Query         gi|254780980|ref|YP_003065393.1| hypothetical protein CLIBASIA_04405 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 121
No_of_seqs    2 out of 4
Neff          1.4 
Searched_HMMs 23785
Date          Tue May 31 22:57:14 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780980.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3kp1_E D-ornithine aminomutase  63.8     2.5 0.00011   22.1   1.7   33   66-98      2-34  (121)
  2 3e7k_A TRPM7 channel; coiled-c  41.3      20 0.00085   16.6   3.4   26   53-78      3-28  (56)
  3 3f09_A Holo-[acyl-carrier-prot  29.9      19 0.00081   16.7   1.7   16   19-34     29-45  (143)
  4 1yku_A Hypothetical protein PX  25.8      36  0.0015   15.0   3.6   42   22-63     26-77  (136)
  5 1wpb_A Hypothetical protein YF  24.1      26  0.0011   15.9   1.5   62   41-105     2-74  (172)
  6 1o0y_A Deoxyribose-phosphate a  16.7      57  0.0024   13.9   4.0   66   53-120    10-81  (260)
  7 2kk9_A M protein, serotype 5;   16.0      33  0.0014   15.3   0.6   34   51-84      7-41  (56)
  8 1zxg_A Immunoglobulin G bindin  14.7      41  0.0017   14.7   0.8   28   81-108     4-37  (59)
  9 2ogf_A Hypothetical protein MJ  14.4      41  0.0017   14.7   0.7   21   87-107    11-31  (122)
 10 1fth_A ACPS, acyl carrier prot  12.6      73  0.0031   13.2   2.0   18   19-36      7-25  (122)

No 1  
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=63.82  E-value=2.5  Score=22.09  Aligned_cols=33  Identities=27%  Similarity=0.568  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHH
Q ss_conf             999999986544306789999999836680103
Q gi|254780980|r   66 KRVKEVEERATASRKLSVDELANAFWDLSDEDK   98 (121)
Q Consensus        66 kRVKE~EE~a~A~r~L~~DeL~~~F~~L~~e~k   98 (121)
                      +|+..-|+|+.--..|+-++|-+|||.|-.+--
T Consensus         2 kR~DDFe~RrkhL~~ltdeeL~~rFW~LaekiV   34 (121)
T 3kp1_E            2 KRADDFQQRRAHLANLSDEELQTRFWEMAEKIV   34 (121)
T ss_dssp             ----CHHHHTGGGTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             643789999999986789999999999999987


No 2  
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, membrane protein; 2.01A {Rattus norvegicus}
Probab=41.31  E-value=20  Score=16.60  Aligned_cols=26  Identities=35%  Similarity=0.433  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88889999999999999999865443
Q gi|254780980|r   53 THRLAQERVEAAEKRVKEVEERATAS   78 (121)
Q Consensus        53 ~HrLAqE~VE~A~kRVKE~EE~a~A~   78 (121)
                      ..|...||||.--++++|+.|+-+.-
T Consensus         3 ~~rvTsERVE~M~~~leeVneke~~i   28 (56)
T 3e7k_A            3 GSRVTFERVEQMSIQIKEVGDRVNYI   28 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             86104999999999999997899999


No 3  
>3f09_A Holo-[acyl-carrier-protein] synthase; structural genomics, infectious deseases, cytoplasm, fatty acid biosynthesis, lipid synthesis; 1.82A {Staphylococcus aureus subsp}
Probab=29.86  E-value=19  Score=16.73  Aligned_cols=16  Identities=38%  Similarity=0.634  Sum_probs=8.5

Q ss_pred             HHHHHE-EECCHHHHHH
Q ss_conf             410111-2030467876
Q gi|254780980|r   19 GGCDIV-IGRTEDLLNK   34 (121)
Q Consensus        19 ~GC~iV-igrtEDllNk   34 (121)
                      +|+||| |.|-+.++++
T Consensus        29 IGiDIv~i~Ri~~ll~~   45 (143)
T 3f09_A           29 IGVDLIEIDRIQALYSK   45 (143)
T ss_dssp             EEEEEEEHHHHHHHHHT
T ss_pred             EEEEEEEHHHHHHHHHH
T ss_conf             80670067999999870


No 4  
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis}
Probab=25.82  E-value=36  Score=15.04  Aligned_cols=42  Identities=17%  Similarity=0.415  Sum_probs=25.6

Q ss_pred             HHEEECCHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Q ss_conf             111203046787654567899998647789----------988889999999
Q gi|254780980|r   22 DIVIGRTEDLLNKLQKNSTQMIKEANFKIS----------ETHRLAQERVEA   63 (121)
Q Consensus        22 ~iVigrtEDllNklqknS~~MiKEA~~~i~----------E~HrLAqE~VE~   63 (121)
                      .++|.-+.-.-..+..|..+|..--.+-++          .+-|.|+||+|+
T Consensus        26 ~i~isd~D~yk~~V~~NG~~m~~lv~~~l~~~~~~~~ie~la~KiA~ER~eA   77 (136)
T 1yku_A           26 KVIIRERDPYKEEIIKNGEHLLSAFIMYLKEEISLQEIEITSKKIARERIDA   77 (136)
T ss_dssp             TSCCCTTCTTHHHHHHHHHHHHHHHHHHHTTSSCGGGGHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             4010678806999998199999999999734577899999999999998651


No 5  
>1wpb_A Hypothetical protein YFBU; structural genomics, MCSG, NCS, regulatory protein, protein structure initiative, PSI; 2.00A {Escherichia coli} SCOP: a.233.1.1
Probab=24.09  E-value=26  Score=15.93  Aligned_cols=62  Identities=26%  Similarity=0.462  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HH------HHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             9999864778998888999---99------9999--9999999865443067899999998366801034544347
Q gi|254780980|r   41 QMIKEANFKISETHRLAQE---RV------EAAE--KRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNV  105 (121)
Q Consensus        41 ~MiKEA~~~i~E~HrLAqE---~V------E~A~--kRVKE~EE~a~A~r~L~~DeL~~~F~~L~~e~k~~F~~~v  105 (121)
                      .||+|.-|+.+.+-||.--   +.      +.|+  +|..++-|+.   -++-+++|-+-|.+|+.++-.+.+|..
T Consensus         2 ~~~~e~~M~mt~~eRLiL~nq~~il~~L~pena~~y~~~~~ile~G---y~~~~~el~~~~~~lsee~c~~ViDiL   74 (172)
T 1wpb_A            2 HMIQESTMEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERG---YGLQMRELDREFGELKEETCRTIIDIM   74 (172)
T ss_dssp             ---CCCGGGCCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHT---CHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC---HHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             4325776123799999999799999860953210399999999745---087999874415667688999999999


No 6  
>1o0y_A Deoxyribose-phosphate aldolase; TM1559, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: c.1.10.1
Probab=16.69  E-value=57  Score=13.86  Aligned_cols=66  Identities=15%  Similarity=0.256  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH------CCCCCHHHHHHHHHHHHHHHHEEEECCCC
Q ss_conf             888899999999999999998654430678999999983------66801034544347875432102211799
Q gi|254780980|r   53 THRLAQERVEAAEKRVKEVEERATASRKLSVDELANAFW------DLSDEDKNAFTGNVKQEVCKVKKITVPPS  120 (121)
Q Consensus        53 ~HrLAqE~VE~A~kRVKE~EE~a~A~r~L~~DeL~~~F~------~L~~e~k~~F~~~vk~~vckvkkitvpps  120 (121)
                      .|.+-.+++|++-.|.++..|-.+-+...++.+|+++.=      +.+.++-..+.+...+  ..+.-+.|||+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ID~TlL~p~~T~~~i~~~c~~A~~--~~~~aVCV~P~   81 (260)
T 1o0y_A           10 HHHMIEYRIEEAVAKYREFYEFKPVRESAGIEDVKSAIEHTNLKPFATPDDIKKLCLEARE--NRFHGVCVNPC   81 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCCSSSCCCHHHHHHHEEEEECCTTCCHHHHHHHHHHHHH--HTCSEEEECGG
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEECHH
T ss_conf             8999999999999986640454015667539999976152479988999999999999852--59828998999


No 7  
>2kk9_A M protein, serotype 5; S. pyogenes, synthetic peptide vaccine, cell WAL coil, peptidoglycan-anchor, phagocytosis, secreted, virulen unknown function; NMR {Synthetic}
Probab=16.03  E-value=33  Score=15.28  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHH
Q ss_conf             9988889999999999999999865443-067899
Q gi|254780980|r   51 SETHRLAQERVEAAEKRVKEVEERATAS-RKLSVD   84 (121)
Q Consensus        51 ~E~HrLAqE~VE~A~kRVKE~EE~a~A~-r~L~~D   84 (121)
                      +|+-|-|+.-+|+..+.++|-..-+.|| +||+-|
T Consensus         7 Leasr~aKk~leae~~Kl~e~~qIseasR~gl~RD   41 (56)
T 2kk9_A            7 LDASREAKKQLEAEQQKLEEQNKISEASRKGLRRD   41 (56)
T ss_dssp             SSCCSHHHHHHHHHHHHHHHHHHHHHHCSSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99889889987999999999878679999988721


No 8  
>1zxg_A Immunoglobulin G binding protein A; IGG-binding, phage display, immune system/protein binding complex; NMR {Staphylococcus aureus}
Probab=14.71  E-value=41  Score=14.74  Aligned_cols=28  Identities=36%  Similarity=0.744  Sum_probs=21.3

Q ss_pred             CCHHHHHHHHH------CCCCCHHHHHHHHHHHH
Q ss_conf             78999999983------66801034544347875
Q gi|254780980|r   81 LSVDELANAFW------DLSDEDKNAFTGNVKQE  108 (121)
Q Consensus        81 L~~DeL~~~F~------~L~~e~k~~F~~~vk~~  108 (121)
                      |-|++--|+||      ||..+-.|+||...+..
T Consensus         4 lvvn~qqnAfyEil~lpnl~e~qrn~FIqSLkDD   37 (59)
T 1zxg_A            4 LVVNKQQNAFYEVLNMPNLNEDQRNAFIQSLKDD   37 (59)
T ss_dssp             SCCSSHHHHHHHHHCSTTCCSSHHHHHHHHHHHC
T ss_pred             EEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf             9970433079999866557889998899874348


No 9  
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, protein structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=14.36  E-value=41  Score=14.69  Aligned_cols=21  Identities=24%  Similarity=0.560  Sum_probs=17.2

Q ss_pred             HHHHHCCCCCHHHHHHHHHHH
Q ss_conf             999836680103454434787
Q gi|254780980|r   87 ANAFWDLSDEDKNAFTGNVKQ  107 (121)
Q Consensus        87 ~~~F~~L~~e~k~~F~~~vk~  107 (121)
                      -.||-|++|.+++.|-+.|+-
T Consensus        11 ~kYF~n~TdrerA~FEaGIkl   31 (122)
T 2ogf_A           11 KKYFKNLTDRERAVFEGGITL   31 (122)
T ss_dssp             HHTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHH
T ss_conf             987444886998888641223


No 10 
>1fth_A ACPS, acyl carrier protein synthase; bacterial fatty acid biosynthesis, acyl carrier synthase, coenzyme A, X-RAY crystallography; HET: A3P; 1.90A {Streptococcus pneumoniae} SCOP: d.150.1.2 PDB: 1fte_A 1ftf_A*
Probab=12.60  E-value=73  Score=13.18  Aligned_cols=18  Identities=22%  Similarity=0.392  Sum_probs=10.5

Q ss_pred             HHHHHE-EECCHHHHHHHH
Q ss_conf             410111-203046787654
Q gi|254780980|r   19 GGCDIV-IGRTEDLLNKLQ   36 (121)
Q Consensus        19 ~GC~iV-igrtEDllNklq   36 (121)
                      +||||| |.|-+.++.+-+
T Consensus         7 iGiDiv~i~Ri~~~l~~~~   25 (122)
T 1fth_A            7 HGIDIEELASIESAVTRHE   25 (122)
T ss_dssp             EEEEEEEHHHHHHHHHTTS
T ss_pred             EEEEEEEHHHHHHHHHHCH
T ss_conf             8275458699999998776


Done!