HHsearch results for GI: 254780979 and protein with PDBid: 3h0l_B

>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=100.00  E-value=0  Score=1325.29  Aligned_cols=471  Identities=48%  Similarity=0.857  Sum_probs=458.9

Q ss_pred             CCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECCC
Q ss_conf             78033898999788868986555884246898765206130268988873789999999998778297624420131132
Q gi|254780979|r   20 GDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKN   99 (500)
Q Consensus        20 ~~~e~vIGLEiH~qL~t~tKlFc~c~~~~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK~   99 (500)
                      .+||+||||||||||+|+|||||+|+++|+++|||+|||||+|+||+||+||++||++|+++|+||||+|+++++|||||
T Consensus         3 ~~~e~viGLEiH~qL~T~~KlFc~c~~~~~~~pn~~~~~~~~g~pg~lP~ln~~av~~a~~~~~aln~~i~~~~~f~RK~   82 (478)
T 3h0l_B            3 EKYEAVIGLEIHVQMDTKTKMFCGCKVEFGAEPNTNVCPVCLGMPGALPIVNKRAVEYAIRASLALNCEVHEESVFARKH   82 (478)
T ss_dssp             CCEEEEEEEEEEEECCCSBCSSSSCBCCTTCCTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECEEEEE
T ss_pred             CCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf             88517888998878189967689999867888645517614658998763689999999999998398725352688887


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEE
Q ss_conf             12376788820144544201533899970677777410379842366652023100115678714886615786125763
Q gi|254780979|r  100 YFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIV  179 (500)
Q Consensus       100 YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIV  179 (500)
                      ||||||||||||||++.|||.||++++...++.     .++|+|+||||||||||++|+  +++|+|||||||+||||||
T Consensus        83 yfy~dlp~gyQiTq~~~pi~~~G~~~~~~~~g~-----~k~i~I~~i~lEEDa~k~~~~--~~~s~~D~NR~G~PLiEIv  155 (478)
T 3h0l_B           83 YFYPDLPKGYQISQYEKPLATNGWVELNLPNGE-----KKKVRIRRLHIEEDAGKNIHE--GDKTLVDLNRAGTPLMEIV  155 (478)
T ss_dssp             CCCTTCTTSEEEEESSSCSEEEEEEEEECTTSC-----EEEEEEEEEEEEECCCEEEEE--TTEEEEECSSTTCEEEEEE
T ss_pred             ECCCCCCCHHCCCCCCCCCCCCCEEEEEECCCC-----EEEEEEEEEEEECCCCCCCCC--CCCEEEECCCCCCCEEEEE
T ss_conf             417999830011045256033566999825896-----658967789950357766657--9961884146898537887


Q ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             0365277899999999999998642045676432201125754321376-667886222354024659999999999999
Q gi|254780979|r  180 TKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQI  258 (500)
Q Consensus       180 T~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~  258 (500)
                      |+|||+||+||++|+++|++||||+|+|||+||+|+||||||||||+.| .+|||||||||||||++|++||+||+.||+
T Consensus       156 TePd~~s~~ea~~~~~~l~~ilr~~g~~~~~me~GsiR~DvNVSir~~g~~~~G~RvEIKNlnS~~~i~~AI~~Ei~RQ~  235 (478)
T 3h0l_B          156 TEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTRVEIKNVNSFRFVQKALEYEIERQI  235 (478)
T ss_dssp             ECTTBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTCCSCCCCEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             05775689999999999999999709775665556423665525577888777765888588768999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             97313980034432337554336653035667777833277877312699999998853024836898864320268899
Q gi|254780979|r  259 AILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLY  338 (500)
Q Consensus       259 ~ll~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGLs~~  338 (500)
                      ++|++|+.|.||||+||+.++.|++||+||+++||||||||||||+.|+++||++|+++|||||+++++||+++|||+++
T Consensus       236 ~lle~G~~v~qeTr~~d~~~~~T~~~R~KE~a~DYRyfPEpDLPpi~i~~e~i~~ir~~lPelP~~~~~rl~~~ygls~~  315 (478)
T 3h0l_B          236 NVVEEGGEVVQETRTFDPQTGKTYPMRTKEEAEDYRYFPDPDLVPLKVKKEWIEEIKKNMPELPDQRFERLIKEYGLSEY  315 (478)
T ss_dssp             HHHHTTCCCCCCEEEEETTTTEEECCSCCCCCCCCCCEECTTSCCEECCHHHHHHHHHTCCCCHHHHHHHHHHHTCCCHH
T ss_pred             HHHHCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHH
T ss_conf             99985997302430047654257523554445567888888877743689999999986899838999999998399988


Q ss_pred             HHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             9888764113678988640-243024577776545788764338740006489899999998886387314789999999
Q gi|254780979|r  339 DASVLVSDKSIADYFEKLA-VNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNI  417 (500)
Q Consensus       339 dA~~L~~~~~la~~FE~v~-~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is~~~aK~il~~  417 (500)
                      +|.+|++++.+++|||++. ...+||.+|||+++++.+.+|+.+..+++++++|++|++|+.++++|+||+++||++|+.
T Consensus       316 ~a~~L~~~~~~~~~fe~~~~~~~~~k~~anwl~~el~~~l~~~~~~i~~~~i~~~~laeLi~lv~~g~It~~~aK~il~~  395 (478)
T 3h0l_B          316 EAGILVNHKEVGDFFEEAVRHFKEPKGIVNWLINDLLGLLRDKGISIEESPVKPEHLAELVKLIKEKVISTKIGKEVIKE  395 (478)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHHHHTCCGGGCSSCHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             99999731777888887764046704788999999999998758977766989999999999986487417789999999


Q ss_pred             HHHCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             981799988999963987618988999999999983999899752-7213226589999997289778899999999970
Q gi|254780979|r  418 LWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKL  496 (500)
Q Consensus       418 l~~~~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK~tkGkAdpk~v~~lL~e~L  496 (500)
                      |++++++|+++++++||.++||+++|+++|++||++||++|++|+ ||++++|||||||||+|||||||+.|+++|+++|
T Consensus       396 l~~~~~~p~eii~e~gl~~isD~~ele~iI~~Vi~~np~~V~~~k~Gk~kaig~LmGqVMK~tkGkAdpk~V~~lL~e~L  475 (478)
T 3h0l_B          396 MVETGKTPSQIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVGQVMRETRGKANPQVVNKVIRELV  475 (478)
T ss_dssp             HHHHCCCHHHHHHHHCC---------------------------------------------------------------
T ss_pred             HHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             98669999999997699414888999999999999798999999775076787899999998679879999999999998


Q ss_pred             C
Q ss_conf             7
Q gi|254780979|r  497 G  497 (500)
Q Consensus       497 ~  497 (500)
                      .
T Consensus       476 k  476 (478)
T 3h0l_B          476 K  476 (478)
T ss_dssp             -
T ss_pred             H
T ss_conf             4