HHsearch results for GI: 254780979 and protein with PDBid: 2d6f_C
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=100.00 E-value=0 Score=1166.95 Aligned_cols=447 Identities=28% Similarity=0.457 Sum_probs=413.3
Q ss_pred CCCEE---EEEEEEEEECCCCCCCCCCCCCC-CCCCCCCCCHHHCCCCCCCCC---------------------------
Q ss_conf 80338---98999788868986555884246-898765206130268988873---------------------------
Q gi|254780979|r 21 DWEVV---IGIEVHAQLSVVSKLFSGASVNF-GAEPNTQVSFFDAAMPGMLPI--------------------------- 69 (500)
Q Consensus 21 ~~e~v---IGLEiH~qL~t~tKlFc~c~~~~-~~~pNt~v~~~~~g~PG~lP~--------------------------- 69 (500)
|||+| ||||||+||+|+|||||+|+++| +++|||+|||+|+|+||+||+
T Consensus 2 ~~e~v~~~IGLEiH~QL~T~tKlFc~c~~~~~~~~pn~~~~~~~~~~pg~lp~~~~aa~~~~~~~~~~~~~~~~~~~c~v 81 (619)
T 2d6f_C 2 DWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAFEEAMRKLHFHYENYHEETCLV 81 (619)
T ss_dssp CHHHHTCEEEEEEEEECCCSBCSSSCSBSSCCCSCCSEEEEEECCCC----------CTTTTGGGGEEEEEECTTTCCHH
T ss_pred CHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 85560780767997885799677889988778899986646545678765555448888876531001112456655433
Q ss_pred ---------CCHHHHHHHHHHHHHHCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf ---------78999999999877829762442013113212376788820144544201533899970677777410379
Q gi|254780979|r 70 ---------LNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIE 140 (500)
Q Consensus 70 ---------lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~ 140 (500)
+|++||++|+++|+||||+|++.++||||||||||||||||||| |||.||++++. .++
T Consensus 82 ~~~~~p~~~lN~~av~~ai~~~~aln~~i~~~~~f~RK~yfypdlpkgyQitq---~i~~~G~l~~~----------~~~ 148 (619)
T 2d6f_C 82 EADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQVIDGSNTGGFQRTG---LVATDGHLETP----------QGT 148 (619)
T ss_dssp HHTSSCCCCCCHHHHHHHHHHHHHTTCEECSEECCEEEECTTSSSSSSEEEEE---EEEEEEEEEET----------TEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCE---EEECCEEEEEC----------CCE
T ss_conf 35667888879999999999999739833635444003688999886764024---86157089724----------863
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC
Q ss_conf 84236665202310011567871488661578612576303652778999999999999986420456764322011257
Q gi|254780979|r 141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADV 220 (500)
Q Consensus 141 v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~Dv 220 (500)
|+|+||||||||||++|+. ++.|++||||||||||||||+|||+||+||++|+++|+++|||+|+|++ +|||||||
T Consensus 149 v~I~rihLEEDagK~~h~~-~~~~~~DlNRaGvPLiEIVTePd~~s~eea~~~~~~l~~ilr~~~v~~g---~GslR~Dv 224 (619)
T 2d6f_C 149 VKIENLCLEEDAARRIRET-GDGVVFRLDRLGIPLVEITTDPSMSDPQQLREVAYQIGQILRSTRVKRG---LGTIRQDL 224 (619)
T ss_dssp EEEEEEEEEECCCEEEEEE-TTEEEEETTSTTCEEEEEECCSCCCCHHHHHHHHHHHHHHHTTSSCCCS---STTCEEEE
T ss_pred EEEEEEEECCCCCCCCCCC-CCCCEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCE
T ss_conf 7578888614667233679-9972211556898648997168869999999999999999985254566---43113613
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC----------------------------------
Q ss_conf 5432137666788622235402465999999999999997313980----------------------------------
Q gi|254780979|r 221 NVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGH---------------------------------- 266 (500)
Q Consensus 221 NVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll~~G~~---------------------------------- 266 (500)
|||||+ ||||||||+|||++|++||+||+.||+++++.|+.
T Consensus 225 NVSvr~-----GtRvEIKNlnS~~~i~kAI~~Ei~RQ~~lle~~~~~~~~~~~~~~~~~dvt~~~~~~~s~~~~~~~~~~ 299 (619)
T 2d6f_C 225 NISIRD-----GARVEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQERGAVVEDKIFDVSEVFADTESRIISSAESVL 299 (619)
T ss_dssp EEECTT-----SCCEEEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTGGGTTCSCHHHHTSSEEE
T ss_pred EECCCC-----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEECCCCCCHHHHCCCCEEEECCCCCEE
T ss_conf 355579-----862023687656789999999999999999712201036742202324622220357426742565311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780979|r 267 -------------------------------------------------------------------------------- 266 (500)
Q Consensus 267 -------------------------------------------------------------------------------- 266 (500)
T Consensus 300 ~~~~r~~~~~~g~~~~~~~R~~~E~~dy~~~~g~~g~~hsdElp~ygi~~~et~~~r~~~~~~~~~~~~~~~~~~~~~~~ 379 (619)
T 2d6f_C 300 AVKLRGFDGLIGVEIQPGRRLGTEMADYAKKRGVSGIFHTDELPAYGITEEEVRGLRDAVGASQGDAVVMVAHERVTAEN 379 (619)
T ss_dssp EEEETTCTTTSSSEEETTEEHHHHHHHHHHTTSCSCCEETTTTTCSSCCHHHHHHHHHHTTCCSSSEEEEEEECHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHH
T ss_conf 01126766655543466532005766556642665333332233456413577877764299802335676160778888
Q ss_pred ---------------CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf ---------------03443233755433665303566777783327787731269999999885302483689886432
Q gi|254780979|r 267 ---------------IRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIG 331 (500)
Q Consensus 267 ---------------v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~ 331 (500)
|.||||+|+++ +.|.+|| |.+.||||||||||||+.|+++||++++++|||||+++++||++
T Consensus 380 a~~~v~~R~~~~~~~vpqETR~~~pd-~~t~~lR--p~~~dYRYfPEPDLppi~is~~~i~~ik~~lPELP~~~~~Rl~~ 456 (619)
T 2d6f_C 380 ALREVIRRAEMAIQGVPEETRKALPD-GNTQYLR--PLPTSSRMYLETDIPLFRIEDDLLEGIRRNLPELPSEKKERIMR 456 (619)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEEECSS-SCEEEEE--ECCCCCCEEECTTSCCEECCHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHCCCCCC-CCCCCCC--CCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 89999999985002452231146788-8753344--33555665889998876358899999998689998999999998
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH
Q ss_conf 026889998887641136789886402-4302457777654578876433874000648989999999888638731478
Q gi|254780979|r 332 EFGISLYDASVLVSDKSIADYFEKLAV-NRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKI 410 (500)
Q Consensus 332 ~yGLs~~dA~~L~~~~~la~~FE~v~~-~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is~~~ 410 (500)
+||||.++|.+|++ ..+++|||+++. ..+|+.+|||+.+++ +.||+.+.+++ +++|++|++|+.|+++|+||+++
T Consensus 457 ~ygLs~~~a~~L~~-~~~~~~Fe~~~~~~~~~k~~an~l~~~l-~~L~~~~~~i~--~v~~~~La~Li~li~~g~Is~~~ 532 (619)
T 2d6f_C 457 DYGLSEDLASQLVK-RNLVDEFEALTEFRVDTTVIASLLAYTL-RELRREGHDVD--GLGLDELRDAIKLLEVGKISKDA 532 (619)
T ss_dssp TTCCCHHHHHHHHH-TTCTTTC--------CCHHHHHTTTTHH-HHHTC-------------------------------
T ss_pred HHCCCHHHHHHHHC-CHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHCCCCCC--CCCHHHHHHHHHHHHCCCCCHHH
T ss_conf 72876899998851-3136899999751556033433569999-99986679867--79999999999999859956799
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99999999817999889999639876189889999999999839998997527213226589999997289778899999
Q gi|254780979|r 411 AKDIFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTGGKANPSIVQK 490 (500)
Q Consensus 411 aK~il~~l~~~~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~kgk~ka~gfLvGqVMK~tkGkAdpk~v~~ 490 (500)
||+||+.|++++++|++++++.||.|++| ++|+.+|++||++||++|++|++ +++|||||||||+|||||||+.|++
T Consensus 533 aK~vl~~m~~~~~~~~eii~~~gL~qisd-~eLe~iv~eVI~~Np~~V~~yk~--G~~gflvGqVMK~tkGkAnPk~V~~ 609 (619)
T 2d6f_C 533 LRDIVACMADEGLAAEDAARKLNLLLLAE-DEIESIIQEIVEGNLDMISERGM--GAMGPLMGQAMGRLRGRADGKVVNR 609 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCEECCH-HHHHHHHHHHHHHCHHHHHHHHC--CCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf 99999999857999999999769930588-99999999999979999999858--9834389999998679979999999
Q ss_pred HHHHHHCCC
Q ss_conf 999970788
Q gi|254780979|r 491 MLKEKLGIK 499 (500)
Q Consensus 491 lL~e~L~~k 499 (500)
+|+++|+-+
T Consensus 610 lL~ekL~~~ 618 (619)
T 2d6f_C 610 ILREKIQER 618 (619)
T ss_dssp ---------
T ss_pred HHHHHHHHH
T ss_conf 999999701