Query         gi|254780980|ref|YP_003065393.1| hypothetical protein CLIBASIA_04405 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 121
No_of_seqs    2 out of 4
Neff          1.4 
Searched_HMMs 13730
Date          Wed Jun  1 10:57:53 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780980.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1ddba_ f.1.4.1 (A:) Proapopto  14.7      37  0.0027   13.6   2.9   31   79-109   102-134 (195)
  2 d1x4pa1 a.217.1.1 (A:8-60) Arg  12.7      21  0.0015   15.1   0.0   14   88-101    28-41  (53)
  3 d1a6qa1 a.159.1.1 (A:297-368)   11.8      45  0.0033   13.0   1.9   51   56-110     8-70  (72)
  4 d1ftha_ d.150.1.2 (A:) Holo-(a  11.3      47  0.0034   12.9   2.0   18   19-36      5-23  (117)
  5 d1lp1a_ a.8.1.1 (A:) Immunoglo   9.5      54  0.0039   12.5   2.3   25   84-108     4-34  (55)
  6 d1fc2c_ a.8.1.1 (C:) Immunoglo   9.0      57  0.0041   12.4   1.6   25   85-109     4-34  (44)
  7 d1dgfa_ e.5.1.1 (A:) Catalase    8.3      61  0.0044   12.2   1.8   29   85-113   437-467 (497)
  8 d2bida_ f.1.4.1 (A:) Proapopto   8.3      61  0.0044   12.2   1.9   31   79-109   104-136 (197)
  9 d1hv8a1 c.37.1.19 (A:3-210) Pu   7.4     9.9 0.00072   17.0  -3.2   40   18-57    119-158 (208)
 10 d2c0sa1 a.30.7.1 (A:1-57) Hypo   6.5      53  0.0039   12.6   0.1   17   83-99     38-54  (57)

No 1  
>d1ddba_ f.1.4.1 (A:) Proapoptotic molecule Bid {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.70  E-value=37  Score=13.55  Aligned_cols=31  Identities=35%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             HCCCHHHHHHHHH--CCCCCHHHHHHHHHHHHH
Q ss_conf             0678999999983--668010345443478754
Q gi|254780980|r   79 RKLSVDELANAFW--DLSDEDKNAFTGNVKQEV  109 (121)
Q Consensus        79 r~L~~DeL~~~F~--~L~~e~k~~F~~~vk~~v  109 (121)
                      +---|+.|+..|+  +|+.|++.-.....-+++
T Consensus       102 ~p~~V~~La~~f~N~sLseEd~~~~Laa~ve~l  134 (195)
T d1ddba_         102 QPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEV  134 (195)
T ss_dssp             CSSSHHHHHHHHCCSSSSSSSTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             689999999999864535899999999999999


No 2  
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.70  E-value=21  Score=15.07  Aligned_cols=14  Identities=43%  Similarity=0.838  Sum_probs=10.1

Q ss_pred             HHHHCCCCCHHHHH
Q ss_conf             99836680103454
Q gi|254780980|r   88 NAFWDLSDEDKNAF  101 (121)
Q Consensus        88 ~~F~~L~~e~k~~F  101 (121)
                      -+||-|||+|---|
T Consensus        28 P~yWFLsde~SlEy   41 (53)
T d1x4pa1          28 PAYWFLSDENSLEY   41 (53)
T ss_dssp             GGGCTTTCCSSSHH
T ss_pred             CCEEEEECCCCHHH
T ss_conf             87388606640147


No 3  
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.79  E-value=45  Score=13.03  Aligned_cols=51  Identities=22%  Similarity=0.227  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCH------------HHHHHHHHHHHHH
Q ss_conf             899999999999999998654430678999999983668010------------3454434787543
Q gi|254780980|r   56 LAQERVEAAEKRVKEVEERATASRKLSVDELANAFWDLSDED------------KNAFTGNVKQEVC  110 (121)
Q Consensus        56 LAqE~VE~A~kRVKE~EE~a~A~r~L~~DeL~~~F~~L~~e~------------k~~F~~~vk~~vc  110 (121)
                      --+|--..-++||+|.-+++    +-++.||.--|..|.++|            |..+|-.+-++.|
T Consensus         8 kE~eLd~~Le~~v~eii~~~----~~~~~dl~~Vm~~L~~e~Ip~LPPGGGL~sK~~~IE~vy~~l~   70 (72)
T d1a6qa1           8 KEAELDKYLECRVEEIIKKQ----GEGVPDLVHVMRTLASENIPSLPPGGELASKRNVIEAVYNRLN   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHTTCSSCCTTTGGGGGHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             89999999999999999876----5577109999999986689999999659999999999999768


No 4  
>d1ftha_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Streptococcus pneumoniae [TaxId: 1313]}
Probab=11.27  E-value=47  Score=12.93  Aligned_cols=18  Identities=22%  Similarity=0.392  Sum_probs=10.6

Q ss_pred             HHHHHE-EECCHHHHHHHH
Q ss_conf             410111-203046787654
Q gi|254780980|r   19 GGCDIV-IGRTEDLLNKLQ   36 (121)
Q Consensus        19 ~GC~iV-igrtEDllNklq   36 (121)
                      +||||| |-|-+.++++.+
T Consensus         5 IG~Div~i~Ri~~~l~~~~   23 (117)
T d1ftha_           5 HGIDIEELASIESAVTRHE   23 (117)
T ss_dssp             EEEEEEEHHHHHHHHHTTS
T ss_pred             EEEEEEEHHHHHHHHHHCH
T ss_conf             9887768599999998776


No 5  
>d1lp1a_ a.8.1.1 (A:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=9.54  E-value=54  Score=12.55  Aligned_cols=25  Identities=32%  Similarity=0.338  Sum_probs=17.0

Q ss_pred             HHHHHHHH------CCCCCHHHHHHHHHHHH
Q ss_conf             99999983------66801034544347875
Q gi|254780980|r   84 DELANAFW------DLSDEDKNAFTGNVKQE  108 (121)
Q Consensus        84 DeL~~~F~------~L~~e~k~~F~~~vk~~  108 (121)
                      +|+.++||      ||..+..++||...+..
T Consensus         4 ke~~~Af~ei~~lPNLn~~Qrn~fIqSLkDD   34 (55)
T d1lp1a_           4 KELSVAGREIVTLPNLNDPQKKAFIFSLWDD   34 (55)
T ss_dssp             HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf             8999989999828889989998899884138


No 6  
>d1fc2c_ a.8.1.1 (C:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=8.95  E-value=57  Score=12.41  Aligned_cols=25  Identities=36%  Similarity=0.713  Sum_probs=18.1

Q ss_pred             HHHHHHH------CCCCCHHHHHHHHHHHHH
Q ss_conf             9999983------668010345443478754
Q gi|254780980|r   85 ELANAFW------DLSDEDKNAFTGNVKQEV  109 (121)
Q Consensus        85 eL~~~F~------~L~~e~k~~F~~~vk~~v  109 (121)
                      +..++||      ||..+..++||..++..-
T Consensus         4 eqq~Af~Eil~lPNLne~Qrn~fI~SLkDDP   34 (44)
T d1fc2c_           4 EQQNAFYEILHLPNLNEEQRNGFIQSLKDDP   34 (44)
T ss_dssp             SHHHHHHHHHTCSSSCTHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf             9999999998388899899988888712480


No 7  
>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.31  E-value=61  Score=12.24  Aligned_cols=29  Identities=17%  Similarity=0.428  Sum_probs=20.5

Q ss_pred             HHHHHHH-C-CCCCHHHHHHHHHHHHHHHHE
Q ss_conf             9999983-6-680103454434787543210
Q gi|254780980|r   85 ELANAFW-D-LSDEDKNAFTGNVKQEVCKVK  113 (121)
Q Consensus        85 eL~~~F~-~-L~~e~k~~F~~~vk~~vckvk  113 (121)
                      .-++.|| . ++++.|.-++.|+-..+..|+
T Consensus       437 ~Q~~~~~~~~~~~~~~~~l~~n~~~~l~~~~  467 (497)
T d1dgfa_         437 TQVRAFYVNVLNEEQRKRLCENIAGHLKDAQ  467 (497)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHHTTSC
T ss_pred             CCCHHHHHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf             2316888873999999999999999860899


No 8  
>d2bida_ f.1.4.1 (A:) Proapoptotic molecule Bid {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.28  E-value=61  Score=12.23  Aligned_cols=31  Identities=23%  Similarity=0.194  Sum_probs=20.0

Q ss_pred             HCCCHHHHHHHHHC--CCCCHHHHHHHHHHHHH
Q ss_conf             06789999999836--68010345443478754
Q gi|254780980|r   79 RKLSVDELANAFWD--LSDEDKNAFTGNVKQEV  109 (121)
Q Consensus        79 r~L~~DeL~~~F~~--L~~e~k~~F~~~vk~~v  109 (121)
                      +---|++||..|+|  ||.||+.-.....-+++
T Consensus       104 ~p~vVn~La~~f~N~~LseEd~r~~LAaale~l  136 (197)
T d2bida_         104 PPGLVNGLALQLRNTSRSEEDRNRDLATALEQL  136 (197)
T ss_dssp             CTTCHHHHHHHHHSGGGHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             868999999999865656889999999999999


No 9  
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.43  E-value=9.9  Score=17.03  Aligned_cols=40  Identities=15%  Similarity=0.421  Sum_probs=22.6

Q ss_pred             HHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7410111203046787654567899998647789988889
Q gi|254780980|r   18 IGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLA   57 (121)
Q Consensus        18 I~GC~iVigrtEDllNklqknS~~MiKEA~~~i~E~HrLA   57 (121)
                      +-||+|+||-.+-+++-+..++...-.=.-+-+-|+|++-
T Consensus       119 l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~  158 (208)
T d1hv8a1         119 LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEML  158 (208)
T ss_dssp             HHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHH
T ss_pred             CCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHHH
T ss_conf             0899999988699999997699776668699998848761


No 10 
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=6.50  E-value=53  Score=12.57  Aligned_cols=17  Identities=29%  Similarity=0.481  Sum_probs=13.4

Q ss_pred             HHHHHHHHHCCCCCHHH
Q ss_conf             99999998366801034
Q gi|254780980|r   83 VDELANAFWDLSDEDKN   99 (121)
Q Consensus        83 ~DeL~~~F~~L~~e~k~   99 (121)
                      .|-|.|.||.+-..++.
T Consensus        38 LD~LIN~~m~~k~~~k~   54 (57)
T d2c0sa1          38 LDRLLNLLIELKTKKKR   54 (57)
T ss_dssp             HHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHCCCCC
T ss_conf             99999999988424534


Done!