Query         gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 500
No_of_seqs    209 out of 1752
Neff          6.3 
Searched_HMMs 13730
Date          Wed Jun  1 11:10:43 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780979.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2f2ab2 d.128.1.5 (B:4-293) As 100.0       0       0  961.7  28.2  289   23-319     1-290 (290)
  2 d2d6fc3 d.128.1.5 (C:1-270,C:3 100.0       0       0  835.1  20.7  274   21-319     2-319 (319)
  3 d1zq1c3 d.128.1.5 (C:5-276,C:4 100.0       0       0  813.3  21.9  277   18-319     2-321 (321)
  4 d2f2ab1 a.182.1.2 (B:294-400)   99.9 2.9E-22 2.1E-26  181.1  11.6  106  320-425     1-107 (107)
  5 d1zq1c1 a.182.1.2 (C:457-512)   99.0 1.1E-10 8.1E-15   95.8   4.8   55  320-375     1-56  (56)
  6 d2d6fc1 a.182.1.2 (C:445-503)   99.0 1.3E-10 9.8E-15   95.1   3.4   56  320-376     1-57  (59)
  7 d1ng6a_ a.182.1.1 (A:) Hypothe  97.9 2.7E-05   2E-09   56.1   8.4   96  388-497    44-148 (148)
  8 d1zq1c3 d.128.1.5 (C:5-276,C:4  91.7 0.00074 5.4E-08   45.5  -6.7   44   64-112    58-104 (321)
  9 d1tola2 d.212.1.1 (A:125-216)   55.1     4.6 0.00033   17.6   3.0   63  186-254     1-63  (92)
 10 d1ltza_ d.178.1.1 (A:) Phenyla  54.7     3.2 0.00023   18.8   2.1   45  279-335   111-155 (277)
 11 d2j01s1 c.55.4.1 (S:23-108) Ri  51.1     3.6 0.00026   18.3   2.0   64   30-109    13-79  (86)
 12 d2d32a1 d.128.1.4 (A:1-518) Ga  50.5     6.6 0.00048   16.4   4.3   27  175-202    65-91  (518)
 13 d1mlwa_ d.178.1.1 (A:) Tryptop  39.3     4.2  0.0003   17.9   0.8   45  279-335   148-192 (290)
 14 d1n8fa_ c.1.10.4 (A:) 3-deoxy-  39.2     9.6  0.0007   15.2   3.4   79  174-265    46-131 (343)
 15 g1qqp.1 b.121.4.1 (4:,2:) Apht  39.1     6.9  0.0005   16.3   1.9   23  198-223   163-185 (289)
 16 d1j8ua_ d.178.1.1 (A:) Phenyla  37.6     4.6 0.00033   17.6   0.8   45  279-335   147-191 (307)
 17 d1toha_ d.178.1.1 (A:) Tyrosin  36.2       5 0.00036   17.3   0.8   45  279-335   148-192 (336)
 18 g1tme.1 b.121.4.1 (4:,2:) Thei  30.7     9.4 0.00069   15.3   1.4   24   22-46    118-141 (280)
 19 d1x75a1 e.11.1.1 (A:363-494) D  30.6      13 0.00094   14.3   3.7   13  332-344    85-97  (132)
 20 g1bev.1 b.121.4.1 (4:,2:) Bovi  30.3     8.9 0.00065   15.4   1.3   21   25-46    139-159 (284)
 21 d2tpta1 a.46.2.1 (A:1-70) Thym  28.9      14   0.001   14.1   6.2   41  389-429    17-57  (70)
 22 g1ncq.1 b.121.4.1 (D:,B:) Rhin  28.7      12 0.00087   14.5   1.7   24   22-46    133-156 (295)
 23 g2mev.1 b.121.4.1 (4:,2:) Meng  27.8      11 0.00083   14.7   1.4   21   24-45    157-177 (307)
 24 d1brwa1 a.46.2.1 (A:1-70) Pyri  27.7      14   0.001   13.9   5.6   41  389-429    16-56  (70)
 25 d1xrsb2 d.230.4.1 (B:33-84) D-  27.4      14   0.001   14.1   1.8   27   66-92      7-34  (52)
 26 d1o17a1 a.46.2.1 (A:1-70) Anth  26.3      15  0.0011   13.7   5.6   42  388-429    15-56  (70)
 27 d1khda1 a.46.2.1 (A:12-80) Ant  24.4      16  0.0012   13.5   5.4   41  389-429    15-55  (69)
 28 d1of8a_ c.1.10.4 (A:) 3-deoxy-  24.3      16  0.0012   13.5   3.4   29  174-203    46-75  (346)
 29 d1uoua1 a.46.2.1 (A:33-100) Th  23.4      17  0.0012   13.4   6.6   42  388-429    16-57  (68)
 30 d1jkea_ c.110.1.1 (A:) D-Tyr t  22.0      18  0.0013   13.2   2.8   46  180-228    89-137 (145)
 31 d1vcca_ d.121.1.1 (A:) Vaccini  21.9      12 0.00085   14.6   0.6   11   95-105    65-75  (77)
 32 g1d4m.1 b.121.4.1 (4:,2:) Huma  21.5      18  0.0013   13.3   1.4   23   23-46    160-182 (320)
 33 d1ngna_ a.96.1.2 (A:) Mismatch  21.3      19  0.0014   13.1   5.0   35  394-428    21-55  (144)
 34 d2pw6a1 c.56.6.1 (A:14-271) Un  21.2     7.3 0.00053   16.1  -0.6   41  257-307    88-129 (258)
 35 g1aym.1 b.121.4.1 (4:,2:) Rhin  20.9      18  0.0013   13.1   1.4   77   22-114   135-220 (296)

No 1  
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=100.00  E-value=0  Score=961.66  Aligned_cols=289  Identities=49%  Similarity=0.811  Sum_probs=281.2

Q ss_pred             CEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECCCEEC
Q ss_conf             33898999788868986555884246898765206130268988873789999999998778297624420131132123
Q gi|254780979|r   23 EVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFY  102 (500)
Q Consensus        23 e~vIGLEiH~qL~t~tKlFc~c~~~~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfY  102 (500)
                      |+|||||||+||+|+|||||+|+++|+++|||+|||||+|+||+||++|++||++|+++|+||||+|+++++||||||||
T Consensus         1 E~vIGLEiH~QL~T~tKlFc~c~~~~~~~pNt~vc~v~lg~PG~lPvlN~~av~~Ai~~~lalnc~I~~~~~fdRK~YfY   80 (290)
T d2f2ab2           1 ETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNYFY   80 (290)
T ss_dssp             CCEEEEEEEEECCCSBCSSSSSBSSCCSSTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECCEEEECCC
T ss_pred             CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEECCCCEEC
T ss_conf             98899998888289967778999867888645568602479986551579999999998887277113342311001004


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECC
Q ss_conf             76788820144544201533899970677777410379842366652023100115678714886615786125763036
Q gi|254780979|r  103 PDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKP  182 (500)
Q Consensus       103 pDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~P  182 (500)
                      |||||||||||++.|||.||+|++..++      ..++|+|+||||||||||++|+  ++.|+|||||||+|||||||+|
T Consensus        81 pDlpkgyQiTQ~~~pi~~~G~l~~~~~~------~~k~i~I~rihlEEDagK~~h~--~~~slvD~NRaGvPLiEIVTeP  152 (290)
T d2f2ab2          81 PDNPKAYQISQFDQPIGENGYIDIEVDG------ETKRIGITRLHMEEDAGKSTHK--GEYSLVDLNRQGTPLIEIVSEP  152 (290)
T ss_dssp             TTCTTSEEEECSSSCSEEEEEEEEEETT------EEEEEEEEEEEEEECCCEEEEC--SSEEEEECSSTTCEEEEEEECT
T ss_pred             CCCCCCHHHHCCCCCCCCCCEEEEECCC------CCEEEEEEEEEEEECCCCCCCC--CCCCEEEECCCCCCEEEEECCC
T ss_conf             6676144452133630056379664188------6169855368886012414347--9851785045787325653168


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5277899999999999998642045676432201125754321376-667886222354024659999999999999973
Q gi|254780979|r  183 DMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQIAIL  261 (500)
Q Consensus       183 d~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll  261 (500)
                      ||+||+||++|+++|++||||+|+|||+||+|||||||||||++.| +.||||||||||||||+|++||+||+.||+++|
T Consensus       153 d~~s~~eA~~~~~~L~~il~~lgvsd~~me~GslR~DvNVSi~~~g~~~~G~RvEIKNlnS~~~i~~aI~~Ei~RQ~~~l  232 (290)
T d2f2ab2         153 DIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEEL  232 (290)
T ss_dssp             TBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEECCCSSSCCCCCCCEEECCCCSTTTHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             86898999999999999864157644443333111465146557876666645886142478899999999999999987


Q ss_pred             HCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             1398003443233755433665303566777783327787731269999999885302
Q gi|254780979|r  262 EDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIP  319 (500)
Q Consensus       262 ~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lP  319 (500)
                      +.|++|.||||+||+.++.|++||+||+|+||||||||||||+.|+++||++++++||
T Consensus       233 ~~g~~i~qeTR~~d~~~~~T~~mRsKE~a~DYRYfPEPDLppi~i~~~~i~~ik~~lP  290 (290)
T d2f2ab2         233 LNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIP  290 (290)
T ss_dssp             TTTTCCCCCEEEEETTTTEEEEEECCCSCCCCCCEECTTSCCEECCHHHHHHHHTTCC
T ss_pred             HCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCC
T ss_conf             5399410004357567997964878887657687889997865559999999997495


No 2  
>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=100.00  E-value=0  Score=835.14  Aligned_cols=274  Identities=29%  Similarity=0.452  Sum_probs=260.6

Q ss_pred             CCCEE---EEEEEEEEECCCCCCCCCCCCCCC-CCCCCCCCHHHCCCCCCCCC---------------------------
Q ss_conf             80338---989997888689865558842468-98765206130268988873---------------------------
Q gi|254780979|r   21 DWEVV---IGIEVHAQLSVVSKLFSGASVNFG-AEPNTQVSFFDAAMPGMLPI---------------------------   69 (500)
Q Consensus        21 ~~e~v---IGLEiH~qL~t~tKlFc~c~~~~~-~~pNt~v~~~~~g~PG~lP~---------------------------   69 (500)
                      |||.|   |||||||||+|+|||||+|+++|+ ++||+++||+|+|+||+||+                           
T Consensus         2 d~e~v~~~IGLEiHvQL~T~tKlFc~c~~~~~~~~pN~~v~~~~~~~pg~lp~~n~~a~~~a~~~~~f~~~~~~~~~c~~   81 (319)
T d2d6fc3           2 DWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAFEEAMRKLHFHYENYHEETCLV   81 (319)
T ss_dssp             CHHHHTCEEEEEEEEECCCSBCSSSCSBSSCCCSCCSEEEEEECCCC----------CTTTTGGGGEEEEEECTTTCCHH
T ss_pred             CHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             84661772777997895799778889988667789985303355677654433349999876522333223567766510


Q ss_pred             ---------CCHHHHHHHHHHHHHHCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf             ---------78999999999877829762442013113212376788820144544201533899970677777410379
Q gi|254780979|r   70 ---------LNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIE  140 (500)
Q Consensus        70 ---------lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~  140 (500)
                               +|++|+++|+++|+||||+|++.++|||||||||||||||||||+   |+.+|++++.          .++
T Consensus        82 ~~~~~~~~plN~~av~~ai~~~~aln~~i~~~~~f~RK~y~y~dlpkgyQitq~---i~~~G~i~~~----------~~~  148 (319)
T d2d6fc3          82 EADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQVIDGSNTGGFQRTGL---VATDGHLETP----------QGT  148 (319)
T ss_dssp             HHTSSCCCCCCHHHHHHHHHHHHHTTCEECSEECCEEEECTTSSSSSSEEEEEE---EEEEEEEEET----------TEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCC---EECCCCCCCC----------CCC
T ss_conf             368888766488999998777775195745235422234345776665323551---2232662244----------660


Q ss_pred             EEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC
Q ss_conf             84236665202310011567871488661578612576303652778999999999999986420456764322011257
Q gi|254780979|r  141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADV  220 (500)
Q Consensus       141 v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~Dv  220 (500)
                      |+|+||||||||||++|+. ++.+++||||||+|||||||+|||+||+||++|+++|+++|||+|+|+|+   |||||||
T Consensus       149 I~I~rihLEEDagK~~h~~-~~~~~vD~NRaGvPLiEIVTePd~~s~~ea~~~~~~l~~il~~lgv~~~~---Gs~R~Dv  224 (319)
T d2d6fc3         149 VKIENLCLEEDAARRIRET-GDGVVFRLDRLGIPLVEITTDPSMSDPQQLREVAYQIGQILRSTRVKRGL---GTIRQDL  224 (319)
T ss_dssp             EEEEEEEEEECCCEEEEEE-TTEEEEETTSTTCEEEEEECCSCCCCHHHHHHHHHHHHHHHTTSSCCCSS---TTCEEEE
T ss_pred             EEEEEEEEECCCCCCCCCC-CCCEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCC
T ss_conf             5677899860432113567-88447513446850589986145378899999999998886522202565---4322444


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf             543213766678862223540246599999999999999731398003----4432337554336653035667777833
Q gi|254780979|r  221 NVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIR----QETRLFDPSKNETRSLRTKEDALDYRYF  296 (500)
Q Consensus       221 NVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll~~G~~v~----qETR~~d~~~~~T~~mR~KE~a~DYRyf  296 (500)
                      |||||+     |||||||||||||+|++||+||+.||+++++.|+.+.    ||||+||++ +.|..||+||+  |||||
T Consensus       225 NVSvr~-----GtRvEIKNlNSfr~i~~AI~yEi~RQ~~lle~g~~i~~~~~qetr~~~~~-~~t~~~R~ke~--dyRYf  296 (319)
T d2d6fc3         225 NISIRD-----GARVEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQERGPEETRKALPD-GNTQYLRPLPT--SSRMY  296 (319)
T ss_dssp             EEECTT-----SCCEEEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSS-SCEEEEEECCC--CCCEE
T ss_pred             CCCCCC-----CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCEEEECCCCC--CCCCC
T ss_conf             411146-----62576036650578888888999999999985996333775420037788-98976113664--44668


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             27787731269999999885302
Q gi|254780979|r  297 SEPDLLPLEIDEDFIRAIKKQIP  319 (500)
Q Consensus       297 PEPDLPpi~is~e~i~~i~~~lP  319 (500)
                      |||||||+.|+++||+.++++||
T Consensus       297 PEPDLppi~i~~~~Ie~ir~~lP  319 (319)
T d2d6fc3         297 LETDIPLFRIEDDLLEGIRRNLP  319 (319)
T ss_dssp             ECTTSCCEECCHHHHHHHHTTCC
T ss_pred             CCCCCCCEECCHHHHHHHHHHCC
T ss_conf             88997887679999999997594


No 3  
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]}
Probab=100.00  E-value=0  Score=813.26  Aligned_cols=277  Identities=29%  Similarity=0.406  Sum_probs=254.9

Q ss_pred             CCCCCCEE---EEEEEEEEECCCCCCCCCCCCCCCCCCCC----------------------------------CCCHHH
Q ss_conf             54780338---98999788868986555884246898765----------------------------------206130
Q gi|254780979|r   18 TTGDWEVV---IGIEVHAQLSVVSKLFSGASVNFGAEPNT----------------------------------QVSFFD   60 (500)
Q Consensus        18 ~~~~~e~v---IGLEiH~qL~t~tKlFc~c~~~~~~~pNt----------------------------------~v~~~~   60 (500)
                      ++-||+.+   |||||||||+|+ ||||+|+++|+++||.                                  |+|++|
T Consensus         2 ~~~~y~~v~lkIGLEiHvQL~Tk-KlFc~cp~~~~~~~n~~~~~~~~p~~~~lg~~~pgal~~~nk~~~~~~~~n~~~~~   80 (321)
T d1zq1c3           2 DKFNYEELGLKVGLEIHRQLDTK-KLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKKGRVYVYEGNYELTD   80 (321)
T ss_dssp             CSSCTTTTTCCBEEEEEEEBSSB-CTTSSCBCCCCSCCCEEEEECCCCCEETTSCBCHHHHHHHHTTCEEEEEECTTTCB
T ss_pred             CCCCHHHHCCEEEEEEEEEECCC-EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCC
T ss_conf             75697996967878999987675-00689986456776533355556642334556855545554143200025777301


Q ss_pred             CCCCCCCCC--CCHHHHHHHHHHHHHHCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE
Q ss_conf             268988873--789999999998778297624420131132123767888201445442015338999706777774103
Q gi|254780979|r   61 AAMPGMLPI--LNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRT  138 (500)
Q Consensus        61 ~g~PG~lP~--lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~  138 (500)
                      +++||++|+  +|++||++|+++|+||||+|++.+.|||||||||||||||||||+   |+.+|++++..          
T Consensus        81 l~~~g~~p~~~pN~~Av~~ai~~~lalnc~i~~~~~f~RK~yfy~d~pkgyQitq~---i~~~G~~~~~~----------  147 (321)
T d1zq1c3          81 LVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNVSGFQRTAI---IATDGKVETPW----------  147 (321)
T ss_dssp             GGGTTSSCCCCCCHHHHHHHHHHHHHTTCEECSEECCEEEECSSSSSTTSEEEECE---EEEEEEECCTT----------
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHCCEEHHHCCCCCCEEECCCCCCCCCCCCC---CCCEEEEEEEE----------
T ss_conf             10579878766278899999999998598850220233530565876444447633---45503665430----------


Q ss_pred             EEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC
Q ss_conf             79842366652023100115678714886615786125763036527789999999999999864204567643220112
Q gi|254780979|r  139 IEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRA  218 (500)
Q Consensus       139 ~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~  218 (500)
                      ++|+|+||||||||||++|+. +..+++||||||+|||||||+|||+||+||++|+++|+++|||+|+|+  |++|||||
T Consensus       148 ~~i~I~rihLEEDagK~~h~~-~~~~lvD~NRaGvPLiEIVTePd~~s~~eA~~~~~~L~~il~~~~~~~--~~~GslR~  224 (321)
T d1zq1c3         148 GAVGIPTICLEEDAARIIERK-DKEVIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVK--RGLGTIRQ  224 (321)
T ss_dssp             CCEEEEEEEEEECCCEEEEEE-TTEEEEESTTTTCEEEEEECCTTBCSHHHHHHHHHHHHHHHHHTSCBC--CSSTTEEE
T ss_pred             CCCCCEEEEEEECCHHHCCCC-CCCEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEC
T ss_conf             235632689860100001145-873278512367514787515664568999999999998756544004--45653644


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             57543213766678862223540246599999999999999731398003----44323375543366530356677778
Q gi|254780979|r  219 DVNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIR----QETRLFDPSKNETRSLRTKEDALDYR  294 (500)
Q Consensus       219 DvNVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll~~G~~v~----qETR~~d~~~~~T~~mR~KE~a~DYR  294 (500)
                      ||||||+     +|||||||||||||+|++||+||+.||+++|+.|+++.    ||||+||+. +.|.+||+||+  |||
T Consensus       225 DvNVSv~-----~g~RvEIKNlnS~r~i~~AI~~Ei~RQ~~~l~~g~~~~~~~~qeTr~~~~~-~~T~~~R~ke~--dyR  296 (321)
T d1zq1c3         225 DLNVSIK-----GGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGPEETRRALPD-GNTEYMRPLPG--KAR  296 (321)
T ss_dssp             EEEECCT-----TSCCEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECTT-SCEEEEECCCC--CCC
T ss_pred             CCCCCCC-----CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCC-CCEEEEECCCC--CCC
T ss_conf             5431224-----333566503441577888889999999999974784125665411438799-98986305787--604


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             3327787731269999999885302
Q gi|254780979|r  295 YFSEPDLLPLEIDEDFIRAIKKQIP  319 (500)
Q Consensus       295 yfPEPDLPpi~is~e~i~~i~~~lP  319 (500)
                      |||||||||+.|+++||+.|+++||
T Consensus       297 YfPePDLppi~i~~~~i~~ik~~lP  321 (321)
T d1zq1c3         297 MYPETDIPPLRIPDDLKKKIKENLP  321 (321)
T ss_dssp             EEECTTSCCEECCHHHHHHHHTSCC
T ss_pred             CCCCCCCCCEECCHHHHHHHHHHCC
T ss_conf             3789997887769999999997494


No 4  
>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=99.87  E-value=2.9e-22  Score=181.05  Aligned_cols=106  Identities=39%  Similarity=0.709  Sum_probs=101.7

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             48368988643202688999888764113678988640-24302457777654578876433874000648989999999
Q gi|254780979|r  320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLA-VNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELI  398 (500)
Q Consensus       320 elP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~-~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi  398 (500)
                      |||+++++||+++|||++++|.+|++++.+++|||+++ ...+||.+|||+++|+.++||+.+.++.+++++|++|++|+
T Consensus         1 ELP~~k~~R~~~~ygL~~~da~~L~~~~~l~~~FE~~~~~~~~~k~~aNwl~~el~~~ln~~~~~i~~~~i~~~~la~Li   80 (107)
T d2f2ab1           1 ELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMI   80 (107)
T ss_dssp             CCHHHHHHHHHHTTCCCHHHHHHHTSSHHHHHHHHHHHTTTCCHHHHHHHHHTHHHHHHHTTTCCTTTSSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             98699999999983959999999980399999999999854788999999999899998753785216986999999999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCCH
Q ss_conf             888638731478999999998179998
Q gi|254780979|r  399 DLIIDGTISGKIAKDIFNILWEKGGTP  425 (500)
Q Consensus       399 ~li~~g~Is~~~aK~il~~l~~~~~~p  425 (500)
                      .|+++|+||+++||+||++|+++|+|.
T Consensus        81 ~lv~~g~Is~~~aK~vl~~~~~~g~dA  107 (107)
T d2f2ab1          81 KLIEDGTMSSKIAKKVFPELAAKGGNA  107 (107)
T ss_dssp             HHHTTSSSCHHHHHHHHHHHHHTCSCS
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             999759755789999999999708999


No 5  
>d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=99.02  E-value=1.1e-10  Score=95.77  Aligned_cols=55  Identities=31%  Similarity=0.472  Sum_probs=49.7

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHH
Q ss_conf             483689886432026889998887641136789886-40243024577776545788
Q gi|254780979|r  320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEK-LAVNRDKKIVANWVINDLLG  375 (500)
Q Consensus       320 elP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~-v~~~~~pk~~Anwi~~el~~  375 (500)
                      |||+++++||+++|||+++||.+|++++.++ |||+ +..+.+||.+||||+++|.|
T Consensus         1 ELP~~k~~Ry~~eygLs~~dA~~l~~~~~~~-~Fee~v~~~~~pklaAnwl~~~l~g   56 (56)
T d1zq1c1           1 ELPQAKVERYVKEYKLDRSLAQTLVDDERDE-LFEELVSMGVKPSLAASILVVVLKG   56 (56)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHTSTHH-HHHHHHHTTCSTTHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHCCHHHH-HHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf             9879999999998397999999998775799-9999998099899989999998339


No 6  
>d2d6fc1 a.182.1.2 (C:445-503) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=98.97  E-value=1.3e-10  Score=95.14  Aligned_cols=56  Identities=32%  Similarity=0.475  Sum_probs=50.7

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHH
Q ss_conf             483689886432026889998887641136789886-402430245777765457887
Q gi|254780979|r  320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEK-LAVNRDKKIVANWVINDLLGV  376 (500)
Q Consensus       320 elP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~-v~~~~~pk~~Anwi~~el~~~  376 (500)
                      |||+++++||+++||||.+||.+|++++.+ +|||+ +..+.+||.+||||+++|.++
T Consensus         1 ELP~~k~~R~~~eygLs~~dA~~L~~~~~~-~~FEe~v~~~~~pk~~Anwi~~~l~~L   57 (59)
T d2d6fc1           1 ELPSEKKERIMRDYGLSEDLASQLVKRNLV-DEFEALTEFRVDTTVIASLLAYTLREL   57 (59)
T ss_dssp             CCHHHHHHHHHHTTCCCHHHHHHHHHTTCT-TTC--------CCHHHHHTTTTHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHCCCHH-HHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             987999999999809499999999827469-999999980899999999999999986


No 7  
>d1ng6a_ a.182.1.1 (A:) Hypothetical protein YqeY {Bacillus subtilis [TaxId: 1423]}
Probab=97.92  E-value=2.7e-05  Score=56.08  Aligned_cols=96  Identities=17%  Similarity=0.260  Sum_probs=67.6

Q ss_pred             CCCHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHCCC--------CHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHH
Q ss_conf             489899999998-886387314789999999981799--------98899996398761898899999999998399989
Q gi|254780979|r  388 PISPNQLGELID-LIIDGTISGKIAKDIFNILWEKGG--------TPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNV  458 (500)
Q Consensus       388 ~i~p~~laeLi~-li~~g~Is~~~aK~il~~l~~~~~--------~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V  458 (500)
                      .++-+.+-.++. ++.+       .++-++.+-..+.        .--+++++.-..+.| +++++.+|+++|+++..  
T Consensus        44 ~~~d~~v~~vi~k~vKq-------r~es~e~y~~~~r~dl~e~e~~Ei~il~~yLP~~ls-eeEl~~~v~~~i~e~~a--  113 (148)
T d1ng6a_          44 SLTEDEELTVLSRELKQ-------RKDSLQEFSNANRLDLVDKVQKELDILEVYLPEQLS-EEELRTIVNETIAEVGA--  113 (148)
T ss_dssp             CCCHHHHHHHHHHHHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHGGGSCCCCC-HHHHHHHHHHHHHHTTC--
T ss_pred             CCCHHHHHHHHHHHHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHCC--
T ss_conf             99989999999999998-------898999988436288999999888999997124688-77899999999998299--


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf             975272132265899999972897788999999999707
Q gi|254780979|r  459 ARIATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKLG  497 (500)
Q Consensus       459 ~~~kgk~ka~gfLvGqVMK~tkGkAdpk~v~~lL~e~L~  497 (500)
                          ..++-+|..||.+|+..+|+||++.|+++++++|.
T Consensus       114 ----~~~kdmG~vM~~l~~~~~g~~Dg~~vs~~vk~~Ls  148 (148)
T d1ng6a_         114 ----SSKADMGKVMGAIMPKVKGKADGSLINKLVSSQLS  148 (148)
T ss_dssp             ----CSGGGHHHHHHHHHHHHTTTSCHHHHHHHHHHHCC
T ss_pred             ----CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf             ----75100889999999882798889999999998709


No 8  
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]}
Probab=91.67  E-value=0.00074  Score=45.50  Aligned_cols=44  Identities=20%  Similarity=0.136  Sum_probs=28.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECCCEECCC---CCCCCCCC
Q ss_conf             98887378999999999877829762442013113212376---78882014
Q gi|254780979|r   64 PGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPD---LPQGYQIS  112 (500)
Q Consensus        64 PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpD---lpkgyQiT  112 (500)
                      ||+||++|+.++     .....||.+.....||+++||||+   ...++++.
T Consensus        58 pgal~~~nk~~~-----~~~~~n~~~~~l~~~g~~p~~~pN~~Av~~ai~~~  104 (321)
T d1zq1c3          58 PAALEEFKKGRV-----YVYEGNYELTDLVYMDEEPPRGPDREALEVALQIA  104 (321)
T ss_dssp             HHHHHHHHTTCE-----EEEEECTTTCBGGGTTSSCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCC-----CEECCCCCCCCEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             555455541432-----00025777301105798787662788999999999


No 9  
>d1tola2 d.212.1.1 (A:125-216) TolA {Escherichia coli [TaxId: 562]}
Probab=55.06  E-value=4.6  Score=17.58  Aligned_cols=63  Identities=13%  Similarity=0.085  Sum_probs=40.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             789999999999999864204567643220112575432137666788622235402465999999999
Q gi|254780979|r  186 SSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEA  254 (500)
Q Consensus       186 s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi  254 (500)
                      |..|+-.|...|+..++..=.-...+ .| +.|.|.|.+.+.|.-.+    ++..+.-....+++.-=+
T Consensus         1 s~~ev~~Y~~~I~~~I~~~w~~p~~~-~g-~~~~v~i~l~~~G~v~~----v~~sSG~~~fd~sa~~Ai   63 (92)
T d1tola2           1 SGADINNYAGQIKSAIESKFYDASSY-AG-KTCTLRIKLAPDGMLLD----IKPEGGDPALCQAALAAA   63 (92)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCTTGGGG-TT-CCEEEEEEECTTSCEEE----EEEEEECHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCC-CC-CEEEEEEEEECCCCEEE----EEECCCCHHHHHHHHHHH
T ss_conf             97799999999999999754899656-89-99999999967843898----674599799999999999


No 10 
>d1ltza_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Chromobacterium violaceum [TaxId: 536]}
Probab=54.66  E-value=3.2  Score=18.76  Aligned_cols=45  Identities=22%  Similarity=0.377  Sum_probs=35.6

Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf             336653035667777833277877312699999998853024836898864320268
Q gi|254780979|r  279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI  335 (500)
Q Consensus       279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL  335 (500)
                      -.|..+|+.+.-.   |-||||+         +-++---+|.|-+.....|...||.
T Consensus       111 p~t~~IR~~~~~d---YtpEPDi---------fHd~~GHvPlL~np~fAdf~q~~G~  155 (277)
T d1ltza_         111 PVTWWLREPHQLD---YLQEPDV---------FHDLFGHVPLLINPVFADYLEAYGK  155 (277)
T ss_dssp             EEECSCCCTTCSS---SCCSCCH---------HHHHHHTGGGGGSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCC---CCCCHHH---------HHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             1000015744345---5544007---------8898657864268899999999999


No 11 
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}
Probab=51.15  E-value=3.6  Score=18.35  Aligned_cols=64  Identities=17%  Similarity=0.048  Sum_probs=34.4

Q ss_pred             EEEEEC--CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHH-HHCCEECCCCEEECCCEECCCCC
Q ss_conf             978886--898655588424689876520613026898887378999999999877-82976244201311321237678
Q gi|254780979|r   30 VHAQLS--VVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGL-GLNAHINKYSVFARKNYFYPDLP  106 (500)
Q Consensus        30 iH~qL~--t~tKlFc~c~~~~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~-al~~~i~~~~~fdRK~YfYpDlp  106 (500)
                      |++||-  ++.+-.|++++..-..-+.+               .+.|-+.+-.+|. |..-.|. ...|||.-|.|.---
T Consensus        13 iyaQiIDd~~~~tl~s~St~~k~~k~~~---------------~~~A~~vG~~la~~ak~~gI~-~v~FDR~g~~YHGrv   76 (86)
T d2j01s1          13 IYAQIIDDEKGVTLVSASSLALKLKGNK---------------TEVARQVGRALAEKALALGIK-QVAFDRGPYKYHGRV   76 (86)
T ss_dssp             BCEEEEETTTTEEEEEECSTTTCCCSCH---------------HHHHHHHHHHHHHHHHHTSCC-CCBCCCSTTCSSSSC
T ss_pred             EEEEEEECCCCEEEEEEECCCHHHCCCC---------------HHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCHH
T ss_conf             8999997679869999821311104877---------------899999999999999987998-899948997220299


Q ss_pred             CCC
Q ss_conf             882
Q gi|254780979|r  107 QGY  109 (500)
Q Consensus       107 kgy  109 (500)
                      |.|
T Consensus        77 ka~   79 (86)
T d2j01s1          77 KAL   79 (86)
T ss_dssp             CCC
T ss_pred             HHH
T ss_conf             999


No 12 
>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA {Escherichia coli [TaxId: 562]}
Probab=50.48  E-value=6.6  Score=16.42  Aligned_cols=27  Identities=19%  Similarity=0.193  Sum_probs=13.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             2576303652778999999999999986
Q gi|254780979|r  175 LMEIVTKPDMRSSLEAKAFLTKLRSILR  202 (500)
Q Consensus       175 LiEIVT~Pd~~s~~ea~~~~~~l~~ilr  202 (500)
                      |+|+||- ...|++++..|+..|+..+.
T Consensus        65 ~lE~iTp-~~~~~~~~l~~L~~lh~~~~   91 (518)
T d2d32a1          65 LLEFITP-VDGDIEHMLTFMRDLHRYTA   91 (518)
T ss_dssp             EEEEECC-CBSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCC-CCCCHHHHHHHHHHHHHHHH
T ss_conf             7661789-99999999999999999999


No 13 
>d1mlwa_ d.178.1.1 (A:) Tryptophan hydroxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.33  E-value=4.2  Score=17.89  Aligned_cols=45  Identities=27%  Similarity=0.493  Sum_probs=34.6

Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf             336653035667777833277877312699999998853024836898864320268
Q gi|254780979|r  279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI  335 (500)
Q Consensus       279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL  335 (500)
                      -.|..+|+.+.-.   |-||||+         +-++---+|.|-+.....|..++|+
T Consensus       148 p~t~~IR~~~~~~---YtpEPDi---------~HEl~GHvPlLadp~fA~f~q~~G~  192 (290)
T d1mlwa_         148 HCTQYVRHSSDPF---YTPEPDT---------CHELLGHVPLLAEPSFAQFSQEIGL  192 (290)
T ss_dssp             EECCCCCCTTCTT---CCSSCCH---------HHHHHHTHHHHTSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCC---CCCCHHH---------HHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             1012554777776---5644459---------9998576601289899999999989


No 14 
>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Escherichia coli, phenylalanine-regulated isozyme [TaxId: 562]}
Probab=39.15  E-value=9.6  Score=15.21  Aligned_cols=79  Identities=22%  Similarity=0.213  Sum_probs=40.3

Q ss_pred             CEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC------CHHHHH
Q ss_conf             1257630365-277899999999999998642045676432201125754321376667886222354------024659
Q gi|254780979|r  174 ALMEIVTKPD-MRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNV------NSIRFL  246 (500)
Q Consensus       174 PLiEIVT~Pd-~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~~~~GtRvEIKNl------nS~~~i  246 (500)
                      +|+ +|+.|| +|+|+.|.+|++.|..+-.-.  +|.-  .-.||+=.        ++-.|.|--|++      +.--.|
T Consensus        46 RlL-VVvGPCSIHD~~aa~eYA~rL~~l~~~~--~d~l--~iVMRvYf--------EKPRTtvGWKGli~DP~ldgs~~I  112 (343)
T d1n8fa_          46 RLL-VVIGPCSIHDPVAAKEYATRLLALREEL--KDEL--EIVMRVYF--------EKPRTTVGWKGLINDPHMDNSFQI  112 (343)
T ss_dssp             CEE-EEEECSSCCCHHHHHHHHHHHHHHHHHT--TTTE--EEEEECCC--------CCCCSSSSCCCTTTCTTSSSCCCH
T ss_pred             CEE-EEECCCCCCCHHHHHHHHHHHHHHHHHH--CCCE--EEEEEECC--------CCCCCCCCCCHHCCCCCCCCCCCH
T ss_conf             769-9976886799899999999999999864--3553--99652211--------487766784021267566788672


Q ss_pred             HHHHHHHHHHHHHHHHCCC
Q ss_conf             9999999999999731398
Q gi|254780979|r  247 GLAIEYEARRQIAILEDGG  265 (500)
Q Consensus       247 ~~AI~yEi~RQ~~ll~~G~  265 (500)
                      .+-+..-..=..++.+.|-
T Consensus       113 ~~Gl~~aR~ll~~i~~~gl  131 (343)
T d1n8fa_         113 NDGLRIARKLLLDINDSGL  131 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCC
T ss_conf             0139999999999997499


No 15 
>g1qqp.1 b.121.4.1 (4:,2:) Aphthovirus (Foot-and-mouth disease virus) coat proteins {FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]}
Probab=39.12  E-value=6.9  Score=16.26  Aligned_cols=23  Identities=4%  Similarity=-0.058  Sum_probs=11.8

Q ss_pred             HHHHHHHCCCCCCCCCCEEECCCCCC
Q ss_conf             99986420456764322011257543
Q gi|254780979|r  198 RSILRYLGTCDGNMEEGSMRADVNVS  223 (500)
Q Consensus       198 ~~ilr~~gisd~~meeGslR~DvNVS  223 (500)
                      ++.++|---.+|+|   .+|+-+|-|
T Consensus       163 ~~~~~~h~~~r~g~---~v~Vqvnas  185 (289)
T g1qqp.1         163 GSLTDSYAYMRNGW---DVEVTAVGN  185 (289)
T ss_dssp             HHHHHHEEEEEEEE---EEEEEECCC
T ss_pred             HHHHHHHHHHCCCE---EEEEEEECC
T ss_conf             99988664011878---999999688


No 16 
>d1j8ua_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.61  E-value=4.6  Score=17.57  Aligned_cols=45  Identities=24%  Similarity=0.458  Sum_probs=34.6

Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf             336653035667777833277877312699999998853024836898864320268
Q gi|254780979|r  279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI  335 (500)
Q Consensus       279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL  335 (500)
                      -.|..+|+.+.-   -|-||||+         +-++---+|.|-+.....|..++|+
T Consensus       147 p~TqyIR~~~~~---~YtpEPDi---------~HEl~GHvPlLadp~fA~f~q~iG~  191 (307)
T d1j8ua_         147 HCTQYIRHGSKP---MYTPEPDI---------CHELLGHVPLFSDRSFAQFSQEIGL  191 (307)
T ss_dssp             EECCCCCCTTCT---TCCSSCCH---------HHHHHHTHHHHTSHHHHHHHHHHHH
T ss_pred             EECEEECCCCCC---CCCCCHHH---------HHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             201021576667---65642668---------9998677611188899999999999


No 17 
>d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=36.25  E-value=5  Score=17.31  Aligned_cols=45  Identities=22%  Similarity=0.363  Sum_probs=33.7

Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf             336653035667777833277877312699999998853024836898864320268
Q gi|254780979|r  279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI  335 (500)
Q Consensus       279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL  335 (500)
                      -.|..+|+.+.-   -|-||||+         +-++---+|.|-+.....|..++|+
T Consensus       148 p~TqyIR~~~~~---~YtpEPDi---------~HEl~GHvPlLadp~fA~f~q~~G~  192 (336)
T d1toha_         148 QCTQYIRHASSP---MHSPEPDC---------CHELLGHVPMLADRTFAQFSQDIGL  192 (336)
T ss_dssp             EECCCCCCTTCT---TCCSSCCH---------HHHHHHTHHHHTSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCC---CCCCCHHH---------HHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             135432366666---65642459---------9998575620189899999999999


No 18 
>g1tme.1 b.121.4.1 (4:,2:) Theilovirus capsid proteins {Theiler's murine encephalomyelitis virus, strain da [TaxId: 12124]}
Probab=30.71  E-value=9.4  Score=15.27  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=19.0

Q ss_pred             CCEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             0338989997888689865558842
Q gi|254780979|r   22 WEVVIGIEVHAQLSVVSKLFSGASV   46 (500)
Q Consensus        22 ~e~vIGLEiH~qL~t~tKlFc~c~~   46 (500)
                      |=.-.|.+||||.|+ ||--++|--
T Consensus       118 ~l~R~G~~VhVQcNa-SkFHqG~Ll  141 (280)
T g1tme.1         118 YLCKTGWRVQVQCNA-SQFHAGSLL  141 (280)
T ss_dssp             EEEEEEEEEEEECCC-CTTCEEEEE
T ss_pred             HHHHCCEEEEEEECC-CHHHHHEEE
T ss_conf             756088299999679-855300586


No 19 
>d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=30.57  E-value=13  Score=14.25  Aligned_cols=13  Identities=8%  Similarity=0.163  Sum_probs=6.8

Q ss_pred             HCCCCHHHHHHHH
Q ss_conf             0268899988876
Q gi|254780979|r  332 EFGISLYDASVLV  344 (500)
Q Consensus       332 ~yGLs~~dA~~L~  344 (500)
                      .|+||+.+|+.++
T Consensus        85 ~~~LSe~QA~AIL   97 (132)
T d1x75a1          85 LYYLTEQQAQAIL   97 (132)
T ss_dssp             EEECCHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
T ss_conf             5127899999999


No 20 
>g1bev.1 b.121.4.1 (4:,2:) Bovine enterovirus coat proteins {Bovine enterovirus, VG-5-27 [TaxId: 12064]}
Probab=30.28  E-value=8.9  Score=15.45  Aligned_cols=21  Identities=29%  Similarity=0.377  Sum_probs=17.4

Q ss_pred             EEEEEEEEEECCCCCCCCCCCC
Q ss_conf             8989997888689865558842
Q gi|254780979|r   25 VIGIEVHAQLSVVSKLFSGASV   46 (500)
Q Consensus        25 vIGLEiH~qL~t~tKlFc~c~~   46 (500)
                      -.|.+||||.|. ||-.++|--
T Consensus       139 R~G~~v~VQ~NA-SkFH~G~Ll  159 (284)
T g1bev.1         139 RGGWAVHVQCNA-TKFHQGTLL  159 (284)
T ss_dssp             EEEEEEEEECCC-CTTEEEEEE
T ss_pred             ECCEEEEEEEEC-CCCCCCEEE
T ss_conf             577699999979-846500699


No 21 
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=28.90  E-value=14  Score=14.06  Aligned_cols=41  Identities=24%  Similarity=0.166  Sum_probs=22.3

Q ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             89899999998886387314789999999981799988999
Q gi|254780979|r  389 ISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIV  429 (500)
Q Consensus       389 i~p~~laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~ii  429 (500)
                      ++.+....++..+-+|+++..+.-..|-.+...|.++++++
T Consensus        17 Ls~~E~~~~~~~i~~g~~~d~qi~afL~al~~kGet~~Ei~   57 (70)
T d2tpta1          17 LSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERV   57 (70)
T ss_dssp             CCHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             69999999999998488459999999999998599999999


No 22 
>g1ncq.1 b.121.4.1 (D:,B:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14) [TaxId: 12131]}
Probab=28.71  E-value=12  Score=14.52  Aligned_cols=24  Identities=29%  Similarity=0.278  Sum_probs=18.8

Q ss_pred             CCEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             0338989997888689865558842
Q gi|254780979|r   22 WEVVIGIEVHAQLSVVSKLFSGASV   46 (500)
Q Consensus        22 ~e~vIGLEiH~qL~t~tKlFc~c~~   46 (500)
                      |=.-.|-+||||.|+ ||--++|--
T Consensus       133 ~l~R~G~~V~VQcNa-SkFHqG~Ll  156 (295)
T g1ncq.1         133 SLGRSGYTVHVQCNA-TKFHSGCLL  156 (295)
T ss_dssp             EEEEEEEEEEEECCC-CTTCEEEEE
T ss_pred             HHHCCCEEEEEEECC-CHHCCCEEE
T ss_conf             645087199999778-810010588


No 23 
>g2mev.1 b.121.4.1 (4:,2:) Mengo encephalomyocarditis virus coat proteins {Mengovirus [TaxId: 12107]}
Probab=27.79  E-value=11  Score=14.67  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=15.4

Q ss_pred             EEEEEEEEEEECCCCCCCCCCC
Q ss_conf             3898999788868986555884
Q gi|254780979|r   24 VVIGIEVHAQLSVVSKLFSGAS   45 (500)
Q Consensus        24 ~vIGLEiH~qL~t~tKlFc~c~   45 (500)
                      .-.|.+||||-|+ +|--++|-
T Consensus       157 ~R~G~~VhVQcNa-SkFHqG~L  177 (307)
T g2mev.1         157 VKTGWRVQVQCNA-SQFHAGSL  177 (307)
T ss_dssp             EEEEEEEEEECCC-CTTCEEEE
T ss_pred             HHCCCEEEEEECC-CCCCCCEE
T ss_conf             6188189999759-80000079


No 24 
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=27.68  E-value=14  Score=13.91  Aligned_cols=41  Identities=12%  Similarity=0.204  Sum_probs=26.3

Q ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             89899999998886387314789999999981799988999
Q gi|254780979|r  389 ISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIV  429 (500)
Q Consensus       389 i~p~~laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~ii  429 (500)
                      ++.+....++.-+-+|++|..+.-..|-.+...|.++++++
T Consensus        16 Ls~~E~~~~~~~i~~g~~s~~qi~afL~al~~kG~t~~Ei~   56 (70)
T d1brwa1          16 LTKEEIEWIVRGYTNGDIPDYQMSALAMAIYFRGMTEEETA   56 (70)
T ss_dssp             CCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             79999999999998599999999999999988599999999


No 25 
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=27.37  E-value=14  Score=14.06  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=20.8

Q ss_pred             CCCC-CCHHHHHHHHHHHHHHCCEECCC
Q ss_conf             8873-78999999999877829762442
Q gi|254780979|r   66 MLPI-LNGRCVQQAVMTGLGLNAHINKY   92 (500)
Q Consensus        66 ~lP~-lN~~av~~ai~~~~al~~~i~~~   92 (500)
                      |||| .+++|.+.|.+++.-++-+-+..
T Consensus         7 TLPVp~g~~A~eAAk~la~kMGl~~p~V   34 (52)
T d1xrsb2           7 TLPLKNNERSAEAAKQIALKMGLEEPSV   34 (52)
T ss_dssp             EESSCSSHHHHHHHHHHHHTTSSCCCEE
T ss_pred             EEECCCCHHHHHHHHHHHHHHCCCCHHE
T ss_conf             8407998478999999999828996023


No 26 
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=26.32  E-value=15  Score=13.74  Aligned_cols=42  Identities=31%  Similarity=0.413  Sum_probs=26.1

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             489899999998886387314789999999981799988999
Q gi|254780979|r  388 PISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIV  429 (500)
Q Consensus       388 ~i~p~~laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~ii  429 (500)
                      .++.+....++..+-+|.++....-..|-.+...|.++++++
T Consensus        15 ~Ls~~e~~~~~~~i~~g~~s~~qiaafL~al~~kGet~~Ei~   56 (70)
T d1o17a1          15 DLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIV   56 (70)
T ss_dssp             CCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             979999999999998699999999999999998199999999


No 27 
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=24.41  E-value=16  Score=13.50  Aligned_cols=41  Identities=17%  Similarity=0.323  Sum_probs=23.0

Q ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             89899999998886387314789999999981799988999
Q gi|254780979|r  389 ISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIV  429 (500)
Q Consensus       389 i~p~~laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~ii  429 (500)
                      ++.+...+++..+-+|.++....-..|-.+...|.++++++
T Consensus        15 Ls~ee~~~~~~~i~~g~~~d~qiaafL~al~~kg~t~dEi~   55 (69)
T d1khda1          15 MTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIA   55 (69)
T ss_dssp             CCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             79999999999998699999999999999998199999999


No 28 
>d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]}
Probab=24.33  E-value=16  Score=13.49  Aligned_cols=29  Identities=10%  Similarity=0.299  Sum_probs=20.9

Q ss_pred             CEEEEEECCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf             1257630365-27789999999999999864
Q gi|254780979|r  174 ALMEIVTKPD-MRSSLEAKAFLTKLRSILRY  203 (500)
Q Consensus       174 PLiEIVT~Pd-~~s~~ea~~~~~~l~~ilr~  203 (500)
                      .|+ +|..|| +|+++.|.+|++.|..+-.-
T Consensus        46 RlL-VIvGPCSIHD~~aa~eYA~rL~~l~~~   75 (346)
T d1of8a_          46 RVL-VIVGPCSIHDLEAAQEYALRLKKLSDE   75 (346)
T ss_dssp             SEE-EEEECSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CEE-EEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             769-997688679999999999999998886


No 29 
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.35  E-value=17  Score=13.36  Aligned_cols=42  Identities=12%  Similarity=0.267  Sum_probs=27.2

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             489899999998886387314789999999981799988999
Q gi|254780979|r  388 PISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIV  429 (500)
Q Consensus       388 ~i~p~~laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~ii  429 (500)
                      .++.+.+..++.-+-+|+++....-..|-.+...|.++++++
T Consensus        16 ~Ls~~E~~~~~~~i~~g~~s~~qi~afL~al~~kG~t~~Ei~   57 (68)
T d1uoua1          16 RLSEADIRGFVAAVVNGSAQGAQIGAMLMAIRLRGMDLEETS   57 (68)
T ss_dssp             CCCHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             999999999999998499889999999999998299999999


No 30 
>d1jkea_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Escherichia coli [TaxId: 562]}
Probab=22.02  E-value=18  Score=13.17  Aligned_cols=46  Identities=24%  Similarity=0.334  Sum_probs=35.6

Q ss_pred             ECCCCCC---HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             0365277---899999999999998642045676432201125754321376
Q gi|254780979|r  180 TKPDMRS---SLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG  228 (500)
Q Consensus       180 T~Pd~~s---~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~  228 (500)
                      +.|+++.   |++|+..-.++-..++..+.   .-+.|.+-+|-+||+-.+|
T Consensus        89 ~rPsF~~Aa~p~~A~~ly~~f~~~l~~~~~---~v~~G~FGA~M~V~l~NDG  137 (145)
T d1jkea_          89 MRPSFSKGASPDRAEALYDYFVERCRQQEM---NTQTGRFAADMQVSLVNDG  137 (145)
T ss_dssp             SSCBCSSBCCHHHHHHHHHHHHHHHHHTTC---CEEECCTTSCEEEEEEEEE
T ss_pred             CCCEECCCCCHHHHHHHHHHHHHHHHHCCC---CCEECCCCCCCEEEEEECC
T ss_conf             772040469978999999999999986699---8556888988489999869


No 31 
>d1vcca_ d.121.1.1 (A:) Vaccinia DNA topoisomerase I, 9 kDa N-terminal fragment {Vaccinia virus, strain WR [TaxId: 10245]}
Probab=21.94  E-value=12  Score=14.58  Aligned_cols=11  Identities=36%  Similarity=0.896  Sum_probs=6.9

Q ss_pred             EECCCEECCCC
Q ss_conf             31132123767
Q gi|254780979|r   95 FARKNYFYPDL  105 (500)
Q Consensus        95 fdRK~YfYpDl  105 (500)
                      =-||+|||+-+
T Consensus        65 KgrkQYfYGk~   75 (77)
T d1vcca_          65 KGRRQYFYGKM   75 (77)
T ss_dssp             TSCEEEEECTT
T ss_pred             CCCEEEEEECC
T ss_conf             88357877213


No 32 
>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human coxsackievirus A9 [TaxId: 12067]}
Probab=21.53  E-value=18  Score=13.27  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=17.1

Q ss_pred             CEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             338989997888689865558842
Q gi|254780979|r   23 EVVIGIEVHAQLSVVSKLFSGASV   46 (500)
Q Consensus        23 e~vIGLEiH~qL~t~tKlFc~c~~   46 (500)
                      -.-.|-+||||-|+ ||--++|--
T Consensus       160 l~R~G~~VhVQcNa-SkFHqG~Ll  182 (320)
T g1d4m.1         160 LGRAGYTIHVQCNA-SKFHQGCLL  182 (320)
T ss_dssp             EEEEEEEEEEECCC-CTTCEEEEE
T ss_pred             HHCCCEEEEEEECC-CHHCCCEEE
T ss_conf             14277599999789-843011688


No 33 
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.32  E-value=19  Score=13.07  Aligned_cols=35  Identities=26%  Similarity=0.174  Sum_probs=14.6

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             99999888638731478999999998179998899
Q gi|254780979|r  394 LGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEI  428 (500)
Q Consensus       394 laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~i  428 (500)
                      +.-||..+-....+..++..++..+++.-.+|+++
T Consensus        21 f~~LV~~ILsqqT~~~~v~~v~~~L~~~~pt~e~l   55 (144)
T d1ngna_          21 WKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVA   55 (144)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf             99999999986097999999999999867710211


No 34 
>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]}
Probab=21.18  E-value=7.3  Score=16.06  Aligned_cols=41  Identities=15%  Similarity=0.270  Sum_probs=26.4

Q ss_pred             HHHHHHCCC-CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999731398-003443233755433665303566777783327787731269
Q gi|254780979|r  257 QIAILEDGG-HIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEID  307 (500)
Q Consensus       257 Q~~ll~~G~-~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is  307 (500)
                      -.++++..+ .+...+|+||  -|+.++|+        .+||+.|+|.|.||
T Consensus        88 i~~~l~~~gi~~~~~~~glD--HG~~vPL~--------~m~p~~~~pvv~iS  129 (258)
T d2pw6a1          88 LVELLAPIPVTLDKEAWGFD--HGSWGVLI--------KMYPDADIPMVQLS  129 (258)
T ss_dssp             HHHHHTTSCEEEESSCCCCC--HHHHHHHH--------HHSTTCCSCEEEEE
T ss_pred             HHHHHCCCCCCCCCCCCCCC--CCCEEEEE--------EECCCCCCEEEEEE
T ss_conf             99874357842357776654--45423466--------73576661289973


No 35 
>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human rhinovirus 16, (HRV-16) [TaxId: 31708]}
Probab=20.89  E-value=18  Score=13.11  Aligned_cols=77  Identities=17%  Similarity=0.189  Sum_probs=39.4

Q ss_pred             CCEEEEEEEEEEECCCCCCCCCCCC-----CC--CC--CCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCC
Q ss_conf             0338989997888689865558842-----46--89--876520613026898887378999999999877829762442
Q gi|254780979|r   22 WEVVIGIEVHAQLSVVSKLFSGASV-----NF--GA--EPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKY   92 (500)
Q Consensus        22 ~e~vIGLEiH~qL~t~tKlFc~c~~-----~~--~~--~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~   92 (500)
                      |-.-.|-+||||.|+ ||--++|--     ||  +.  ..+.+ ..+...+||.              .+...+......
T Consensus       135 ~l~R~Gw~V~VQcNa-SkFH~G~LlV~~VPE~~~~~~~~~~~~-~~~~~t~~~~--------------~~~~~~~~~~~~  198 (296)
T g1aym.1         135 FLGRSGYTVHVQCNA-SKFHQGTLLVVMIPEHQLATVNKGNVN-AGYKYTHPGE--------------AGREVGTQVENE  198 (296)
T ss_dssp             EEEEEEEEEEEECCC-CTTCEEEEEEEEEETCCCCCBSSTTCC-CCGGGGCCGG--------------GCEETTTSCCCT
T ss_pred             HHHHCCEEEEEEECC-CCCCCCEEEEEECCCEEECCCCCCCCC-CCHHCCCCCC--------------CCCCCCCCCCCC
T ss_conf             776187199999758-866530689998323132356777645-3000158776--------------674135433455


Q ss_pred             CEEECCCEECCCCCCCCCCCCC
Q ss_conf             0131132123767888201445
Q gi|254780979|r   93 SVFARKNYFYPDLPQGYQISQH  114 (500)
Q Consensus        93 ~~fdRK~YfYpDlpkgyQiTQ~  114 (500)
                      ..+..++||-.|-..=.|.|=|
T Consensus       199 ~~~~~~~~~~~~g~~~~qltif  220 (296)
T g1aym.1         199 KQPSDDNWLNFDGTLLGNLLIF  220 (296)
T ss_dssp             TCCCCCGGGTTTTBCGGGGGGS
T ss_pred             CCCCCCCEECCCCEECCCEEEC
T ss_conf             6656542254588230340254


Done!