RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus Liberibacter asiaticus str. psy62] (500 letters) >3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B (B:1-292) Length = 292 Score = 405 bits (1042), Expect = e-114 Identities = 140/299 (46%), Positives = 192/299 (64%), Gaps = 9/299 (3%) Query: 21 DWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVM 80 +E VIG+EVH +L SK+FS + +FGAEPN+ + D A PG+LP++N R V A+ Sbjct: 2 HFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMR 61 Query: 81 TGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIE 140 + LN I S F RKNYFYPD P+ YQISQ D+PI G + + + T Sbjct: 62 AAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEV------DGETKR 115 Query: 141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSI 200 +GI R+H+E+DAGKS H S +DLNR G L+EIV++PD+RS EA A+L KLRSI Sbjct: 116 IGITRLHMEEDAGKSTHKGE--YSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSI 173 Query: 201 LRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQIA 259 ++Y G D MEEGS+R D N+S+ G E +GT+ E+KN+NS ++ +EYE +RQ Sbjct: 174 IQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEE 233 Query: 260 ILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQI 318 L +GG I QETR FD S +T +R KE + DYRYF EPD++PL ID+ + +++ I Sbjct: 234 ELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTI 292 >3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B* (B:1-296) Length = 296 Score = 398 bits (1025), Expect = e-112 Identities = 149/300 (49%), Positives = 210/300 (70%), Gaps = 8/300 (2%) Query: 21 DWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVM 80 +E VIG+E+H Q+ +K+F G V FGAEPNT V MPG LPI+N R V+ A+ Sbjct: 4 KYEAVIGLEIHVQMDTKTKMFCGCKVEFGAEPNTNVCPVCLGMPGALPIVNKRAVEYAIR 63 Query: 81 TGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIE 140 L LN +++ SVFARK+YFYPDLP+GYQISQ++KP+ G V +++ + + Sbjct: 64 ASLALNCEVHEESVFARKHYFYPDLPKGYQISQYEKPLATNGWVELNLPNGE-----KKK 118 Query: 141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSI 200 V I R+H+E+DAGK+IH+ + +DLNR+G LMEIVT+PD+R+ EA+ FL KLR+I Sbjct: 119 VRIRRLHIEEDAGKNIHE--GDKTLVDLNRAGTPLMEIVTEPDIRTPEEARLFLEKLRNI 176 Query: 201 LRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQIA 259 +RY G +ME+G +R D+NVS+ G + +GTR E+KNVNS RF+ A+EYE RQI Sbjct: 177 MRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTRVEIKNVNSFRFVQKALEYEIERQIN 236 Query: 260 ILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIP 319 ++E+GG + QETR FDP +T +RTKE+A DYRYF +PDL+PL++ +++I IKK +P Sbjct: 237 VVEEGGEVVQETRTFDPQTGKTYPMRTKEEAEDYRYFPDPDLVPLKVKKEWIEEIKKNMP 296 >1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} (C:1-280,C:408-456) Length = 329 Score = 310 bits (795), Expect = 3e-85 Identities = 74/347 (21%), Positives = 116/347 (33%), Gaps = 77/347 (22%) Query: 21 DWEVVIGIEVHAQLSVVSKLFSGASVNFGAEP--------NTQVSFFDAAMPGMLPILNG 72 + + +G+E+H QL KLFS + +S P L Sbjct: 12 ELGLKVGLEIHRQLD-TKKLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFK- 69 Query: 73 RCVQQAVMTGLGLNAHINKYSVF---------------------------------ARKN 99 + + N + RK Sbjct: 70 ----KGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKI 125 Query: 100 YFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQ 159 G+Q + I +GKV VGI I LE+DA + I + Sbjct: 126 VIDGSNVSGFQRTA---IIATDGKVETP----------WGAVGIPTICLEEDAARIIERK 172 Query: 160 YSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRAD 219 L+R G+ L+EI T PD+ +AK + LR G++R D Sbjct: 173 -DKEVIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVK--RGLGTIRQD 229 Query: 220 VNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIRQETRLFDPS-- 277 +NVS+ G R E+K V + + + IE E RQ+ +L+ +R+ P Sbjct: 230 LNVSI-----KGGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKPEET 284 Query: 278 -----KNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIP 319 T +R R + E D+ PL I +D + IK+ +P Sbjct: 285 RRALPDGNTEYMRPLPGK--ARMYPETDIPPLRIPDDLKKKIKENLP 329 >2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} (C:1-273,C:395-445) Length = 324 Score = 308 bits (791), Expect = 9e-85 Identities = 77/335 (22%), Positives = 138/335 (41%), Gaps = 47/335 (14%) Query: 21 DWEVV---IGIEVHAQLSVVSKLFSGASVNF-GAEPNTQVSFFDAAMPGMLPILNGRCVQ 76 DWE V +G+E+H QL SKLF +EP+ + L + + Sbjct: 2 DWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAFE 61 Query: 77 QAVMTGLGLNAHINKYS--VFARKNYFYPDLPQGYQISQH-----DKPIVGEGKV----- 124 +A+ + ++ + V A + +P P+ +I+ + +V E Sbjct: 62 EAMRKLHFHYENYHEETCLVEADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQV 121 Query: 125 -----------SVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGV 173 + + D + V IE + LE+DA + I + L+R G+ Sbjct: 122 IDGSNTGGFQRTGLVATDGHLETPQGTVKIENLCLEEDAARRIRETGD-GVVFRLDRLGI 180 Query: 174 ALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGT 233 L+EI T P M + + ++ ILR G++R D+N+S+ G Sbjct: 181 PLVEITTDPSMSDPQQLREVAYQIGQILRSTRVK---RGLGTIRQDLNISI-----RDGA 232 Query: 234 RCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIRQ--------ETRLFDPSKNETRSLR 285 R EVK V + + +E E +RQ++++E +++ ETR P N T+ LR Sbjct: 233 RVEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQERGAVVVPEETRKALPDGN-TQYLR 291 Query: 286 TKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPE 320 + R + E D+ I++D + I++ +PE Sbjct: 292 PLPTS--SRMYLETDIPLFRIEDDLLEGIRRNLPE 324 >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} (A:378-387,A:511-851) Length = 351 Score = 234 bits (597), Expect = 2e-62 Identities = 61/335 (18%), Positives = 109/335 (32%), Gaps = 29/335 (8%) Query: 179 VTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVK 238 V P+ ++ + + R + E Sbjct: 28 VPHPEGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLRGY---VE-- 82 Query: 239 NVNSIRFLGLAIEYEARRQIAILEDGGHIRQE---------TRLFDPSKNETRSLRTKED 289 S+ Y+ RQ D + + R+ + + Sbjct: 83 --PSVAGDPADTRYQFERQGYFWRDPVELERVDSREDALVFGRIITLKDTWGKQGGGTQQ 140 Query: 290 ALDYRYFSEP-----DLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEF--GISLYDASV 342 + + D + E +A + L + F G S DA Sbjct: 141 KAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTRLLGLGASEGDART 200 Query: 343 LVSDKSIADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLII 402 + D ++ + A VA+W +N+L+ L + + L L + + Sbjct: 201 IARDPALLAFVGGAAPGDTFAQVASWTVNELVAGLR-----AGEVKVRAADLAPLAEGVA 255 Query: 403 DGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARI- 461 G +S +IA++ G P I+E GL A+++VV +VI +NP+ Sbjct: 256 SGQLSARIAREALARAAASGDAPLTIIEREGLNAGLSAEALQQVVAQVIAANPDKAEAYR 315 Query: 462 ATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKL 496 K L+ +F GQVM+ T GKA+P + LK+ L Sbjct: 316 GGKTALLGFFTGQVMRATAGKADPQALAAALKDAL 350 >3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B* (B:297-478) Length = 182 Score = 187 bits (475), Expect = 4e-48 Identities = 78/179 (43%), Positives = 121/179 (67%), Gaps = 2/179 (1%) Query: 320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVN-RDKKIVANWVINDLLGVLN 378 ELPD + ER I E+G+S Y+A +LV+ K + D+FE+ + ++ K + NW+INDLLG+L Sbjct: 1 ELPDQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKEPKGIVNWLINDLLGLLR 60 Query: 379 RSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQVT 438 G SIE++P+ P L EL+ LI + IS KI K++ + E G TP +IVEE GL+Q+T Sbjct: 61 DKGISIEESPVKPEHLAELVKLIKEKVISTKIGKEVIKEMVETGKTPSQIVEEKGLKQIT 120 Query: 439 DLSAIEKVVDEVINSNPNNVARI-ATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKL 496 D + I+++V ++ +P V R+ + L+ +FVGQVM+ T GKANP +V K+++E + Sbjct: 121 DENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVGQVMRETRGKANPQVVNKVIRELV 179 >2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} (C:446-619) Length = 174 Score = 170 bits (433), Expect = 3e-43 Identities = 38/176 (21%), Positives = 82/176 (46%), Gaps = 6/176 (3%) Query: 321 LPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNRDKKIVANWVINDLLGVLNRS 380 LP K+ER + ++G+S AS LV + ++ D ++A+ + L + Sbjct: 1 LPSEKKERIMRDYGLSEDLASQLVKRNLVDEFEALTEFRVDTTVIASLLAYTLRELRRE- 59 Query: 381 GKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQVTDL 440 + + ++L + I L+ G IS +DI + ++G ++ +L L + + Sbjct: 60 --GHDVDGLGLDELRDAIKLLEVGKISKDALRDIVACMADEGLAAEDAARKLNLLLLAE- 116 Query: 441 SAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKL 496 IE ++ E++ N + ++ + +GQ M G+A+ +V ++L+EK+ Sbjct: 117 DEIESIIQEIVEGNLDMIS--ERGMGAMGPLMGQAMGRLRGRADGKVVNRILREKI 170 >1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} (C:457-633) Length = 177 Score = 167 bits (425), Expect = 2e-42 Identities = 43/178 (24%), Positives = 87/178 (48%), Gaps = 8/178 (4%) Query: 320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNRDKKIVANWVINDLLGVLNR 379 ELP AK ER++ E+ + A LV D+ + E +++ + A+ ++ L G+ Sbjct: 1 ELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEELVSMGVKPSLAASILVVVLKGLRK- 59 Query: 380 SGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILW-EKGGTPKEIVEELGLRQVT 438 + ++ + E L ++G I+ + ++IF L + +E+ EE GL ++ Sbjct: 60 ---EVPIENVTDEHIREAFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLS 116 Query: 439 DLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKL 496 + + ++++EVI N V A + +G+VM GKA+ +V ++++ KL Sbjct: 117 E-EEVTRIIEEVIQQNIEVVK--AKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKL 171 >3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B (B:293-411) Length = 119 Score = 161 bits (410), Expect = 1e-40 Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 1/119 (0%) Query: 319 PELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKL-AVNRDKKIVANWVINDLLGVL 377 PELPD ++ +++ E G+ YDA VL K ++D+FE D K+ +NW++ + L Sbjct: 1 PELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYL 60 Query: 378 NRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQ 436 N++ + DT ++P L +I LI DGT+S KIAK +F L KGG K+I+E+ GL Q Sbjct: 61 NKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQ 119 >3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B (B:412-483) Length = 72 Score = 78.9 bits (195), Expect = 1e-15 Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Query: 437 VTDLSAIEKVVDEVINSNPNNVARI-ATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEK 495 ++D + + K V+E +++N +V K + + VGQ+MK + G+ANP +V ++LK++ Sbjct: 1 ISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQE 60 Query: 496 LGIK 499 L + Sbjct: 61 LDKR 64 >1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} (A:93-148) Length = 56 Score = 61.1 bits (149), Expect = 3e-10 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 7/61 (11%) Query: 436 QVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEK 495 Q+++ + +V+E I A+ + +G +M GKA+ S++ K++ + Sbjct: 2 QLSE-EELRTIVNETIAEVG------ASSKADMGKVMGAIMPKVKGKADGSLINKLVSSQ 54 Query: 496 L 496 L Sbjct: 55 L 55 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 34.8 bits (79), Expect = 0.025 Identities = 16/137 (11%), Positives = 38/137 (27%), Gaps = 33/137 (24%) Query: 349 IADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTIS- 407 I D ++ + K + + + + + TP G ++DL+ + Sbjct: 205 IMDVVTEMGKYTEVKTAFG-IKDSVPKGAKIDAQIVIGTP------GTVMDLMKRRQLDA 257 Query: 408 ---GKIAKDIFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARI--- 461 D + + ++ G + + + P N + Sbjct: 258 RDIKVFVLDEADNMLDQQG-------------------LGDQSMRIKHLLPRNTQIVLFS 298 Query: 462 ATKPNLVSWFVGQVMKN 478 AT V + + N Sbjct: 299 ATFSERVEKYAERFAPN 315 Score = 30.9 bits (69), Expect = 0.34 Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 5/68 (7%) Query: 255 RRQIAILEDGGHIRQET--RLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIR 312 + I T + D K R D + ++L + D Sbjct: 226 DSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDAR---DIKVFVLDEADNMLDQQGLGDQSM 282 Query: 313 AIKKQIPE 320 IK +P Sbjct: 283 RIKHLLPR 290 >1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} (A:139-242) Length = 104 Score = 30.9 bits (70), Expect = 0.32 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 1/49 (2%) Query: 285 RTKEDAL-DYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGE 332 R +EDAL R L + D +AI + P L ER E Sbjct: 12 RFREDALRXXRAVRFVSELGFALAPDTEQAIVQNAPLLAHISVERXTXE 60 >2o4t_A BH3976 protein; 10176601, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.95A {Bacillus halodurans} (A:1-74) Length = 74 Score = 30.4 bits (69), Expect = 0.50 Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 6/40 (15%) Query: 393 QLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEEL 432 L E++ +G +GK D+ G + L Sbjct: 39 LLSEILGFFEEGAAAGKGVLDVT------GTDVAAFCDAL 72 >1apj_A Fibrillin; microfibril, TB module, marfan syndrome, connective tissue, novel fold, extracellular matrix; NMR {Homo sapiens} (A:1-48) Length = 48 Score = 28.6 bits (64), Expect = 1.9 Identities = 10/33 (30%), Positives = 10/33 (30%), Gaps = 4/33 (12%) Query: 205 GTCDGNMEEGSMRADVNVSVC-RPGEAWGTRCE 236 G C S C GE WG CE Sbjct: 17 GKCSSPK---SRNHSKQECCCALKGEGWGDPCE 46 >2od0_A Hypothetical protein VP1028; structural genomics, unknown function, PSI-2, protein structure initiative; 1.95A {Vibrio parahaemolyticus rimd 2210633} (A:) Length = 105 Score = 27.8 bits (62), Expect = 3.1 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 9/59 (15%) Query: 307 DEDFIRAIKKQIPELPDAKRERFIGEFGISLYDASV---------LVSDKSIADYFEKL 356 D+ ++ K L K G FG+ + + +D+ + FE Sbjct: 2 DKPILKDSXKLFEALGTIKSRSXFGGFGLFADETXFALVVNNQLHIRADQQTSSDFETQ 60 >2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} (A:317-705) Length = 389 Score = 27.7 bits (60), Expect = 3.2 Identities = 9/72 (12%), Positives = 21/72 (29%), Gaps = 1/72 (1%) Query: 258 IAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQ 317 + D R+ + + + + +L+ Y D P+ R +K + Sbjct: 314 ACPVLDPTLRREIIDILEIQLRDNIKACRIDSSLNNIYKHNSDEKPVRAQAAIYRYLKGK 373 Query: 318 IPELP-DAKRER 328 P + Sbjct: 374 EETTPAAKEGHH 385 >1ksq_A Latent transforming growth factor beta binding protein 1; structure, LTBP-1, TGF-beta, TB domain, latency associated propeptide, LAP; NMR {Homo sapiens} (A:) Length = 75 Score = 27.5 bits (61), Expect = 4.2 Identities = 6/12 (50%), Positives = 6/12 (50%) Query: 225 CRPGEAWGTRCE 236 C G WG CE Sbjct: 37 CTSGAGWGDNCE 48 >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} (A:160-378,A:434-480) Length = 266 Score = 27.4 bits (61), Expect = 4.7 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 7/42 (16%) Query: 465 PNLVSWFVGQ----VMKNTGGKANPSIVQK---MLKEKLGIK 499 P LVS F+ + + K+ G N L LGIK Sbjct: 1 PGLVSHFIKEALLNIAKDNGLTINRPKNAAEWANLAXTLGIK 42 >1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} (A:203-282) Length = 80 Score = 27.0 bits (60), Expect = 5.1 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%) Query: 285 RTKEDALD----YRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEF 333 R +ED L +R++ P + D + + AI + L ER E Sbjct: 2 RIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVEL 54 >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} (A:45-94) Length = 50 Score = 27.1 bits (60), Expect = 5.4 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%) Query: 207 CDGNMEEGSMRADVNVSVCRPGEAWGTRCE 236 C + G +A C G+AWGT CE Sbjct: 20 CSNEIGVGVSKASC---CCSLGKAWGTPCE 46 >2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus luminescens subsp} (A:1-357) Length = 357 Score = 26.8 bits (58), Expect = 5.7 Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 3/42 (7%) Query: 293 YRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFG 334 Y S + L + E A+ K D +G Sbjct: 162 YILKSSAEALKEFLKESVKTALDK-ADTEEDM--NDLFNTWG 200 >3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A (A:1-105,A:202-373) Length = 277 Score = 26.9 bits (59), Expect = 5.9 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 4/58 (6%) Query: 206 TCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILED 263 + + + A +NV CR + G ++ + A++ ++AIL D Sbjct: 48 CWNVDTLVKMIDAGMNV--CRLNFSHGDHETHART--VQNIQEAMKQRPEARLAILLD 101 >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (A:262-394) Length = 133 Score = 26.7 bits (59), Expect = 6.8 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%) Query: 272 RLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQ 317 +++ + +L K YF + D PL I E+++ Sbjct: 32 QIYSDIGSRNFTLNDKIAL----YFDDFDFTPLMIQENYLSTRPSV 73 >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold, motor, ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A (A:142-422) Length = 281 Score = 26.4 bits (57), Expect = 8.1 Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 9/96 (9%) Query: 106 PQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSC 165 + + + + G G L + + Sbjct: 163 FGAARNVEEGGSLTIIATALIDTGSKXDEVIYEEFKGTGNXELHLSRKIAEKRVFP---A 219 Query: 166 IDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSIL 201 ID NRSG E++T + LR I+ Sbjct: 220 IDYNRSGTRKEELLTTQEE------LQKXWILRKII 249 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.136 0.387 Gapped Lambda K H 0.267 0.0474 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,767,046 Number of extensions: 175414 Number of successful extensions: 476 Number of sequences better than 10.0: 1 Number of HSP's gapped: 438 Number of HSP's successfully gapped: 30 Length of query: 500 Length of database: 4,956,049 Length adjustment: 92 Effective length of query: 408 Effective length of database: 1,845,989 Effective search space: 753163512 Effective search space used: 753163512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 56 (26.0 bits)