Query gi|254780980|ref|YP_003065393.1| hypothetical protein CLIBASIA_04405 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 121 No_of_seqs 2 out of 4 Neff 1.4 Searched_HMMs 13730 Date Wed Jun 1 10:57:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780980.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1ddba_ f.1.4.1 (A:) Proapopto 14.7 37 0.0027 13.6 2.9 31 79-109 102-134 (195) 2 d1x4pa1 a.217.1.1 (A:8-60) Arg 12.7 21 0.0015 15.1 0.0 14 88-101 28-41 (53) 3 d1a6qa1 a.159.1.1 (A:297-368) 11.8 45 0.0033 13.0 1.9 51 56-110 8-70 (72) 4 d1ftha_ d.150.1.2 (A:) Holo-(a 11.3 47 0.0034 12.9 2.0 18 19-36 5-23 (117) 5 d1lp1a_ a.8.1.1 (A:) Immunoglo 9.5 54 0.0039 12.5 2.3 25 84-108 4-34 (55) 6 d1fc2c_ a.8.1.1 (C:) Immunoglo 9.0 57 0.0041 12.4 1.6 25 85-109 4-34 (44) 7 d1dgfa_ e.5.1.1 (A:) Catalase 8.3 61 0.0044 12.2 1.8 29 85-113 437-467 (497) 8 d2bida_ f.1.4.1 (A:) Proapopto 8.3 61 0.0044 12.2 1.9 31 79-109 104-136 (197) 9 d1hv8a1 c.37.1.19 (A:3-210) Pu 7.4 9.9 0.00072 17.0 -3.2 40 18-57 119-158 (208) 10 d2c0sa1 a.30.7.1 (A:1-57) Hypo 6.5 53 0.0039 12.6 0.1 17 83-99 38-54 (57) No 1 >d1ddba_ f.1.4.1 (A:) Proapoptotic molecule Bid {Mouse (Mus musculus) [TaxId: 10090]} Probab=14.70 E-value=37 Score=13.55 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=21.6 Q ss_pred HCCCHHHHHHHHH--CCCCCHHHHHHHHHHHHH Q ss_conf 0678999999983--668010345443478754 Q gi|254780980|r 79 RKLSVDELANAFW--DLSDEDKNAFTGNVKQEV 109 (121) Q Consensus 79 r~L~~DeL~~~F~--~L~~e~k~~F~~~vk~~v 109 (121) +---|+.|+..|+ +|+.|++.-.....-+++ T Consensus 102 ~p~~V~~La~~f~N~sLseEd~~~~Laa~ve~l 134 (195) T d1ddba_ 102 QPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEV 134 (195) T ss_dssp CSSSHHHHHHHHCCSSSSSSSTTHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 689999999999864535899999999999999 No 2 >d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]} Probab=12.70 E-value=21 Score=15.07 Aligned_cols=14 Identities=43% Similarity=0.838 Sum_probs=10.1 Q ss_pred HHHHCCCCCHHHHH Q ss_conf 99836680103454 Q gi|254780980|r 88 NAFWDLSDEDKNAF 101 (121) Q Consensus 88 ~~F~~L~~e~k~~F 101 (121) -+||-|||+|---| T Consensus 28 P~yWFLsde~SlEy 41 (53) T d1x4pa1 28 PAYWFLSDENSLEY 41 (53) T ss_dssp GGGCTTTCCSSSHH T ss_pred CCEEEEECCCCHHH T ss_conf 87388606640147 No 3 >d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=11.79 E-value=45 Score=13.03 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCH------------HHHHHHHHHHHHH Q ss_conf 899999999999999998654430678999999983668010------------3454434787543 Q gi|254780980|r 56 LAQERVEAAEKRVKEVEERATASRKLSVDELANAFWDLSDED------------KNAFTGNVKQEVC 110 (121) Q Consensus 56 LAqE~VE~A~kRVKE~EE~a~A~r~L~~DeL~~~F~~L~~e~------------k~~F~~~vk~~vc 110 (121) --+|--..-++||+|.-+++ +-++.||.--|..|.++| |..+|-.+-++.| T Consensus 8 kE~eLd~~Le~~v~eii~~~----~~~~~dl~~Vm~~L~~e~Ip~LPPGGGL~sK~~~IE~vy~~l~ 70 (72) T d1a6qa1 8 KEAELDKYLECRVEEIIKKQ----GEGVPDLVHVMRTLASENIPSLPPGGELASKRNVIEAVYNRLN 70 (72) T ss_dssp HHHHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHTTCSSCCTTTGGGGGHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC T ss_conf 89999999999999999876----5577109999999986689999999659999999999999768 No 4 >d1ftha_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Streptococcus pneumoniae [TaxId: 1313]} Probab=11.27 E-value=47 Score=12.93 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=10.6 Q ss_pred HHHHHE-EECCHHHHHHHH Q ss_conf 410111-203046787654 Q gi|254780980|r 19 GGCDIV-IGRTEDLLNKLQ 36 (121) Q Consensus 19 ~GC~iV-igrtEDllNklq 36 (121) +||||| |-|-+.++++.+ T Consensus 5 IG~Div~i~Ri~~~l~~~~ 23 (117) T d1ftha_ 5 HGIDIEELASIESAVTRHE 23 (117) T ss_dssp EEEEEEEHHHHHHHHHTTS T ss_pred EEEEEEEHHHHHHHHHHCH T ss_conf 9887768599999998776 No 5 >d1lp1a_ a.8.1.1 (A:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]} Probab=9.54 E-value=54 Score=12.55 Aligned_cols=25 Identities=32% Similarity=0.338 Sum_probs=17.0 Q ss_pred HHHHHHHH------CCCCCHHHHHHHHHHHH Q ss_conf 99999983------66801034544347875 Q gi|254780980|r 84 DELANAFW------DLSDEDKNAFTGNVKQE 108 (121) Q Consensus 84 DeL~~~F~------~L~~e~k~~F~~~vk~~ 108 (121) +|+.++|| ||..+..++||...+.. T Consensus 4 ke~~~Af~ei~~lPNLn~~Qrn~fIqSLkDD 34 (55) T d1lp1a_ 4 KELSVAGREIVTLPNLNDPQKKAFIFSLWDD 34 (55) T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC T ss_conf 8999989999828889989998899884138 No 6 >d1fc2c_ a.8.1.1 (C:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]} Probab=8.95 E-value=57 Score=12.41 Aligned_cols=25 Identities=36% Similarity=0.713 Sum_probs=18.1 Q ss_pred HHHHHHH------CCCCCHHHHHHHHHHHHH Q ss_conf 9999983------668010345443478754 Q gi|254780980|r 85 ELANAFW------DLSDEDKNAFTGNVKQEV 109 (121) Q Consensus 85 eL~~~F~------~L~~e~k~~F~~~vk~~v 109 (121) +..++|| ||..+..++||..++..- T Consensus 4 eqq~Af~Eil~lPNLne~Qrn~fI~SLkDDP 34 (44) T d1fc2c_ 4 EQQNAFYEILHLPNLNEEQRNGFIQSLKDDP 34 (44) T ss_dssp SHHHHHHHHHTCSSSCTHHHHHHHHHHHHCT T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC T ss_conf 9999999998388899899988888712480 No 7 >d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId: 9606]} Probab=8.31 E-value=61 Score=12.24 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=20.5 Q ss_pred HHHHHHH-C-CCCCHHHHHHHHHHHHHHHHE Q ss_conf 9999983-6-680103454434787543210 Q gi|254780980|r 85 ELANAFW-D-LSDEDKNAFTGNVKQEVCKVK 113 (121) Q Consensus 85 eL~~~F~-~-L~~e~k~~F~~~vk~~vckvk 113 (121) .-++.|| . ++++.|.-++.|+-..+..|+ T Consensus 437 ~Q~~~~~~~~~~~~~~~~l~~n~~~~l~~~~ 467 (497) T d1dgfa_ 437 TQVRAFYVNVLNEEQRKRLCENIAGHLKDAQ 467 (497) T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHTTSC T ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHHHHCCC T ss_conf 2316888873999999999999999860899 No 8 >d2bida_ f.1.4.1 (A:) Proapoptotic molecule Bid {Human (Homo sapiens) [TaxId: 9606]} Probab=8.28 E-value=61 Score=12.23 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=20.0 Q ss_pred HCCCHHHHHHHHHC--CCCCHHHHHHHHHHHHH Q ss_conf 06789999999836--68010345443478754 Q gi|254780980|r 79 RKLSVDELANAFWD--LSDEDKNAFTGNVKQEV 109 (121) Q Consensus 79 r~L~~DeL~~~F~~--L~~e~k~~F~~~vk~~v 109 (121) +---|++||..|+| ||.||+.-.....-+++ T Consensus 104 ~p~vVn~La~~f~N~~LseEd~r~~LAaale~l 136 (197) T d2bida_ 104 PPGLVNGLALQLRNTSRSEEDRNRDLATALEQL 136 (197) T ss_dssp CTTCHHHHHHHHHSGGGHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 868999999999865656889999999999999 No 9 >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=7.43 E-value=9.9 Score=17.03 Aligned_cols=40 Identities=15% Similarity=0.421 Sum_probs=22.6 Q ss_pred HHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7410111203046787654567899998647789988889 Q gi|254780980|r 18 IGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLA 57 (121) Q Consensus 18 I~GC~iVigrtEDllNklqknS~~MiKEA~~~i~E~HrLA 57 (121) +-||+|+||-.+-+++-+..++...-.=.-+-+-|+|++- T Consensus 119 l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~ 158 (208) T d1hv8a1 119 LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEML 158 (208) T ss_dssp HHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHH T ss_pred CCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHHH T ss_conf 0899999988699999997699776668699998848761 No 10 >d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Probab=6.50 E-value=53 Score=12.57 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=13.4 Q ss_pred HHHHHHHHHCCCCCHHH Q ss_conf 99999998366801034 Q gi|254780980|r 83 VDELANAFWDLSDEDKN 99 (121) Q Consensus 83 ~DeL~~~F~~L~~e~k~ 99 (121) .|-|.|.||.+-..++. T Consensus 38 LD~LIN~~m~~k~~~k~ 54 (57) T d2c0sa1 38 LDRLLNLLIELKTKKKR 54 (57) T ss_dssp HHHHHHHHHHHHHHCSS T ss_pred HHHHHHHHHHHHCCCCC T ss_conf 99999999988424534 Done!