RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA
amidotransferase subunit B [Candidatus Liberibacter asiaticus str.
psy62]
         (500 letters)



>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B;
           multi protein complex, ligase, ATP-binding, nucleotide-
           binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B
           2dqn_B* 2g5h_B 2g5i_B* 2f2a_B (B:1-292)
          Length = 292

 Score =  405 bits (1042), Expect = e-114
 Identities = 140/299 (46%), Positives = 192/299 (64%), Gaps = 9/299 (3%)

Query: 21  DWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVM 80
            +E VIG+EVH +L   SK+FS +  +FGAEPN+  +  D A PG+LP++N R V  A+ 
Sbjct: 2   HFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMR 61

Query: 81  TGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIE 140
             + LN  I   S F RKNYFYPD P+ YQISQ D+PI   G + + +         T  
Sbjct: 62  AAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEV------DGETKR 115

Query: 141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSI 200
           +GI R+H+E+DAGKS H      S +DLNR G  L+EIV++PD+RS  EA A+L KLRSI
Sbjct: 116 IGITRLHMEEDAGKSTHKGE--YSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSI 173

Query: 201 LRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQIA 259
           ++Y G  D  MEEGS+R D N+S+   G E +GT+ E+KN+NS  ++   +EYE +RQ  
Sbjct: 174 IQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEE 233

Query: 260 ILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQI 318
            L +GG I QETR FD S  +T  +R KE + DYRYF EPD++PL ID+ +   +++ I
Sbjct: 234 ELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTI 292


>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B;
           multi protein complex, ligase, protein biosynthesis;
           HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
           (B:1-296)
          Length = 296

 Score =  398 bits (1025), Expect = e-112
 Identities = 149/300 (49%), Positives = 210/300 (70%), Gaps = 8/300 (2%)

Query: 21  DWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVM 80
            +E VIG+E+H Q+   +K+F G  V FGAEPNT V      MPG LPI+N R V+ A+ 
Sbjct: 4   KYEAVIGLEIHVQMDTKTKMFCGCKVEFGAEPNTNVCPVCLGMPGALPIVNKRAVEYAIR 63

Query: 81  TGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIE 140
             L LN  +++ SVFARK+YFYPDLP+GYQISQ++KP+   G V +++   +       +
Sbjct: 64  ASLALNCEVHEESVFARKHYFYPDLPKGYQISQYEKPLATNGWVELNLPNGE-----KKK 118

Query: 141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSI 200
           V I R+H+E+DAGK+IH+     + +DLNR+G  LMEIVT+PD+R+  EA+ FL KLR+I
Sbjct: 119 VRIRRLHIEEDAGKNIHE--GDKTLVDLNRAGTPLMEIVTEPDIRTPEEARLFLEKLRNI 176

Query: 201 LRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQIA 259
           +RY G    +ME+G +R D+NVS+   G + +GTR E+KNVNS RF+  A+EYE  RQI 
Sbjct: 177 MRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTRVEIKNVNSFRFVQKALEYEIERQIN 236

Query: 260 ILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIP 319
           ++E+GG + QETR FDP   +T  +RTKE+A DYRYF +PDL+PL++ +++I  IKK +P
Sbjct: 237 VVEEGGEVVQETRTFDPQTGKTYPMRTKEEAEDYRYFPDPDLVPLKVKKEWIEEIKKNMP 296


>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D
           structure, asparaginase 1 family, GATD subfamily, lyase;
           3.00A {Pyrococcus abyssi} (C:1-280,C:408-456)
          Length = 329

 Score =  310 bits (795), Expect = 3e-85
 Identities = 74/347 (21%), Positives = 116/347 (33%), Gaps = 77/347 (22%)

Query: 21  DWEVVIGIEVHAQLSVVSKLFSGASVNFGAEP--------NTQVSFFDAAMPGMLPILNG 72
           +  + +G+E+H QL    KLFS        +            +S      P  L     
Sbjct: 12  ELGLKVGLEIHRQLD-TKKLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFK- 69

Query: 73  RCVQQAVMTGLGLNAHINKYSVF---------------------------------ARKN 99
               +  +     N  +                                        RK 
Sbjct: 70  ----KGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKI 125

Query: 100 YFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQ 159
                   G+Q +     I  +GKV                VGI  I LE+DA + I  +
Sbjct: 126 VIDGSNVSGFQRTA---IIATDGKVETP----------WGAVGIPTICLEEDAARIIERK 172

Query: 160 YSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRAD 219
                   L+R G+ L+EI T PD+    +AK     +   LR           G++R D
Sbjct: 173 -DKEVIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVK--RGLGTIRQD 229

Query: 220 VNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIRQETRLFDPS-- 277
           +NVS+       G R E+K V  +  + + IE E  RQ+ +L+    +R+      P   
Sbjct: 230 LNVSI-----KGGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKPEET 284

Query: 278 -----KNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIP 319
                   T  +R        R + E D+ PL I +D  + IK+ +P
Sbjct: 285 RRALPDGNTEYMRPLPGK--ARMYPETDIPPLRIPDDLKKKIKENLP 329


>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase,
           ligase/RNA complex; 3.15A
           {Methanothermobacterthermautotrophicus}
           (C:1-273,C:395-445)
          Length = 324

 Score =  308 bits (791), Expect = 9e-85
 Identities = 77/335 (22%), Positives = 138/335 (41%), Gaps = 47/335 (14%)

Query: 21  DWEVV---IGIEVHAQLSVVSKLFSGASVNF-GAEPNTQVSFFDAAMPGMLPILNGRCVQ 76
           DWE V   +G+E+H QL   SKLF         +EP+  +          L   +    +
Sbjct: 2   DWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAFE 61

Query: 77  QAVMTGLGLNAHINKYS--VFARKNYFYPDLPQGYQISQH-----DKPIVGEGKV----- 124
           +A+        + ++ +  V A +   +P  P+  +I+       +  +V E        
Sbjct: 62  EAMRKLHFHYENYHEETCLVEADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQV 121

Query: 125 -----------SVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGV 173
                      +  +  D   +     V IE + LE+DA + I +         L+R G+
Sbjct: 122 IDGSNTGGFQRTGLVATDGHLETPQGTVKIENLCLEEDAARRIRETGD-GVVFRLDRLGI 180

Query: 174 ALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGT 233
            L+EI T P M    + +    ++  ILR           G++R D+N+S+       G 
Sbjct: 181 PLVEITTDPSMSDPQQLREVAYQIGQILRSTRVK---RGLGTIRQDLNISI-----RDGA 232

Query: 234 RCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIRQ--------ETRLFDPSKNETRSLR 285
           R EVK V  +  +   +E E +RQ++++E    +++        ETR   P  N T+ LR
Sbjct: 233 RVEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQERGAVVVPEETRKALPDGN-TQYLR 291

Query: 286 TKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPE 320
               +   R + E D+    I++D +  I++ +PE
Sbjct: 292 PLPTS--SRMYLETDIPLFRIEDDLLEGIRRNLPE 324


>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class
           I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
           radiodurans} (A:378-387,A:511-851)
          Length = 351

 Score =  234 bits (597), Expect = 2e-62
 Identities = 61/335 (18%), Positives = 109/335 (32%), Gaps = 29/335 (8%)

Query: 179 VTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVK 238
           V  P+  ++                    +           +     R    +    E  
Sbjct: 28  VPHPEGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLRGY---VE-- 82

Query: 239 NVNSIRFLGLAIEYEARRQIAILEDGGHIRQE---------TRLFDPSKNETRSLRTKED 289
              S+        Y+  RQ     D   + +           R+        +     + 
Sbjct: 83  --PSVAGDPADTRYQFERQGYFWRDPVELERVDSREDALVFGRIITLKDTWGKQGGGTQQ 140

Query: 290 ALDYRYFSEP-----DLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEF--GISLYDASV 342
             + +          D +  E      +A   +   L   +   F      G S  DA  
Sbjct: 141 KAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTRLLGLGASEGDART 200

Query: 343 LVSDKSIADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLII 402
           +  D ++  +    A       VA+W +N+L+  L        +  +    L  L + + 
Sbjct: 201 IARDPALLAFVGGAAPGDTFAQVASWTVNELVAGLR-----AGEVKVRAADLAPLAEGVA 255

Query: 403 DGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARI- 461
            G +S +IA++        G  P  I+E  GL       A+++VV +VI +NP+      
Sbjct: 256 SGQLSARIAREALARAAASGDAPLTIIEREGLNAGLSAEALQQVVAQVIAANPDKAEAYR 315

Query: 462 ATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKL 496
             K  L+ +F GQVM+ T GKA+P  +   LK+ L
Sbjct: 316 GGKTALLGFFTGQVMRATAGKADPQALAAALKDAL 350


>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B;
           multi protein complex, ligase, protein biosynthesis;
           HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
           (B:297-478)
          Length = 182

 Score =  187 bits (475), Expect = 4e-48
 Identities = 78/179 (43%), Positives = 121/179 (67%), Gaps = 2/179 (1%)

Query: 320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVN-RDKKIVANWVINDLLGVLN 378
           ELPD + ER I E+G+S Y+A +LV+ K + D+FE+   + ++ K + NW+INDLLG+L 
Sbjct: 1   ELPDQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKEPKGIVNWLINDLLGLLR 60

Query: 379 RSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQVT 438
             G SIE++P+ P  L EL+ LI +  IS KI K++   + E G TP +IVEE GL+Q+T
Sbjct: 61  DKGISIEESPVKPEHLAELVKLIKEKVISTKIGKEVIKEMVETGKTPSQIVEEKGLKQIT 120

Query: 439 DLSAIEKVVDEVINSNPNNVARI-ATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKL 496
           D + I+++V ++   +P  V R+   +  L+ +FVGQVM+ T GKANP +V K+++E +
Sbjct: 121 DENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVGQVMRETRGKANPQVVNKVIRELV 179


>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase,
           ligase/RNA complex; 3.15A
           {Methanothermobacterthermautotrophicus} (C:446-619)
          Length = 174

 Score =  170 bits (433), Expect = 3e-43
 Identities = 38/176 (21%), Positives = 82/176 (46%), Gaps = 6/176 (3%)

Query: 321 LPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNRDKKIVANWVINDLLGVLNRS 380
           LP  K+ER + ++G+S   AS LV    + ++        D  ++A+ +   L  +    
Sbjct: 1   LPSEKKERIMRDYGLSEDLASQLVKRNLVDEFEALTEFRVDTTVIASLLAYTLRELRRE- 59

Query: 381 GKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQVTDL 440
               +   +  ++L + I L+  G IS    +DI   + ++G   ++   +L L  + + 
Sbjct: 60  --GHDVDGLGLDELRDAIKLLEVGKISKDALRDIVACMADEGLAAEDAARKLNLLLLAE- 116

Query: 441 SAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKL 496
             IE ++ E++  N + ++        +   +GQ M    G+A+  +V ++L+EK+
Sbjct: 117 DEIESIIQEIVEGNLDMIS--ERGMGAMGPLMGQAMGRLRGRADGKVVNRILREKI 170


>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D
           structure, asparaginase 1 family, GATD subfamily, lyase;
           3.00A {Pyrococcus abyssi} (C:457-633)
          Length = 177

 Score =  167 bits (425), Expect = 2e-42
 Identities = 43/178 (24%), Positives = 87/178 (48%), Gaps = 8/178 (4%)

Query: 320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNRDKKIVANWVINDLLGVLNR 379
           ELP AK ER++ E+ +    A  LV D+    + E +++     + A+ ++  L G+   
Sbjct: 1   ELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEELVSMGVKPSLAASILVVVLKGLRK- 59

Query: 380 SGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILW-EKGGTPKEIVEELGLRQVT 438
               +    ++   + E   L ++G I+ +  ++IF  L      + +E+ EE GL  ++
Sbjct: 60  ---EVPIENVTDEHIREAFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLS 116

Query: 439 DLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKL 496
           +   + ++++EVI  N   V   A     +   +G+VM    GKA+  +V ++++ KL
Sbjct: 117 E-EEVTRIIEEVIQQNIEVVK--AKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKL 171


>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B;
           multi protein complex, ligase, ATP-binding, nucleotide-
           binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B
           2dqn_B* 2g5h_B 2g5i_B* 2f2a_B (B:293-411)
          Length = 119

 Score =  161 bits (410), Expect = 1e-40
 Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 1/119 (0%)

Query: 319 PELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKL-AVNRDKKIVANWVINDLLGVL 377
           PELPD ++ +++ E G+  YDA VL   K ++D+FE       D K+ +NW++  +   L
Sbjct: 1   PELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYL 60

Query: 378 NRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQ 436
           N++   + DT ++P  L  +I LI DGT+S KIAK +F  L  KGG  K+I+E+ GL Q
Sbjct: 61  NKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQ 119


>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B;
           multi protein complex, ligase, ATP-binding, nucleotide-
           binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B
           2dqn_B* 2g5h_B 2g5i_B* 2f2a_B (B:412-483)
          Length = 72

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 437 VTDLSAIEKVVDEVINSNPNNVARI-ATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEK 495
           ++D + + K V+E +++N  +V      K   + + VGQ+MK + G+ANP +V ++LK++
Sbjct: 1   ISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQE 60

Query: 496 LGIK 499
           L  +
Sbjct: 61  LDKR 64


>1ng6_A Hypothetical protein YQEY; structural genomics, domain
           GATB/YQEY, PFAM02637, DUF186, PSI, protein structure
           initiative; 1.40A {Bacillus subtilis} (A:93-148)
          Length = 56

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 436 QVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEK 495
           Q+++   +  +V+E I          A+    +   +G +M    GKA+ S++ K++  +
Sbjct: 2   QLSE-EELRTIVNETIAEVG------ASSKADMGKVMGAIMPKVKGKADGSLINKLVSSQ 54

Query: 496 L 496
           L
Sbjct: 55  L 55


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 34.8 bits (79), Expect = 0.025
 Identities = 16/137 (11%), Positives = 38/137 (27%), Gaps = 33/137 (24%)

Query: 349 IADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTIS- 407
           I D   ++    + K     + + +        + +  TP      G ++DL+    +  
Sbjct: 205 IMDVVTEMGKYTEVKTAFG-IKDSVPKGAKIDAQIVIGTP------GTVMDLMKRRQLDA 257

Query: 408 ---GKIAKDIFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARI--- 461
                   D  + + ++ G                   +      + +  P N   +   
Sbjct: 258 RDIKVFVLDEADNMLDQQG-------------------LGDQSMRIKHLLPRNTQIVLFS 298

Query: 462 ATKPNLVSWFVGQVMKN 478
           AT    V  +  +   N
Sbjct: 299 ATFSERVEKYAERFAPN 315



 Score = 30.9 bits (69), Expect = 0.34
 Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 5/68 (7%)

Query: 255 RRQIAILEDGGHIRQET--RLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIR 312
                  +    I   T   + D  K      R   D   +      ++L  +   D   
Sbjct: 226 DSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDAR---DIKVFVLDEADNMLDQQGLGDQSM 282

Query: 313 AIKKQIPE 320
            IK  +P 
Sbjct: 283 RIKHLLPR 290


>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase,
           translation, transferase; HET: ATP; 3.00A {Geobacillus
           stearothermophilus} (A:139-242)
          Length = 104

 Score = 30.9 bits (70), Expect = 0.32
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 285 RTKEDAL-DYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGE 332
           R +EDAL   R       L   +  D  +AI +  P L     ER   E
Sbjct: 12  RFREDALRXXRAVRFVSELGFALAPDTEQAIVQNAPLLAHISVERXTXE 60


>2o4t_A BH3976 protein; 10176601, structural genomics, joint center
           for structural genomics, JCSG, protein structure
           initiative, PSI-2; 1.95A {Bacillus halodurans} (A:1-74)
          Length = 74

 Score = 30.4 bits (69), Expect = 0.50
 Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 6/40 (15%)

Query: 393 QLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEEL 432
            L E++    +G  +GK   D+       G       + L
Sbjct: 39  LLSEILGFFEEGAAAGKGVLDVT------GTDVAAFCDAL 72


>1apj_A Fibrillin; microfibril, TB module, marfan syndrome,
           connective tissue, novel fold, extracellular matrix; NMR
           {Homo sapiens} (A:1-48)
          Length = 48

 Score = 28.6 bits (64), Expect = 1.9
 Identities = 10/33 (30%), Positives = 10/33 (30%), Gaps = 4/33 (12%)

Query: 205 GTCDGNMEEGSMRADVNVSVC-RPGEAWGTRCE 236
           G C       S         C   GE WG  CE
Sbjct: 17  GKCSSPK---SRNHSKQECCCALKGEGWGDPCE 46


>2od0_A Hypothetical protein VP1028; structural genomics, unknown
           function, PSI-2, protein structure initiative; 1.95A
           {Vibrio parahaemolyticus rimd 2210633} (A:)
          Length = 105

 Score = 27.8 bits (62), Expect = 3.1
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 9/59 (15%)

Query: 307 DEDFIRAIKKQIPELPDAKRERFIGEFGISLYDASV---------LVSDKSIADYFEKL 356
           D+  ++   K    L   K     G FG+   +            + +D+  +  FE  
Sbjct: 2   DKPILKDSXKLFEALGTIKSRSXFGGFGLFADETXFALVVNNQLHIRADQQTSSDFETQ 60


>2o8r_A Polyphosphate kinase; structural genomics, protein structure
           initiative, PSI, nysgrc, NEW YORK structural genomics
           research consortium; HET: MSE; 2.70A {Porphyromonas
           gingivalis} (A:317-705)
          Length = 389

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 9/72 (12%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 258 IAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQ 317
              + D    R+   + +    +       + +L+  Y    D  P+       R +K +
Sbjct: 314 ACPVLDPTLRREIIDILEIQLRDNIKACRIDSSLNNIYKHNSDEKPVRAQAAIYRYLKGK 373

Query: 318 IPELP-DAKRER 328
               P   +   
Sbjct: 374 EETTPAAKEGHH 385


>1ksq_A Latent transforming growth factor beta binding protein 1;
           structure, LTBP-1, TGF-beta, TB domain, latency
           associated propeptide, LAP; NMR {Homo sapiens} (A:)
          Length = 75

 Score = 27.5 bits (61), Expect = 4.2
 Identities = 6/12 (50%), Positives = 6/12 (50%)

Query: 225 CRPGEAWGTRCE 236
           C  G  WG  CE
Sbjct: 37  CTSGAGWGDNCE 48


>2ph5_A Homospermidine synthase; alpha-beta protein, structural
           genomics, PSI-2, protein structure initiative; HET: NAD;
           2.50A {Legionella pneumophila subsp}
           (A:160-378,A:434-480)
          Length = 266

 Score = 27.4 bits (61), Expect = 4.7
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 7/42 (16%)

Query: 465 PNLVSWFVGQ----VMKNTGGKANPSIVQK---MLKEKLGIK 499
           P LVS F+ +    + K+ G   N          L   LGIK
Sbjct: 1   PGLVSHFIKEALLNIAKDNGLTINRPKNAAEWANLAXTLGIK 42


>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase;
           polymerase, translation; 3.40A {Homo sapiens}
           (A:203-282)
          Length = 80

 Score = 27.0 bits (60), Expect = 5.1
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 285 RTKEDALD----YRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEF 333
           R +ED L     +R++      P + D + + AI +    L     ER   E 
Sbjct: 2   RIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVEL 54


>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium,
           TB domain, disease mutation, extracellular matrix,
           polymorphism, cbegf domain; 1.35A {Homo sapiens}
           (A:45-94)
          Length = 50

 Score = 27.1 bits (60), Expect = 5.4
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)

Query: 207 CDGNMEEGSMRADVNVSVCRPGEAWGTRCE 236
           C   +  G  +A      C  G+AWGT CE
Sbjct: 20  CSNEIGVGVSKASC---CCSLGKAWGTPCE 46


>2qp2_A Unknown protein; toxin, unknown function; 2.00A
           {Photorhabdus luminescens subsp} (A:1-357)
          Length = 357

 Score = 26.8 bits (58), Expect = 5.7
 Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 3/42 (7%)

Query: 293 YRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFG 334
           Y   S  + L   + E    A+ K      D         +G
Sbjct: 162 YILKSSAEALKEFLKESVKTALDK-ADTEEDM--NDLFNTWG 200


>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
           magnesium, transferase, structural genomics, structural
           genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
           3eoe_A (A:1-105,A:202-373)
          Length = 277

 Score = 26.9 bits (59), Expect = 5.9
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 206 TCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILED 263
             + +     + A +NV  CR   + G          ++ +  A++     ++AIL D
Sbjct: 48  CWNVDTLVKMIDAGMNV--CRLNFSHGDHETHART--VQNIQEAMKQRPEARLAILLD 101


>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity
           clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase;
           HET: ATG ADP; 2.85A {Saccharomyces cerevisiae}
           (A:262-394)
          Length = 133

 Score = 26.7 bits (59), Expect = 6.8
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 272 RLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQ 317
           +++    +   +L  K       YF + D  PL I E+++      
Sbjct: 32  QIYSDIGSRNFTLNDKIAL----YFDDFDFTPLMIQENYLSTRPSV 73


>3ice_A Transcription termination factor RHO; transcription, ATPase,
           hexamer, helicase, RNA, RECA, OB fold, motor,
           ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A
           {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A*
           1xpr_A* 1xpu_A* 2ht1_A (A:142-422)
          Length = 281

 Score = 26.4 bits (57), Expect = 8.1
 Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 9/96 (9%)

Query: 106 PQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSC 165
               +  +    +       +  G            G     L      +    +     
Sbjct: 163 FGAARNVEEGGSLTIIATALIDTGSKXDEVIYEEFKGTGNXELHLSRKIAEKRVFP---A 219

Query: 166 IDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSIL 201
           ID NRSG    E++T  +             LR I+
Sbjct: 220 IDYNRSGTRKEELLTTQEE------LQKXWILRKII 249


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0474    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,767,046
Number of extensions: 175414
Number of successful extensions: 476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 30
Length of query: 500
Length of database: 4,956,049
Length adjustment: 92
Effective length of query: 408
Effective length of database: 1,845,989
Effective search space: 753163512
Effective search space used: 753163512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.0 bits)