RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780980|ref|YP_003065393.1| hypothetical protein
CLIBASIA_04405 [Candidatus Liberibacter asiaticus str. psy62]
(121 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.3 bits (72), Expect = 0.028
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
Query: 65 EKR-VKEVEERATASRKLSVDELANAF 90
EK+ +K+++ AS KL D+ A A
Sbjct: 18 EKQALKKLQ----ASLKLYADDSAPAL 40
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.9 bits (66), Expect = 0.16
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 36 QKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVEERATASRKLSVDELAN-----AF 90
Q+ Q + A+ K+ E QE E A+K ++E +R S ++ +++ N AF
Sbjct: 94 QRKRLQELDAAS-KVME-----QEWREKAKKDLEEWNQR--QSEQVEKNKINNRIADKAF 145
Query: 91 WDLSDED 97
+ D D
Sbjct: 146 YQQPDAD 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 2006
Score = 28.8 bits (64), Expect = 0.33
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 33/98 (33%)
Query: 22 DIVIGRTEDLL--------NKLQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVEE 73
DIVI +L ++++N + MI F+ +L E++ KE+ E
Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIRENYSAMI----FETIVDGKLKTEKI------FKEINE 1712
Query: 74 RATA----SRK--LSVDELAN---------AFWDLSDE 96
+T+ S K LS + AF DL +
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 27.6 bits (60), Expect = 0.68
Identities = 9/47 (19%), Positives = 20/47 (42%)
Query: 59 ERVEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNV 105
V +++ + A + +A A+W L + K+A+T +
Sbjct: 192 AWVRERREQMFGKDALANPDLLMPPAAVAGAYWQLYQQPKSAWTFEM 238
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM); HET:
PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB:
3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Length = 121
Score = 27.5 bits (61), Expect = 0.88
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 66 KRVKEVEERATASRKLSVDELANAFWDLSDE 96
KR + ++R LS +EL FW+++++
Sbjct: 2 KRADDFQQRRAHLANLSDEELQTRFWEMAEK 32
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier
protein desaturase; electron transfer, four-helix
bundle, oxidoreductase; HET: GVM; 1.95A {Hedera helix}
PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 1afr_A 2j2f_A
Length = 338
Score = 27.1 bits (60), Expect = 1.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 50 ISETHRLAQERVEAAEKRVKEVEERATASRK 80
+S+ R AQE V +++ +EERA K
Sbjct: 291 LSDEGRKAQEYVCELGPKIRRLEERAQGRAK 321
>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET:
ARG HEM; 3.20A {Geobacillus stearothermophilus}
Length = 375
Score = 26.6 bits (59), Expect = 1.5
Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 33 NKLQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVEE--RATASRKLSVDELA 87
+KL+++ Q++ +A I ++R + + ++RV E+ T + + + +EL+
Sbjct: 7 DKLRQHDEQLMTKAEQFIIASYRELGKSEQEIKRRVNEIRWEVEQTGTYRHTYEELS 63
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) precursor; triclosan,
enoyl reductase; HET: NAD TCL; 1.90A {Brassica napus}
SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 26.6 bits (57), Expect = 1.6
Identities = 13/65 (20%), Positives = 23/65 (35%)
Query: 41 QMIKEANFKISETHRLAQERVEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNA 100
Q I+ A + + + ++ A + L+ DE+ NA L +A
Sbjct: 214 QNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASA 273
Query: 101 FTGNV 105
TG
Sbjct: 274 ITGAT 278
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease,
cysteine protease, zymogen; 1.40A {Fasciola hepatica}
Length = 310
Score = 26.1 bits (56), Expect = 1.8
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 58 QERVEAAEKRVKEVEER-ATASRKLSVDELA-NAFWDLSDEDKNAFTGNVKQEVCKVKKI 115
Q R EK VK ++E L L N F D++ E+ A +
Sbjct: 22 QHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSH 81
Query: 116 TVP 118
VP
Sbjct: 82 GVP 84
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 26.0 bits (56), Expect = 2.2
Identities = 11/65 (16%), Positives = 23/65 (35%)
Query: 6 LMTSAFSTTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQERVEAAE 65
+ T + + +G DI+I E + L+ S+ + E H + A
Sbjct: 100 MATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATL 159
Query: 66 KRVKE 70
+ +
Sbjct: 160 EVILA 164
>2kpm_A Uncharacterized protein; methods development, structural genomics,
PSI-2, protein structure initiative; NMR {Nitrosomonas
europaea}
Length = 105
Score = 25.6 bits (56), Expect = 2.7
Identities = 7/51 (13%), Positives = 15/51 (29%)
Query: 61 VEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNVKQEVCK 111
++ + + + + A SD+ A GN + K
Sbjct: 1 MDQKSSSPQPAAQAPETKQAFPRKFVLAALEQSSDDAGWANLGNFGNYLNK 51
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 25.2 bits (54), Expect = 3.5
Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 10/79 (12%)
Query: 20 GCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHR-LAQERVEAAEKRVKEVEER---- 74
IVIG + + +++ + + + E L + ++ + +
Sbjct: 126 QPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQML 185
Query: 75 ---ATASRKLSVDELANAF 90
AT K + +
Sbjct: 186 VFSATIPEK--LKPFLKKY 202
>3lgc_A Glutaredoxin 1; alpha-beta sandwich, structural genomics,
structural genomics of infectious diseases; 2.77A
{Francisella tularensis subsp}
Length = 89
Score = 24.9 bits (54), Expect = 4.3
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 18 IGGCDIVIGRTEDLLNK 34
IGG + + +LNK
Sbjct: 72 IGGFTELKANADKILNK 88
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase;
2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A
1ka4_A
Length = 499
Score = 24.9 bits (54), Expect = 4.6
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 13/86 (15%)
Query: 25 IGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVE------------ 72
IGR+++ + + + + + E L V R +
Sbjct: 309 IGRSKEFVELIYPVLKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYNFHILLRFK 368
Query: 73 -ERATASRKLSVDELANAFWDLSDED 97
ER S ++ +L + D +
Sbjct: 369 LERLMVSEEIKAKDLPEMWNDEMERL 394
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD;
2.00A {Podospora anserina}
Length = 438
Score = 25.1 bits (54), Expect = 4.9
Identities = 3/29 (10%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 47 NFKISETHRLAQERVEA-AEKRVKEVEER 74
+F +S + + + + A + +
Sbjct: 4 DFHLSASQKGTYQAARSLARNLLMPARQT 32
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 24.7 bits (54), Expect = 5.0
Identities = 18/105 (17%), Positives = 33/105 (31%)
Query: 5 ILMTSAFSTTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQERVEAA 64
I+M A +T D TE+++ + IK ++ A +
Sbjct: 215 IMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGEF 274
Query: 65 EKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNVKQEV 109
+ ++ A EL+ A +D+ A VK
Sbjct: 275 PVFLDYQDDVLEALSAAVRPELSAALTIAGKQDREAELDRVKALA 319
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain,
membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Length = 186
Score = 24.8 bits (54), Expect = 5.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 35 LQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVEE 73
L+ + + ++ AN I E + Q+R+E KRV +EE
Sbjct: 42 LKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEE 80
>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA,
seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A
{Staphylococcus aureus} SCOP: d.174.1.1
Length = 347
Score = 24.7 bits (54), Expect = 5.6
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 41 QMIKEANFKISETHRLAQERVEAAEKRVKEVEE--RATASRKLSVDELA 87
+ KEA I ++ + KR+ ++E + T + + +EL
Sbjct: 2 HLFKEAQAFIENMYKECHYETQIINKRLHDIELEIKETGTYTHTEEELI 50
>1y8a_A Hypothetical protein AF1437; structural genomics, protein structure
initiative, PSI, midwest center for structural genomics,
MCSG; 1.40A {Archaeoglobus fulgidus dsm 4304} SCOP:
c.108.1.24
Length = 332
Score = 24.3 bits (52), Expect = 7.1
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 3 AKILMTSAFS-TTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQERV 61
IL A + R L++ ++ ++ T +L +
Sbjct: 31 PWILTDFALELCMAVFNNA------RFFSNLSEYDDYLAYEVRREGYEAGYTLKLLTPFL 84
Query: 62 EAAEKRVKEVEERATASRKLSVD 84
AA + ++VE A S K D
Sbjct: 85 AAAGVKNRDVERIAELSAKFVPD 107
>3c37_A Peptidase, M48 family; X-RAY, Q74D82, GSR143A, structural genomics,
PSI-2, protein structure initiative; 1.70A {Geobacter
sulfurreducens pca}
Length = 253
Score = 24.1 bits (51), Expect = 7.2
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 53 THRLAQERVEAAEKRVKEV 71
TH L ER++ + + ++
Sbjct: 207 THPLTSERIQRVQAEIAKL 225
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 24.3 bits (52), Expect = 7.3
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 12 STTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEV 71
T ++ + G ++ + K+ K +KI + +ERV + V
Sbjct: 259 FTRIVILEGLYLLYDQEN--WKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLV 316
Query: 72 EERATASRKLSVDELANA 89
A K ++L N
Sbjct: 317 TTIAEGREKFRSNDLLNG 334
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural genomics consortium, hydrolase; HET: AMP;
2.20A {Homo sapiens}
Length = 417
Score = 24.1 bits (51), Expect = 8.9
Identities = 8/51 (15%), Positives = 21/51 (41%)
Query: 20 GCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKE 70
GC +++ L++ +++ + + E R+ E +R+ E
Sbjct: 151 GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 201
>3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding,
glyoxylate bypass, nucleotide-binding, protein
phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157}
PDB: 3lcb_A* 3lc6_A*
Length = 578
Score = 24.1 bits (52), Expect = 9.0
Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 5/53 (9%)
Query: 51 SETHRLAQERVEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTG 103
+ + R+ + V V E+ + F K +T
Sbjct: 41 HAVQQAMKNRIHLYDHHVGLVVEQLR--CITNGQSTDAEFL---LRVKEHYTR 88
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic
protein; HIV, antiviral protein; 2.80A {Escherichia
coli}
Length = 471
Score = 23.9 bits (51), Expect = 9.1
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 57 AQERVEAAEKRVKEVEERATASRKL--SVDELANAFWDLSDE 96
AQ R+ AA ++ V E + L + E F D+ +
Sbjct: 378 AQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQ 419
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport;
2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Length = 140
Score = 24.0 bits (52), Expect = 9.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 35 LQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVEE 73
L+ + + ++ AN I E + Q+R+E KRV +EE
Sbjct: 17 LKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEE 55
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 24.1 bits (51), Expect = 9.2
Identities = 7/57 (12%), Positives = 20/57 (35%)
Query: 29 EDLLNKLQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVEERATASRKLSVDE 85
E ++Q+ K N+ + ++ + + + EVE + + +
Sbjct: 665 EGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQ 721
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.312 0.126 0.337
Gapped
Lambda K H
0.267 0.0508 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 937,678
Number of extensions: 36689
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 54
Length of query: 121
Length of database: 5,693,230
Length adjustment: 81
Effective length of query: 40
Effective length of database: 3,729,466
Effective search space: 149178640
Effective search space used: 149178640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.6 bits)