HHsearch results for GI: 254780979 and protein with PDBid: 3h0l_B
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=100.00 E-value=0 Score=1325.29 Aligned_cols=471 Identities=48% Similarity=0.857 Sum_probs=458.9
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECCC
Q ss_conf 78033898999788868986555884246898765206130268988873789999999998778297624420131132
Q gi|254780979|r 20 GDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKN 99 (500)
Q Consensus 20 ~~~e~vIGLEiH~qL~t~tKlFc~c~~~~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK~ 99 (500)
.+||+||||||||||+|+|||||+|+++|+++|||+|||||+|+||+||+||++||++|+++|+||||+|+++++|||||
T Consensus 3 ~~~e~viGLEiH~qL~T~~KlFc~c~~~~~~~pn~~~~~~~~g~pg~lP~ln~~av~~a~~~~~aln~~i~~~~~f~RK~ 82 (478)
T 3h0l_B 3 EKYEAVIGLEIHVQMDTKTKMFCGCKVEFGAEPNTNVCPVCLGMPGALPIVNKRAVEYAIRASLALNCEVHEESVFARKH 82 (478)
T ss_dssp CCEEEEEEEEEEEECCCSBCSSSSCBCCTTCCTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECEEEEE
T ss_pred CCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 88517888998878189967689999867888645517614658998763689999999999998398725352688887
Q ss_pred EECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEE
Q ss_conf 12376788820144544201533899970677777410379842366652023100115678714886615786125763
Q gi|254780979|r 100 YFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIV 179 (500)
Q Consensus 100 YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIV 179 (500)
||||||||||||||++.|||.||++++...++. .++|+|+||||||||||++|+ +++|+|||||||+||||||
T Consensus 83 yfy~dlp~gyQiTq~~~pi~~~G~~~~~~~~g~-----~k~i~I~~i~lEEDa~k~~~~--~~~s~~D~NR~G~PLiEIv 155 (478)
T 3h0l_B 83 YFYPDLPKGYQISQYEKPLATNGWVELNLPNGE-----KKKVRIRRLHIEEDAGKNIHE--GDKTLVDLNRAGTPLMEIV 155 (478)
T ss_dssp CCCTTCTTSEEEEESSSCSEEEEEEEEECTTSC-----EEEEEEEEEEEEECCCEEEEE--TTEEEEECSSTTCEEEEEE
T ss_pred ECCCCCCCHHCCCCCCCCCCCCCEEEEEECCCC-----EEEEEEEEEEEECCCCCCCCC--CCCEEEECCCCCCCEEEEE
T ss_conf 417999830011045256033566999825896-----658967789950357766657--9961884146898537887
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0365277899999999999998642045676432201125754321376-667886222354024659999999999999
Q gi|254780979|r 180 TKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQI 258 (500)
Q Consensus 180 T~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~ 258 (500)
|+|||+||+||++|+++|++||||+|+|||+||+|+||||||||||+.| .+|||||||||||||++|++||+||+.||+
T Consensus 156 TePd~~s~~ea~~~~~~l~~ilr~~g~~~~~me~GsiR~DvNVSir~~g~~~~G~RvEIKNlnS~~~i~~AI~~Ei~RQ~ 235 (478)
T 3h0l_B 156 TEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTRVEIKNVNSFRFVQKALEYEIERQI 235 (478)
T ss_dssp ECTTBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTCCSCCCCEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 05775689999999999999999709775665556423665525577888777765888588768999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 97313980034432337554336653035667777833277877312699999998853024836898864320268899
Q gi|254780979|r 259 AILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLY 338 (500)
Q Consensus 259 ~ll~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGLs~~ 338 (500)
++|++|+.|.||||+||+.++.|++||+||+++||||||||||||+.|+++||++|+++|||||+++++||+++|||+++
T Consensus 236 ~lle~G~~v~qeTr~~d~~~~~T~~~R~KE~a~DYRyfPEpDLPpi~i~~e~i~~ir~~lPelP~~~~~rl~~~ygls~~ 315 (478)
T 3h0l_B 236 NVVEEGGEVVQETRTFDPQTGKTYPMRTKEEAEDYRYFPDPDLVPLKVKKEWIEEIKKNMPELPDQRFERLIKEYGLSEY 315 (478)
T ss_dssp HHHHTTCCCCCCEEEEETTTTEEECCSCCCCCCCCCCEECTTSCCEECCHHHHHHHHHTCCCCHHHHHHHHHHHTCCCHH
T ss_pred HHHHCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHH
T ss_conf 99985997302430047654257523554445567888888877743689999999986899838999999998399988
Q ss_pred HHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9888764113678988640-243024577776545788764338740006489899999998886387314789999999
Q gi|254780979|r 339 DASVLVSDKSIADYFEKLA-VNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNI 417 (500)
Q Consensus 339 dA~~L~~~~~la~~FE~v~-~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is~~~aK~il~~ 417 (500)
+|.+|++++.+++|||++. ...+||.+|||+++++.+.+|+.+..+++++++|++|++|+.++++|+||+++||++|+.
T Consensus 316 ~a~~L~~~~~~~~~fe~~~~~~~~~k~~anwl~~el~~~l~~~~~~i~~~~i~~~~laeLi~lv~~g~It~~~aK~il~~ 395 (478)
T 3h0l_B 316 EAGILVNHKEVGDFFEEAVRHFKEPKGIVNWLINDLLGLLRDKGISIEESPVKPEHLAELVKLIKEKVISTKIGKEVIKE 395 (478)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHHHHTCCGGGCSSCHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999731777888887764046704788999999999998758977766989999999999986487417789999999
Q ss_pred HHHCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 981799988999963987618988999999999983999899752-7213226589999997289778899999999970
Q gi|254780979|r 418 LWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKL 496 (500)
Q Consensus 418 l~~~~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK~tkGkAdpk~v~~lL~e~L 496 (500)
|++++++|+++++++||.++||+++|+++|++||++||++|++|+ ||++++|||||||||+|||||||+.|+++|+++|
T Consensus 396 l~~~~~~p~eii~e~gl~~isD~~ele~iI~~Vi~~np~~V~~~k~Gk~kaig~LmGqVMK~tkGkAdpk~V~~lL~e~L 475 (478)
T 3h0l_B 396 MVETGKTPSQIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVGQVMRETRGKANPQVVNKVIRELV 475 (478)
T ss_dssp HHHHCCCHHHHHHHHCC---------------------------------------------------------------
T ss_pred HHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98669999999997699414888999999999999798999999775076787899999998679879999999999998
Q ss_pred C
Q ss_conf 7
Q gi|254780979|r 497 G 497 (500)
Q Consensus 497 ~ 497 (500)
.
T Consensus 476 k 476 (478)
T 3h0l_B 476 K 476 (478)
T ss_dssp -
T ss_pred H
T ss_conf 4