232 Sum_probs=48.5 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHH Q ss_conf 67898864024302457777654578876433874000648989999999888638731478999999998179998899 Q gi|254780979|r 349 IADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEI 428 (500) Q Consensus 349 la~~FE~v~~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~i 428 (500) +..+.|.+..-..-++.-+.+..++-|+|..+++--.-++..|..|-.|++-+ .+.||++.|--+++.|. .-+ T Consensus 40 ~~~lle~~k~l~s~~llkkv~~k~legylacreller~sk~e~k~ff~lfdqv-~ntitg~daflliq~~~------riv 112 (165) T 2gno_A 40 LSGLXESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVESKEFFALFDQV-TNTITGKDAFLLIQRLT------RII 112 (165) T ss_dssp HHHHHHHHHHSCHHHHTTTTTCSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHH-HHHSCTHHHHHHHHHHH------HHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH-HHHCCCCCHHHHHHHHH------HHH T ss_conf 65728898888899999999863544657799999998676889999999999-98561868999999999------999 Q ss_pred HHHCCCEECCCHHHHHHHHHHHH Q ss_conf 99639876189889999999999 Q gi|254780979|r 429 VEELGLRQVTDLSAIEKVVDEVI 451 (500) Q Consensus 429 ie~~gL~~isD~~eL~~iv~eVI 451 (500) ..++++..+.| ..--...+.|+ T Consensus 113 lhen~we~~~~-q~~vsfldsil 134 (165) T 2gno_A 113 LHENTWESVED-QKSVSFLDSIL 134 (165) T ss_dssp HHTSCCCSHHH-HHHHHHHHHHH T ss_pred HHHHCHHHHHH-HHHHHHHHHHH T ss_conf 86004304789-99999999999 No 40 >>2ajt_A L-arabinose isomerase; arabinose catabolism, carbohydrate metabolism, structural genomics, PSI, protein structure initiative; 2.60A {Escherichia coli} (A:1-174) Probab=22.35 E-value=44 Score=13.22 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=14.8 Q ss_pred ECCCCCCEEEEEECCCCCCHHHHHHHHHHH Q ss_conf 615786125763036527789999999999 Q gi|254780979|r 168 LNRSGVALMEIVTKPDMRSSLEAKAFLTKL 197 (500) Q Consensus 168 ~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l 197 (500) +|-.|.--+|||..|-+.|++++.++++++ T Consensus 38 l~~~~~~~~~iv~~g~v~t~~~~~~~~~~~ 67 (174) T 2ajt_A 38 LNTEAKLPCKLVLKPLGTTPDEITAICRDA 67 (174) T ss_dssp HHHHSCCSSEEEECCCBCSHHHHHHHHHHH T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHH T ss_conf 603578843797246517999999999971 No 41 >>2vj4_A Protein MXIC, MXIC; secretion regulation, transport protein, T3SS, plasmid, virulence, transport, type three secretion system; HET: MLY; 2.50A {Shigella flexneri} PDB: 2vix_A* 2vj5_A (A:92-170) Probab=21.92 E-value=11 Score=17.52 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=17.5 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 77778332778773126999999988 Q gi|254780979|r 290 ALDYRYFSEPDLLPLEIDEDFIRAIK 315 (500) Q Consensus 290 a~DYRyfPEPDLPpi~is~e~i~~i~ 315 (500) -.-||=|-|-|+|++.+-++||++.- T Consensus 30 R~~Yr~Fl~~d~~~~~~Y~~Wi~e~g 55 (79) T 2vj4_A 30 RACYRGFIMGNISTTDQYIEWLGNFG 55 (79) T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHC T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHC T ss_conf 99999998488779999999999839 No 42 >>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} (A:262-345,A:463-553) Probab=21.64 E-value=45 Score=13.12 Aligned_cols=65 Identities=26% Similarity=0.244 Sum_probs=39.5 Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCCCC------CCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEE Q ss_conf 03389899978886898655588424689------876520613026898887378999999999877829762442013 Q gi|254780979|r 22 WEVVIGIEVHAQLSVVSKLFSGASVNFGA------EPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVF 95 (500) Q Consensus 22 ~e~vIGLEiH~qL~t~tKlFc~c~~~~~~------~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~f 95 (500) |=.|=++.+-+.| =..||..-..+-++ .|||.+-.-+.+-|. +.+++.-...+| T Consensus 81 ~~~V~~vpvevrl--Yd~Lf~~~~Pe~~~d~~~~iNp~Sl~v~~a~~e~~------------------l~~~k~~d~~Qf 140 (175) T 1qtq_A 81 AMAVHALPVEIRL--YDRLFSVPNPGAADDFLSVINPESLVIKQGFAEPS------------------LKDAVAGKAFQF 140 (175) T ss_dssp ECEETCEEEEEEE--ECCSBSSSCGGGSTTGGGGBCTTSEEEEEEEECGG------------------GGGCCTTCEEEE T ss_pred CEEECCEEEEEEE--CCCCCCCCCCCCCCCHHHHCCCCCEEEEEEEECCH------------------HHHCCCCCEEEE T ss_conf 3168767469993--67455668988765365616878459997898641------------------763899997988 Q ss_pred ECCCEECCCCC Q ss_conf 11321237678 Q gi|254780979|r 96 ARKNYFYPDLP 106 (500) Q Consensus 96 dRK~YfYpDlp 106 (500) .|.-||.-|-+ T Consensus 141 eR~GYF~~D~~ 151 (175) T 1qtq_A 141 EREGYFCLDSR 151 (175) T ss_dssp TTTEEEESCTT T ss_pred EEEEEEEECCC T ss_conf 97469996888 No 43 >>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, protein structure initiative; 1.90A {Bacteroides uniformis atcc 8492} (A:84-171) Probab=21.33 E-value=38 Score=13.73 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=12.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 37678882014454420153389997 Q gi|254780979|r 102 YPDLPQGYQISQHDKPIVGEGKVSVS 127 (500) Q Consensus 102 YpDlpkgyQiTQ~~~Pi~~~G~l~~~ 127 (500) |--+||-|||| ||++.+ T Consensus 25 fivnpk~y~it---------gyie~p 41 (88) T 3dsm_A 25 FIINPKTYEIT---------GYIECP 41 (88) T ss_dssp EEEETTTTEEE---------EEEECT T ss_pred EEECCCCCEEE---------EEEECC T ss_conf 87758558488---------999707 No 44 >>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} (A:195-285) Probab=21.09 E-value=46 Score=13.04 Aligned_cols=34 Identities=12% Similarity=0.325 Sum_probs=20.0 Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 56764322011257543213766678862223540246 Q gi|254780979|r 207 CDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNVNSIR 244 (500) Q Consensus 207 sd~~meeGslR~DvNVSi~~~~~~~GtRvEIKNlnS~~ 244 (500) .-|.++.|++|..=.|-+.+ .+..++||++..++ T Consensus 23 v~G~v~sG~i~~gd~i~i~p----~~~~~~VksIe~~~ 56 (91) T 1wb1_A 23 VTGTINKGIVKVGDELKVLP----INMSTKVRSIQYFK 56 (91) T ss_dssp ECCCCCBSCCCSSEEECCTT----TCCCEEECCBCGGG T ss_pred EEEEECCCEECCCCEEEECC----CCCCCCCCEEECCC T ss_conf 78998468251586545336----64211221021024 No 45 >>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* (C:) Probab=20.07 E-value=25 Score=14.98 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=7.3 Q ss_pred CCHHHHHHHHHHHHCCC Q ss_conf 78899999999970788 Q gi|254780979|r 483 ANPSIVQKMLKEKLGIK 499 (500) Q Consensus 483 Adpk~v~~lL~e~L~~k 499 (500) +|.+.|.+.|.++++.+ T Consensus 527 ~~~~~~~~~~~~~~~~~ 543 (546) T 2wvr_C 527 ADLAHITARLAHQTRAE 543 (546) T ss_dssp ----------------- T ss_pred CCHHHHHHHHHHHHHHH T ss_conf 79999999999997665 No 46 >>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} (A:1-168) Probab=20.01 E-value=49 Score=12.89 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=24.6 Q ss_pred HHHHHHHHHHHHH-CCEECCCCEEECCCEECCCCCCC Q ss_conf 9999999987782-97624420131132123767888 Q gi|254780979|r 73 RCVQQAVMTGLGL-NAHINKYSVFARKNYFYPDLPQG 108 (500) Q Consensus 73 ~av~~ai~~~~al-~~~i~~~~~fdRK~YfYpDlpkg 108 (500) .|+..-+.++... +-.......|.||+|..|++-.+ T Consensus 89 ~~i~~ll~la~~~~g~~~v~~v~YsRknf~~P~~Q~~ 125 (168) T 1jl0_A 89 KALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGY 125 (168) T ss_dssp GGHHHHHHHHHHHHCCCEEEEEEEEEECCSSGGGCCT T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC T ss_conf 9899999999975387632689971136768122776 Done!