BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA
amidotransferase subunit B [Candidatus Liberibacter asiaticus str.
psy62]
         (500 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 500

 Score = 1025 bits (2650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/500 (100%), Positives = 500/500 (100%)

Query: 1   MVSLDTHVARSESLTSGTTGDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFD 60
           MVSLDTHVARSESLTSGTTGDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFD
Sbjct: 1   MVSLDTHVARSESLTSGTTGDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFD 60

Query: 61  AAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVG 120
           AAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVG
Sbjct: 61  AAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVG 120

Query: 121 EGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVT 180
           EGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVT
Sbjct: 121 EGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVT 180

Query: 181 KPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNV 240
           KPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNV
Sbjct: 181 KPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNV 240

Query: 241 NSIRFLGLAIEYEARRQIAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPD 300
           NSIRFLGLAIEYEARRQIAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPD
Sbjct: 241 NSIRFLGLAIEYEARRQIAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPD 300

Query: 301 LLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNR 360
           LLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNR
Sbjct: 301 LLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNR 360

Query: 361 DKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWE 420
           DKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWE
Sbjct: 361 DKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWE 420

Query: 421 KGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTG 480
           KGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTG
Sbjct: 421 KGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTG 480

Query: 481 GKANPSIVQKMLKEKLGIKE 500
           GKANPSIVQKMLKEKLGIKE
Sbjct: 481 GKANPSIVQKMLKEKLGIKE 500


>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 404

 Score = 24.6 bits (52), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 300 DLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYF 353
           DL P ++ +     I++ +  L +    ++IG+  I +    +L+S+KS+ D+F
Sbjct: 345 DLFPYKLRKGAFE-IQRTVSRLYEMFSAQYIGKNKIIIDACKILLSNKSVNDFF 397


>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 805

 Score = 24.6 bits (52), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 269 QETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFI 311
           ++TR F    +  +S+ T+ D LDY  F E     LE+D+  +
Sbjct: 3   KKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQ---LEVDKTMV 42


>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 699

 Score = 24.3 bits (51), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 245 FLGLAIEYEARRQIAILEDGGHIRQETRLFDPSKNE 280
           F  L + Y+ R        GG++R+E+R   P++NE
Sbjct: 56  FFPLTVNYQERTYAVGKIPGGYLRRESR---PTENE 88


>gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 23.9 bits (50), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 208 DGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNVNSIRFL 246
           DGNMEE S   D  V V        ++  + N N++R  
Sbjct: 41  DGNMEELSPERDFKVDVDESSLILSSKRWINNNNALRIF 79


>gi|254780467|ref|YP_003064880.1| exodeoxyribonuclease VII small subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 86

 Score = 23.9 bits (50), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 209 GNMEEGSMRADVNVSVCRPGEAWGTRCE 236
             +E G +  D ++S+   GEA  + CE
Sbjct: 28  AKLERGDVTLDESISIYERGEALKSHCE 55


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.136    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 325,092
Number of Sequences: 1233
Number of extensions: 13848
Number of successful extensions: 38
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 11
length of query: 500
length of database: 328,796
effective HSP length: 78
effective length of query: 422
effective length of database: 232,622
effective search space: 98166484
effective search space used: 98166484
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 40 (20.0 bits)