Query gi|254780980|ref|YP_003065393.1| hypothetical protein CLIBASIA_04405 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 121 No_of_seqs 2 out of 4 Neff 1.4 Searched_HMMs 23785 Date Tue May 31 22:57:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780980.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3kp1_E D-ornithine aminomutase 63.8 2.5 0.00011 22.1 1.7 33 66-98 2-34 (121) 2 3e7k_A TRPM7 channel; coiled-c 41.3 20 0.00085 16.6 3.4 26 53-78 3-28 (56) 3 3f09_A Holo-[acyl-carrier-prot 29.9 19 0.00081 16.7 1.7 16 19-34 29-45 (143) 4 1yku_A Hypothetical protein PX 25.8 36 0.0015 15.0 3.6 42 22-63 26-77 (136) 5 1wpb_A Hypothetical protein YF 24.1 26 0.0011 15.9 1.5 62 41-105 2-74 (172) 6 1o0y_A Deoxyribose-phosphate a 16.7 57 0.0024 13.9 4.0 66 53-120 10-81 (260) 7 2kk9_A M protein, serotype 5; 16.0 33 0.0014 15.3 0.6 34 51-84 7-41 (56) 8 1zxg_A Immunoglobulin G bindin 14.7 41 0.0017 14.7 0.8 28 81-108 4-37 (59) 9 2ogf_A Hypothetical protein MJ 14.4 41 0.0017 14.7 0.7 21 87-107 11-31 (122) 10 1fth_A ACPS, acyl carrier prot 12.6 73 0.0031 13.2 2.0 18 19-36 7-25 (122) No 1 >3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E* Probab=63.82 E-value=2.5 Score=22.09 Aligned_cols=33 Identities=27% Similarity=0.568 Sum_probs=24.9 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHH Q ss_conf 999999986544306789999999836680103 Q gi|254780980|r 66 KRVKEVEERATASRKLSVDELANAFWDLSDEDK 98 (121) Q Consensus 66 kRVKE~EE~a~A~r~L~~DeL~~~F~~L~~e~k 98 (121) +|+..-|+|+.--..|+-++|-+|||.|-.+-- T Consensus 2 kR~DDFe~RrkhL~~ltdeeL~~rFW~LaekiV 34 (121) T 3kp1_E 2 KRADDFQQRRAHLANLSDEELQTRFWEMAEKIV 34 (121) T ss_dssp ----CHHHHTGGGTTCCHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 643789999999986789999999999999987 No 2 >3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, membrane protein; 2.01A {Rattus norvegicus} Probab=41.31 E-value=20 Score=16.60 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=22.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88889999999999999999865443 Q gi|254780980|r 53 THRLAQERVEAAEKRVKEVEERATAS 78 (121) Q Consensus 53 ~HrLAqE~VE~A~kRVKE~EE~a~A~ 78 (121) ..|...||||.--++++|+.|+-+.- T Consensus 3 ~~rvTsERVE~M~~~leeVneke~~i 28 (56) T 3e7k_A 3 GSRVTFERVEQMSIQIKEVGDRVNYI 28 (56) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 86104999999999999997899999 No 3 >3f09_A Holo-[acyl-carrier-protein] synthase; structural genomics, infectious deseases, cytoplasm, fatty acid biosynthesis, lipid synthesis; 1.82A {Staphylococcus aureus subsp} Probab=29.86 E-value=19 Score=16.73 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=8.5 Q ss_pred HHHHHE-EECCHHHHHH Q ss_conf 410111-2030467876 Q gi|254780980|r 19 GGCDIV-IGRTEDLLNK 34 (121) Q Consensus 19 ~GC~iV-igrtEDllNk 34 (121) +|+||| |.|-+.++++ T Consensus 29 IGiDIv~i~Ri~~ll~~ 45 (143) T 3f09_A 29 IGVDLIEIDRIQALYSK 45 (143) T ss_dssp EEEEEEEHHHHHHHHHT T ss_pred EEEEEEEHHHHHHHHHH T ss_conf 80670067999999870 No 4 >1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis} Probab=25.82 E-value=36 Score=15.04 Aligned_cols=42 Identities=17% Similarity=0.415 Sum_probs=25.6 Q ss_pred HHEEECCHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH Q ss_conf 111203046787654567899998647789----------988889999999 Q gi|254780980|r 22 DIVIGRTEDLLNKLQKNSTQMIKEANFKIS----------ETHRLAQERVEA 63 (121) Q Consensus 22 ~iVigrtEDllNklqknS~~MiKEA~~~i~----------E~HrLAqE~VE~ 63 (121) .++|.-+.-.-..+..|..+|..--.+-++ .+-|.|+||+|+ T Consensus 26 ~i~isd~D~yk~~V~~NG~~m~~lv~~~l~~~~~~~~ie~la~KiA~ER~eA 77 (136) T 1yku_A 26 KVIIRERDPYKEEIIKNGEHLLSAFIMYLKEEISLQEIEITSKKIARERIDA 77 (136) T ss_dssp TSCCCTTCTTHHHHHHHHHHHHHHHHHHHTTSSCGGGGHHHHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC T ss_conf 4010678806999998199999999999734577899999999999998651 No 5 >1wpb_A Hypothetical protein YFBU; structural genomics, MCSG, NCS, regulatory protein, protein structure initiative, PSI; 2.00A {Escherichia coli} SCOP: a.233.1.1 Probab=24.09 E-value=26 Score=15.93 Aligned_cols=62 Identities=26% Similarity=0.462 Sum_probs=36.9 Q ss_pred HHHHHHHHHHHHHHHHHHH---HH------HHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 9999864778998888999---99------9999--9999999865443067899999998366801034544347 Q gi|254780980|r 41 QMIKEANFKISETHRLAQE---RV------EAAE--KRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNV 105 (121) Q Consensus 41 ~MiKEA~~~i~E~HrLAqE---~V------E~A~--kRVKE~EE~a~A~r~L~~DeL~~~F~~L~~e~k~~F~~~v 105 (121) .||+|.-|+.+.+-||.-- +. +.|+ +|..++-|+. -++-+++|-+-|.+|+.++-.+.+|.. T Consensus 2 ~~~~e~~M~mt~~eRLiL~nq~~il~~L~pena~~y~~~~~ile~G---y~~~~~el~~~~~~lsee~c~~ViDiL 74 (172) T 1wpb_A 2 HMIQESTMEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERG---YGLQMRELDREFGELKEETCRTIIDIM 74 (172) T ss_dssp ---CCCGGGCCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHT---CHHHHHHHHTTCCCCCHHHHHHHHHHH T ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC---HHHHHHHHHCCCCCCCHHHHHHHHHHH T ss_conf 4325776123799999999799999860953210399999999745---087999874415667688999999999 No 6 >1o0y_A Deoxyribose-phosphate aldolase; TM1559, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: c.1.10.1 Probab=16.69 E-value=57 Score=13.86 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=41.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH------CCCCCHHHHHHHHHHHHHHHHEEEECCCC Q ss_conf 888899999999999999998654430678999999983------66801034544347875432102211799 Q gi|254780980|r 53 THRLAQERVEAAEKRVKEVEERATASRKLSVDELANAFW------DLSDEDKNAFTGNVKQEVCKVKKITVPPS 120 (121) Q Consensus 53 ~HrLAqE~VE~A~kRVKE~EE~a~A~r~L~~DeL~~~F~------~L~~e~k~~F~~~vk~~vckvkkitvpps 120 (121) .|.+-.+++|++-.|.++..|-.+-+...++.+|+++.= +.+.++-..+.+...+ ..+.-+.|||+ T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ID~TlL~p~~T~~~i~~~c~~A~~--~~~~aVCV~P~ 81 (260) T 1o0y_A 10 HHHMIEYRIEEAVAKYREFYEFKPVRESAGIEDVKSAIEHTNLKPFATPDDIKKLCLEARE--NRFHGVCVNPC 81 (260) T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSSCCCHHHHHHHEEEEECCTTCCHHHHHHHHHHHHH--HTCSEEEECGG T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEECHH T ss_conf 8999999999999986640454015667539999976152479988999999999999852--59828998999 No 7 >2kk9_A M protein, serotype 5; S. pyogenes, synthetic peptide vaccine, cell WAL coil, peptidoglycan-anchor, phagocytosis, secreted, virulen unknown function; NMR {Synthetic} Probab=16.03 E-value=33 Score=15.28 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHH Q ss_conf 9988889999999999999999865443-067899 Q gi|254780980|r 51 SETHRLAQERVEAAEKRVKEVEERATAS-RKLSVD 84 (121) Q Consensus 51 ~E~HrLAqE~VE~A~kRVKE~EE~a~A~-r~L~~D 84 (121) +|+-|-|+.-+|+..+.++|-..-+.|| +||+-| T Consensus 7 Leasr~aKk~leae~~Kl~e~~qIseasR~gl~RD 41 (56) T 2kk9_A 7 LDASREAKKQLEAEQQKLEEQNKISEASRKGLRRD 41 (56) T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHHHHHCSSSSSSS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99889889987999999999878679999988721 No 8 >1zxg_A Immunoglobulin G binding protein A; IGG-binding, phage display, immune system/protein binding complex; NMR {Staphylococcus aureus} Probab=14.71 E-value=41 Score=14.74 Aligned_cols=28 Identities=36% Similarity=0.744 Sum_probs=21.3 Q ss_pred CCHHHHHHHHH------CCCCCHHHHHHHHHHHH Q ss_conf 78999999983------66801034544347875 Q gi|254780980|r 81 LSVDELANAFW------DLSDEDKNAFTGNVKQE 108 (121) Q Consensus 81 L~~DeL~~~F~------~L~~e~k~~F~~~vk~~ 108 (121) |-|++--|+|| ||..+-.|+||...+.. T Consensus 4 lvvn~qqnAfyEil~lpnl~e~qrn~FIqSLkDD 37 (59) T 1zxg_A 4 LVVNKQQNAFYEVLNMPNLNEDQRNAFIQSLKDD 37 (59) T ss_dssp SCCSSHHHHHHHHHCSTTCCSSHHHHHHHHHHHC T ss_pred EEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCC T ss_conf 9970433079999866557889998899874348 No 9 >2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, protein structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii} Probab=14.36 E-value=41 Score=14.69 Aligned_cols=21 Identities=24% Similarity=0.560 Sum_probs=17.2 Q ss_pred HHHHHCCCCCHHHHHHHHHHH Q ss_conf 999836680103454434787 Q gi|254780980|r 87 ANAFWDLSDEDKNAFTGNVKQ 107 (121) Q Consensus 87 ~~~F~~L~~e~k~~F~~~vk~ 107 (121) -.||-|++|.+++.|-+.|+- T Consensus 11 ~kYF~n~TdrerA~FEaGIkl 31 (122) T 2ogf_A 11 KKYFKNLTDRERAVFEGGITL 31 (122) T ss_dssp HHTTTTSCHHHHHHHHHHHHH T ss_pred HHHHCCCCHHHHHHHHHHHHH T ss_conf 987444886998888641223 No 10 >1fth_A ACPS, acyl carrier protein synthase; bacterial fatty acid biosynthesis, acyl carrier synthase, coenzyme A, X-RAY crystallography; HET: A3P; 1.90A {Streptococcus pneumoniae} SCOP: d.150.1.2 PDB: 1fte_A 1ftf_A* Probab=12.60 E-value=73 Score=13.18 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=10.5 Q ss_pred HHHHHE-EECCHHHHHHHH Q ss_conf 410111-203046787654 Q gi|254780980|r 19 GGCDIV-IGRTEDLLNKLQ 36 (121) Q Consensus 19 ~GC~iV-igrtEDllNklq 36 (121) +||||| |.|-+.++.+-+ T Consensus 7 iGiDiv~i~Ri~~~l~~~~ 25 (122) T 1fth_A 7 HGIDIEELASIESAVTRHE 25 (122) T ss_dssp EEEEEEEHHHHHHHHHTTS T ss_pred EEEEEEEHHHHHHHHHHCH T ss_conf 8275458699999998776 Done!