BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus Liberibacter asiaticus str. psy62] (500 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 500 Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/500 (100%), Positives = 500/500 (100%) Query: 1 MVSLDTHVARSESLTSGTTGDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFD 60 MVSLDTHVARSESLTSGTTGDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFD Sbjct: 1 MVSLDTHVARSESLTSGTTGDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFD 60 Query: 61 AAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVG 120 AAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVG Sbjct: 61 AAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVG 120 Query: 121 EGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVT 180 EGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVT Sbjct: 121 EGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVT 180 Query: 181 KPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNV 240 KPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNV Sbjct: 181 KPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNV 240 Query: 241 NSIRFLGLAIEYEARRQIAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPD 300 NSIRFLGLAIEYEARRQIAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPD Sbjct: 241 NSIRFLGLAIEYEARRQIAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPD 300 Query: 301 LLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNR 360 LLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNR Sbjct: 301 LLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNR 360 Query: 361 DKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWE 420 DKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWE Sbjct: 361 DKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWE 420 Query: 421 KGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTG 480 KGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTG Sbjct: 421 KGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTG 480 Query: 481 GKANPSIVQKMLKEKLGIKE 500 GKANPSIVQKMLKEKLGIKE Sbjct: 481 GKANPSIVQKMLKEKLGIKE 500 >gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62] Length = 404 Score = 24.6 bits (52), Expect = 3.8, Method: Compositional matrix adjust. Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 300 DLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYF 353 DL P ++ + I++ + L + ++IG+ I + +L+S+KS+ D+F Sbjct: 345 DLFPYKLRKGAFE-IQRTVSRLYEMFSAQYIGKNKIIIDACKILLSNKSVNDFF 397 >gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 24.6 bits (52), Expect = 4.3, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 269 QETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFI 311 ++TR F + +S+ T+ D LDY F E LE+D+ + Sbjct: 3 KKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQ---LEVDKTMV 42 >gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter asiaticus str. psy62] Length = 699 Score = 24.3 bits (51), Expect = 4.8, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Query: 245 FLGLAIEYEARRQIAILEDGGHIRQETRLFDPSKNE 280 F L + Y+ R GG++R+E+R P++NE Sbjct: 56 FFPLTVNYQERTYAVGKIPGGYLRRESR---PTENE 88 >gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 23.9 bits (50), Expect = 6.4, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 18/39 (46%) Query: 208 DGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNVNSIRFL 246 DGNMEE S D V V ++ + N N++R Sbjct: 41 DGNMEELSPERDFKVDVDESSLILSSKRWINNNNALRIF 79 >gi|254780467|ref|YP_003064880.1| exodeoxyribonuclease VII small subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 86 Score = 23.9 bits (50), Expect = 6.9, Method: Compositional matrix adjust. Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 209 GNMEEGSMRADVNVSVCRPGEAWGTRCE 236 +E G + D ++S+ GEA + CE Sbjct: 28 AKLERGDVTLDESISIYERGEALKSHCE 55 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.136 0.387 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 325,092 Number of Sequences: 1233 Number of extensions: 13848 Number of successful extensions: 38 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 11 length of query: 500 length of database: 328,796 effective HSP length: 78 effective length of query: 422 effective length of database: 232,622 effective search space: 98166484 effective search space used: 98166484 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 40 (20.0 bits)