RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780981|ref|YP_003065394.1| hypothetical protein
CLIBASIA_04410 [Candidatus Liberibacter asiaticus str. psy62]
(122 letters)
>gnl|CDD|151681 pfam11239, DUF3040, Protein of unknown function (DUF3040). Some
members in this family of proteins with unknown
function are annotated as membrane proteins however
this cannot be confirmed.
Length = 82
Score = 29.9 bits (68), Expect = 0.19
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 49 LSEHEKKVIESQENPKKQFSEHEKKETDDPKSAR 82
LSEHE++ +E E + +DPK A
Sbjct: 3 LSEHEQRRLEEIE---RALYA------EDPKFAA 27
>gnl|CDD|179754 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 27.5 bits (62), Expect = 0.80
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 38 ESLSAENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSARKENIVM 88
SLS E +++ L E +++E +E K+ EKK +A K +VM
Sbjct: 59 NSLSLEEQRERLEELAPELLEEEEEKKE-----EKKGLPPLPNAEKGKVVM 104
>gnl|CDD|179778 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 26.8 bits (60), Expect = 1.4
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 42 AENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSARKENIVMKKTFSQKSKKYTP 101
+ ++E E +KK ++ +++ E EKKE + + +E K+ +K KK
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK-EEEEEEAEEEKEEEEEKKKKQAT 478
Query: 102 YFD 104
FD
Sbjct: 479 LFD 481
>gnl|CDD|150408 pfam09729, Gti1_Pac2, Gti1/Pac2 family. In S. pombe the gti1
protein promotes the onset of gluconate uptake upon
glucose starvation. In S. pombe the Pac2 protein
controls the onset of sexual development, by inhibiting
the expression of ste11, in a pathway that is
independent of the cAMP cascade.
Length = 150
Score = 26.5 bits (59), Expect = 1.6
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 40 LSAENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSAR-KENIVMKKTFS 93
L N E +K S + S R KE+ ++KKT S
Sbjct: 79 LEKPNNPGEKKRSSRKRSLDGSRKAAVGSPNSTLVGSLVDSYRFKEDGLIKKTIS 133
>gnl|CDD|183692 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 26.3 bits (59), Expect = 2.2
Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 46 KKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSARKENIVMKKTFSQKSKKY 99
+ EL + EK++++ +EN ++ EK+E ++ + KE ++ +K ++
Sbjct: 81 RNELQKLEKRLLQKEENLDRKLELLEKRE-EELEKKEKELEQKQQELEKKEEEL 133
>gnl|CDD|70841 pfam07390, P30, Mycoplasma P30 protein. This family consists of
several P30 proteins which seem to be specific to
Mycoplasma agalactiae. P30 is a 30-kDa immunodominant
antigen and is known to be a transmembrane protein.
Length = 266
Score = 25.9 bits (56), Expect = 2.9
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 20/109 (18%)
Query: 24 EDNLKSSPLPHIALESLSAENEKKELSEHEKKVIESQENPKKQ----------------F 67
E N K SP AL L +EN + ++EK + ES E K + F
Sbjct: 82 ETNAKESP----ALNDLYSENPATPIFKNEKGIKESSEGSKNEGDKVIAGKEAIYKDIDF 137
Query: 68 SEHEKKETDDPKSARKENIVMKKTFSQKSKKYTPYFDHYMTNGHLNLPQ 116
+ K T D K + E+++ K S K + Y D +G L Q
Sbjct: 138 DISKVKITIDKKDLKDEDLISPKKGSHKQLFFNTYKDKTKVSGKLEKDQ 186
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion
protein; Provisional.
Length = 311
Score = 25.4 bits (55), Expect = 3.4
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 37 LESLSAENEKKELSEHEKKVIESQENPK---KQFSEHEKKETDDPKSARKENIVMK---K 90
L ++ A+ KK L K +E+++ K + EK E DP+ ++E V+K K
Sbjct: 119 LAAIKAKKSKKPLPVEPKAKVETKKVAKPSKVEVKPVEKDENVDPELLKREQQVLKVVEK 178
Query: 91 TFSQKSKKYT 100
T SQK ++ T
Sbjct: 179 TASQKEEETT 188
>gnl|CDD|178442 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 25.4 bits (56), Expect = 3.5
Identities = 10/70 (14%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 33 PHIALESLSAENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSARKENIVMKKTF 92
A+E + KK + K + + + + ++ DDP ++ ++ +++
Sbjct: 2 SQEAVEESGEKISKKAAKKAAAKAEKLRREATAKAAAASLEDEDDPLASNYGDVPLEELQ 61
Query: 93 SQKS-KKYTP 101
S+ + +++T
Sbjct: 62 SKVTGREWTD 71
>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha
proteobacterial clade. This model represents a small
clade of anthranilate synthases from alpha
proteobacteria and Nostoc (a cyanobacterium). This
enzyme is the first step in the pathway for the
biosynthesis of tryprophan from chorismate.
Length = 717
Score = 25.2 bits (55), Expect = 4.3
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 32 LPHIALESLSAENEKKELSEHEKKVIESQENPKKQFSEHEK 72
LP IA E+L L E +V S +P F E E+
Sbjct: 81 LPAIA-EALRGLEALAGLEEAPSRVTASSASPPAPFPEEER 120
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 25.0 bits (55), Expect = 4.8
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 36 ALESLSAENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSARKENIV 87
A ++L E + E + + QEN K + E+ E + + E ++
Sbjct: 314 AKKALHQLTENIKHVEDRRFLEACQENMAKWWKWMEEDENNASTPIKPERVM 365
>gnl|CDD|163068 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation.
Length = 338
Score = 25.2 bits (55), Expect = 4.9
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 23 EEDNLKSSPLPHIALESLSAENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSAR 82
EE+ S+ H A E + E E+ + + E + E E P ++ + E ++
Sbjct: 152 EEEESFSAEFEHPAQEETAGEEERTDEPKVEHEAHEQHEQP----ADDDPDEWKI-SASE 206
Query: 83 KENIVMKKTFSQKSKKYTPYFD 104
+ + S + + Y Y D
Sbjct: 207 PFQLESEVEASPEEENYEEYED 228
>gnl|CDD|149519 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 24.8 bits (55), Expect = 6.0
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 49 LSEHEKKVIESQEN---PKKQFSEHEKKETDDPKSARKENIVMKKTFSQKSKKY 99
L+E K + ES E KK+ EK E K+ K K K + +
Sbjct: 47 LNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLF 100
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase.
Length = 784
Score = 24.5 bits (53), Expect = 6.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 96 SKKYTPYFDHYMTNGHLN 113
S K TP D YMTN +++
Sbjct: 614 SNKSTPTLDEYMTNAYVS 631
>gnl|CDD|178764 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
Provisional.
Length = 566
Score = 24.4 bits (53), Expect = 7.8
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 72 KKETDDPKSARKENIVMKKTFSQ 94
K D PK +EN +++ Q
Sbjct: 241 GKVQDLPKGLERENKIIQTIMRQ 263
>gnl|CDD|162113 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger.
Length = 1096
Score = 24.2 bits (52), Expect = 7.8
Identities = 11/47 (23%), Positives = 26/47 (55%)
Query: 42 AENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSARKENIVM 88
+E E++E E E++ E +E +++ E + P++ +K+ I +
Sbjct: 863 SEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQAIYL 909
>gnl|CDD|129001 smart00762, Cog4, COG4 transport protein. This region is found in
yeast oligomeric golgi complex component 4 which is
involved in ER to Golgi and intra Golgi transport.
Length = 324
Score = 24.2 bits (53), Expect = 8.0
Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 66 QFSEHEKKETDDPKSARKENIVMKKTFSQKSKKYTPYFD----HYMT 108
+F+E + ++ + ++ FS K ++ + +Y
Sbjct: 205 EFTERSQDPEEEKQEIELPKLLRDSKFSTKIQELLGTYVPLETYYFR 251
>gnl|CDD|150489 pfam09825, BPL_N, Biotin-protein ligase, N terminal. The function
of this structural domain is unknown. It is found to the
N terminus of the biotin protein ligase catalytic
domain.
Length = 364
Score = 24.2 bits (53), Expect = 9.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 96 SKKYTPYFDH 105
S K TPYFDH
Sbjct: 348 SSKLTPYFDH 357
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.308 0.126 0.350
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,851,605
Number of extensions: 97693
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 74
Length of query: 122
Length of database: 5,994,473
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,222,617
Effective search space: 168904680
Effective search space used: 168904680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.7 bits)