RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780980|ref|YP_003065393.1| hypothetical protein CLIBASIA_04405 [Candidatus Liberibacter asiaticus str. psy62] (121 letters) >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 32.3 bits (72), Expect = 0.028 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 5/27 (18%) Query: 65 EKR-VKEVEERATASRKLSVDELANAF 90 EK+ +K+++ AS KL D+ A A Sbjct: 18 EKQALKKLQ----ASLKLYADDSAPAL 40 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 29.9 bits (66), Expect = 0.16 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 13/67 (19%) Query: 36 QKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVEERATASRKLSVDELAN-----AF 90 Q+ Q + A+ K+ E QE E A+K ++E +R S ++ +++ N AF Sbjct: 94 QRKRLQELDAAS-KVME-----QEWREKAKKDLEEWNQR--QSEQVEKNKINNRIADKAF 145 Query: 91 WDLSDED 97 + D D Sbjct: 146 YQQPDAD 152 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 28.8 bits (64), Expect = 0.33 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 33/98 (33%) Query: 22 DIVIGRTEDLL--------NKLQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVEE 73 DIVI +L ++++N + MI F+ +L E++ KE+ E Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIRENYSAMI----FETIVDGKLKTEKI------FKEINE 1712 Query: 74 RATA----SRK--LSVDELAN---------AFWDLSDE 96 +T+ S K LS + AF DL + Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750 >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252 Score = 27.6 bits (60), Expect = 0.68 Identities = 9/47 (19%), Positives = 20/47 (42%) Query: 59 ERVEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNV 105 V +++ + A + +A A+W L + K+A+T + Sbjct: 192 AWVRERREQMFGKDALANPDLLMPPAAVAGAYWQLYQQPKSAWTFEM 238 >3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM); HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E* Length = 121 Score = 27.5 bits (61), Expect = 0.88 Identities = 9/31 (29%), Positives = 18/31 (58%) Query: 66 KRVKEVEERATASRKLSVDELANAFWDLSDE 96 KR + ++R LS +EL FW+++++ Sbjct: 2 KRADDFQQRRAHLANLSDEELQTRFWEMAEK 32 >2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier protein desaturase; electron transfer, four-helix bundle, oxidoreductase; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 1afr_A 2j2f_A Length = 338 Score = 27.1 bits (60), Expect = 1.1 Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 50 ISETHRLAQERVEAAEKRVKEVEERATASRK 80 +S+ R AQE V +++ +EERA K Sbjct: 291 LSDEGRKAQEYVCELGPKIRRLEERAQGRAK 321 >2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET: ARG HEM; 3.20A {Geobacillus stearothermophilus} Length = 375 Score = 26.6 bits (59), Expect = 1.5 Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Query: 33 NKLQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVEE--RATASRKLSVDELA 87 +KL+++ Q++ +A I ++R + + ++RV E+ T + + + +EL+ Sbjct: 7 DKLRQHDEQLMTKAEQFIIASYRELGKSEQEIKRRVNEIRWEVEQTGTYRHTYEELS 63 >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) precursor; triclosan, enoyl reductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* Length = 297 Score = 26.6 bits (57), Expect = 1.6 Identities = 13/65 (20%), Positives = 23/65 (35%) Query: 41 QMIKEANFKISETHRLAQERVEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNA 100 Q I+ A + + + ++ A + L+ DE+ NA L +A Sbjct: 214 QNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASA 273 Query: 101 FTGNV 105 TG Sbjct: 274 ITGAT 278 >2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen; 1.40A {Fasciola hepatica} Length = 310 Score = 26.1 bits (56), Expect = 1.8 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Query: 58 QERVEAAEKRVKEVEER-ATASRKLSVDELA-NAFWDLSDEDKNAFTGNVKQEVCKVKKI 115 Q R EK VK ++E L L N F D++ E+ A + Sbjct: 22 QHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSH 81 Query: 116 TVP 118 VP Sbjct: 82 GVP 84 >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Score = 26.0 bits (56), Expect = 2.2 Identities = 11/65 (16%), Positives = 23/65 (35%) Query: 6 LMTSAFSTTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQERVEAAE 65 + T + + +G DI+I E + L+ S+ + E H + A Sbjct: 100 MATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATL 159 Query: 66 KRVKE 70 + + Sbjct: 160 EVILA 164 >2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea} Length = 105 Score = 25.6 bits (56), Expect = 2.7 Identities = 7/51 (13%), Positives = 15/51 (29%) Query: 61 VEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNVKQEVCK 111 ++ + + + + A SD+ A GN + K Sbjct: 1 MDQKSSSPQPAAQAPETKQAFPRKFVLAALEQSSDDAGWANLGNFGNYLNK 51 >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 Score = 25.2 bits (54), Expect = 3.5 Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 10/79 (12%) Query: 20 GCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHR-LAQERVEAAEKRVKEVEER---- 74 IVIG + + +++ + + + E L + ++ + + Sbjct: 126 QPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQML 185 Query: 75 ---ATASRKLSVDELANAF 90 AT K + + Sbjct: 186 VFSATIPEK--LKPFLKKY 202 >3lgc_A Glutaredoxin 1; alpha-beta sandwich, structural genomics, structural genomics of infectious diseases; 2.77A {Francisella tularensis subsp} Length = 89 Score = 24.9 bits (54), Expect = 4.3 Identities = 6/17 (35%), Positives = 9/17 (52%) Query: 18 IGGCDIVIGRTEDLLNK 34 IGG + + +LNK Sbjct: 72 IGGFTELKANADKILNK 88 >1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase; 2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A 1ka4_A Length = 499 Score = 24.9 bits (54), Expect = 4.6 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 13/86 (15%) Query: 25 IGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVE------------ 72 IGR+++ + + + + + E L V R + Sbjct: 309 IGRSKEFVELIYPVLKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYNFHILLRFK 368 Query: 73 -ERATASRKLSVDELANAFWDLSDED 97 ER S ++ +L + D + Sbjct: 369 LERLMVSEEIKAKDLPEMWNDEMERL 394 >3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Score = 25.1 bits (54), Expect = 4.9 Identities = 3/29 (10%), Positives = 11/29 (37%), Gaps = 1/29 (3%) Query: 47 NFKISETHRLAQERVEA-AEKRVKEVEER 74 +F +S + + + + A + + Sbjct: 4 DFHLSASQKGTYQAARSLARNLLMPARQT 32 >1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Length = 757 Score = 24.7 bits (54), Expect = 5.0 Identities = 18/105 (17%), Positives = 33/105 (31%) Query: 5 ILMTSAFSTTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQERVEAA 64 I+M A +T D TE+++ + IK ++ A + Sbjct: 215 IMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGEF 274 Query: 65 EKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNVKQEV 109 + ++ A EL+ A +D+ A VK Sbjct: 275 PVFLDYQDDVLEALSAAVRPELSAALTIAGKQDREAELDRVKALA 319 >1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 186 Score = 24.8 bits (54), Expect = 5.4 Identities = 13/39 (33%), Positives = 22/39 (56%) Query: 35 LQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVEE 73 L+ + + ++ AN I E + Q+R+E KRV +EE Sbjct: 42 LKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEE 80 >1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA, seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A {Staphylococcus aureus} SCOP: d.174.1.1 Length = 347 Score = 24.7 bits (54), Expect = 5.6 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 41 QMIKEANFKISETHRLAQERVEAAEKRVKEVEE--RATASRKLSVDELA 87 + KEA I ++ + KR+ ++E + T + + +EL Sbjct: 2 HLFKEAQAFIENMYKECHYETQIINKRLHDIELEIKETGTYTHTEEELI 50 >1y8a_A Hypothetical protein AF1437; structural genomics, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 1.40A {Archaeoglobus fulgidus dsm 4304} SCOP: c.108.1.24 Length = 332 Score = 24.3 bits (52), Expect = 7.1 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 7/83 (8%) Query: 3 AKILMTSAFS-TTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQERV 61 IL A + R L++ ++ ++ T +L + Sbjct: 31 PWILTDFALELCMAVFNNA------RFFSNLSEYDDYLAYEVRREGYEAGYTLKLLTPFL 84 Query: 62 EAAEKRVKEVEERATASRKLSVD 84 AA + ++VE A S K D Sbjct: 85 AAAGVKNRDVERIAELSAKFVPD 107 >3c37_A Peptidase, M48 family; X-RAY, Q74D82, GSR143A, structural genomics, PSI-2, protein structure initiative; 1.70A {Geobacter sulfurreducens pca} Length = 253 Score = 24.1 bits (51), Expect = 7.2 Identities = 5/19 (26%), Positives = 11/19 (57%) Query: 53 THRLAQERVEAAEKRVKEV 71 TH L ER++ + + ++ Sbjct: 207 THPLTSERIQRVQAEIAKL 225 >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359 Score = 24.3 bits (52), Expect = 7.3 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 2/78 (2%) Query: 12 STTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEV 71 T ++ + G ++ + K+ K +KI + +ERV + V Sbjct: 259 FTRIVILEGLYLLYDQEN--WKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLV 316 Query: 72 EERATASRKLSVDELANA 89 A K ++L N Sbjct: 317 TTIAEGREKFRSNDLLNG 334 >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural genomics consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 Score = 24.1 bits (51), Expect = 8.9 Identities = 8/51 (15%), Positives = 21/51 (41%) Query: 20 GCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKE 70 GC +++ L++ +++ + + E R+ E +R+ E Sbjct: 151 GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 201 >3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding, glyoxylate bypass, nucleotide-binding, protein phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157} PDB: 3lcb_A* 3lc6_A* Length = 578 Score = 24.1 bits (52), Expect = 9.0 Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 5/53 (9%) Query: 51 SETHRLAQERVEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTG 103 + + R+ + V V E+ + F K +T Sbjct: 41 HAVQQAMKNRIHLYDHHVGLVVEQLR--CITNGQSTDAEFL---LRVKEHYTR 88 >3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Length = 471 Score = 23.9 bits (51), Expect = 9.1 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Query: 57 AQERVEAAEKRVKEVEERATASRKL--SVDELANAFWDLSDE 96 AQ R+ AA ++ V E + L + E F D+ + Sbjct: 378 AQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQ 419 >1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Length = 140 Score = 24.0 bits (52), Expect = 9.1 Identities = 13/39 (33%), Positives = 22/39 (56%) Query: 35 LQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVEE 73 L+ + + ++ AN I E + Q+R+E KRV +EE Sbjct: 17 LKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEE 55 >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Score = 24.1 bits (51), Expect = 9.2 Identities = 7/57 (12%), Positives = 20/57 (35%) Query: 29 EDLLNKLQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVEERATASRKLSVDE 85 E ++Q+ K N+ + ++ + + + EVE + + + Sbjct: 665 EGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQ 721 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.312 0.126 0.337 Gapped Lambda K H 0.267 0.0508 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 937,678 Number of extensions: 36689 Number of successful extensions: 188 Number of sequences better than 10.0: 1 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 54 Length of query: 121 Length of database: 5,693,230 Length adjustment: 81 Effective length of query: 40 Effective length of database: 3,729,466 Effective search space: 149178640 Effective search space used: 149178640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 50 (23.6 bits)