HHSEARCH alignment of GI: 254780979 and SCOP domain: d1zq1c3

Alignment
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]}
Probab=100.00  E-value=0  Score=813.26  Aligned_cols=277  Identities=29%  Similarity=0.406  Sum_probs=254.9

Q ss_pred             CCCCCCEE---EEEEEEEEECCCCCCCCCCCCCCCCCCCC----------------------------------CCCHHH
Q ss_conf             54780338---98999788868986555884246898765----------------------------------206130
Q gi|254780979|r   18 TTGDWEVV---IGIEVHAQLSVVSKLFSGASVNFGAEPNT----------------------------------QVSFFD   60 (500)
Q Consensus        18 ~~~~~e~v---IGLEiH~qL~t~tKlFc~c~~~~~~~pNt----------------------------------~v~~~~   60 (500)
                      ++-||+.+   |||||||||+|+ ||||+|+++|+++||.                                  |+|++|
T Consensus         2 ~~~~y~~v~lkIGLEiHvQL~Tk-KlFc~cp~~~~~~~n~~~~~~~~p~~~~lg~~~pgal~~~nk~~~~~~~~n~~~~~   80 (321)
T d1zq1c3           2 DKFNYEELGLKVGLEIHRQLDTK-KLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKKGRVYVYEGNYELTD   80 (321)
T ss_dssp             CSSCTTTTTCCBEEEEEEEBSSB-CTTSSCBCCCCSCCCEEEEECCCCCEETTSCBCHHHHHHHHTTCEEEEEECTTTCB
T ss_pred             CCCCHHHHCCEEEEEEEEEECCC-EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCC
T ss_conf             75697996967878999987675-00689986456776533355556642334556855545554143200025777301


Q ss_pred             CCCCCCCCC--CCHHHHHHHHHHHHHHCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE
Q ss_conf             268988873--789999999998778297624420131132123767888201445442015338999706777774103
Q gi|254780979|r   61 AAMPGMLPI--LNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRT  138 (500)
Q Consensus        61 ~g~PG~lP~--lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~  138 (500)
                      +++||++|+  +|++||++|+++|+||||+|++.+.|||||||||||||||||||+   |+.+|++++..          
T Consensus        81 l~~~g~~p~~~pN~~Av~~ai~~~lalnc~i~~~~~f~RK~yfy~d~pkgyQitq~---i~~~G~~~~~~----------  147 (321)
T d1zq1c3          81 LVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNVSGFQRTAI---IATDGKVETPW----------  147 (321)
T ss_dssp             GGGTTSSCCCCCCHHHHHHHHHHHHHTTCEECSEECCEEEECSSSSSTTSEEEECE---EEEEEEECCTT----------
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHCCEEHHHCCCCCCEEECCCCCCCCCCCCC---CCCEEEEEEEE----------
T ss_conf             10579878766278899999999998598850220233530565876444447633---45503665430----------


Q ss_pred             EEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC
Q ss_conf             79842366652023100115678714886615786125763036527789999999999999864204567643220112
Q gi|254780979|r  139 IEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRA  218 (500)
Q Consensus       139 ~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~  218 (500)
                      ++|+|+||||||||||++|+. +..+++||||||+|||||||+|||+||+||++|+++|+++|||+|+|+  |++|||||
T Consensus       148 ~~i~I~rihLEEDagK~~h~~-~~~~lvD~NRaGvPLiEIVTePd~~s~~eA~~~~~~L~~il~~~~~~~--~~~GslR~  224 (321)
T d1zq1c3         148 GAVGIPTICLEEDAARIIERK-DKEVIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVK--RGLGTIRQ  224 (321)
T ss_dssp             CCEEEEEEEEEECCCEEEEEE-TTEEEEESTTTTCEEEEEECCTTBCSHHHHHHHHHHHHHHHHHTSCBC--CSSTTEEE
T ss_pred             CCCCCEEEEEEECCHHHCCCC-CCCEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEC
T ss_conf             235632689860100001145-873278512367514787515664568999999999998756544004--45653644


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             57543213766678862223540246599999999999999731398003----44323375543366530356677778
Q gi|254780979|r  219 DVNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIR----QETRLFDPSKNETRSLRTKEDALDYR  294 (500)
Q Consensus       219 DvNVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll~~G~~v~----qETR~~d~~~~~T~~mR~KE~a~DYR  294 (500)
                      ||||||+     +|||||||||||||+|++||+||+.||+++|+.|+++.    ||||+||+. +.|.+||+||+  |||
T Consensus       225 DvNVSv~-----~g~RvEIKNlnS~r~i~~AI~~Ei~RQ~~~l~~g~~~~~~~~qeTr~~~~~-~~T~~~R~ke~--dyR  296 (321)
T d1zq1c3         225 DLNVSIK-----GGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGPEETRRALPD-GNTEYMRPLPG--KAR  296 (321)
T ss_dssp             EEEECCT-----TSCCEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECTT-SCEEEEECCCC--CCC
T ss_pred             CCCCCCC-----CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCC-CCEEEEECCCC--CCC
T ss_conf             5431224-----333566503441577888889999999999974784125665411438799-98986305787--604


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             3327787731269999999885302
Q gi|254780979|r  295 YFSEPDLLPLEIDEDFIRAIKKQIP  319 (500)
Q Consensus       295 yfPEPDLPpi~is~e~i~~i~~~lP  319 (500)
                      |||||||||+.|+++||+.|+++||
T Consensus       297 YfPePDLppi~i~~~~i~~ik~~lP  321 (321)
T d1zq1c3         297 MYPETDIPPLRIPDDLKKKIKENLP  321 (321)
T ss_dssp             EEECTTSCCEECCHHHHHHHHTSCC
T ss_pred             CCCCCCCCCEECCHHHHHHHHHHCC
T ss_conf             3789997887769999999997494


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: GatB/GatE catalytic domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE
species: Pyrococcus abyssi [TaxId: 29292]