Query gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus Liberibacter asiaticus str. psy62] Match_columns 500 No_of_seqs 209 out of 1752 Neff 6.3 Searched_HMMs 13730 Date Wed Jun 1 11:10:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780979.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2f2ab2 d.128.1.5 (B:4-293) As 100.0 0 0 961.7 28.2 289 23-319 1-290 (290) 2 d2d6fc3 d.128.1.5 (C:1-270,C:3 100.0 0 0 835.1 20.7 274 21-319 2-319 (319) 3 d1zq1c3 d.128.1.5 (C:5-276,C:4 100.0 0 0 813.3 21.9 277 18-319 2-321 (321) 4 d2f2ab1 a.182.1.2 (B:294-400) 99.9 2.9E-22 2.1E-26 181.1 11.6 106 320-425 1-107 (107) 5 d1zq1c1 a.182.1.2 (C:457-512) 99.0 1.1E-10 8.1E-15 95.8 4.8 55 320-375 1-56 (56) 6 d2d6fc1 a.182.1.2 (C:445-503) 99.0 1.3E-10 9.8E-15 95.1 3.4 56 320-376 1-57 (59) 7 d1ng6a_ a.182.1.1 (A:) Hypothe 97.9 2.7E-05 2E-09 56.1 8.4 96 388-497 44-148 (148) 8 d1zq1c3 d.128.1.5 (C:5-276,C:4 91.7 0.00074 5.4E-08 45.5 -6.7 44 64-112 58-104 (321) 9 d1tola2 d.212.1.1 (A:125-216) 55.1 4.6 0.00033 17.6 3.0 63 186-254 1-63 (92) 10 d1ltza_ d.178.1.1 (A:) Phenyla 54.7 3.2 0.00023 18.8 2.1 45 279-335 111-155 (277) 11 d2j01s1 c.55.4.1 (S:23-108) Ri 51.1 3.6 0.00026 18.3 2.0 64 30-109 13-79 (86) 12 d2d32a1 d.128.1.4 (A:1-518) Ga 50.5 6.6 0.00048 16.4 4.3 27 175-202 65-91 (518) 13 d1mlwa_ d.178.1.1 (A:) Tryptop 39.3 4.2 0.0003 17.9 0.8 45 279-335 148-192 (290) 14 d1n8fa_ c.1.10.4 (A:) 3-deoxy- 39.2 9.6 0.0007 15.2 3.4 79 174-265 46-131 (343) 15 g1qqp.1 b.121.4.1 (4:,2:) Apht 39.1 6.9 0.0005 16.3 1.9 23 198-223 163-185 (289) 16 d1j8ua_ d.178.1.1 (A:) Phenyla 37.6 4.6 0.00033 17.6 0.8 45 279-335 147-191 (307) 17 d1toha_ d.178.1.1 (A:) Tyrosin 36.2 5 0.00036 17.3 0.8 45 279-335 148-192 (336) 18 g1tme.1 b.121.4.1 (4:,2:) Thei 30.7 9.4 0.00069 15.3 1.4 24 22-46 118-141 (280) 19 d1x75a1 e.11.1.1 (A:363-494) D 30.6 13 0.00094 14.3 3.7 13 332-344 85-97 (132) 20 g1bev.1 b.121.4.1 (4:,2:) Bovi 30.3 8.9 0.00065 15.4 1.3 21 25-46 139-159 (284) 21 d2tpta1 a.46.2.1 (A:1-70) Thym 28.9 14 0.001 14.1 6.2 41 389-429 17-57 (70) 22 g1ncq.1 b.121.4.1 (D:,B:) Rhin 28.7 12 0.00087 14.5 1.7 24 22-46 133-156 (295) 23 g2mev.1 b.121.4.1 (4:,2:) Meng 27.8 11 0.00083 14.7 1.4 21 24-45 157-177 (307) 24 d1brwa1 a.46.2.1 (A:1-70) Pyri 27.7 14 0.001 13.9 5.6 41 389-429 16-56 (70) 25 d1xrsb2 d.230.4.1 (B:33-84) D- 27.4 14 0.001 14.1 1.8 27 66-92 7-34 (52) 26 d1o17a1 a.46.2.1 (A:1-70) Anth 26.3 15 0.0011 13.7 5.6 42 388-429 15-56 (70) 27 d1khda1 a.46.2.1 (A:12-80) Ant 24.4 16 0.0012 13.5 5.4 41 389-429 15-55 (69) 28 d1of8a_ c.1.10.4 (A:) 3-deoxy- 24.3 16 0.0012 13.5 3.4 29 174-203 46-75 (346) 29 d1uoua1 a.46.2.1 (A:33-100) Th 23.4 17 0.0012 13.4 6.6 42 388-429 16-57 (68) 30 d1jkea_ c.110.1.1 (A:) D-Tyr t 22.0 18 0.0013 13.2 2.8 46 180-228 89-137 (145) 31 d1vcca_ d.121.1.1 (A:) Vaccini 21.9 12 0.00085 14.6 0.6 11 95-105 65-75 (77) 32 g1d4m.1 b.121.4.1 (4:,2:) Huma 21.5 18 0.0013 13.3 1.4 23 23-46 160-182 (320) 33 d1ngna_ a.96.1.2 (A:) Mismatch 21.3 19 0.0014 13.1 5.0 35 394-428 21-55 (144) 34 d2pw6a1 c.56.6.1 (A:14-271) Un 21.2 7.3 0.00053 16.1 -0.6 41 257-307 88-129 (258) 35 g1aym.1 b.121.4.1 (4:,2:) Rhin 20.9 18 0.0013 13.1 1.4 77 22-114 135-220 (296) No 1 >d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Probab=100.00 E-value=0 Score=961.66 Aligned_cols=289 Identities=49% Similarity=0.811 Sum_probs=281.2 Q ss_pred CEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECCCEEC Q ss_conf 33898999788868986555884246898765206130268988873789999999998778297624420131132123 Q gi|254780979|r 23 EVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFY 102 (500) Q Consensus 23 e~vIGLEiH~qL~t~tKlFc~c~~~~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfY 102 (500) |+|||||||+||+|+|||||+|+++|+++|||+|||||+|+||+||++|++||++|+++|+||||+|+++++|||||||| T Consensus 1 E~vIGLEiH~QL~T~tKlFc~c~~~~~~~pNt~vc~v~lg~PG~lPvlN~~av~~Ai~~~lalnc~I~~~~~fdRK~YfY 80 (290) T d2f2ab2 1 ETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNYFY 80 (290) T ss_dssp CCEEEEEEEEECCCSBCSSSSSBSSCCSSTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECCEEEECCC T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEECCCCEEC T ss_conf 98899998888289967778999867888645568602479986551579999999998887277113342311001004 Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECC Q ss_conf 76788820144544201533899970677777410379842366652023100115678714886615786125763036 Q gi|254780979|r 103 PDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKP 182 (500) Q Consensus 103 pDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~P 182 (500) |||||||||||++.|||.||+|++..++ ..++|+|+||||||||||++|+ ++.|+|||||||+|||||||+| T Consensus 81 pDlpkgyQiTQ~~~pi~~~G~l~~~~~~------~~k~i~I~rihlEEDagK~~h~--~~~slvD~NRaGvPLiEIVTeP 152 (290) T d2f2ab2 81 PDNPKAYQISQFDQPIGENGYIDIEVDG------ETKRIGITRLHMEEDAGKSTHK--GEYSLVDLNRQGTPLIEIVSEP 152 (290) T ss_dssp TTCTTSEEEECSSSCSEEEEEEEEEETT------EEEEEEEEEEEEEECCCEEEEC--SSEEEEECSSTTCEEEEEEECT T ss_pred CCCCCCHHHHCCCCCCCCCCEEEEECCC------CCEEEEEEEEEEEECCCCCCCC--CCCCEEEECCCCCCEEEEECCC T ss_conf 6676144452133630056379664188------6169855368886012414347--9851785045787325653168 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 5277899999999999998642045676432201125754321376-667886222354024659999999999999973 Q gi|254780979|r 183 DMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQIAIL 261 (500) Q Consensus 183 d~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll 261 (500) ||+||+||++|+++|++||||+|+|||+||+|||||||||||++.| +.||||||||||||||+|++||+||+.||+++| T Consensus 153 d~~s~~eA~~~~~~L~~il~~lgvsd~~me~GslR~DvNVSi~~~g~~~~G~RvEIKNlnS~~~i~~aI~~Ei~RQ~~~l 232 (290) T d2f2ab2 153 DIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEEL 232 (290) T ss_dssp TBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEECCCSSSCCCCCCCEEECCCCSTTTHHHHHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH T ss_conf 86898999999999999864157644443333111465146557876666645886142478899999999999999987 Q ss_pred HCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 1398003443233755433665303566777783327787731269999999885302 Q gi|254780979|r 262 EDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIP 319 (500) Q Consensus 262 ~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lP 319 (500) +.|++|.||||+||+.++.|++||+||+|+||||||||||||+.|+++||++++++|| T Consensus 233 ~~g~~i~qeTR~~d~~~~~T~~mRsKE~a~DYRYfPEPDLppi~i~~~~i~~ik~~lP 290 (290) T d2f2ab2 233 LNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIP 290 (290) T ss_dssp TTTTCCCCCEEEEETTTTEEEEEECCCSCCCCCCEECTTSCCEECCHHHHHHHHTTCC T ss_pred HCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCC T ss_conf 5399410004357567997964878887657687889997865559999999997495 No 2 >d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=100.00 E-value=0 Score=835.14 Aligned_cols=274 Identities=29% Similarity=0.452 Sum_probs=260.6 Q ss_pred CCCEE---EEEEEEEEECCCCCCCCCCCCCCC-CCCCCCCCHHHCCCCCCCCC--------------------------- Q ss_conf 80338---989997888689865558842468-98765206130268988873--------------------------- Q gi|254780979|r 21 DWEVV---IGIEVHAQLSVVSKLFSGASVNFG-AEPNTQVSFFDAAMPGMLPI--------------------------- 69 (500) Q Consensus 21 ~~e~v---IGLEiH~qL~t~tKlFc~c~~~~~-~~pNt~v~~~~~g~PG~lP~--------------------------- 69 (500) |||.| |||||||||+|+|||||+|+++|+ ++||+++||+|+|+||+||+ T Consensus 2 d~e~v~~~IGLEiHvQL~T~tKlFc~c~~~~~~~~pN~~v~~~~~~~pg~lp~~n~~a~~~a~~~~~f~~~~~~~~~c~~ 81 (319) T d2d6fc3 2 DWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAFEEAMRKLHFHYENYHEETCLV 81 (319) T ss_dssp CHHHHTCEEEEEEEEECCCSBCSSSCSBSSCCCSCCSEEEEEECCCC----------CTTTTGGGGEEEEEECTTTCCHH T ss_pred CHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 84661772777997895799778889988667789985303355677654433349999876522333223567766510 Q ss_pred ---------CCHHHHHHHHHHHHHHCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE Q ss_conf ---------78999999999877829762442013113212376788820144544201533899970677777410379 Q gi|254780979|r 70 ---------LNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIE 140 (500) Q Consensus 70 ---------lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~ 140 (500) +|++|+++|+++|+||||+|++.++|||||||||||||||||||+ |+.+|++++. .++ T Consensus 82 ~~~~~~~~plN~~av~~ai~~~~aln~~i~~~~~f~RK~y~y~dlpkgyQitq~---i~~~G~i~~~----------~~~ 148 (319) T d2d6fc3 82 EADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQVIDGSNTGGFQRTGL---VATDGHLETP----------QGT 148 (319) T ss_dssp HHTSSCCCCCCHHHHHHHHHHHHHTTCEECSEECCEEEECTTSSSSSSEEEEEE---EEEEEEEEET----------TEE T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCC---EECCCCCCCC----------CCC T ss_conf 368888766488999998777775195745235422234345776665323551---2232662244----------660 Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC Q ss_conf 84236665202310011567871488661578612576303652778999999999999986420456764322011257 Q gi|254780979|r 141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADV 220 (500) Q Consensus 141 v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~Dv 220 (500) |+|+||||||||||++|+. ++.+++||||||+|||||||+|||+||+||++|+++|+++|||+|+|+|+ ||||||| T Consensus 149 I~I~rihLEEDagK~~h~~-~~~~~vD~NRaGvPLiEIVTePd~~s~~ea~~~~~~l~~il~~lgv~~~~---Gs~R~Dv 224 (319) T d2d6fc3 149 VKIENLCLEEDAARRIRET-GDGVVFRLDRLGIPLVEITTDPSMSDPQQLREVAYQIGQILRSTRVKRGL---GTIRQDL 224 (319) T ss_dssp EEEEEEEEEECCCEEEEEE-TTEEEEETTSTTCEEEEEECCSCCCCHHHHHHHHHHHHHHHTTSSCCCSS---TTCEEEE T ss_pred EEEEEEEEECCCCCCCCCC-CCCEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCC T ss_conf 5677899860432113567-88447513446850589986145378899999999998886522202565---4322444 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCEEEEEECCCCCCCCCCC Q ss_conf 543213766678862223540246599999999999999731398003----4432337554336653035667777833 Q gi|254780979|r 221 NVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIR----QETRLFDPSKNETRSLRTKEDALDYRYF 296 (500) Q Consensus 221 NVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll~~G~~v~----qETR~~d~~~~~T~~mR~KE~a~DYRyf 296 (500) |||||+ |||||||||||||+|++||+||+.||+++++.|+.+. ||||+||++ +.|..||+||+ ||||| T Consensus 225 NVSvr~-----GtRvEIKNlNSfr~i~~AI~yEi~RQ~~lle~g~~i~~~~~qetr~~~~~-~~t~~~R~ke~--dyRYf 296 (319) T d2d6fc3 225 NISIRD-----GARVEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQERGPEETRKALPD-GNTQYLRPLPT--SSRMY 296 (319) T ss_dssp EEECTT-----SCCEEEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSS-SCEEEEEECCC--CCCEE T ss_pred CCCCCC-----CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCEEEECCCCC--CCCCC T ss_conf 411146-----62576036650578888888999999999985996333775420037788-98976113664--44668 Q ss_pred CCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 27787731269999999885302 Q gi|254780979|r 297 SEPDLLPLEIDEDFIRAIKKQIP 319 (500) Q Consensus 297 PEPDLPpi~is~e~i~~i~~~lP 319 (500) |||||||+.|+++||+.++++|| T Consensus 297 PEPDLppi~i~~~~Ie~ir~~lP 319 (319) T d2d6fc3 297 LETDIPLFRIEDDLLEGIRRNLP 319 (319) T ss_dssp ECTTSCCEECCHHHHHHHHTTCC T ss_pred CCCCCCCEECCHHHHHHHHHHCC T ss_conf 88997887679999999997594 No 3 >d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]} Probab=100.00 E-value=0 Score=813.26 Aligned_cols=277 Identities=29% Similarity=0.406 Sum_probs=254.9 Q ss_pred CCCCCCEE---EEEEEEEEECCCCCCCCCCCCCCCCCCCC----------------------------------CCCHHH Q ss_conf 54780338---98999788868986555884246898765----------------------------------206130 Q gi|254780979|r 18 TTGDWEVV---IGIEVHAQLSVVSKLFSGASVNFGAEPNT----------------------------------QVSFFD 60 (500) Q Consensus 18 ~~~~~e~v---IGLEiH~qL~t~tKlFc~c~~~~~~~pNt----------------------------------~v~~~~ 60 (500) ++-||+.+ |||||||||+|+ ||||+|+++|+++||. |+|++| T Consensus 2 ~~~~y~~v~lkIGLEiHvQL~Tk-KlFc~cp~~~~~~~n~~~~~~~~p~~~~lg~~~pgal~~~nk~~~~~~~~n~~~~~ 80 (321) T d1zq1c3 2 DKFNYEELGLKVGLEIHRQLDTK-KLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKKGRVYVYEGNYELTD 80 (321) T ss_dssp CSSCTTTTTCCBEEEEEEEBSSB-CTTSSCBCCCCSCCCEEEEECCCCCEETTSCBCHHHHHHHHTTCEEEEEECTTTCB T ss_pred CCCCHHHHCCEEEEEEEEEECCC-EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCC T ss_conf 75697996967878999987675-00689986456776533355556642334556855545554143200025777301 Q ss_pred CCCCCCCCC--CCHHHHHHHHHHHHHHCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE Q ss_conf 268988873--789999999998778297624420131132123767888201445442015338999706777774103 Q gi|254780979|r 61 AAMPGMLPI--LNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRT 138 (500) Q Consensus 61 ~g~PG~lP~--lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~ 138 (500) +++||++|+ +|++||++|+++|+||||+|++.+.|||||||||||||||||||+ |+.+|++++.. T Consensus 81 l~~~g~~p~~~pN~~Av~~ai~~~lalnc~i~~~~~f~RK~yfy~d~pkgyQitq~---i~~~G~~~~~~---------- 147 (321) T d1zq1c3 81 LVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNVSGFQRTAI---IATDGKVETPW---------- 147 (321) T ss_dssp GGGTTSSCCCCCCHHHHHHHHHHHHHTTCEECSEECCEEEECSSSSSTTSEEEECE---EEEEEEECCTT---------- T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHCCEEHHHCCCCCCEEECCCCCCCCCCCCC---CCCEEEEEEEE---------- T ss_conf 10579878766278899999999998598850220233530565876444447633---45503665430---------- Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC Q ss_conf 79842366652023100115678714886615786125763036527789999999999999864204567643220112 Q gi|254780979|r 139 IEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRA 218 (500) Q Consensus 139 ~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~ 218 (500) ++|+|+||||||||||++|+. +..+++||||||+|||||||+|||+||+||++|+++|+++|||+|+|+ |++||||| T Consensus 148 ~~i~I~rihLEEDagK~~h~~-~~~~lvD~NRaGvPLiEIVTePd~~s~~eA~~~~~~L~~il~~~~~~~--~~~GslR~ 224 (321) T d1zq1c3 148 GAVGIPTICLEEDAARIIERK-DKEVIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVK--RGLGTIRQ 224 (321) T ss_dssp CCEEEEEEEEEECCCEEEEEE-TTEEEEESTTTTCEEEEEECCTTBCSHHHHHHHHHHHHHHHHHTSCBC--CSSTTEEE T ss_pred CCCCCEEEEEEECCHHHCCCC-CCCEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEC T ss_conf 235632689860100001145-873278512367514787515664568999999999998756544004--45653644 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCEEEEEECCCCCCCCC Q ss_conf 57543213766678862223540246599999999999999731398003----44323375543366530356677778 Q gi|254780979|r 219 DVNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIR----QETRLFDPSKNETRSLRTKEDALDYR 294 (500) Q Consensus 219 DvNVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll~~G~~v~----qETR~~d~~~~~T~~mR~KE~a~DYR 294 (500) ||||||+ +|||||||||||||+|++||+||+.||+++|+.|+++. ||||+||+. +.|.+||+||+ ||| T Consensus 225 DvNVSv~-----~g~RvEIKNlnS~r~i~~AI~~Ei~RQ~~~l~~g~~~~~~~~qeTr~~~~~-~~T~~~R~ke~--dyR 296 (321) T d1zq1c3 225 DLNVSIK-----GGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGPEETRRALPD-GNTEYMRPLPG--KAR 296 (321) T ss_dssp EEEECCT-----TSCCEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECTT-SCEEEEECCCC--CCC T ss_pred CCCCCCC-----CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCC-CCEEEEECCCC--CCC T ss_conf 5431224-----333566503441577888889999999999974784125665411438799-98986305787--604 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 3327787731269999999885302 Q gi|254780979|r 295 YFSEPDLLPLEIDEDFIRAIKKQIP 319 (500) Q Consensus 295 yfPEPDLPpi~is~e~i~~i~~~lP 319 (500) |||||||||+.|+++||+.|+++|| T Consensus 297 YfPePDLppi~i~~~~i~~ik~~lP 321 (321) T d1zq1c3 297 MYPETDIPPLRIPDDLKKKIKENLP 321 (321) T ss_dssp EEECTTSCCEECCHHHHHHHHTSCC T ss_pred CCCCCCCCCEECCHHHHHHHHHHCC T ss_conf 3789997887769999999997494 No 4 >d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Probab=99.87 E-value=2.9e-22 Score=181.05 Aligned_cols=106 Identities=39% Similarity=0.709 Sum_probs=101.7 Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 48368988643202688999888764113678988640-24302457777654578876433874000648989999999 Q gi|254780979|r 320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLA-VNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELI 398 (500) Q Consensus 320 elP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~-~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi 398 (500) |||+++++||+++|||++++|.+|++++.+++|||+++ ...+||.+|||+++|+.++||+.+.++.+++++|++|++|+ T Consensus 1 ELP~~k~~R~~~~ygL~~~da~~L~~~~~l~~~FE~~~~~~~~~k~~aNwl~~el~~~ln~~~~~i~~~~i~~~~la~Li 80 (107) T d2f2ab1 1 ELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMI 80 (107) T ss_dssp CCHHHHHHHHHHTTCCCHHHHHHHTSSHHHHHHHHHHHTTTCCHHHHHHHHHTHHHHHHHTTTCCTTTSSCCHHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH T ss_conf 98699999999983959999999980399999999999854788999999999899998753785216986999999999 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCH Q ss_conf 888638731478999999998179998 Q gi|254780979|r 399 DLIIDGTISGKIAKDIFNILWEKGGTP 425 (500) Q Consensus 399 ~li~~g~Is~~~aK~il~~l~~~~~~p 425 (500) .|+++|+||+++||+||++|+++|+|. T Consensus 81 ~lv~~g~Is~~~aK~vl~~~~~~g~dA 107 (107) T d2f2ab1 81 KLIEDGTMSSKIAKKVFPELAAKGGNA 107 (107) T ss_dssp HHHTTSSSCHHHHHHHHHHHHHTCSCS T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCC T ss_conf 999759755789999999999708999 No 5 >d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Pyrococcus abyssi [TaxId: 29292]} Probab=99.02 E-value=1.1e-10 Score=95.77 Aligned_cols=55 Identities=31% Similarity=0.472 Sum_probs=49.7 Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHH Q ss_conf 483689886432026889998887641136789886-40243024577776545788 Q gi|254780979|r 320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEK-LAVNRDKKIVANWVINDLLG 375 (500) Q Consensus 320 elP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~-v~~~~~pk~~Anwi~~el~~ 375 (500) |||+++++||+++|||+++||.+|++++.++ |||+ +..+.+||.+||||+++|.| T Consensus 1 ELP~~k~~Ry~~eygLs~~dA~~l~~~~~~~-~Fee~v~~~~~pklaAnwl~~~l~g 56 (56) T d1zq1c1 1 ELPQAKVERYVKEYKLDRSLAQTLVDDERDE-LFEELVSMGVKPSLAASILVVVLKG 56 (56) T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHTSTHH-HHHHHHHTTCSTTHHHHHHHHTTCC T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCHHHH-HHHHHHHCCCCHHHHHHHHHHHHCC T ss_conf 9879999999998397999999998775799-9999998099899989999998339 No 6 >d2d6fc1 a.182.1.2 (C:445-503) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=98.97 E-value=1.3e-10 Score=95.14 Aligned_cols=56 Identities=32% Similarity=0.475 Sum_probs=50.7 Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHH Q ss_conf 483689886432026889998887641136789886-402430245777765457887 Q gi|254780979|r 320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEK-LAVNRDKKIVANWVINDLLGV 376 (500) Q Consensus 320 elP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~-v~~~~~pk~~Anwi~~el~~~ 376 (500) |||+++++||+++||||.+||.+|++++.+ +|||+ +..+.+||.+||||+++|.++ T Consensus 1 ELP~~k~~R~~~eygLs~~dA~~L~~~~~~-~~FEe~v~~~~~pk~~Anwi~~~l~~L 57 (59) T d2d6fc1 1 ELPSEKKERIMRDYGLSEDLASQLVKRNLV-DEFEALTEFRVDTTVIASLLAYTLREL 57 (59) T ss_dssp CCHHHHHHHHHHTTCCCHHHHHHHHHTTCT-TTC--------CCHHHHHTTTTHHHHH T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCCHH-HHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 987999999999809499999999827469-999999980899999999999999986 No 7 >d1ng6a_ a.182.1.1 (A:) Hypothetical protein YqeY {Bacillus subtilis [TaxId: 1423]} Probab=97.92 E-value=2.7e-05 Score=56.08 Aligned_cols=96 Identities=17% Similarity=0.260 Sum_probs=67.6 Q ss_pred CCCHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHCCC--------CHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHH Q ss_conf 489899999998-886387314789999999981799--------98899996398761898899999999998399989 Q gi|254780979|r 388 PISPNQLGELID-LIIDGTISGKIAKDIFNILWEKGG--------TPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNV 458 (500) Q Consensus 388 ~i~p~~laeLi~-li~~g~Is~~~aK~il~~l~~~~~--------~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V 458 (500) .++-+.+-.++. ++.+ .++-++.+-..+. .--+++++.-..+.| +++++.+|+++|+++.. T Consensus 44 ~~~d~~v~~vi~k~vKq-------r~es~e~y~~~~r~dl~e~e~~Ei~il~~yLP~~ls-eeEl~~~v~~~i~e~~a-- 113 (148) T d1ng6a_ 44 SLTEDEELTVLSRELKQ-------RKDSLQEFSNANRLDLVDKVQKELDILEVYLPEQLS-EEELRTIVNETIAEVGA-- 113 (148) T ss_dssp CCCHHHHHHHHHHHHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHGGGSCCCCC-HHHHHHHHHHHHHHTTC-- T ss_pred CCCHHHHHHHHHHHHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHCC-- T ss_conf 99989999999999998-------898999988436288999999888999997124688-77899999999998299-- Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC Q ss_conf 975272132265899999972897788999999999707 Q gi|254780979|r 459 ARIATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKLG 497 (500) Q Consensus 459 ~~~kgk~ka~gfLvGqVMK~tkGkAdpk~v~~lL~e~L~ 497 (500) ..++-+|..||.+|+..+|+||++.|+++++++|. T Consensus 114 ----~~~kdmG~vM~~l~~~~~g~~Dg~~vs~~vk~~Ls 148 (148) T d1ng6a_ 114 ----SSKADMGKVMGAIMPKVKGKADGSLINKLVSSQLS 148 (148) T ss_dssp ----CSGGGHHHHHHHHHHHHTTTSCHHHHHHHHHHHCC T ss_pred ----CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC T ss_conf ----75100889999999882798889999999998709 No 8 >d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]} Probab=91.67 E-value=0.00074 Score=45.50 Aligned_cols=44 Identities=20% Similarity=0.136 Sum_probs=28.8 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECCCEECCC---CCCCCCCC Q ss_conf 98887378999999999877829762442013113212376---78882014 Q gi|254780979|r 64 PGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPD---LPQGYQIS 112 (500) Q Consensus 64 PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpD---lpkgyQiT 112 (500) ||+||++|+.++ .....||.+.....||+++||||+ ...++++. T Consensus 58 pgal~~~nk~~~-----~~~~~n~~~~~l~~~g~~p~~~pN~~Av~~ai~~~ 104 (321) T d1zq1c3 58 PAALEEFKKGRV-----YVYEGNYELTDLVYMDEEPPRGPDREALEVALQIA 104 (321) T ss_dssp HHHHHHHHTTCE-----EEEEECTTTCBGGGTTSSCCCCCCHHHHHHHHHHH T ss_pred HHHHHHHHHCCC-----CEECCCCCCCCEECCCCCCCCCCCHHHHHHHHHHH T ss_conf 555455541432-----00025777301105798787662788999999999 No 9 >d1tola2 d.212.1.1 (A:125-216) TolA {Escherichia coli [TaxId: 562]} Probab=55.06 E-value=4.6 Score=17.58 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=40.6 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 789999999999999864204567643220112575432137666788622235402465999999999 Q gi|254780979|r 186 SSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEA 254 (500) Q Consensus 186 s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi 254 (500) |..|+-.|...|+..++..=.-...+ .| +.|.|.|.+.+.|.-.+ ++..+.-....+++.-=+ T Consensus 1 s~~ev~~Y~~~I~~~I~~~w~~p~~~-~g-~~~~v~i~l~~~G~v~~----v~~sSG~~~fd~sa~~Ai 63 (92) T d1tola2 1 SGADINNYAGQIKSAIESKFYDASSY-AG-KTCTLRIKLAPDGMLLD----IKPEGGDPALCQAALAAA 63 (92) T ss_dssp CCHHHHHHHHHHHHHHHTTCTTGGGG-TT-CCEEEEEEECTTSCEEE----EEEEEECHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCC-CC-CEEEEEEEEECCCCEEE----EEECCCCHHHHHHHHHHH T ss_conf 97799999999999999754899656-89-99999999967843898----674599799999999999 No 10 >d1ltza_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Chromobacterium violaceum [TaxId: 536]} Probab=54.66 E-value=3.2 Score=18.76 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=35.6 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 336653035667777833277877312699999998853024836898864320268 Q gi|254780979|r 279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI 335 (500) Q Consensus 279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL 335 (500) -.|..+|+.+.-. |-||||+ +-++---+|.|-+.....|...||. T Consensus 111 p~t~~IR~~~~~d---YtpEPDi---------fHd~~GHvPlL~np~fAdf~q~~G~ 155 (277) T d1ltza_ 111 PVTWWLREPHQLD---YLQEPDV---------FHDLFGHVPLLINPVFADYLEAYGK 155 (277) T ss_dssp EEECSCCCTTCSS---SCCSCCH---------HHHHHHTGGGGGSHHHHHHHHHHHH T ss_pred EEEEECCCCCCCC---CCCCHHH---------HHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 1000015744345---5544007---------8898657864268899999999999 No 11 >d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Probab=51.15 E-value=3.6 Score=18.35 Aligned_cols=64 Identities=17% Similarity=0.048 Sum_probs=34.4 Q ss_pred EEEEEC--CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHH-HHCCEECCCCEEECCCEECCCCC Q ss_conf 978886--898655588424689876520613026898887378999999999877-82976244201311321237678 Q gi|254780979|r 30 VHAQLS--VVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGL-GLNAHINKYSVFARKNYFYPDLP 106 (500) Q Consensus 30 iH~qL~--t~tKlFc~c~~~~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~-al~~~i~~~~~fdRK~YfYpDlp 106 (500) |++||- ++.+-.|++++..-..-+.+ .+.|-+.+-.+|. |..-.|. ...|||.-|.|.--- T Consensus 13 iyaQiIDd~~~~tl~s~St~~k~~k~~~---------------~~~A~~vG~~la~~ak~~gI~-~v~FDR~g~~YHGrv 76 (86) T d2j01s1 13 IYAQIIDDEKGVTLVSASSLALKLKGNK---------------TEVARQVGRALAEKALALGIK-QVAFDRGPYKYHGRV 76 (86) T ss_dssp BCEEEEETTTTEEEEEECSTTTCCCSCH---------------HHHHHHHHHHHHHHHHHTSCC-CCBCCCSTTCSSSSC T ss_pred EEEEEEECCCCEEEEEEECCCHHHCCCC---------------HHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCHH T ss_conf 8999997679869999821311104877---------------899999999999999987998-899948997220299 Q ss_pred CCC Q ss_conf 882 Q gi|254780979|r 107 QGY 109 (500) Q Consensus 107 kgy 109 (500) |.| T Consensus 77 ka~ 79 (86) T d2j01s1 77 KAL 79 (86) T ss_dssp CCC T ss_pred HHH T ss_conf 999 No 12 >d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA {Escherichia coli [TaxId: 562]} Probab=50.48 E-value=6.6 Score=16.42 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=13.8 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHH Q ss_conf 2576303652778999999999999986 Q gi|254780979|r 175 LMEIVTKPDMRSSLEAKAFLTKLRSILR 202 (500) Q Consensus 175 LiEIVT~Pd~~s~~ea~~~~~~l~~ilr 202 (500) |+|+||- ...|++++..|+..|+..+. T Consensus 65 ~lE~iTp-~~~~~~~~l~~L~~lh~~~~ 91 (518) T d2d32a1 65 LLEFITP-VDGDIEHMLTFMRDLHRYTA 91 (518) T ss_dssp EEEEECC-CBSCHHHHHHHHHHHHHHHH T ss_pred HHHHCCC-CCCCHHHHHHHHHHHHHHHH T ss_conf 7661789-99999999999999999999 No 13 >d1mlwa_ d.178.1.1 (A:) Tryptophan hydroxylase {Human (Homo sapiens) [TaxId: 9606]} Probab=39.33 E-value=4.2 Score=17.89 Aligned_cols=45 Identities=27% Similarity=0.493 Sum_probs=34.6 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 336653035667777833277877312699999998853024836898864320268 Q gi|254780979|r 279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI 335 (500) Q Consensus 279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL 335 (500) -.|..+|+.+.-. |-||||+ +-++---+|.|-+.....|..++|+ T Consensus 148 p~t~~IR~~~~~~---YtpEPDi---------~HEl~GHvPlLadp~fA~f~q~~G~ 192 (290) T d1mlwa_ 148 HCTQYVRHSSDPF---YTPEPDT---------CHELLGHVPLLAEPSFAQFSQEIGL 192 (290) T ss_dssp EECCCCCCTTCTT---CCSSCCH---------HHHHHHTHHHHTSHHHHHHHHHHHH T ss_pred EEEEEECCCCCCC---CCCCHHH---------HHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 1012554777776---5644459---------9998576601289899999999989 No 14 >d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Escherichia coli, phenylalanine-regulated isozyme [TaxId: 562]} Probab=39.15 E-value=9.6 Score=15.21 Aligned_cols=79 Identities=22% Similarity=0.213 Sum_probs=40.3 Q ss_pred CEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC------CHHHHH Q ss_conf 1257630365-277899999999999998642045676432201125754321376667886222354------024659 Q gi|254780979|r 174 ALMEIVTKPD-MRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNV------NSIRFL 246 (500) Q Consensus 174 PLiEIVT~Pd-~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~~~~GtRvEIKNl------nS~~~i 246 (500) +|+ +|+.|| +|+|+.|.+|++.|..+-.-. +|.- .-.||+=. ++-.|.|--|++ +.--.| T Consensus 46 RlL-VVvGPCSIHD~~aa~eYA~rL~~l~~~~--~d~l--~iVMRvYf--------EKPRTtvGWKGli~DP~ldgs~~I 112 (343) T d1n8fa_ 46 RLL-VVIGPCSIHDPVAAKEYATRLLALREEL--KDEL--EIVMRVYF--------EKPRTTVGWKGLINDPHMDNSFQI 112 (343) T ss_dssp CEE-EEEECSSCCCHHHHHHHHHHHHHHHHHT--TTTE--EEEEECCC--------CCCCSSSSCCCTTTCTTSSSCCCH T ss_pred CEE-EEECCCCCCCHHHHHHHHHHHHHHHHHH--CCCE--EEEEEECC--------CCCCCCCCCCHHCCCCCCCCCCCH T ss_conf 769-9976886799899999999999999864--3553--99652211--------487766784021267566788672 Q ss_pred HHHHHHHHHHHHHHHHCCC Q ss_conf 9999999999999731398 Q gi|254780979|r 247 GLAIEYEARRQIAILEDGG 265 (500) Q Consensus 247 ~~AI~yEi~RQ~~ll~~G~ 265 (500) .+-+..-..=..++.+.|- T Consensus 113 ~~Gl~~aR~ll~~i~~~gl 131 (343) T d1n8fa_ 113 NDGLRIARKLLLDINDSGL 131 (343) T ss_dssp HHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHCCC T ss_conf 0139999999999997499 No 15 >g1qqp.1 b.121.4.1 (4:,2:) Aphthovirus (Foot-and-mouth disease virus) coat proteins {FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]} Probab=39.12 E-value=6.9 Score=16.26 Aligned_cols=23 Identities=4% Similarity=-0.058 Sum_probs=11.8 Q ss_pred HHHHHHHCCCCCCCCCCEEECCCCCC Q ss_conf 99986420456764322011257543 Q gi|254780979|r 198 RSILRYLGTCDGNMEEGSMRADVNVS 223 (500) Q Consensus 198 ~~ilr~~gisd~~meeGslR~DvNVS 223 (500) ++.++|---.+|+| .+|+-+|-| T Consensus 163 ~~~~~~h~~~r~g~---~v~Vqvnas 185 (289) T g1qqp.1 163 GSLTDSYAYMRNGW---DVEVTAVGN 185 (289) T ss_dssp HHHHHHEEEEEEEE---EEEEEECCC T ss_pred HHHHHHHHHHCCCE---EEEEEEECC T ss_conf 99988664011878---999999688 No 16 >d1j8ua_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Human (Homo sapiens) [TaxId: 9606]} Probab=37.61 E-value=4.6 Score=17.57 Aligned_cols=45 Identities=24% Similarity=0.458 Sum_probs=34.6 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 336653035667777833277877312699999998853024836898864320268 Q gi|254780979|r 279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI 335 (500) Q Consensus 279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL 335 (500) -.|..+|+.+.- -|-||||+ +-++---+|.|-+.....|..++|+ T Consensus 147 p~TqyIR~~~~~---~YtpEPDi---------~HEl~GHvPlLadp~fA~f~q~iG~ 191 (307) T d1j8ua_ 147 HCTQYIRHGSKP---MYTPEPDI---------CHELLGHVPLFSDRSFAQFSQEIGL 191 (307) T ss_dssp EECCCCCCTTCT---TCCSSCCH---------HHHHHHTHHHHTSHHHHHHHHHHHH T ss_pred EECEEECCCCCC---CCCCCHHH---------HHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 201021576667---65642668---------9998677611188899999999999 No 17 >d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=36.25 E-value=5 Score=17.31 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=33.7 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 336653035667777833277877312699999998853024836898864320268 Q gi|254780979|r 279 NETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI 335 (500) Q Consensus 279 ~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGL 335 (500) -.|..+|+.+.- -|-||||+ +-++---+|.|-+.....|..++|+ T Consensus 148 p~TqyIR~~~~~---~YtpEPDi---------~HEl~GHvPlLadp~fA~f~q~~G~ 192 (336) T d1toha_ 148 QCTQYIRHASSP---MHSPEPDC---------CHELLGHVPMLADRTFAQFSQDIGL 192 (336) T ss_dssp EECCCCCCTTCT---TCCSSCCH---------HHHHHHTHHHHTSHHHHHHHHHHHH T ss_pred CEEEEECCCCCC---CCCCCHHH---------HHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 135432366666---65642459---------9998575620189899999999999 No 18 >g1tme.1 b.121.4.1 (4:,2:) Theilovirus capsid proteins {Theiler's murine encephalomyelitis virus, strain da [TaxId: 12124]} Probab=30.71 E-value=9.4 Score=15.27 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=19.0 Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCC Q ss_conf 0338989997888689865558842 Q gi|254780979|r 22 WEVVIGIEVHAQLSVVSKLFSGASV 46 (500) Q Consensus 22 ~e~vIGLEiH~qL~t~tKlFc~c~~ 46 (500) |=.-.|.+||||.|+ ||--++|-- T Consensus 118 ~l~R~G~~VhVQcNa-SkFHqG~Ll 141 (280) T g1tme.1 118 YLCKTGWRVQVQCNA-SQFHAGSLL 141 (280) T ss_dssp EEEEEEEEEEEECCC-CTTCEEEEE T ss_pred HHHHCCEEEEEEECC-CHHHHHEEE T ss_conf 756088299999679-855300586 No 19 >d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId: 562]} Probab=30.57 E-value=13 Score=14.25 Aligned_cols=13 Identities=8% Similarity=0.163 Sum_probs=6.8 Q ss_pred HCCCCHHHHHHHH Q ss_conf 0268899988876 Q gi|254780979|r 332 EFGISLYDASVLV 344 (500) Q Consensus 332 ~yGLs~~dA~~L~ 344 (500) .|+||+.+|+.++ T Consensus 85 ~~~LSe~QA~AIL 97 (132) T d1x75a1 85 LYYLTEQQAQAIL 97 (132) T ss_dssp EEECCHHHHHHHH T ss_pred CCCCCHHHHHHHH T ss_conf 5127899999999 No 20 >g1bev.1 b.121.4.1 (4:,2:) Bovine enterovirus coat proteins {Bovine enterovirus, VG-5-27 [TaxId: 12064]} Probab=30.28 E-value=8.9 Score=15.45 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.4 Q ss_pred EEEEEEEEEECCCCCCCCCCCC Q ss_conf 8989997888689865558842 Q gi|254780979|r 25 VIGIEVHAQLSVVSKLFSGASV 46 (500) Q Consensus 25 vIGLEiH~qL~t~tKlFc~c~~ 46 (500) -.|.+||||.|. ||-.++|-- T Consensus 139 R~G~~v~VQ~NA-SkFH~G~Ll 159 (284) T g1bev.1 139 RGGWAVHVQCNA-TKFHQGTLL 159 (284) T ss_dssp EEEEEEEEECCC-CTTEEEEEE T ss_pred ECCEEEEEEEEC-CCCCCCEEE T ss_conf 577699999979-846500699 No 21 >d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Probab=28.90 E-value=14 Score=14.06 Aligned_cols=41 Identities=24% Similarity=0.166 Sum_probs=22.3 Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 89899999998886387314789999999981799988999 Q gi|254780979|r 389 ISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIV 429 (500) Q Consensus 389 i~p~~laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~ii 429 (500) ++.+....++..+-+|+++..+.-..|-.+...|.++++++ T Consensus 17 Ls~~E~~~~~~~i~~g~~~d~qi~afL~al~~kGet~~Ei~ 57 (70) T d2tpta1 17 LSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERV 57 (70) T ss_dssp CCHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHCCCHHHHH T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 69999999999998488459999999999998599999999 No 22 >g1ncq.1 b.121.4.1 (D:,B:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14) [TaxId: 12131]} Probab=28.71 E-value=12 Score=14.52 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=18.8 Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCC Q ss_conf 0338989997888689865558842 Q gi|254780979|r 22 WEVVIGIEVHAQLSVVSKLFSGASV 46 (500) Q Consensus 22 ~e~vIGLEiH~qL~t~tKlFc~c~~ 46 (500) |=.-.|-+||||.|+ ||--++|-- T Consensus 133 ~l~R~G~~V~VQcNa-SkFHqG~Ll 156 (295) T g1ncq.1 133 SLGRSGYTVHVQCNA-TKFHSGCLL 156 (295) T ss_dssp EEEEEEEEEEEECCC-CTTCEEEEE T ss_pred HHHCCCEEEEEEECC-CHHCCCEEE T ss_conf 645087199999778-810010588 No 23 >g2mev.1 b.121.4.1 (4:,2:) Mengo encephalomyocarditis virus coat proteins {Mengovirus [TaxId: 12107]} Probab=27.79 E-value=11 Score=14.67 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=15.4 Q ss_pred EEEEEEEEEEECCCCCCCCCCC Q ss_conf 3898999788868986555884 Q gi|254780979|r 24 VVIGIEVHAQLSVVSKLFSGAS 45 (500) Q Consensus 24 ~vIGLEiH~qL~t~tKlFc~c~ 45 (500) .-.|.+||||-|+ +|--++|- T Consensus 157 ~R~G~~VhVQcNa-SkFHqG~L 177 (307) T g2mev.1 157 VKTGWRVQVQCNA-SQFHAGSL 177 (307) T ss_dssp EEEEEEEEEECCC-CTTCEEEE T ss_pred HHCCCEEEEEECC-CCCCCCEE T ss_conf 6188189999759-80000079 No 24 >d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Probab=27.68 E-value=14 Score=13.91 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=26.3 Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 89899999998886387314789999999981799988999 Q gi|254780979|r 389 ISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIV 429 (500) Q Consensus 389 i~p~~laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~ii 429 (500) ++.+....++.-+-+|++|..+.-..|-.+...|.++++++ T Consensus 16 Ls~~E~~~~~~~i~~g~~s~~qi~afL~al~~kG~t~~Ei~ 56 (70) T d1brwa1 16 LTKEEIEWIVRGYTNGDIPDYQMSALAMAIYFRGMTEEETA 56 (70) T ss_dssp CCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH T ss_conf 79999999999998599999999999999988599999999 No 25 >d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]} Probab=27.37 E-value=14 Score=14.06 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=20.8 Q ss_pred CCCC-CCHHHHHHHHHHHHHHCCEECCC Q ss_conf 8873-78999999999877829762442 Q gi|254780979|r 66 MLPI-LNGRCVQQAVMTGLGLNAHINKY 92 (500) Q Consensus 66 ~lP~-lN~~av~~ai~~~~al~~~i~~~ 92 (500) |||| .+++|.+.|.+++.-++-+-+.. T Consensus 7 TLPVp~g~~A~eAAk~la~kMGl~~p~V 34 (52) T d1xrsb2 7 TLPLKNNERSAEAAKQIALKMGLEEPSV 34 (52) T ss_dssp EESSCSSHHHHHHHHHHHHTTSSCCCEE T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCHHE T ss_conf 8407998478999999999828996023 No 26 >d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=26.32 E-value=15 Score=13.74 Aligned_cols=42 Identities=31% Similarity=0.413 Sum_probs=26.1 Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 489899999998886387314789999999981799988999 Q gi|254780979|r 388 PISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIV 429 (500) Q Consensus 388 ~i~p~~laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~ii 429 (500) .++.+....++..+-+|.++....-..|-.+...|.++++++ T Consensus 15 ~Ls~~e~~~~~~~i~~g~~s~~qiaafL~al~~kGet~~Ei~ 56 (70) T d1o17a1 15 DLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIV 56 (70) T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH T ss_conf 979999999999998699999999999999998199999999 No 27 >d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} Probab=24.41 E-value=16 Score=13.50 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=23.0 Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 89899999998886387314789999999981799988999 Q gi|254780979|r 389 ISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIV 429 (500) Q Consensus 389 i~p~~laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~ii 429 (500) ++.+...+++..+-+|.++....-..|-.+...|.++++++ T Consensus 15 Ls~ee~~~~~~~i~~g~~~d~qiaafL~al~~kg~t~dEi~ 55 (69) T d1khda1 15 MTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIA 55 (69) T ss_dssp CCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHCCCHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHH T ss_conf 79999999999998699999999999999998199999999 No 28 >d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]} Probab=24.33 E-value=16 Score=13.49 Aligned_cols=29 Identities=10% Similarity=0.299 Sum_probs=20.9 Q ss_pred CEEEEEECCC-CCCHHHHHHHHHHHHHHHHH Q ss_conf 1257630365-27789999999999999864 Q gi|254780979|r 174 ALMEIVTKPD-MRSSLEAKAFLTKLRSILRY 203 (500) Q Consensus 174 PLiEIVT~Pd-~~s~~ea~~~~~~l~~ilr~ 203 (500) .|+ +|..|| +|+++.|.+|++.|..+-.- T Consensus 46 RlL-VIvGPCSIHD~~aa~eYA~rL~~l~~~ 75 (346) T d1of8a_ 46 RVL-VIVGPCSIHDLEAAQEYALRLKKLSDE 75 (346) T ss_dssp SEE-EEEECSCCCCHHHHHHHHHHHHHHHHH T ss_pred CEE-EEECCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 769-997688679999999999999998886 No 29 >d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Probab=23.35 E-value=17 Score=13.36 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=27.2 Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 489899999998886387314789999999981799988999 Q gi|254780979|r 388 PISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIV 429 (500) Q Consensus 388 ~i~p~~laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~ii 429 (500) .++.+.+..++.-+-+|+++....-..|-.+...|.++++++ T Consensus 16 ~Ls~~E~~~~~~~i~~g~~s~~qi~afL~al~~kG~t~~Ei~ 57 (68) T d1uoua1 16 RLSEADIRGFVAAVVNGSAQGAQIGAMLMAIRLRGMDLEETS 57 (68) T ss_dssp CCCHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHCCCHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH T ss_conf 999999999999998499889999999999998299999999 No 30 >d1jkea_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Escherichia coli [TaxId: 562]} Probab=22.02 E-value=18 Score=13.17 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=35.6 Q ss_pred ECCCCCC---HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC Q ss_conf 0365277---899999999999998642045676432201125754321376 Q gi|254780979|r 180 TKPDMRS---SLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG 228 (500) Q Consensus 180 T~Pd~~s---~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~ 228 (500) +.|+++. |++|+..-.++-..++..+. .-+.|.+-+|-+||+-.+| T Consensus 89 ~rPsF~~Aa~p~~A~~ly~~f~~~l~~~~~---~v~~G~FGA~M~V~l~NDG 137 (145) T d1jkea_ 89 MRPSFSKGASPDRAEALYDYFVERCRQQEM---NTQTGRFAADMQVSLVNDG 137 (145) T ss_dssp SSCBCSSBCCHHHHHHHHHHHHHHHHHTTC---CEEECCTTSCEEEEEEEEE T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHCCC---CCEECCCCCCCEEEEEECC T ss_conf 772040469978999999999999986699---8556888988489999869 No 31 >d1vcca_ d.121.1.1 (A:) Vaccinia DNA topoisomerase I, 9 kDa N-terminal fragment {Vaccinia virus, strain WR [TaxId: 10245]} Probab=21.94 E-value=12 Score=14.58 Aligned_cols=11 Identities=36% Similarity=0.896 Sum_probs=6.9 Q ss_pred EECCCEECCCC Q ss_conf 31132123767 Q gi|254780979|r 95 FARKNYFYPDL 105 (500) Q Consensus 95 fdRK~YfYpDl 105 (500) =-||+|||+-+ T Consensus 65 KgrkQYfYGk~ 75 (77) T d1vcca_ 65 KGRRQYFYGKM 75 (77) T ss_dssp TSCEEEEECTT T ss_pred CCCEEEEEECC T ss_conf 88357877213 No 32 >g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human coxsackievirus A9 [TaxId: 12067]} Probab=21.53 E-value=18 Score=13.27 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=17.1 Q ss_pred CEEEEEEEEEEECCCCCCCCCCCC Q ss_conf 338989997888689865558842 Q gi|254780979|r 23 EVVIGIEVHAQLSVVSKLFSGASV 46 (500) Q Consensus 23 e~vIGLEiH~qL~t~tKlFc~c~~ 46 (500) -.-.|-+||||-|+ ||--++|-- T Consensus 160 l~R~G~~VhVQcNa-SkFHqG~Ll 182 (320) T g1d4m.1 160 LGRAGYTIHVQCNA-SKFHQGCLL 182 (320) T ss_dssp EEEEEEEEEEECCC-CTTCEEEEE T ss_pred HHCCCEEEEEEECC-CHHCCCEEE T ss_conf 14277599999789-843011688 No 33 >d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Probab=21.32 E-value=19 Score=13.07 Aligned_cols=35 Identities=26% Similarity=0.174 Sum_probs=14.6 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHH Q ss_conf 99999888638731478999999998179998899 Q gi|254780979|r 394 LGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEI 428 (500) Q Consensus 394 laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~i 428 (500) +.-||..+-....+..++..++..+++.-.+|+++ T Consensus 21 f~~LV~~ILsqqT~~~~v~~v~~~L~~~~pt~e~l 55 (144) T d1ngna_ 21 WKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVA 55 (144) T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH T ss_conf 99999999986097999999999999867710211 No 34 >d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]} Probab=21.18 E-value=7.3 Score=16.06 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=26.4 Q ss_pred HHHHHHCCC-CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 999731398-003443233755433665303566777783327787731269 Q gi|254780979|r 257 QIAILEDGG-HIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEID 307 (500) Q Consensus 257 Q~~ll~~G~-~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is 307 (500) -.++++..+ .+...+|+|| -|+.++|+ .+||+.|+|.|.|| T Consensus 88 i~~~l~~~gi~~~~~~~glD--HG~~vPL~--------~m~p~~~~pvv~iS 129 (258) T d2pw6a1 88 LVELLAPIPVTLDKEAWGFD--HGSWGVLI--------KMYPDADIPMVQLS 129 (258) T ss_dssp HHHHHTTSCEEEESSCCCCC--HHHHHHHH--------HHSTTCCSCEEEEE T ss_pred HHHHHCCCCCCCCCCCCCCC--CCCEEEEE--------EECCCCCCEEEEEE T ss_conf 99874357842357776654--45423466--------73576661289973 No 35 >g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human rhinovirus 16, (HRV-16) [TaxId: 31708]} Probab=20.89 E-value=18 Score=13.11 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=39.4 Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCC-----CC--CC--CCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCC Q ss_conf 0338989997888689865558842-----46--89--876520613026898887378999999999877829762442 Q gi|254780979|r 22 WEVVIGIEVHAQLSVVSKLFSGASV-----NF--GA--EPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKY 92 (500) Q Consensus 22 ~e~vIGLEiH~qL~t~tKlFc~c~~-----~~--~~--~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~ 92 (500) |-.-.|-+||||.|+ ||--++|-- || +. ..+.+ ..+...+||. .+...+...... T Consensus 135 ~l~R~Gw~V~VQcNa-SkFH~G~LlV~~VPE~~~~~~~~~~~~-~~~~~t~~~~--------------~~~~~~~~~~~~ 198 (296) T g1aym.1 135 FLGRSGYTVHVQCNA-SKFHQGTLLVVMIPEHQLATVNKGNVN-AGYKYTHPGE--------------AGREVGTQVENE 198 (296) T ss_dssp EEEEEEEEEEEECCC-CTTCEEEEEEEEEETCCCCCBSSTTCC-CCGGGGCCGG--------------GCEETTTSCCCT T ss_pred HHHHCCEEEEEEECC-CCCCCCEEEEEECCCEEECCCCCCCCC-CCHHCCCCCC--------------CCCCCCCCCCCC T ss_conf 776187199999758-866530689998323132356777645-3000158776--------------674135433455 Q ss_pred CEEECCCEECCCCCCCCCCCCC Q ss_conf 0131132123767888201445 Q gi|254780979|r 93 SVFARKNYFYPDLPQGYQISQH 114 (500) Q Consensus 93 ~~fdRK~YfYpDlpkgyQiTQ~ 114 (500) ..+..++||-.|-..=.|.|=| T Consensus 199 ~~~~~~~~~~~~g~~~~qltif 220 (296) T g1aym.1 199 KQPSDDNWLNFDGTLLGNLLIF 220 (296) T ss_dssp TCCCCCGGGTTTTBCGGGGGGS T ss_pred CCCCCCCEECCCCEECCCEEEC T ss_conf 6656542254588230340254 Done!