Query gi|254780981|ref|YP_003065394.1| hypothetical protein CLIBASIA_04410 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 122
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 20:06:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780981.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1m1j_A Fibrinogen alpha subun 75.8 2.1 6.1E-05 22.4 2.6 36 43-78 3-38 (373)
2 >3ftb_A Histidinol-phosphate a 28.1 19 0.00055 17.2 0.6 18 10-27 28-45 (142)
3 >2j5c_A 1,8-cineole synthase; 9.5 71 0.0021 14.1 -0.2 68 45-112 20-93 (123)
4 >2hj1_A Hypothetical protein; 9.4 76 0.0023 13.9 0.0 11 75-85 87-97 (97)
5 >2djf_C Cathepsin C, dipeptidy 9.2 74 0.0022 13.9 -0.1 23 13-35 47-69 (69)
6 >3bio_A Oxidoreductase, GFO/ID 7.1 1E+02 0.003 13.2 -0.1 15 97-111 53-67 (74)
7 >3g4d_A (+)-delta-cadinene syn 6.7 1.2E+02 0.0034 12.9 -0.1 33 81-113 85-121 (150)
8 >1brv_A Protein G, BRSV-G regi 6.4 1.5E+02 0.0045 12.3 0.4 19 17-35 13-31 (32)
9 >1dce_A Protein (RAB geranylge 6.3 1.7E+02 0.0049 12.0 0.6 21 5-25 32-52 (66)
10 >1v54_D Cytochrome C oxidase s 5.5 1.6E+02 0.0048 12.1 0.1 35 31-73 23-57 (107)
No 1
>>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} (A:119-491)
Probab=75.84 E-value=2.1 Score=22.38 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH
Q ss_conf 024778878999886510186778656654300173
Q gi|254780981|r 43 ENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDP 78 (122)
Q Consensus 43 enekkelsehekkviesqenpkkqfsehekketddp 78 (122)
|+.||.+.|+|+.+-.-++|-++|..+.++++.+..
T Consensus 3 ~~lk~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 38 (373)
T 1m1j_A 3 VTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 38 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999
No 2
>>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} (A:1-40,A:260-361)
Probab=28.13 E-value=19 Score=17.20 Aligned_cols=18 Identities=50% Similarity=0.695 Sum_probs=13.6
Q ss_pred HHHHHCCCCCCCCCCCCC
Q ss_conf 999740568344550013
Q gi|254780981|r 10 MLFVSSAINPCGIEEDNL 27 (122)
Q Consensus 10 mlfvssainpcgieednl 27 (122)
.|-.||.|||.||+.+..
T Consensus 28 ~~~~~~~~~~~~~ed~~~ 45 (142)
T 3ftb_A 28 LLDYSSNINPLGIKDTNY 45 (142)
T ss_dssp CEETTCCCCTTCSSCHHH
T ss_pred EEECCCCCCCCCCHCHHH
T ss_conf 698789999878738899
No 3
>>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} (A:330-452)
Probab=9.46 E-value=71 Score=14.06 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHCCCHH-HHHHHHHHHHHHHHHH----HCCCCHHHHHHHCCCCC
Q ss_conf 47788789998865101867786566-543001733-3334335766654332----10246145544204731
Q gi|254780981|r 45 EKKELSEHEKKVIESQENPKKQFSEH-EKKETDDPK-SARKENIVMKKTFSQK----SKKYTPYFDHYMTNGHL 112 (122)
Q Consensus 45 ekkelsehekkviesqenpkkqfseh-ekketddpk-sarkenivmkktfsqk----skkytpyfdhymtnghl 112 (122)
.-..|++.-|.+...--|--..+... .+...-+.. -.++.-.-+-+.+-+- ..+|.|-||-||.||-.
T Consensus 20 ~~~~LPeymK~~y~~l~~~~~eie~~~~~~~~~~~~~y~k~~~~~l~~~yl~EakW~~~~yvPt~eEYl~~~~v 93 (123)
T 2j5c_A 20 SMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWI 93 (123)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCEEE
T ss_conf 33207779999999999999999999998078509999999999999999999999716938888999751045
No 4
>>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative; 2.10A {Haemophilus influenzae 86-028np} (A:)
Probab=9.42 E-value=76 Score=13.87 Aligned_cols=11 Identities=45% Similarity=0.749 Sum_probs=7.6
Q ss_pred CCCHHHHHHHH
Q ss_conf 01733333433
Q gi|254780981|r 75 TDDPKSARKEN 85 (122)
Q Consensus 75 tddpksarken 85 (122)
+-|||.+|++|
T Consensus 87 ~~DPK~~RR~~ 97 (97)
T 2hj1_A 87 LADPKEIRREG 97 (97)
T ss_dssp C----------
T ss_pred CCCHHHHHCCC
T ss_conf 55976883169
No 5
>>2djf_C Cathepsin C, dipeptidyl-peptidase 1; protein-inhibitor complex, covalently bound inhibitor, DPPI- inhibitor complex, cathepsin C inhibitor complex; HET: NAG PHE; 2.00A {Homo sapiens} PDB: 1k3b_C* 2djg_C* (C:)
Probab=9.24 E-value=74 Score=13.93 Aligned_cols=23 Identities=22% Similarity=0.658 Sum_probs=15.8
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 74056834455001333777113
Q gi|254780981|r 13 VSSAINPCGIEEDNLKSSPLPHI 35 (122)
Q Consensus 13 vssainpcgieednlkssplphi 35 (122)
++...|.|||+.+..-..|.|-|
T Consensus 47 i~~g~n~cgi~~~~~~~~~~~~~ 69 (69)
T 2djf_C 47 IRRGTDECAIESIAVAATPIPKL 69 (69)
T ss_dssp EECSSCGGGTTSCCEEEEECCCC
T ss_pred EECCCCCCCCCCCEEEEECCCCC
T ss_conf 97589965767715841005679
No 6
>>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis W83} (A:153-226)
Probab=7.15 E-value=1e+02 Score=13.17 Aligned_cols=15 Identities=33% Similarity=0.217 Sum_probs=10.7
Q ss_pred CCCCHHHHHHHCCCC
Q ss_conf 024614554420473
Q gi|254780981|r 97 KKYTPYFDHYMTNGH 111 (122)
Q Consensus 97 kkytpyfdhymtngh 111 (122)
-|--|||.+|-|.-|
T Consensus 53 Ik~~pYF~~~~T~V~ 67 (74)
T 3bio_A 53 IKADEYFVHDETHVI 67 (74)
T ss_dssp HHHSTTTTTSEEEEE
T ss_pred HCCCCCCCCCCCEEE
T ss_conf 638875557773189
No 7
>>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* (A:287-436)
Probab=6.74 E-value=1.2e+02 Score=12.89 Aligned_cols=33 Identities=18% Similarity=0.431 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHH----HCCCCHHHHHHHCCCCCC
Q ss_conf 334335766654332----102461455442047312
Q gi|254780981|r 81 ARKENIVMKKTFSQK----SKKYTPYFDHYMTNGHLN 113 (122)
Q Consensus 81 arkenivmkktfsqk----skkytpyfdhymtnghln 113 (122)
+|+.-..+-+.+-|- ..+|.|-||-||-||-..
T Consensus 85 ~k~~~~~l~~~yl~EakW~~~~yvPt~eEYl~~~~iS 121 (150)
T 3g4d_A 85 AKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPT 121 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCC
T ss_conf 9999999999999999998369989879887513001
No 8
>>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} (A:)
Probab=6.38 E-value=1.5e+02 Score=12.26 Aligned_cols=19 Identities=42% Similarity=0.586 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCCCCCCHH
Q ss_conf 6834455001333777113
Q gi|254780981|r 17 INPCGIEEDNLKSSPLPHI 35 (122)
Q Consensus 17 inpcgieednlkssplphi 35 (122)
--||.+-|+|+.-++|-.|
T Consensus 13 ~vPcstcegn~ac~sLcqi 31 (32)
T 1brv_A 13 YVPCSTCEGNLACLSLCHI 31 (32)
T ss_pred CCCCHHCCCCCCCCCCCCC
T ss_conf 5442200688323000404
No 9
>>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} (A:352-417)
Probab=6.34 E-value=1.7e+02 Score=12.03 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=11.7
Q ss_pred HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999999997405683445500
Q gi|254780981|r 5 FTILTMLFVSSAINPCGIEED 25 (122)
Q Consensus 5 ftiltmlfvssainpcgieed 25 (122)
++++|+..+--||.|-+-.++
T Consensus 32 W~LlT~~lLmraid~~~~~~e 52 (66)
T 1dce_A 32 WCLLTIILLMRALDPLLYEKE 52 (66)
T ss_dssp HHHHHHHHHHHHHCTGGGHHH
T ss_pred CHHHHHHHHHHHCCCCCCCHH
T ss_conf 136678999984444346288
No 10
>>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (D:1-107)
Probab=5.47 E-value=1.6e+02 Score=12.08 Aligned_cols=35 Identities=34% Similarity=0.440 Sum_probs=0.0
Q ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 7711345431010247788789998865101867786566543
Q gi|254780981|r 31 PLPHIALESLSAENEKKELSEHEKKVIESQENPKKQFSEHEKK 73 (122)
Q Consensus 31 plphialeslsaenekkelsehekkviesqenpkkqfsehekk 73 (122)
|+|.|..+ +++++-.+..-|-+..+=++.|..|||
T Consensus 23 PlP~~r~~--------~~~~~eq~aLreKekg~Wk~LS~eEKk 57 (107)
T 1v54_D 23 PLPDVAHV--------KNLSASQKALKEKEKASWSSLSIDEKV 57 (107)
T ss_dssp CSCSSCSC--------CCCCHHHHHHHHHTTSCGGGSCHHHHH
T ss_pred CCCCCCCC--------CCCCHHHHHHHHHHCCCHHHCCHHHHH
T ss_conf 89876210--------128999999999850996666999999
Done!