HHsearch results for GI: 254780979 and protein with PDBid: 2d6f_C

>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=100.00  E-value=0  Score=1166.95  Aligned_cols=447  Identities=28%  Similarity=0.457  Sum_probs=413.3

Q ss_pred             CCCEE---EEEEEEEEECCCCCCCCCCCCCC-CCCCCCCCCHHHCCCCCCCCC---------------------------
Q ss_conf             80338---98999788868986555884246-898765206130268988873---------------------------
Q gi|254780979|r   21 DWEVV---IGIEVHAQLSVVSKLFSGASVNF-GAEPNTQVSFFDAAMPGMLPI---------------------------   69 (500)
Q Consensus        21 ~~e~v---IGLEiH~qL~t~tKlFc~c~~~~-~~~pNt~v~~~~~g~PG~lP~---------------------------   69 (500)
                      |||+|   ||||||+||+|+|||||+|+++| +++|||+|||+|+|+||+||+                           
T Consensus         2 ~~e~v~~~IGLEiH~QL~T~tKlFc~c~~~~~~~~pn~~~~~~~~~~pg~lp~~~~aa~~~~~~~~~~~~~~~~~~~c~v   81 (619)
T 2d6f_C            2 DWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAFEEAMRKLHFHYENYHEETCLV   81 (619)
T ss_dssp             CHHHHTCEEEEEEEEECCCSBCSSSCSBSSCCCSCCSEEEEEECCCC----------CTTTTGGGGEEEEEECTTTCCHH
T ss_pred             CHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             85560780767997885799677889988778899986646545678765555448888876531001112456655433


Q ss_pred             ---------CCHHHHHHHHHHHHHHCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf             ---------78999999999877829762442013113212376788820144544201533899970677777410379
Q gi|254780979|r   70 ---------LNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIE  140 (500)
Q Consensus        70 ---------lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~  140 (500)
                               +|++||++|+++|+||||+|++.++|||||||||||||||||||   |||.||++++.          .++
T Consensus        82 ~~~~~p~~~lN~~av~~ai~~~~aln~~i~~~~~f~RK~yfypdlpkgyQitq---~i~~~G~l~~~----------~~~  148 (619)
T 2d6f_C           82 EADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQVIDGSNTGGFQRTG---LVATDGHLETP----------QGT  148 (619)
T ss_dssp             HHTSSCCCCCCHHHHHHHHHHHHHTTCEECSEECCEEEECTTSSSSSSEEEEE---EEEEEEEEEET----------TEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCE---EEECCEEEEEC----------CCE
T ss_conf             35667888879999999999999739833635444003688999886764024---86157089724----------863


Q ss_pred             EEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC
Q ss_conf             84236665202310011567871488661578612576303652778999999999999986420456764322011257
Q gi|254780979|r  141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADV  220 (500)
Q Consensus       141 v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~Dv  220 (500)
                      |+|+||||||||||++|+. ++.|++||||||||||||||+|||+||+||++|+++|+++|||+|+|++   +|||||||
T Consensus       149 v~I~rihLEEDagK~~h~~-~~~~~~DlNRaGvPLiEIVTePd~~s~eea~~~~~~l~~ilr~~~v~~g---~GslR~Dv  224 (619)
T 2d6f_C          149 VKIENLCLEEDAARRIRET-GDGVVFRLDRLGIPLVEITTDPSMSDPQQLREVAYQIGQILRSTRVKRG---LGTIRQDL  224 (619)
T ss_dssp             EEEEEEEEEECCCEEEEEE-TTEEEEETTSTTCEEEEEECCSCCCCHHHHHHHHHHHHHHHTTSSCCCS---STTCEEEE
T ss_pred             EEEEEEEECCCCCCCCCCC-CCCCEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCE
T ss_conf             7578888614667233679-9972211556898648997168869999999999999999985254566---43113613


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC----------------------------------
Q ss_conf             5432137666788622235402465999999999999997313980----------------------------------
Q gi|254780979|r  221 NVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGH----------------------------------  266 (500)
Q Consensus       221 NVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll~~G~~----------------------------------  266 (500)
                      |||||+     ||||||||+|||++|++||+||+.||+++++.|+.                                  
T Consensus       225 NVSvr~-----GtRvEIKNlnS~~~i~kAI~~Ei~RQ~~lle~~~~~~~~~~~~~~~~~dvt~~~~~~~s~~~~~~~~~~  299 (619)
T 2d6f_C          225 NISIRD-----GARVEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQERGAVVEDKIFDVSEVFADTESRIISSAESVL  299 (619)
T ss_dssp             EEECTT-----SCCEEEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTGGGTTCSCHHHHTSSEEE
T ss_pred             EECCCC-----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEECCCCCCHHHHCCCCEEEECCCCCEE
T ss_conf             355579-----862023687656789999999999999999712201036742202324622220357426742565311


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780979|r  267 --------------------------------------------------------------------------------  266 (500)
Q Consensus       267 --------------------------------------------------------------------------------  266 (500)
                                                                                                      
T Consensus       300 ~~~~r~~~~~~g~~~~~~~R~~~E~~dy~~~~g~~g~~hsdElp~ygi~~~et~~~r~~~~~~~~~~~~~~~~~~~~~~~  379 (619)
T 2d6f_C          300 AVKLRGFDGLIGVEIQPGRRLGTEMADYAKKRGVSGIFHTDELPAYGITEEEVRGLRDAVGASQGDAVVMVAHERVTAEN  379 (619)
T ss_dssp             EEEETTCTTTSSSEEETTEEHHHHHHHHHHTTSCSCCEETTTTTCSSCCHHHHHHHHHHTTCCSSSEEEEEEECHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHH
T ss_conf             01126766655543466532005766556642665333332233456413577877764299802335676160778888


Q ss_pred             ---------------CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             ---------------03443233755433665303566777783327787731269999999885302483689886432
Q gi|254780979|r  267 ---------------IRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIG  331 (500)
Q Consensus       267 ---------------v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~  331 (500)
                                     |.||||+|+++ +.|.+||  |.+.||||||||||||+.|+++||++++++|||||+++++||++
T Consensus       380 a~~~v~~R~~~~~~~vpqETR~~~pd-~~t~~lR--p~~~dYRYfPEPDLppi~is~~~i~~ik~~lPELP~~~~~Rl~~  456 (619)
T 2d6f_C          380 ALREVIRRAEMAIQGVPEETRKALPD-GNTQYLR--PLPTSSRMYLETDIPLFRIEDDLLEGIRRNLPELPSEKKERIMR  456 (619)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEEECSS-SCEEEEE--ECCCCCCEEECTTSCCEECCHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCHHHCCCCCC-CCCCCCC--CCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             89999999985002452231146788-8753344--33555665889998876358899999998689998999999998


Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH
Q ss_conf             026889998887641136789886402-4302457777654578876433874000648989999999888638731478
Q gi|254780979|r  332 EFGISLYDASVLVSDKSIADYFEKLAV-NRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKI  410 (500)
Q Consensus       332 ~yGLs~~dA~~L~~~~~la~~FE~v~~-~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is~~~  410 (500)
                      +||||.++|.+|++ ..+++|||+++. ..+|+.+|||+.+++ +.||+.+.+++  +++|++|++|+.|+++|+||+++
T Consensus       457 ~ygLs~~~a~~L~~-~~~~~~Fe~~~~~~~~~k~~an~l~~~l-~~L~~~~~~i~--~v~~~~La~Li~li~~g~Is~~~  532 (619)
T 2d6f_C          457 DYGLSEDLASQLVK-RNLVDEFEALTEFRVDTTVIASLLAYTL-RELRREGHDVD--GLGLDELRDAIKLLEVGKISKDA  532 (619)
T ss_dssp             TTCCCHHHHHHHHH-TTCTTTC--------CCHHHHHTTTTHH-HHHTC-------------------------------
T ss_pred             HHCCCHHHHHHHHC-CHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHCCCCCC--CCCHHHHHHHHHHHHCCCCCHHH
T ss_conf             72876899998851-3136899999751556033433569999-99986679867--79999999999999859956799


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             99999999817999889999639876189889999999999839998997527213226589999997289778899999
Q gi|254780979|r  411 AKDIFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTGGKANPSIVQK  490 (500)
Q Consensus       411 aK~il~~l~~~~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~kgk~ka~gfLvGqVMK~tkGkAdpk~v~~  490 (500)
                      ||+||+.|++++++|++++++.||.|++| ++|+.+|++||++||++|++|++  +++|||||||||+|||||||+.|++
T Consensus       533 aK~vl~~m~~~~~~~~eii~~~gL~qisd-~eLe~iv~eVI~~Np~~V~~yk~--G~~gflvGqVMK~tkGkAnPk~V~~  609 (619)
T 2d6f_C          533 LRDIVACMADEGLAAEDAARKLNLLLLAE-DEIESIIQEIVEGNLDMISERGM--GAMGPLMGQAMGRLRGRADGKVVNR  609 (619)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHCCCCHHHHHHHCCCEECCH-HHHHHHHHHHHHHCHHHHHHHHC--CCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf             99999999857999999999769930588-99999999999979999999858--9834389999998679979999999


Q ss_pred             HHHHHHCCC
Q ss_conf             999970788
Q gi|254780979|r  491 MLKEKLGIK  499 (500)
Q Consensus       491 lL~e~L~~k  499 (500)
                      +|+++|+-+
T Consensus       610 lL~ekL~~~  618 (619)
T 2d6f_C          610 ILREKIQER  618 (619)
T ss_dssp             ---------
T ss_pred             HHHHHHHHH
T ss_conf             999999701