RPSBLAST alignment of GI: 254780979 and SCOP domain: d1zq1c3

Alignment
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]} Length = 321
 Score =  249 bits (637), Expect = 3e-67
 Identities = 76/339 (22%), Positives = 120/339 (35%), Gaps = 65/339 (19%)

Query: 21  DWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPN--------------------------- 53
           +  + +G+E+H QL    KLFS        +                             
Sbjct: 8   ELGLKVGLEIHRQLDT-KKLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKK 66

Query: 54  -------TQVSFFDAAMPGMLPIL--NGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPD 104
                        D       P    +   ++ A+     LNA       + RK      
Sbjct: 67  GRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGS 126

Query: 105 LPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVS 164
              G+Q +                      +     VGI  I LE+DA + I  +     
Sbjct: 127 NVSGFQRTAIIATDG-------------KVETPWGAVGIPTICLEEDAARIIE-RKDKEV 172

Query: 165 CIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSV 224
              L+R G+ L+EI T PD+    +AK     +   LR        +  G++R D+NVS+
Sbjct: 173 IYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGL--GTIRQDLNVSI 230

Query: 225 CRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIR----QETRLFDPSKNE 280
                  G R E+K V  +  + + IE E  RQ+ +L+    +R    +ETR   P  N 
Sbjct: 231 K-----GGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGPEETRRALPDGN- 284

Query: 281 TRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIP 319
           T  +R        R + E D+ PL I +D  + IK+ +P
Sbjct: 285 TEYMRPLPG--KARMYPETDIPPLRIPDDLKKKIKENLP 321

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: GatB/GatE catalytic domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE
species: Pyrococcus abyssi [TaxId: 29292]